BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022240
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EH5|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Palmitate
pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
pdb|1EXW|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Hexadecylsulfonyl Fluoride
Length = 279
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 15/238 (6%)
Query: 72 LPFIVLHGISDKCTN----RGVTQFTELLSSWSGSQGYCIEIG----DGAWDSWTMPLFQ 123
LP ++ HG+ D C N + + E G +EIG + +S+ + +
Sbjct: 6 LPLVIWHGMGDSCCNPLSMGAIKKMVE--KKIPGIHVLSLEIGKTLREDVENSFFLNVNS 63
Query: 124 QTAIACEKVKNMSQLSDGYNIIGLSQGNMIGRGIIEFCEGGPPVKNLISLAGPHAGIAAI 183
Q C+ + +L GYN +G SQG R + + C PP+ NLIS+ G H G+ +
Sbjct: 64 QVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPS-PPMVNLISVGGQHQGVFGL 122
Query: 184 PLC--GFLPICILLDALVKLEIYSDFLQDHLAPSGYYKIPTDIPEYLKGCKFLPKLNNEI 241
P C IC + + Y+ +Q+ L + Y+ P Y FL +N E
Sbjct: 123 PRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQE- 181
Query: 242 VNERNSTYKERFASLENLVLIMFEQDSVLVPKETSWFGYYPDGSFDPLLPAQQVVLPT 299
N +YK+ +L+ V++ F D+++ P ++ WFG+Y G +P Q+ L T
Sbjct: 182 -RGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYT 238
>pdb|3GRO|A Chain A, Human Palmitoyl-Protein Thioesterase 1
pdb|3GRO|B Chain B, Human Palmitoyl-Protein Thioesterase 1
Length = 298
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 15/238 (6%)
Query: 72 LPFIVLHGISDKCTN----RGVTQFTELLSSWSGSQGYCIEIG----DGAWDSWTMPLFQ 123
LP ++ HG D C N + + E G +EIG + +S+ + +
Sbjct: 13 LPLVIWHGXGDSCCNPLSXGAIKKXVE--KKIPGIYVLSLEIGKTLXEDVENSFFLNVNS 70
Query: 124 QTAIACEKVKNMSQLSDGYNIIGLSQGNMIGRGIIEFCEGGPPVKNLISLAGPHAGIAAI 183
Q C+ + +L GYN G SQG R + + C PP NLIS+ G H G+ +
Sbjct: 71 QVTTVCQALAKDPKLQQGYNAXGFSQGGQFLRAVAQRCPS-PPXINLISVGGQHQGVFGL 129
Query: 184 PLC--GFLPICILLDALVKLEIYSDFLQDHLAPSGYYKIPTDIPEYLKGCKFLPKLNNEI 241
P C IC + + YS +Q+ L + Y+ P Y FL +N E
Sbjct: 130 PRCPGESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQE- 188
Query: 242 VNERNSTYKERFASLENLVLIMFEQDSVLVPKETSWFGYYPDGSFDPLLPAQQVVLPT 299
N +YK+ +L+ V + F DS++ P ++ WFG+Y G +P Q+ L T
Sbjct: 189 -RGINESYKKNLXALKKFVXVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYT 245
>pdb|1PJA|A Chain A, The Crystal Structure Of Palmitoyl Protein Thioesterase-2
Reveals The Basis For Divergent Substrate Specificities
Of The Two Lysosomal Thioesterases (Ppt1 And Ppt2)
Length = 302
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 73 PFIVLHGISDKCTN-RGVTQFTELLSSWSGSQGYCIEIGDGAWDSWTMPLFQQTAIACEK 131
P IV+HG+ D + R + ++ + G+ +++ DG PL++Q E
Sbjct: 38 PVIVVHGLFDSSYSFRHLLEYIN--ETHPGTVVTVLDLFDGR--ESLRPLWEQVQGFREA 93
Query: 132 VKN-MSQLSDGYNIIGLSQGNMIGRGIIEFCEGGPPVKNLISLAGPHAG-IAAIPLCGFL 189
V M++ G ++I SQG ++ R ++ + V + ISL+ P G +L
Sbjct: 94 VVPIMAKAPQGVHLICYSQGGLVCRALLSVMDD-HNVDSFISLSSPQMGQYGDTDYLKWL 152
Query: 190 PICILLDALVKLEIYSDFLQDHLAPSGYYKIPTDIPEYLKGCKFLPKLNNEIVNERNSTY 249
+ L ++ YS + Q+ + Y+ P YL FL +N E + + +
Sbjct: 153 FPTSMRSNLYRI-CYSPWGQE-FSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVW 210
Query: 250 KERFASLENLVLIMFEQDSVLVPKETSWFGYY 281
++ F + +LVLI D V+ P ++S+FG+Y
Sbjct: 211 RKNFLRVGHLVLIGGPDDGVITPWQSSFFGFY 242
>pdb|2J87|A Chain A, Structure Of Vaccinia Virus Thymidine Kinase In Complex
With Dttp: Insights For Drug Design
pdb|2J87|B Chain B, Structure Of Vaccinia Virus Thymidine Kinase In Complex
With Dttp: Insights For Drug Design
pdb|2J87|C Chain C, Structure Of Vaccinia Virus Thymidine Kinase In Complex
With Dttp: Insights For Drug Design
pdb|2J87|D Chain D, Structure Of Vaccinia Virus Thymidine Kinase In Complex
With Dttp: Insights For Drug Design
Length = 177
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 90 TQFTELLSSWSGSQGYCIEI---GDGAWDS--WTMPLFQQTAIACEKVKNMSQLSDGYNI 144
T+ + + +Q C+ I D + + WT A+ K+ ++ Q +++
Sbjct: 19 TELIRRVRRYQIAQYKCVTIKYSNDNRYGTGLWTHDKNNFEALEATKLCDVLQSITDFSV 78
Query: 145 IGLSQGNMIGRGIIEFCEGGPPVKNLISLAGPHAGIAAIPLCGFLPICILLDALVKL 201
IG+ +G I+EFCE ++ +A P L + IL + +VKL
Sbjct: 79 IGIDEGQFFP-DIVEFCERMANEGKIVIVAALDGTFQRKPFNNILNLLILSEMVVKL 134
>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron
Navigator 2
Length = 129
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 202 EIYSDFLQDHLAPSGYYKIPTDIPEYLKGCKFLPKLNNEIVNER----NSTYKERFASLE 257
IY+D+ +LA SG+ ++ D+ + + L ++ + NE+ N K R +E
Sbjct: 21 RIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIE 80
Query: 258 NL 259
N+
Sbjct: 81 NI 82
>pdb|3D2B|A Chain A, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2B|B Chain B, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 73 PFIVLHGISDKCTNRGVTQFTELLSSWSGSQGYCIEIGDGAWDSWT----MPLFQQTAIA 128
P +++HGI +N + + WS + Y ++ D ++ + F Q +
Sbjct: 5 PVVMVHGIGGASSNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVLD 64
Query: 129 CEKVKNMSQLSDGYNIIGLSQGNMIGRGIIEFCEGGPPVKNLISLAGPH 177
K + +I+ S G I++ +GG V N+++L G +
Sbjct: 65 ETGAKKV-------DIVAHSMGGANTLYYIKYLDGGNKVANVVTLGGAN 106
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 25/64 (39%)
Query: 200 KLEIYSDFLQDHLAPSGYYKIPTDIPEYLKGCKFLPKLNNEIVNERNSTYKERFASLENL 259
KL + D + SG + D K L N++VN N +YK FA E L
Sbjct: 81 KLMVTGAQYMDLIRESGGFGWEMDRESLCPNWKTLIAAKNKVVNSINESYKSMFADTEGL 140
Query: 260 VLIM 263
M
Sbjct: 141 SFHM 144
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 25/64 (39%)
Query: 200 KLEIYSDFLQDHLAPSGYYKIPTDIPEYLKGCKFLPKLNNEIVNERNSTYKERFASLENL 259
KL + D + SG + D K L N++VN N +YK FA E L
Sbjct: 81 KLMVTGAQYMDLIRESGGFGWEMDRESLCPNWKTLIAAKNKVVNSINESYKSMFADTEGL 140
Query: 260 VLIM 263
M
Sbjct: 141 SFHM 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,608,148
Number of Sequences: 62578
Number of extensions: 409455
Number of successful extensions: 837
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 13
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)