Query 022242
Match_columns 300
No_of_seqs 242 out of 1685
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2145 Cytoplasmic tryptophan 100.0 1E-100 2E-105 696.6 18.9 292 9-300 7-301 (397)
2 PLN02486 aminoacyl-tRNA ligase 100.0 6.6E-90 1.4E-94 662.8 25.4 286 15-300 1-288 (383)
3 PRK12285 tryptophanyl-tRNA syn 100.0 8.1E-79 1.8E-83 584.4 22.4 270 12-300 1-274 (368)
4 PRK08560 tyrosyl-tRNA syntheta 100.0 4.2E-53 9.1E-58 402.1 19.6 227 60-300 6-237 (329)
5 COG0180 TrpS Tryptophanyl-tRNA 100.0 3.2E-53 6.8E-58 396.5 17.2 203 83-300 3-221 (314)
6 cd00806 TrpRS_core catalytic c 100.0 1.2E-51 2.6E-56 384.3 16.9 199 87-300 1-214 (280)
7 PRK13354 tyrosyl-tRNA syntheta 100.0 2E-50 4.4E-55 393.1 20.5 229 60-300 8-255 (410)
8 PRK05912 tyrosyl-tRNA syntheta 100.0 1.3E-49 2.7E-54 387.6 21.0 227 60-300 9-257 (408)
9 TIGR00233 trpS tryptophanyl-tR 100.0 1.3E-49 2.9E-54 377.8 17.5 202 84-300 1-215 (328)
10 cd00805 TyrRS_core catalytic c 100.0 2.7E-49 5.8E-54 366.6 15.9 200 87-300 2-219 (269)
11 cd00395 Tyr_Trp_RS_core cataly 100.0 1E-48 2.2E-53 363.3 15.4 202 87-300 1-223 (273)
12 PTZ00126 tyrosyl-tRNA syntheta 100.0 5.1E-48 1.1E-52 372.8 20.7 227 60-300 42-280 (383)
13 PRK12282 tryptophanyl-tRNA syn 100.0 1.3E-47 2.8E-52 364.6 15.7 199 86-300 3-218 (333)
14 PF00579 tRNA-synt_1b: tRNA sy 100.0 4.9E-48 1.1E-52 361.3 12.0 205 82-300 2-221 (292)
15 PRK00927 tryptophanyl-tRNA syn 100.0 2.4E-47 5.2E-52 363.2 15.9 196 87-300 3-218 (333)
16 PRK12556 tryptophanyl-tRNA syn 100.0 5.6E-47 1.2E-51 360.0 17.0 199 86-300 4-224 (332)
17 PLN02886 aminoacyl-tRNA ligase 100.0 9.3E-46 2E-50 355.9 17.1 198 86-300 47-276 (389)
18 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 8.4E-45 1.8E-49 350.6 17.9 223 60-300 7-254 (377)
19 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.5E-44 3.2E-49 367.9 20.5 227 60-300 8-245 (682)
20 PRK12283 tryptophanyl-tRNA syn 100.0 3.3E-43 7.2E-48 338.1 17.2 198 87-300 4-286 (398)
21 PRK12284 tryptophanyl-tRNA syn 100.0 4.1E-43 9E-48 340.0 17.4 200 85-300 2-224 (431)
22 COG0162 TyrS Tyrosyl-tRNA synt 100.0 6.6E-41 1.4E-45 323.4 18.3 217 59-293 7-239 (401)
23 KOG2713 Mitochondrial tryptoph 100.0 4.3E-39 9.3E-44 292.9 13.6 201 85-300 13-236 (347)
24 KOG2623 Tyrosyl-tRNA synthetas 100.0 4.8E-35 1E-39 275.9 10.8 222 59-292 34-287 (467)
25 KOG2144 Tyrosyl-tRNA synthetas 100.0 3.1E-34 6.8E-39 261.7 10.3 224 60-300 11-245 (360)
26 PTZ00348 tyrosyl-tRNA syntheta 99.9 5.9E-26 1.3E-30 231.9 12.6 174 112-300 401-579 (682)
27 cd00802 class_I_aaRS_core cata 99.4 1.9E-12 4E-17 108.9 10.0 65 208-282 78-143 (143)
28 cd00808 GluRS_core catalytic c 99.2 6.2E-11 1.3E-15 108.4 11.8 152 93-284 9-169 (239)
29 cd00418 GlxRS_core catalytic c 98.9 2.3E-08 4.9E-13 91.1 12.6 153 93-287 9-163 (230)
30 PRK00750 lysK lysyl-tRNA synth 98.9 3.2E-08 7E-13 99.8 14.5 55 234-291 237-293 (510)
31 cd00674 LysRS_core_class_I cat 98.8 1.5E-07 3.2E-12 90.8 14.3 199 83-291 18-288 (353)
32 TIGR00467 lysS_arch lysyl-tRNA 98.4 3.6E-06 7.8E-11 85.0 13.7 197 84-291 18-287 (515)
33 cd09287 GluRS_non_core catalyt 97.9 0.00011 2.4E-09 67.5 11.0 165 89-282 5-171 (240)
34 PRK04156 gltX glutamyl-tRNA sy 97.6 0.00091 2E-08 68.4 12.9 79 84-171 100-179 (567)
35 cd00807 GlnRS_core catalytic c 97.6 0.00065 1.4E-08 62.3 10.6 158 93-282 9-169 (238)
36 PRK14895 gltX glutamyl-tRNA sy 97.6 0.00081 1.7E-08 67.9 12.1 49 233-283 198-246 (513)
37 cd00672 CysRS_core catalytic c 97.5 0.00069 1.5E-08 61.1 10.1 77 83-160 19-106 (213)
38 PRK01611 argS arginyl-tRNA syn 97.5 0.00026 5.7E-09 71.5 8.1 61 233-294 275-338 (507)
39 TIGR00464 gltX_bact glutamyl-t 97.4 0.0012 2.7E-08 66.2 11.3 54 233-290 199-252 (470)
40 PRK05710 glutamyl-Q tRNA(Asp) 97.4 0.0026 5.7E-08 60.2 12.7 69 93-171 13-82 (299)
41 COG1384 LysS Lysyl-tRNA synthe 97.4 0.005 1.1E-07 61.8 14.9 94 84-181 19-142 (521)
42 PF01921 tRNA-synt_1f: tRNA sy 97.4 0.00074 1.6E-08 65.3 8.7 195 83-290 22-294 (360)
43 PRK01406 gltX glutamyl-tRNA sy 97.2 0.004 8.8E-08 62.6 12.3 54 233-290 209-262 (476)
44 TIGR03838 queuosine_YadB gluta 97.1 0.0099 2.2E-07 55.6 13.1 70 93-171 8-77 (272)
45 PLN03233 putative glutamate-tR 97.1 0.0047 1E-07 62.6 11.4 68 93-171 19-87 (523)
46 PTZ00402 glutamyl-tRNA synthet 97.1 0.0076 1.6E-07 61.9 12.8 71 91-171 58-129 (601)
47 PRK00260 cysS cysteinyl-tRNA s 96.8 0.012 2.5E-07 59.1 11.6 75 85-160 23-110 (463)
48 PLN02627 glutamyl-tRNA synthet 96.7 0.027 5.9E-07 57.3 13.3 78 85-171 45-130 (535)
49 cd00671 ArgRS_core catalytic c 96.4 0.0078 1.7E-07 53.9 6.5 45 236-282 164-211 (212)
50 PLN02859 glutamine-tRNA ligase 96.4 0.072 1.6E-06 56.4 14.3 91 71-171 249-340 (788)
51 PRK12410 glutamylglutaminyl-tR 96.4 0.053 1.1E-06 54.0 12.4 69 93-171 7-75 (433)
52 PRK12558 glutamyl-tRNA synthet 95.8 0.13 2.7E-06 51.5 12.1 68 93-171 10-78 (445)
53 COG0215 CysS Cysteinyl-tRNA sy 95.2 0.11 2.3E-06 52.0 9.2 72 86-158 23-106 (464)
54 TIGR00463 gltX_arch glutamyl-t 94.7 0.082 1.8E-06 54.2 7.1 137 10-171 31-169 (560)
55 PF00749 tRNA-synt_1c: tRNA sy 94.6 0.14 2.9E-06 48.9 7.9 69 93-171 9-78 (314)
56 cd00668 Ile_Leu_Val_MetRS_core 94.6 0.03 6.6E-07 52.9 3.4 55 234-291 229-286 (312)
57 PRK05347 glutaminyl-tRNA synth 94.2 0.28 6.1E-06 50.2 9.5 87 76-171 18-106 (554)
58 PTZ00437 glutaminyl-tRNA synth 93.8 0.15 3.1E-06 52.4 6.7 77 85-171 51-127 (574)
59 TIGR00440 glnS glutaminyl-tRNA 93.8 0.19 4.2E-06 51.1 7.5 70 93-171 8-77 (522)
60 COG0008 GlnS Glutamyl- and glu 93.7 0.15 3.3E-06 51.3 6.6 69 93-171 17-86 (472)
61 PLN02907 glutamate-tRNA ligase 93.4 0.3 6.4E-06 51.8 8.2 69 92-171 220-289 (722)
62 PRK00133 metG methionyl-tRNA s 92.6 0.44 9.5E-06 50.0 8.1 76 84-160 2-89 (673)
63 PRK14703 glutaminyl-tRNA synth 92.5 0.5 1.1E-05 50.4 8.4 86 77-171 21-108 (771)
64 PRK00390 leuS leucyl-tRNA synt 92.5 0.62 1.4E-05 50.0 9.3 76 83-160 31-119 (805)
65 cd00818 IleRS_core catalytic c 91.4 0.19 4.1E-06 48.3 3.6 54 234-291 255-312 (338)
66 TIGR00456 argS arginyl-tRNA sy 90.7 0.18 4E-06 51.8 2.9 57 235-295 332-389 (566)
67 KOG1147 Glutamyl-tRNA syntheta 90.6 0.77 1.7E-05 46.8 7.0 64 91-163 206-270 (712)
68 cd02156 nt_trans nucleotidyl t 90.5 0.8 1.7E-05 36.1 5.9 63 89-158 3-65 (105)
69 PLN02224 methionine-tRNA ligas 90.2 0.78 1.7E-05 47.8 7.0 94 63-160 51-156 (616)
70 COG0143 MetG Methionyl-tRNA sy 89.5 0.99 2.2E-05 46.4 7.0 75 84-159 5-91 (558)
71 TIGR00396 leuS_bact leucyl-tRN 89.3 2.2 4.7E-05 46.2 9.7 78 83-160 28-116 (842)
72 cd00812 LeuRS_core catalytic c 89.0 0.22 4.7E-06 47.3 1.8 52 236-291 229-288 (314)
73 cd00817 ValRS_core catalytic c 88.9 0.32 7E-06 47.5 2.9 55 234-291 299-356 (382)
74 PF09334 tRNA-synt_1g: tRNA sy 88.8 1.3 2.8E-05 43.6 7.0 66 94-160 10-86 (391)
75 PRK12451 arginyl-tRNA syntheta 88.3 0.41 8.8E-06 49.3 3.3 58 234-295 328-388 (562)
76 TIGR00398 metG methionyl-tRNA 87.2 1.2 2.6E-05 45.1 6.0 66 94-160 10-86 (530)
77 PRK11893 methionyl-tRNA synthe 87.0 1.9 4.1E-05 43.3 7.2 75 85-160 2-88 (511)
78 TIGR00435 cysS cysteinyl-tRNA 86.6 2.7 5.9E-05 42.3 8.0 78 82-160 19-107 (465)
79 PRK12268 methionyl-tRNA synthe 86.5 1.8 3.9E-05 44.2 6.8 73 87-160 5-91 (556)
80 PRK11893 methionyl-tRNA synthe 85.7 0.45 9.7E-06 47.8 1.9 51 235-291 258-312 (511)
81 cd00814 MetRS_core catalytic c 83.8 2.9 6.2E-05 39.7 6.4 66 94-160 11-87 (319)
82 PRK13804 ileS isoleucyl-tRNA s 83.6 0.98 2.1E-05 49.4 3.5 53 234-289 586-641 (961)
83 TIGR00392 ileS isoleucyl-tRNA 82.6 0.96 2.1E-05 48.8 2.9 55 234-291 567-624 (861)
84 cd00814 MetRS_core catalytic c 82.4 0.84 1.8E-05 43.3 2.1 52 236-291 240-293 (319)
85 PRK05743 ileS isoleucyl-tRNA s 82.2 1.2 2.6E-05 48.5 3.5 52 234-289 548-603 (912)
86 PRK12267 methionyl-tRNA synthe 81.5 5.2 0.00011 41.8 7.8 76 84-160 4-91 (648)
87 PF00133 tRNA-synt_1: tRNA syn 81.5 1.1 2.5E-05 46.3 2.9 54 234-290 517-573 (601)
88 COG0018 ArgS Arginyl-tRNA synt 81.4 1.8 3.9E-05 44.8 4.2 65 233-298 337-403 (577)
89 cd00812 LeuRS_core catalytic c 80.9 2.7 5.8E-05 39.9 5.0 73 87-160 3-87 (314)
90 PF01406 tRNA-synt_1e: tRNA sy 80.6 6.2 0.00014 37.5 7.2 74 84-159 7-93 (300)
91 PLN02286 arginine-tRNA ligase 80.4 2 4.3E-05 44.5 4.1 60 233-295 330-395 (576)
92 PLN02610 probable methionyl-tR 80.0 6.7 0.00014 42.3 8.1 76 84-160 17-105 (801)
93 PF06543 Lac_bphage_repr: Lact 79.9 1.4 3.1E-05 30.3 1.9 30 27-57 17-46 (49)
94 TIGR00398 metG methionyl-tRNA 79.7 1.6 3.4E-05 44.3 3.2 54 234-291 285-340 (530)
95 PRK13208 valS valyl-tRNA synth 79.3 1.6 3.6E-05 46.7 3.3 54 234-291 489-546 (800)
96 PF09334 tRNA-synt_1g: tRNA sy 79.0 0.89 1.9E-05 44.7 1.1 53 233-291 284-340 (391)
97 PLN02943 aminoacyl-tRNA ligase 77.9 11 0.00023 41.5 9.0 61 60-129 72-136 (958)
98 TIGR00422 valS valyl-tRNA synt 77.5 2.1 4.5E-05 46.3 3.4 54 234-291 481-538 (861)
99 TIGR00422 valS valyl-tRNA synt 77.4 12 0.00027 40.4 9.3 61 60-129 17-81 (861)
100 PRK06039 ileS isoleucyl-tRNA s 77.0 2.3 5E-05 46.7 3.6 54 234-290 548-604 (975)
101 PLN02563 aminoacyl-tRNA ligase 76.8 13 0.00029 40.9 9.3 78 83-160 109-198 (963)
102 PRK12268 methionyl-tRNA synthe 76.6 1.7 3.6E-05 44.4 2.3 53 235-291 291-347 (556)
103 PRK12267 methionyl-tRNA synthe 76.4 1.5 3.3E-05 45.8 1.9 53 235-291 258-312 (648)
104 COG0495 LeuS Leucyl-tRNA synth 76.3 5 0.00011 43.2 5.8 93 60-161 17-122 (814)
105 cd00817 ValRS_core catalytic c 75.9 8.1 0.00018 37.7 6.8 44 85-129 2-50 (382)
106 cd02168 NMNAT_Nudix Nicotinami 75.9 20 0.00043 31.4 8.6 69 88-166 3-73 (181)
107 COG0060 IleS Isoleucyl-tRNA sy 75.7 1.9 4.1E-05 46.9 2.4 58 234-298 558-618 (933)
108 cd00818 IleRS_core catalytic c 75.5 7.2 0.00016 37.4 6.2 43 85-128 2-49 (338)
109 cd00668 Ile_Leu_Val_MetRS_core 75.3 7.4 0.00016 36.6 6.2 43 86-129 2-49 (312)
110 PRK05729 valS valyl-tRNA synth 75.0 2.5 5.4E-05 45.8 3.2 54 234-291 476-533 (874)
111 PRK14900 valS valyl-tRNA synth 74.6 2.7 5.8E-05 46.6 3.4 53 235-291 495-551 (1052)
112 PLN02843 isoleucyl-tRNA synthe 74.1 2.9 6.2E-05 46.0 3.4 53 234-290 567-623 (974)
113 PRK12418 cysteinyl-tRNA synthe 73.6 2.9 6.3E-05 41.1 3.0 68 89-157 14-92 (384)
114 PRK14536 cysS cysteinyl-tRNA s 72.5 14 0.0003 37.6 7.6 75 85-160 23-119 (490)
115 PRK12418 cysteinyl-tRNA synthe 72.0 13 0.00028 36.6 7.1 25 264-291 250-274 (384)
116 PLN02943 aminoacyl-tRNA ligase 71.5 2.9 6.3E-05 45.8 2.7 54 234-291 539-596 (958)
117 PLN02946 cysteine-tRNA ligase 70.9 12 0.00026 38.6 6.9 73 85-158 80-164 (557)
118 TIGR03447 mycothiol_MshC cyste 70.6 14 0.0003 36.7 7.0 70 88-158 40-120 (411)
119 PRK12300 leuS leucyl-tRNA synt 69.5 3.7 7.9E-05 44.7 2.9 24 263-290 566-589 (897)
120 PLN02224 methionine-tRNA ligas 69.0 3.6 7.8E-05 43.0 2.6 52 236-291 326-379 (616)
121 PRK05729 valS valyl-tRNA synth 68.7 20 0.00043 39.0 8.3 60 60-129 21-84 (874)
122 PRK00133 metG methionyl-tRNA s 68.6 4.8 0.0001 42.4 3.5 50 236-291 289-342 (673)
123 PLN02959 aminoacyl-tRNA ligase 68.6 4.6 0.0001 44.9 3.5 16 275-291 716-731 (1084)
124 TIGR03447 mycothiol_MshC cyste 68.1 4.2 9.2E-05 40.4 2.8 25 263-290 276-300 (411)
125 PLN02882 aminoacyl-tRNA ligase 67.9 4.5 9.7E-05 45.3 3.2 53 233-289 569-625 (1159)
126 PTZ00399 cysteinyl-tRNA-synthe 67.2 13 0.00028 39.2 6.3 63 97-159 72-147 (651)
127 PF00750 tRNA-synt_1d: tRNA sy 66.7 2.1 4.6E-05 41.4 0.4 60 233-294 241-304 (354)
128 PF01406 tRNA-synt_1e: tRNA sy 65.7 2.2 4.8E-05 40.5 0.3 50 237-291 212-265 (300)
129 PRK13208 valS valyl-tRNA synth 65.3 9 0.00019 41.1 4.8 61 60-129 22-86 (800)
130 PRK14534 cysS cysteinyl-tRNA s 64.8 23 0.00049 36.0 7.3 75 85-160 21-117 (481)
131 TIGR00435 cysS cysteinyl-tRNA 64.0 4.5 9.7E-05 40.7 2.1 52 236-291 224-278 (465)
132 PRK14535 cysS cysteinyl-tRNA s 63.7 19 0.00042 38.1 6.7 75 85-160 248-334 (699)
133 KOG0435 Leucyl-tRNA synthetase 63.3 18 0.0004 38.2 6.3 59 59-126 40-102 (876)
134 COG0143 MetG Methionyl-tRNA sy 63.0 5 0.00011 41.4 2.3 53 236-291 293-346 (558)
135 KOG2007 Cysteinyl-tRNA synthet 62.4 16 0.00034 37.3 5.5 73 83-156 53-143 (586)
136 PLN02381 valyl-tRNA synthetase 62.3 6.6 0.00014 43.6 3.2 54 234-291 611-668 (1066)
137 TIGR00395 leuS_arch leucyl-tRN 61.9 5.2 0.00011 43.8 2.3 53 234-291 576-633 (938)
138 PTZ00419 valyl-tRNA synthetase 61.5 18 0.00039 39.9 6.4 65 60-129 40-108 (995)
139 PLN02610 probable methionyl-tR 60.8 5.3 0.00011 43.0 2.1 52 236-291 306-361 (801)
140 PTZ00419 valyl-tRNA synthetase 60.7 7.3 0.00016 42.9 3.2 53 234-290 541-597 (995)
141 PLN02563 aminoacyl-tRNA ligase 60.3 4.9 0.00011 44.1 1.8 12 277-289 723-734 (963)
142 COG0525 ValS Valyl-tRNA synthe 59.8 8 0.00017 41.9 3.2 51 234-288 481-535 (877)
143 COG0008 GlnS Glutamyl- and glu 57.5 9.4 0.0002 38.6 3.1 54 233-290 208-261 (472)
144 PLN02381 valyl-tRNA synthetase 57.4 25 0.00054 39.2 6.5 61 60-129 112-176 (1066)
145 PRK05379 bifunctional nicotina 56.3 52 0.0011 31.6 7.9 55 84-145 6-62 (340)
146 PRK13793 nicotinamide-nucleoti 55.4 1.3E+02 0.0027 27.0 9.6 57 85-149 5-64 (196)
147 PTZ00427 isoleucine-tRNA ligas 54.8 13 0.00028 41.9 3.9 51 233-288 675-730 (1205)
148 COG0525 ValS Valyl-tRNA synthe 52.5 11 0.00025 40.7 2.9 35 94-129 44-81 (877)
149 PF00133 tRNA-synt_1: tRNA syn 50.9 25 0.00053 36.5 5.0 44 82-126 21-68 (601)
150 TIGR00396 leuS_bact leucyl-tRN 49.7 7.2 0.00016 42.2 0.9 14 277-291 604-617 (842)
151 PRK14536 cysS cysteinyl-tRNA s 48.8 11 0.00024 38.3 2.0 20 269-291 273-292 (490)
152 PLN02946 cysteine-tRNA ligase 48.2 6.6 0.00014 40.5 0.3 25 263-291 312-336 (557)
153 cd02166 NMNAT_Archaea Nicotina 47.2 1.8E+02 0.0039 24.7 9.4 71 88-169 3-76 (163)
154 PRK00777 phosphopantetheine ad 46.2 95 0.0021 26.3 7.1 46 235-282 92-137 (153)
155 COG5309 Exo-beta-1,3-glucanase 45.4 2.1E+02 0.0046 27.2 9.6 114 38-159 57-172 (305)
156 PRK00390 leuS leucyl-tRNA synt 45.1 11 0.00025 40.5 1.6 13 277-290 570-582 (805)
157 PTZ00399 cysteinyl-tRNA-synthe 44.9 12 0.00026 39.3 1.7 50 236-291 273-328 (651)
158 PRK14535 cysS cysteinyl-tRNA s 44.7 8.6 0.00019 40.6 0.5 25 263-291 497-521 (699)
159 PF00701 DHDPS: Dihydrodipicol 44.3 2.6E+02 0.0056 25.8 10.7 85 84-186 69-155 (289)
160 PRK14900 valS valyl-tRNA synth 44.2 22 0.00047 39.6 3.5 62 60-129 31-96 (1052)
161 PF00750 tRNA-synt_1d: tRNA sy 43.5 35 0.00077 32.9 4.6 41 88-129 25-70 (354)
162 TIGR00456 argS arginyl-tRNA sy 43.5 28 0.0006 35.9 4.0 42 86-128 115-161 (566)
163 PRK14534 cysS cysteinyl-tRNA s 42.3 15 0.00033 37.3 1.8 24 264-291 269-292 (481)
164 TIGR00234 tyrS tyrosyl-tRNA sy 41.1 16 0.00035 35.8 1.8 44 245-289 195-243 (377)
165 PLN02843 isoleucyl-tRNA synthe 40.8 73 0.0016 35.2 6.9 44 82-126 30-77 (974)
166 PF00749 tRNA-synt_1c: tRNA sy 40.0 25 0.00055 33.5 2.9 52 233-286 201-252 (314)
167 PRK06039 ileS isoleucyl-tRNA s 38.6 54 0.0012 36.2 5.5 60 60-126 23-86 (975)
168 PF06574 FAD_syn: FAD syntheta 36.9 87 0.0019 26.7 5.4 44 83-129 4-47 (157)
169 COG0018 ArgS Arginyl-tRNA synt 36.3 42 0.00091 34.9 4.0 39 89-129 123-167 (577)
170 KOG1149 Glutamyl-tRNA syntheta 36.1 96 0.0021 31.3 6.2 43 86-129 34-76 (524)
171 TIGR00395 leuS_arch leucyl-tRN 35.2 54 0.0012 36.1 4.8 54 60-123 10-67 (938)
172 KOG0432 Valyl-tRNA synthetase 34.9 39 0.00084 36.8 3.5 50 235-288 550-603 (995)
173 KOG0433 Isoleucyl-tRNA synthet 34.8 36 0.00078 36.5 3.2 52 233-287 568-622 (937)
174 TIGR00392 ileS isoleucyl-tRNA 34.5 38 0.00083 36.7 3.5 43 83-126 35-81 (861)
175 KOG1148 Glutaminyl-tRNA synthe 33.2 1.4E+02 0.0031 31.3 7.0 71 88-171 249-324 (764)
176 TIGR00125 cyt_tran_rel cytidyl 32.8 74 0.0016 22.1 3.8 27 97-127 9-35 (66)
177 TIGR00124 cit_ly_ligase [citra 32.7 96 0.0021 29.9 5.6 98 29-150 94-195 (332)
178 TIGR01527 arch_NMN_Atrans nico 32.5 1.7E+02 0.0037 25.2 6.6 48 88-142 3-52 (165)
179 COG0495 LeuS Leucyl-tRNA synth 30.9 27 0.00059 37.7 1.6 16 275-291 577-592 (814)
180 COG0414 PanC Panthothenate syn 30.2 1E+02 0.0022 29.1 5.1 35 69-107 6-41 (285)
181 PRK12451 arginyl-tRNA syntheta 29.7 60 0.0013 33.5 3.9 40 89-129 119-163 (562)
182 cd02064 FAD_synthetase_N FAD s 29.4 80 0.0017 27.2 4.1 33 97-129 9-41 (180)
183 PF01467 CTP_transf_2: Cytidyl 28.6 1.5E+02 0.0033 23.6 5.5 44 97-143 7-53 (157)
184 cd02173 ECT CTP:phosphoethanol 28.2 1E+02 0.0023 26.1 4.5 29 97-129 12-40 (152)
185 PRK13964 coaD phosphopantethei 27.8 2E+02 0.0043 24.2 6.1 50 86-144 3-53 (140)
186 COG1907 Predicted archaeal sug 27.7 41 0.00089 32.1 2.0 53 34-95 216-268 (312)
187 PRK15458 tagatose 6-phosphate 27.7 1.3E+02 0.0028 30.1 5.6 61 88-158 58-122 (426)
188 PF08013 Tagatose_6_P_K: Tagat 26.5 41 0.00089 33.5 1.9 50 113-164 74-126 (424)
189 PLN02286 arginine-tRNA ligase 26.4 62 0.0013 33.6 3.3 39 89-129 123-167 (576)
190 PTZ00427 isoleucine-tRNA ligas 26.1 75 0.0016 36.1 4.0 62 60-128 84-149 (1205)
191 TIGR02810 agaZ_gatZ D-tagatose 26.1 1.6E+02 0.0034 29.5 5.8 61 88-158 54-118 (420)
192 PRK05743 ileS isoleucyl-tRNA s 26.0 65 0.0014 35.3 3.5 45 83-128 48-96 (912)
193 KOG0432 Valyl-tRNA synthetase 25.7 62 0.0013 35.3 3.1 34 95-129 87-123 (995)
194 COG0196 RibF FAD synthase [Coe 25.6 1.2E+02 0.0026 29.0 4.8 42 85-129 16-57 (304)
195 KOG2047 mRNA splicing factor [ 25.0 59 0.0013 34.4 2.7 42 26-72 228-269 (835)
196 PRK05627 bifunctional riboflav 24.7 89 0.0019 29.7 3.8 41 86-129 15-55 (305)
197 TIGR03569 NeuB_NnaB N-acetylne 24.7 5.2E+02 0.011 24.9 9.0 95 14-123 91-199 (329)
198 PRK13663 hypothetical protein; 24.6 34 0.00075 34.2 1.0 47 6-58 225-273 (493)
199 cd02164 PPAT_CoAS phosphopante 24.3 2.4E+02 0.0052 23.6 6.0 32 95-129 7-38 (143)
200 PRK15052 D-tagatose-1,6-bispho 23.2 1.9E+02 0.0041 28.9 5.8 61 88-158 55-119 (421)
201 TIGR02199 rfaE_dom_II rfaE bif 22.6 2.7E+02 0.0058 23.1 6.0 41 83-129 10-50 (144)
202 PRK00168 coaD phosphopantethei 22.1 3.4E+02 0.0073 22.9 6.6 47 86-142 3-51 (159)
203 PLN02660 pantoate--beta-alanin 22.1 93 0.002 29.5 3.3 46 242-294 157-202 (284)
204 PLN02959 aminoacyl-tRNA ligase 22.0 52 0.0011 36.8 1.8 29 94-123 56-87 (1084)
205 cd02167 NMNAT_NadR Nicotinamid 21.9 2.9E+02 0.0062 23.4 6.1 50 88-144 3-54 (158)
206 COG4868 Uncharacterized protei 21.8 43 0.00093 32.5 1.0 43 10-58 229-273 (493)
207 PRK13477 bifunctional pantoate 21.4 1.5E+02 0.0033 30.4 4.9 36 67-107 4-39 (512)
208 PLN02882 aminoacyl-tRNA ligase 21.2 98 0.0021 35.0 3.8 43 83-126 37-83 (1159)
209 PF14117 DUF4287: Domain of un 20.8 82 0.0018 22.8 2.1 18 45-62 4-21 (61)
No 1
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-100 Score=696.61 Aligned_cols=292 Identities=68% Similarity=1.227 Sum_probs=286.2
Q ss_pred hhhccCcccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCce
Q 022242 9 REEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKF 86 (300)
Q Consensus 9 ~~~~~~~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~ 86 (300)
.++.+|++||||+|++ ..+|||||||.+|||++||+++++|+|++||++||+|+|||+||+|||++.||+++|+|+||
T Consensus 7 ~~~~~Eq~vtPW~V~~~~~~~IDYdklI~~FG~~k~deeli~R~ek~tg~~~h~flRrg~fFshRDf~~iLd~~eq~kpF 86 (397)
T KOG2145|consen 7 ATEVEEQRVTPWDVETSSADGIDYDKLIVQFGCSKIDEELIDRFEKLTGKPPHHFLRRGIFFSHRDFNLILDAYEQGKPF 86 (397)
T ss_pred ccchhhcccCcceeecccCCCccHHHHHHHhCcccCCHHHHHHHHHhcCCCchHHhhhcceeecccHHHHHHHHHcCCce
Confidence 4677899999999987 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 022242 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 166 (300)
Q Consensus 87 ~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ 166 (300)
|+|||++||+++|||||++|+++++|||++|++|++|+++|+||++|+.++.|++.++++||+++|+|+||||++|+||+
T Consensus 87 yLYTGRGpSS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfIFs 166 (397)
T KOG2145|consen 87 YLYTGRGPSSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIFS 166 (397)
T ss_pred EEEeCCCCCccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEEEe
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred ccccCCc-ccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHH
Q 022242 167 DFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 245 (300)
Q Consensus 167 ns~~~~~-~~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~ 245 (300)
|.+|++. .||.++++|+|++|.|+++++|||+++.++|++.||.+|||++|++|||+|+..+.|++|||||++|||||+
T Consensus 167 n~~y~g~~~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyF 246 (397)
T KOG2145|consen 167 NLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYF 246 (397)
T ss_pred chhhccCcHHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCChHH
Confidence 9999974 999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 246 ~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
|||||+|+|++++||+++|+.|+|.|||+++|||+|+||++|||+|++++|++||
T Consensus 247 RmtRDvA~rlg~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI 301 (397)
T KOG2145|consen 247 RMTRDVAPRLGYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKI 301 (397)
T ss_pred HhhhhhhhhhCCCCcceeehhhchhhhCcccccccCCCCceEEecCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997
No 2
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.6e-90 Score=662.84 Aligned_cols=286 Identities=88% Similarity=1.438 Sum_probs=274.4
Q ss_pred cccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceEEEEec
Q 022242 15 QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (300)
Q Consensus 15 ~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~ 92 (300)
+.||||+|++ ...|||+|||++|||++||+++++|++++||+++|+|+|||+||+|||++.+++++++|+++++||||
T Consensus 1 ~~v~pw~v~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~h~~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG~ 80 (383)
T PLN02486 1 QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRDLEEILDAYEKGEKFYLYTGR 80 (383)
T ss_pred CccCCccccCCCCCCcCHHHHHHHhCCCcCCHHHHHHHHHhcCCCCCcccccceeeeccCHHHHHHHHhcCCCeEEEeCC
Confidence 4699999994 24799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCC
Q 022242 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~ 172 (300)
+|||++|||||++|+++++|||+++|++++|+||||++++++.+++|++++++++|+++|+|+||||+||+||+|++|.+
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~ 160 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVG 160 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHh
Confidence 99998899999999999999999999999999999999998879999999999999999999999999999999999986
Q ss_pred cccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHH
Q 022242 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252 (300)
Q Consensus 173 ~~~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla 252 (300)
..||.+++++++++|++++++++||.++.++|+++||++||||+|+.+||+++....+++|+||||+|||||++||||+|
T Consensus 161 ~~~~~~~~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia 240 (383)
T PLN02486 161 GAFYKNMVKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVA 240 (383)
T ss_pred HhHHHHHHHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHH
Confidence 67999999999999999999999998899999999999999999999999998765568999999999999999999999
Q ss_pred HHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 253 ~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
+|+|+.+|+.++++++|+|+|+++|||||.|||+|||+|+|++|++||
T Consensus 241 ~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI 288 (383)
T PLN02486 241 PRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKI 288 (383)
T ss_pred HHhCCCCcceeccccccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHH
Confidence 999999999999999999999878999999989999999999999997
No 3
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.1e-79 Score=584.35 Aligned_cols=270 Identities=42% Similarity=0.738 Sum_probs=254.8
Q ss_pred ccCcccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceEEEEe
Q 022242 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG 91 (300)
Q Consensus 12 ~~~~~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG 91 (300)
++++.||||+|++ .+||+||+++||++|||+++++ +++ +|+|+|||+||+|||++.+++++++|+++++|||
T Consensus 1 ~~~~~v~pw~~~~--~~dy~kl~~~fg~~~~~~~~~~-~~~-----~h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG 72 (368)
T PRK12285 1 EDEFMVTPWEVSG--IVDYDKLFEEFGIEPFTEVLPE-LPE-----PHPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTG 72 (368)
T ss_pred CCCceeCCCcCcC--cccHHHHHHHhCCCcCChHHHh-ccc-----cchHHhcCeeeecCCHHHHHHHHhcCCCeEEEEc
Confidence 3678999999998 8999999999999999999999 998 5999999999999999999999999999999999
Q ss_pred cCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 92 RGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 92 ~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
++||| +|||||++++++++|||+ +|++++|+|||+||+++|..+++++++++++++++|+||||||+|++||.||+|.
T Consensus 73 ~~PSG-~lHLGh~~~~~~~~~lQ~-~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~ 150 (368)
T PRK12285 73 FMPSG-PMHIGHKMVFDELKWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENI 150 (368)
T ss_pred cCCCC-CccHHHHHHHHHHHHHHh-cCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchH
Confidence 99998 899999999999999999 5899999999999998877999999999999999999999999999999999996
Q ss_pred CcccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHH
Q 022242 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251 (300)
Q Consensus 172 ~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdl 251 (300)
.+|..++.+++.+|++++++.+||++++|+|+++||+|||||+| ||+++. ...+|+||||.||+||++||||+
T Consensus 151 --~~~~l~~~l~~~~t~~~l~r~~~f~~~~~~g~~~YP~lQaADil---~~~~~~--~~~~~lvPvG~DQ~~h~~ltRdi 223 (368)
T PRK12285 151 --KVYDLAFELAKKVNFSELKAIYGFTGETNIGHIFYPATQAADIL---HPQLEE--GPKPTLVPVGIDQDPHIRLTRDI 223 (368)
T ss_pred --HHHHHHHHHHhhCcHHHHHHhhCCCCCCchhhhhhhHHHHHHHH---hhcccc--cCCceEEEeccchHHHHHHHHHH
Confidence 48888899999999999999999999999999999999999988 566653 23569999999999999999999
Q ss_pred HHHh----CCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 252 APRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 252 a~r~----~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
|+|+ |+++|++++++++|+|+| +|||||.|+|+|||+|+|++|++||
T Consensus 224 A~r~n~~~gf~~P~~l~~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI 274 (368)
T PRK12285 224 AERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKI 274 (368)
T ss_pred HHHHhhhcCCCCchhHhhhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHH
Confidence 9999 889999999999999998 7999999999999999999999997
No 4
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.2e-53 Score=402.13 Aligned_cols=227 Identities=27% Similarity=0.378 Sum_probs=203.4
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHH
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e 139 (300)
.+++||...... .++|.+++++++++++|+|++||| .|||||+++++.++|||++ |+.++|+|||+||++.++.+++
T Consensus 6 ~~~~~~~~e~~~-~~el~~~l~~~~~~~v~~G~~PTG-~lHLG~~~~~~~~~~lq~~-g~~~~i~IaD~ha~~~~~~~~~ 82 (329)
T PRK08560 6 ELITRNTEEVVT-EEELRELLESKEEPKAYIGFEPSG-KIHLGHLLTMNKLADLQKA-GFKVTVLLADWHAYLNDKGDLE 82 (329)
T ss_pred HHHHhCceeecC-HHHHHHHHhCCCCCEEEEccCCCC-cchhhhhHHHHHHHHHHHC-CCeEEEEEccchhhcCCCCCHH
Confidence 457788665444 577888888789999999999999 6999999999999999996 8899999999999887668999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEeccccCCc-ccHHHHHHHHhhcCHHHHHHh---hCCC-CCccccccchhhhhcC
Q 022242 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGI---FGFT-GEDHIGKVSFPPVQAV 214 (300)
Q Consensus 140 ~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~-~~~~~~~~l~k~~t~~~~~~~---~g~~-~~~~~g~~~YP~lQaa 214 (300)
++++++++++++|+|||+||+|+.||.||+|..+ .||..++++++++|++++++. +++. ++.++|+|+||+||||
T Consensus 83 ~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~YP~lqaa 162 (329)
T PRK08560 83 EIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQVA 162 (329)
T ss_pred HHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865 588999999999999999984 3443 3469999999999999
Q ss_pred CCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHH
Q 022242 215 PSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 294 (300)
Q Consensus 215 d~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~ 294 (300)
| ++.+++ .+||+|.||+||+++|||+|+|+|+++|..+++++||+|+|+++|||||.|+|+|||+|+|+
T Consensus 163 D--------il~~~a---d~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~ 231 (329)
T PRK08560 163 D--------IFYLDV---DIAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPE 231 (329)
T ss_pred H--------HHHhCC---CEEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCCHH
Confidence 6 455665 47899999999999999999999999999999999999999767999999999999999999
Q ss_pred HHhccC
Q 022242 295 AIKNKV 300 (300)
Q Consensus 295 ~i~~KI 300 (300)
+|++||
T Consensus 232 ~I~~KI 237 (329)
T PRK08560 232 EIRRKI 237 (329)
T ss_pred HHHHHH
Confidence 999997
No 5
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-53 Score=396.46 Aligned_cols=203 Identities=29% Similarity=0.421 Sum_probs=182.8
Q ss_pred CCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCH-HHHHHHHHHHHHHHHHcCCCCCc
Q 022242 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV-EESQRLARENAKDIIACGFDVTK 161 (300)
Q Consensus 83 ~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~-e~i~~~~~~~~~~iiA~G~dp~k 161 (300)
..+++||||++||| .|||||+++++..+|.|+.++..+++.|+|+||++++..++ +++++++++++++|+||||||+|
T Consensus 3 ~~~~~vlSG~~PSG-~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k 81 (314)
T COG0180 3 MKKFRVLSGIQPSG-KLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEK 81 (314)
T ss_pred CCCceEEecCCCCC-CcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccc
Confidence 46789999999999 69999999999998866654468899999999988876333 88999999999999999999999
Q ss_pred eEEEeccccCCcccHHHHHHHHhhcCHHHHHHhhCCCCCcc-------ccccchhhhhcCCCCCCCccccccCCCCccee
Q 022242 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDH-------IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 234 (300)
Q Consensus 162 t~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~~-------~g~~~YP~lQaad~~~~~f~~i~~~~~~~~cl 234 (300)
++||.||++++ .+...+.++..++++++.+..+|++..+ +|.|+||+||||| ||.+++ |+
T Consensus 82 ~~if~QS~v~e--~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~~~~~~Gl~~YPvlqAAD--------ILl~~a---~~ 148 (314)
T COG0180 82 STIFLQSEVPE--HAELAWLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAAD--------ILLYQA---TL 148 (314)
T ss_pred cEEEEccCchH--HHHHHHHHHccCcHHHHHhhcCcchhhhcccccccccchhccHHHHHH--------hhhccC---Ce
Confidence 99999999864 6777788999999999999999876555 9999999999996 566666 99
Q ss_pred eccccCchhHHHHHHHHHHHhC------CCCCceeecc--cccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 235 IPCAIDQDPYFRMTRDVAPRIG------YHKPALIESS--FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 235 vp~G~DQd~~~~l~rdla~r~~------~~kp~~i~~~--~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
||||.||+||+|||||||+||| +++|..+++. ++|+|+|+ +|||||+|||+|+|+|+|++|++||
T Consensus 149 VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI 221 (314)
T COG0180 149 VPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKI 221 (314)
T ss_pred eccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHH
Confidence 9999999999999999999999 7899999988 99999998 9999999999999999999999997
No 6
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=1.2e-51 Score=384.27 Aligned_cols=199 Identities=41% Similarity=0.642 Sum_probs=183.2
Q ss_pred EEEEecCCCCCCcchhhhHH-HHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 022242 87 YLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (300)
Q Consensus 87 ~vytG~~PTg~~lHlGhli~-~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~ 165 (300)
++|||++||| +|||||+++ +...++||++ |+.++|+|||+|+++.+..+++++++++++++++|+|+||||+|++||
T Consensus 1 ~i~tG~~PTG-~lHLG~~~~al~~~~~lQ~a-g~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~ 78 (280)
T cd00806 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIF 78 (280)
T ss_pred CEEEeeCCCc-hhhHHHHHHHHHHHHHHHhC-CCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEE
Confidence 4899999999 999999999 7788899997 889999999999987665799999999999999999999999999999
Q ss_pred eccccCCcccHHHHHHHHhhcCHHHHHHhhCCCC------CccccccchhhhhcCCCCCCCccccccCCCCcceeecccc
Q 022242 166 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG------EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239 (300)
Q Consensus 166 ~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~~------~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~ 239 (300)
.||+|. .++...+.+++.+|++++++..+|++ +.++|+|+||+|||||+ +.++. |+||+|.
T Consensus 79 ~qS~~~--~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaaDi--------l~~~~---~~vpvG~ 145 (280)
T cd00806 79 FQSDVP--EHYELAWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAADI--------LLYKA---CLVPVGI 145 (280)
T ss_pred EcCCcH--HHHHHHHHHhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHhhh--------hhccC---CEEeecc
Confidence 999996 57788888999999999999888765 88999999999999974 44555 9999999
Q ss_pred CchhHHHHHHHHHHHhC------CCCCceeec--ccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 240 DQDPYFRMTRDVAPRIG------YHKPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 240 DQd~~~~l~rdla~r~~------~~kp~~i~~--~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
||+||++++||+|+|+| +++|..+++ ++||+|+|+++|||||.++|+|||+|+|++|++||
T Consensus 146 DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI 214 (280)
T cd00806 146 DQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKI 214 (280)
T ss_pred ccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHH
Confidence 99999999999999999 689999998 99999999768999999889999999999999997
No 7
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-50 Score=393.09 Aligned_cols=229 Identities=23% Similarity=0.291 Sum_probs=197.5
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEE------Eeccc-ccc
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQ------LTDDE-KCM 132 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~------I~D~~-~~~ 132 (300)
.|.+||++++|++++++.+.+++++++++|+||+|||++|||||++++++++|||++++.+++++ |+||+ +..
T Consensus 8 ~l~~Rg~~~~~~~~~~l~~~~~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~ 87 (410)
T PRK13354 8 QLKWRGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSK 87 (410)
T ss_pred HHHHcCCchhcCCHHHHHHHHhcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCCeEEEEEcccccccCCCCcccc
Confidence 56679999999999999988888899999999999998999999999999999999855555444 56666 555
Q ss_pred ccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCCcccHHHHH-HHHhhcCHHHHHHh------hCCCCCcccc
Q 022242 133 WKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI------FGFTGEDHIG 204 (300)
Q Consensus 133 ~r~-l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~-~l~k~~t~~~~~~~------~g~~~~~~~g 204 (300)
+|+ ++.|++++|+.++.+++.+ |+||+++.|++|++|+++..|..++ ++++++|+++|+++ ++.+++++++
T Consensus 88 ~R~~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ 166 (410)
T PRK13354 88 ERKLLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFT 166 (410)
T ss_pred cccCCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchh
Confidence 566 8999999999987777766 8999999999999999888889999 59999999999874 2224578999
Q ss_pred ccchhhhhcCCCCCCCccccccCCCCcceee-ccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCC
Q 022242 205 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 283 (300)
Q Consensus 205 ~~~YP~lQaad~~~~~f~~i~~~~~~~~clv-p~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p 283 (300)
+|+||+|||||++ +++ .+++|.+ |+|.||++|++++||+|+|+|..+|..++.|+||+++| +|||||.
T Consensus 167 ef~YpllQa~D~~-----~l~---~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG--~KMsKS~- 235 (410)
T PRK13354 167 EFFYPLLQAYDFV-----HLN---RKEDVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADG--TKMGKSA- 235 (410)
T ss_pred hhccHHHHhhhHH-----HHh---ccCCCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCC--CccCCCC-
Confidence 9999999999854 332 2455766 69999999999999999999998898888888888887 5999998
Q ss_pred CCeeecCCC---HHHHhccC
Q 022242 284 NSAIYVTDS---AKAIKNKV 300 (300)
Q Consensus 284 ~saI~L~D~---p~~i~~KI 300 (300)
+|+|||+|+ |+++++||
T Consensus 236 ~naI~L~d~~tsp~~i~qki 255 (410)
T PRK13354 236 GGAIWLDPEKTSPYEFYQFW 255 (410)
T ss_pred CCceeccCCCCCHHHHHHHH
Confidence 789999999 99999986
No 8
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.3e-49 Score=387.64 Aligned_cols=227 Identities=22% Similarity=0.267 Sum_probs=192.9
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEe-------ccc-cc
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-------DDE-KC 131 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~-------D~~-~~ 131 (300)
.|.+||+++.|+|++++++.++ ++++++|+||+|||++|||||+++++.++|||++++. ++++|| ||+ +.
T Consensus 9 ~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~dPTg~slHlGhlv~l~~l~~lQ~~G~~-~~~ligd~ta~igDpsgk~ 86 (408)
T PRK05912 9 ELKERGLIEQITDEEELEEKLA-KEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDAGHK-PIALIGGFTGMIGDPSGKS 86 (408)
T ss_pred HHHhCCCeeecCCHHHHHHHhh-CCCCEEEEeecCCCCCccHHhHHHHHHHHHHHHCCCc-EEEEEcCceeEcCCCCCCc
Confidence 5677999999999999999988 5899999999999988999999999999999997444 455544 555 44
Q ss_pred cccC-CCHHHHHHHHHHHHHHHHHcCCCCCc--eEEEeccccCCcccHHHHHH-HHhhcCHHHHHHhhC------CCCCc
Q 022242 132 MWKN-LSVEESQRLARENAKDIIACGFDVTK--TFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFG------FTGED 201 (300)
Q Consensus 132 ~~r~-l~~e~i~~~~~~~~~~iiA~G~dp~k--t~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~~~g------~~~~~ 201 (300)
..|+ ++.+++++|+.++ ...+++|+||++ +.||+|++|.++..|..+++ +++++|+++|.++.. ..+++
T Consensus 87 ~~r~~l~~e~i~~n~~~i-~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~~~~i 165 (408)
T PRK05912 87 ETRKLLTREQVAENAETI-KEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLREGQGI 165 (408)
T ss_pred hhhccCCHHHHHHHHHHH-HHHHHHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhccCCCC
Confidence 4455 7999999998654 667799999998 99999999998888888898 999999999987532 23589
Q ss_pred cccccchhhhhcCCCCCCCccccccCCCCcceee-ccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCcccc
Q 022242 202 HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 280 (300)
Q Consensus 202 ~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clv-p~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSk 280 (300)
|+|+|+||+|||||++ + +..+++|.+ |+|.||++|++++||+|+|+|..++..++.++||+++| +||||
T Consensus 166 s~~ef~Yp~LQa~D~l-----~---l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G--~KMsK 235 (408)
T PRK05912 166 SFTEFLYPLLQGYDFV-----A---LNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDG--KKMGK 235 (408)
T ss_pred chhhhhhHHHHHhhHH-----H---HhccCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCC--CcccC
Confidence 9999999999999853 2 323456765 57999999999999999999987777777888888886 89999
Q ss_pred CCCCCeeecCC---CHHHHhccC
Q 022242 281 SDPNSAIYVTD---SAKAIKNKV 300 (300)
Q Consensus 281 S~p~saI~L~D---~p~~i~~KI 300 (300)
|. +|+|||+| +|+++++||
T Consensus 236 S~-~naI~L~d~~tsp~~i~qki 257 (408)
T PRK05912 236 SE-GNAVWLDEEKTSPYEMYQKW 257 (408)
T ss_pred CC-CCceeCCCCCCCHHHHHHHH
Confidence 98 99999999 999999986
No 9
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=1.3e-49 Score=377.77 Aligned_cols=202 Identities=39% Similarity=0.558 Sum_probs=179.9
Q ss_pred CceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCC-CHHHHHHHHHHHHHHHHHcCCCCCce
Q 022242 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKT 162 (300)
Q Consensus 84 ~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l-~~e~i~~~~~~~~~~iiA~G~dp~kt 162 (300)
+|+++|+|++||| .|||||++++++.+++|++ |+.++|+|||+|+++.++. +.+.++.++++++++|+|||+||+|+
T Consensus 1 ~~~~v~~G~~PTG-~~HlG~~l~~~~~~~~~q~-~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 78 (328)
T TIGR00233 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQQF-GVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKT 78 (328)
T ss_pred CCCEEEEeeCCCc-HhHHHHHHHHHHHHHHHhC-CCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhhe
Confidence 4789999999999 9999999999999998875 8999999999999886643 77889999999999999999999999
Q ss_pred EEEeccccCCcccHHHHHHHHhhcCHHHHHHhhCCCCC-----ccccccchhhhhcCCCCCCCccccccCCCCcceeecc
Q 022242 163 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGE-----DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (300)
Q Consensus 163 ~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~~~-----~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~ 237 (300)
.||.||+|. .++..++.+++.+|++++.+..++.+. .++|+|+||+|||||+ +.+++ .+||+
T Consensus 79 ~if~qS~~~--e~~el~~~l~~~~t~~~l~r~~~~k~k~~~~~~~~g~l~YP~lqaaDi--------l~~~~---d~vpv 145 (328)
T TIGR00233 79 FIFLQSDYP--EHYELAWLLSCQVTFGELKRMTQFKDKSQAENVPIGLFSYPVLQAADI--------LLYQA---DLVPV 145 (328)
T ss_pred EEEEcCCcH--HHHHHHHHHHccCCHHHHHhccCcchhccCCCCCchhhcchHHHHhhh--------hhcCC---Ceeec
Confidence 999999996 588888899999999999998876544 4999999999999974 55665 58899
Q ss_pred ccCchhHHHHHHHHHHHhC------CCCCceeecccccCCCCCC-CccccCCCCCeeecCCCHHHHhccC
Q 022242 238 AIDQDPYFRMTRDVAPRIG------YHKPALIESSFFPALQGET-GKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 238 G~DQd~~~~l~rdla~r~~------~~kp~~i~~~~lp~L~g~g-~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
|.||+||++||||+|+|+| +++|..++++++|.|.|.. +|||||+|+|+|||+|+|++|++||
T Consensus 146 G~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D~~e~I~~KI 215 (328)
T TIGR00233 146 GIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKI 215 (328)
T ss_pred ccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecCCHHHHHHHH
Confidence 9999999999999999999 6889989887766666542 6999999889999999999999997
No 10
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.7e-49 Score=366.60 Aligned_cols=200 Identities=24% Similarity=0.296 Sum_probs=183.7
Q ss_pred EEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC---------CCHHHHHHHHHHHHHHHHHcCC
Q 022242 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGF 157 (300)
Q Consensus 87 ~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~---------l~~e~i~~~~~~~~~~iiA~G~ 157 (300)
++|+||+|||++|||||+++++.++|||++ |+.++|+|||+|+++.++ .+++++++|+++++++++|+|+
T Consensus 2 ~iy~G~~PTg~~lHLG~~~~~~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~ 80 (269)
T cd00805 2 KVYIGFDPTAPSLHLGHLVPLMKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILD 80 (269)
T ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 699999999989999999999999999997 899999999999988644 7999999999999999999999
Q ss_pred C--CCceEEEeccccCCcccHHHHHHHHhhcCHHHHHHhhCC------CCCccccccchhhhhcCCCCCCCccccccCCC
Q 022242 158 D--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 229 (300)
Q Consensus 158 d--p~kt~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~------~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~ 229 (300)
+ |+|+.||.|++|.++.+|.+++++++.+++++|+++.++ .+++++|+|+||+|||||+ +.+++
T Consensus 81 ~~~p~k~~i~~~s~~~~~l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaaDi--------~~l~~ 152 (269)
T cd00805 81 FIPPEKAKFVNNSDWLLSLYTLDFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAYDF--------VYLDV 152 (269)
T ss_pred cCCCcceEEEEchHhhccCCHHHHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhH--------HHHhC
Confidence 6 999999999999988899999999999999999987653 3578999999999999975 44554
Q ss_pred CcceeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCe-eecCCCHHHHhccC
Q 022242 230 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKV 300 (300)
Q Consensus 230 ~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~sa-I~L~D~p~~i~~KI 300 (300)
|++|+|.||+||++++||+|+|+++.+|..+++++||+|+| +|||||.+++. |++.|+|++|++||
T Consensus 153 ---~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki 219 (269)
T cd00805 153 ---DLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKI 219 (269)
T ss_pred ---CeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHH
Confidence 88999999999999999999999999999999999999998 69999996655 69999999999996
No 11
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1e-48 Score=363.32 Aligned_cols=202 Identities=21% Similarity=0.285 Sum_probs=176.8
Q ss_pred EEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC---------CCHHHHHHHHHHHHHHHHHcCC
Q 022242 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGF 157 (300)
Q Consensus 87 ~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~---------l~~e~i~~~~~~~~~~iiA~G~ 157 (300)
.+|+|++|||++|||||+++++.++|||++ |+.++++|||.|+++.++ ++.+++++|+.+++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~l~~~~~lq~~-g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIGLLTFRRFQHA-GHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHHHHHHHHHHHC-CCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 389999999988999999999999999996 777888899999876543 2899999999999999999999
Q ss_pred C--CCceEEEeccccCCc-ccHHHHHHHHhhcCHHHHHHhhCCC----CCccccccchhhhhcCCCCCCCccccccCCCC
Q 022242 158 D--VTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFT----GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (300)
Q Consensus 158 d--p~kt~I~~ns~~~~~-~~~~~~~~l~k~~t~~~~~~~~g~~----~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~ 230 (300)
| |+++.||+|++|.+. .++..+..+++++|+++|+++.++. +++++|+|+||+|||||++ .++++
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaaD~l--------~l~~~ 151 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAADFL--------LLNTT 151 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHHHHH--------HHhcc
Confidence 9 999999999999865 4555556699999999999987764 3899999999999999754 34555
Q ss_pred cce-eeccccCchhHHHHHHHHHHHhC-CCCCceeecccccCCCCCCCccccCCCCCeee---cCCCHHHHhccC
Q 022242 231 LRC-LIPCAIDQDPYFRMTRDVAPRIG-YHKPALIESSFFPALQGETGKMSASDPNSAIY---VTDSAKAIKNKV 300 (300)
Q Consensus 231 ~~c-lvp~G~DQd~~~~l~rdla~r~~-~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~---L~D~p~~i~~KI 300 (300)
.+| ++|+|.||+||++++||+|+|+| .++|..++.++||+|+| .|||||. +|+|| ++|+|++|++||
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G--~KMSKS~-~~~i~l~~~~dsp~~i~~ki 223 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDG--PKFGKSE-SGPKWLDTEKTSPYEFYQFW 223 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCC--CcCCCCC-CCCccccccCCCHHHHHHHH
Confidence 667 88999999999999999999997 57898899999999998 5999999 56666 489999999996
No 12
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.1e-48 Score=372.81 Aligned_cols=227 Identities=18% Similarity=0.256 Sum_probs=194.6
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhh-HHHHHHHHHHHhCCCeEEEEEeccccccccC--C
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhl-i~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~--l 136 (300)
.+++||...-. ..++|.+++++++++.+|+|++||| .|||||. +..+.+++||++ |+.++++|||+|+++.++ .
T Consensus 42 ~~i~r~~~e~i-~~eel~~~l~~~~~~~v~~G~~PTG-~lHLG~g~i~~~~~~~lq~~-G~~v~~~IaD~hA~~~~~~g~ 118 (383)
T PTZ00126 42 KLCLSIGEECI-QPEELRELLKLKERPICYDGFEPSG-RMHIAQGILKAINVNKLTKA-GCVFVFWVADWFALLNNKMGG 118 (383)
T ss_pred HHHhcCceeec-CHHHHHHHHhcCCCCEEEEEECCCC-cccccchHhHhHHHHHHHhC-CCeEEEEEccceeecCCCCCC
Confidence 35778865444 5677788888889999999999999 7999994 454566779997 788999999999988754 6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCC---cccHHHHHHHHhhcCHHHHHHh---hCCC--CCccccccch
Q 022242 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG---GAFYKNMVKVAKCVTYNKVVGI---FGFT--GEDHIGKVSF 208 (300)
Q Consensus 137 ~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~---~~~~~~~~~l~k~~t~~~~~~~---~g~~--~~~~~g~~~Y 208 (300)
++++++++++++++.|+|||+||+|+.||.||+|.. ..+|..++++++++|+++|++. +++. ++.++|+|+|
T Consensus 119 ~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~~~~~~~g~l~Y 198 (383)
T PTZ00126 119 DLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSEGDEQPCAQILY 198 (383)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhccccCCCCCchhhhh
Confidence 899999999999999999999999999999999753 2678999999999999999753 3443 3578999999
Q ss_pred hhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCC-CCCceeecccccCCCCCCCccccCCCCCee
Q 022242 209 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAI 287 (300)
Q Consensus 209 P~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~-~kp~~i~~~~lp~L~g~g~KMSkS~p~saI 287 (300)
|+|||||+ +.+++| ++|+|.||+||++||||+|+|+|+ ++|.++++++||||++.++|||||.|+++|
T Consensus 199 P~LQaaDi--------l~l~ad---ivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I 267 (383)
T PTZ00126 199 PCMQCADI--------FYLKAD---ICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAI 267 (383)
T ss_pred hHHHhhhh--------hccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCee
Confidence 99999975 456664 579999999999999999999995 588888999999997546899999998899
Q ss_pred ecCCCHHHHhccC
Q 022242 288 YVTDSAKAIKNKV 300 (300)
Q Consensus 288 ~L~D~p~~i~~KI 300 (300)
||+|+|++|++||
T Consensus 268 ~L~Dspe~I~kKI 280 (383)
T PTZ00126 268 FMEDSEEDVNRKI 280 (383)
T ss_pred cCCCCHHHHHHHH
Confidence 9999999999997
No 13
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=1.3e-47 Score=364.65 Aligned_cols=199 Identities=30% Similarity=0.407 Sum_probs=166.7
Q ss_pred eEEEEecCCCCCCcchhhhHHHHHHH-HHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMFTK-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~~~-~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (300)
.++|||++||| .|||||++++++.. +||++++ ++|+|||+|+++.+..+++++++++++++++|+|||+||+|++|
T Consensus 3 ~~v~sG~~PTG-~~HLGn~l~~~~~~~~lQ~~~~--~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i 79 (333)
T PRK12282 3 PIILTGDRPTG-KLHLGHYVGSLKNRVALQNEHE--QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTI 79 (333)
T ss_pred CEEEEeeCCCC-cchHHHHHHHHHHHHHHHhCCC--EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEE
Confidence 36999999998 79999999987665 8999865 58889999997765589999999999999999999999999999
Q ss_pred EeccccCCc----ccHHH---HHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeecc
Q 022242 165 FSDFDYVGG----AFYKN---MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (300)
Q Consensus 165 ~~ns~~~~~----~~~~~---~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~ 237 (300)
|.||+|.++ .+|.. +.++.|+.++++..+.+++.+++++|+++||+||||| |+.+++ |+|||
T Consensus 80 ~~qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaD--------Il~~~~---d~vpv 148 (333)
T PRK12282 80 FIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAAD--------ITAFKA---TLVPV 148 (333)
T ss_pred EECCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHH--------HHhhCC---CEEEe
Confidence 999999653 22333 3355566666665555666788999999999999996 455665 89999
Q ss_pred ccCchhHHHHHHHHHHHhCC--CCCcee-------ecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 238 AIDQDPYFRMTRDVAPRIGY--HKPALI-------ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 238 G~DQd~~~~l~rdla~r~~~--~kp~~i-------~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
|.||+||++||||+|+|+|. .+|..+ .+++||+|+| ++|||||+ +|+|||+|+|++|++||
T Consensus 149 G~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g-~~KMSKS~-~~~I~L~D~pe~I~kKI 218 (333)
T PRK12282 149 GDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDG-KAKMSKSL-GNAIYLSDDADTIKKKV 218 (333)
T ss_pred ccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCC-CCcCCCCC-CCeeeeeCCHHHHHHHH
Confidence 99999999999999999993 334322 3679999988 47999999 67999999999999997
No 14
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=4.9e-48 Score=361.33 Aligned_cols=205 Identities=34% Similarity=0.530 Sum_probs=176.5
Q ss_pred cCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC--CCHHHHHHHHHHHHHH--HHHcCC
Q 022242 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKD--IIACGF 157 (300)
Q Consensus 82 ~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~--l~~e~i~~~~~~~~~~--iiA~G~ 157 (300)
+++++++||||+|||. |||||+++++.++|||++ |+.++|+|||+|+++.++ .+++.++.++.++++. ++|+|+
T Consensus 2 ~~~~~~~y~G~~PTg~-lHlG~l~~~~~~~~lq~~-g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~ 79 (292)
T PF00579_consen 2 ENKPFRVYTGIDPTGD-LHLGHLVPIMKLIWLQKA-GFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGL 79 (292)
T ss_dssp THSSEEEEEEEESSSS--BHHHHHHHHHHHHHHHT-TSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEeECCCCc-ccchHHHHHHHHHHHHhc-CCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 4579999999999995 999999999999999995 999999999999988875 4799999999999998 999999
Q ss_pred CCCceEEEeccccCCcc-cHHHHHHHHhhcCHHHHHHh------hCCCCCccccccchhhhhcCCCCCCCccccccCCCC
Q 022242 158 DVTKTFIFSDFDYVGGA-FYKNMVKVAKCVTYNKVVGI------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (300)
Q Consensus 158 dp~kt~I~~ns~~~~~~-~~~~~~~l~k~~t~~~~~~~------~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~ 230 (300)
||+++.|+.||+|.++. ++..+..+++..+++++.++ ++.++++++|+|+||+||||| ++.+++
T Consensus 80 d~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD--------~~~l~~- 150 (292)
T PF00579_consen 80 DPEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAAD--------ILLLKA- 150 (292)
T ss_dssp HTTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHH--------HHHTTH-
T ss_pred CccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccc--------eeeecc-
Confidence 99999999999998764 34444457776666666655 344468999999999999996 455665
Q ss_pred cceeeccccCchhHHHHHHHHHHHhCCC----CCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 231 LRCLIPCAIDQDPYFRMTRDVAPRIGYH----KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 231 ~~clvp~G~DQd~~~~l~rdla~r~~~~----kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
.++|||.||++|++++||+|+|+|+. +|+.++++++|+|+|. +|||||.+|++|||+|++++|++||
T Consensus 151 --~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki 221 (292)
T PF00579_consen 151 --DLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKI 221 (292)
T ss_dssp --SEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHH
T ss_pred --ccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHH
Confidence 47899999999999999999999998 9999999999999983 4999999888999999999999986
No 15
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.4e-47 Score=363.15 Aligned_cols=196 Identities=27% Similarity=0.362 Sum_probs=164.7
Q ss_pred EEEEecCCCCCCcchhhhHHHHHHHH--HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 022242 87 YLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (300)
Q Consensus 87 ~vytG~~PTg~~lHlGhli~~~~~~~--lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (300)
.+|+|++||| .|||||+++++ .+| ||++ +.+++.|||+|+++++ .+++++++++++++++|+|||+||+|+.|
T Consensus 3 ~v~~G~~PTG-~lHLG~~~g~~-~~~~~lQ~~--~~~~~~IaD~ha~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 77 (333)
T PRK00927 3 RVLSGIQPTG-KLHLGNYLGAI-KNWVELQDE--YECFFCIADLHALTVP-QDPEELRENTRELAADYLACGIDPEKSTI 77 (333)
T ss_pred EEEEeeCCCc-cchHHhHHHHH-HHHHHHHhc--CCeEEEEecHHHHhCC-CCHHHHHHHHHHHHHHHHeEccChhheEE
Confidence 5999999999 69999999875 555 9996 5678889999998765 69999999999999999999999999999
Q ss_pred EeccccCCc--ccHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeecc
Q 022242 165 FSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (300)
Q Consensus 165 ~~ns~~~~~--~~~~-----~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~ 237 (300)
|.||+|.++ .+|. .+.++.|+.++++..+. +.+++++|+|+||+|||||+ +.+++ |+||+
T Consensus 78 f~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~--~~~~~~~g~~~YP~lQaaDi--------l~~~~---divpv 144 (333)
T PRK00927 78 FVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAK--QKENVSAGLFTYPVLMAADI--------LLYKA---DLVPV 144 (333)
T ss_pred EEeCCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhc--cCCCCCcHhhhcHHHHHHHH--------HhcCC---CEEee
Confidence 999999764 1222 23456666666554332 34688999999999999974 45555 89999
Q ss_pred ccCchhHHHHHHHHHHHhCC------CCCceeec---ccccCCCCCCCccccCCCC--CeeecCCCHHHHhccC
Q 022242 238 AIDQDPYFRMTRDVAPRIGY------HKPALIES---SFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKV 300 (300)
Q Consensus 238 G~DQd~~~~l~rdla~r~~~------~kp~~i~~---~~lp~L~g~g~KMSkS~p~--saI~L~D~p~~i~~KI 300 (300)
|.||+||++||||+|+|+|+ ++|..+++ ++||||+|+++|||||.|+ |+|||+|+|++|++||
T Consensus 145 G~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI 218 (333)
T PRK00927 145 GEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKI 218 (333)
T ss_pred ccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHH
Confidence 99999999999999999985 57776663 7899999977799999976 9999999999999997
No 16
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.6e-47 Score=359.98 Aligned_cols=199 Identities=18% Similarity=0.250 Sum_probs=166.8
Q ss_pred eEEEEecCCCCCCcchhhhHHHHHH-HHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMFT-KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~~-~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (300)
.++|+|++||| .||||||++++.. .++|+.+++.+++.|||+|++ +...+++++++++++++++|+|||+||+|++|
T Consensus 4 ~~v~sGiqPTG-~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHal-t~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~i 81 (332)
T PRK12556 4 KIMLTGIKPTG-YPHLGNYIGAIKPALQMAKNYEGKALYFIADYHAL-NAVHDPEQFRSYTREVAATWLSLGLDPEDVIF 81 (332)
T ss_pred CEEEEEECCCC-cchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhc-cCCCCHHHHHHHHHHHHHHHhheeecccceEE
Confidence 47999999998 8999999998753 468887788899999999995 43479999999999999999999999999999
Q ss_pred EeccccCCcc--cH-H----HHHHHHhhcCHHHHHHh-----hCCCCCccccccchhhhhcCCCCCCCccccccCCCCcc
Q 022242 165 FSDFDYVGGA--FY-K----NMVKVAKCVTYNKVVGI-----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR 232 (300)
Q Consensus 165 ~~ns~~~~~~--~~-~----~~~~l~k~~t~~~~~~~-----~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~ 232 (300)
|.||++.++. .| . .+.++.|+.++++.... .++.+++++|+++||+|||||+ +.+++
T Consensus 82 f~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADI--------l~~~~--- 150 (332)
T PRK12556 82 YRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADI--------LLFQA--- 150 (332)
T ss_pred EECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhh--------hhccC---
Confidence 9999987541 11 1 13356666666655432 2345678999999999999964 55665
Q ss_pred eeeccccCchhHHHHHHHHHHHhC------CCCCcee---ecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIG------YHKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~------~~kp~~i---~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
|+||||.||+||++||||+|+||| +++|..+ +++++|||+| +|||||. +|+|+|+|+|++|++||
T Consensus 151 d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~-~n~I~L~D~p~~I~kKI 224 (332)
T PRK12556 151 THVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDG--RKMSKSY-GNVIPLFAEQEKLRKLI 224 (332)
T ss_pred CEEEeccccHHHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCC--CCCCCCC-CCcccccCCHHHHHHHH
Confidence 899999999999999999999999 5678766 6899999998 6999999 68999999999999997
No 17
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=9.3e-46 Score=355.88 Aligned_cols=198 Identities=23% Similarity=0.340 Sum_probs=168.8
Q ss_pred eEEEEecCCCCCCcchhhhHHHHHHHH--HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~~~~--lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (300)
..+|+|++||| .||||||++.+ .+| ||+ ++.+++.|||+|+++.+ .+++++++++++++++|+|||+||+|+.
T Consensus 47 ~~v~sGiqPSG-~lHLGnylGai-~~~v~lQ~--~~~~~~~IADlHAlt~~-~~~~~lr~~~~~~~a~~lA~GlDP~ks~ 121 (389)
T PLN02886 47 KRVVSGVQPTG-SIHLGNYLGAI-KNWVALQE--TYDTFFCVVDLHAITLP-HDPRELGKATRSTAAIYLACGIDPSKAS 121 (389)
T ss_pred CeEEEEECCCC-ccHHHHHHHHH-HHHHHHhc--cCCEEEEEecHHHhhCC-CCHHHHHHHHHHHHHHHHHcCcCccceE
Confidence 36999999998 89999999875 444 998 45678899999998764 7999999999999999999999999999
Q ss_pred EEeccccCCc--ccHHH-----HHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeec
Q 022242 164 IFSDFDYVGG--AFYKN-----MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (300)
Q Consensus 164 I~~ns~~~~~--~~~~~-----~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp 236 (300)
||.||++.++ .+|.. +.++.|+++++++.+..+ .+++++|.|+||+||||| ||.+++ ++||
T Consensus 122 if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~-~~~~~~gll~YPvLqAAD--------ILl~~a---~~VP 189 (389)
T PLN02886 122 VFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAG-DENVGVGLLTYPVLMASD--------ILLYQA---DLVP 189 (389)
T ss_pred EEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcC-CCCCChHhhhChHHHHhh--------hhhcCC---CeEE
Confidence 9999998764 33332 348899999999887665 457899999999999996 566776 6899
Q ss_pred cccCchhHHHHHHHHHHHhCC------------------CCCceee---cccccCCCCCCCccccCCCC--CeeecCCCH
Q 022242 237 CAIDQDPYFRMTRDVAPRIGY------------------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSA 293 (300)
Q Consensus 237 ~G~DQd~~~~l~rdla~r~~~------------------~kp~~i~---~~~lp~L~g~g~KMSkS~p~--saI~L~D~p 293 (300)
||.||+||++||||+|+|||+ +.|..++ +.+||+|+|+.+|||||.|+ |+|+|+|+|
T Consensus 190 VG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~ 269 (389)
T PLN02886 190 VGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPP 269 (389)
T ss_pred EccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCH
Confidence 999999999999999999985 2555554 45899999876899999974 899999999
Q ss_pred HHHhccC
Q 022242 294 KAIKNKV 300 (300)
Q Consensus 294 ~~i~~KI 300 (300)
++|++||
T Consensus 270 e~I~kKI 276 (389)
T PLN02886 270 DVIANKI 276 (389)
T ss_pred HHHHHHH
Confidence 9999997
No 18
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=8.4e-45 Score=350.60 Aligned_cols=223 Identities=24% Similarity=0.281 Sum_probs=188.4
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC----
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---- 135 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~---- 135 (300)
.+.+||++..+++.+.+.+++++ ++++|+||+|||++|||||+++++++++||++ |+.++++|||.|+.+.++
T Consensus 7 ~l~~rg~~~~~t~~~~l~~ll~~--~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~-G~~~~iligd~ta~igdpsg~~ 83 (377)
T TIGR00234 7 LLKKRGLEVQVPEEEELLKLLER--KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQA-GHEVIVLLGDATALIGDPSGKS 83 (377)
T ss_pred HHHHCCCEEEcCCHHHHHHHhcC--CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEeccchhhcCCCChH
Confidence 67899999999998887776655 89999999999999999999999999999997 667788889999877643
Q ss_pred -----CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCCcccHHHH-HHHHhhcCHHHHHHhhCC----CCCccccc
Q 022242 136 -----LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNM-VKVAKCVTYNKVVGIFGF----TGEDHIGK 205 (300)
Q Consensus 136 -----l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~-~~l~k~~t~~~~~~~~g~----~~~~~~g~ 205 (300)
++.+++++|+ ++++.++|+|+||+++.|++|++|.....|.++ .++++++|+++|+++.++ .+++++++
T Consensus 84 ~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~~~is~~e 162 (377)
T TIGR00234 84 EERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISLSE 162 (377)
T ss_pred HHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHhcCCCchh
Confidence 5677888887 678899999999999999999999876545554 459999999999998764 24799999
Q ss_pred cchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCC
Q 022242 206 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 285 (300)
Q Consensus 206 ~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~s 285 (300)
|+||+|||||+ +.++++ ++++|.||++|++.+||+|+|++...+..+..+++++++| .|||||. +|
T Consensus 163 f~YpllQa~D~--------~~l~~d---i~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg--~KmgKS~-~~ 228 (377)
T TIGR00234 163 FIYPLLQAYDF--------VYLNVD---LQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADG--EKMGKSG-GG 228 (377)
T ss_pred hhhHHHHHHHH--------HHHcCC---eeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCC--CCccCCC-CC
Confidence 99999999974 445554 6799999999999999999999977777677788888875 8999997 56
Q ss_pred eeecCCC-----------HHHHhccC
Q 022242 286 AIYVTDS-----------AKAIKNKV 300 (300)
Q Consensus 286 aI~L~D~-----------p~~i~~KI 300 (300)
+||++++ |+++.+||
T Consensus 229 ~i~l~~~~~~~~i~~~d~~D~~~~Ki 254 (377)
T TIGR00234 229 AVSLDEGKYDFYQFWINTPDEDVKKI 254 (377)
T ss_pred cccCCccHhhhhhhhcCCcHHHHHHH
Confidence 6666666 99988875
No 19
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-44 Score=367.86 Aligned_cols=227 Identities=20% Similarity=0.260 Sum_probs=190.8
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhh-HHHHHHHHHHHhCCCeEEEEEeccccccccC--C
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhl-i~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~--l 136 (300)
.+++|+.-. +-..++|.+++++++++++|+|++||| .|||||+ +..+....++++ |+.++++|||+|++++.+ .
T Consensus 8 ~ll~r~~~E-vi~~eeL~~ll~~~~~~rv~sGi~PTG-~lHLGng~~~aik~~~~~q~-g~~~~~lIAD~HAlt~~~~~~ 84 (682)
T PTZ00348 8 KLLRSVGEE-CIQESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTQA-GCEFVFWVADWFALMNDKVGG 84 (682)
T ss_pred HHHhcCcee-ecCHHHHHHHHhcCCCCEEEEeeCCCC-cCeeccHHHHHHHHHHHHhC-CCeEEEEEcchhhhcCCCCCC
Confidence 356777543 335777888888888999999999999 7999994 455444335554 788999999999988643 5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC-Cc--ccHHHHHHHHhhcCHHHHHHh---hCCCC-Cccccccchh
Q 022242 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAKCVTYNKVVGI---FGFTG-EDHIGKVSFP 209 (300)
Q Consensus 137 ~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~-~~--~~~~~~~~l~k~~t~~~~~~~---~g~~~-~~~~g~~~YP 209 (300)
++++++.+++++++.|+|+|+||+|+.||.||+|. ++ .+|..++++++++|+++++++ +|+.+ ++++|+++||
T Consensus 85 ~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YP 164 (682)
T PTZ00348 85 ELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYP 164 (682)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhh
Confidence 89999988899999999999999999888899854 33 578889999999999999985 45544 5899999999
Q ss_pred hhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCC-CCCceeecccccCCCCCCCccccCCCCCeee
Q 022242 210 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIY 288 (300)
Q Consensus 210 ~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~-~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~ 288 (300)
+|||||+ +.+++ .+||||.||+||++||||+|+++|. ++|.+++++++|||+|.++|||||.|+|+||
T Consensus 165 vLQAADI--------l~l~a---divpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~ 233 (682)
T PTZ00348 165 LMQCADI--------FFLKA---DICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIF 233 (682)
T ss_pred HHHhhcc--------cccCC---CEEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeec
Confidence 9999975 45666 4679999999999999999999995 4788888999999997668999999999999
Q ss_pred cCCCHHHHhccC
Q 022242 289 VTDSAKAIKNKV 300 (300)
Q Consensus 289 L~D~p~~i~~KI 300 (300)
|+|+|++|++||
T Consensus 234 L~Dspe~I~kKI 245 (682)
T PTZ00348 234 MEDTEEDVARKI 245 (682)
T ss_pred ccCCHHHHHHHH
Confidence 999999999997
No 20
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.3e-43 Score=338.11 Aligned_cols=198 Identities=21% Similarity=0.285 Sum_probs=161.0
Q ss_pred EEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 022242 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 166 (300)
Q Consensus 87 ~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ 166 (300)
.+|+|++||| .||||||++++ .+|.+-..+..+++.|+|+|+++++..+++++++++++++++|+|||+||+|+.||.
T Consensus 4 ~v~sGiqPSG-~~HLGnylG~i-k~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~ 81 (398)
T PRK12283 4 RVLSGMRPTG-RLHLGHYHGVL-KNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFI 81 (398)
T ss_pred EEEEEeCCCC-cchHHHHHHHH-HHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 5999999998 89999999974 678442235678899999999877657999999999999999999999999999999
Q ss_pred ccccCCc--ccHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeecccc
Q 022242 167 DFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239 (300)
Q Consensus 167 ns~~~~~--~~~~-----~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~ 239 (300)
||+++++ .+|. .+.++.|++++++...+.+..++.++|.++||+||||| ||.+++ ++||||.
T Consensus 82 QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAAD--------ILl~~a---~iVPVG~ 150 (398)
T PRK12283 82 QSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSAD--------ILIYRA---GLVPVGE 150 (398)
T ss_pred CCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHH--------HHhcCC---CEeeecc
Confidence 9999754 2221 13356666666655443222457899999999999996 566665 8899999
Q ss_pred CchhHHHHHHHHHHHhCCC-------------------------------------------------------------
Q 022242 240 DQDPYFRMTRDVAPRIGYH------------------------------------------------------------- 258 (300)
Q Consensus 240 DQd~~~~l~rdla~r~~~~------------------------------------------------------------- 258 (300)
||+||++||||+|+|||..
T Consensus 151 DQ~qHleLaRdIA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (398)
T PRK12283 151 DQVPHVEMTREIARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRE 230 (398)
T ss_pred ccHHHHHHHHHHHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhc
Confidence 9999999999999997642
Q ss_pred ---------------CCce--eecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 259 ---------------KPAL--IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 259 ---------------kp~~--i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
.|.. .++++||+|+| +|||||. +|+|+|+|+|++|++||
T Consensus 231 ~~~~~~~~~~~~~~~~P~~~~~~~~~I~gLdg--~KMSKS~-~n~I~L~Ds~~~I~kKI 286 (398)
T PRK12283 231 RLFGYLEGAGKIILPEPQALLTEASKMPGLDG--QKMSKSY-GNTIGLREDPESVTKKI 286 (398)
T ss_pred cccccccccCCcccCCCcccccCCCcccCCCC--CcCCCCC-CCeeeCcCCHHHHHHHH
Confidence 2333 24689999987 7999997 78999999999999997
No 21
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.1e-43 Score=340.04 Aligned_cols=200 Identities=21% Similarity=0.204 Sum_probs=164.4
Q ss_pred ceEEEEecCCCCCCcchhhhHHHHH-HHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 022242 85 KFYLYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~~~~-~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (300)
...+|+|++||| .||||||++.+. ..++|+..++.+++.|+|+|+.+ +..+++++++++++++++|+|||+||+|+.
T Consensus 2 ~~rvlSGiqPTG-~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT-~~~dp~~lr~~~~e~aa~~LA~GlDPek~~ 79 (431)
T PRK12284 2 TTRVLTGITTTG-TPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALI-KCDDPARIQRSTLEIAATWLAAGLDPERVT 79 (431)
T ss_pred ceEEEEEecCCC-cchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhcc-CCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 357999999998 899999999864 22366544778899999999976 448999999999999999999999999999
Q ss_pred EEeccccCCc--ccHHH-----HHHHHhhcCHHHHHHhh---CCC--CCccccccchhhhhcCCCCCCCccccccCCCCc
Q 022242 164 IFSDFDYVGG--AFYKN-----MVKVAKCVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHL 231 (300)
Q Consensus 164 I~~ns~~~~~--~~~~~-----~~~l~k~~t~~~~~~~~---g~~--~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~ 231 (300)
||.||+++++ .+|.. +.++.|+.++++..... |++ +++++|.|+||+||||| |+.+++
T Consensus 80 if~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAAD--------ILly~a-- 149 (431)
T PRK12284 80 FYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAAD--------ILMFNA-- 149 (431)
T ss_pred EEECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhh--------hhhcCC--
Confidence 9999999865 23322 34677787777654332 332 45899999999999996 566776
Q ss_pred ceeeccccCchhHHHHHHHHHHHhCC-------CCCcee---ecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 232 RCLIPCAIDQDPYFRMTRDVAPRIGY-------HKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 232 ~clvp~G~DQd~~~~l~rdla~r~~~-------~kp~~i---~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
++||||.||.||++||||+|+|||+ +.|..+ ++++||||+| +|||||. +|+|+|+|+|++|++||
T Consensus 150 -d~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~-~n~I~L~Ds~~~I~kKI 224 (431)
T PRK12284 150 -HKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDG--RKMSKSY-DNTIPLFAPREELKKAI 224 (431)
T ss_pred -CEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCC--ccccCCC-CCEeeecCCHHHHHHHH
Confidence 7899999999999999999999984 235333 3689999997 7999999 79999999999999997
No 22
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-41 Score=323.41 Aligned_cols=217 Identities=24% Similarity=0.354 Sum_probs=179.9
Q ss_pred hhhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC-CC
Q 022242 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LS 137 (300)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~-l~ 137 (300)
..|+.||++....+++.+.+.++.+ ++.+|+||||||+++||||+++++++++||++ |+.++++|||.|+++.++ ..
T Consensus 7 ~~L~~Rg~~~~i~~ee~l~~ll~~~-~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~a-Gh~~ivLigd~ta~IgDpsGk 84 (401)
T COG0162 7 LELIKRGLIEQITDEEELRKLLEEG-PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDA-GHKPIVLIGDATAMIGDPSGK 84 (401)
T ss_pred HHHHHcCchhccCcHHHHHHHHhcC-CceEEEeeCCCCCccchhhHHHHHHHHHHHHC-CCeEEEEecccceecCCCCCC
Confidence 3678999999999999988888876 99999999999999999999999999999998 677788888888888776 67
Q ss_pred HHHHHHHHH----HHHHHHH-HcCCCCC-ceEEEeccccCCcccHHHHHH-HHhhcCHHHHHHhhCC------CCCcccc
Q 022242 138 VEESQRLAR----ENAKDII-ACGFDVT-KTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF------TGEDHIG 204 (300)
Q Consensus 138 ~e~i~~~~~----~~~~~ii-A~G~dp~-kt~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~~~g~------~~~~~~g 204 (300)
.++.+..+. +|++.|. ++|-.++ ++.+.+|++|....-|..+++ +|+++|+++|+++..+ ++++++.
T Consensus 85 ~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~~ 164 (401)
T COG0162 85 SEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISFT 164 (401)
T ss_pred HHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCchh
Confidence 777776665 4555554 4576666 999999999998766666665 9999999999998643 3479999
Q ss_pred ccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHH--HHHHHHhCCCCCceeecccccCCCCCCCccccCC
Q 022242 205 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT--RDVAPRIGYHKPALIESSFFPALQGETGKMSASD 282 (300)
Q Consensus 205 ~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~--rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~ 282 (300)
||.||+|||||+ +.++.| +++|+. |||+|++ ||+++|+|++++.+++.|+|++++| +|||||.
T Consensus 165 Ef~YpLmQayD~--------~~L~~d----lq~GG~-DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG--~KmgKs~ 229 (401)
T COG0162 165 EFNYPLLQAYDF--------VYLNKD----LQLGGS-DQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDG--KKMGKSE 229 (401)
T ss_pred hhhhHHHHHHHH--------HHHccc----hhcCCh-HHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCC--CcccccC
Confidence 999999999974 445655 466665 6666655 9999999999999999999999998 5999998
Q ss_pred CCCeeecCCCH
Q 022242 283 PNSAIYVTDSA 293 (300)
Q Consensus 283 p~saI~L~D~p 293 (300)
++++|++.++
T Consensus 230 -~~a~~~~s~~ 239 (401)
T COG0162 230 -GGAVWLDSEK 239 (401)
T ss_pred -CCceEccCCC
Confidence 7788887654
No 23
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-39 Score=292.90 Aligned_cols=201 Identities=24% Similarity=0.373 Sum_probs=169.1
Q ss_pred ceEEEEecCCCCCCcchhhhHHHHHHHH--HHHhCC--CeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 022242 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFK--VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 160 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~~~~~~~--lQ~~~~--~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~ 160 (300)
+-++++|++||| ++|||||++. .-.| ||+..+ ..+.+.|+|.|+. +-+.+..+++++..++++.++|||+||+
T Consensus 13 ~~rvfSGIQPTG-~~HLGNYLGa-i~~Wv~LQ~~~d~~~~~~f~vvDlHaI-Tvp~dp~~lrq~~~dm~A~lLAcGIdp~ 89 (347)
T KOG2713|consen 13 PKRVFSGIQPTG-IPHLGNYLGA-IKPWVQLQNEYDKNILVLFSVVDLHAI-TVPQDPAELRQATHDMAASLLACGIDPE 89 (347)
T ss_pred cceeEeccCCCC-Cchhhhhhhh-hhHHHHHHHHhcCCceEEEEEeeceee-cCCCChHHHHHHHHHHHHHHHHhccCcc
Confidence 567999999998 9999999999 4667 998754 3466679999994 4445666999999999999999999999
Q ss_pred ceEEEeccccCCc---ccHHH----HHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcce
Q 022242 161 KTFIFSDFDYVGG---AFYKN----MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 233 (300)
Q Consensus 161 kt~I~~ns~~~~~---~~~~~----~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~c 233 (300)
|+.+|.||+++.+ .|+.. +.+++++..+++...+++ ....++|.|+||+||||| |+.+++ +
T Consensus 90 Ks~lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~-~~~~~vGLftYPvLqAAD--------ILLYks---T 157 (347)
T KOG2713|consen 90 KSSLFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFK-VGDVPVGLFTYPVLQAAD--------ILLYKS---T 157 (347)
T ss_pred cceeeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhc-cCccceeeecchhHhhhh--------Hhhhcc---c
Confidence 9999999999875 34332 558888888888877554 346899999999999995 677777 7
Q ss_pred eeccccCchhHHHHHHHHHHHhCC-------CCCceee---cccccCCCCCCCccccCCCC--CeeecCCCHHHHhccC
Q 022242 234 LIPCAIDQDPYFRMTRDVAPRIGY-------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKV 300 (300)
Q Consensus 234 lvp~G~DQd~~~~l~rdla~r~~~-------~kp~~i~---~~~lp~L~g~g~KMSkS~p~--saI~L~D~p~~i~~KI 300 (300)
.||||.||-||++|+|++|+++|. +.|..+. +..+.+|..|.+|||||+|| +.|.|+|+|++|.+||
T Consensus 158 hVPVGeDQsQHleL~r~lA~~fN~~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki 236 (347)
T KOG2713|consen 158 HVPVGEDQSQHLELARHLAQAFNKTYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKI 236 (347)
T ss_pred cccCCccHHHHHHHHHHHHHHHhhhccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHH
Confidence 899999999999999999999986 4454443 67899999989999999974 7999999999999997
No 24
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-35 Score=275.94 Aligned_cols=222 Identities=19% Similarity=0.290 Sum_probs=170.2
Q ss_pred hhhhhcCcccccCCHH---HHHHHHh-cCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEE------Eecc
Q 022242 59 HVFLRRGVFFAHRDLN---DILDAYE-KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQ------LTDD 128 (300)
Q Consensus 59 ~~l~~Rgi~~~~~d~~---~il~~~~-~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~------I~D~ 128 (300)
-.+..||++ ++.-.+ ...+.++ +|-|.+||+|||||++|||+||++++|-+.|+|.+++.++.++ ||||
T Consensus 34 ~~l~aR~l~-~~s~Pet~~~~~~~L~~rglp~~vYcGfDPTA~SLHvGNLl~lm~L~hfqr~Gh~~ialIGgATa~vGDP 112 (467)
T KOG2623|consen 34 TELKARGLF-QTSFPETLSKCSEDLNGRGLPQYVYCGFDPTAESLHVGNLLALMVLIHFQRAGHRPIALIGGATASVGDP 112 (467)
T ss_pred HHHHhcccc-cccCCCccchhhhhhhcCCCCceEEecCCCcHHhhhhcchHHHHHHHHHHHcCCCceEEeccccccccCC
Confidence 367889998 333222 2334443 5558999999999999999999999999999999988777774 9999
Q ss_pred cc-ccccC-CCHHHHHHHHHHHHHHH---H-------HcCCCCCceEEEeccccCCcccHHHHHH-HHhhcCHHHHHHhh
Q 022242 129 EK-CMWKN-LSVEESQRLARENAKDI---I-------ACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIF 195 (300)
Q Consensus 129 ~~-~~~r~-l~~e~i~~~~~~~~~~i---i-------A~G~dp~kt~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~~~ 195 (300)
+. -..|+ +.-+.+++|++..-..+ . .+|..-.+-.|++|++|.++.-+.+++. +|+++.+..|+++.
T Consensus 113 SGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~ 192 (467)
T KOG2623|consen 113 SGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARD 192 (467)
T ss_pred CCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHH
Confidence 95 34566 77777888775433333 2 2344445678999999998777777774 88888888887763
Q ss_pred ------CCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHH--HHHHHHhCCCCCceeeccc
Q 022242 196 ------GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT--RDVAPRIGYHKPALIESSF 267 (300)
Q Consensus 196 ------g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~--rdla~r~~~~kp~~i~~~~ 267 (300)
...+++|+.||+|++|||||+. |++ ++++|.+|+|+. |||+||+ .|+++|+-..+ +.+++.+
T Consensus 193 SV~~RLes~~GlSftEFtYQ~lQAYDfy-----~L~---~~~g~~~QlGGs-DQwGNitaG~dlI~ki~~~~-~~vfGlT 262 (467)
T KOG2623|consen 193 SVKSRLESPNGLSFTEFTYQLLQAYDFY-----HLY---ENYGCRFQLGGS-DQWGNITAGTDLIRKIMPIQ-AFVFGLT 262 (467)
T ss_pred HHHHhhcCCCCCcHHHHHHHHHHHHhHH-----HHH---HhcCeeEEeccc-ccccccchHHHHHHHhcccc-cceeeee
Confidence 4567999999999999999853 554 367899999998 9999998 89999985422 4567777
Q ss_pred ccCCCCC-CCccccCCCCCeeecCCC
Q 022242 268 FPALQGE-TGKMSASDPNSAIYVTDS 292 (300)
Q Consensus 268 lp~L~g~-g~KMSkS~p~saI~L~D~ 292 (300)
+|.|+.. |.|++||+ +|||||+.+
T Consensus 263 ~PLlTsstG~KlGKSa-GnAvWLdp~ 287 (467)
T KOG2623|consen 263 FPLLTSSTGAKLGKSA-GNAVWLDPS 287 (467)
T ss_pred eeeEecCcchhhccCC-CceEEecCc
Confidence 7777653 79999999 889999875
No 25
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-34 Score=261.66 Aligned_cols=224 Identities=20% Similarity=0.257 Sum_probs=180.3
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC-CCH
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSV 138 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~-l~~ 138 (300)
.|++|.+= .+-..++|.+.+++ +.+.+|+|+.||| ++|+|.++|++.++.|-+| ||.|.|++||+|+|+++. ..+
T Consensus 11 ~lItrnlq-E~lgee~lk~iL~e-r~l~~YwGtaptG-rpHiay~vpm~kiadflkA-GC~VtIl~AD~hA~LdNmkap~ 86 (360)
T KOG2144|consen 11 KLITRNLQ-EVLGEEELKNILAE-RALKCYWGTAPTG-RPHIAYFVPMMKIADFLKA-GCEVTILFADLHAFLDNMKAPD 86 (360)
T ss_pred HHHHHHHH-HHhCHHHHHHHHhc-cCceeeecCCCCC-CcceeeeeehhHHHHHHhc-CCeEEEEehHHHHHHhcccchH
Confidence 34444432 22234555566666 7789999999998 9999999999999999998 999999999999999977 888
Q ss_pred HHHHHHHHHHHHHHHH----cCCCCCceEEE--eccccCCcccHHHHHHHHhhcCHHHHHHh--hCCC--CCccccccch
Q 022242 139 EESQRLARENAKDIIA----CGFDVTKTFIF--SDFDYVGGAFYKNMVKVAKCVTYNKVVGI--FGFT--GEDHIGKVSF 208 (300)
Q Consensus 139 e~i~~~~~~~~~~iiA----~G~dp~kt~I~--~ns~~~~~~~~~~~~~l~k~~t~~~~~~~--~g~~--~~~~~g~~~Y 208 (300)
+.+..++.++-..|.+ .+.+.++..+. +|++. +..|-.++.++++.+|-..++.. .+.+ +..+++.+.|
T Consensus 87 e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~-sk~ytld~~rl~~~~~~hdak~agaevvkqve~plls~llY 165 (360)
T KOG2144|consen 87 ELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQL-SKYYTLDMYRLSSNVTQHDAKKAGAEVVKQVENPLLSGLLY 165 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhccccccc-CccchhhHHHHHhhccHhHHHHhhhhHHHhhcchhhhhhhh
Confidence 9988888777666544 34445565333 45543 34566778889988888877664 2332 4678899999
Q ss_pred hhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeee
Q 022242 209 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 288 (300)
Q Consensus 209 P~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~ 288 (300)
|.|||+|. +.++.|.. ++|.||+..+.++|++.+-+|++||.+++++++|||++ |+|||||+|+|+|+
T Consensus 166 P~MQalDe--------~~L~vD~q---fgGvDQRKIf~~A~eylp~l~ykKrihLmnpMvPGL~q-~~KMSsSd~~SkId 233 (360)
T KOG2144|consen 166 PGMQALDE--------FYLEVDAQ---FGGVDQRKIFVLAEEYLPDLGYKKRIHLMNPMVPGLAQ-GEKMSSSDPLSKID 233 (360)
T ss_pred hhHHHhhH--------HHHhhhHH---hcCccHHHHHHHHHHhhhhhCcccceeecCCCCccccc-cCccccCCcccccc
Confidence 99999974 44566653 89999999999999999999999999999999999997 79999999999999
Q ss_pred cCCCHHHHhccC
Q 022242 289 VTDSAKAIKNKV 300 (300)
Q Consensus 289 L~D~p~~i~~KI 300 (300)
|.|+|++|.+||
T Consensus 234 llD~~~~V~kKI 245 (360)
T KOG2144|consen 234 LLDEPADVNKKI 245 (360)
T ss_pred cccCHHHHHHHH
Confidence 999999999997
No 26
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.93 E-value=5.9e-26 Score=231.89 Aligned_cols=174 Identities=12% Similarity=0.127 Sum_probs=150.9
Q ss_pred HHHHhCCCeEEEEEeccccccccC--CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccc-CCc--ccHHHHHHHHhhc
Q 022242 112 YLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG--AFYKNMVKVAKCV 186 (300)
Q Consensus 112 ~lQ~~~~~~v~I~I~D~~~~~~r~--l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~-~~~--~~~~~~~~l~k~~ 186 (300)
.|+.+.||.++|+||||||+++++ .++++|++.++++++.|.|+|+|++ +.+...|+. .++ .||..++++++++
T Consensus 401 ~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~ 479 (682)
T PTZ00348 401 FIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKN 479 (682)
T ss_pred HHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhc
Confidence 477777999999999999999987 8999999999999999999999998 855444454 332 8999999999999
Q ss_pred CHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCCCCceeecc
Q 022242 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 266 (300)
Q Consensus 187 t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~ 266 (300)
|+++++++.| .+..+++++.||+||++| ++.++.|+ .++|.||+..++|+||++++... |...++.
T Consensus 480 tl~r~~r~~g-~~~~~~s~~iYP~MQ~~D--------i~~L~~di---~~gG~DQRki~mlAre~~~~~~~--~~~~~~~ 545 (682)
T PTZ00348 480 LLSHVEELYG-GELRNAGQVIAALMRVAT--------ALMLSASH---VISTSLDGGINEFAREYTKGRIE--CIQALEG 545 (682)
T ss_pred cHHHHHHHhc-CCcccHHHHHHHHHHHHH--------HHhcCCCe---eecChhHHHHHHHHHHhcccccc--chhhcCC
Confidence 9999999987 566799999999999996 56677765 38999999999999999997543 4446788
Q ss_pred cccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 267 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 267 ~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
++|+|.++..+|++|.++|+|||+|++++|++||
T Consensus 546 ~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki 579 (682)
T PTZ00348 546 RVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKI 579 (682)
T ss_pred CCccccccccccCCCCCCCeeeecCCHHHHHHHH
Confidence 8999987778899988899999999999999997
No 27
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.39 E-value=1.9e-12 Score=108.85 Aligned_cols=65 Identities=17% Similarity=0.042 Sum_probs=52.9
Q ss_pred hhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCC-CCceeecccccCCCCCCCccccCC
Q 022242 208 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASD 282 (300)
Q Consensus 208 YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~-kp~~i~~~~lp~L~g~g~KMSkS~ 282 (300)
|++.|+||++ ....+..+++++|.||.+|++..++++++++.+ +|..++..++++..| +|||||.
T Consensus 78 y~~~~~a~~~--------~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFL--------LLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKSK 143 (143)
T ss_pred HHHHHHHHHH--------HHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCCC
Confidence 9999999753 223334577799999999999999999999764 688888888888765 8999984
No 28
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.25 E-value=6.2e-11 Score=108.38 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=107.1
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 022242 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~-------I 164 (300)
.||| .|||||+..++ .+| +.+..|..+++.|-|... . -+. ..+...+.+++..+|+++++.. +
T Consensus 9 sPtG-~LHlG~~~~al-~n~l~ar~~~G~~ilRieDtd~--~--r~~---~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~ 79 (239)
T cd00808 9 SPTG-FLHIGGARTAL-FNYLFARKHGGKFILRIEDTDQ--E--RSV---PEAEEAILEALKWLGLDWDEGPDVGGPYGP 79 (239)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCeEEEEECcCCC--C--CCc---hHHHHHHHHHHHHcCCCCCcCCccCCCCCC
Confidence 5898 89999999995 555 334445567777777421 1 122 2334457777888999998732 7
Q ss_pred EeccccCCcccHHHHH-HHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchh
Q 022242 165 FSDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 243 (300)
Q Consensus 165 ~~ns~~~~~~~~~~~~-~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~ 243 (300)
|.||+- ...|..++ ++- + .| -|..+|++.+++| |.+ .+. +.|+.|.|+..
T Consensus 80 ~~QS~r--~~~y~~~~~~L~---------~-~g------dg~ptY~~a~~vD-------D~~-~~i---thViRG~D~~~ 130 (239)
T cd00808 80 YRQSER--LEIYRKYAEKLL---------E-KG------DGFPTYHLANVVD-------DHL-MGI---THVIRGEEHLS 130 (239)
T ss_pred EeeeCC--HHHHHHHHHHHH---------H-cC------CCCcccccHHHHh-------HHh-cCC---CEEEEChhhhh
Confidence 778864 23444432 221 1 11 2788999999998 544 333 67899999999
Q ss_pred HHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCC
Q 022242 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 284 (300)
Q Consensus 244 ~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~ 284 (300)
+....+.+++.+|.+.|...+.+++...+| .||||+..+
T Consensus 131 ~t~~q~~l~~aLg~~~p~~~h~pll~~~~g--~KLSKR~~~ 169 (239)
T cd00808 131 STPKQILLYEALGWEPPKFAHLPLILNPDG--KKLSKRKGD 169 (239)
T ss_pred ChHHHHHHHHHcCCCCCceEeeccccCCCC--CcccCCCCC
Confidence 999999999999999997777777776665 899999844
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.89 E-value=2.3e-08 Score=91.05 Aligned_cols=153 Identities=15% Similarity=0.243 Sum_probs=103.2
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
.||| .|||||+..++ ..| +-+..|-.+++-|=|.-. .| +. ......+.+++..+|++.+.- ++.||+..
T Consensus 9 sPtG-~lHlG~~r~al-~n~l~Ar~~~G~~iLRieDtD~--~R--~~---~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~ 78 (230)
T cd00418 9 SPTG-YLHIGHARTAL-FNFAFARKYGGKFILRIEDTDP--ER--SR---PEYVESILEDLKWLGLDWDEG-PYRQSDRF 78 (230)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCeEEEEeCcCCC--CC--CC---hHHHHHHHHHHHHcCCCCCCC-eeehhcCH
Confidence 5898 89999999985 555 555567777777766532 12 11 233345777888899988763 56677753
Q ss_pred CcccHHHHH-HHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHH
Q 022242 172 GGAFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 250 (300)
Q Consensus 172 ~~~~~~~~~-~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rd 250 (300)
..|..++ ++- + .| |..+|-+--+.| |.+. .+ +.|..|.|+...-..-+.
T Consensus 79 --~~y~~~~~~L~---------~-~g-------g~p~Y~la~vvD-------D~~~---gI-ThViRG~D~l~st~~q~~ 128 (230)
T cd00418 79 --DLYRAYAEELI---------K-KG-------GYPLYNFVHPVD-------DALM---GI-THVLRGEDHLDNTPIQDW 128 (230)
T ss_pred --HHHHHHHHHHH---------H-cC-------CCcccccccccc-------cccc---CC-CEEEECHhhhhchHHHHH
Confidence 3333322 221 1 11 555665555555 5542 23 678999998888778899
Q ss_pred HHHHhCCCCCceeecccccCCCCCCCccccCCCCCee
Q 022242 251 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 287 (300)
Q Consensus 251 la~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI 287 (300)
+++.+|.++|...|.+++...+| +||||+..+.+|
T Consensus 129 l~~~Lg~~~P~~~H~pll~~~~g--~KLSKr~~~~~i 163 (230)
T cd00418 129 LYEALGWEPPRFYHFPRLLLEDG--TKLSKRKLNTTL 163 (230)
T ss_pred HHHHcCCCCCeEEEeeeeeCCCC--CCccCcCCCcCH
Confidence 99999999998888888887775 899999844333
No 30
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.88 E-value=3.2e-08 Score=99.77 Aligned_cols=55 Identities=20% Similarity=0.322 Sum_probs=46.0
Q ss_pred eeccccCchh-HHHHHHHHHH-HhCCCCCceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDP-YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~-~~~l~rdla~-r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
..|.|.||.. ....++.+++ .+|.+.|..++..++..-+ |+|||||. +|.|.+.|
T Consensus 237 ~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~--G~KMSKSk-GN~i~~~d 293 (510)
T PRK00750 237 FEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKK--GEKISKSK-GNVITIED 293 (510)
T ss_pred EEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCC--CCcccccC-CCccCHHH
Confidence 4589999999 9999999999 8999888877777666554 48999998 88888765
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.77 E-value=1.5e-07 Score=90.84 Aligned_cols=199 Identities=19% Similarity=0.298 Sum_probs=106.9
Q ss_pred CCceEEEEecCCCCCCcchhhhHHHH---HHHHHHHhCCCeE-EEEEecccccccc-------------CCC--------
Q 022242 83 GEKFYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPL-VIQLTDDEKCMWK-------------NLS-------- 137 (300)
Q Consensus 83 ~~~~~vytG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v-~I~I~D~~~~~~r-------------~l~-------- 137 (300)
+.++.+=||+-||| .+||||+...+ ++..+++..|.++ +|..+|++.-+.+ ..+
T Consensus 18 ~~~~~v~tgi~psG-~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~ 96 (353)
T cd00674 18 KEKYVVASGISPSG-HIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPF 96 (353)
T ss_pred CCeEEEecCCCCCC-CcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhc
Confidence 45688899999998 89999977543 3444444345544 4567888832222 011
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCCcccHHH-HHH-HHhhcCHHHHHHhh-CC--CC--------Cc
Q 022242 138 ---VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN-MVK-VAKCVTYNKVVGIF-GF--TG--------ED 201 (300)
Q Consensus 138 ---~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~-~~~-l~k~~t~~~~~~~~-g~--~~--------~~ 201 (300)
.+-+.++.....+.+-.+|++.+ ++++++...+-.|.. +.. |.+.=.+.+++..+ |. .+ ..
T Consensus 97 g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~ 173 (353)
T cd00674 97 GCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCE 173 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecC
Confidence 12233444445555667899764 555555544333333 222 44444444444332 11 00 11
Q ss_pred ccc--------------ccchhhhhc----CCC--------CCCCcc-ccccCCCCcceeeccccCchhH---HHHHHHH
Q 022242 202 HIG--------------KVSFPPVQA----VPS--------FPSSFP-HLFSGKDHLRCLIPCAIDQDPY---FRMTRDV 251 (300)
Q Consensus 202 ~~g--------------~~~YP~lQa----ad~--------~~~~f~-~i~~~~~~~~clvp~G~DQd~~---~~l~rdl 251 (300)
+.| .+.|-+==+ +|. |.-.+| ....++.+ .-|.|.||..+ +...+.+
T Consensus 174 ~cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd---~E~~GkDh~~~ggs~~~~~~i 250 (353)
T cd00674 174 KCGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVD---FEPFGKDHASAGGSYDTGKEI 250 (353)
T ss_pred CcCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCC---EEeeCccccccccHHHHHHHH
Confidence 222 223321000 000 000000 00112222 23899999888 9999999
Q ss_pred HH-HhCCCCCceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 252 AP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 252 a~-r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
++ .+|++.|..+..-++- +.| ++|||||. +|.|.+.|
T Consensus 251 ~~~ilg~~~P~~~~ye~V~-l~g-g~KMSKSk-GnvI~~~d 288 (353)
T cd00674 251 AREIFGGEPPVPVMYEFIG-LKG-GGKMSSSK-GNVITPSD 288 (353)
T ss_pred HHHHhCCCCCeEEEeeeEE-eCC-CCccCCCC-CCcCCHHH
Confidence 99 8998888665555543 544 36999998 88888765
No 32
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.42 E-value=3.6e-06 Score=85.01 Aligned_cols=197 Identities=17% Similarity=0.269 Sum_probs=104.2
Q ss_pred CceEEEEecCCCCCCcchhhhHHHH----HHHHHHHhCCCeEEEEEeccccccccC---CCHHH----------------
Q 022242 84 EKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEKCMWKN---LSVEE---------------- 140 (300)
Q Consensus 84 ~~~~vytG~~PTg~~lHlGhli~~~----~~~~lQ~~~~~~v~I~I~D~~~~~~r~---l~~e~---------------- 140 (300)
+++.+=||+.||| .+||||+.-++ +.+.+...+.-..+|..+|++.-+.+- ++ +.
T Consensus 18 ~~~~~~tg~~psG-~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p-~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 18 NLYTVASGITPSG-HIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP-EELETYLGMPLTRIPDPE 95 (515)
T ss_pred CeEEEecCCCCCC-CccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc-HHHHHhCCCcceecCCCC
Confidence 4789999999998 89999987543 233455554344456678887222210 11 11
Q ss_pred --HHHHHH----HHHHHHHHcCCCCCceEEEeccccCCcccHHHHHH--HHhhcCHHHHHHhh-CC--CC--------Cc
Q 022242 141 --SQRLAR----ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF-GF--TG--------ED 201 (300)
Q Consensus 141 --i~~~~~----~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~~--l~k~~t~~~~~~~~-g~--~~--------~~ 201 (300)
...++. ...+.+-.+|++ ..++++++....-.|...++ +.+.-.+.+++..+ |. .+ ..
T Consensus 96 g~~~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~ 172 (515)
T TIGR00467 96 GCKTSYAEHFLIPFLESLPVLGIN---PEFIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTSKLEENWYPISVFCE 172 (515)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCe---EEEEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCCccCCCceeeeeecC
Confidence 133333 333344557885 46778887765545554443 44444444444332 21 11 23
Q ss_pred cccccchhhhhcCCCCC-CCcc---------cccc-----------------CCCCcceeeccccCchhHH---HHHHHH
Q 022242 202 HIGKVSFPPVQAVPSFP-SSFP---------HLFS-----------------GKDHLRCLIPCAIDQDPYF---RMTRDV 251 (300)
Q Consensus 202 ~~g~~~YP~lQaad~~~-~~f~---------~i~~-----------------~~~~~~clvp~G~DQd~~~---~l~rdl 251 (300)
+.|.+..|+. .+|.=. =.|- ++.. ++.+ .-|.|.|+..-+ ....++
T Consensus 173 ~cGrv~~~~~-~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~WkvdW~~RW~~lgV~---~Ep~GkDH~~~ggsy~~~~~i 248 (515)
T TIGR00467 173 NCGRDTTTVN-NYDNEYSIEYSCECGNQESVDIYTGAIKLPWRVDWPARWKIEKVT---FEPAGKDHAAAGGSYDTGVNI 248 (515)
T ss_pred CcCccCceEE-EecCCceEEEEcCCCCEEEEeecCCCcccCCCCCcHhhHhhhCcc---cccCCCCccCccCCchhHHHH
Confidence 5566666655 443100 0000 0111 1111 126778765433 444666
Q ss_pred HH-HhCCCCCceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 252 AP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 252 a~-r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
|+ -+|...|..+..-++- |.|.|+|||||. +|.|.+.|
T Consensus 249 a~~~l~~~~P~~~~ye~v~-L~~~g~KMSKS~-Gn~itl~d 287 (515)
T TIGR00467 249 AKEIFQYSPPVTVQYEWIS-LKGKGGKMSSSK-GDVISVKD 287 (515)
T ss_pred HHHHhCCCCCcCcEEEEEE-EcCCCccccCCC-CCCccHHH
Confidence 65 4766666433222222 556678999999 88887754
No 33
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.91 E-value=0.00011 Score=67.45 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=97.6
Q ss_pred EEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecc
Q 022242 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 168 (300)
Q Consensus 89 ytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns 168 (300)
=+|-.||| .|||||+..+++.--+.+.++..+++-|.|...- |.-..++.. ..+.+++..+|++++. ++.||
T Consensus 5 RfaPsPtG-~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~--r~~~~~~~~---~~i~~dL~wLGl~~d~--~~~qS 76 (240)
T cd09287 5 RFAPNPNG-PLHLGHARAAILNGEYAKMYGGKFILRFDDTDPR--TKRPDPEAY---DMIPEDLEWLGVKWDE--VVIAS 76 (240)
T ss_pred eCCCCCCC-CccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCC--cccchHHHH---HHHHHHHHHcCCCCCC--ccchh
Confidence 35677998 8999999998544336666788888888887531 100222222 3477788889998874 57777
Q ss_pred ccCCcccHHHHH-HH-HhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHH
Q 022242 169 DYVGGAFYKNMV-KV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 246 (300)
Q Consensus 169 ~~~~~~~~~~~~-~l-~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~ 246 (300)
+.. ..|..++ ++ .+-..+. .... .+.- ..||..|=|-.+- |.+. .+ +.|..|.|-...-.
T Consensus 77 ~r~--~~y~~~~~~Li~~G~aY~--~~~~---~~~~---~i~ptY~la~vVD----D~~~---gI-ThViRg~d~~~~t~ 138 (240)
T cd09287 77 DRI--ELYYEYARKLIEMGGAYV--HPRT---GSKY---RVWPTLNFAVAVD----DHLL---GV-THVLRGKDHIDNTE 138 (240)
T ss_pred ccH--HHHHHHHHHHHHcCCccc--Cccc---CCcE---EEEEccccceeee----cccc---CC-CeEEechhhhhCCH
Confidence 753 2333322 22 2111111 0111 1111 2245555442221 3321 23 56788998655555
Q ss_pred HHHHHHHHhCCCCCceeecccccCCCCCCCccccCC
Q 022242 247 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 282 (300)
Q Consensus 247 l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~ 282 (300)
.-+-+.+.+|.+.|...|.+++. +.|+||||.+
T Consensus 139 ~q~~l~~~Lg~~~P~~~H~pll~---~~~~kLSKR~ 171 (240)
T cd09287 139 KQRYIYEYFGWEYPETIHWGRLK---IEGGKLSTSK 171 (240)
T ss_pred HHHHHHHHcCCCCCcEEeeeeec---CCCCeecccc
Confidence 55778899999889877776663 3358999997
No 34
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.59 E-value=0.00091 Score=68.37 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=54.9
Q ss_pred CceEEEEecCCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 022242 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (300)
Q Consensus 84 ~~~~vytG~~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt 162 (300)
..+....+=.||| .|||||+..++ +.| +.+.+|..+++-|-|.-.-+.| . .......+.+++..+|++++.
T Consensus 100 g~V~tRFaPsPtG-~LHIGharaal-ln~~~Ar~~~G~~iLRidDTDpk~~R--~---~~e~~~~I~edL~wLGl~wD~- 171 (567)
T PRK04156 100 GKVVMRFAPNPSG-PLHLGHARAAI-LNDEYAKMYGGKFILRFEDTDPRTKR--P---DPEAYDMILEDLKWLGVKWDE- 171 (567)
T ss_pred CeEEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEeEccCCCCccc--c---hHHHHHHHHHHHHHcCCCCCC-
Confidence 3577888999998 89999999985 555 6666788888888776421122 1 122224567778889998875
Q ss_pred EEEeccccC
Q 022242 163 FIFSDFDYV 171 (300)
Q Consensus 163 ~I~~ns~~~ 171 (300)
++.||+..
T Consensus 172 -~~~qSdr~ 179 (567)
T PRK04156 172 -VVIQSDRL 179 (567)
T ss_pred -ccCcccCH
Confidence 56777765
No 35
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.58 E-value=0.00065 Score=62.30 Aligned_cols=158 Identities=14% Similarity=0.143 Sum_probs=87.5
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCC
Q 022242 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~ 172 (300)
.||| .|||||+..+++.-.+.+..|-.+++-|=|.-. .| .. ......+.+++..+|++.+. ++.||+-.
T Consensus 9 sPtG-~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~--~R--~~---~~~~~~I~~dL~wlGl~wD~--~~~QS~r~- 77 (238)
T cd00807 9 EPNG-YLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNP--EK--EE---EEYVDSIKEDVKWLGIKPYK--VTYASDYF- 77 (238)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEecCCCC--cc--cc---hHHHHHHHHHHHHcCCCCCC--ceecccCH-
Confidence 5898 899999999854433556667777777655532 11 11 23334567778889999883 56787753
Q ss_pred cccHHHHH-HH-HhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHH
Q 022242 173 GAFYKNMV-KV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 250 (300)
Q Consensus 173 ~~~~~~~~-~l-~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rd 250 (300)
..|..++ ++ .+-..+-. . ..+.. -..||..|=|-.+ -|.+. .+ +.|..|.|....-..-.-
T Consensus 78 -~~Y~~~~~~L~~~g~aY~~--~----~~~~~--~~i~ptY~lA~vV----DD~~~---gI-ThVvRG~D~l~~t~~Q~~ 140 (238)
T cd00807 78 -DQLYEYAEQLIKKGKAYVH--H----RTGDK--WCIYPTYDFAHPI----VDSIE---GI-THSLCTLEFEDRRPSYYW 140 (238)
T ss_pred -HHHHHHHHHHHHcCCeecC--C----CCCCC--EEEEeccccceEe----ecccc---CC-CeEEechhhhcCCHHHHH
Confidence 3444333 22 11111110 0 00111 1124444443211 04332 23 567788885544344466
Q ss_pred HHHHhCCCCCcee-ecccccCCCCCCCccccCC
Q 022242 251 VAPRIGYHKPALI-ESSFFPALQGETGKMSASD 282 (300)
Q Consensus 251 la~r~~~~kp~~i-~~~~lp~L~g~g~KMSkS~ 282 (300)
+.+.||.+.|..+ ++. + ..+ |.|+||+.
T Consensus 141 l~~aLg~~~P~~~~~~h-l-n~~--g~kLSKR~ 169 (238)
T cd00807 141 LCDALRLYRPHQWEFSR-L-NLT--YTVMSKRK 169 (238)
T ss_pred HHHHcCCCCCceeEEEE-E-CCC--CCCccCcC
Confidence 7788999888533 232 2 344 58999997
No 36
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.57 E-value=0.00081 Score=67.94 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=40.3
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCC
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 283 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p 283 (300)
..|..|.||..+.-.-+-+.+.+|...|...|.+++.+++| +||||...
T Consensus 198 thVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g--~KLSKR~g 246 (513)
T PRK14895 198 THIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG--AKLSKRHG 246 (513)
T ss_pred CEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCC--CccccccC
Confidence 34558998888877778888999998898888888877776 89999973
No 37
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.53 E-value=0.00069 Score=61.10 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=47.3
Q ss_pred CCceEEEEecCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe-ccc--cccc---cC-CCHHH-HHHHHHHHHHH
Q 022242 83 GEKFYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDE--KCMW---KN-LSVEE-SQRLARENAKD 151 (300)
Q Consensus 83 ~~~~~vytG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~-D~~--~~~~---r~-l~~e~-i~~~~~~~~~~ 151 (300)
++.-...||-=|-+ .+||||+-++. .+.++++..|..|....| |++ +... +. .++.+ ++++.....++
T Consensus 19 ~~~~~y~~gpt~y~-~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~ 97 (213)
T cd00672 19 GLVTMYVCGPTVYD-YAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFED 97 (213)
T ss_pred CCceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44445667888886 89999976554 444555555766665533 333 2111 22 56655 45555677778
Q ss_pred HHHcCCCCC
Q 022242 152 IIACGFDVT 160 (300)
Q Consensus 152 iiA~G~dp~ 160 (300)
+.++|+++-
T Consensus 98 ~~~l~i~~~ 106 (213)
T cd00672 98 MKALNVLPP 106 (213)
T ss_pred HHHcCCCCC
Confidence 888999863
No 38
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.53 E-value=0.00026 Score=71.51 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=42.5
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCCc-e-eecccccC-CCCCCCccccCCCCCeeecCCCHH
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA-L-IESSFFPA-LQGETGKMSASDPNSAIYVTDSAK 294 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~kp~-~-i~~~~lp~-L~g~g~KMSkS~p~saI~L~D~p~ 294 (300)
++--+|.||..|+.-...+++.+|+..+. - +.+..+-. +.+.|+|||||. +|.|++.|=-+
T Consensus 275 ~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~-Gn~i~l~dll~ 338 (507)
T PRK01611 275 VIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRA-GNVVTLDDLLD 338 (507)
T ss_pred EEEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCC-CceeEHHHHHH
Confidence 44469999999999999999999986332 1 22322222 223368999999 88999877333
No 39
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.43 E-value=0.0012 Score=66.17 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=43.2
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecC
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
++|..|.||..+...-..+.+.+|.+.|...|.+++-.++| +||||.. + ++.|.
T Consensus 199 thvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~-g-~~~l~ 252 (470)
T TIGR00464 199 THVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRD-G-ATSIM 252 (470)
T ss_pred CEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccC-C-CccHH
Confidence 44559999999888889999999998888888787777775 8999997 3 55554
No 40
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.41 E-value=0.0026 Score=60.22 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=46.7
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
-||| .|||||+..++ .+| +.++.|..+++-|-|... .| .. ......+.+++..+|++.+.. ++.||+-.
T Consensus 13 SPTG-~LHlG~~rtAL-~n~l~Ar~~~G~~iLRiEDtD~--~R-~~----~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~ 82 (299)
T PRK05710 13 SPSG-PLHFGSLVAAL-GSWLDARAHGGRWLLRIEDIDP--PR-EV----PGAADAILADLEWLGLHWDGP-VLYQSQRH 82 (299)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCC--Cc-cc----hHHHHHHHHHHHHCCCCCCCC-ceEeeccH
Confidence 5898 89999999995 555 555567777887776532 12 11 233446788888999998854 44577653
No 41
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.005 Score=61.76 Aligned_cols=94 Identities=22% Similarity=0.359 Sum_probs=57.7
Q ss_pred CceEEEEecCCCCCCcchhhhHHHH---HH-HHHHHhCCCeEEEEEecccccccc---CCC-HHHHHH------------
Q 022242 84 EKFYLYTGRGPSSEALHLGHLVPFM---FT-KYLQDAFKVPLVIQLTDDEKCMWK---NLS-VEESQR------------ 143 (300)
Q Consensus 84 ~~~~vytG~~PTg~~lHlGhli~~~---~~-~~lQ~~~~~~v~I~I~D~~~~~~r---~l~-~e~i~~------------ 143 (300)
....+=||+.||| .+||||+-=++ ++ +-|.+.++-.-+|.++|+..=+.+ +++ .+...+
T Consensus 19 ~~~~v~tGisPSG-~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGISPSG-LIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCcCCCC-CcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 4678999999998 89999975332 33 336666554446678898753432 233 233333
Q ss_pred ------HHHHHHHHHH----HcCCCCCceEEEeccccCCcccHHHHHH
Q 022242 144 ------LARENAKDII----ACGFDVTKTFIFSDFDYVGGAFYKNMVK 181 (300)
Q Consensus 144 ------~~~~~~~~ii----A~G~dp~kt~I~~ns~~~~~~~~~~~~~ 181 (300)
++..+.+.+. .+|+++ .++++++..+.-.|..+++
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~Yk~G~~~~~i~ 142 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATELYKSGLYDEAIR 142 (521)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCce---EEEEhHHhhhcccHHHHHH
Confidence 3333444443 368854 6777877766666665554
No 42
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.38 E-value=0.00074 Score=65.29 Aligned_cols=195 Identities=18% Similarity=0.261 Sum_probs=76.1
Q ss_pred CCceEEEEecCCCCCCcchhhhHHHH----HHHHHHHhCCCeEEEEEeccccccc----------------cCCC-----
Q 022242 83 GEKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEKCMW----------------KNLS----- 137 (300)
Q Consensus 83 ~~~~~vytG~~PTg~~lHlGhli~~~----~~~~lQ~~~~~~v~I~I~D~~~~~~----------------r~l~----- 137 (300)
+.+..+=||+.||| .+||||+--++ ..+-|++.+.-.-.|...|+---+. ++++
T Consensus 22 ~~~~v~~sG~sPSG-~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP 100 (360)
T PF01921_consen 22 KEPYVFASGISPSG-LPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDP 100 (360)
T ss_dssp -SEEEEEEEE--SS----HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-T
T ss_pred CccEEEecCCCCCC-CcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCC
Confidence 46889999999999 89999976443 2334777644433555666542121 1110
Q ss_pred HHHHHHHHHHHHH----HHHHcCCCCCceEEEeccccCCcccHHHHHH--HHhhcCHHHHHHhh-C--CCC--------C
Q 022242 138 VEESQRLARENAK----DIIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF-G--FTG--------E 200 (300)
Q Consensus 138 ~e~i~~~~~~~~~----~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~~--l~k~~t~~~~~~~~-g--~~~--------~ 200 (300)
...-..++.-+.+ .+-.+|+++ .++++++....-.|.+.++ +.+.-.+.+++..+ | ..+ .
T Consensus 101 ~G~~~SyaeH~~~~~~~~L~~~gie~---e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC 177 (360)
T PF01921_consen 101 FGCHESYAEHFNAPFEEFLDEFGIEY---EFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRERPETYSPFLPIC 177 (360)
T ss_dssp TSSSSCHHHHHHHHHHHHHHTTT------EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHHcCCce---EEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeec
Confidence 0111223333333 334579854 6777887766545554442 44444444444432 1 000 0
Q ss_pred cc---------------ccccchhhhhcCCCCCCCcccccc-----------------CCCCcceeeccccCchh---HH
Q 022242 201 DH---------------IGKVSFPPVQAVPSFPSSFPHLFS-----------------GKDHLRCLIPCAIDQDP---YF 245 (300)
Q Consensus 201 ~~---------------~g~~~YP~lQaad~~~~~f~~i~~-----------------~~~~~~clvp~G~DQd~---~~ 245 (300)
.+ -+++.|-+--+=..-. -++.. ++.+ .-|.|.|+-. -.
T Consensus 178 ~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~---~~i~~g~gKL~WkvDW~mRW~~lgVd---fEp~GKDH~~~GGS~ 251 (360)
T PF01921_consen 178 EKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGE---VDITGGNGKLQWKVDWPMRWAALGVD---FEPFGKDHASPGGSY 251 (360)
T ss_dssp TTTEE--EEEEEEE--SSSEEEEE--TTS---E---EETTTT-EEE-HHHHHHHHHHHTT-S---EEEEEHHHHCTTSHH
T ss_pred cccCCcccceeeEeecCCCEEEEEecCCCCEEE---EecCCCcccccCCCcChhhhhhcCce---eccCCCccCCCCCCh
Confidence 12 2333343300000000 00110 1221 2377888666 67
Q ss_pred HHHHHHHHH-hCCCCCceeecccccCCCCCCCccccCCCCCeeecC
Q 022242 246 RMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 246 ~l~rdla~r-~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
..+.+||++ +|.+.|..+.--++ ++.| ++|||||. ++.|-+.
T Consensus 252 d~~~~I~~~i~g~~pP~~~~YE~~-~~~g-~~kmSsSk-G~~~t~~ 294 (360)
T PF01921_consen 252 DTSKRIAREILGYEPPVPFPYEFF-LDKG-GGKMSSSK-GNGITPE 294 (360)
T ss_dssp HHHHHHHHHCC-----EEEEE--E-EES----------------HH
T ss_pred hhHHHHHHHHhCCCCCCCCCeeEE-EeCC-CcccccCC-CCccCHH
Confidence 788999955 78877865533322 3455 46999999 6666543
No 43
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.22 E-value=0.004 Score=62.60 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=42.7
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecC
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
+.|..|.||..+.-.-+.+.+.+|.+.|...|.+++-.++| +||||.. + ++.+.
T Consensus 209 thvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~-g-~~~l~ 262 (476)
T PRK01406 209 THVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRH-G-ATSVE 262 (476)
T ss_pred CEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcC-C-ccCHH
Confidence 45569999888887788899999998888888777766665 8999997 3 55554
No 44
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.12 E-value=0.0099 Score=55.63 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=45.7
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
-||| .|||||+..+++...+-+..|-.+++-|=|.-. .| ... +....+.+++.-+|++.+.. ++.||+..
T Consensus 8 SPtG-~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~--~R-~~~----~~~~~I~~dL~wLGl~wDe~-~~~QS~r~ 77 (272)
T TIGR03838 8 SPSG-PLHFGSLVAALGSYLDARAHGGRWLVRIEDLDP--PR-EVP----GAADDILRTLEAYGLHWDGE-VVYQSQRH 77 (272)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCC--CC-CCh----HHHHHHHHHHHHcCCCCCCC-eeeeeCCH
Confidence 4898 899999999954433556667777887766532 12 112 23334666777789998764 45677764
No 45
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.11 E-value=0.0047 Score=62.61 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=44.7
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
.||| .|||||+-.++ ++| +.+.+|-.+++-|=|.-. .| + ..++...+.+++.-+|++++. ++.||+..
T Consensus 19 sPtG-~LHiGharaAl-ln~l~Ar~~gG~~iLRiEDTDp--~R--~---~~e~~~~I~~dL~WLGl~wD~--~~~qSdr~ 87 (523)
T PLN03233 19 EPSG-YLHIGHAKAAL-LNDYYARRYKGRLILRFDDTNP--SK--E---KAEFEESIIEDLGKIEIKPDS--VSFTSDYF 87 (523)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEECCCCC--Cc--c---chHHHHHHHHHHHHhCCCCCC--CccccccH
Confidence 5788 89999999984 555 556666666776644421 11 1 123344577777788999875 46677765
No 46
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.09 E-value=0.0076 Score=61.94 Aligned_cols=71 Identities=24% Similarity=0.316 Sum_probs=46.4
Q ss_pred ecCCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccc
Q 022242 91 GRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 169 (300)
Q Consensus 91 G~~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~ 169 (300)
-=.||| .|||||+..++ ++| +.+.+|-.+++-|=|.-. .| +..++...++.++..+|++++.- ++.||+
T Consensus 58 APsPtG-yLHIGharaAl-lN~l~Ar~~gG~~iLRiEDTDp--~R-----~~~e~~d~IleDL~WLGl~wDe~-~~~QSd 127 (601)
T PTZ00402 58 PPEASG-FLHIGHAKAAL-INSMLADKYKGKLVFRFDDTNP--SK-----EKEHFEQAILDDLATLGVSWDVG-PTYSSD 127 (601)
T ss_pred CCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEEcCCCC--cc-----cCHHHHHHHHHHHHHCCCCCCCc-eeeccc
Confidence 345788 89999999984 555 666667667776644421 01 12234446778888899998753 455777
Q ss_pred cC
Q 022242 170 YV 171 (300)
Q Consensus 170 ~~ 171 (300)
..
T Consensus 128 r~ 129 (601)
T PTZ00402 128 YM 129 (601)
T ss_pred cH
Confidence 64
No 47
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=96.84 E-value=0.012 Score=59.06 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=47.0
Q ss_pred ceEEE-EecCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe-ccc--cccc---cC-CCHHH-HHHHHHHHHHHH
Q 022242 85 KFYLY-TGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDE--KCMW---KN-LSVEE-SQRLARENAKDI 152 (300)
Q Consensus 85 ~~~vy-tG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~-D~~--~~~~---r~-l~~e~-i~~~~~~~~~~i 152 (300)
.+.+| ||-=|.+ .+||||+.+.. .+.++++..|..|....+ |++ +... .. .++.+ +..+..+..+++
T Consensus 23 ~v~~yvcgPtvy~-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 23 KVKMYVCGPTVYD-YAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred cceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34566 9999997 89999976543 445555556766666543 333 3222 11 56655 444556778888
Q ss_pred HHcCC-CCC
Q 022242 153 IACGF-DVT 160 (300)
Q Consensus 153 iA~G~-dp~ 160 (300)
.++|+ .|+
T Consensus 102 ~~Lgi~~~d 110 (463)
T PRK00260 102 DALNVLPPD 110 (463)
T ss_pred HHcCCCCCC
Confidence 89999 444
No 48
>PLN02627 glutamyl-tRNA synthetase
Probab=96.73 E-value=0.027 Score=57.29 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=48.4
Q ss_pred ceEEEEecCCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce-
Q 022242 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT- 162 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt- 162 (300)
++.+=.-=-||| .|||||+..++ .+| +.+..|-.+++-|=|--. .| ... .....+.+++.-+|++.+..
T Consensus 45 ~vr~RFAPSPTG-~LHiG~aRtAL-~n~l~Ar~~gG~fiLRIEDTD~--~R-~~~----e~~~~I~~~L~WLGl~wDegp 115 (535)
T PLN02627 45 PVRVRFAPSPTG-NLHVGGARTAL-FNYLFARSKGGKFVLRIEDTDL--AR-STK----ESEEAVLRDLKWLGLDWDEGP 115 (535)
T ss_pred ceEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHhCCEEEEEeCcCCC--CC-CCh----HHHHHHHHHHHHcCCCCCcCc
Confidence 333333446788 89999999985 555 566667777777766532 12 222 22234666677789988753
Q ss_pred ------EEEeccccC
Q 022242 163 ------FIFSDFDYV 171 (300)
Q Consensus 163 ------~I~~ns~~~ 171 (300)
-.|.||+-.
T Consensus 116 ~~gg~~gpy~QSeR~ 130 (535)
T PLN02627 116 DVGGEYGPYRQSERN 130 (535)
T ss_pred ccCCCCCCeeeeccH
Confidence 246777653
No 49
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=96.43 E-value=0.0078 Score=53.92 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=33.1
Q ss_pred ccccCchhHHHHHHHHHHHhCCC-CCceee--cccccCCCCCCCccccCC
Q 022242 236 PCAIDQDPYFRMTRDVAPRIGYH-KPALIE--SSFFPALQGETGKMSASD 282 (300)
Q Consensus 236 p~G~DQd~~~~l~rdla~r~~~~-kp~~i~--~~~lp~L~g~g~KMSkS~ 282 (300)
.+|.||..|+.-.+.+++.+|.. +|...| ..++.+-+ |+||||..
T Consensus 164 v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~--~~kmS~R~ 211 (212)
T cd00671 164 VVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPK--EGKMSTRA 211 (212)
T ss_pred EECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCC--CCCCCCCC
Confidence 69999999999999999999985 333222 24444322 58999975
No 50
>PLN02859 glutamine-tRNA ligase
Probab=96.41 E-value=0.072 Score=56.42 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=52.4
Q ss_pred CCHHHHHHHHhc-CCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHH
Q 022242 71 RDLNDILDAYEK-GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENA 149 (300)
Q Consensus 71 ~d~~~il~~~~~-~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~ 149 (300)
...+.+-+.++. +.++..=..=.||| .|||||+-.+++...+.+.+|-.+++-|=|.-. .| +..++...+.
T Consensus 249 ~~~~~~~~hl~~t~g~V~tRFaPsPtG-~LHiGharaallN~~~Ar~~~G~~~LRieDTdp--~r-----~~~e~~~~I~ 320 (788)
T PLN02859 249 NTKEILEKHLKATGGKVYTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNP--EA-----EKKEYIDHIE 320 (788)
T ss_pred CcHHHHHHHHhhcCCceEEEeCCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEecCCCC--Cc-----cchHHHHHHH
Confidence 333444344443 22344444446788 899999999854433666666666766644321 01 1123334566
Q ss_pred HHHHHcCCCCCceEEEeccccC
Q 022242 150 KDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 150 ~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
.++.-+|+++++ ++.||++.
T Consensus 321 edL~WLG~~~d~--~~~qSd~f 340 (788)
T PLN02859 321 EIVEWMGWEPFK--ITYTSDYF 340 (788)
T ss_pred HHHHHcCCCCCC--cccccHhH
Confidence 677778999875 45677765
No 51
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=96.36 E-value=0.053 Score=53.97 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=45.6
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
-||| .|||||+..+++.-.+-+..|-.+++-|=|.-. .| ... .....+..++.-+|++.+. .|.||+-.
T Consensus 7 SPTG-~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~--~R-~~~----e~~~~I~~~L~WlGl~wDe--~y~QSeR~ 75 (433)
T PRK12410 7 SPTG-DMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDK--ER-NIE----GKDKEILEILNLFGISWDK--LVYQSENL 75 (433)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC--Cc-CCh----HHHHHHHHHHHHcCCCCCC--CeehhccH
Confidence 4898 899999999954433666667778887766532 12 122 2223466667778999885 46787754
No 52
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=95.81 E-value=0.13 Score=51.53 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=44.7
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
-||| .|||||+..++ .+| +.+..|..+++-|-|--. .| +.+ .....+.+++..+|++.+. .|++|+..
T Consensus 10 SPTG-~lHiG~artAL-~n~l~Ar~~gG~fiLRIEDTD~--~R--s~~---~~~~~I~e~L~wLGI~~De--~y~QSer~ 78 (445)
T PRK12558 10 SPTG-YLHVGNARTAL-LNWLYARKHGGKFILRIDDTDL--ER--SKQ---EYADAIAEDLKWLGINWDR--TFRQSDRF 78 (445)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEeccCCc--cc--chH---HHHHHHHHHHHHcCCCCCc--cccHHHHH
Confidence 5898 89999999985 555 556667778887766542 11 222 2223466667778998874 46666654
No 53
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.23 E-value=0.11 Score=52.04 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=45.5
Q ss_pred eEEE-EecCCCCCCcchhhhH---HHHHH-HHHHHhCC-CeEEEEEeccc-cccccC----CCHHHH-HHHHHHHHHHHH
Q 022242 86 FYLY-TGRGPSSEALHLGHLV---PFMFT-KYLQDAFK-VPLVIQLTDDE-KCMWKN----LSVEES-QRLARENAKDII 153 (300)
Q Consensus 86 ~~vy-tG~~PTg~~lHlGhli---~~~~~-~~lQ~~~~-~~v~I~I~D~~-~~~~r~----l~~e~i-~~~~~~~~~~ii 153 (300)
+.+| ||-=+- +..||||.- .+..+ +||+..++ +..+-=|||.. |.+.|. .++.++ .++..++.+++-
T Consensus 23 V~mYvCGpTVY-d~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~ 101 (464)
T COG0215 23 VKMYVCGPTVY-DYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMD 101 (464)
T ss_pred EEEEecCCccC-CccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 5555 344444 589999954 45544 45777655 44343499987 665542 577665 445567788888
Q ss_pred HcCCC
Q 022242 154 ACGFD 158 (300)
Q Consensus 154 A~G~d 158 (300)
|+|+-
T Consensus 102 aL~v~ 106 (464)
T COG0215 102 ALNVL 106 (464)
T ss_pred HhCCC
Confidence 88884
No 54
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=94.73 E-value=0.082 Score=54.24 Aligned_cols=137 Identities=14% Similarity=0.207 Sum_probs=74.1
Q ss_pred hhccCcccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceEEE
Q 022242 10 EEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLY 89 (300)
Q Consensus 10 ~~~~~~~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vy 89 (300)
++..+.+...|++. .-..+.+++....... ++.+++++.. |. .+ ....+...+.+ +...+.-.+.
T Consensus 31 ~~~p~~~~~~~~~~----~~~~~~v~~v~~~~~~-~~~~~~~~~~---~~--~~----~~~~~~~~~~~-L~~a~~~~vv 95 (560)
T TIGR00463 31 SNNPELRKKAKEVL----EEVEPIVEEVNDLSSE-ELKELKKSLG---VD--KK----KKEKKAKGLIE-LPGAKMGEVV 95 (560)
T ss_pred ccCCccCcchhhHH----HHHHHHHHHHhhcCHH-HHHHHHhhhc---ch--hh----hccccccCCCC-CCCCcCCeeE
Confidence 34567888889864 3366677765543322 3555555421 10 00 00111111111 1111111133
Q ss_pred Eec--CCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec
Q 022242 90 TGR--GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (300)
Q Consensus 90 tG~--~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~n 167 (300)
|=| .||| .|||||+..+++...+.+.+|..+++-|-|.-. .| -. .++...+.+++..+|++++. ++.|
T Consensus 96 tRFaPsPtG-~LHiGharaalln~~~Ar~~~G~~iLRidDTDp--~R-~~----~e~~~~I~edL~wLGi~~d~--~~~q 165 (560)
T TIGR00463 96 MRFAPNPSG-PLHIGHARAAILNQYFAKKYKGKLIIRFDDTDP--RR-VK----PEAYDMILEDLDWLGVKGDE--VVYQ 165 (560)
T ss_pred EEeCCCCCC-CccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCc--cc-cc----HHHHHHHHHHHHHcCCCCCc--cccc
Confidence 333 5787 899999999854434666677777777766532 11 11 23444577788889999874 5677
Q ss_pred cccC
Q 022242 168 FDYV 171 (300)
Q Consensus 168 s~~~ 171 (300)
|+..
T Consensus 166 Sd~~ 169 (560)
T TIGR00463 166 SDRI 169 (560)
T ss_pred cccH
Confidence 7765
No 55
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=94.60 E-value=0.14 Score=48.92 Aligned_cols=69 Identities=14% Similarity=0.271 Sum_probs=42.0
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
.||| .|||||+..++ .+| +.+..|-.+++-|=|.-. .| ..+ ......+.++..+|++++. -++.||+-.
T Consensus 9 sPtG-~lHiG~~r~al-~n~~~Ar~~~G~~iLRieDtD~--~R--~~~---~~~~~i~~~L~wlGl~~D~-~~~~QS~r~ 78 (314)
T PF00749_consen 9 SPTG-YLHIGHARTAL-LNYLFARKYGGKFILRIEDTDP--ER--CRP---EFYDAILEDLRWLGLEWDY-GPYYQSDRL 78 (314)
T ss_dssp -SSS-S-BHHHHHHHH-HHHHHHHHTTSEEEEEEETSST--TT--CHH---HHHHHHHHHHHHHT---ST-CEEEGGGGH
T ss_pred CCCC-CcccchhHHHH-HHHHHHhccCceEEEecccccc--cc--chh---hHHHHHHhheeEEEEecCC-eEEeHHHHH
Confidence 5898 89999999995 555 666677778887776642 12 222 3333566777778998862 345577653
No 56
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=94.58 E-value=0.03 Score=52.86 Aligned_cols=55 Identities=20% Similarity=0.104 Sum_probs=35.1
Q ss_pred eeccccCch-hHHHHHHHHHHHhCCC-CCc-eeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQD-PYFRMTRDVAPRIGYH-KPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd-~~~~l~rdla~r~~~~-kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+..+|.||. +|+....-...-++.. .|. .+.+-++. +.| |+|||||. +|.|++.|
T Consensus 229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~-g~KmSKS~-gn~v~~~d 286 (312)
T cd00668 229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVL-DEG-GQKMSKSK-GNVIDPSD 286 (312)
T ss_pred EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEE-cCC-CccccccC-CCcCCHHH
Confidence 447899998 7766555444445543 232 22345554 333 48999999 89999865
No 57
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=94.21 E-value=0.28 Score=50.22 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=50.9
Q ss_pred HHHHHhcCCceEEEEec--CCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHH
Q 022242 76 ILDAYEKGEKFYLYTGR--GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDII 153 (300)
Q Consensus 76 il~~~~~~~~~~vytG~--~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~ii 153 (300)
+.+.+++|+--.+.|=| .||| .|||||+-.+++...+.+.+|-.+++-|=|--. .| -. .+....+..++.
T Consensus 18 ~~~dl~~~~~~~v~tRFaPsPtG-~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~--~r-~~----~e~~~~I~~dL~ 89 (554)
T PRK05347 18 IDEDLASGKHTRVHTRFPPEPNG-YLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNP--EK-ED----QEYVDSIKEDVR 89 (554)
T ss_pred HHhHHhcCCcCceEEEeCCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEECCCCC--Cc-CC----hHHHHHHHHHHH
Confidence 34445555322244444 5788 899999999854433666667777776644321 11 11 233345667777
Q ss_pred HcCCCCCceEEEeccccC
Q 022242 154 ACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 154 A~G~dp~kt~I~~ns~~~ 171 (300)
-+|++++.- ++.||+..
T Consensus 90 wLGi~~d~~-~~~qS~r~ 106 (554)
T PRK05347 90 WLGFDWSGE-LRYASDYF 106 (554)
T ss_pred HcCCCCCCC-ceeeecCH
Confidence 789998432 45566654
No 58
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=93.84 E-value=0.15 Score=52.40 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=48.9
Q ss_pred ceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 022242 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (300)
++..=..=.||| .|||||+..+++...+.+.+|-.+++-|=|.-. .| +...+...+.+++.-+|++++..
T Consensus 51 kv~tRFaPsPtG-~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp--~r-----~~~e~~~~I~~dL~wLGi~~D~~-- 120 (574)
T PTZ00437 51 KPYFRFPPEPNG-FLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNP--ET-----EEQVYIDAIMEMVKWMGWKPDWV-- 120 (574)
T ss_pred cEEEEeCCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEECCCCc--cc-----cChHHHHHHHHHHHHcCCCCCCC--
Confidence 344444556888 899999999854444666667777776655431 11 12234445777777899998864
Q ss_pred EeccccC
Q 022242 165 FSDFDYV 171 (300)
Q Consensus 165 ~~ns~~~ 171 (300)
+.+|++.
T Consensus 121 ~~qS~y~ 127 (574)
T PTZ00437 121 TFSSDYF 127 (574)
T ss_pred CcCchhH
Confidence 3566665
No 59
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=93.81 E-value=0.19 Score=51.10 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=44.1
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
.||| .|||||+-.+++...+.+.+|-.+++-|=|.-. .| -. .++...+.+++.-+|++++.. ++.||+..
T Consensus 8 sPtG-~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~--~r-~~----~e~~~~I~~dL~wLG~~~d~~-~~~qS~~~ 77 (522)
T TIGR00440 8 EPNG-YLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNP--VK-ED----PEYVESIKRDVEWLGFKWEGK-IRYSSDYF 77 (522)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCc--cc-CC----hHHHHHHHHHHHHcCCCCCCC-ceEccccH
Confidence 5898 899999999854433666667777776654422 11 11 233335667777789998432 34577664
No 60
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=93.74 E-value=0.15 Score=51.27 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=45.5
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
.||| -|||||+..++ .+| +-+++|-..++-|=|.-. .| -+.+ ....+..++.-+|++++.. ++.||+..
T Consensus 17 sPtG-~LHiG~artAl-~N~~~Ar~~~G~fiLRiEDTD~--~R-~~~e----~~~~I~~~L~WLGl~wde~-~~~QS~r~ 86 (472)
T COG0008 17 SPTG-YLHIGHARTAL-LNYLYARKYGGKFILRIEDTDP--ER-ETPE----AEDAILEDLEWLGLDWDEG-PYYQSERF 86 (472)
T ss_pred CCCC-ccchHHHHHHH-HHHHHHHHhCCEEEEEecCCCC--CC-CCHH----HHHHHHHHHHhcCCCCCCc-eeehhhhH
Confidence 4687 79999999984 566 556667777777655431 12 2222 2224666677789999886 66787764
No 61
>PLN02907 glutamate-tRNA ligase
Probab=93.36 E-value=0.3 Score=51.76 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=45.3
Q ss_pred cCCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccc
Q 022242 92 RGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 170 (300)
Q Consensus 92 ~~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~ 170 (300)
=.||| .|||||+-.++ ++| +.+.+|-.+++-|=|.-. .| -.. ++...+.+++.-+|+++++. +.||++
T Consensus 220 PsPtG-~LHiG~ar~al-~n~~~Ar~~~G~~iLR~eDTdp--~r-~~~----e~~~~I~~dl~wLG~~~d~~--~~qS~r 288 (722)
T PLN02907 220 PEPSG-YLHIGHAKAAL-LNQYFARRYKGKLIVRFDDTNP--SK-ESD----EFVENILKDIETLGIKYDAV--TYTSDY 288 (722)
T ss_pred CCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEecCCCC--Cc-CCh----HHHHHHHHHHHHcCCCCCCc--cccccc
Confidence 35788 89999999985 555 667677777776644421 11 112 33335667777789999864 567776
Q ss_pred C
Q 022242 171 V 171 (300)
Q Consensus 171 ~ 171 (300)
.
T Consensus 289 ~ 289 (722)
T PLN02907 289 F 289 (722)
T ss_pred H
Confidence 5
No 62
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=92.56 E-value=0.44 Score=50.04 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=48.4
Q ss_pred CceEEEEec-CCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEeccc-c--ccc---c-CCCHHH-HHHHHHHHHHH
Q 022242 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE-K--CMW---K-NLSVEE-SQRLARENAKD 151 (300)
Q Consensus 84 ~~~~vytG~-~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~~-~--~~~---r-~l~~e~-i~~~~~~~~~~ 151 (300)
++++|-|++ -|+| .+||||+.+.+ .+.++++.-|..|....|+++ . ... + ..+..+ +.+++.++.+.
T Consensus 2 ~~~~itt~~py~ng-~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANG-PIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCC-cccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 467888888 5888 89999987654 344455555766766655554 2 111 1 145544 45566667777
Q ss_pred HHHcCCCCC
Q 022242 152 IIACGFDVT 160 (300)
Q Consensus 152 iiA~G~dp~ 160 (300)
+.++|++++
T Consensus 81 ~~~l~i~~d 89 (673)
T PRK00133 81 FAGFGISFD 89 (673)
T ss_pred HHHhCCCCC
Confidence 778887654
No 63
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=92.51 E-value=0.5 Score=50.37 Aligned_cols=86 Identities=17% Similarity=0.243 Sum_probs=50.5
Q ss_pred HHHHhcCCceEEEEec--CCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHH
Q 022242 77 LDAYEKGEKFYLYTGR--GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 154 (300)
Q Consensus 77 l~~~~~~~~~~vytG~--~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA 154 (300)
.+.++.|+.-.+.|=| .||| .|||||+..+++...+.+.+|-.+++-|=|.-. .| -. .++...+..++.-
T Consensus 21 ~~~l~~g~~~~v~tRFaPsPtG-~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~--~r-~~----~e~~~~I~~dl~w 92 (771)
T PRK14703 21 EEDLEAGRYPRVVTRFPPEPNG-YLHIGHAKSILLNFGIARDYGGRCHLRMDDTNP--ET-ED----TEYVEAIKDDVRW 92 (771)
T ss_pred HHHHhcCCCCceEEEeCcCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCC--Cc-CC----hHHHHHHHHHHHH
Confidence 3445554322344444 5787 899999999854433666667677776644321 01 11 2333456667777
Q ss_pred cCCCCCceEEEeccccC
Q 022242 155 CGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 155 ~G~dp~kt~I~~ns~~~ 171 (300)
+|++++.. ++.||+..
T Consensus 93 LG~~wd~~-~~~qS~~~ 108 (771)
T PRK14703 93 LGFDWGEH-LYYASDYF 108 (771)
T ss_pred cCCCCCCC-ceEeecCH
Confidence 89987643 45677664
No 64
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=92.51 E-value=0.62 Score=49.95 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=47.7
Q ss_pred CCceEEEEecCCC--CCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe-cccccc-----cc-CCCH-HHHHHHHHHHH
Q 022242 83 GEKFYLYTGRGPS--SEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-----WK-NLSV-EESQRLARENA 149 (300)
Q Consensus 83 ~~~~~vytG~~PT--g~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~-D~~~~~-----~r-~l~~-e~i~~~~~~~~ 149 (300)
++++++..|+ |+ | .||+||+.... ++.++|+.-|..|....| |.|..- .+ ..+. +-+.++..+..
T Consensus 31 ~~~~~i~~~p-Py~nG-~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 108 (805)
T PRK00390 31 SKKYYVLDMF-PYPSG-GLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMK 108 (805)
T ss_pred CCCEEEEccC-CCCCC-CcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3578888887 65 7 89999988653 344577766766666555 433311 11 2333 33555556677
Q ss_pred HHHHHcCCCCC
Q 022242 150 KDIIACGFDVT 160 (300)
Q Consensus 150 ~~iiA~G~dp~ 160 (300)
+++.++|+..+
T Consensus 109 ~~~~~lGi~~D 119 (805)
T PRK00390 109 KQLKSLGFSYD 119 (805)
T ss_pred HHHHHhCCccc
Confidence 77888998655
No 65
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=91.40 E-value=0.19 Score=48.26 Aligned_cols=54 Identities=24% Similarity=0.198 Sum_probs=31.6
Q ss_pred eeccccCchh-HHHHH--HHHHHHhCCCCC-ceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDP-YFRMT--RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~-~~~l~--rdla~r~~~~kp-~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+...|.|+-. |+-.. .-++ -.+...+ ..+.+.++....| +|||||. +|.|++.|
T Consensus 255 ~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g--~KmSKS~-gn~i~~~~ 312 (338)
T cd00818 255 FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDG--RKMSKSL-GNYVDPQE 312 (338)
T ss_pred EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCC--CCCCCCC-CCcCCHHH
Confidence 4467999875 33222 2222 2233222 2334566644555 8999999 89999865
No 66
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=90.71 E-value=0.18 Score=51.76 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=42.2
Q ss_pred eccccCchhHHHHHHHHHHHhCCCCCc-eeecccccCCCCCCCccccCCCCCeeecCCCHHH
Q 022242 235 IPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (300)
Q Consensus 235 vp~G~DQd~~~~l~rdla~r~~~~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~ 295 (300)
--+|.||..|+.-...+++.+|++.|. ..++.+-. ..+ .|||||. ++.|.+.|=.++
T Consensus 332 ~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~-V~~--~kmSkr~-Gn~V~~~dll~~ 389 (566)
T TIGR00456 332 YVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGM-VPL--GSMKTRR-GNVISLDNLLDE 389 (566)
T ss_pred EEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEE-EEC--CCCCccC-CceeeHHHHHHH
Confidence 369999999999999999999986663 33333221 122 6999999 899999864444
No 67
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.59 E-value=0.77 Score=46.78 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=44.3
Q ss_pred ecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 022242 91 GRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTF 163 (300)
Q Consensus 91 G~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~-l~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (300)
-=+||| .|||||.-..++..|+|.+|.-.+++..-|-- + ..-++.+. ..++++--+|+.|++..
T Consensus 206 PPEpSG-yLHIGHAKAALLNqYfa~~~~G~LIvRFDDTN-----PaKE~~eFe~---~IleDl~~LgIkpd~~T 270 (712)
T KOG1147|consen 206 PPEPSG-YLHIGHAKAALLNQYFAQAYQGKLIVRFDDTN-----PAKENEEFED---VILEDLSLLGIKPDRVT 270 (712)
T ss_pred CCCCCc-eeehhhHHHHHHHHHHHHhcCceEEEEecCCC-----cchhhHHHHH---HHHHHHHHhCcCcceee
Confidence 347898 99999999987777899998887777644431 1 23334443 45666666899987654
No 68
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=90.51 E-value=0.8 Score=36.08 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=35.7
Q ss_pred EEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCC
Q 022242 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD 158 (300)
Q Consensus 89 ytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~d 158 (300)
++|-.| +.+|+||+..+.....++ + .+++.++|.+....+ .....++++.....+.++-+|.+
T Consensus 3 ~~~G~F--dp~H~GH~~l~~~a~~~~---d-~~i~~i~~~~~~~~~-~~~~~~~~R~~~l~~~~~~~G~~ 65 (105)
T cd02156 3 RFPGEP--GYLHIGHAKLICRAKGIA---D-QCVVRIDDNPPVKVW-QDPHELEERKESIEEDISVCGED 65 (105)
T ss_pred EeCCCC--CCCCHHHHHHHHHHHHhC---C-cEEEEEcCCCccccc-CChHHHHHHHHHHHHHHHHHHhh
Confidence 344444 589999988753333343 2 467778887753322 34555555555444445555653
No 69
>PLN02224 methionine-tRNA ligase
Probab=90.19 E-value=0.78 Score=47.78 Aligned_cols=94 Identities=11% Similarity=0.109 Sum_probs=55.8
Q ss_pred hcCcccccCCHHHHHHHHhcCCceEEEEec-CCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEE-Eecccc--ccc--
Q 022242 63 RRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEK--CMW-- 133 (300)
Q Consensus 63 ~Rgi~~~~~d~~~il~~~~~~~~~~vytG~-~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~-I~D~~~--~~~-- 133 (300)
.|.|++..++.+.-. ..++++++-|+. -|+| .+||||+.+.+ .+.++++.-|..|... =.|.|. ...
T Consensus 51 ~~~~~~~~~~~~~~~---~~~~~~~ittp~pY~NG-~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A 126 (616)
T PLN02224 51 KRALYCTSSSQESTV---DEADTFVLTTPLYYVNA-PPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSA 126 (616)
T ss_pred cceeeccCCCcccCC---CCCCeEEEeCCCCCCCC-CCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHH
Confidence 355665555555322 245678888888 7787 89999988654 3334555556555554 345553 111
Q ss_pred -c-CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 022242 134 -K-NLSV-EESQRLARENAKDIIACGFDVT 160 (300)
Q Consensus 134 -r-~l~~-e~i~~~~~~~~~~iiA~G~dp~ 160 (300)
+ ..+. +-+++++....+.+.++|++++
T Consensus 127 ~~~g~~p~e~~~~~~~~~~~~~~~l~I~~D 156 (616)
T PLN02224 127 AANGRNPPEHCDIISQSYRTLWKDLDIAYD 156 (616)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Confidence 1 1333 4455566666667777888765
No 70
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.46 E-value=0.99 Score=46.45 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=45.5
Q ss_pred CceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe-cccc--cccc----CCCHHH-HHHHHHHHHHH
Q 022242 84 EKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEK--CMWK----NLSVEE-SQRLARENAKD 151 (300)
Q Consensus 84 ~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~-D~~~--~~~r----~l~~e~-i~~~~~~~~~~ 151 (300)
++++|-|.+- |.| .+||||+.+.+ ...++|+.-|..++.+-| |.|. ...+ ..++++ +.++..+....
T Consensus 5 ~~~~VTtalpY~Ng-~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~ 83 (558)
T COG0143 5 KKILVTTALPYPNG-PPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKEL 83 (558)
T ss_pred CcEEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4566666654 565 89999987554 445577766766655544 5553 2221 156665 45555666667
Q ss_pred HHHcCCCC
Q 022242 152 IIACGFDV 159 (300)
Q Consensus 152 iiA~G~dp 159 (300)
+.+++++-
T Consensus 84 ~~~l~Isf 91 (558)
T COG0143 84 FKALNISF 91 (558)
T ss_pred HHHhCCcc
Confidence 77776653
No 71
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=89.30 E-value=2.2 Score=46.17 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=47.2
Q ss_pred CCceEEEEecCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEecc-cccc-----cc-CCCH-HHHHHHHHHHHHH
Q 022242 83 GEKFYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDD-EKCM-----WK-NLSV-EESQRLARENAKD 151 (300)
Q Consensus 83 ~~~~~vytG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~-~~~~-----~r-~l~~-e~i~~~~~~~~~~ 151 (300)
++++++..|+=...+.||+||+.... ++.++++.-|..|....|-+ |..- .+ ..+. +-+.++..++.++
T Consensus 28 k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~ 107 (842)
T TIGR00396 28 KPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQ 107 (842)
T ss_pred CCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34578888754333389999988653 34556776677776665544 3311 11 2333 3355566677777
Q ss_pred HHHcCCCCC
Q 022242 152 IIACGFDVT 160 (300)
Q Consensus 152 iiA~G~dp~ 160 (300)
+.++|+..+
T Consensus 108 ~~~lG~~~D 116 (842)
T TIGR00396 108 LQALGFSYD 116 (842)
T ss_pred HHHhCCccc
Confidence 888897554
No 72
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=89.03 E-value=0.22 Score=47.33 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=31.5
Q ss_pred ccccCchhHH----HHHHHHHHHhCC---CCCc-eeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 236 PCAIDQDPYF----RMTRDVAPRIGY---HKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 236 p~G~DQd~~~----~l~rdla~r~~~---~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
.+|.||-++. .+-..++.-.+. +.|. .+.+-++. +. |+|||||. +|+|++.|
T Consensus 229 v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~--g~KmSkS~-Gn~v~~~d 288 (314)
T cd00812 229 IGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LE--GEKMSKSK-GNVVTPDE 288 (314)
T ss_pred ecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cC--ccccCCcC-CCCCCHHH
Confidence 5799985533 333444444553 3342 22344443 45 48999999 89999876
No 73
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=88.87 E-value=0.32 Score=47.45 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=32.4
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCC--ceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~~~~l~-rdla~r~~~~kp--~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+...|.||....-.. .-.+..+....| ..+.+-++..+.| +|||||. +|.|++.|
T Consensus 299 ~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~-Gn~v~~~d 356 (382)
T cd00817 299 LLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSL-GNVIDPLD 356 (382)
T ss_pred eeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccC-CCCCCHHH
Confidence 446888886533222 222222333334 3344666655565 8999999 89998765
No 74
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=88.78 E-value=1.3 Score=43.58 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=34.4
Q ss_pred CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEE-Eeccccc-cc----cC-CCHHH-HHHHHHHHHHHHHHcCCCCC
Q 022242 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC-MW----KN-LSVEE-SQRLARENAKDIIACGFDVT 160 (300)
Q Consensus 94 PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~-I~D~~~~-~~----r~-l~~e~-i~~~~~~~~~~iiA~G~dp~ 160 (300)
|.| .+||||+.+.+ ...++++.-|..+... =+|.|.. .. +. .++++ +.++.....+.+.++|++.+
T Consensus 10 ~Ng-~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D 86 (391)
T PF09334_consen 10 PNG-DLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD 86 (391)
T ss_dssp TSS-S-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S
T ss_pred CCC-CCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 677 79999988664 3334455446666554 4577732 21 12 56655 44455556666677777654
No 75
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=88.32 E-value=0.41 Score=49.27 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=41.9
Q ss_pred eeccccCchhHHHHHHHHHHHhCCCCCcee-e--cccccCCCCCCCccccCCCCCeeecCCCHHH
Q 022242 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALI-E--SSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (300)
Q Consensus 234 lvp~G~DQd~~~~l~rdla~r~~~~kp~~i-~--~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~ 295 (300)
+--+|.||..|+.-...+++.+|+..+.-+ | .-++- +. |+||||-. ++.|.|+|=-++
T Consensus 328 IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~--g~kmStR~-G~~v~l~dLlde 388 (562)
T PRK12451 328 LYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KD--GKKMSTRK-GRVVLLEEVLEE 388 (562)
T ss_pred EEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cC--CCCCcCCC-CCeeEHHHHHHH
Confidence 336999999999999999999997533212 2 22332 33 47999998 899999874443
No 76
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=87.17 E-value=1.2 Score=45.14 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=37.7
Q ss_pred CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEE-ecccc--ccc---cC-CCHHHHH-HHHHHHHHHHHHcCCCCC
Q 022242 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEK--CMW---KN-LSVEESQ-RLARENAKDIIACGFDVT 160 (300)
Q Consensus 94 PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I-~D~~~--~~~---r~-l~~e~i~-~~~~~~~~~iiA~G~dp~ 160 (300)
|+| .+||||+.+++ .+.++++..|..|.... .|++. ... +. .+..++. .+..+..+++.++|++++
T Consensus 10 ~ng-~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 10 ANG-KPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CCC-CcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 677 89999987654 34445555576666543 34432 111 12 5665543 334456667777787654
No 77
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=87.03 E-value=1.9 Score=43.33 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=40.9
Q ss_pred ceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEE-ecccc--ccc---cC-CCHHH-HHHHHHHHHHHH
Q 022242 85 KFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEK--CMW---KN-LSVEE-SQRLARENAKDI 152 (300)
Q Consensus 85 ~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I-~D~~~--~~~---r~-l~~e~-i~~~~~~~~~~i 152 (300)
++.|.++.= |+| .+||||+.+++ ++.++++..|..|.... .|++. ... +. .+.++ ++.+..+..+++
T Consensus 2 ~~~i~~~~P~~~g-~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 80 (511)
T PRK11893 2 KFYITTPIYYPNG-KPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLW 80 (511)
T ss_pred CEEEecCCCCCCC-CcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344444433 455 89999976654 34444444465555543 34442 111 11 45544 444555667777
Q ss_pred HHcCCCCC
Q 022242 153 IACGFDVT 160 (300)
Q Consensus 153 iA~G~dp~ 160 (300)
.++|++++
T Consensus 81 ~~l~I~~D 88 (511)
T PRK11893 81 EALNISYD 88 (511)
T ss_pred HHhCCCcC
Confidence 88888654
No 78
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=86.59 E-value=2.7 Score=42.28 Aligned_cols=78 Identities=17% Similarity=0.106 Sum_probs=46.0
Q ss_pred cCCceEEEEecCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe-ccc--cccc---c-CCCHHHH-HHHHHHHHH
Q 022242 82 KGEKFYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDE--KCMW---K-NLSVEES-QRLARENAK 150 (300)
Q Consensus 82 ~~~~~~vytG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~-D~~--~~~~---r-~l~~e~i-~~~~~~~~~ 150 (300)
.++.-...||-=|.+ .+||||..+++ .+.++++..|..|....+ |++ +... + ..++.++ ..+..+..+
T Consensus 19 ~~~v~~yvcgptvy~-~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~ 97 (465)
T TIGR00435 19 QGKVKMYVCGPTVYD-YCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFE 97 (465)
T ss_pred CCcceEEEecCccCC-CcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344455668888887 89999976544 444444444655544322 333 3222 1 2566654 444556777
Q ss_pred HHHHcCCCCC
Q 022242 151 DIIACGFDVT 160 (300)
Q Consensus 151 ~iiA~G~dp~ 160 (300)
++.++|+.++
T Consensus 98 dl~~LgI~~d 107 (465)
T TIGR00435 98 DMKALNVLPP 107 (465)
T ss_pred HHHHhCCCCC
Confidence 8888898644
No 79
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=86.47 E-value=1.8 Score=44.18 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=42.3
Q ss_pred EEEEecCCC--CCCcchhhhHHH----HHHHHHHHhCCCeEEEEEe-ccccc--cc---cC-CCHHH-HHHHHHHHHHHH
Q 022242 87 YLYTGRGPS--SEALHLGHLVPF----MFTKYLQDAFKVPLVIQLT-DDEKC--MW---KN-LSVEE-SQRLARENAKDI 152 (300)
Q Consensus 87 ~vytG~~PT--g~~lHlGhli~~----~~~~~lQ~~~~~~v~I~I~-D~~~~--~~---r~-l~~e~-i~~~~~~~~~~i 152 (300)
++.|.--|+ | .+||||+.+. ..+.++++.-|..|....| |.|.. .. +. .+..+ +.+++....+++
T Consensus 5 ~~i~~~~py~ng-~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 5 ILITSAWPYANG-PLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred EEEecCCCCCCC-CccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344444555 5 8999998765 2344445545666666533 44421 11 12 45544 455666677778
Q ss_pred HHcCCCCC
Q 022242 153 IACGFDVT 160 (300)
Q Consensus 153 iA~G~dp~ 160 (300)
.++|++++
T Consensus 84 ~~l~i~~d 91 (556)
T PRK12268 84 KKLGISYD 91 (556)
T ss_pred HHcCCcCC
Confidence 88888765
No 80
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=85.71 E-value=0.45 Score=47.84 Aligned_cols=51 Identities=25% Similarity=0.247 Sum_probs=31.2
Q ss_pred eccccCchhHHHH---HHHHHHHhCCCCCc-eeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 235 IPCAIDQDPYFRM---TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 235 vp~G~DQd~~~~l---~rdla~r~~~~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
...|.||-.+.-+ +.-.+ ++.+.|. .+++-++. +.| +|||||. +|.|++.|
T Consensus 258 ~~~G~D~~~~h~~~~~a~~~a--~~~~~p~~~~~~g~v~-~~G--~KMSKS~-GN~i~~~d 312 (511)
T PRK11893 258 HLIGKDILRFHAVYWPAFLMA--AGLPLPKRVFAHGFLT-LDG--EKMSKSL-GNVIDPFD 312 (511)
T ss_pred eEecccccccchhHHHHHHHh--CCCCCCCEEEeeccEE-ECC--eeecccC-CcEEcHHH
Confidence 3579998774222 22222 2445553 34455554 454 8999999 89999854
No 81
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=83.75 E-value=2.9 Score=39.68 Aligned_cols=66 Identities=14% Similarity=0.050 Sum_probs=36.8
Q ss_pred CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEE-ecccc--ccc---cC-CCHHHHH-HHHHHHHHHHHHcCCCCC
Q 022242 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEK--CMW---KN-LSVEESQ-RLARENAKDIIACGFDVT 160 (300)
Q Consensus 94 PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I-~D~~~--~~~---r~-l~~e~i~-~~~~~~~~~iiA~G~dp~ 160 (300)
|+| .+||||+.+.. .+.++++..|..|.... .|++. ... +. .++.++. .+...+.+++.++|++++
T Consensus 11 ~ng-~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 87 (319)
T cd00814 11 VNG-VPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFD 87 (319)
T ss_pred CCC-CcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 346 89999988654 33344555565554432 34442 111 11 5665543 344556667778888765
No 82
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=83.57 E-value=0.98 Score=49.43 Aligned_cols=53 Identities=23% Similarity=0.183 Sum_probs=30.5
Q ss_pred eeccccCchh-HHHHHHHHHHHhCCCCC--ceeecccccCCCCCCCccccCCCCCeeec
Q 022242 234 LIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV 289 (300)
Q Consensus 234 lvp~G~DQd~-~~~l~rdla~r~~~~kp--~~i~~~~lp~L~g~g~KMSkS~p~saI~L 289 (300)
+...|.||.. ||.-.-=.+--+....| ..+.|-++...+| +|||||. +|.|..
T Consensus 586 ~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G--~KMSKSl-GNvIdP 641 (961)
T PRK13804 586 LYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKG--EKMSKSL-GNTVSP 641 (961)
T ss_pred EEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCC--CCccCCC-CCcCCH
Confidence 4578999975 44332111111222233 3445666665565 8999999 888854
No 83
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=82.64 E-value=0.96 Score=48.79 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=31.4
Q ss_pred eeccccCchh-HHHHHHHHHHH-hCCCCCc-eeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDP-YFRMTRDVAPR-IGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~-~~~l~rdla~r-~~~~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+...|.||-. |+......+-- ++.+.|. .+.+-++...+ |+|||||. +|.|+..|
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~--G~KMSKSk-GNvI~p~d 624 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEK--GRKMSKSL-GNVVDPLK 624 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCC--CCCcCCCC-CCCCCHHH
Confidence 5578999966 33333222222 2433332 23355554445 48999999 88887654
No 84
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=82.44 E-value=0.84 Score=43.33 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=30.4
Q ss_pred ccccCchhHHHHH-HHHHHHhCCCCCceee-cccccCCCCCCCccccCCCCCeeecCC
Q 022242 236 PCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 236 p~G~DQd~~~~l~-rdla~r~~~~kp~~i~-~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
.+|.|+-.+.-+. --+..-.+.+.|..++ +-++ .+. |+|||||. +|.|++.|
T Consensus 240 ~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~-~~~--g~kmSkS~-gn~i~~~~ 293 (319)
T cd00814 240 FIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYL-TVE--GKKMSKSR-GNVVDPDD 293 (319)
T ss_pred EEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeE-EEC--CeeecccC-CcccCHHH
Confidence 5899987754322 1122224454443333 3333 344 48999998 89999855
No 85
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=82.17 E-value=1.2 Score=48.47 Aligned_cols=52 Identities=27% Similarity=0.244 Sum_probs=31.4
Q ss_pred eeccccCchh-HH--HHHHHHHHHhCCCCCc-eeecccccCCCCCCCccccCCCCCeeec
Q 022242 234 LIPCAIDQDP-YF--RMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYV 289 (300)
Q Consensus 234 lvp~G~DQd~-~~--~l~rdla~r~~~~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L 289 (300)
+...|.||.. |+ .+-..++- .|.+.+. .+.|-++...+| +|||||. +|.|..
T Consensus 548 l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSl-GNvIdP 603 (912)
T PRK05743 548 LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSL-GNVIDP 603 (912)
T ss_pred EEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCC-CCcCCH
Confidence 4578999864 32 23344443 4543332 234556655565 8999999 787753
No 86
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=81.52 E-value=5.2 Score=41.81 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=41.5
Q ss_pred CceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEE-Eeccccc--cc---c-CCCHHH-HHHHHHHHHHH
Q 022242 84 EKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MW---K-NLSVEE-SQRLARENAKD 151 (300)
Q Consensus 84 ~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~-I~D~~~~--~~---r-~l~~e~-i~~~~~~~~~~ 151 (300)
++++|-|.+- |+| .+||||+.+.+ .+.++++..|..+... =+|.|.. .. + ..+.++ +.++.....++
T Consensus 4 ~~~~it~~~py~ng-~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~ 82 (648)
T PRK12267 4 KTFYITTPIYYPNG-KPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKEL 82 (648)
T ss_pred CCEEEeeCCCCCCC-CcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455544443 456 89999987654 3444555556555544 4455531 11 1 145544 34444556666
Q ss_pred HHHcCCCCC
Q 022242 152 IIACGFDVT 160 (300)
Q Consensus 152 iiA~G~dp~ 160 (300)
+.++|++.+
T Consensus 83 l~~lgI~~D 91 (648)
T PRK12267 83 WKKLDISYD 91 (648)
T ss_pred HHHcCCCCC
Confidence 777887554
No 87
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=81.46 E-value=1.1 Score=46.31 Aligned_cols=54 Identities=24% Similarity=0.216 Sum_probs=28.8
Q ss_pred eeccccCchh-HHHHHHHHHHHhCCCCC--ceeecccccCCCCCCCccccCCCCCeeecC
Q 022242 234 LIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 234 lvp~G~DQd~-~~~l~rdla~r~~~~kp--~~i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
+..-|.||-. |+....-+..-+....| ..+.+-++...+| +|||||. +|.|.+.
T Consensus 517 ~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~-GNvi~p~ 573 (601)
T PF00133_consen 517 LYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSK-GNVIDPE 573 (601)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTT-TB--BHH
T ss_pred cccCCccchhhHHHHhHhhccccccCCchheeeecccccccce--eecccCC-CcccCHH
Confidence 3467888865 44333333333433344 3445666666665 9999998 7887643
No 88
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.42 E-value=1.8 Score=44.78 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=49.2
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCCc-eeecccccCCC-CCCCccccCCCCCeeecCCCHHHHhc
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQ-GETGKMSASDPNSAIYVTDSAKAIKN 298 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~kp~-~i~~~~lp~L~-g~g~KMSkS~p~saI~L~D~p~~i~~ 298 (300)
++--+|.||..|+.-.+-+++.+++..+. .+.+..+.... |.+.||||-. ++.|.|.|=-+++.+
T Consensus 337 ~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~-G~~vtl~dllde~~e 403 (577)
T COG0018 337 LIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRA-GNVVTLDDLLDEAGE 403 (577)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccC-CceEEHHHHHHHHHH
Confidence 55569999999999999999999997663 33333333333 3568999998 899999987777763
No 89
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=80.93 E-value=2.7 Score=39.87 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=38.2
Q ss_pred EEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEE-EEecccc--ccc---cC-CCHHH-HHHHHHHHHHHHHH
Q 022242 87 YLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVI-QLTDDEK--CMW---KN-LSVEE-SQRLARENAKDIIA 154 (300)
Q Consensus 87 ~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I-~I~D~~~--~~~---r~-l~~e~-i~~~~~~~~~~iiA 154 (300)
+|.++.= |+| .+||||+.+.+ ++.++++.-|..|.. .=.|++. ... +. .+..+ ++++..+..+++.+
T Consensus 3 ~it~~~Py~ng-~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~ 81 (314)
T cd00812 3 YILVMFPYPSG-ALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKR 81 (314)
T ss_pred EEecCCCCCCC-CccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444433 455 89999988654 333344444544433 3334442 111 11 44444 34444566667778
Q ss_pred cCCCCC
Q 022242 155 CGFDVT 160 (300)
Q Consensus 155 ~G~dp~ 160 (300)
+|++++
T Consensus 82 lgi~~d 87 (314)
T cd00812 82 MGFSYD 87 (314)
T ss_pred hcccee
Confidence 888664
No 90
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=80.60 E-value=6.2 Score=37.55 Aligned_cols=74 Identities=23% Similarity=0.326 Sum_probs=40.9
Q ss_pred CceEEE-EecCCCCCCcchhhhHHHH---HHH-HHHHhCCCeEEE--EEeccc-ccccc----CCCHHHH-HHHHHHHHH
Q 022242 84 EKFYLY-TGRGPSSEALHLGHLVPFM---FTK-YLQDAFKVPLVI--QLTDDE-KCMWK----NLSVEES-QRLARENAK 150 (300)
Q Consensus 84 ~~~~vy-tG~~PTg~~lHlGhli~~~---~~~-~lQ~~~~~~v~I--~I~D~~-~~~~r----~l~~e~i-~~~~~~~~~ 150 (300)
+.+.+| ||-=+-. ..||||+-+++ .++ +|+. .|..|.- -|+|.. |.+.+ ..++.++ +++..+..+
T Consensus 7 ~~v~~Y~CGPTVYd-~~HiGhaR~~v~~D~l~R~L~~-~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 7 GKVRMYVCGPTVYD-YAHIGHARTYVFFDVLRRYLEY-LGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp TEEEEEEEEEBTTS---BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCCC-CCCCcceeeeeeHHHHHHHHHH-cCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 345555 5655554 89999977654 343 4655 5765544 499987 54442 2666664 445567777
Q ss_pred HHHHcCCCC
Q 022242 151 DIIACGFDV 159 (300)
Q Consensus 151 ~iiA~G~dp 159 (300)
++.++|+.+
T Consensus 85 dm~~Lnv~~ 93 (300)
T PF01406_consen 85 DMKALNVLP 93 (300)
T ss_dssp HHHHTT---
T ss_pred HHHHcCCCC
Confidence 888888865
No 91
>PLN02286 arginine-tRNA ligase
Probab=80.39 E-value=2 Score=44.46 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=43.7
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCC------ceeecccccCCCCCCCccccCCCCCeeecCCCHHH
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKP------ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~kp------~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~ 295 (300)
++--+|.||..|+.-...+++.+|+.++ .++..-++-++.| +||||-. ++.|+|.|=-++
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~-G~~v~L~dllde 395 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRS-GEVVRLVDLLDE 395 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCC-CCeeEHHHHHHH
Confidence 4446899999999999999999997522 1222345644554 7999887 899999874443
No 92
>PLN02610 probable methionyl-tRNA synthetase
Probab=79.97 E-value=6.7 Score=42.26 Aligned_cols=76 Identities=8% Similarity=-0.018 Sum_probs=45.5
Q ss_pred CceEEEEecC-CCCCCcchhhhHHH----HHHHHHHHhCCCeEEEEEecc-cccc--c---c-CCCHHH-HHHHHHHHHH
Q 022242 84 EKFYLYTGRG-PSSEALHLGHLVPF----MFTKYLQDAFKVPLVIQLTDD-EKCM--W---K-NLSVEE-SQRLARENAK 150 (300)
Q Consensus 84 ~~~~vytG~~-PTg~~lHlGhli~~----~~~~~lQ~~~~~~v~I~I~D~-~~~~--~---r-~l~~e~-i~~~~~~~~~ 150 (300)
++++|-|.+- |+| .+||||+.+. ....++++.-|..+..+.|.+ |..- . + ..+..+ +.++.....+
T Consensus 17 ~~~~ITt~~pY~Ng-~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~ 95 (801)
T PLN02610 17 RNILITSALPYVNN-VPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKE 95 (801)
T ss_pred CCEEEeCCCCCCCC-CcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3566766664 455 8999998842 345567776677777766554 4321 1 1 245544 4444455555
Q ss_pred HHHHcCCCCC
Q 022242 151 DIIACGFDVT 160 (300)
Q Consensus 151 ~iiA~G~dp~ 160 (300)
.+.++|++.+
T Consensus 96 ~~~~l~i~~D 105 (801)
T PLN02610 96 VYDWFDISFD 105 (801)
T ss_pred HHHHcCCccc
Confidence 6677777654
No 93
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=79.89 E-value=1.4 Score=30.30 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=26.3
Q ss_pred cccHHHHHHHhCCCCCCHHHHHHHHHhhCCC
Q 022242 27 KIDYDKLIDKFGCQRLDQSLVDRVQRLTGRP 57 (300)
Q Consensus 27 ~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~ 57 (300)
.||+++++. ||-+||+++...-|..+.|++
T Consensus 17 kvdWd~wvS-f~GrPltdevK~a~k~i~~~~ 46 (49)
T PF06543_consen 17 KVDWDKWVS-FDGRPLTDEVKEAMKLIFGKR 46 (49)
T ss_pred ccchHHhee-eCCeeCCHHHHHHHHHHHhhh
Confidence 599999988 999999999888888887764
No 94
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=79.71 E-value=1.6 Score=44.32 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=31.5
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCCcee-ecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~~~~l~-rdla~r~~~~kp~~i-~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+..+|.|...+.-+. .-+..-++.+.|..+ .+-++. +. |+|||||. +|.|++.|
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~-~~--g~KmSKS~-Gn~i~~~d 340 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLT-VE--GGKMSKSL-GNVVDPSD 340 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEE-EC--CceecccC-CceecHHH
Confidence 457999988753332 112222344445333 344432 33 48999999 89998754
No 95
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=79.30 E-value=1.6 Score=46.67 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=30.2
Q ss_pred eeccccCchhHHHHHHHHHHH--hCCCCC--ceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~~~~l~rdla~r--~~~~kp--~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+...|.||-. +.+.+-++.. +....| ..+.+-++...+| +|||||. +|.|++.|
T Consensus 489 ~~~~G~Di~~-~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~-GN~i~p~~ 546 (800)
T PRK13208 489 LRPQGHDIIR-TWLFYTILRAYLLTGKLPWKNIMISGMVLDPDG--KKMSKSK-GNVVTPEE 546 (800)
T ss_pred EEEeecchhh-hHHHHHHHHHHHhcCCCCcceEEEeeEEECCCC--CCCCCCC-CCCCCHHH
Confidence 3457888764 2333333222 122234 2334555555555 8999999 88887643
No 96
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=78.97 E-value=0.89 Score=44.66 Aligned_cols=53 Identities=26% Similarity=0.295 Sum_probs=31.4
Q ss_pred eeeccccCchhHHHHH---HHHHHHhCCCCCceee-cccccCCCCCCCccccCCCCCeeecCC
Q 022242 233 CLIPCAIDQDPYFRMT---RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 233 clvp~G~DQd~~~~l~---rdla~r~~~~kp~~i~-~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
++-.+|.|--++.-+- --+| .+.+.|..+. +-++. +.| +|||||. +++||..|
T Consensus 284 ~v~~iGkDi~~fH~i~~pa~l~a--~~~~lP~~i~~~~~~~-~~g--~K~SkS~-gn~i~~~~ 340 (391)
T PF09334_consen 284 IVHFIGKDIIRFHAIYWPAMLLA--AGLPLPRRIVVHGFLT-LDG--EKMSKSR-GNVIWPDD 340 (391)
T ss_dssp EEEEEEGGGHHHHHTHHHHHHHH--CTB---SEEEEE--EE-ETT--CCEETTT-TESSBHHH
T ss_pred EEEEEccchhHHHHHHhHHHHhc--ccCCCCCEEEeeeeEE-ECC--eeccccC-CcccCHHH
Confidence 4446899866665544 2333 6666665543 44443 565 8999999 89999765
No 97
>PLN02943 aminoacyl-tRNA ligase
Probab=77.87 E-value=11 Score=41.50 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=38.7
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEe-cCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEeccc
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG-~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
.+.+.|+|....+ .++++|.+.+| =-+|| .||+||.+... ++.++++.-|..+....|=||
T Consensus 72 ~W~~~~~f~~~~~--------~~~~~f~i~~pPP~~tG-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 136 (958)
T PLN02943 72 WWESQGYFKPNFD--------RGGDPFVIPMPPPNVTG-SLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDH 136 (958)
T ss_pred HHHHCCCcccCcc--------cCCCCEEEecCCCCCCC-chhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCc
Confidence 4556777755432 23466888887 56787 89999988543 344466655766666555444
No 98
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=77.47 E-value=2.1 Score=46.32 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=32.6
Q ss_pred eeccccCchhHHHHHHHHHHH--hCCCCC--ceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~~~~l~rdla~r--~~~~kp--~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+...|.||-.+. .+|-++.- +..+.| ..+.+-++...+| +|||||. +|.|++.|
T Consensus 481 ~~~~G~Dii~fw-~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKS~-GN~i~p~~ 538 (861)
T TIGR00422 481 LLVTGYDIIFFW-VARMIFRSLALTGQVPFKEVYIHGLVRDEQG--RKMSKSL-GNVIDPLD 538 (861)
T ss_pred eeecchhhhhHH-HHHHHHHHHHhcCCCchheEEEeeEEECCCC--CCCCcCC-CCCCCHHH
Confidence 456899976543 33333322 222345 3344666666665 8999999 88887644
No 99
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=77.43 E-value=12 Score=40.40 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=38.9
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEeccc
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
.+.+.|+|....+ +.+++|++++|.- +|| .||+||++... ++.++++.-|..|....|-+|
T Consensus 17 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 81 (861)
T TIGR00422 17 KWEKSGFFKPDGN--------SNKPPFCIDIPPPNVTG-SLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDH 81 (861)
T ss_pred HHHHCCCcccCcc--------cCCCeEEEEeCCCCCCC-CCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCc
Confidence 5566787755332 2346788888764 456 89999988553 344566666766666555444
No 100
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=77.02 E-value=2.3 Score=46.67 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=29.1
Q ss_pred eeccccCchh-HHHHHHHHHHH-hCCCCC-ceeecccccCCCCCCCccccCCCCCeeecC
Q 022242 234 LIPCAIDQDP-YFRMTRDVAPR-IGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 234 lvp~G~DQd~-~~~l~rdla~r-~~~~kp-~~i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
++..|.||-. |+-....+.-- ++.+.+ ..+.+-++...+ |+|||||. +|.|+..
T Consensus 548 ~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~--G~KMSKSl-GNvIdP~ 604 (975)
T PRK06039 548 FIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDED--GQKMSKSL-GNYVDPF 604 (975)
T ss_pred EEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCC--CCCcCCCC-CCcCCHH
Confidence 4467999875 32222222111 232221 223355554445 48999999 8888654
No 101
>PLN02563 aminoacyl-tRNA ligase
Probab=76.76 E-value=13 Score=40.87 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=46.5
Q ss_pred CCceEEEEecCCCCCC-cchhhhHHHH---HHHHHHHhCCCeEEEEEeccc-ccc-c----c-CCCH-HHHHHHHHHHHH
Q 022242 83 GEKFYLYTGRGPSSEA-LHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE-KCM-W----K-NLSV-EESQRLARENAK 150 (300)
Q Consensus 83 ~~~~~vytG~~PTg~~-lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~~-~~~-~----r-~l~~-e~i~~~~~~~~~ 150 (300)
++++++.+|+=...+. ||+||+.... .+.++++.-|..|...+|-++ ..- . + ..+. +-+.++...+.+
T Consensus 109 k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~ 188 (963)
T PLN02563 109 KPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRS 188 (963)
T ss_pred CCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHH
Confidence 4568999898433334 9999987543 445577766777777666443 321 1 1 1222 234455556666
Q ss_pred HHHHcCCCCC
Q 022242 151 DIIACGFDVT 160 (300)
Q Consensus 151 ~iiA~G~dp~ 160 (300)
++.++|+.-+
T Consensus 189 q~~~lG~s~D 198 (963)
T PLN02563 189 QLKSLGFSYD 198 (963)
T ss_pred HHHHhCcEee
Confidence 7778886544
No 102
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=76.57 E-value=1.7 Score=44.42 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=30.3
Q ss_pred eccccCchhHHHHH-HHHHHHhC--CCCCc-eeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 235 IPCAIDQDPYFRMT-RDVAPRIG--YHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 235 vp~G~DQd~~~~l~-rdla~r~~--~~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
...|.|+-++..+. --+..-.+ .+.|. .+.+-++. ++ |+|||||. +|.|++.|
T Consensus 291 ~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~--G~KMSKS~-GN~I~p~d 347 (556)
T PRK12268 291 YFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LE--GGKFSKSR-GWGIWVDD 347 (556)
T ss_pred EEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-EC--CeeeccCC-CcccCHHH
Confidence 35788887655432 22232233 33443 23344443 45 48999999 88888654
No 103
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=76.38 E-value=1.5 Score=45.78 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=30.4
Q ss_pred eccccCchhHHHHH-HHHHHHhCCCCCceee-cccccCCCCCCCccccCCCCCeeecCC
Q 022242 235 IPCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 235 vp~G~DQd~~~~l~-rdla~r~~~~kp~~i~-~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
...|.||-.+.-+- --+..-.+.+.|..+. +-++. +. |+|||||. +|.|+..|
T Consensus 258 ~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~-~e--g~KMSKS~-GN~i~p~d 312 (648)
T PRK12267 258 HLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWL-MK--DGKMSKSK-GNVVDPEE 312 (648)
T ss_pred EEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEE-EC--CceecccC-CcccCHHH
Confidence 35799998744322 0111123555554332 43433 34 48999999 89998754
No 104
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=76.34 E-value=5 Score=43.17 Aligned_cols=93 Identities=20% Similarity=0.192 Sum_probs=54.3
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEec-CCCCCCcchhhhHHH---HHHHHHHHhCCCeEEEEEeccccccc--
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQLTDDEKCMW-- 133 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~-~PTg~~lHlGhli~~---~~~~~lQ~~~~~~v~I~I~D~~~~~~-- 133 (300)
.+.+-++|..-.|.+. .++|++..=| -||| .||+||.... ..+.+++++-|-.|.--+| ++++=.
T Consensus 17 ~W~e~~~Fe~~~d~~~-------~~Kfyvl~mfPYpSG-~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPa 87 (814)
T COG0495 17 RWEEAKVFEADEDSDK-------PEKFYVLVMFPYPSG-ALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPA 87 (814)
T ss_pred HHHhcCCcccCCCCCC-------CCceEEEeCCCCCCC-CcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchH
Confidence 5666677765444221 0467777776 3787 7999996543 3556677776776666555 443210
Q ss_pred -----c-CCCH-HHHHHHHHHHHHHHHHcCCCCCc
Q 022242 134 -----K-NLSV-EESQRLARENAKDIIACGFDVTK 161 (300)
Q Consensus 134 -----r-~l~~-e~i~~~~~~~~~~iiA~G~dp~k 161 (300)
+ ..++ .=...|..+..+++.++||+-+-
T Consensus 88 e~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siDW 122 (814)
T COG0495 88 ENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDW 122 (814)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHhCCcccc
Confidence 0 1122 22344445566677888987663
No 105
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=75.89 E-value=8.1 Score=37.71 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=26.3
Q ss_pred ceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe-ccc
Q 022242 85 KFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDE 129 (300)
Q Consensus 85 ~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~-D~~ 129 (300)
++++.+|.- |+| .+||||+.+.. .+.++++.-|..|....| |.|
T Consensus 2 ~f~i~~~pPy~nG-~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~h 50 (382)
T cd00817 2 VFVIDTPPPNVTG-SLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHA 50 (382)
T ss_pred cEEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCC
Confidence 344555543 455 89999988654 344466665666655444 444
No 106
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=75.89 E-value=20 Score=31.44 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=40.1
Q ss_pred EEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEecccc-ccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 022242 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK-CMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIF 165 (300)
Q Consensus 88 vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~-~~~r~-l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~ 165 (300)
+|.|+- +.+|+||+..+. .-++. ++ .++|.|+.... ...++ .+.++-.++.+..+ ...|++.+++.|.
T Consensus 3 l~~GrF---~P~H~GHl~~i~--~a~~~-~~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~---~~~~~~~~rv~i~ 72 (181)
T cd02168 3 VYIGRF---QPFHNGHLAVVL--IALEK-AK-KVIILIGSARTARNIKNPWTSEEREVMIEAAL---SDAGADLARVHFR 72 (181)
T ss_pred EEeecc---CCCCHHHHHHHH--HHHHH-CC-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHH---hccCCCcceEEEE
Confidence 566654 569999976552 22444 45 67777765531 12122 67777665443332 3358888888775
Q ss_pred e
Q 022242 166 S 166 (300)
Q Consensus 166 ~ 166 (300)
.
T Consensus 73 p 73 (181)
T cd02168 73 P 73 (181)
T ss_pred e
Confidence 3
No 107
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.66 E-value=1.9 Score=46.92 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=33.8
Q ss_pred eeccccCch-hHHHHHHHHHHHhCCCCC--ceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhc
Q 022242 234 LIPCAIDQD-PYFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 298 (300)
Q Consensus 234 lvp~G~DQd-~~~~l~rdla~r~~~~kp--~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~ 298 (300)
++.=|.||. .||.-.--+.--+....| ..+.|-|+. ++.|.|||||. +|.|. |.+|-+
T Consensus 558 ~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvl--De~GrKMSKSl-GN~v~----P~~V~~ 618 (933)
T COG0060 558 FYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVL--DEKGRKMSKSL-GNVVD----PQDVID 618 (933)
T ss_pred EEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEE--CCCCCCccccC-CCcCC----HHHHHH
Confidence 445688885 577655333333333344 234455553 45569999999 77763 555543
No 108
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=75.49 E-value=7.2 Score=37.42 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=24.4
Q ss_pred ceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEE-Eecc
Q 022242 85 KFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDD 128 (300)
Q Consensus 85 ~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~-I~D~ 128 (300)
+|++.+|-= |+| .+||||+.+.. .+.++++..|..|... =.|.
T Consensus 2 ~f~i~~~pP~vnG-~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~ 49 (338)
T cd00818 2 EFVFHDGPPYANG-LPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDC 49 (338)
T ss_pred CeEEecCCCCCCC-CchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCC
Confidence 355555543 355 89999988653 3444555556555444 3344
No 109
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=75.31 E-value=7.4 Score=36.65 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=22.3
Q ss_pred eEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEE-EEeccc
Q 022242 86 FYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVI-QLTDDE 129 (300)
Q Consensus 86 ~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I-~I~D~~ 129 (300)
+++.+|.= |+| .+||||+.+.+ .+.++++.-|..|.. .=.|.+
T Consensus 2 ~~i~~~pP~~~g-~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~ 49 (312)
T cd00668 2 FYVTTPPPYANG-SLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTH 49 (312)
T ss_pred EEEecCCCCCCC-CcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCC
Confidence 34444433 465 89999988643 233333333544433 333554
No 110
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=75.01 E-value=2.5 Score=45.79 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=33.0
Q ss_pred eeccccCchhHHHHHHHHHHHh--CCCCC--ceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDPYFRMTRDVAPRI--GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~~~~l~rdla~r~--~~~kp--~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+...|.||-.+ =.+|-++.-+ ....| ..+.|-++...+| +|||||. ||.|+..|
T Consensus 476 ~~~~G~Dii~~-W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSl-GNvIdP~d 533 (874)
T PRK05729 476 VLVTGFDIIFF-WVARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSK-GNVIDPLD 533 (874)
T ss_pred cccccccccch-HHHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCC-CCCCCHHH
Confidence 34688887664 3334343332 22345 3345666766665 8999999 88887643
No 111
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=74.62 E-value=2.7 Score=46.55 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=31.8
Q ss_pred eccccCchhHHHHHHHHHHHh--CCCCC--ceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 235 IPCAIDQDPYFRMTRDVAPRI--GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 235 vp~G~DQd~~~~l~rdla~r~--~~~kp--~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
...|-||-.+ =.+|-++.-+ ....| .++.+-++..-+| +|||||. ||.|+..|
T Consensus 495 ~~~G~Dii~~-W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSk-GNvIdP~d 551 (1052)
T PRK14900 495 METGHDIIFF-WVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTK-GNVIDPLV 551 (1052)
T ss_pred hcccccHHhH-HHHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCC-CCCCCHHH
Confidence 3578887643 3344444333 22345 2344666655554 8999999 88987654
No 112
>PLN02843 isoleucyl-tRNA synthetase
Probab=74.09 E-value=2.9 Score=45.97 Aligned_cols=53 Identities=21% Similarity=0.108 Sum_probs=30.1
Q ss_pred eeccccCchh--HHHHH-HHHHHHhCCCCC-ceeecccccCCCCCCCccccCCCCCeeecC
Q 022242 234 LIPCAIDQDP--YFRMT-RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 234 lvp~G~DQd~--~~~l~-rdla~r~~~~kp-~~i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
+...|.||.. +..+. .-++ -.+.+.+ ..+.|.++..-+ |+|||||. +|.|...
T Consensus 567 l~~eG~Di~rgWf~s~l~~~~~-~~g~~Pfk~v~~HG~vld~~--G~KMSKSl-GNvI~p~ 623 (974)
T PLN02843 567 LYLEGSDQHRGWFQSSLLTSVA-TKGKAPYKSVLTHGFVLDEK--GFKMSKSL-GNVVDPR 623 (974)
T ss_pred eeeeeccccchHHHHHHHHHHH-hcCCCccceEEEeccEECCC--CCCcCCCC-CCcCCHH
Confidence 4568999987 33332 2222 1333222 233466665555 49999999 7877543
No 113
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=73.60 E-value=2.9 Score=41.14 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=39.6
Q ss_pred EEecCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEE--Eeccc-ccccc---C-CCHHHH-HHHHHHHHHHHHHcCC
Q 022242 89 YTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDE-KCMWK---N-LSVEES-QRLARENAKDIIACGF 157 (300)
Q Consensus 89 ytG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~--I~D~~-~~~~r---~-l~~e~i-~~~~~~~~~~iiA~G~ 157 (300)
.||-=|-+ .+||||+.+++ .++++++..|..|... ++|-. |...+ . .+++++ +++.....+++.++|+
T Consensus 14 vCGpTvY~-~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni 92 (384)
T PRK12418 14 VCGITPYD-ATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRV 92 (384)
T ss_pred ecCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 35555565 89999977644 4444444456555443 44433 33322 2 666664 4455667778888886
No 114
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=72.53 E-value=14 Score=37.60 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=43.3
Q ss_pred ceEEE-EecCCCCCCcchhhhHHH---HHHHHHHHhCCCeEEEE--Eecc----------c-cccc---cC-CCHHH-HH
Q 022242 85 KFYLY-TGRGPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQ--LTDD----------E-KCMW---KN-LSVEE-SQ 142 (300)
Q Consensus 85 ~~~vy-tG~~PTg~~lHlGhli~~---~~~~~lQ~~~~~~v~I~--I~D~----------~-~~~~---r~-l~~e~-i~ 142 (300)
.+.+| ||-=+-+ .+||||+.++ ..++++.+..|..|..+ |+|. . +.+. +. .++.+ +.
T Consensus 23 ~v~mYvCGpTvy~-~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~ 101 (490)
T PRK14536 23 HVRLYGCGPTVYN-YAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAA 101 (490)
T ss_pred ceEEEeeCCccCC-CcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHH
Confidence 45555 4544444 8999997654 44444444456444433 6776 2 3222 11 55544 45
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 022242 143 RLARENAKDIIACGFDVT 160 (300)
Q Consensus 143 ~~~~~~~~~iiA~G~dp~ 160 (300)
++..+..+++.++|+.+.
T Consensus 102 ~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 102 HYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 555677888888998653
No 115
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=71.97 E-value=13 Score=36.62 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=17.0
Q ss_pred ecccccCCCCCCCccccCCCCCeeecCC
Q 022242 264 ESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 264 ~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
.+..+.... |+|||||. +|.|.+.+
T Consensus 250 ~H~g~l~~~--G~KMSKSl-GN~i~~~e 274 (384)
T PRK12418 250 VHAGMIGLD--GEKMSKSR-GNLVFVSR 274 (384)
T ss_pred EECCEECCC--CCcccCcC-CCcCCHHH
Confidence 343344455 48999999 88887753
No 116
>PLN02943 aminoacyl-tRNA ligase
Probab=71.53 E-value=2.9 Score=45.85 Aligned_cols=54 Identities=22% Similarity=0.160 Sum_probs=32.9
Q ss_pred eeccccCchhHHHHHHHHHHH--hCCCCC-c-eeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDPYFRMTRDVAPR--IGYHKP-A-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~~~~l~rdla~r--~~~~kp-~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+...|.||-. +=++|-++.- +....| . .+.|.++...+| +|||||. +|.|+..|
T Consensus 539 l~~~G~Dii~-fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~-GN~i~p~~ 596 (958)
T PLN02943 539 VLETGHDILF-FWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTL-GNVIDPLD 596 (958)
T ss_pred EEEEeehHHH-HHHHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcC-CCCCCHHH
Confidence 3457999873 4445544432 222345 2 344666666665 8999999 88887644
No 117
>PLN02946 cysteine-tRNA ligase
Probab=70.91 E-value=12 Score=38.62 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=42.5
Q ss_pred ceEEE-EecCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEE--Eeccc-ccccc----CCCHHH-HHHHHHHHHHHH
Q 022242 85 KFYLY-TGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEE-SQRLARENAKDI 152 (300)
Q Consensus 85 ~~~vy-tG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~--I~D~~-~~~~r----~l~~e~-i~~~~~~~~~~i 152 (300)
.+.+| ||-=+-+ .+||||+.+++ .++++.+..|..|... ++|-. |...+ ..++.+ ++++..+..+++
T Consensus 80 ~v~~Y~CGpTvYd-~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~ 158 (557)
T PLN02946 80 KVGMYVCGVTAYD-LSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDM 158 (557)
T ss_pred ceeEEEeCCccCC-CCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45555 4544445 89999976543 4444444456555443 45443 43332 266665 455556777788
Q ss_pred HHcCCC
Q 022242 153 IACGFD 158 (300)
Q Consensus 153 iA~G~d 158 (300)
.++|+.
T Consensus 159 ~~LnI~ 164 (557)
T PLN02946 159 AYLHCL 164 (557)
T ss_pred HHCCCC
Confidence 888885
No 118
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=70.58 E-value=14 Score=36.74 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=41.5
Q ss_pred EEEecCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEE--Eeccc-ccccc---C-CCHHHH-HHHHHHHHHHHHHcC
Q 022242 88 LYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDE-KCMWK---N-LSVEES-QRLARENAKDIIACG 156 (300)
Q Consensus 88 vytG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~--I~D~~-~~~~r---~-l~~e~i-~~~~~~~~~~iiA~G 156 (300)
..||-=|-+ .+||||+.+++ .+.++++..|..|..+ ++|-. |...+ . .+++++ .++..+..+++.++|
T Consensus 40 YvCGpTvY~-~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Ln 118 (411)
T TIGR03447 40 YVCGITPYD-ATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALR 118 (411)
T ss_pred EEeCCccCC-CcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 446777775 89999977654 4444444456665554 33332 33321 2 666654 445566777788888
Q ss_pred CC
Q 022242 157 FD 158 (300)
Q Consensus 157 ~d 158 (300)
+.
T Consensus 119 i~ 120 (411)
T TIGR03447 119 VL 120 (411)
T ss_pred CC
Confidence 64
No 119
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=69.54 E-value=3.7 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=16.6
Q ss_pred eecccccCCCCCCCccccCCCCCeeecC
Q 022242 263 IESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 263 i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
+.+-++.. + |+|||||. +|.|++.
T Consensus 566 ~~hG~vl~-~--G~KMSKS~-GNvVdp~ 589 (897)
T PRK12300 566 VVNGFVLL-E--GKKMSKSK-GNVIPLR 589 (897)
T ss_pred EEcceEEE-C--CccccCcC-CCCCCHH
Confidence 34455543 4 58999999 8888754
No 120
>PLN02224 methionine-tRNA ligase
Probab=69.00 E-value=3.6 Score=42.96 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=30.1
Q ss_pred ccccCchhHHHHH-HHHHHHhCCCCCceee-cccccCCCCCCCccccCCCCCeeecCC
Q 022242 236 PCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 236 p~G~DQd~~~~l~-rdla~r~~~~kp~~i~-~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
.+|.|--++.-+. --..--.+.+-|..+. +-++ .+. |+|||||. +|.|++.|
T Consensus 326 ~iGKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l-~~e--G~KMSKS~-GN~i~p~e 379 (616)
T PLN02224 326 LIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFL-TKD--GMKMGKSL-GNTLEPFE 379 (616)
T ss_pred EEeecccccHHHHHHHHHHHCCCCCCcEEEecccE-ecC--CccccccC-CccCCHHH
Confidence 4788876643333 1111224555554433 3443 355 48999999 89998754
No 121
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=68.69 E-value=20 Score=38.98 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=37.3
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEeccc
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
.+.+.|+|....+ ++++|.+.+|.= +|| .||+||.+... ++.++++.-|..+...-|-+|
T Consensus 21 ~W~~~~~f~~~~~---------~~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 84 (874)
T PRK05729 21 KWEEKGYFKPDDN---------SKKPFSIVIPPPNVTG-SLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDH 84 (874)
T ss_pred HHHHCCCcccCcC---------CCCCEEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCc
Confidence 5566777765321 345677777654 466 89999988553 344566665666655555454
No 122
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=68.64 E-value=4.8 Score=42.36 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=31.0
Q ss_pred ccccCchhHHHHH---HHHHHHhCCCCCceee-cccccCCCCCCCccccCCCCCeeecCC
Q 022242 236 PCAIDQDPYFRMT---RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 236 p~G~DQd~~~~l~---rdla~r~~~~kp~~i~-~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
.+|.|-..+.-+. .=++ .+++.|..+. +-++.. .| +|||||. +|.|++.|
T Consensus 289 ~iGkDi~~fH~i~wpa~l~a--~g~~lP~~v~~hg~v~~-~G--~KMSKS~-GNvV~p~d 342 (673)
T PRK00133 289 FIGKDIIYFHTLFWPAMLEG--AGYRLPTNVFAHGFLTV-EG--AKMSKSR-GTFIWART 342 (673)
T ss_pred EEeecchhHHHHHHHHHHHh--CCCCCCCEEeeeccEEe-cC--CcccccC-CcccCHHH
Confidence 4888876654432 3233 4565564433 445543 54 8999999 88988654
No 123
>PLN02959 aminoacyl-tRNA ligase
Probab=68.56 E-value=4.6 Score=44.91 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.1
Q ss_pred CCccccCCCCCeeecCC
Q 022242 275 TGKMSASDPNSAIYVTD 291 (300)
Q Consensus 275 g~KMSkS~p~saI~L~D 291 (300)
|+|||||. +|.|.+.|
T Consensus 716 G~KMSKSk-GNvI~p~d 731 (1084)
T PLN02959 716 SEKMSKST-GNFLTLRQ 731 (1084)
T ss_pred CcCccccC-CCcCCHHH
Confidence 49999999 88887644
No 124
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=68.12 E-value=4.2 Score=40.35 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=17.2
Q ss_pred eecccccCCCCCCCccccCCCCCeeecC
Q 022242 263 IESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 263 i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
..+..+....| +|||||. +|.|.+.
T Consensus 276 w~H~g~l~~~G--~KMSKSl-GN~i~~~ 300 (411)
T TIGR03447 276 YVHAGMIGLDG--EKMSKSL-GNLVFVS 300 (411)
T ss_pred EEECCEECcCC--CCccCcC-CCCCCHH
Confidence 34444445555 8999999 7887764
No 125
>PLN02882 aminoacyl-tRNA ligase
Probab=67.92 E-value=4.5 Score=45.32 Aligned_cols=53 Identities=21% Similarity=0.047 Sum_probs=29.1
Q ss_pred eeeccccCchhHH-H--HHHHHHHHhCCCCCc-eeecccccCCCCCCCccccCCCCCeeec
Q 022242 233 CLIPCAIDQDPYF-R--MTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYV 289 (300)
Q Consensus 233 clvp~G~DQd~~~-~--l~rdla~r~~~~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L 289 (300)
.++.-|.||-... - |..-++ -++.+.+. .+.+-++..=+ |+|||||. +|.|..
T Consensus 569 D~i~eG~Dq~RgWf~~ll~~s~~-l~~~~pfk~VivhG~vlde~--G~KMSKSl-GNvIdP 625 (1159)
T PLN02882 569 DFVAEGLDQTRGWFYTLMVLSTA-LFDKPAFKNLICNGLVLAED--GKKMSKSL-KNYPDP 625 (1159)
T ss_pred eEEEEecchhhhHHHHHHHHHHH-hcCCCCcceeEEccEEECCC--CCCcccCC-CCCCCH
Confidence 3557899987643 2 222222 13443332 23344443333 59999999 888753
No 126
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=67.25 E-value=13 Score=39.17 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=38.7
Q ss_pred CCcchhhhH---HHHHHHH-HHHhCCCeEEEE--Eeccc-ccccc---C-CC-HHH-HHHHHHHHHHHHHHcCCCC
Q 022242 97 EALHLGHLV---PFMFTKY-LQDAFKVPLVIQ--LTDDE-KCMWK---N-LS-VEE-SQRLARENAKDIIACGFDV 159 (300)
Q Consensus 97 ~~lHlGhli---~~~~~~~-lQ~~~~~~v~I~--I~D~~-~~~~r---~-l~-~e~-i~~~~~~~~~~iiA~G~dp 159 (300)
+..||||.- .+..+++ |++.+|..|..+ |+|-. |...+ . ++ +.+ ++.+..+..+++.++|+.+
T Consensus 72 d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~~ 147 (651)
T PTZ00399 72 DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVRP 147 (651)
T ss_pred CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999955 4445544 664667555443 66654 44332 2 55 544 4556667788888888865
No 127
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=66.68 E-value=2.1 Score=41.41 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=38.3
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCC-C-Cceeecccc-cCCCCCCC-ccccCCCCCeeecCCCHH
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYH-K-PALIESSFF-PALQGETG-KMSASDPNSAIYVTDSAK 294 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~-k-p~~i~~~~l-p~L~g~g~-KMSkS~p~saI~L~D~p~ 294 (300)
++--+|.||..|+.-...+++++|+. + ..+.|-.+. -.+.+ |+ |||+.. ++.|.|+|=-+
T Consensus 241 ~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~-gk~~mstR~-G~~i~l~dlld 304 (354)
T PF00750_consen 241 IIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKD-GKVKMSTRK-GNVITLDDLLD 304 (354)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETT-BEESS-TTT-TSSTBHHHHHH
T ss_pred EEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCC-CCccccCCC-CCceEHHHHHH
Confidence 44469999999999999999999972 1 122222221 11222 34 799998 88999876433
No 128
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=65.69 E-value=2.2 Score=40.53 Aligned_cols=50 Identities=22% Similarity=0.161 Sum_probs=21.0
Q ss_pred cccCc-hhHHHHHHHHHHHhCCCCCce---eecccccCCCCCCCccccCCCCCeeecCC
Q 022242 237 CAIDQ-DPYFRMTRDVAPRIGYHKPAL---IESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 237 ~G~DQ-d~~~~l~rdla~r~~~~kp~~---i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+|+|- -||.+=-+-.++-... +|.+ +|+-+|. +. |+|||||. +|.|.+.|
T Consensus 212 GG~DL~FPHHENEiAqs~a~~g-~~~a~~W~H~g~l~-~~--g~KMSKSl-gN~~~i~d 265 (300)
T PF01406_consen 212 GGIDLIFPHHENEIAQSEAATG-KPFANYWMHNGHLN-VD--GEKMSKSL-GNFITIRD 265 (300)
T ss_dssp EEGGGTTTHHHHHHHHHHHHHS-S-SEEEEEEE--EE-ET--TCE--TTT-T---BHHH
T ss_pred cccccCCCCccchHHHHHHhhC-chHHHHHHHHHHHh-hc--CccccccC-CCEEEHHH
Confidence 44442 3555444333433333 3322 3444432 34 48999998 88888765
No 129
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=65.29 E-value=9 Score=41.12 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=37.1
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEec-CCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEeccc
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~-~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
.+.+.+++....+ .+++++++.+|. -|+| .|||||+.... ++.++++.-|..|....|-++
T Consensus 22 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~ 86 (800)
T PRK13208 22 IWEEEGTYKFDPD--------ERKPVYSIDTPPPTVSG-SLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDD 86 (800)
T ss_pred HHHHCCCcccccc--------cCCCcEEEecCcCCCCC-CccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCC
Confidence 4555677654321 124567777744 4666 89999988654 344466665766666555443
No 130
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=64.84 E-value=23 Score=36.02 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=42.0
Q ss_pred ceEEEEecCCCC-CCcchhhhHHHH---HHHHHHHhCCCeEEE--EEecc----------c-ccccc---C-CCHHH-HH
Q 022242 85 KFYLYTGRGPSS-EALHLGHLVPFM---FTKYLQDAFKVPLVI--QLTDD----------E-KCMWK---N-LSVEE-SQ 142 (300)
Q Consensus 85 ~~~vytG~~PTg-~~lHlGhli~~~---~~~~lQ~~~~~~v~I--~I~D~----------~-~~~~r---~-l~~e~-i~ 142 (300)
.+.+|+ .+||- +.+||||+.+++ .++++.+..|..|.. -|||. . |...+ . .++.+ +.
T Consensus 21 ~v~mY~-CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 21 DVKVYA-CGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred ceEEEe-CCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 344553 44442 479999976543 444433444544443 36666 2 33321 2 56655 45
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 022242 143 RLARENAKDIIACGFDVT 160 (300)
Q Consensus 143 ~~~~~~~~~iiA~G~dp~ 160 (300)
++.....+++.++|+.+.
T Consensus 100 ~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 555667778888888654
No 131
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=64.00 E-value=4.5 Score=40.72 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=27.0
Q ss_pred ccccCc-hhHHHHHHHHHHH-hCCCCCce-eecccccCCCCCCCccccCCCCCeeecCC
Q 022242 236 PCAIDQ-DPYFRMTRDVAPR-IGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 236 p~G~DQ-d~~~~l~rdla~r-~~~~kp~~-i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
.+|.|. -||+.--+-...- .|.+.+.. +|+-++ .+.| +|||||. +|.|.+.|
T Consensus 224 ~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v-~~~g--~KMSKS~-GN~i~~~d 278 (465)
T TIGR00435 224 GGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFL-MIDN--EKMSKSL-GNFFTVRD 278 (465)
T ss_pred ccccccccchHHHHHHHHHHhcCCCCCcEEEEeeEE-EecC--ccccccC-CCcCCHHH
Confidence 567764 2344322222222 34322222 344433 3555 8999999 88887654
No 132
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=63.74 E-value=19 Score=38.06 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=43.7
Q ss_pred ceEEE-EecCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEE--Eeccc-ccccc----CCCHHHH-HHHHHHHHHHH
Q 022242 85 KFYLY-TGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKDI 152 (300)
Q Consensus 85 ~~~vy-tG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~--I~D~~-~~~~r----~l~~e~i-~~~~~~~~~~i 152 (300)
.+.+| ||-=+- +.+||||+.+++ .++++.+..|..|..+ ++|-. |...+ ..++.++ .++..+..+++
T Consensus 248 ~V~mYvCGPTVY-d~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~ 326 (699)
T PRK14535 248 NVRMYVCGMTVY-DYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDA 326 (699)
T ss_pred ceEEEecCCcCC-CCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45555 344444 489999976543 4444444456555544 45443 43332 2666654 55556777888
Q ss_pred HHcCCCCC
Q 022242 153 IACGFDVT 160 (300)
Q Consensus 153 iA~G~dp~ 160 (300)
.++|+.+.
T Consensus 327 ~~LnI~~p 334 (699)
T PRK14535 327 DALGVLRP 334 (699)
T ss_pred HHcCCCCC
Confidence 88888654
No 133
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.25 E-value=18 Score=38.18 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=38.7
Q ss_pred hhhhhcCcccccCCHHHHHHHHhcCCceEEEEecC-CCCCCcchhhhH---HHHHHHHHHHhCCCeEEEEEe
Q 022242 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLV---PFMFTKYLQDAFKVPLVIQLT 126 (300)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~-PTg~~lHlGhli---~~~~~~~lQ~~~~~~v~I~I~ 126 (300)
+....+|..+.. | .-.++++ ||.+=|- ||| .||+||.. -...+.+||+.-|-.|+=-||
T Consensus 40 ~~~~~~~~~~~~-~------~d~sk~K-YiLsMFPYPSG-~LHiGHvRVYTIsD~laRf~rm~GynVihPMG 102 (876)
T KOG0435|consen 40 KQYLKDGFPFSK-D------SDKSKKK-YILSMFPYPSG-ALHIGHVRVYTISDILARFYRMKGYNVIHPMG 102 (876)
T ss_pred HHHHhcCCcccc-c------cccCCCc-eEEEecCCCCC-cccccceEEEEehHHHHHHHHhcCceeecCCc
Confidence 346677777764 1 1123344 9999884 898 79999954 334677888876766554455
No 134
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.05 E-value=5 Score=41.41 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=29.7
Q ss_pred ccccCchhHHHHH-HHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 236 PCAIDQDPYFRMT-RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 236 p~G~DQd~~~~l~-rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
.+|.|--+++-+- =-+.--.+.+.|..+.+.-.-.+. |+|||||. ++.||..+
T Consensus 293 fIGKDii~FHav~wPamL~~~~~~lP~~i~ahg~l~~~--G~KmSKSr-G~~V~~~~ 346 (558)
T COG0143 293 FIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLE--GQKMSKSR-GNVVDPDE 346 (558)
T ss_pred EeccccCcchhhHHHHHHHhCCCCCCCEEEeeeeEEEC--CccccccC-CcEEeHHH
Confidence 4677755555444 111122334456555432222344 48999999 89999655
No 135
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.41 E-value=16 Score=37.27 Aligned_cols=73 Identities=30% Similarity=0.466 Sum_probs=44.6
Q ss_pred CCceEEEEecCCCC-CCcchhh---hHHHHHHHH-HHHhCCCeEEEE--Eeccc-ccccc---------CCCHHHH-HHH
Q 022242 83 GEKFYLYTGRGPSS-EALHLGH---LVPFMFTKY-LQDAFKVPLVIQ--LTDDE-KCMWK---------NLSVEES-QRL 144 (300)
Q Consensus 83 ~~~~~vytG~~PTg-~~lHlGh---li~~~~~~~-lQ~~~~~~v~I~--I~D~~-~~~~r---------~l~~e~i-~~~ 144 (300)
+..+..|+ .+||. |+-|+|| |+.+.++++ |++-||..|... |+|-. |.+.| .++++++ ..+
T Consensus 53 ~~~v~wY~-CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~ 131 (586)
T KOG2007|consen 53 GNKVTWYI-CGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYY 131 (586)
T ss_pred CCeEEEEE-ecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHH
Confidence 44566665 56774 6889999 677777765 898888777654 78765 44432 1455554 223
Q ss_pred HHHHHHHHHHcC
Q 022242 145 ARENAKDIIACG 156 (300)
Q Consensus 145 ~~~~~~~iiA~G 156 (300)
-.+...|+.++.
T Consensus 132 e~eF~~DM~~Ln 143 (586)
T KOG2007|consen 132 EEEFLQDMAALN 143 (586)
T ss_pred HHHHHHHHHHhC
Confidence 334455555543
No 136
>PLN02381 valyl-tRNA synthetase
Probab=62.28 E-value=6.6 Score=43.61 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=31.7
Q ss_pred eeccccCchhHHHHHHHHHHH--hCCCCCc--eeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDPYFRMTRDVAPR--IGYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~~~~l~rdla~r--~~~~kp~--~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
++.-|.||.- +=.+|-++.- +....|. ++.+.++..-+| .|||||. +|.|...|
T Consensus 611 ~~~~G~Dii~-~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~-GNvIdP~~ 668 (1066)
T PLN02381 611 VLETGHDILF-FWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSL-GNVIDPLE 668 (1066)
T ss_pred eeeecchhhh-hHHHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCC-CCCCCHHH
Confidence 3457888753 2233333332 3334552 345666766665 8999999 88886433
No 137
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=61.91 E-value=5.2 Score=43.76 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=28.1
Q ss_pred eeccccCchhH-HH--HHHHHH--HHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDPY-FR--MTRDVA--PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~~-~~--l~rdla--~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+...|.||-++ .- +..-.| ++-..|+ ..+++-++.. + |+|||||. +|.|++.|
T Consensus 576 ~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk-~i~~~G~vl~-~--G~KMSKSl-GNvI~p~d 633 (938)
T TIGR00395 576 WRISGKDLIPNHLTFYIFHHVAIFPEKFWPR-GIVVNGYVML-E--GKKMSKSK-GNVLTLEQ 633 (938)
T ss_pred EEEEeeccccchHHHHHHHHHHcCCccccCc-EEEEeceEEe-C--CccccCcC-CCCCCHHH
Confidence 44689998652 22 212222 1111222 2334444432 4 58999999 88887654
No 138
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=61.47 E-value=18 Score=39.89 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=39.7
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEeccc
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
.+.+.|+|....+.+. -..+++|++.+|.= ||| .||+||.+... ++.++++.-|..|....|=++
T Consensus 40 ~W~~~~~f~~~~~~~~----~~~~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~ 108 (995)
T PTZ00419 40 WWEKSGFFKPAEDAKS----LNSGKKFVIVLPPPNVTG-YLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDH 108 (995)
T ss_pred HHHHCCCcccCccccc----cCCCCeEEEEeCCCCCCC-CCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 5566777765321110 02345688888774 566 89999988553 344577766777766666554
No 139
>PLN02610 probable methionyl-tRNA synthetase
Probab=60.83 E-value=5.3 Score=43.02 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=30.5
Q ss_pred ccccCchhHHHHH---HHHHHHhCCCCCceee-cccccCCCCCCCccccCCCCCeeecCC
Q 022242 236 PCAIDQDPYFRMT---RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 236 p~G~DQd~~~~l~---rdla~r~~~~kp~~i~-~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
.+|.|--.++-+. --++.-..++.|..+. +-++ .+. |+|||||. +|.||..+
T Consensus 306 fiGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l-~~e--G~KMSKS~-GNvV~p~~ 361 (801)
T PLN02610 306 FMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYL-NYE--GGKFSKSK-GVGVFGND 361 (801)
T ss_pred EEeeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCE-ecC--CceecCcC-CcccCHHH
Confidence 5888866666554 2222222233554444 3333 345 48999999 89998754
No 140
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=60.66 E-value=7.3 Score=42.89 Aligned_cols=53 Identities=25% Similarity=0.196 Sum_probs=30.6
Q ss_pred eeccccCchhHHHHHHHHHHHh--CCCCCc--eeecccccCCCCCCCccccCCCCCeeecC
Q 022242 234 LIPCAIDQDPYFRMTRDVAPRI--GYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 234 lvp~G~DQd~~~~l~rdla~r~--~~~kp~--~i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
+...|-||.. +=.+|-++.-+ ..+.|. .+.|.++-.-+| +|||||. ||.|...
T Consensus 541 ~~~~G~Dii~-~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSl-GNvIdP~ 597 (995)
T PTZ00419 541 LLETGSDILF-FWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSK-GNVIDPL 597 (995)
T ss_pred EEEechhHHh-HHHHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCC-CCcCChH
Confidence 4457887654 22233333332 224563 445666665554 8999998 8887543
No 141
>PLN02563 aminoacyl-tRNA ligase
Probab=60.28 E-value=4.9 Score=44.12 Aligned_cols=12 Identities=33% Similarity=0.349 Sum_probs=10.2
Q ss_pred ccccCCCCCeeec
Q 022242 277 KMSASDPNSAIYV 289 (300)
Q Consensus 277 KMSkS~p~saI~L 289 (300)
|||||. +|.|..
T Consensus 723 KMSKSK-GNvVdP 734 (963)
T PLN02563 723 KMSKSR-GNVVNP 734 (963)
T ss_pred cccccc-CCcCCH
Confidence 999999 888764
No 142
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.76 E-value=8 Score=41.88 Aligned_cols=51 Identities=22% Similarity=0.170 Sum_probs=30.3
Q ss_pred eeccccCchhHHHHHHHHHHHh--CCCCCce--eecccccCCCCCCCccccCCCCCeee
Q 022242 234 LIPCAIDQDPYFRMTRDVAPRI--GYHKPAL--IESSFFPALQGETGKMSASDPNSAIY 288 (300)
Q Consensus 234 lvp~G~DQd~~~~l~rdla~r~--~~~kp~~--i~~~~lp~L~g~g~KMSkS~p~saI~ 288 (300)
+.+.|-| -=++=.+|-+..-+ ....|.. ..|-++-.=+ |.|||||. ||.|-
T Consensus 481 llvtG~D-IIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~--G~KMSKS~-GNvID 535 (877)
T COG0525 481 LLVTGHD-IIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQ--GRKMSKSK-GNVID 535 (877)
T ss_pred cccccch-hhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCC--CCCCcccC-CCcCC
Confidence 4467888 55555566666553 3345631 1233444444 59999999 77774
No 143
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=57.47 E-value=9.4 Score=38.63 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=40.6
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecC
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
+.|..|.|+-..--.-+-+.+-||.+.|...|.++|.. +.|+||||+.. ++.+.
T Consensus 208 THviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~--~~g~kLSKr~~--~~~~~ 261 (472)
T COG0008 208 THVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLN--EDGKKLSKRKG--AVSIG 261 (472)
T ss_pred ceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeec--CCCCeecCccC--ccccc
Confidence 67889999665555557778889999999888887776 33579999983 55444
No 144
>PLN02381 valyl-tRNA synthetase
Probab=57.39 E-value=25 Score=39.24 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=38.9
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEeccc
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
.+.+.|+|....+ ..+++|++.+|.- +|| .||+||.+... ++.++++.-|..+....|-+|
T Consensus 112 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~ 176 (1066)
T PLN02381 112 WWEKSGYFGADAK--------SSKPPFVIVLPPPNVTG-ALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDH 176 (1066)
T ss_pred HHHHCCCccCCcc--------CCCCcEEEEeCCCCCCC-CccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCC
Confidence 5666787754221 2345688888875 455 89999988553 344566666766666555444
No 145
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=56.26 E-value=52 Score=31.61 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=31.3
Q ss_pred CceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEecc-ccccccC-CCHHHHHHHH
Q 022242 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD-EKCMWKN-LSVEESQRLA 145 (300)
Q Consensus 84 ~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~-~~~~~r~-l~~e~i~~~~ 145 (300)
....+|.|+- +.+|+||+..+ ++..+.++ .++|.|+.. .....++ .+.++-.+..
T Consensus 6 ~~~~~~~G~F---~P~H~GHl~~i---~~a~~~~d-~l~v~i~s~~~~~~~~~~~~~~~R~~mi 62 (340)
T PRK05379 6 YDYLVFIGRF---QPFHNGHLAVI---REALSRAK-KVIVLIGSADLARSIKNPFSFEERAQMI 62 (340)
T ss_pred ceEEEEeecc---CCCCHHHHHHH---HHHHHHCC-EEEEEEccCCCCCcCCCCCCHHHHHHHH
Confidence 3466888865 56999997655 33333233 577777632 1212223 6776655543
No 146
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=55.44 E-value=1.3e+02 Score=27.00 Aligned_cols=57 Identities=21% Similarity=0.407 Sum_probs=34.9
Q ss_pred ceEEEEecCCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccc-cccccC-CCHHHHHHHHHHHH
Q 022242 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDE-KCMWKN-LSVEESQRLARENA 149 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~-~~~~r~-l~~e~i~~~~~~~~ 149 (300)
...+|.|+- ..+|+||+-.+ ++ +.++ + .++|.||=-. ++..++ .++.+-....+..+
T Consensus 5 d~~v~iGRF---QPfH~GHl~~I---~~al~~~-d-evII~IGSA~~s~t~~NPFTa~ER~~MI~~aL 64 (196)
T PRK13793 5 DYLVFIGRF---QPFHLAHMQTI---EIALQQS-R-YVILALGSAQMERNIKNPFLAIEREQMILSNF 64 (196)
T ss_pred eEEEEEecC---CCCcHHHHHHH---HHHHHhC-C-EEEEEEccCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 456889976 46999997554 34 5553 4 6777776443 333333 88877665444433
No 147
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=54.76 E-value=13 Score=41.90 Aligned_cols=51 Identities=22% Similarity=0.081 Sum_probs=28.8
Q ss_pred eeeccccCchhHHHHH---HHHHHHhCCCCC--ceeecccccCCCCCCCccccCCCCCeee
Q 022242 233 CLIPCAIDQDPYFRMT---RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIY 288 (300)
Q Consensus 233 clvp~G~DQd~~~~l~---rdla~r~~~~kp--~~i~~~~lp~L~g~g~KMSkS~p~saI~ 288 (300)
.++.=|.||....-.+ .-++ +....| ..+.|-++..-+ |+|||||. +|.|.
T Consensus 675 D~i~eG~Dq~rgWf~s~l~~s~~--l~~~~PfK~VlvHG~Vld~d--G~KMSKSl-GNvID 730 (1205)
T PTZ00427 675 DFIAEGLDQTRGWFYTLLVISTL--LFDKAPFKNLICNGLVLASD--GKKMSKRL-KNYPD 730 (1205)
T ss_pred eEEEEecchhccHHHHHHHHHHH--hcCCCCcceeEEccEEEcCC--CCCcccCC-CCCCC
Confidence 3457899987633222 2222 222344 233455554445 59999999 77774
No 148
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.47 E-value=11 Score=40.74 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=24.2
Q ss_pred CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEeccc
Q 022242 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 94 PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
+|| +||+||.+..- ++.++++.-|..+..+-|=+|
T Consensus 44 VTG-~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh 81 (877)
T COG0525 44 VTG-SLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH 81 (877)
T ss_pred CCC-cccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCC
Confidence 387 99999987432 455577766777777656555
No 149
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=50.95 E-value=25 Score=36.53 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=27.3
Q ss_pred cCCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe
Q 022242 82 KGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (300)
Q Consensus 82 ~~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~ 126 (300)
++++|++..|.= +|| .||+||.+... ++.++++.-|..|....|
T Consensus 21 ~~~~f~i~~~PPy~nG-~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G 68 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANG-DLHIGHALNKTIKDIIARYKRMQGYNVLFPPG 68 (601)
T ss_dssp TSGEEEEEE---BTSS-S-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCCcEEEEeCCCCCCC-cccHHHHHHHHHHHHHHHHHHhCCcEeCCCCC
Confidence 456788888764 465 89999988664 344467766777766544
No 150
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=49.69 E-value=7.2 Score=42.22 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=11.3
Q ss_pred ccccCCCCCeeecCC
Q 022242 277 KMSASDPNSAIYVTD 291 (300)
Q Consensus 277 KMSkS~p~saI~L~D 291 (300)
|||||. +|.|.+.|
T Consensus 604 KMSKS~-GN~v~p~~ 617 (842)
T TIGR00396 604 KMSKSK-GNGIDPQE 617 (842)
T ss_pred hhhhcC-CCcCCHHH
Confidence 999999 88887643
No 151
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=48.81 E-value=11 Score=38.28 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=15.3
Q ss_pred cCCCCCCCccccCCCCCeeecCC
Q 022242 269 PALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 269 p~L~g~g~KMSkS~p~saI~L~D 291 (300)
-.+.| +|||||. +|.|.+.|
T Consensus 273 l~~~g--~KMSKSl-GN~itl~d 292 (490)
T PRK14536 273 LLMNK--GKMSKSA-GQFLTLSS 292 (490)
T ss_pred EeecC--ccccccC-CCcccHHH
Confidence 34554 8999999 88998844
No 152
>PLN02946 cysteine-tRNA ligase
Probab=48.23 E-value=6.6 Score=40.50 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=17.9
Q ss_pred eecccccCCCCCCCccccCCCCCeeecCC
Q 022242 263 IESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 263 i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+|+-+|. +.| +|||||. +|.|.+.|
T Consensus 312 ~H~G~v~-~~G--~KMSKSl-GN~itl~d 336 (557)
T PLN02946 312 IHNGFVT-VDS--EKMSKSL-GNFFTIRQ 336 (557)
T ss_pred eEeeEEE-eCC--CCcCCcC-CCcCCHHH
Confidence 4555555 554 8999998 88887754
No 153
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=47.17 E-value=1.8e+02 Score=24.74 Aligned_cols=71 Identities=25% Similarity=0.461 Sum_probs=35.0
Q ss_pred EEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEecc-ccccccC-CCHHHHHHHHHHHHHHHH-HcCCCCCceEE
Q 022242 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD-EKCMWKN-LSVEESQRLARENAKDII-ACGFDVTKTFI 164 (300)
Q Consensus 88 vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~-~~~~~r~-l~~e~i~~~~~~~~~~ii-A~G~dp~kt~I 164 (300)
+|.|.- +.+|+||+..+ ++..+..+ .++|.|+-. .....+. .+.++-.+ +++..+ ..|++-+++.+
T Consensus 3 v~~G~F---dP~H~GHl~~i---~~a~~~~d-~l~v~v~s~~~~~~~~~~~~~~~R~~----mi~~~~~~~~~~~~~v~v 71 (163)
T cd02166 3 LFIGRF---QPFHLGHLKVI---KWILEEVD-ELIIGIGSAQESHTLENPFTAGERVL----MIRRALEEEGIDLSRYYI 71 (163)
T ss_pred EEeecc---CCCCHHHHHHH---HHHHHHCC-EEEEEecCCCCCCCCCCCCCHHHHHH----HHHHHHHhcCCCcCeEEE
Confidence 555543 56999997655 33333233 355555432 2222222 66665443 333222 23566667766
Q ss_pred Eeccc
Q 022242 165 FSDFD 169 (300)
Q Consensus 165 ~~ns~ 169 (300)
....+
T Consensus 72 ~~~~d 76 (163)
T cd02166 72 IPVPD 76 (163)
T ss_pred EecCC
Confidence 54433
No 154
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=46.19 E-value=95 Score=26.34 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=26.4
Q ss_pred eccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCC
Q 022242 235 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 282 (300)
Q Consensus 235 vp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~ 282 (300)
+-+|.||..-.....++-++.|...-....-+++-. +.+.|.|+|.
T Consensus 92 ivvs~et~~~~~~in~~r~~~gl~~l~i~~v~~~~~--~~~~~~SSt~ 137 (153)
T PRK00777 92 IVVSPETYPGALKINEIRRERGLKPLEIVVIDFVLA--EDGKPISSTR 137 (153)
T ss_pred EEEChhhhhhHHHHHHHHHHCCCCceEEEEEeeeec--CCCCeeeHHH
Confidence 357888766666667777777764322223333222 2257888874
No 155
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=45.36 E-value=2.1e+02 Score=27.16 Aligned_cols=114 Identities=17% Similarity=0.248 Sum_probs=75.0
Q ss_pred CCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHh-
Q 022242 38 GCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA- 116 (300)
Q Consensus 38 g~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~- 116 (300)
|.-+=+++...-||.|++. .| .=|=.--.|..++.++.+.++ .+|.+..|+=||. ..|=+---.+ +..+++..
T Consensus 57 GtCKSa~~~~sDLe~l~~~-t~--~IR~Y~sDCn~le~v~pAa~~-~g~kv~lGiw~td-d~~~~~~~ti-l~ay~~~~~ 130 (305)
T COG5309 57 GTCKSADQVASDLELLASY-TH--SIRTYGSDCNTLENVLPAAEA-SGFKVFLGIWPTD-DIHDAVEKTI-LSAYLPYNG 130 (305)
T ss_pred CCCcCHHHHHhHHHHhccC-Cc--eEEEeeccchhhhhhHHHHHh-cCceEEEEEeecc-chhhhHHHHH-HHHHhccCC
Confidence 5555566777778877765 33 223333567788999988887 5799999999996 7885543222 34455542
Q ss_pred CCCeEEEEEeccccccccC-CCHHHHHHHHHHHHHHHHHcCCCC
Q 022242 117 FKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDV 159 (300)
Q Consensus 117 ~~~~v~I~I~D~~~~~~r~-l~~e~i~~~~~~~~~~iiA~G~dp 159 (300)
-+....|.+| -|+ +.|+ ++.+++-++.........+.|+|-
T Consensus 131 ~d~v~~v~VG-nEa-l~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 131 WDDVTTVTVG-NEA-LNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred CCceEEEEec-hhh-hhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 1334455566 455 5565 999999888766666666788874
No 156
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=45.13 E-value=11 Score=40.45 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=10.5
Q ss_pred ccccCCCCCeeecC
Q 022242 277 KMSASDPNSAIYVT 290 (300)
Q Consensus 277 KMSkS~p~saI~L~ 290 (300)
|||||. +|.|...
T Consensus 570 KMSKS~-GN~i~p~ 582 (805)
T PRK00390 570 KMSKSK-GNVVDPD 582 (805)
T ss_pred EeCCCC-CCCCCHH
Confidence 999999 7777653
No 157
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=44.91 E-value=12 Score=39.33 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=27.7
Q ss_pred ccccCch--hHH--HHHHHHHHHhCC-CC-CceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 236 PCAIDQD--PYF--RMTRDVAPRIGY-HK-PALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 236 p~G~DQd--~~~--~l~rdla~r~~~-~k-p~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
-+|+| . ||. +++.--|- +|. +- -..+|+-+| .+.| +|||||. +|.|.+.|
T Consensus 273 ~gG~D-L~FPHHeNEiAQseA~-~~~~~~v~y~~H~G~L-~i~G--~KMSKSL-GNfItp~d 328 (651)
T PTZ00399 273 SGGID-LKFPHHDNELAQSEAY-FDKHQWVNYFLHSGHL-HIKG--LKMSKSL-KNFITIRQ 328 (651)
T ss_pred ccCCC-CCCCcchhHHHHHHHh-hCCCCCCcEEEEEEEE-Eecc--chhhhcC-CCcccHHH
Confidence 46777 5 663 44433222 232 11 233443443 3454 8999998 88888754
No 158
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=44.65 E-value=8.6 Score=40.63 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=17.0
Q ss_pred eecccccCCCCCCCccccCCCCCeeecCC
Q 022242 263 IESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 263 i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+|+-++. +.| +|||||. +|.|.+.|
T Consensus 497 mHnG~V~-vdG--eKMSKSL-GN~it~~d 521 (699)
T PRK14535 497 LHNGFIR-VDG--EKMSKSL-GNFFTIRE 521 (699)
T ss_pred EECCeEe-eCC--CccCCCC-CCcCCHHH
Confidence 4555554 554 8999998 77776543
No 159
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=44.33 E-value=2.6e+02 Score=25.77 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=44.4
Q ss_pred CceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHH-cCCCCCce
Q 022242 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA-CGFDVTKT 162 (300)
Q Consensus 84 ~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA-~G~dp~kt 162 (300)
.++-++.|....+ ---.+...++.|+. |+..++++. |. ..+ .+.+++.++- +++.+ .++ -.
T Consensus 69 ~~~~vi~gv~~~s------t~~~i~~a~~a~~~-Gad~v~v~~-P~--~~~-~s~~~l~~y~----~~ia~~~~~---pi 130 (289)
T PF00701_consen 69 GRVPVIAGVGANS------TEEAIELARHAQDA-GADAVLVIP-PY--YFK-PSQEELIDYF----RAIADATDL---PI 130 (289)
T ss_dssp TSSEEEEEEESSS------HHHHHHHHHHHHHT-T-SEEEEEE-ST--SSS-CCHHHHHHHH----HHHHHHSSS---EE
T ss_pred CceEEEecCcchh------HHHHHHHHHHHhhc-CceEEEEec-cc--ccc-chhhHHHHHH----HHHHhhcCC---CE
Confidence 4567888888654 11233356778885 776555444 53 222 6777777543 33333 332 34
Q ss_pred EEEeccccCCcccH-HHHHHHHhhc
Q 022242 163 FIFSDFDYVGGAFY-KNMVKVAKCV 186 (300)
Q Consensus 163 ~I~~ns~~~~~~~~-~~~~~l~k~~ 186 (300)
++|++-.+.+..+- ..+.+++++.
T Consensus 131 ~iYn~P~~tg~~ls~~~l~~L~~~~ 155 (289)
T PF00701_consen 131 IIYNNPARTGNDLSPETLARLAKIP 155 (289)
T ss_dssp EEEEBHHHHSSTSHHHHHHHHHTST
T ss_pred EEEECCCccccCCCHHHHHHHhcCC
Confidence 67776544433332 3344566543
No 160
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=44.22 E-value=22 Score=39.61 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=38.7
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEeccc
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
.+.+.|+|..... + +.+++|+++.|.= +|| .||+||.+... ++.++++.-|..|....|-|+
T Consensus 31 ~W~~~~~f~~~~~-----~--~~~~~f~i~~pPP~~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~ 96 (1052)
T PRK14900 31 FWQERGYFHGDEH-----D--RTRPPFSIVLPPPNVTG-SLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDH 96 (1052)
T ss_pred HHHHCCCccCCcc-----c--CCCCCEEEecCCCCCCC-cchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCc
Confidence 5566777754211 0 2345688988875 565 89999988553 344566666766666555444
No 161
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=43.55 E-value=35 Score=32.93 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=24.3
Q ss_pred EEEecCCCCCCcchhhhHHHHH---HHHHHHhCCCeEEEE--Eeccc
Q 022242 88 LYTGRGPSSEALHLGHLVPFMF---TKYLQDAFKVPLVIQ--LTDDE 129 (300)
Q Consensus 88 vytG~~PTg~~lHlGhli~~~~---~~~lQ~~~~~~v~I~--I~D~~ 129 (300)
=|+.-=|++ .||+||+-..++ +..+-++.|..|+-. |+|+=
T Consensus 25 E~sSpNp~k-plHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G 70 (354)
T PF00750_consen 25 EFSSPNPTK-PLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWG 70 (354)
T ss_dssp EE---BTTS-S-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTS
T ss_pred EecCCCCCC-CCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCC
Confidence 388889998 899999886653 333334457666553 77764
No 162
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=43.52 E-value=28 Score=35.90 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=26.8
Q ss_pred eEEEEecCCCCCCcchhhhHHHHH---HHHHHHhCCCeEEE--EEecc
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMF---TKYLQDAFKVPLVI--QLTDD 128 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~---~~~lQ~~~~~~v~I--~I~D~ 128 (300)
..=|++-=|++ .||+||+-..+. +..+.++.|..|.- -|+|+
T Consensus 115 ~ve~~spn~~~-~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~ 161 (566)
T TIGR00456 115 IIEFSSANPAG-PLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDW 161 (566)
T ss_pred EEEecCCCCCC-CCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecch
Confidence 33478888998 799999887652 33333444554443 37775
No 163
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=42.34 E-value=15 Score=37.26 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=16.9
Q ss_pred ecccccCCCCCCCccccCCCCCeeecCC
Q 022242 264 ESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 264 ~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
|+-++ .+.| +|||||. +|.|++.|
T Consensus 269 H~g~l-~~~g--~KMSKSl-GN~i~l~d 292 (481)
T PRK14534 269 HGEFL-IMEY--EKMSKSN-NNFITIKD 292 (481)
T ss_pred EecEE-EecC--ceecccC-CCcccHHH
Confidence 44443 3454 8999999 88988854
No 164
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=41.08 E-value=16 Score=35.78 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCCceeecc---cccCCCCCCCccccCCC--CCeeec
Q 022242 245 FRMTRDVAPRIGYHKPALIESS---FFPALQGETGKMSASDP--NSAIYV 289 (300)
Q Consensus 245 ~~l~rdla~r~~~~kp~~i~~~---~lp~L~g~g~KMSkS~p--~saI~L 289 (300)
..|+|++..+..+..|..++.. ..+|.++ ++|||.|.+ +++||+
T Consensus 195 ~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~-~~~i~l~~~~~~~~i~~ 243 (377)
T TIGR00234 195 RDLIRRNLPSLGFGLTVPLLTPADGEKMGKSG-GGAVSLDEGKYDFYQFW 243 (377)
T ss_pred HHHHHHhcCCCceeeceeeecCCCCCCccCCC-CCcccCCccHhhhhhhh
Confidence 3478888877677667666655 7888886 589999987 688876
No 165
>PLN02843 isoleucyl-tRNA synthetase
Probab=40.81 E-value=73 Score=35.22 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=27.7
Q ss_pred cCCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe
Q 022242 82 KGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (300)
Q Consensus 82 ~~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~ 126 (300)
++++|++..|.= ++| .+||||.+... ++.++++.-|..+....|
T Consensus 30 ~~~~f~i~~~PPy~nG-~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG 77 (974)
T PLN02843 30 NGESFTLHDGPPYANG-DLHIGHALNKILKDFINRYQLLQGKKVHYVPG 77 (974)
T ss_pred CCCCEEEeCCCCCCCC-CcchhHHHHHHHHHHHHHHHHhcCCccccCCc
Confidence 356788887864 466 89999988653 333455554655544433
No 166
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=40.04 E-value=25 Score=33.46 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=38.3
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCe
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 286 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~sa 286 (300)
+.|.-|.|....--.-+-|.+.||.+.|...|.+++-..+| +|+||++...+
T Consensus 201 THViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g--~kLSKR~~~~~ 252 (314)
T PF00749_consen 201 THVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDG--KKLSKRKGAKS 252 (314)
T ss_dssp SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTS--SBSSTTCSHHB
T ss_pred CeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCC--cEechhhcccc
Confidence 67788888655544557788999998888888887777665 89999984334
No 167
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=38.62 E-value=54 Score=36.19 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=35.6
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~ 126 (300)
.+.+.++|....+.+ +.+++|+++.|.= +|| .||+||.+... ++.++++.-|..|.-..|
T Consensus 23 ~W~~~~~f~~~~~~~------~~~~~f~i~~~PPy~nG-~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~G 86 (975)
T PRK06039 23 FWKENDIFEKSIENR------EGGPEFVFYDGPPTANG-LPHYGHLLTRTIKDVVPRYKTMKGYKVERRAG 86 (975)
T ss_pred HHHHCCCcccCcccc------CCCCCEEEeCCCCCCCC-CccHhhhHhhHHHHHHHHHHHhCCCcccCcCC
Confidence 455567765432211 2346799999875 566 89999988543 344466654555544433
No 168
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=36.86 E-value=87 Score=26.67 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=24.7
Q ss_pred CCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccc
Q 022242 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 83 ~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
.++..+-.|.- |.+|+||---+-.+....+..+.+.+++.=|+|
T Consensus 4 ~~~~~v~iG~F---DGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~ 47 (157)
T PF06574_consen 4 NKKSVVAIGNF---DGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPH 47 (157)
T ss_dssp -S-EEEEES-----TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-
T ss_pred CCCcEEEEeCC---CCccHHHHHHHHHHhhhhhhcccceEEEEcccC
Confidence 35666777765 679999977776666665555766666655666
No 169
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.28 E-value=42 Score=34.90 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=26.4
Q ss_pred EEecCCCCCCcchhhhHHHHH---HHH-HHHhCCCeEEEE--Eeccc
Q 022242 89 YTGRGPSSEALHLGHLVPFMF---TKY-LQDAFKVPLVIQ--LTDDE 129 (300)
Q Consensus 89 ytG~~PTg~~lHlGhli~~~~---~~~-lQ~~~~~~v~I~--I~D~~ 129 (300)
|+.--||+ .|||||+-..++ +.. |... |..|+-. |+|+=
T Consensus 123 ~sSaNptk-plHiGHlR~aiiGDsLaril~~~-Gy~V~r~~yvnD~G 167 (577)
T COG0018 123 YSSANPTG-PLHIGHLRNAIIGDSLARILEFL-GYDVTRENYVNDWG 167 (577)
T ss_pred EeCCCCCC-CcccchhhhhHHHHHHHHHHHHc-CCCeeEEeeECcHH
Confidence 78888998 799999886652 333 4444 5555443 77764
No 170
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=36.10 E-value=96 Score=31.34 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=29.6
Q ss_pred eEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccc
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
+++=.-=-||| -||||-+-..++.-.+.+..|-.+++-|-|..
T Consensus 34 VRvRFAPSPTG-fLHlGgLRTALfNYLfArk~gGkFiLRiEDTD 76 (524)
T KOG1149|consen 34 VRVRFAPSPTG-FLHLGGLRTALFNYLFARKKGGKFILRIEDTD 76 (524)
T ss_pred eEEeecCCCCc-ceehhhHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 44444456788 89999999985543366666777777776654
No 171
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=35.21 E-value=54 Score=36.05 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=33.3
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEE
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVI 123 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I 123 (300)
.+.+.++|....+ .+++|++.+|.= ||| .||+||..... ++.++|+.-|..+..
T Consensus 10 ~W~~~~~fe~~~~---------~~~kf~i~~ppPy~nG-~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~ 67 (938)
T TIGR00395 10 RWEEAHIFEADPD---------DREKFFLTMAYPYLNG-VMHAGHCRTFTIPEVSARFERMKGKNVLF 67 (938)
T ss_pred HHHhCCCcccCCC---------CCCceEEecCCCCCCC-CcccchhhhhhHHHHHHHHHHhcCCccCC
Confidence 4455667654321 135677777775 455 89999988653 445577765655544
No 172
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.87 E-value=39 Score=36.77 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=33.2
Q ss_pred eccccCchhHHHHHHHHH--HHhCCCCCc--eeecccccCCCCCCCccccCCCCCeee
Q 022242 235 IPCAIDQDPYFRMTRDVA--PRIGYHKPA--LIESSFFPALQGETGKMSASDPNSAIY 288 (300)
Q Consensus 235 vp~G~DQd~~~~l~rdla--~r~~~~kp~--~i~~~~lp~L~g~g~KMSkS~p~saI~ 288 (300)
+--|-| -=+|=.+|-+. -+|...-|. .+.|+++..-+| .|||||- +|.|.
T Consensus 550 lETG~D-ILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~G--RKMSKSL-GNVID 603 (995)
T KOG0432|consen 550 LETGHD-ILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHG--RKMSKSL-GNVID 603 (995)
T ss_pred hhcCch-HHHHHHHHHHHhhhhhcCCCCchheeechhhccccc--cccchhh-ccccC
Confidence 345666 55566665443 445555553 356888888886 9999999 77774
No 173
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.80 E-value=36 Score=36.45 Aligned_cols=52 Identities=21% Similarity=0.138 Sum_probs=29.5
Q ss_pred eeeccccCch-hHHHHH--HHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCee
Q 022242 233 CLIPCAIDQD-PYFRMT--RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 287 (300)
Q Consensus 233 clvp~G~DQd-~~~~l~--rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI 287 (300)
.+..=|.||. .||.-. --+|.+-..|=-+.+.|-|.-.=. |.|||||- +|.|
T Consensus 568 Dv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~--G~KMSKSl-GNVi 622 (937)
T KOG0433|consen 568 DVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDEN--GNKMSKSL-GNVV 622 (937)
T ss_pred eeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCC--ccchhhcc-cCcC
Confidence 3446788885 466433 455554332211234444443333 59999999 7776
No 174
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=34.53 E-value=38 Score=36.67 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=28.6
Q ss_pred CCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe
Q 022242 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (300)
Q Consensus 83 ~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~ 126 (300)
+++|+++.|.= ||| .||+||.+... +..++++.-|..|....|
T Consensus 35 ~~~f~i~~~pPy~nG-~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G 81 (861)
T TIGR00392 35 KPEFIFHDGPPYANG-SIHLGHALNKILKDIILRYKTMQGFNVTRKPG 81 (861)
T ss_pred CCCeEEecCCCCCCC-CccHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 45689999984 345 89999988543 344567665655555444
No 175
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.25 E-value=1.4e+02 Score=31.33 Aligned_cols=71 Identities=27% Similarity=0.370 Sum_probs=38.4
Q ss_pred EEEec--CCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccC-CCHHHHHHHHHHHHHHHHH-cCCCCCce
Q 022242 88 LYTGR--GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIA-CGFDVTKT 162 (300)
Q Consensus 88 vytG~--~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~-l~~e~i~~~~~~~~~~iiA-~G~dp~kt 162 (300)
|+|-| +|-| -|||||.-.+ .+++ +.++.|-..++.. |+. ++ ..-++- .+-++++.+ +||.|-|+
T Consensus 249 V~TRFPPEPNG-~LHIGHaKAI-nvNFgyAk~~~G~cyLRf-DDT----NPEkEee~y----f~sI~e~V~WLG~~P~kv 317 (764)
T KOG1148|consen 249 VVTRFPPEPNG-ILHIGHAKAI-NVNFGYAKAHGGVCYLRF-DDT----NPEKEEEEY----FESIKEMVAWLGFEPYKV 317 (764)
T ss_pred eEEeCCCCCCc-eeeecchhhe-eechhhhhhhCCeEEEec-CCC----CcchhhHHH----HHHHHHHHHHhCCCceee
Confidence 77777 5677 8999998776 4444 5555443334432 332 11 111111 123444444 69999665
Q ss_pred EEEeccccC
Q 022242 163 FIFSDFDYV 171 (300)
Q Consensus 163 ~I~~ns~~~ 171 (300)
. ..|++.
T Consensus 318 T--ysSDyF 324 (764)
T KOG1148|consen 318 T--YSSDYF 324 (764)
T ss_pred e--cchhHH
Confidence 4 455555
No 176
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=32.82 E-value=74 Score=22.06 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=16.7
Q ss_pred CCcchhhhHHHHHHHHHHHhCCCeEEEEEec
Q 022242 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127 (300)
Q Consensus 97 ~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D 127 (300)
+.+|.||..-+ ++..+.++ .+++.|+-
T Consensus 9 dp~H~GH~~~l---~~a~~~~~-~~vv~i~~ 35 (66)
T TIGR00125 9 DPFHLGHLDLL---ERAKELFD-ELIVGVGS 35 (66)
T ss_pred CCCCHHHHHHH---HHHHHhCC-EEEEEECc
Confidence 57999996655 44444445 56666643
No 177
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=32.70 E-value=96 Score=29.87 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=47.8
Q ss_pred cHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHh----cCCceEEEEecCCCCCCcchhhh
Q 022242 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYE----KGEKFYLYTGRGPSSEALHLGHL 104 (300)
Q Consensus 29 dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~----~~~~~~vytG~~PTg~~lHlGhl 104 (300)
.|.++.+++|=..+... + ..+.+|+.|. .++..-++.+. .+++..+|.| |.+.+|+||+
T Consensus 94 ~~~~fy~klGF~~i~~~-----~-----~~~v~mE~~~----~~~~~y~~~l~~~~~~~~~i~~~~g---~fdP~t~GH~ 156 (332)
T TIGR00124 94 EYAALFEYCGFKTLAEA-----K-----DQGVLLENSA----TRLKRYCSTLPKPRTPGNKIGSIVM---NANPFTNGHR 156 (332)
T ss_pred hHHHHHHHcCCEEeeee-----c-----ceEEEEeccC----cCHHHHHHHHHHhccCCCcEEEEEe---CcCCCchHHH
Confidence 35556666665443321 0 0234555554 23444444442 2346778777 5688999996
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHH
Q 022242 105 VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAK 150 (300)
Q Consensus 105 i~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~ 150 (300)
--+ ....+.++.-+++.+. ..+. -.+.++-.+.+++..+
T Consensus 157 ~li---~~A~~~~d~~~v~v~~-~~~~---~f~~~~R~~~v~~~~~ 195 (332)
T TIGR00124 157 YLI---EQAARQCDWLHLFVVK-EDAS---LFSYDERFALVKQGIQ 195 (332)
T ss_pred HHH---HHHHHHCCEEEEEEEe-CCCC---CCCHHHHHHHHHHHhc
Confidence 544 3322334433333332 2111 1566665554444443
No 178
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=32.45 E-value=1.7e+02 Score=25.21 Aligned_cols=48 Identities=27% Similarity=0.488 Sum_probs=24.7
Q ss_pred EEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccc-cccccC-CCHHHHH
Q 022242 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCMWKN-LSVEESQ 142 (300)
Q Consensus 88 vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~-~~~~r~-l~~e~i~ 142 (300)
+|.|.- +.+|+||+--+ ++..+.++ .++|.|+... .+..++ .+.++-.
T Consensus 3 l~~G~F---dP~H~GHl~ii---~~a~~~~D-~lii~i~s~~~~~k~~~p~~~~eR~ 52 (165)
T TIGR01527 3 FYIGRF---QPFHLGHLEVI---KKIAEEVD-ELIIGIGSAQESHTLENPFTAGERI 52 (165)
T ss_pred EEEecc---CCCCHHHHHHH---HHHHHHCC-EEEEEEcCCCCCCCCCCCCCHHHHH
Confidence 455543 56999997544 44333334 3555454433 333233 6665433
No 179
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.89 E-value=27 Score=37.74 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=12.4
Q ss_pred CCccccCCCCCeeecCC
Q 022242 275 TGKMSASDPNSAIYVTD 291 (300)
Q Consensus 275 g~KMSkS~p~saI~L~D 291 (300)
|+|||||. +|.|-+++
T Consensus 577 g~KMSKSK-gN~v~p~~ 592 (814)
T COG0495 577 GEKMSKSK-GNVVDPEE 592 (814)
T ss_pred CCcccccc-CCCCCHHH
Confidence 58999999 78876543
No 180
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=30.23 E-value=1e+02 Score=29.15 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=22.6
Q ss_pred ccCCHHHHHHHH-hcCCceEEEEecCCCCCCcchhhhHHH
Q 022242 69 AHRDLNDILDAY-EKGEKFYLYTGRGPSSEALHLGHLVPF 107 (300)
Q Consensus 69 ~~~d~~~il~~~-~~~~~~~vytG~~PTg~~lHlGhli~~ 107 (300)
+..++.+.+..+ +.|++ .|+=||-+.||=||+--+
T Consensus 6 ti~~lr~~~~~~r~~gk~----Vg~VPTMG~LH~GHlsLV 41 (285)
T COG0414 6 TIAELRQAIKALRKEGKR----VGLVPTMGNLHEGHLSLV 41 (285)
T ss_pred hHHHHHHHHHHHHHcCCE----EEEEcCCcccchHHHHHH
Confidence 333444444333 34444 699999999999996544
No 181
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=29.67 E-value=60 Score=33.48 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=26.2
Q ss_pred EEecCCCCCCcchhhhHHHHH---HHHHHHhCCCeEEE--EEeccc
Q 022242 89 YTGRGPSSEALHLGHLVPFMF---TKYLQDAFKVPLVI--QLTDDE 129 (300)
Q Consensus 89 ytG~~PTg~~lHlGhli~~~~---~~~lQ~~~~~~v~I--~I~D~~ 129 (300)
|+.--|++ .||+||+-...+ +..+-++.|..|.- -|+|+=
T Consensus 119 ~sSpNp~k-plHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G 163 (562)
T PRK12451 119 YSSPNIAK-PFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWG 163 (562)
T ss_pred ecCCCCCC-CcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCch
Confidence 88889998 799999886652 33333334555443 377764
No 182
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=29.44 E-value=80 Score=27.22 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=22.6
Q ss_pred CCcchhhhHHHHHHHHHHHhCCCeEEEEEeccc
Q 022242 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 97 ~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
|.+|+||.--+-.++.+.+..+...++..-|++
T Consensus 9 DgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~ 41 (180)
T cd02064 9 DGVHLGHQALIKTLKKIARERGLPSAVLTFDPH 41 (180)
T ss_pred CccCHHHHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 579999988776666665544555555555665
No 183
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=28.56 E-value=1.5e+02 Score=23.57 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=21.4
Q ss_pred CCcchhhhHHHHHHHHHHHhCCC-eEEEEEeccccccc-cC-CCHHHHHH
Q 022242 97 EALHLGHLVPFMFTKYLQDAFKV-PLVIQLTDDEKCMW-KN-LSVEESQR 143 (300)
Q Consensus 97 ~~lHlGhli~~~~~~~lQ~~~~~-~v~I~I~D~~~~~~-r~-l~~e~i~~ 143 (300)
+.+|.||+--+ +...+.++. .+++..+|-+.... +. .+.++-.+
T Consensus 7 dP~H~GH~~~l---~~a~~~~~~~~vi~v~~~~~~~k~~~~~~~~~~R~~ 53 (157)
T PF01467_consen 7 DPPHNGHLNLL---REARELFDEDLVIVVPSDNSPHKDKKPIFSFEERLE 53 (157)
T ss_dssp TT--HHHHHHH---HHHHHHSSESEEEEEEEEHHCHSTTSSSSTHHHHHH
T ss_pred CcccHHHHHHH---HHHHHhccccccccccccccccccccccCcHHHHHH
Confidence 67999997544 343343444 35555555543221 22 56655443
No 184
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=28.24 E-value=1e+02 Score=26.05 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=18.8
Q ss_pred CCcchhhhHHHHHHHHHHHhCCCeEEEEEeccc
Q 022242 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 97 ~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
|.+|.||+--+ +...+. |-.++|-|+.++
T Consensus 12 D~~H~GHi~~L---~~A~~l-gd~liVgV~~D~ 40 (152)
T cd02173 12 DLFHIGHIEFL---EKAREL-GDYLIVGVHDDQ 40 (152)
T ss_pred cCCCHHHHHHH---HHHHHc-CCEEEEEEeCcH
Confidence 68999997644 333332 456777777665
No 185
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=27.81 E-value=2e+02 Score=24.19 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=26.4
Q ss_pred eEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEe-ccccccccCCCHHHHHHH
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEKCMWKNLSVEESQRL 144 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~-D~~~~~~r~l~~e~i~~~ 144 (300)
..+|-| |=+.+|.||+--+ ++..+.++. ++|.++ +++|- ...+.++-.++
T Consensus 3 iai~~G---SFDPih~GHl~ii---~~A~~~~D~-v~v~v~~np~K~--~~~s~e~R~~~ 53 (140)
T PRK13964 3 IAIYPG---SFDPFHKGHLNIL---KKALKLFDK-VYVVVSINPDKS--NASDLDSRFKN 53 (140)
T ss_pred EEEEee---eeCCCCHHHHHHH---HHHHHhCCE-EEEEeccCCCCC--CCCCHHHHHHH
Confidence 346666 3367999997644 444444553 444444 44441 11566654443
No 186
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=27.68 E-value=41 Score=32.06 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=36.5
Q ss_pred HHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCC
Q 022242 34 IDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPS 95 (300)
Q Consensus 34 ~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PT 95 (300)
++.||- -+..|+.+.|+ +|.+.....++++..++.+.+.+...-...+-++||
T Consensus 216 ie~fg~------~l~~iQ~l~g~---~f~~~e~~~~~~~V~~iv~~m~~~a~~agqSSwGPt 268 (312)
T COG1907 216 IESFGE------ALNEIQELGGK---WFKKVEGGLQREDVKEIVDEMVEAAYGAGQSSWGPT 268 (312)
T ss_pred HHHHHH------HHHHHHHHHhh---hhhhhhceeccHHHHHHHHHHHHhcccccccccCCE
Confidence 566775 68888888888 788888888888888888777653222233344444
No 187
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=27.67 E-value=1.3e+02 Score=30.11 Aligned_cols=61 Identities=31% Similarity=0.525 Sum_probs=42.0
Q ss_pred EEEecCCCCCCcchhhhHHHH-HHHHHHHhCCCeE-EEEEeccc-c-ccccCCCHHHHHHHHHHHHHHHHHcCCC
Q 022242 88 LYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPL-VIQLTDDE-K-CMWKNLSVEESQRLARENAKDIIACGFD 158 (300)
Q Consensus 88 vytG~~PTg~~lHlGhli~~~-~~~~lQ~~~~~~v-~I~I~D~~-~-~~~r~l~~e~i~~~~~~~~~~iiA~G~d 158 (300)
-|||+.|.- |. ++..+-+..|.|. .|.+|=+| . --|+.++.++.-+++.+.++.+++.||+
T Consensus 58 GYTGmtP~d----------F~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~ 122 (426)
T PRK15458 58 GYTGMTPAD----------FRGFVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK 122 (426)
T ss_pred CcCCCCHHH----------HHHHHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 477777763 21 2233444457776 66677777 3 1245588899999999999999999994
No 188
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=26.47 E-value=41 Score=33.53 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=32.7
Q ss_pred HHHhCCCeE-EEEEeccc-c-ccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 022242 113 LQDAFKVPL-VIQLTDDE-K-CMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (300)
Q Consensus 113 lQ~~~~~~v-~I~I~D~~-~-~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (300)
+-+..|+|. .|.+|=+| . .-|+.++-++.-+++++.++.+++.||+ |..+
T Consensus 74 iA~~~g~~~~~iiLGGDHLGP~~w~~lpaeeAM~~A~~li~ayv~AGF~--KIHL 126 (424)
T PF08013_consen 74 IADEVGFPRDRIILGGDHLGPNPWQHLPAEEAMAKAKELIRAYVEAGFT--KIHL 126 (424)
T ss_dssp HHHHCT--GGGEEEEEEEESSCCCTTSBHHHHHHHHHHHHHHHHCTT----EEEE
T ss_pred HHHHcCCchhhEEecCCCCCcccccCCCHHHHHHHHHHHHHHHHHcCCc--eEee
Confidence 444457776 35555555 2 3345589999999999999999999993 4444
No 189
>PLN02286 arginine-tRNA ligase
Probab=26.37 E-value=62 Score=33.57 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=25.3
Q ss_pred EEecCCCCCCcchhhhHHHHH---HHH-HHHhCCCeEEE--EEeccc
Q 022242 89 YTGRGPSSEALHLGHLVPFMF---TKY-LQDAFKVPLVI--QLTDDE 129 (300)
Q Consensus 89 ytG~~PTg~~lHlGhli~~~~---~~~-lQ~~~~~~v~I--~I~D~~ 129 (300)
|+.--||+ .||+||+-...+ +.. |.-. |..|.- -|+|+=
T Consensus 123 fsSpNp~k-plHvGHlRsaiiGdsLaril~~~-G~~V~r~nyinD~G 167 (576)
T PLN02286 123 FSSPNIAK-EMHVGHLRSTIIGDTLARMLEFS-GVEVLRRNHVGDWG 167 (576)
T ss_pred ecCCCCCC-CCccccccchhhHHHHHHHHHHc-CCceEEEEeecchH
Confidence 78888998 799999876542 333 4444 554443 367663
No 190
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=26.08 E-value=75 Score=36.05 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=36.9
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEecc
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDD 128 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~ 128 (300)
.+.+.++|....+. -+.+++|.+|.|-= +|| .+|+||++... ++.++++.-|..|....|-+
T Consensus 84 ~W~e~~~f~~~~~~------~~~~~~Fv~~~gPPyanG-~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD 149 (1205)
T PTZ00427 84 YWKSIDAFNTSNKL------AKNKKAYIFYDGPPFATG-LPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWD 149 (1205)
T ss_pred HHHhCCCcccCccc------cCCCCcEEEecCCCCCCC-CcchhHHHHHHHHHHHHHHHHcCCCeeccCCccC
Confidence 45556776543321 12345688888875 455 89999988543 34446666566666554433
No 191
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=26.06 E-value=1.6e+02 Score=29.54 Aligned_cols=61 Identities=26% Similarity=0.465 Sum_probs=42.2
Q ss_pred EEEecCCCCCCcchhhhHHHH-HHHHHHHhCCCeE-EEEEeccc-c-ccccCCCHHHHHHHHHHHHHHHHHcCCC
Q 022242 88 LYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPL-VIQLTDDE-K-CMWKNLSVEESQRLARENAKDIIACGFD 158 (300)
Q Consensus 88 vytG~~PTg~~lHlGhli~~~-~~~~lQ~~~~~~v-~I~I~D~~-~-~~~r~l~~e~i~~~~~~~~~~iiA~G~d 158 (300)
-|||+.|.- |. ++..+-+..|.|. .|.+|=+| . --|+.++.++.-+++.+.++.+++.||+
T Consensus 54 GYTGmtP~d----------F~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~ 118 (420)
T TIGR02810 54 GYTGMTPAD----------FRDFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT 118 (420)
T ss_pred CcCCCCHHH----------HHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 477777763 21 2333444457776 66667777 3 1245589999999999999999999994
No 192
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=25.98 E-value=65 Score=35.32 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=28.3
Q ss_pred CCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEecc
Q 022242 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDD 128 (300)
Q Consensus 83 ~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~ 128 (300)
+++|++.+|.= ++| .+|+||.+... ++.++++.-|..+....|-+
T Consensus 48 ~~~f~i~~~pPyanG-~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D 96 (912)
T PRK05743 48 KPKFILHDGPPYANG-DIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWD 96 (912)
T ss_pred CCcEEEeCCCCCCCC-CccHHHHHHHHHHHHHHHHHHccCCcccCCCCcC
Confidence 34588877774 455 89999988543 33446665566555544433
No 193
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.71 E-value=62 Score=35.32 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=21.2
Q ss_pred CCCCcchhhhHHHHH---HHHHHHhCCCeEEEEEeccc
Q 022242 95 SSEALHLGHLVPFMF---TKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 95 Tg~~lHlGhli~~~~---~~~lQ~~~~~~v~I~I~D~~ 129 (300)
|| +|||||.+.+-+ +.+++++.|-.+.-.-|-+|
T Consensus 87 TG-~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DH 123 (995)
T KOG0432|consen 87 TG-SLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDH 123 (995)
T ss_pred cc-ccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccc
Confidence 76 999999886542 22345555666655545555
No 194
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=25.58 E-value=1.2e+02 Score=29.00 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=27.5
Q ss_pred ceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccc
Q 022242 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
+-.+-.|.= |.+|+||---+-.++-.-++-+.|.+++.-+||
T Consensus 16 ~~~l~IG~F---DGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~ 57 (304)
T COG0196 16 GCVLTIGNF---DGVHLGHQKLLAQALEAAEKRGLPVVVITFEPH 57 (304)
T ss_pred CcEEEEEcC---CccchhHHHHHHHHHHHHHHhCCceEEEEecCC
Confidence 345556655 579999975444444333445788888888888
No 195
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=25.00 E-value=59 Score=34.44 Aligned_cols=42 Identities=26% Similarity=0.414 Sum_probs=35.1
Q ss_pred CcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCC
Q 022242 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72 (300)
Q Consensus 26 ~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d 72 (300)
...+||++|+. |+.+++|++..-|-.| ..+++|+|.+...||
T Consensus 228 ~slnvdaiiR~-gi~rftDq~g~Lw~SL----AdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 228 QSLNVDAIIRG-GIRRFTDQLGFLWCSL----ADYYIRSGLFEKARD 269 (835)
T ss_pred cccCHHHHHHh-hcccCcHHHHHHHHHH----HHHHHHhhhhHHHHH
Confidence 46899999997 9999999988888887 578999998766543
No 196
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=24.72 E-value=89 Score=29.70 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=26.5
Q ss_pred eEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccc
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
..+-.|.= |.+|+||.--+-.++-+.+..+.+.++.--|+|
T Consensus 15 ~vv~iG~F---DGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~ 55 (305)
T PRK05627 15 CVLTIGNF---DGVHRGHQALLARAREIARERGLPSVVMTFEPH 55 (305)
T ss_pred EEEEEeeC---CcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 34555554 579999977665566555544666656555776
No 197
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=24.68 E-value=5.2e+02 Score=24.90 Aligned_cols=95 Identities=21% Similarity=0.474 Sum_probs=46.9
Q ss_pred CcccccCcccCCCcccHHHHHHHhCCCC-------C-CHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhc-CC
Q 022242 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQR-------L-DQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEK-GE 84 (300)
Q Consensus 14 ~~~~~pw~v~~~~~~dy~kl~~~fg~~~-------~-~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~-~~ 84 (300)
++.-|||+... + .+++++|+.- + +-+||+.+-+ ||+| -++.+|.- +..+.+...+.+.+ |.
T Consensus 91 ~~~stpfd~~s---v---d~l~~~~v~~~KIaS~~~~n~pLL~~~A~-~gkP--vilStGma-tl~Ei~~Av~~i~~~G~ 160 (329)
T TIGR03569 91 EFLSTPFDLES---A---DFLEDLGVPRFKIPSGEITNAPLLKKIAR-FGKP--VILSTGMA-TLEEIEAAVGVLRDAGT 160 (329)
T ss_pred cEEEEeCCHHH---H---HHHHhcCCCEEEECcccccCHHHHHHHHh-cCCc--EEEECCCC-CHHHHHHHHHHHHHcCC
Confidence 45667776543 2 2344454322 2 2236666555 4553 45788873 33344444444443 32
Q ss_pred c---eEE-EEecC-CCCCCcchhhhHHHHHHHHHHHhCCCeEEE
Q 022242 85 K---FYL-YTGRG-PSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123 (300)
Q Consensus 85 ~---~~v-ytG~~-PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I 123 (300)
+ +.+ -|... |+- . +-+-+..+.+|++.|++||-.
T Consensus 161 ~~~~i~llhC~s~YP~~--~---~~~nL~~I~~Lk~~f~~pVG~ 199 (329)
T TIGR03569 161 PDSNITLLHCTTEYPAP--F---EDVNLNAMDTLKEAFDLPVGY 199 (329)
T ss_pred CcCcEEEEEECCCCCCC--c---ccCCHHHHHHHHHHhCCCEEE
Confidence 2 333 24333 543 2 223344456788888877664
No 198
>PRK13663 hypothetical protein; Provisional
Probab=24.64 E-value=34 Score=34.20 Aligned_cols=47 Identities=15% Similarity=0.480 Sum_probs=36.2
Q ss_pred hhhhhhccCcccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCc
Q 022242 6 EKQREEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPP 58 (300)
Q Consensus 6 ~~~~~~~~~~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~ 58 (300)
.|+..=.+-..|||+-.++ ...|+|+|=++-|-. |-.-||+++|+.|
T Consensus 225 AATaDL~DvNmIDpfHLeAYg~~tvNYNRDvE~FPv------L~~i~ekI~G~sp 273 (493)
T PRK13663 225 AATADLDDVNMIDPFHLEAYGKTAVNYNRDIEVFPV------LKRILEKILGKSP 273 (493)
T ss_pred HhhcCcccccccCchhHHhhCccccccccccHHHHH------HHHHHHHHcCCCC
Confidence 3444445667899997765 678999999999965 7777899999855
No 199
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=24.31 E-value=2.4e+02 Score=23.62 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=18.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccc
Q 022242 95 SSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 95 Tg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
|=+.+|.||..-+.....+- +..+.|.++.+.
T Consensus 7 tFD~lH~GH~~Ll~~a~~~~---~d~v~vgvt~d~ 38 (143)
T cd02164 7 TFDRLHDGHKILLSVAFLLA---GEKLIIGVTSDE 38 (143)
T ss_pred cCCCCCHHHHHHHHHHHHHh---cCCcEEEEeCch
Confidence 34789999987664444332 223555555443
No 200
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=23.16 E-value=1.9e+02 Score=28.93 Aligned_cols=61 Identities=26% Similarity=0.412 Sum_probs=41.5
Q ss_pred EEEecCCCCCCcchhhhHHHH-HHHHHHHhCCCeE-EEEEeccc-c-ccccCCCHHHHHHHHHHHHHHHHHcCCC
Q 022242 88 LYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPL-VIQLTDDE-K-CMWKNLSVEESQRLARENAKDIIACGFD 158 (300)
Q Consensus 88 vytG~~PTg~~lHlGhli~~~-~~~~lQ~~~~~~v-~I~I~D~~-~-~~~r~l~~e~i~~~~~~~~~~iiA~G~d 158 (300)
-|||+.|.- |. ++..+-+..|.|. .|.+|=+| . --|+..+.++.-+++.+.++.+++.||+
T Consensus 55 GYTGmtP~d----------F~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~ 119 (421)
T PRK15052 55 GYTGMTPAD----------FREFVYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFS 119 (421)
T ss_pred CcCCCCHHH----------HHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 477777663 21 2233444457776 66677777 3 1245578899999999999999999994
No 201
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=22.60 E-value=2.7e+02 Score=23.09 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=23.0
Q ss_pred CCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccc
Q 022242 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 83 ~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
+++..+-.|.- |-+|+||.--+..+ .+.++..++..-.|++
T Consensus 10 ~~~~v~~~G~F---DgvH~GH~~ll~~a---~~~~~~~~v~v~~d~~ 50 (144)
T TIGR02199 10 GKKIVFTNGCF---DILHAGHVSYLQQA---RALGDRLVVGVNSDAS 50 (144)
T ss_pred CCCEEEEeCcc---cccCHHHHHHHHHH---HHhCCccEEEEECCcC
Confidence 44555555655 68999996654333 3333333333446776
No 202
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=22.11 E-value=3.4e+02 Score=22.86 Aligned_cols=47 Identities=23% Similarity=0.382 Sum_probs=24.9
Q ss_pred eEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEe-ccccccccC-CCHHHHH
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEKCMWKN-LSVEESQ 142 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~-D~~~~~~r~-l~~e~i~ 142 (300)
..+|.|-- +.+|.||+.-+..... .++ .+++.++ +++| ++ .+.++-.
T Consensus 3 igi~gGsF---dP~H~GHl~~~~~a~~---~~d-~v~v~~~~~~~k---~~~~~~~~R~ 51 (159)
T PRK00168 3 IAIYPGSF---DPITNGHLDIIERASR---LFD-EVIVAVAINPSK---KPLFSLEERV 51 (159)
T ss_pred EEEEeeec---CCCCHHHHHHHHHHHH---HCC-EEEEEECCCCCC---CCCCCHHHHH
Confidence 34666633 6799999875543322 233 3455555 4433 23 5555433
No 203
>PLN02660 pantoate--beta-alanine ligase
Probab=22.09 E-value=93 Score=29.45 Aligned_cols=46 Identities=13% Similarity=0.299 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHH
Q 022242 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 294 (300)
Q Consensus 242 d~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~ 294 (300)
-|-.-+.|.+++-++.+- ..+-.+++.--+| ==||+-+ .||+++..
T Consensus 157 ~QQl~vIrrmV~dL~~~v-~I~~~ptvRe~dG--LA~SSRN----~yLs~~eR 202 (284)
T PLN02660 157 YQQWRVIRRMVRDLDFDI-EVVGSPIVREADG--LAMSSRN----VRLSAEER 202 (284)
T ss_pred HHHHHHHHHHHHHcCCCc-eEEeeCceECCCC--Ceecccc----ccCCHHHH
Confidence 555666788888888732 2234566666555 4566542 45554443
No 204
>PLN02959 aminoacyl-tRNA ligase
Probab=21.97 E-value=52 Score=36.85 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=19.3
Q ss_pred CCCCCcchhhhHHHH---HHHHHHHhCCCeEEE
Q 022242 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVI 123 (300)
Q Consensus 94 PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I 123 (300)
++| .|||||.+... +..++|+.-|..+..
T Consensus 56 ~NG-~lHiGHa~t~t~~D~i~Rykrm~G~~vlf 87 (1084)
T PLN02959 56 MNG-LLHLGHAFSLSKLEFAAAYHRLRGANVLL 87 (1084)
T ss_pred CCC-CcchhhHHHHHHHHHHHHHHHcCCCccCC
Confidence 476 89999988664 445577765544443
No 205
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=21.88 E-value=2.9e+02 Score=23.39 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=26.0
Q ss_pred EEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccc-cC-CCHHHHHHH
Q 022242 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW-KN-LSVEESQRL 144 (300)
Q Consensus 88 vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~-r~-l~~e~i~~~ 144 (300)
+|.|.- +.+|+||+.-+ ++..+..+ .++|+++-....-. +. .+.++-.++
T Consensus 3 l~~G~F---~P~H~GHl~li---~~a~~~~d-~v~vi~~~~~~~~~~~~~~~~~~R~~m 54 (158)
T cd02167 3 IVFGKF---APLHTGHVYLI---YKALSQVD-ELLIIVGSDDTRDDARTGLPLEKRLRW 54 (158)
T ss_pred EEeecc---CCCCHHHHHHH---HHHHHHCC-EEEEEECCCCcccccCCCCCHHHHHHH
Confidence 555643 57999997654 33222234 45666654432211 22 666655543
No 206
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.81 E-value=43 Score=32.54 Aligned_cols=43 Identities=19% Similarity=0.546 Sum_probs=32.1
Q ss_pred hhccCcccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCc
Q 022242 10 EEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPP 58 (300)
Q Consensus 10 ~~~~~~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~ 58 (300)
.-.+-.+|||+-.+. +..++|++=|+-|-. |..-+|+++|+.|
T Consensus 229 DLdDvNmIDPFHL~~Yg~~avnYNRDiEvFPl------Lkr~lE~i~gkSp 273 (493)
T COG4868 229 DLDDVNMIDPFHLETYGETAVNYNRDIEVFPL------LKRMLERILGKSP 273 (493)
T ss_pred CcccccccCchhhhhhcchhhccCCchHHHHH------HHHHHHHHhCCCC
Confidence 334557899998765 678999999998854 5556788888844
No 207
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=21.45 E-value=1.5e+02 Score=30.41 Aligned_cols=36 Identities=31% Similarity=0.322 Sum_probs=23.6
Q ss_pred ccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHH
Q 022242 67 FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPF 107 (300)
Q Consensus 67 ~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~ 107 (300)
+.+..++..++....+ + -.||=||-+.||=||+--+
T Consensus 4 ~~~~~~l~~~~~~~~~-~----~ig~VPTMG~LH~GHlsLi 39 (512)
T PRK13477 4 LRTVAGLRAWLRQQRS-E----TIGFVPTMGALHQGHLSLI 39 (512)
T ss_pred EecHHHHHHHHHHhcC-C----cEEEECCCcchhHHHHHHH
Confidence 3344455555544433 2 5799999999999996544
No 208
>PLN02882 aminoacyl-tRNA ligase
Probab=21.16 E-value=98 Score=34.97 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=28.2
Q ss_pred CCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe
Q 022242 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (300)
Q Consensus 83 ~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~ 126 (300)
+++|++|.|-= +|| .+|+||.+... ++.++++.-|..|....|
T Consensus 37 ~~~f~~~dgPPyanG-~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~G 83 (1159)
T PLN02882 37 LPEYIFYDGPPFATG-LPHYGHILAGTIKDIVTRYQSMTGHHVTRRFG 83 (1159)
T ss_pred CCCEEEeCCCCCCCC-cchhhHHHHHHHHHHHHHHHHcCCCcccccCc
Confidence 35688999874 455 89999988543 344466665655555433
No 209
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=20.83 E-value=82 Score=22.83 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=14.5
Q ss_pred HHHHHHHHhhCCCchhhh
Q 022242 45 SLVDRVQRLTGRPPHVFL 62 (300)
Q Consensus 45 ~~l~r~~~~~~~~~~~l~ 62 (300)
..+++||+-||+++..++
T Consensus 4 sy~~~Ie~kTGk~~~~W~ 21 (61)
T PF14117_consen 4 SYLPNIEKKTGKTLDEWL 21 (61)
T ss_pred HHHhHhHHHHCcCHHHHH
Confidence 478999999999776654
Done!