Query 022242
Match_columns 300
No_of_seqs 242 out of 1685
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 16:15:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tze_A Tryptophanyl-tRNA synth 100.0 3.5E-86 1.2E-90 641.0 21.5 287 10-300 20-312 (406)
2 3hv0_A Tryptophanyl-tRNA synth 100.0 3.7E-86 1.3E-90 639.2 18.4 284 16-300 3-289 (393)
3 3i05_A Tryptophanyl-tRNA synth 100.0 2E-85 6.7E-90 634.5 21.4 284 13-300 8-292 (395)
4 3hzr_A Tryptophanyl-tRNA synth 100.0 7.4E-82 2.5E-86 607.7 22.3 281 15-300 12-292 (386)
5 3jxe_A Tryptophanyl-tRNA synth 100.0 1.4E-80 4.7E-85 599.9 24.1 273 13-300 3-276 (392)
6 1r6t_A Tryptophanyl-tRNA synth 100.0 2.1E-80 7.1E-85 612.3 20.9 291 10-300 78-372 (477)
7 2ip1_A Tryptophanyl-tRNA synth 100.0 3.3E-80 1.1E-84 604.4 21.1 291 10-300 20-318 (432)
8 1r6u_A Tryptophanyl-tRNA synth 100.0 1.4E-80 4.8E-85 606.8 18.0 291 10-300 31-325 (437)
9 3foc_A Tryptophanyl-tRNA synth 100.0 9.9E-79 3.4E-83 594.1 19.3 275 26-300 32-356 (451)
10 3a04_A Tryptophanyl-tRNA synth 100.0 4.4E-77 1.5E-81 573.1 18.6 273 13-300 2-279 (372)
11 2yxn_A Tyrosyl-tRNA synthetase 100.0 4E-54 1.4E-58 406.7 12.0 229 59-300 8-260 (322)
12 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.5E-53 5E-58 410.2 13.6 228 60-300 8-274 (375)
13 2cya_A Tyrosyl-tRNA synthetase 100.0 4.4E-53 1.5E-57 405.6 15.2 227 60-300 11-261 (364)
14 2j5b_A Tyrosyl-tRNA synthetase 100.0 7.6E-53 2.6E-57 401.8 15.7 227 60-300 16-255 (348)
15 2jan_A Tyrosyl-tRNA synthetase 100.0 9.9E-53 3.4E-57 409.9 14.4 229 60-300 8-257 (432)
16 3prh_A Tryptophanyl-tRNA synth 100.0 1.6E-51 5.4E-56 396.4 15.4 218 66-300 11-251 (388)
17 2ts1_A Tyrosyl-tRNA synthetase 100.0 1.6E-51 5.3E-56 400.5 14.6 228 60-300 6-255 (419)
18 3vgj_A Tyrosyl-tRNA synthetase 100.0 3.9E-51 1.3E-55 392.9 16.5 227 60-300 32-270 (373)
19 2pid_A Tyrosyl-tRNA synthetase 100.0 1.2E-51 4.2E-56 394.3 12.0 230 58-300 12-279 (356)
20 1h3f_A Tyrosyl-tRNA synthetase 100.0 9E-51 3.1E-55 396.7 17.5 225 58-300 11-254 (432)
21 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 1.9E-50 6.5E-55 393.4 19.5 227 60-300 8-256 (420)
22 2cyb_A Tyrosyl-tRNA synthetase 100.0 9.2E-50 3.1E-54 377.0 19.7 224 60-300 8-236 (323)
23 1n3l_A Tyrosyl-tRNA synthetase 100.0 1.3E-48 4.5E-53 375.5 18.9 224 58-300 10-245 (372)
24 1y42_X Tyrosyl-tRNA synthetase 100.0 7.1E-49 2.4E-53 379.2 15.2 228 60-300 39-318 (392)
25 2zp1_A Tyrosyl-tRNA synthetase 100.0 4.6E-48 1.6E-52 364.2 18.0 217 60-300 5-226 (314)
26 3tzl_A Tryptophanyl-tRNA synth 100.0 1.8E-48 6.2E-53 368.0 12.4 196 85-300 3-214 (322)
27 2dlc_X Tyrosyl-tRNA synthetase 100.0 2.3E-47 7.9E-52 369.4 17.3 226 60-300 14-250 (394)
28 3p0j_A Tyrosyl-tRNA synthetase 100.0 5.4E-47 1.8E-51 387.9 19.0 226 61-300 17-253 (690)
29 3n9i_A Tryptophanyl-tRNA synth 100.0 3.1E-47 1.1E-51 362.0 13.2 198 85-300 15-232 (346)
30 2yy5_A Tryptophanyl-tRNA synth 100.0 4.8E-47 1.6E-51 361.7 13.0 199 84-300 3-227 (348)
31 2g36_A Tryptophanyl-tRNA synth 100.0 4.2E-47 1.4E-51 361.1 11.6 199 84-300 11-227 (340)
32 2el7_A Tryptophanyl-tRNA synth 100.0 1E-46 3.6E-51 358.0 14.2 198 87-300 3-217 (337)
33 1i6k_A TRPRS, tryptophanyl-tRN 100.0 8.6E-47 3E-51 357.4 13.3 196 86-300 2-217 (328)
34 1yi8_B Tryptophanyl-tRNA synth 100.0 1.4E-46 4.7E-51 358.9 14.6 199 83-300 20-237 (351)
35 3sz3_A Tryptophanyl-tRNA synth 100.0 9.6E-47 3.3E-51 358.3 11.6 198 86-300 7-226 (341)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.5E-39 5E-44 333.1 12.6 201 83-300 380-587 (690)
37 2cfo_A Glutamyl-tRNA synthetas 98.5 2.6E-06 8.8E-11 84.3 15.8 170 93-284 9-254 (492)
38 1nzj_A Hypothetical protein YA 98.5 1.4E-06 4.8E-11 81.0 12.9 173 93-287 13-238 (298)
39 1j09_A Glutamyl-tRNA synthetas 98.4 1.9E-06 6.5E-11 84.8 12.3 172 93-284 9-250 (468)
40 2ja2_A Glutamyl-tRNA synthetas 98.2 9.3E-06 3.2E-10 80.4 11.8 170 93-283 14-263 (498)
41 3afh_A Glutamyl-tRNA synthetas 98.0 9.9E-06 3.4E-10 80.0 8.0 176 86-283 26-261 (488)
42 3al0_C Glutamyl-tRNA(Gln) amid 98.0 7.6E-06 2.6E-10 82.6 7.1 176 86-283 130-365 (592)
43 3aii_A Glutamyl-tRNA synthetas 97.6 0.00034 1.2E-08 69.9 11.1 70 91-171 102-172 (553)
44 2o5r_A Glutamyl-tRNA synthetas 97.5 0.00023 7.9E-09 70.1 8.8 49 233-283 220-268 (481)
45 4g6z_A Glutamate-tRNA ligase; 97.3 0.0032 1.1E-07 62.1 13.7 77 85-171 25-102 (490)
46 1irx_A Lysyl-tRNA synthetase; 97.3 0.0014 4.9E-08 64.9 11.3 52 236-289 235-290 (523)
47 4gri_A Glutamate--tRNA ligase; 97.0 0.0061 2.1E-07 60.4 12.8 49 233-283 231-279 (512)
48 1qtq_A GLNRS, protein (glutami 94.5 0.23 7.9E-06 49.5 11.2 84 78-171 17-103 (553)
49 3u1f_A Methionyl-tRNA syntheta 94.3 0.11 3.8E-06 51.1 8.5 80 80-160 5-96 (542)
50 2hz7_A Glutaminyl-tRNA synthet 94.0 0.23 8E-06 51.8 10.4 84 78-171 57-143 (851)
51 3fnr_A Arginyl-tRNA synthetase 93.1 0.025 8.7E-07 55.3 1.3 58 233-291 238-298 (464)
52 1rqg_A Methionyl-tRNA syntheta 90.2 0.79 2.7E-05 47.0 8.6 77 84-161 2-91 (722)
53 2csx_A Methionyl-tRNA syntheta 89.9 0.16 5.6E-06 49.4 3.2 75 86-161 6-93 (497)
54 2csx_A Methionyl-tRNA syntheta 89.8 0.88 3E-05 44.2 8.3 54 234-291 253-308 (497)
55 3h99_A Methionyl-tRNA syntheta 89.7 1.3 4.5E-05 43.8 9.6 77 84-161 18-106 (560)
56 2d5b_A Methionyl-tRNA syntheta 88.9 1.1 3.6E-05 43.6 8.2 73 87-160 5-90 (500)
57 2d5b_A Methionyl-tRNA syntheta 88.8 0.24 8.2E-06 48.2 3.4 55 234-291 254-310 (500)
58 4arc_A Leucine--tRNA ligase; l 88.0 1.7 5.8E-05 45.7 9.4 92 60-160 37-140 (880)
59 3kfl_A Methionyl-tRNA syntheta 86.5 0.25 8.5E-06 49.2 2.0 77 83-160 25-113 (564)
60 2zue_A Arginyl-tRNA synthetase 86.3 0.17 5.7E-06 51.3 0.6 55 233-291 379-439 (629)
61 1iq0_A Arginyl-tRNA synthetase 86.1 0.1 3.5E-06 52.4 -1.1 52 236-291 352-407 (592)
62 3kfl_A Methionyl-tRNA syntheta 85.5 2.9 9.9E-05 41.4 9.1 54 234-291 297-352 (564)
63 1ile_A Ilers, isoleucyl-tRNA s 84.4 0.48 1.6E-05 49.3 3.0 52 235-289 548-602 (821)
64 3tqo_A Cysteinyl-tRNA syntheta 84.3 1.9 6.6E-05 41.9 7.1 73 88-161 29-112 (462)
65 4dlp_A Aminoacyl-tRNA syntheta 84.3 3.7 0.00013 40.3 9.2 75 84-160 25-112 (536)
66 2x1l_A Methionyl-tRNA syntheta 84.2 4 0.00014 39.7 9.4 76 84-160 12-99 (524)
67 3u1f_A Methionyl-tRNA syntheta 83.3 0.46 1.6E-05 46.6 2.2 48 236-289 283-334 (542)
68 1gax_A Valrs, valyl-tRNA synth 82.7 2.9 0.0001 43.8 8.1 60 60-129 19-82 (862)
69 2x1l_A Methionyl-tRNA syntheta 82.3 0.42 1.5E-05 46.8 1.5 53 235-291 269-323 (524)
70 3c8z_A Cysteinyl-tRNA syntheta 82.2 3.6 0.00012 39.2 7.9 73 87-160 42-126 (414)
71 4dlp_A Aminoacyl-tRNA syntheta 81.6 0.49 1.7E-05 46.6 1.7 52 234-291 279-334 (536)
72 3h99_A Methionyl-tRNA syntheta 80.6 0.65 2.2E-05 46.0 2.2 52 236-291 305-358 (560)
73 2v0c_A Aminoacyl-tRNA syntheta 79.8 3.2 0.00011 43.5 7.2 76 84-160 33-120 (878)
74 3sp1_A Cysteinyl-tRNA syntheta 79.1 6.6 0.00022 38.6 8.7 75 86-161 43-139 (501)
75 3c8z_A Cysteinyl-tRNA syntheta 78.6 0.83 2.8E-05 43.6 2.1 52 235-290 248-303 (414)
76 1ffy_A Isoleucyl-tRNA syntheta 78.2 1.3 4.3E-05 46.8 3.5 52 234-290 551-607 (917)
77 1li5_A Cysrs, cysteinyl-tRNA s 77.0 4 0.00014 39.5 6.5 72 86-159 23-107 (461)
78 1li5_A Cysrs, cysteinyl-tRNA s 76.1 1 3.5E-05 43.7 2.0 50 236-290 225-278 (461)
79 1f7u_A Arginyl-tRNA synthetase 72.0 1.3 4.6E-05 44.5 1.7 54 233-292 367-421 (607)
80 1gax_A Valrs, valyl-tRNA synth 70.5 2.2 7.4E-05 44.8 3.0 52 235-290 485-540 (862)
81 1ile_A Ilers, isoleucyl-tRNA s 66.6 3.5 0.00012 42.8 3.5 46 82-128 36-85 (821)
82 1wkb_A Leucyl-tRNA synthetase; 64.6 2.9 0.0001 43.2 2.5 52 236-291 608-663 (810)
83 1wz2_A Leucyl-tRNA synthetase; 64.2 3.8 0.00013 43.4 3.3 24 263-290 639-662 (967)
84 3tqo_A Cysteinyl-tRNA syntheta 62.4 2.2 7.7E-05 41.5 1.1 20 268-290 262-281 (462)
85 3foc_A Tryptophanyl-tRNA synth 60.5 2.1 7E-05 41.7 0.4 16 230-245 232-247 (451)
86 1iq0_A Arginyl-tRNA synthetase 54.8 8.8 0.0003 38.2 3.9 42 86-128 106-152 (592)
87 1ffy_A Isoleucyl-tRNA syntheta 53.5 8 0.00027 40.7 3.5 44 82-126 46-93 (917)
88 1f7u_A Arginyl-tRNA synthetase 52.7 12 0.00042 37.5 4.6 39 89-128 149-192 (607)
89 2zue_A Arginyl-tRNA synthetase 50.2 13 0.00044 37.4 4.3 39 89-128 125-168 (629)
90 1rqg_A Methionyl-tRNA syntheta 50.1 2.9 9.8E-05 42.9 -0.5 23 264-290 334-356 (722)
91 3sp1_A Cysteinyl-tRNA syntheta 49.4 4.8 0.00016 39.6 0.9 25 262-290 287-311 (501)
92 3oqi_A YVMC, putative uncharac 49.3 1.4E+02 0.0047 26.6 10.4 94 80-180 26-130 (257)
93 3fnr_A Arginyl-tRNA synthetase 43.8 21 0.00073 34.5 4.6 46 83-129 29-80 (464)
94 1qjc_A Phosphopantetheine aden 39.1 85 0.0029 24.6 6.9 40 85-130 2-41 (158)
95 1wkb_A Leucyl-tRNA synthetase; 31.9 25 0.00085 36.2 3.1 58 60-124 16-77 (810)
96 3nv7_A Phosphopantetheine aden 31.4 1.2E+02 0.0041 24.6 6.7 48 86-143 4-53 (157)
97 3do8_A Phosphopantetheine aden 28.8 1.8E+02 0.0062 23.1 7.3 44 236-282 91-135 (148)
98 1wz2_A Leucyl-tRNA synthetase; 28.3 63 0.0022 34.0 5.5 39 84-123 34-76 (967)
99 2v0c_A Aminoacyl-tRNA syntheta 25.8 10 0.00036 39.6 -1.1 14 276-290 636-649 (878)
100 3f3m_A Phosphopantetheine aden 24.8 1.1E+02 0.0039 25.0 5.4 49 84-142 3-53 (168)
101 1o6b_A Phosphopantetheine aden 24.7 2.1E+02 0.007 22.7 7.0 37 85-128 3-39 (169)
102 3k9w_A Phosphopantetheine aden 24.5 2.3E+02 0.008 23.5 7.4 49 85-142 23-72 (187)
103 3nbk_A Phosphopantetheine aden 22.9 1.6E+02 0.0055 24.5 6.0 51 83-143 20-72 (177)
104 4arc_A Leucine--tRNA ligase; l 22.9 14 0.00049 38.7 -0.7 12 277-289 639-650 (880)
105 2g9p_A Antimicrobial peptide l 22.8 22 0.00076 19.9 0.4 16 30-45 3-18 (26)
106 3bh1_A UPF0371 protein DIP2346 22.1 20 0.00069 34.6 0.2 47 6-58 230-278 (507)
107 3oqv_A ALBC; rossman fold, cyc 22.0 2.9E+02 0.0099 24.4 7.7 92 86-180 30-132 (247)
108 4f3r_A Phosphopantetheine aden 21.7 1.8E+02 0.0063 23.5 6.1 39 85-130 6-45 (162)
109 2ejc_A Pantoate--beta-alanine 21.7 66 0.0023 29.0 3.6 46 242-295 151-197 (280)
No 1
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.5e-86 Score=641.04 Aligned_cols=287 Identities=47% Similarity=0.915 Sum_probs=260.9
Q ss_pred hhccCcccccCcccC------CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcC
Q 022242 10 EEEREQVVSPWEVSS------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83 (300)
Q Consensus 10 ~~~~~~~~~pw~v~~------~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~ 83 (300)
++++++.||||+|++ .+.|||+|||++||+++||+++++|||++||++||+|+|||+|++|+|+++++++++++
T Consensus 20 ~~~~~~~v~pw~v~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~RG~i~~~~d~~~ll~~~~~~ 99 (406)
T 3tze_A 20 GSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAHRDFNLLLDEIANN 99 (406)
T ss_dssp --------------------CCSCCCHHHHHHTTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTT
T ss_pred CccCCcccCccccccccccCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCCCeeccccHHHHHHHHhcC
Confidence 567899999999986 23699999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 022242 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (300)
Q Consensus 84 ~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (300)
+++++|+||+|||++|||||++++++++|||+++|++++|+|||+||+++++++++++++|+++++++|+|||+||++++
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~ 179 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTY 179 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHHHHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 99999999999998999999999999999999989999999999999988779999999999999999999999999999
Q ss_pred EEeccccCCcccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchh
Q 022242 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 243 (300)
Q Consensus 164 I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~ 243 (300)
||+|++|++ .+|..+++++|++|++++++++||++++|+|+|+||+|||||+++++||+|+.++ .|+||||.||+|
T Consensus 180 i~~qs~~~~-~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~---a~lvpvG~DQ~~ 255 (406)
T 3tze_A 180 IFSNVEASH-HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAAVDQDP 255 (406)
T ss_dssp EEEHHHHGG-GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTC---EEEEEEEGGGHH
T ss_pred EEeccHhHH-HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCC---CeEEeeccchHH
Confidence 999999975 8899999999999999999999998999999999999999999999999998643 499999999999
Q ss_pred HHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 244 ~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
|+++|||+|+|+|+++|+++++++||+|+|+++|||||.|+|+|||+|+|++|++||
T Consensus 256 ~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI 312 (406)
T 3tze_A 256 FFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKI 312 (406)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHH
Confidence 999999999999999999999999999999767999999889999999999999997
No 2
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=3.7e-86 Score=639.24 Aligned_cols=284 Identities=57% Similarity=1.065 Sum_probs=247.7
Q ss_pred ccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceEEEEecC
Q 022242 16 VVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG 93 (300)
Q Consensus 16 ~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~ 93 (300)
-||||+|++ ...|||+|||++||+++||+++++||+++||++||+|++||+|++|+|++++++++++|+++++|+||+
T Consensus 3 ~~~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~~ 82 (393)
T 3hv0_A 3 GSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKILDVYEKGELFYLYTGRG 82 (393)
T ss_dssp -----------------CCHHHHTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCCcccccCCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccCCHHHHHHHHhcCCCeEEEeCCC
Confidence 489999987 347999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCC
Q 022242 94 PSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (300)
Q Consensus 94 PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~-l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~ 172 (300)
|||++|||||++++++++|||+++|++++|+|||+||+++|+ ++++++++++++++++|+|+|+||++++||+|++|++
T Consensus 83 PTa~~lHlGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~ 162 (393)
T 3hv0_A 83 PSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA 162 (393)
T ss_dssp CSSSSCBSTTHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHHH
Confidence 998799999999999999999999999999999999999985 9999999999999999999999999999999999974
Q ss_pred cccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHH
Q 022242 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252 (300)
Q Consensus 173 ~~~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla 252 (300)
.+|.++++++|++|+++|++++||++++|+|+|+||+|||||+|+.+||+++..+.|++|+||||.||+||++++||+|
T Consensus 163 -~~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla 241 (393)
T 3hv0_A 163 -ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVA 241 (393)
T ss_dssp -HHHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHT
T ss_pred -HHHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHH
Confidence 6699999999999999999999999999999999999999999999999998777778899999999999999999999
Q ss_pred HHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 253 ~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
+|+|+++|+++++++||+|+|+++|||||.+||+|||+|+|++|++||
T Consensus 242 ~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI 289 (393)
T 3hv0_A 242 PRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKI 289 (393)
T ss_dssp GGGTCCCCEEEEECCCCC-------------CCCCBTTCCHHHHHHHH
T ss_pred HHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHH
Confidence 999999999999999999999768999999888999999999999997
No 3
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=2e-85 Score=634.55 Aligned_cols=284 Identities=56% Similarity=1.067 Sum_probs=249.5
Q ss_pred cCcccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceEEEEec
Q 022242 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (300)
Q Consensus 13 ~~~~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~ 92 (300)
-|.+||||+|++ .|||+|||++||+++||+++++||+++||++||+|++||+|++|+|++.+++++++|+++++|+||
T Consensus 8 ~~~~~~~~~~~~--~~dy~~l~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~G~ 85 (395)
T 3i05_A 8 HEAVVTPWSVEG--DVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNLLLDVYESGQPFYLYTGR 85 (395)
T ss_dssp ----------------CHHHHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE
T ss_pred ccceeccccccC--cccHHHHHHHhCCCcCCHHHHHHHHHhhCcchHHHHhcCCccccccHHHHHHHHhcCCCeEEEEee
Confidence 467899999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCC
Q 022242 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~ 172 (300)
+|||++|||||++++++++|||+++|++++|+|||++++++++++++++++|+++++++|+|||+||++++||+|++|++
T Consensus 86 ~PTg~~lHLGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~ 165 (395)
T 3i05_A 86 GPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMG 165 (395)
T ss_dssp CCCSSCCBGGGSHHHHHHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHTT
T ss_pred cCCCccchHHHHHHHHHHHHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHHH
Confidence 99998999999999999999999999999999999999998889999999999999999999999999999999999986
Q ss_pred cccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCC-CCcceeeccccCchhHHHHHHHH
Q 022242 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDV 251 (300)
Q Consensus 173 ~~~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~-~~~~clvp~G~DQd~~~~l~rdl 251 (300)
.||.+++++++++|++++++++||++++|+|+|+||+|||||+|+++||||+.++ .++.|+||||.||+||++++||+
T Consensus 166 -~~~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdl 244 (395)
T 3i05_A 166 -CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDI 244 (395)
T ss_dssp -TSHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHT
T ss_pred -HHHHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999886 44579999999999999999999
Q ss_pred HHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 252 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 252 a~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
|+|+|+++|+++++++||+|+|+++||||| ++|+|||+|+|++|++||
T Consensus 245 a~r~~~~~p~~l~~~~l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI 292 (395)
T 3i05_A 245 APRLGYLKPAVIHSKFFPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKI 292 (395)
T ss_dssp HHHHTCCCCEEEEECCCCCC--------------CCBTTCCHHHHHHHH
T ss_pred HHHcCCCCceeeccccccCCCCCcccCCCC-CCCcccCCCCHHHHHHHH
Confidence 999999999999999999999977899999 699999999999999997
No 4
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=7.4e-82 Score=607.67 Aligned_cols=281 Identities=29% Similarity=0.608 Sum_probs=267.4
Q ss_pred cccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceEEEEecCC
Q 022242 15 QVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGP 94 (300)
Q Consensus 15 ~~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~P 94 (300)
.-++||.....+.|||+|||++||+++||+++++|||++||++||+|+|||+|++|||++.+++++++|+++++|+||+|
T Consensus 12 ~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG~~P 91 (386)
T 3hzr_A 12 TPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQKYP 91 (386)
T ss_dssp -CCCSSCCCCSSSCCSHHHHHHHTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEESSHHHHHHHHHTTCCEEEEEEECC
T ss_pred CCcchhhhcCcccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCchHHHHCcCccccccHHHHHHHHhcCCCeEEEeccCC
Confidence 45899987667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCCcc
Q 022242 95 SSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA 174 (300)
Q Consensus 95 Tg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~~ 174 (300)
||+ |||||++++++++|||+++|++++|+|||++|+++|+++++++++|+++++++|+|||+||+|++||+||+|++ .
T Consensus 92 TG~-lHLGh~v~~~~~~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~-~ 169 (386)
T 3hzr_A 92 QKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG-K 169 (386)
T ss_dssp CSS-CBGGGHHHHHHHHHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH-H
T ss_pred CCC-ccHHHHHHHHHHHHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH-H
Confidence 995 99999999999999999889999999999999998889999999999999999999999999999999999985 7
Q ss_pred cHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHH
Q 022242 175 FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 254 (300)
Q Consensus 175 ~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r 254 (300)
+|..+.+++|++|++++++++|+++++|+|+|+||+|||||+|+.+||||+.+ +++|+||||.||+||+++|||+|+|
T Consensus 170 ~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~--~~a~~VpvG~DQ~~hl~l~Rdla~r 247 (386)
T 3hzr_A 170 MYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSS--PARCLVLDSIKNVQFHSIIDQIATT 247 (386)
T ss_dssp HHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSS--CCEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCC--CCccccccccchHHHHHHHHHHHHH
Confidence 88999999999999999999999899999999999999999999999999865 3569999999999999999999999
Q ss_pred hCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 255 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 255 ~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
+|+++|+++++++||+|+|+ +|||||+++|+|||+|+|++|++||
T Consensus 248 ~n~~~p~~l~~~~l~gLdG~-~KMSKSd~~~~I~L~D~p~~i~kKI 292 (386)
T 3hzr_A 248 LNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVERKI 292 (386)
T ss_dssp HTCCCCEEEEECCCCCTTCT-TCCCCCCTTTSCBTTCCHHHHHHHH
T ss_pred cCCCCceEeecCeeeCCCCC-CccCcCCCCCeeecCCCHHHHHHHH
Confidence 99999999999999999996 4999998899999999999999997
No 5
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-80 Score=599.87 Aligned_cols=273 Identities=47% Similarity=0.876 Sum_probs=259.4
Q ss_pred cCcccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceEEEEec
Q 022242 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (300)
Q Consensus 13 ~~~~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~ 92 (300)
+++.||||+|++ .|||+|||++||+++||+++++|||++||++||+|++||+|++|+|++.+++++++|+++++|+|+
T Consensus 3 ~~~~v~pw~v~~--~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~Rg~i~~~~d~~~l~~~~~~~~p~~i~sG~ 80 (392)
T 3jxe_A 3 EEFKVTPWEVEG--VVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLILKDYEEGRGFFLYTGR 80 (392)
T ss_dssp CCCEECSSCEES--CCCHHHHHHHTTCEECCHHHHHHHHHHTTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeeCCccccC--cccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCcCcccccCHHHHHHHHhcCCCeEEEecc
Confidence 689999999998 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~-l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
+||| +|||||++++++++|||+.+|++++|+|||+||+++++ ++++++++++++++++|+|||+||+|++||.||+|+
T Consensus 81 ~PTG-~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~ 159 (392)
T 3jxe_A 81 GPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT 159 (392)
T ss_dssp CCSS-CCBHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTST
T ss_pred CCCC-chhHHHHHHHHHHHHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhH
Confidence 9998 99999999999999999966999999999999988876 899999999999999999999999999999999997
Q ss_pred CcccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHH
Q 022242 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251 (300)
Q Consensus 172 ~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdl 251 (300)
+ ++..++++++++|+++++++++|++++|+|+|+||+|||||+ +.++ ..|+||||.||+||+++|||+
T Consensus 160 ~--~~~~~~~l~~~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaDi--------l~~~--~a~~vpvG~DQ~~hl~l~Rdl 227 (392)
T 3jxe_A 160 K--IYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPT--------FFER--KRCLIPAAIDQDPYWRLQRDF 227 (392)
T ss_dssp H--HHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGG--------GSSS--SCEEEEEEGGGHHHHHHHHHH
T ss_pred H--HHHHHHHHHhhCCHHHHhhhhccCCCCchHHHHHHHHHHhhH--------Hhhc--CCceeecccchHHHHHHHHHH
Confidence 4 888899999999999999999999999999999999999974 4452 349999999999999999999
Q ss_pred HHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 252 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 252 a~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
|+|+|+++|.++++++||+|+|+++|||||.|||+|||+|+|++|++||
T Consensus 228 a~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI 276 (392)
T 3jxe_A 228 AESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKV 276 (392)
T ss_dssp TGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHH
T ss_pred HHHcCCCCCeeeecccccCCCCCccccccCCCCCeeeCCCCHHHHHHHH
Confidence 9999999999999999999999778999999888999999999999997
No 6
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=2.1e-80 Score=612.29 Aligned_cols=291 Identities=65% Similarity=1.176 Sum_probs=267.8
Q ss_pred hhccCcccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceE
Q 022242 10 EEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (300)
Q Consensus 10 ~~~~~~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~ 87 (300)
++++++.||||+|++ .++|||+|||++|||++||+++++||+++||+++|+|++||+|++|+|++.++++++++++++
T Consensus 78 ~~~~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 157 (477)
T 1r6t_A 78 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 157 (477)
T ss_dssp ----CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEE
T ss_pred cccccceeCCccccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCcccHHHHhCCCccccCCHHHHHHHHhcCCCcE
Confidence 345689999999987 234999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec
Q 022242 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (300)
Q Consensus 88 vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~n 167 (300)
+|+||+|||++|||||++++++++|||+.+|++++|+|||+|+++.+.++++++++|+++++++|+|||+||++++||+|
T Consensus 158 vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~n 237 (477)
T 1r6t_A 158 LYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 237 (477)
T ss_dssp EEEEECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEH
T ss_pred EEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEec
Confidence 99999999779999999999989999995599999999999998886699999999999999999999999999999999
Q ss_pred cccCC--cccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHH
Q 022242 168 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 245 (300)
Q Consensus 168 s~~~~--~~~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~ 245 (300)
|+|++ ..+++++++|++++|++++++++++.+++|+|+|+||+|||||++..+++..++.+....|+||||.||+||+
T Consensus 238 sd~~~~l~~~~~~~~~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i 317 (477)
T 1r6t_A 238 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYF 317 (477)
T ss_dssp HHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHH
T ss_pred hhhhcccHHHHHHHHHHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHH
Confidence 99985 3799999999999999999999998889999999999999999987666666644445669999999999999
Q ss_pred HHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 246 ~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
+++||+|+|+|+++|..+++++||+|+|+++|||||.+|++|||+|+|++|++||
T Consensus 318 ~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi 372 (477)
T 1r6t_A 318 RMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKV 372 (477)
T ss_dssp HHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeecCCHHHHHHHh
Confidence 9999999999999999999999999998667999999777999999999999996
No 7
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=3.3e-80 Score=604.39 Aligned_cols=291 Identities=55% Similarity=1.028 Sum_probs=247.2
Q ss_pred hhccCcccccCcccCC-------CcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhc
Q 022242 10 EEEREQVVSPWEVSSS-------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEK 82 (300)
Q Consensus 10 ~~~~~~~~~pw~v~~~-------~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~ 82 (300)
.++.++.||||+|++. ++|||+|||++|||++||+++++||+++||+++|+|++||+|++|+|++++++++++
T Consensus 20 ~~~~~~~v~pw~~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~ 99 (432)
T 2ip1_A 20 TDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFFSERDFTKILDLYEQ 99 (432)
T ss_dssp --------------------------CHHHHHHHHTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHH
T ss_pred cccccceeCCCcccCccccccccccCCHHHHHHHhCCCcCCHHHHHHHHHhhCCccHHHHhCCCcccCCCHHHHHHHHhc
Confidence 4556799999999872 239999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 022242 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTK 161 (300)
Q Consensus 83 ~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~-l~~e~i~~~~~~~~~~iiA~G~dp~k 161 (300)
++++++|+||+|||++|||||++++++++|||+.+|++++++|||+|+++.++ ++++++++++++++++|+|+|+||++
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k 179 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKN 179 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHHHHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 89999999999997799999999999999999955899999999999999876 99999999999999999999999999
Q ss_pred eEEEeccccCCcccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCc
Q 022242 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241 (300)
Q Consensus 162 t~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQ 241 (300)
++||+||+|++..++..+++|+++++++++++++++.+++|+|+|+||+|||||+++.+++..+..+....|+||||.||
T Consensus 180 ~~i~~nSd~~~~~~~~~~~~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ 259 (432)
T 2ip1_A 180 TFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQ 259 (432)
T ss_dssp EEEEEHHHHCSHHHHHHHHHHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGG
T ss_pred eEEEeCchhhhhhHHHHHHHHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCceEEEeccCc
Confidence 99999999986678888889999999999999998888999999999999999999777776654222345999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 242 d~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
+||++++||+|+|+|+++|.++++++||+|+|+++|||||.+|++|||+|+|++|++||
T Consensus 260 ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI 318 (432)
T 2ip1_A 260 DPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKI 318 (432)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGGGCCBTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCCCeEeccCCHHHHHHHh
Confidence 99999999999999999999999999999999778999999777999999999999996
No 8
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=1.4e-80 Score=606.75 Aligned_cols=291 Identities=65% Similarity=1.171 Sum_probs=267.3
Q ss_pred hhccCcccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceE
Q 022242 10 EEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (300)
Q Consensus 10 ~~~~~~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~ 87 (300)
+++.++.||||+|++ .++|||+|||++|||++||+++++||+++||+++|+|++||+|++|+|++.++++++++++++
T Consensus 31 ~~~~~~~v~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 110 (437)
T 1r6u_A 31 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 110 (437)
T ss_dssp ----CCEEETTEEECSCTTCSCTTTHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHHTSEEEEESHHHHHHHHTTTCCEE
T ss_pred cccccceeCCCcccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCCCcHHHHhCCCccCCCCHHHHHHHHhcCCCcE
Confidence 446689999999987 234999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec
Q 022242 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (300)
Q Consensus 88 vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~n 167 (300)
+|+||+|||++|||||++++++++|||+.+|++++|+|||+|+++.+.++++++++|+++++++|+|+|+||++++||+|
T Consensus 111 vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~n 190 (437)
T 1r6u_A 111 LYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 190 (437)
T ss_dssp EEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEH
T ss_pred EEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence 99999999779999999999999999995589999999999998876699999999999999999999999999999999
Q ss_pred cccCCc--ccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHH
Q 022242 168 FDYVGG--AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 245 (300)
Q Consensus 168 s~~~~~--~~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~ 245 (300)
|+|++. .+++++++|+++++++++++++++.+++|+|+|+||+|||||++..+++..++.+....|+||||.||+||+
T Consensus 191 Sd~~~~l~~~~~l~~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i 270 (437)
T 1r6u_A 191 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYF 270 (437)
T ss_dssp HHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHH
T ss_pred hhhhhhHHHHHHHHHHHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHH
Confidence 999752 689999999999999999999998889999999999999999886666655554445669999999999999
Q ss_pred HHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 246 ~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
+++||+|+|+|+++|.++++++||+|+|+++|||||.+|++|||+|+|++|++||
T Consensus 271 ~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI 325 (437)
T 1r6u_A 271 RMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKV 325 (437)
T ss_dssp HHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCCeeeccCCHHHHHHHh
Confidence 9999999999999999999999999998667999999877999999999999996
No 9
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=9.9e-79 Score=594.09 Aligned_cols=275 Identities=49% Similarity=0.881 Sum_probs=258.3
Q ss_pred CcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhH
Q 022242 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLV 105 (300)
Q Consensus 26 ~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli 105 (300)
.+|||+|||++||+++||+++++||+++||++||+|+|||+|++|+|++++++++++|+++++||||+|||++|||||++
T Consensus 32 ~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~dPTagsLHLGH~v 111 (451)
T 3foc_A 32 AAVAYEDIITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLL 111 (451)
T ss_dssp HHHHHHHHHHTTTCBCCCHHHHHHHHHHHTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHH
T ss_pred ccCcHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccccHHHHHHHHhcCCCeEEEecCCCCCCCccHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999997799999999
Q ss_pred HHHHHHHHHHhCCCeEEEEEeccccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCC-cccHHHHHHHH
Q 022242 106 PFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVA 183 (300)
Q Consensus 106 ~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~-l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~-~~~~~~~~~l~ 183 (300)
++++++|||+++|++++|+|||+|++++|+ +++|++++|+++++++|+||||||++++||+||+|++ ..+|..+.+++
T Consensus 112 ~~~~l~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~ 191 (451)
T 3foc_A 112 PFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVD 191 (451)
T ss_dssp HHHHHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHH
Confidence 999999999999999999999999999885 9999999999999999999999999999999999986 57788888999
Q ss_pred hhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCc------------------------------------------
Q 022242 184 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF------------------------------------------ 221 (300)
Q Consensus 184 k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f------------------------------------------ 221 (300)
+++|+++|+++++|++++|+|+|+||+|||||+|+.+|
T Consensus 192 r~~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 271 (451)
T 3foc_A 192 RMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPV 271 (451)
T ss_dssp HTCCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHH
T ss_pred hhCCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhhhc
Confidence 99999999999999999999999999999999998777
Q ss_pred ---cccccCCC---CcceeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHH
Q 022242 222 ---PHLFSGKD---HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (300)
Q Consensus 222 ---~~i~~~~~---~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~ 295 (300)
|++|.... +++|+||||.||+||+++|||+|+|+|+++|.++++++||||+|+++|||||.+||+|+|+|+|++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~p~~ 351 (451)
T 3foc_A 272 HVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQ 351 (451)
T ss_dssp HHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCCHHH
T ss_pred ccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCCHHH
Confidence 34432111 378999999999999999999999999999999999999999997779999998889999999999
Q ss_pred HhccC
Q 022242 296 IKNKV 300 (300)
Q Consensus 296 i~~KI 300 (300)
|++||
T Consensus 352 I~kKI 356 (451)
T 3foc_A 352 IKNKI 356 (451)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99997
No 10
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=4.4e-77 Score=573.14 Aligned_cols=273 Identities=29% Similarity=0.478 Sum_probs=247.9
Q ss_pred cCcccccCcccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcccccCCHHHHHHHHhcCCceEEEEec
Q 022242 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (300)
Q Consensus 13 ~~~~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~ 92 (300)
.+++||||+|++ .+||+|||++||+++||+.+ |++++||++||+|+||||||+|||++.|++++++|+|++||||+
T Consensus 2 ~~~~v~pw~~~~--~~dy~kl~~~fg~~~i~~~l--~~~~~~~~~~h~~lrRgi~f~hRd~d~il~~~e~gk~~~v~sG~ 77 (372)
T 3a04_A 2 AAERLDPWGAVE--IKDYDRLLRTFGIRPFSEVL--PLLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAVLTGF 77 (372)
T ss_dssp ----CCSSCSTT--TTTTHHHHHTTTCEEGGGGH--HHHHHTTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeeCCCCCCC--CcCHHHHHHHhCCCCcchHH--HHHHhccCCcchhhccceeeeccCHHHHHHHHHcCCCCEEEeCc
Confidence 467899999998 89999999999999999754 78889999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~-l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
+||| +|||||++++++.+|+|+. ++.++++|||+||++++. .+.+.++.++++++++|+|||+||+|++||.||++.
T Consensus 78 ~PTG-~lHLGhyv~~~~~~~lq~~-~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~ 155 (372)
T 3a04_A 78 MPSG-KFHFGHKLTVDQLIYLQKN-GFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRG 155 (372)
T ss_dssp CCCS-CCBHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSC
T ss_pred CCCc-HhHHHHHHHHHHHHHHHhC-CCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccch
Confidence 9999 7999999999999999996 889999999999988876 455668999999999999999999999999999874
Q ss_pred CcccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHH
Q 022242 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251 (300)
Q Consensus 172 ~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdl 251 (300)
..++..+..+++.+|++++.+.++ ..+.|.+.||++||||++..+++..+++++ |+||||.||+||++||||+
T Consensus 156 -~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~yP~lqAaDil~~~~d~~~gy~a---~~VPVG~DQ~~hleltRdi 228 (372)
T 3a04_A 156 -TPYFRLIQLFSGKVTAAEMEAIYG---ELTPAKMMASLTQAADILHVQLDEYGGYRH---VVVPVGADQDPHLRLTRDL 228 (372)
T ss_dssp -HHHHHHHHHHTTSSCHHHHHHHHS---SCCHHHHHHHHHHHHHHHGGGSGGGTCCCC---EEEEEEGGGHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhhhHHHHhhhhh---ccCcccccCCcchhHHHhhhcCccccCccc---eecccchhhHHHHHHHHHH
Confidence 567888888999999999999887 478899999999999988766666555554 9999999999999999999
Q ss_pred HHHhC----CCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 252 APRIG----YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 252 a~r~~----~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
|+|+| .++|+.++++++|||+| .|||||.|||+|+|+|+|++|++||
T Consensus 229 A~rfn~~~~~~~P~~~~~~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI 279 (372)
T 3a04_A 229 ADRMAGVVELERPASTYHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKL 279 (372)
T ss_dssp HHHTTTTSCCCCCEEEEECCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHH
T ss_pred HHHhcCcccccChhhhhhcccCCCCC--CccCCCCCCcccccCCCHHHHHHHH
Confidence 99998 47899999999999997 7999999999999999999999996
No 11
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=4e-54 Score=406.69 Aligned_cols=229 Identities=15% Similarity=0.198 Sum_probs=197.8
Q ss_pred hhhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC---
Q 022242 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (300)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~--- 135 (300)
+.|++||++++|+|+++|+++++ ++++++|+||+|||+||||||+++++.++|||++ |+.++++|||+|+.+.++
T Consensus 8 ~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~~PTg~slHlGh~l~l~~~~~lQ~~-g~~~~~~i~D~~a~~~dp~g~ 85 (322)
T 2yxn_A 8 KQLQERGLVAQVTDEEALAERLA-QGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQA-GHKPVALVGGATGLIGDPSFK 85 (322)
T ss_dssp HHHHHTTCCSEESSHHHHHHHHH-HSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHCCceeeeCCHHHHHHHHc-CCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHc-CCcEEEEEccceeeecCCCCc
Confidence 48999999999999999999998 5789999999999977999999999999999997 677888999999977533
Q ss_pred ------CCHHHHHHHH---HHHHHHHHHcCCCCCceEEEeccccCCcccHHHHHH-HHhhcCHHHHHH------hhCC-C
Q 022242 136 ------LSVEESQRLA---RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVG------IFGF-T 198 (300)
Q Consensus 136 ------l~~e~i~~~~---~~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~------~~g~-~ 198 (300)
++.+++++|+ ++++++|+|||+||++++||+|++|+.+..+..+++ +++++++++|.+ ++++ .
T Consensus 86 ~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~~ 165 (322)
T 2yxn_A 86 AAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRED 165 (322)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCTT
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccCC
Confidence 4999999999 788999999999999999999999987666666665 777777776655 4443 3
Q ss_pred CCccccccchhhhhcCCCCCCCccccccCCCCcceeecc-ccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCc
Q 022242 199 GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC-AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGK 277 (300)
Q Consensus 199 ~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~-G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~K 277 (300)
+++|+|+|+||+|||||+ +.+..+++|.||+ |.||+||++++||+|+|+|..++..++.++||+|+| +|
T Consensus 166 ~~is~g~f~YP~LQaaDi--------l~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG--~K 235 (322)
T 2yxn_A 166 QGISFTEFSYNLLQGYDF--------ACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADG--TK 235 (322)
T ss_dssp CCCCHHHHTHHHHHHHHH--------HHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTS--CB
T ss_pred CCccchhhhHHHHHHHHH--------HHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCc--cc
Confidence 578999999999999964 4441223577876 999999999999999999998888889999999997 79
Q ss_pred cccCCCCCeeecCC---CHHHHhccC
Q 022242 278 MSASDPNSAIYVTD---SAKAIKNKV 300 (300)
Q Consensus 278 MSkS~p~saI~L~D---~p~~i~~KI 300 (300)
||||.+ |+|||+| +|+++++||
T Consensus 236 MSKS~~-n~I~L~d~~tsp~~~~~ki 260 (322)
T 2yxn_A 236 FGKTEG-GAVWLDPKKTSPYKFYQFW 260 (322)
T ss_dssp TTEETT-EECBSSTTTSCHHHHHHHH
T ss_pred ccCCCC-CeeeccCCCCCHHHHHHHH
Confidence 999995 6999999 999999986
No 12
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-53 Score=410.21 Aligned_cols=228 Identities=22% Similarity=0.290 Sum_probs=206.3
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhh-hHHHHHHHHHHHhCCCeEEEEEeccccccccC--C
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGh-li~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~--l 136 (300)
.|++||++..+.+.++|++++++|+++++|+||+||| +||||| +++++.++|||++ |+.++++|||+|+++.++ .
T Consensus 8 ~l~~r~~~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~yl~~l~~~~~lQ~~-G~~~~~~iaD~ha~~~~~~g~ 85 (375)
T 2cyc_A 8 NLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISG-YIHLGTGLMAGAKIADFQKA-GIKTRVFLADWHSWINDKLGG 85 (375)
T ss_dssp HHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TCBCEEEECHHHHHHTTGGGG
T ss_pred HHHhcCCceeecCHHHHHHHHhcCCCcEEEeCCCCCC-CcCchHHHHHHHHHHHHHHC-CCcEEEEecCcEEEcCCCCCC
Confidence 5789999888999999999999988999999999998 999999 7788889999997 788999999999988764 6
Q ss_pred CHHHHHHHH-HHHH----HHHHHcCCCCCceEEEeccccCCcc-cHHHHHHHHhhcCHHHHHHhh---CCC--CCccccc
Q 022242 137 SVEESQRLA-RENA----KDIIACGFDVTKTFIFSDFDYVGGA-FYKNMVKVAKCVTYNKVVGIF---GFT--GEDHIGK 205 (300)
Q Consensus 137 ~~e~i~~~~-~~~~----~~iiA~G~dp~kt~I~~ns~~~~~~-~~~~~~~l~k~~t~~~~~~~~---g~~--~~~~~g~ 205 (300)
+++++++++ .+++ ++|+|||+||+++.||.||+|+++. +|..+.++++++|+++|+++. ++. +++|+|+
T Consensus 86 ~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~k~r~~~~~i~~g~ 165 (375)
T 2cyc_A 86 DLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFAK 165 (375)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCCTTCBTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHHHHhceeEHHHHhccchhhhhccCCCCChHH
Confidence 999999999 8888 8999999999999999999998764 788889999999999999876 332 3589999
Q ss_pred cchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCC--------C-CCceeecccccCCCCC--
Q 022242 206 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--------H-KPALIESSFFPALQGE-- 274 (300)
Q Consensus 206 ~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~--------~-kp~~i~~~~lp~L~g~-- 274 (300)
|+||+||||| ++.+++ +++|||.||+||++++||+|+|+|+ . +|.++++++||+|+|+
T Consensus 166 f~YP~LQaaD--------il~~~~---~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~ 234 (375)
T 2cyc_A 166 LIYPMMQVAD--------IFYQGV---TIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPK 234 (375)
T ss_dssp HHHHHHHHHH--------HHHTTC---SEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSS
T ss_pred HHHHHHHHHH--------HHHhCC---CeecccchHHHHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCccc
Confidence 9999999996 555665 6789999999999999999999998 4 7888899999999996
Q ss_pred --------------CCccccCCCCCeeecCCCHHHHhccC
Q 022242 275 --------------TGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 275 --------------g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
++|||||.|+|+|||+|+|++|++||
T Consensus 235 ~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI 274 (375)
T 2cyc_A 235 WPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKL 274 (375)
T ss_dssp SSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHH
T ss_pred ccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHH
Confidence 48999999889999999999999996
No 13
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=4.4e-53 Score=405.55 Aligned_cols=227 Identities=23% Similarity=0.309 Sum_probs=203.4
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC--CC
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--LS 137 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~--l~ 137 (300)
.|++|| +..+.+.++|.+.+++|+++++|+||+||| +|||||+++++.++|||++ |+.++++|||+|+++.++ .+
T Consensus 11 ~l~~r~-~~e~~~~~~L~~~l~~~~~~~iy~G~~PTg-~lHlG~l~~l~~~~~lQ~~-G~~~~~~iaD~~a~~~~ps~~~ 87 (364)
T 2cya_A 11 NRIARN-TVEIVTEEELKGLLASGARIKGYIGYEPSG-VAHIGWLVWMYKVKDLVEA-GVDFSVLEATWHAYINDKLGGD 87 (364)
T ss_dssp HHHHTT-CSEEETHHHHHHHHHHCSCCEEEEEECCCS-SCBTHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTGGGGC
T ss_pred HHHHcC-chhcCCHHHHHHHHhcCCCCEEEeccCCCC-CccHhHHHHHHHHHHHHHC-CCCEEEEEeCcchhhCCCCCCC
Confidence 578999 777888888888999889999999999998 7999998899999999997 788999999999988764 79
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCCc-ccHHHHHHHHhhcCHHHHHHhh---CCC---CCccccccchhh
Q 022242 138 VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT---GEDHIGKVSFPP 210 (300)
Q Consensus 138 ~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~-~~~~~~~~l~k~~t~~~~~~~~---g~~---~~~~~g~~~YP~ 210 (300)
++++++++++++++|+|||+||+++.||.||+|..+ .+|..++++++++|+++|+++. ++. .++++|+|+||+
T Consensus 88 ~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i~~g~~~YP~ 167 (364)
T 2cya_A 88 MDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPL 167 (364)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSCHHHHHTTC------CCGGGSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCccchhhhhHH
Confidence 999999999999999999999999999999999865 5788889999999999999874 322 247899999999
Q ss_pred hhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCC---------------CC
Q 022242 211 VQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ET 275 (300)
Q Consensus 211 lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g---------------~g 275 (300)
||||| ++.+++ +++|+|.||+||++++||+|+|+|+++|..+++++||+|+| +|
T Consensus 168 LQaaD--------il~~~~---~~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g 236 (364)
T 2cya_A 168 MQVSD--------IFYMDL---DIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAE 236 (364)
T ss_dssp HHHHH--------HHHTTC---SEEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEECCCBCSSCC----------------
T ss_pred HHHhh--------HHhcCC---CEEeccchHHHHHHHHHHHHHHcCCCCceeeccceeeCCCcccccccccccccccccc
Confidence 99996 555665 67899999999999999999999999999999999999997 57
Q ss_pred CccccCCCCCeeecCCCHHHHhccC
Q 022242 276 GKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 276 ~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
+|||||+++|+|||+|+|++|++||
T Consensus 237 ~KMSKS~~~~~I~L~d~p~~i~~Ki 261 (364)
T 2cya_A 237 VKMSKSKPETAVFVVDSDDDIRRKI 261 (364)
T ss_dssp CBCCSSSGGGSCBTTCCHHHHHHHH
T ss_pred cccCCCCCCCEeeccCCHHHHHHHH
Confidence 9999998789999999999999996
No 14
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=7.6e-53 Score=401.75 Aligned_cols=227 Identities=21% Similarity=0.301 Sum_probs=187.6
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhh-hHHHHHHHHHHHhCCCeEEEEEeccccccccC--C
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGh-li~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~--l 136 (300)
.+++||+ ..+.+.+++.+.+++++++++|+||+||| +||||| +++++.++|||++ |+.++++|||+|+++.++ .
T Consensus 16 ~l~~r~~-~e~~~~~~L~~~L~~~~~~~vy~G~~PTg-~lHlGhyl~~l~~~~~lQ~~-G~~~~~~i~D~~a~~~~~~~~ 92 (348)
T 2j5b_A 16 TQLLSIA-EECETLDRLKQLVDSGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIEC-GGQMIIYIADWFAKMNLKMNG 92 (348)
T ss_dssp HHHHTTC-SEESCHHHHHHHHHHTCCEEEEEEECCCS-SCBHHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTGGGG
T ss_pred HHHHcCc-ccccCHHHHHHHHhcCCCCEEEeccCCCC-CCchhHHHHHHHHHHHHHHc-CCcEEEEeccchhhhCCCCCC
Confidence 5688996 33333444444445577999999999997 999999 6788899999997 889999999999988765 6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCC--cccHHHHHHHHhhcCHHHHHHh---hCCC--CCccccccchh
Q 022242 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGI---FGFT--GEDHIGKVSFP 209 (300)
Q Consensus 137 ~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~--~~~~~~~~~l~k~~t~~~~~~~---~g~~--~~~~~g~~~YP 209 (300)
+++++++++++++++|+|+|+||+++.||.||+|.. ..+|..+.++++++++++|+++ .++. +++|+|+|+||
T Consensus 93 ~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~~~~~~~m~~~~~~~~r~~~~~i~~g~f~YP 172 (348)
T 2j5b_A 93 DINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYP 172 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-----------------CCHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHhheeHHHHHhhhhhhhhhccCCcChHHHhhH
Confidence 999999999999999999999999999999999842 2678888899999999999975 3432 46799999999
Q ss_pred hhhcCCCCCCCccccccC---CCCcceeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCe
Q 022242 210 PVQAVPSFPSSFPHLFSG---KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 286 (300)
Q Consensus 210 ~lQaad~~~~~f~~i~~~---~~~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~sa 286 (300)
+|||||+ +.+ ++ +++|+|.||+||++++||+|+|+|+..|.++++++||+|+|+.+|||||.|+|+
T Consensus 173 ~lQaaDi--------l~~~~~~~---~~~~~G~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~ 241 (348)
T 2j5b_A 173 CMQAADV--------FELVPEGI---DICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGA 241 (348)
T ss_dssp HHHHHHH--------HHSSTTCC---SEECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGS
T ss_pred HHHHHHH--------HHHhcCCC---cEEEeccChHHHHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCCCCe
Confidence 9999975 444 44 678999999999999999999999999999999999999864579999998899
Q ss_pred eecCCCHHHHhccC
Q 022242 287 IYVTDSAKAIKNKV 300 (300)
Q Consensus 287 I~L~D~p~~i~~KI 300 (300)
|||+|+|++|++||
T Consensus 242 I~L~d~p~~i~kKI 255 (348)
T 2j5b_A 242 IFMDDTEQEVSEKI 255 (348)
T ss_dssp CBTTCCHHHHHHHH
T ss_pred EeecCCHHHHHHHH
Confidence 99999999999997
No 15
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=9.9e-53 Score=409.87 Aligned_cols=229 Identities=14% Similarity=0.146 Sum_probs=199.4
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC----
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---- 135 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~---- 135 (300)
.|++||++++|++++++.+.+++ +++++|+||+|||++|||||+++++.++|||++ |+.++++|||.|+.+.++
T Consensus 8 ~L~~RG~~~~~~~~e~L~~~L~~-~~~~iy~G~dPTg~sLHLGhlv~l~~l~~lQ~~-G~~~i~lIgD~ta~igdpsk~~ 85 (432)
T 2jan_A 8 ELSWRGLIAQSTDLDTLAAEAQR-GPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRA-GHRPIVLAGGATGMIGDPRDVG 85 (432)
T ss_dssp HHHHHTCCSEESCHHHHHHHHHH-SCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHHCCCCTT
T ss_pred HHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCcCHHHHHHHHHHHHHHHC-CCcEEEEEcCcEEEccCCcccc
Confidence 78999999999999999888874 789999999999988999999999999999997 677788888877766543
Q ss_pred ----CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEeccccCCcccHHHHHH-HHhhcCHHHHHHhhCC-----CCCcc
Q 022242 136 ----LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF-----TGEDH 202 (300)
Q Consensus 136 ----l~~e~i~~~~~~~---~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~~~g~-----~~~~~ 202 (300)
++.+++++|++++ ++.|+|+|+||+++.||+|++|+++..+..+++ +++++|+++|+++..+ .+++|
T Consensus 86 ~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~~~~~is 165 (432)
T 2jan_A 86 ERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGEGIS 165 (432)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHTSTTCCB
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhhcCCCcc
Confidence 8899999999654 777899999999999999999998777888887 9999999999997543 45789
Q ss_pred ccccchhhhhcCCCCCCCccccccCCCCccee-eccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccC
Q 022242 203 IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL-IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSAS 281 (300)
Q Consensus 203 ~g~~~YP~lQaad~~~~~f~~i~~~~~~~~cl-vp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS 281 (300)
+|+|+||+|||||+ +.+..+++|. +|+|.||+||++++||+|+|+|..+|+.++.++||+++| +|||||
T Consensus 166 ~~ef~YPlLQaaDi--------l~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG--~KMSKS 235 (432)
T 2jan_A 166 YTEFSYLLLQANDY--------VELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADG--TKFGKS 235 (432)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTS--CBTTBC
T ss_pred hHHHHHHHHHHHHH--------HHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCc--CcCCCC
Confidence 99999999999974 4441122344 479999999999999999999998899999999999997 799999
Q ss_pred CCCCeeecCC---CHHHHhccC
Q 022242 282 DPNSAIYVTD---SAKAIKNKV 300 (300)
Q Consensus 282 ~p~saI~L~D---~p~~i~~KI 300 (300)
.+|++|||+| +|+++++||
T Consensus 236 ~~nsaI~L~d~~tsp~~i~qki 257 (432)
T 2jan_A 236 TGGGSLWLDPQMTSPYAWYQYF 257 (432)
T ss_dssp SSSCBCBSSTTTSCHHHHHHHH
T ss_pred CCCCeEEccCCCCCHHHHHHHH
Confidence 9666999999 999999986
No 16
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=1.6e-51 Score=396.38 Aligned_cols=218 Identities=21% Similarity=0.260 Sum_probs=166.4
Q ss_pred cccccCCHHHHHHHHhcC-CceE----EEEecCCCCCCcchhhhHHHHH-HHHHHHhCCCeEEEEEeccccccccCCCHH
Q 022242 66 VFFAHRDLNDILDAYEKG-EKFY----LYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (300)
Q Consensus 66 i~~~~~d~~~il~~~~~~-~~~~----vytG~~PTg~~lHlGhli~~~~-~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e 139 (300)
|-.+|||++.+++++++| +|++ +|+|++||| .||||||++++. .++||+ ++.++++|||+||++. ..+++
T Consensus 11 ~~~~hrdld~il~~~e~g~~p~~m~~ri~sG~~PTG-~lHLGhyvGal~~~~~LQ~--~~~~~~~IaD~hAlt~-~~~~~ 86 (388)
T 3prh_A 11 IPNPLLGLDSTENLYFQGIDPFTMKQTIFSGIQPSG-SVTLGNYIGAMKQFVELQH--DYNSYFCIVDQHAITV-PQDRL 86 (388)
T ss_dssp ------------------------CCEEEEEECCCS-CCBHHHHHHTHHHHHHTTT--TSEEEEEECHHHHTTS-CCCHH
T ss_pred CCCccCCHHHHHHHHHcCCCCcccCCeEEEeeCCCC-cchHHHHHHHHHHHHHHHc--cCcEEEEEecceeeec-CCCHH
Confidence 557899999999999999 8998 999999999 699999999875 567997 6778999999999876 58999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEeccccCCcccHHHHHHHHhhcCHHHHHHhhCCC------CCccccccchhhhhc
Q 022242 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQA 213 (300)
Q Consensus 140 ~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~------~~~~~g~~~YP~lQa 213 (300)
++++++++++++|+|||+||+|++||.||+|++ .....+.++..++++++.+..+|+ +++++|+|+||+|||
T Consensus 87 ~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~--~~el~w~l~~~~~~~~L~R~~~fk~k~~~~~~~~~g~~~YPvLQA 164 (388)
T 3prh_A 87 ELRKNIRNLAALYLAVGLDPEKATLFIQSEVPA--HAQAGWMMQCVAYIGELERMTQFKDKSKGNEAVVSGLLTYPPLMA 164 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTH--HHHHHHHHHTTSCHHHHHTTC----------CCBHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhHeEEEecccccc--hHHHHHHHHhhccHHHHHhhhhHhHHhhccCCCcchhHhhHHHHH
Confidence 999999999999999999999999999999974 344455677788888877765554 579999999999999
Q ss_pred CCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCC------CCceee---cccccCCCCCCCccccCCC-
Q 022242 214 VPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH------KPALIE---SSFFPALQGETGKMSASDP- 283 (300)
Q Consensus 214 ad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~------kp~~i~---~~~lp~L~g~g~KMSkS~p- 283 (300)
|| |+.+++ |+||||.||+||+++|||+|+|+|+. .|..+. +.++|||+|+++|||||.|
T Consensus 165 AD--------Il~~~a---d~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~ 233 (388)
T 3prh_A 165 AD--------ILLYGT---DLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPN 233 (388)
T ss_dssp HH--------HHTTTC---CEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSS
T ss_pred HH--------HHHhCC---CEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCC
Confidence 95 566766 88999999999999999999999852 243333 4688999886789999997
Q ss_pred -CCeeecCCCHHHHhccC
Q 022242 284 -NSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 284 -~saI~L~D~p~~i~~KI 300 (300)
+|+|||+|+|++|++||
T Consensus 234 ~~n~I~L~D~p~~I~kKI 251 (388)
T 3prh_A 234 QKAYITLLDEPKQLEKKI 251 (388)
T ss_dssp TTSCCBTTCCHHHHHHHH
T ss_pred CCCeeecCCCHHHHHHHH
Confidence 89999999999999997
No 17
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=1.6e-51 Score=400.50 Aligned_cols=228 Identities=15% Similarity=0.186 Sum_probs=196.8
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccc------
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW------ 133 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~------ 133 (300)
.|.+||++++|++++++.+.+++ +++++|+||+|||+||||||+++++.++|||++ |+.++++|||.|+.+.
T Consensus 6 ~L~~Rg~~~~~~~~~~L~~~L~~-~~~~iy~G~dPTg~sLHlGh~v~l~~l~~lQ~~-G~~~i~lIgd~ta~igdpsgk~ 83 (419)
T 2ts1_A 6 ELQWRGLVNQTTDEDGLRKLLNE-ERVTLYCGFDPTADSLHIGHLATILTMRRFQQA-GHRPIALVGGATGLIGDPSGKK 83 (419)
T ss_dssp HHHHHTCCSEESCHHHHHHHHHH-SCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTCS
T ss_pred HHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEcCceeEecCCCCcc
Confidence 78999999999999999888874 689999999999988999999999999999997 6778888888887654
Q ss_pred --cC-CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEeccccCCcccHHHHHH-HHhhcCHHHHHHhhCC----CCCcc
Q 022242 134 --KN-LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGEDH 202 (300)
Q Consensus 134 --r~-l~~e~i~~~~~~~---~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~~~g~----~~~~~ 202 (300)
|+ ++.+++++|+.++ ++.|+++|+||+++.||+|++|+.+..+..+++ +++++|+++|+++.++ .+++|
T Consensus 84 ~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~~~~is 163 (419)
T 2ts1_A 84 SERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGIS 163 (419)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTTTTCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhccCCCcc
Confidence 33 5999999999765 556788999999999999999988777777777 9999999999987543 46899
Q ss_pred ccccchhhhhcCCCCCCCccccccCCCCcceee-ccccCchhHHHHHHHHHHHh-CCCCCceeecccccCCCCCCCcccc
Q 022242 203 IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRI-GYHKPALIESSFFPALQGETGKMSA 280 (300)
Q Consensus 203 ~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clv-p~G~DQd~~~~l~rdla~r~-~~~kp~~i~~~~lp~L~g~g~KMSk 280 (300)
+|+|+||+|||||+ +.+..+++|.+ |+|.||+||++++||+|+|+ |..+|..++.++||+++| +||||
T Consensus 164 ~~ef~YPlLQaaDi--------l~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG--~KMSK 233 (419)
T 2ts1_A 164 FTEFSYMMLQAYDF--------LRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADG--TKFGK 233 (419)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTS--CCTTC
T ss_pred hHHHHHHHHHHHHH--------HHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCc--ccccC
Confidence 99999999999974 43411234555 68999999999999999999 988899999999999997 79999
Q ss_pred CCCCCeeecCC---CHHHHhccC
Q 022242 281 SDPNSAIYVTD---SAKAIKNKV 300 (300)
Q Consensus 281 S~p~saI~L~D---~p~~i~~KI 300 (300)
|. +|+|||+| +|+++++||
T Consensus 234 S~-~naI~L~d~~tsp~~i~qki 255 (419)
T 2ts1_A 234 TE-SGTIWLDKEKTSPYEFYQFW 255 (419)
T ss_dssp CS-SCCCBSSTTTSCHHHHHHHH
T ss_pred CC-CCeEecCCCCCCHHHHHHHH
Confidence 98 78999999 999999986
No 18
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=3.9e-51 Score=392.88 Aligned_cols=227 Identities=16% Similarity=0.234 Sum_probs=196.7
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhH-HHHHHHHHHHhCCCeEEEEEeccccccccC--C
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLV-PFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli-~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~--l 136 (300)
.+++||+.. +.+.++|.+.+++++++++|+||+||| +|||||.+ ..+.+++||++ |+.++++|||+|+++.++ .
T Consensus 32 ~li~r~~~e-~~~~~~L~~~L~~~~~~~iy~G~~PTg-~lHlG~gvl~~~~~~~lQ~~-G~~~~~lIaD~ha~i~d~~~~ 108 (373)
T 3vgj_A 32 NDILSISSE-CIQPDELRVKLLLKRKLICYDGFEPSG-RMHIAQGLLKSIIVNKLTSN-GCTFIFWIADWFAHLNNKMSG 108 (373)
T ss_dssp HHHHHHCSE-EECHHHHHHHHHHCSSCEEEEEECCCS-SCBHHHHHHHHHHHHHHHTT-TCEEEEEECHHHHHHTTGGGG
T ss_pred HHHHcCcce-ecCHHHHHHHHhcCCCceEEeCCCCCC-CceehhhHHHHHHHHHHHHC-CCcEEEEEecceeEecCCCCC
Confidence 568899875 455666777777888999999999999 89999976 33357889997 889999999999988764 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC-C--cccHHHHHHHHhhcCHHHHHHhh---CCC--CCccccccch
Q 022242 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-G--GAFYKNMVKVAKCVTYNKVVGIF---GFT--GEDHIGKVSF 208 (300)
Q Consensus 137 ~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~-~--~~~~~~~~~l~k~~t~~~~~~~~---g~~--~~~~~g~~~Y 208 (300)
+.+++++++.++++.|+|+|+||+|+.||.||+|. + ..+|..++++++++|+++|+++. ++. +++++|+|+|
T Consensus 109 ~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~~~~~~~g~f~Y 188 (373)
T 3vgj_A 109 DLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEGEENYCSQILY 188 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCTTSCCBTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhccCCCChHHHHH
Confidence 89999999999999999999999999999999997 2 35788888999999999999864 333 4799999999
Q ss_pred hhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCC-CCceeecccccCCCCCCCccccCCCCCee
Q 022242 209 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAI 287 (300)
Q Consensus 209 P~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~-kp~~i~~~~lp~L~g~g~KMSkS~p~saI 287 (300)
|+||||| ++.+++ +++|+|.||+||++++||+|+|+|+. +|.++++++||+|++..+|||||.|+|+|
T Consensus 189 PlLQaaD--------il~l~a---d~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I 257 (373)
T 3vgj_A 189 PCMQCAD--------IFFLNV---DICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAI 257 (373)
T ss_dssp HHHHHHH--------HHHTTC---SEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCC
T ss_pred HHHHHhc--------ccccCC---cEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCee
Confidence 9999996 556676 46799999999999999999999986 78888999999994424699999988999
Q ss_pred ecCCCHHHHhccC
Q 022242 288 YVTDSAKAIKNKV 300 (300)
Q Consensus 288 ~L~D~p~~i~~KI 300 (300)
||+|+|++|++||
T Consensus 258 ~L~D~p~~i~~KI 270 (373)
T 3vgj_A 258 FMDDSESDVNRKI 270 (373)
T ss_dssp BTTCCHHHHHHHH
T ss_pred ecCCCHHHHHHHH
Confidence 9999999999997
No 19
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=1.2e-51 Score=394.32 Aligned_cols=230 Identities=15% Similarity=0.163 Sum_probs=181.2
Q ss_pred chhhhhcCcc--cccC-----CHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEecccc
Q 022242 58 PHVFLRRGVF--FAHR-----DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130 (300)
Q Consensus 58 ~~~l~~Rgi~--~~~~-----d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~ 130 (300)
.+.|++||++ ++++ +++++|+..++|+|+++|+||+|||++|||||+++++.++|||++ |+.++++|||.|+
T Consensus 12 ~~~l~~Rg~~~~~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~~l~~~~~lQ~~-G~~~~~lIaD~ha 90 (356)
T 2pid_A 12 LAAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRA-GHNVIALVGGATA 90 (356)
T ss_dssp HHHHHHHTSCCEEECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGG
T ss_pred HHHHHHcCChheeCCccccHHHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHC-CCcEEEEEcccee
Confidence 3489999999 7887 788888766666789999999999977999999999999999997 7888999999998
Q ss_pred cccc--------C-CCHHHHHHHHHHHHHHHHHcCCCCCc-----------eEEEeccccCCcccHHHHHH-HHhhcCHH
Q 022242 131 CMWK--------N-LSVEESQRLARENAKDIIACGFDVTK-----------TFIFSDFDYVGGAFYKNMVK-VAKCVTYN 189 (300)
Q Consensus 131 ~~~r--------~-l~~e~i~~~~~~~~~~iiA~G~dp~k-----------t~I~~ns~~~~~~~~~~~~~-l~k~~t~~ 189 (300)
.+.+ + ++.+++++|+++++++|+|+ +||++ +.|++|++|..+..+..+++ ++++++++
T Consensus 91 l~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~ 169 (356)
T 2pid_A 91 RLGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMG 169 (356)
T ss_dssp GTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHH
T ss_pred eecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHH
Confidence 7653 2 58999999999999999999 88854 89999999987765666665 89999999
Q ss_pred HHHHhhCC------CCCccccccchhhhhcCCCCCCCccccccCCCCcce-eeccccCchhHHHHHHHHHHHhCCCCCce
Q 022242 190 KVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIGYHKPAL 262 (300)
Q Consensus 190 ~~~~~~g~------~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~c-lvp~G~DQd~~~~l~rdla~r~~~~kp~~ 262 (300)
+|.++.++ .+++|+|+|+||+|||||+ +.+..+++| ++|||.||+||++++||+|+|+|..+|+.
T Consensus 170 ~m~~~~~~k~r~~~~~~is~g~f~YPvLQAaDi--------l~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~ 241 (356)
T 2pid_A 170 TLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDF--------YYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFG 241 (356)
T ss_dssp HHHHCHHHHHHHTSTTCCBHHHHHHHHHHHHHH--------HHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEE
T ss_pred HHhcchHHHHhhccCCCCchHHHHHHHHHHHHH--------HHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccc
Confidence 99998654 3478999999999999964 444111123 55899999999999999999999988999
Q ss_pred eecccccCCCCCCCccccCCCCCeeecCC---CHHHHhccC
Q 022242 263 IESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKV 300 (300)
Q Consensus 263 i~~~~lp~L~g~g~KMSkS~p~saI~L~D---~p~~i~~KI 300 (300)
++.++||+|+| +|||||. +|+|||+| +|++|++||
T Consensus 242 l~~pll~~ldG--~KMSKS~-~naI~L~d~~tsp~~i~~ki 279 (356)
T 2pid_A 242 ITVPLITSTTG--AKLGKSA-GNAVWLNRDKTSPFELYQFF 279 (356)
T ss_dssp EEECCCC----------------CCBSSTTTSCHHHHHHHH
T ss_pred cccccccCCCc--ccccCCC-CCeeeccCCCCCHHHHHHHH
Confidence 99999999997 7999997 88999999 999999986
No 20
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=9e-51 Score=396.68 Aligned_cols=225 Identities=19% Similarity=0.220 Sum_probs=185.5
Q ss_pred chhhhhcCc--ccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC
Q 022242 58 PHVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135 (300)
Q Consensus 58 ~~~l~~Rgi--~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~ 135 (300)
.+.+++||+ +++|++++++ +++++++++|+||+|||++|||||+++++.++|||++ |+.++++|||+|+++.++
T Consensus 11 ~~~li~Rg~~e~~~~~~L~~~---L~~~~~~~vy~G~dPTg~sLHlGh~v~l~~l~~lQ~~-G~~~i~lIgD~ta~igdp 86 (432)
T 1h3f_A 11 ALALLKRGAEEIVPEEELLAK---LKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQEL-GHKVVLIIGDFTGMIGDP 86 (432)
T ss_dssp HHHHHHTTCSEEETHHHHHHH---HHTCSCCEEEEEECTTCCSCBHHHHHHHHHHHHHHHT-TCEEEEEECCCC------
T ss_pred HHHHHHcchHHhCCHHHHHHH---HhcCCCcEEEEcccCCCCCCchhhHHHHHHHHHHHHC-CCCEEEEEccceEEecCC
Confidence 568899999 4555555544 4567899999999999988999999999999999997 788999999999987643
Q ss_pred ---------CCHHHHHHHHHHHHHHHHHcCCC--CCceEEEeccccCCcccHHHHHHHHhhcCHHHHHHhhCC------C
Q 022242 136 ---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------T 198 (300)
Q Consensus 136 ---------l~~e~i~~~~~~~~~~iiA~G~d--p~kt~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~------~ 198 (300)
++.+++++|+.++.+.+. +|+| |+++.||+||+|.++..|..++++++++|+++|+++.++ .
T Consensus 87 sgk~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~~ 165 (432)
T 1h3f_A 87 SGRSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAG 165 (432)
T ss_dssp ---------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHTT
T ss_pred CCcccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhcC
Confidence 568889888766655544 7888 999999999999988899999999999999999876544 3
Q ss_pred CCccccccchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCcc
Q 022242 199 GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKM 278 (300)
Q Consensus 199 ~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KM 278 (300)
+++|+|+|+||+||||| ++.+++ +++|+|.||++|++++||+++|+|..+++.+++++||+|+| .+||
T Consensus 166 ~~is~~ef~YPlLQaaD--------il~l~~---~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG-~~KM 233 (432)
T 1h3f_A 166 IPISLHELLYPFAQAYD--------SVAIRA---DVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDG-REKM 233 (432)
T ss_dssp CCCBGGGGTHHHHHHHH--------HHHHTC---SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTS-SSBC
T ss_pred CCCCccccchhhHHhhh--------hhhcCc---cEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCC-cccc
Confidence 67999999999999996 455554 67799999999999999999999988888899999999998 3599
Q ss_pred ccCCCCCeeecCCCHHHHhccC
Q 022242 279 SASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 279 SkS~p~saI~L~D~p~~i~~KI 300 (300)
|||. +|+|||+|+|++|++||
T Consensus 234 SKS~-~n~I~L~dsp~~i~~Ki 254 (432)
T 1h3f_A 234 SKSL-DNYIGLTEPPEAMFKKL 254 (432)
T ss_dssp CGGG-TCCCBTTSCHHHHHHHH
T ss_pred CcCC-CCeeCCCCCHHHHHHHH
Confidence 9999 66999999999999986
No 21
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=1.9e-50 Score=393.43 Aligned_cols=227 Identities=19% Similarity=0.277 Sum_probs=198.8
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccc------
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW------ 133 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~------ 133 (300)
.|++||++++|++.+++.+.+++ +++++|+||+|||+||||||+++++.++|||++ |+.++++|||.|+.+.
T Consensus 8 ~l~~Rg~~~~~~~~~~L~~~L~~-~~~~iy~G~dPTg~sLHlGh~v~l~~~~~lQ~~-G~~~~~lIgd~ta~igdp~gk~ 85 (420)
T 1jil_A 8 DLKWRGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEH-GHRPIVLIGGGTGMIGDPSGKS 85 (420)
T ss_dssp HHHHTTCCCCBSCHHHHHHHHHH-SCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTCS
T ss_pred HHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEcCceeEecCCCccc
Confidence 78999999999998888877764 689999999999988999999999999999997 6778888888887664
Q ss_pred --cC-CCHHHHHHHHHHHHHHHHHcCCCC---CceEEEeccccCCcccHHHHHH-HHhhcCHHHHHHhhCC----CCCcc
Q 022242 134 --KN-LSVEESQRLARENAKDIIACGFDV---TKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGEDH 202 (300)
Q Consensus 134 --r~-l~~e~i~~~~~~~~~~iiA~G~dp---~kt~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~~~g~----~~~~~ 202 (300)
|+ ++.+++++|+.++.+.++++ +|| +++.|++|++|+.+..+..+++ +++++|+++|+++.++ .+++|
T Consensus 86 ~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~~~~is 164 (420)
T 1jil_A 86 EERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGIS 164 (420)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHHTTTCC
T ss_pred cccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhccCCcc
Confidence 33 59999999999999999988 888 9999999999987767777676 9999999999998766 46899
Q ss_pred ccccchhhhhcCCCCCCCccccccCCCCcceee-ccccCchhHHHHHHHHHHHh-CCCCCceeecccccCCCCCCCcccc
Q 022242 203 IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRI-GYHKPALIESSFFPALQGETGKMSA 280 (300)
Q Consensus 203 ~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clv-p~G~DQd~~~~l~rdla~r~-~~~kp~~i~~~~lp~L~g~g~KMSk 280 (300)
+|+|+||+|||||+ +.+..+++|.+ |+|.||+||++++||+|+|+ |..+|..+++++||+++| +||||
T Consensus 165 ~~ef~YplLQaaD~--------l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG--~KMSK 234 (420)
T 1jil_A 165 YTEFTYTILQAIDF--------GHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDG--KKFGK 234 (420)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTS--CBTTB
T ss_pred hHHHHHHHHHHHHH--------HHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCcc--ccccC
Confidence 99999999999974 43412234554 68999999999999999999 988899999999999997 79999
Q ss_pred CCCCCeeecCC---CHHHHhccC
Q 022242 281 SDPNSAIYVTD---SAKAIKNKV 300 (300)
Q Consensus 281 S~p~saI~L~D---~p~~i~~KI 300 (300)
|. +|+|||+| +|+++++||
T Consensus 235 S~-~naI~L~d~~tsp~~i~~ki 256 (420)
T 1jil_A 235 SE-SGAVWLDAEKTSPYEFYQFW 256 (420)
T ss_dssp CS-SSBCBSSTTTSCHHHHHHHH
T ss_pred CC-CCeEecCCCCCCHHHHHHHH
Confidence 99 77999999 999999986
No 22
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=9.2e-50 Score=377.01 Aligned_cols=224 Identities=24% Similarity=0.349 Sum_probs=201.1
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHH
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e 139 (300)
.+++||++..+++ +++.+.+++++++++|+||+||| +|||||+++++..++||++ |+.++++|||+|+++.+..+++
T Consensus 8 ~l~~rg~~e~~~~-~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~l~~l~~~~~lq~~-g~~~~~~i~D~~a~~~d~~~~~ 84 (323)
T 2cyb_A 8 RLITRNAEEVVTE-EELRQLIETKEKPRAYVGYEPSG-EIHLGHMMTVQKLMDLQEA-GFEIIVLLADIHAYLNEKGTFE 84 (323)
T ss_dssp HHHHTTCSEEETH-HHHHHHHHSCSCCEEEEEECCCS-CCBHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTCCCHH
T ss_pred HHHHcCChhhcCH-HHHHHHHhCCCCCEEEECcCCCC-cchHHHHHHHHHHHHHHHC-CCcEEEEECCceeEcCCCCCHH
Confidence 5789999888874 77888888788999999999998 8999999999899999997 7889999999999887646999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEeccccCCc-ccHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccchhhhhcC
Q 022242 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQAV 214 (300)
Q Consensus 140 ~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~-~~~~~~~~l~k~~t~~~~~~~~---g~~-~~~~~g~~~YP~lQaa 214 (300)
++++++++++++|+|+|+||+++.||.||+|... .++..++.+++++|+++++++. ++. ++.++|+|+||++|||
T Consensus 85 ~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~lqaa 164 (323)
T 2cyb_A 85 EIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQAL 164 (323)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSCSSSCBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhccccCCCCchhhhhHHHHHH
Confidence 9999999999999999999999999999999754 5777888899999999999875 432 3459999999999999
Q ss_pred CCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHH
Q 022242 215 PSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 294 (300)
Q Consensus 215 d~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~ 294 (300)
| ++.+++ ++||+|.||+||++++||+|+|+|+++|..+++++||+|+| +||||| ++|+|||+|+|+
T Consensus 165 D--------~l~~~~---~~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pll~~l~G--~KMSKS-~~n~I~l~d~p~ 230 (323)
T 2cyb_A 165 D--------IAHLGV---DLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPE 230 (323)
T ss_dssp H--------HHHTTC---SEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCBCTTS--SBCCTT-TTCSCBTTCCHH
T ss_pred H--------HHhcCC---CEEEechhhHHHHHHHHHHHHhcCCCCceEEecCcccCCCC--CcccCC-cCceeCCCCCHH
Confidence 6 455565 67899999999999999999999999999999999999997 899999 599999999999
Q ss_pred HHhccC
Q 022242 295 AIKNKV 300 (300)
Q Consensus 295 ~i~~KI 300 (300)
+|++||
T Consensus 231 ~i~~Ki 236 (323)
T 2cyb_A 231 EVERKI 236 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 23
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=1.3e-48 Score=375.52 Aligned_cols=224 Identities=21% Similarity=0.279 Sum_probs=184.1
Q ss_pred chhhhhcCc--ccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC
Q 022242 58 PHVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135 (300)
Q Consensus 58 ~~~l~~Rgi--~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~ 135 (300)
...|++||+ ++++++++++|+ + +++++|+||+||| +|||||++++++++|+|++ |+.++++|||+|+++.+.
T Consensus 10 ~~~l~~Rg~~e~~~~~~L~~~L~---~-~~~~vy~G~~PTG-~lHlG~~~~~l~~~~~~q~-g~~~i~~I~D~ha~t~~~ 83 (372)
T 1n3l_A 10 KLHLITRNLQEVLGEEKLKEILK---E-RELKIYWGTATTG-KPHVAYFVPMSKIADFLKA-GCEVTILFADLHAYLDNM 83 (372)
T ss_dssp HHHHHHTTCSEEECHHHHHHHHT---T-SCCEEEEEECCSS-CCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTT
T ss_pred HHHHHHcCCeeecCHHHHHHHHh---c-CCCEEEeCcCCCC-cccHHHHHHHHHHHHHHHC-CCCEEEEEcCCceeeCCC
Confidence 457899997 566666665554 4 6789999999999 9999999999999998985 889999999999988665
Q ss_pred CCHHHHHHHH---HHH-HHH-HHHcCCCCCceEEEecccc-CCcccHHHHHHHHhhcCHHHHHHh----hCCCCCccccc
Q 022242 136 LSVEESQRLA---REN-AKD-IIACGFDVTKTFIFSDFDY-VGGAFYKNMVKVAKCVTYNKVVGI----FGFTGEDHIGK 205 (300)
Q Consensus 136 l~~e~i~~~~---~~~-~~~-iiA~G~dp~kt~I~~ns~~-~~~~~~~~~~~l~k~~t~~~~~~~----~g~~~~~~~g~ 205 (300)
.+.+++.++. .++ +.. ++|||+||+++.||.||+| ....++.+++++++++|+++++++ .++.+++++|+
T Consensus 84 ~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~v~~~~~~~~~g~ 163 (372)
T 1n3l_A 84 KAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSG 163 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhhhhcccCCCccee
Confidence 5555554444 333 444 5899999999999999999 445778888999999999999986 35567889999
Q ss_pred cchhhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCC
Q 022242 206 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 285 (300)
Q Consensus 206 ~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~s 285 (300)
|+||+||||| ++.+++ ++||+|.||++|++++||+++|+++++|..++.++||+|+| +|||||.+|+
T Consensus 164 ~~YP~lQaaD--------il~~~a---~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gldG--~KMSKS~~ns 230 (372)
T 1n3l_A 164 LLYPGLQALD--------EEYLKV---DAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEES 230 (372)
T ss_dssp HHHHHHHHHH--------HHHTTC---SEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSC--C-------CC
T ss_pred eecchHhhcc--------HHHhcC---CEEEcChhHHHHHHHHHHHHHHcCCCCCEEEecCccCCCCc--ccccCCCCCC
Confidence 9999999996 455665 67899999999999999999999999999999999999997 7999999777
Q ss_pred eeecCCCHHHHhccC
Q 022242 286 AIYVTDSAKAIKNKV 300 (300)
Q Consensus 286 aI~L~D~p~~i~~KI 300 (300)
+|||+|+|++|++||
T Consensus 231 ~I~L~d~p~~i~kKi 245 (372)
T 1n3l_A 231 KIDLLDRKEDVKKKL 245 (372)
T ss_dssp SCBTTCCHHHHHHHH
T ss_pred eEeccCCHHHHHHHH
Confidence 999999999999996
No 24
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=7.1e-49 Score=379.24 Aligned_cols=228 Identities=14% Similarity=0.147 Sum_probs=186.6
Q ss_pred hhhhcCccccc-CCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC---
Q 022242 60 VFLRRGVFFAH-RDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (300)
Q Consensus 60 ~l~~Rgi~~~~-~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~--- 135 (300)
.|.+||+++++ ++.+.+.++++ ++++++|+||+|||+|||||||++++.++|||++ |+.++++|||.|+.+.++
T Consensus 39 ~L~~Rg~~~~~~~~~e~l~~ll~-~~~~~vy~G~dPTg~sLHlGhlv~l~~l~~lQ~~-G~~~~~lIgD~haligdpsgk 116 (392)
T 1y42_X 39 LFEERGYVKDTAGTKEHIAELMR-TRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLE-GYKAFTLIGGSTAKIGDPTGR 116 (392)
T ss_dssp HHHHHTCCSCEESCHHHHHHHHH-HCCCEEEEEECCCSSSCBGGGHHHHHHHHHHHHH-TCEEEEEECTTTTTTCCCCC-
T ss_pred HHHHCCcHHhhcCCHHHHHHHHc-CCCCEEEEeecCCCCCccHHHHHHHHHHHHHHHc-CCcEEEEEcCceeEeCCCCCc
Confidence 78999999955 46775555554 5789999999999988999999999999999998 678888999999877533
Q ss_pred ------CCHHHHHHHHHHHHHHHHHc-----------CCC---CCceEEEeccccCCcccHHHHH-HHHhhcCHHHHHHh
Q 022242 136 ------LSVEESQRLARENAKDIIAC-----------GFD---VTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI 194 (300)
Q Consensus 136 ------l~~e~i~~~~~~~~~~iiA~-----------G~d---p~kt~I~~ns~~~~~~~~~~~~-~l~k~~t~~~~~~~ 194 (300)
++.+++++|++++.++++|+ |+| |+++.||+|++|.....+.+++ .+++++++++|+++
T Consensus 117 ~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~ 196 (392)
T 1y42_X 117 LKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSR 196 (392)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSS
T ss_pred chhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhh
Confidence 58889999998887777765 456 7899999999997777777788 59999999999864
Q ss_pred ------hCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceee-ccccCchhHHHHHHHHHHHhCC----------
Q 022242 195 ------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRIGY---------- 257 (300)
Q Consensus 195 ------~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clv-p~G~DQd~~~~l~rdla~r~~~---------- 257 (300)
++..+++|+|+|+||+|||||+ +.+..+++|.+ |+|.||.||++++||+|+|+|.
T Consensus 197 ~~~k~r~~~~~~is~gef~YPlLQAaDi--------l~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~ 268 (392)
T 1y42_X 197 DTVKNKMTQGDGVSFAEFTYPIMQGWDW--------FELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKY 268 (392)
T ss_dssp HHHHHTTSSSSCCCHHHHHHHHHHHHHH--------HHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred hHHHHHhcCCCCcccHHHHHHHHHHHHH--------HHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccc
Confidence 3335689999999999999974 43322233544 7999999999999999999854
Q ss_pred -------CCCceeecccccCCCCCCCccccCCCCCeeecCC---CHHHHhccC
Q 022242 258 -------HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKV 300 (300)
Q Consensus 258 -------~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D---~p~~i~~KI 300 (300)
.+|+.+++++||+|+| +|||||. +|+|||+| +|+++++||
T Consensus 269 ~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~-~naI~L~d~~tsp~~i~qki 318 (392)
T 1y42_X 269 VTPKTALDECVGFTVPLLTDSSG--AKFGKSA-GNAIWLDPYQTSVFDFYGYF 318 (392)
T ss_dssp HSCCSGGGSCEEEECCCCBCTTC--CBTTBCS-SSBCBSSTTTSCHHHHHHHH
T ss_pred cccccccCCccccccccCcCCch--hhccCCC-CCeeeccCCCCCHHHHHHHH
Confidence 4678888999999997 7999998 78999999 999999985
No 25
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=4.6e-48 Score=364.18 Aligned_cols=217 Identities=20% Similarity=0.268 Sum_probs=188.1
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccCCCHH
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e 139 (300)
.|++|| +..+.+.+++.+.++ ++++++|+||+||| +|||||+++++.++|||++ |+.++++|||+|+++.+..+++
T Consensus 5 ~l~~r~-~~e~~~~~~l~~~L~-~~~~~vy~G~~PTg-~lHlGhl~~l~~~~~lQ~~-g~~~~~~i~D~~a~~~~~~~~e 80 (314)
T 2zp1_A 5 EMIKRN-TSEIISEEELREVLK-KDEKSAYIGFEPSG-KIHLGHYLQIKKMIDLQNA-GFDIIILLADLAAYLNQKGELD 80 (314)
T ss_dssp HHHHTT-CSEEETHHHHHHHHT-SSSEEEEEEECCCS-SCBHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTCCCHH
T ss_pred HHHHcC-CeecCCHHHHHHHHc-CCCCEEEEccCCCC-CcchhhHHHHHHHHHHHHC-CCCEEEEEecceEecCCCCCHH
Confidence 568899 555555566655565 68999999999998 8999999999999999997 7899999999999887657999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEeccccCCc-ccHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccchhhhhcC
Q 022242 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQAV 214 (300)
Q Consensus 140 ~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~-~~~~~~~~l~k~~t~~~~~~~~---g~~-~~~~~g~~~YP~lQaa 214 (300)
++++|+.+++++|+|||+| +.|++||+|..+ .+|..+.++++++|+++|+++. ++. +..|+|+|+||+||||
T Consensus 81 ~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~LQaa 157 (314)
T 2zp1_A 81 EIRKIGDYNKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVN 157 (314)
T ss_dssp HHHHHHHHHHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhccCCCCchhhhhHHHHHH
Confidence 9999999999999999998 788889999865 4688888999999999999875 332 2239999999999999
Q ss_pred CCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHH
Q 022242 215 PSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 294 (300)
Q Consensus 215 d~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~ 294 (300)
| ++.+++ +++|+|.||+||++++|++++ ++|..+++++||+|+| .+||||| ++|+|||+|+|+
T Consensus 158 D--------il~~~~---~~v~~G~DQ~~~~~l~R~i~~----~~~~~~~~~~l~~l~G-~~KMSKS-~~~~I~L~d~~~ 220 (314)
T 2zp1_A 158 T--------SHYLGV---DVAVGGMEQRKIHMLARELLP----KKVVCIHNPVLTGLDG-EGKMSSS-KGNFIAVDDSPE 220 (314)
T ss_dssp H--------HHHHTC---SEEEEEGGGHHHHHHHHHHSS----SCCEEEEECCCBCTTS-SSBCCTT-TTCSCBTTCCHH
T ss_pred h--------HHhhCC---CEEEcChhHHHHHHHHHHhcC----CCcEEeeccccccCCc-ccccCCC-CcceecCCCCHH
Confidence 6 455565 678999999999999999987 6898899999999996 4799999 599999999999
Q ss_pred HHhccC
Q 022242 295 AIKNKV 300 (300)
Q Consensus 295 ~i~~KI 300 (300)
+|++||
T Consensus 221 ~i~~KI 226 (314)
T 2zp1_A 221 EIRAKI 226 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999997
No 26
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=1.8e-48 Score=367.97 Aligned_cols=196 Identities=18% Similarity=0.211 Sum_probs=170.0
Q ss_pred ceEEEEecCCCCCCcchhhhHH-HHHHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 022242 85 KFYLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~-~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (300)
..++|+||+||| +|||||+++ +...++||+ |+.++++|||+|+++.+ .+++++++++++++++|+|||+||+|+.
T Consensus 3 ~~~vysG~~PTg-~lHlG~~lg~l~~~~~lQ~--g~~~~~~iaD~ha~~~~-~~~~~l~~~~~~~~~~~lA~Gldp~k~~ 78 (322)
T 3tzl_A 3 AMRVLTGLQPSG-DLHIGNYFGAIKQMVDAQE--KSQMFMFIANYHAMTSS-QDGEKLKQNSLKAAAAFLSLGIDPQKSV 78 (322)
T ss_dssp -CCBEEEECCSS-CCBHHHHHHTHHHHHHTTT--TSCCEEEECHHHHTTTC-CCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred ceEEEEccCCCc-cccHHHHHHHHHHHHHHhc--CCCEEEEEecCeeecCC-CCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 457999999999 899999996 556788999 67889999999997765 6999999999999999999999999999
Q ss_pred EEeccccCCcccHHHHHHHHhhcCHHHHHH------hhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeecc
Q 022242 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (300)
Q Consensus 164 I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~------~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~ 237 (300)
||.||+|++ .....+.++++++++++.+ ++++.+++|+|+|+||+||||| |+.+++ |+|||
T Consensus 79 i~~qS~~~~--~~el~~~l~~~~~~~~l~r~~~~K~~~~~~~~~~~g~f~YP~LQAaD--------il~~~~---~~vpv 145 (322)
T 3tzl_A 79 FWLQSDVKE--VMELYWILSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAAD--------ILLFDT---RIVPV 145 (322)
T ss_dssp EEEGGGCTH--HHHHHHHHGGGCBHHHHHSCHHHHHHHHTTCCCBHHHHHHHHHHHHH--------HHHTTC---SEEEC
T ss_pred EEECCcchh--HHHHHHHHhccCcHHHHHhhhHHHHHHccCCCCchHHHHHHHHHHHH--------HHHhCC---cEEEe
Confidence 999999974 4444556899999998754 3455578999999999999996 555665 88999
Q ss_pred ccCchhHHHHHHHHHHHhCC------CCCceee---cccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 238 AIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 238 G~DQd~~~~l~rdla~r~~~------~kp~~i~---~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
|.||+||+++|||+|+|+|+ ++|..++ +++||+|+| +|||||. +|+|||+|+|++|++||
T Consensus 146 G~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G--~KMSKS~-~n~I~L~d~p~~i~~KI 214 (322)
T 3tzl_A 146 GKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDG--AKMSKSY-QNTIDIFSSEKTLKKQI 214 (322)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTS--SBCCGGG-TCCCBSSCCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCC--CcCCCCC-CCceecCCCHHHHHHHH
Confidence 99999999999999999986 5666555 789999998 8999999 56999999999999996
No 27
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-47 Score=369.36 Aligned_cols=226 Identities=21% Similarity=0.239 Sum_probs=185.3
Q ss_pred hhhhcCcccccCCHHHHHHHHhc-CCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC-CC
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEK-GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LS 137 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~-~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~-l~ 137 (300)
.|++|| +..+.+.+.|.+.+++ ++|+++|+||+||| +|||||++++++.+++|++ |+.++++|+|+|+++.+. .+
T Consensus 14 ~l~~rg-~~e~~~~e~L~~~L~~~~~p~~vy~G~~PTG-~LHlG~~~~al~~~~~~q~-g~~~ii~I~D~ha~t~~~~~~ 90 (394)
T 2dlc_X 14 GLITKN-LQEVLNPQIIKDVLEVQKRHLKLYWGTAPTG-RPHCGYFVPMTKLADFLKA-GCEVTVLLADLHAFLDNMKAP 90 (394)
T ss_dssp HHHHTT-CSEEECHHHHHHHHHTSCSCCEEEEEECCCS-CCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTTSSC
T ss_pred HHHHcC-cceecCHHHHHHHHHccCCCeEEEEEeCCCC-CccHHHHHHHHHHHHHHHc-CCcEEEEEcCCccccCCCCCc
Confidence 578999 6667777888888874 67889999999999 9999999999988888885 888999999999988754 66
Q ss_pred HHHHHHHHH----HHHHHHHHcCCCCCceEEEeccccCC-cccHHHHHHHHhhcCHHHHHHhh----CCCCCccccccch
Q 022242 138 VEESQRLAR----ENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCVTYNKVVGIF----GFTGEDHIGKVSF 208 (300)
Q Consensus 138 ~e~i~~~~~----~~~~~iiA~G~dp~kt~I~~ns~~~~-~~~~~~~~~l~k~~t~~~~~~~~----g~~~~~~~g~~~Y 208 (300)
.+.++.++. ...+.|+|||+||+++.||.||+|.. ..++.+++++++++|++++++.- ++.+++++|+|+|
T Consensus 91 ~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~~r~~~~~~~g~~~Y 170 (394)
T 2dlc_X 91 LEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGLIY 170 (394)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhhhcccCCccceeeec
Confidence 777777753 23346789999999999999999964 45778888999999999998762 3356789999999
Q ss_pred hhhhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeee
Q 022242 209 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 288 (300)
Q Consensus 209 P~lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~ 288 (300)
|+||||| ++.++. .++|+|.||.+|++++||+++|+|+++|..+++++||+|++ |+|||||.++++||
T Consensus 171 P~lQaaD--------~l~~~~---~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gl~~-G~KMSKS~~ns~I~ 238 (394)
T 2dlc_X 171 PLMQALD--------EQFLDV---DCQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQ-GGKMSASDPNSKID 238 (394)
T ss_dssp HHHHHHH--------HHHTTC---SEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCCC-----------CCSCB
T ss_pred hhHhhcc--------HhhhCC---CEEecCccHHHHHHHHHHHHHHcCCCCCEEEecccccCCCC-CCcCCCCCCCCEEe
Confidence 9999996 444555 46789999999999999999999999999999999999993 48999999777899
Q ss_pred cCCCHHHHhccC
Q 022242 289 VTDSAKAIKNKV 300 (300)
Q Consensus 289 L~D~p~~i~~KI 300 (300)
|+|+|++|++||
T Consensus 239 L~D~p~~i~kKI 250 (394)
T 2dlc_X 239 LLEEPKQVKKKI 250 (394)
T ss_dssp TTCCHHHHHHHH
T ss_pred ccCCHHHHHHHH
Confidence 999999999997
No 28
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=5.4e-47 Score=387.94 Aligned_cols=226 Identities=21% Similarity=0.270 Sum_probs=194.2
Q ss_pred hhhcCcccccCCHHHHHHHHhcCCceEEEEecCCCCCCcchhhhHHHH-HHHHHHHhCCCeEEEEEeccccccccC--CC
Q 022242 61 FLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKN--LS 137 (300)
Q Consensus 61 l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~PTg~~lHlGhli~~~-~~~~lQ~~~~~~v~I~I~D~~~~~~r~--l~ 137 (300)
+++||... +.+.++|.+++++++++++|+||+||| +|||||+++.. .+++||++ |+.++++|||+|+++.++ .+
T Consensus 17 ~~~~~~~e-~~~~~eL~~~L~~~~~~~vy~G~~PTg-~lHLG~~v~~~~~~~~lQ~~-G~~~~~lIaD~ha~~~d~~~~~ 93 (690)
T 3p0j_A 17 LLRSVGEE-CIQESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTAA-GCEFVFWVADWFALMNDKVGGE 93 (690)
T ss_dssp HHHHTCSE-EECHHHHHHHHHHCTTEEEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGGGGCTTTTH
T ss_pred HHhhCcee-ecCHHHHHHHHhcCCCceEEeeecCCC-cchhHhhHHHHHHHHHHHHC-CCcEEEEEeeeEEEecCCCcch
Confidence 56777665 445677888888888999999999999 89999977643 57789997 889999999999988764 78
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCCc---ccHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccchhh
Q 022242 138 VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG---AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPP 210 (300)
Q Consensus 138 ~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~---~~~~~~~~l~k~~t~~~~~~~~---g~~-~~~~~g~~~YP~ 210 (300)
.+++++++++++++|+|+|+||+|+.||.||+|... .+|..++++++++|+++|+++. ++. .++++|+|+||+
T Consensus 94 ~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~~~i~~g~f~YPl 173 (690)
T 3p0j_A 94 LEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPL 173 (690)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-------CCCCCSCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhccCCCchhhHhhHH
Confidence 999999999999999999999999999999997642 5788888999999999999864 332 248999999999
Q ss_pred hhcCCCCCCCccccccCCCCcceeeccccCchhHHHHHHHHHHHhCCC-CCceeecccccCCCCCCCccccCCCCCeeec
Q 022242 211 VQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYV 289 (300)
Q Consensus 211 lQaad~~~~~f~~i~~~~~~~~clvp~G~DQd~~~~l~rdla~r~~~~-kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L 289 (300)
||||| ++.+++ +++|||.||+||++++||+|+|+|+. +|.++++++||+|++..+|||||.++|+|||
T Consensus 174 LQAaD--------il~~~a---d~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L 242 (690)
T 3p0j_A 174 MQCCD--------IFFLKA---DICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFM 242 (690)
T ss_dssp HHHHH--------HHHTTC---SEECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBT
T ss_pred HHHHH--------HHhhCC---CEEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeec
Confidence 99996 556666 57899999999999999999999986 7888899999999543479999997799999
Q ss_pred CCCHHHHhccC
Q 022242 290 TDSAKAIKNKV 300 (300)
Q Consensus 290 ~D~p~~i~~KI 300 (300)
+|+|++|++||
T Consensus 243 ~D~p~~i~kKI 253 (690)
T 3p0j_A 243 EDTEEDVARKI 253 (690)
T ss_dssp TCCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 99999999996
No 29
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=3.1e-47 Score=362.03 Aligned_cols=198 Identities=20% Similarity=0.299 Sum_probs=163.5
Q ss_pred ceEEEEecCCCCCCcchhhhHHHHHHHH--HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 022242 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~~~~~~~--lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt 162 (300)
..++|+|++||| .|||||+++++ .+| ||+. +.++|+|||+||+++ ..+++++++++++++++|+|||+||+|+
T Consensus 15 ~~~i~sG~~PTG-~lHLGh~vg~l-~~~~~lQ~~--~~~~~~iaD~hA~t~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 89 (346)
T 3n9i_A 15 KPIVFSGAQPSG-ELTIGNYMGAL-RQWVQMQDD--YDCIYCIVDLHAITA-RQDPALLRKRTLDTLALYLACGIDPKKS 89 (346)
T ss_dssp CCEEEEEECSCS-CCBHHHHHHTH-HHHHTTTTT--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHHTCCTTTS
T ss_pred CCEEEECcCCCC-cccHHHHHHHH-HHHHHHHhh--CcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 357999999999 69999999985 666 8984 678999999999876 4899999999999999999999999999
Q ss_pred EEEeccccCCc--ccHHH-----HHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceee
Q 022242 163 FIFSDFDYVGG--AFYKN-----MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 235 (300)
Q Consensus 163 ~I~~ns~~~~~--~~~~~-----~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clv 235 (300)
+||.||+|+++ .+|.. +.++.|+.++++...+. .+++++|+|+||+||||| |+.+++ |+|
T Consensus 90 ~if~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~--~~~~~~g~~~YP~lQAaD--------il~~~a---d~v 156 (346)
T 3n9i_A 90 TIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARY--AENINAGLFDYPVLMAAD--------ILLYQT---NQV 156 (346)
T ss_dssp EEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHS--GGGCBHHHHHHHHHHHHH--------HHTTTC---SEE
T ss_pred EEEeccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhcc--CCCCCchhHHhHHHHHHH--------HHHhCc---eEE
Confidence 99999999753 23321 23455555555444432 257899999999999996 556665 899
Q ss_pred ccccCchhHHHHHHHHHHHhCC------CCCceee---cccccCCCCCCCccccCCCC--CeeecCCCHHHHhccC
Q 022242 236 PCAIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKV 300 (300)
Q Consensus 236 p~G~DQd~~~~l~rdla~r~~~------~kp~~i~---~~~lp~L~g~g~KMSkS~p~--saI~L~D~p~~i~~KI 300 (300)
|||.||+||+++|||+|+|+|+ +.|..+. ++++|||+++++|||||.|+ |+|||+|+|++|++||
T Consensus 157 pvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI 232 (346)
T 3n9i_A 157 PVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKI 232 (346)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHH
T ss_pred EeccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHH
Confidence 9999999999999999999983 3565444 37899997645799999986 9999999999999997
No 30
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=4.8e-47 Score=361.69 Aligned_cols=199 Identities=21% Similarity=0.267 Sum_probs=164.1
Q ss_pred CceEEEEecCCCCCCcchhhhHHHHHHHH--HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 022242 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTK 161 (300)
Q Consensus 84 ~~~~vytG~~PTg~~lHlGhli~~~~~~~--lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~k 161 (300)
.++++|+|++||| +|||||+++++ .+| ||+ ++.++++|||+|+++.+ .+++++++++++++++|+|+|+||++
T Consensus 3 ~~~~i~sG~~PTG-~lHLGn~vg~l-~~~~~lQ~--~~~~~~~IaD~ha~~~~-~d~~~i~~~~~~~~~~~lA~Gldp~k 77 (348)
T 2yy5_A 3 MMKRALTGIQASG-KQHLGNYLGVM-QSLIELQE--QCQLFVFVADLHSITVD-FQPQALKQNNFDLVRTLLAVGLDPQK 77 (348)
T ss_dssp -CCEEEEEECCCT-TCBHHHHHHTG-GGHHHHHH--HSEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTT
T ss_pred CCeEEEEeeCCCC-cccHHHHHHHH-HHHHHHHh--CCcEEEEEcChhhccCC-CCHHHHHHHHHHHHHHHHHhCCChhH
Confidence 3578999999998 99999999885 566 998 46789999999998765 89999999999999999999999999
Q ss_pred eEEEeccccCCcccHHHHHHHHhhcCHHHHHHh---------hCC----CCCccccccchhhhhcCCCCCCCccccccCC
Q 022242 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI---------FGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 228 (300)
Q Consensus 162 t~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~---------~g~----~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~ 228 (300)
+.||.||+|+++ ....+.++...+++++.+. .+| .+++++|+|+||+||||| ++.++
T Consensus 78 ~~if~qS~~~~~--~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaD--------il~~~ 147 (348)
T 2yy5_A 78 ACLFLQSDLLEH--SMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGD--------ILLYQ 147 (348)
T ss_dssp EEEEEGGGCHHH--HHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHH--------HHTTC
T ss_pred eEEEECCcccch--hHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHH--------HHHhC
Confidence 999999999642 2222233444455544442 221 457999999999999996 55566
Q ss_pred CCcceeeccccCchhHHHHHHHHHHHhC------CCCCceee---cccccCCCCCCCccccCCCCC--eeecCCCHHHHh
Q 022242 229 DHLRCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIE---SSFFPALQGETGKMSASDPNS--AIYVTDSAKAIK 297 (300)
Q Consensus 229 ~~~~clvp~G~DQd~~~~l~rdla~r~~------~~kp~~i~---~~~lp~L~g~g~KMSkS~p~s--aI~L~D~p~~i~ 297 (300)
+ |+||||.||+||++++||+|+|+| +++|..++ +++||+|+|+.+|||||.+|+ +|||+|+|++|+
T Consensus 148 a---~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~ 224 (348)
T 2yy5_A 148 P---DIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVV 224 (348)
T ss_dssp C---SEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHH
T ss_pred c---cEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHH
Confidence 5 889999999999999999999997 56787777 699999999778999999664 999999999999
Q ss_pred ccC
Q 022242 298 NKV 300 (300)
Q Consensus 298 ~KI 300 (300)
+||
T Consensus 225 ~KI 227 (348)
T 2yy5_A 225 KKI 227 (348)
T ss_dssp HHH
T ss_pred HHH
Confidence 997
No 31
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-47 Score=361.06 Aligned_cols=199 Identities=23% Similarity=0.308 Sum_probs=169.2
Q ss_pred CceEEEEecCCCCCCcchhhhHHHH-HHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 022242 84 EKFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (300)
Q Consensus 84 ~~~~vytG~~PTg~~lHlGhli~~~-~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt 162 (300)
...++|+|++||| +|||||++|++ ..++||++ |+.++++|||+|+++.+..+++++++++++|+++|+|||+||+|+
T Consensus 11 ~~~~v~~G~~PTG-~lHLGn~~g~l~~~~~lQ~~-G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~ 88 (340)
T 2g36_A 11 HHMRILSGMRPTG-KLHIGHLVGALENWVKLQEE-GNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKS 88 (340)
T ss_dssp -CCEEEEEECCCS-SCBHHHHHTHHHHHHHHHHT-TCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTS
T ss_pred CCCeEEEeeCCCC-cccHHhHHHHHHHHHHHHHC-CCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHe
Confidence 3578999999999 99999999876 55669997 688899999999988755778889999999999999999999999
Q ss_pred EEEeccccCCcccHHHHHHHHhhcCHHHHHHhhC---------CCCCccccccchhhhhcCCCCCCCccccccCCCCcce
Q 022242 163 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFG---------FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 233 (300)
Q Consensus 163 ~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g---------~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~c 233 (300)
.||.||+|++ +....+.+++.+|++++.+... ..+++|+|+|+||+||||| ++.+++ |
T Consensus 89 ~if~qS~~~~--~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAaD--------il~~~~---~ 155 (340)
T 2g36_A 89 VIFVQSGVKE--HAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAAD--------ILIYKA---E 155 (340)
T ss_dssp EEEEGGGCTH--HHHHHHHHHTTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHHHHH--------HHTTTC---S
T ss_pred EEEECCchHH--HHHHHHHHHccCCHHHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHhh--------HHHhCC---C
Confidence 9999999963 4444556899999998876532 2347899999999999996 455665 8
Q ss_pred eeccccCchhHHHHHHHHHHHhCC------CCCcee--ecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 234 LIPCAIDQDPYFRMTRDVAPRIGY------HKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 234 lvp~G~DQd~~~~l~rdla~r~~~------~kp~~i--~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
+||+|.||+||++++||+|+|+|+ ++|..+ ++++||+|+| +|||||. +|+|||+|+|++|++||
T Consensus 156 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG--~KMSKS~-~n~I~L~dsp~~i~~Ki 227 (340)
T 2g36_A 156 GVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDG--RKMSKSY-GNIINLEISEKELEQTI 227 (340)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTS--SCCCGGG-TCCCBTTCCHHHHHHHH
T ss_pred EEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCc--cccCCCC-CCeEeeeCCHHHHHHHH
Confidence 899999999999999999999873 467644 4799999997 5999999 56999999999999996
No 32
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=1e-46 Score=358.01 Aligned_cols=198 Identities=18% Similarity=0.203 Sum_probs=169.0
Q ss_pred EEEEecCCCCCCcchhhhHHHH-HHHHHHHhCCCeEEEEEeccccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 022242 87 YLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFI 164 (300)
Q Consensus 87 ~vytG~~PTg~~lHlGhli~~~-~~~~lQ~~~~~~v~I~I~D~~~~~~r~-l~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (300)
++|+||+||| +|||||+++++ ...+||+++++.++++|||+|+++.++ .+++++++++++++++|+|+|+||+++.|
T Consensus 3 ~vy~G~~PTg-~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 3 RVLSGIQPSG-EIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CEEEEECSCS-CCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred EEEEeeCCCC-cccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 6999999998 79999999885 345589983277899999999977653 78999999999999999999999999999
Q ss_pred EeccccCCcccHHHHHHHHhhcCHHHHHHhhC------CCCCccccccchhhhhcCCCCCCCccccccCCCCcceeeccc
Q 022242 165 FSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFG------FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 238 (300)
Q Consensus 165 ~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g------~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~G 238 (300)
|+||+|++ +......+++.++++++.+... ..+++|+|+|+||+||||| ++.+++ |+||+|
T Consensus 82 ~~qS~~~~--~~el~~~l~~~~~~~~l~r~~~~k~r~~~~~~~~~g~f~YPvLQaaD--------il~~~~---~lvp~G 148 (337)
T 2el7_A 82 FVQSHVPE--HTELSWVFTTLTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQAAD--------ILIYKA---DTVPVG 148 (337)
T ss_dssp EEGGGSTH--HHHHHHHHHHTSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHHHHH--------HHHTTC---CEEECC
T ss_pred EEcCcchh--hHHHHHHHHccCCHHHHHHhHHHHHHhccCCCCChHHHHhHHHHHhh--------HHhhCC---cEEEcc
Confidence 99999974 3333445888888888877632 3468999999999999996 455665 889999
Q ss_pred cCchhHHHHHHHHHHHhC------CCCCceeec---ccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 239 IDQDPYFRMTRDVAPRIG------YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 239 ~DQd~~~~l~rdla~r~~------~~kp~~i~~---~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
.||+||++++||+|+|+| +++|..+++ ++||+|+| .+|||||.+ |+|||+|+|++|++||
T Consensus 149 ~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~-n~I~L~d~p~~i~~Ki 217 (337)
T 2el7_A 149 EDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLG-NTIGLLEPEESIWQKI 217 (337)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTT-CCCBSSSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCC-ccccCCCCC-CeeeCcCCHHHHHHHH
Confidence 999999999999999985 467887775 79999998 689999994 5999999999999996
No 33
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=8.6e-47 Score=357.38 Aligned_cols=196 Identities=22% Similarity=0.333 Sum_probs=162.9
Q ss_pred eEEEEecCCCCCCcchhhhHHHHHHHH--HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~~~~--lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (300)
.++|+|++||| +|||||+++++ .+| ||+ |+.++++|||+|+++. +.+++++++++++++++|+|||+||+++.
T Consensus 2 ~~vysG~~PTG-~lHlGn~vg~l-~~~~~lQ~--g~~~~~~IaD~ha~~~-~~~~e~i~~~~~~~~~~~la~Gldp~k~~ 76 (328)
T 1i6k_A 2 KTIFSGIQPSG-VITIGNYIGAL-RQFVELQH--EYNCYFCIVDQHAITV-WQDPHELRQNIRRLAALYLAVGIDPTQAT 76 (328)
T ss_dssp CEEEEEECCCS-CCBHHHHHHTH-HHHHHHTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEE
T ss_pred CEEEEeeCCCC-cccHHHHHHHH-HHHHHHHc--CCcEEEEEeCceeecC-CCCHHHHHHHHHHHHHHHHHhCCChhhcE
Confidence 37999999998 99999999886 555 687 5678999999999887 68999999999999999999999999999
Q ss_pred EEeccccCCc--ccHH-H----HHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeec
Q 022242 164 IFSDFDYVGG--AFYK-N----MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (300)
Q Consensus 164 I~~ns~~~~~--~~~~-~----~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp 236 (300)
||.||+|+++ ..|. . +.++.++.++++..++ .+++++|+|+||+||||| ++.+++ |+||
T Consensus 77 if~qS~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~---~~~~~~g~f~YPvLQaaD--------il~~~~---~~vp 142 (328)
T 1i6k_A 77 LFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG---KEAVSAGLLTYPPLMAAD--------ILLYNT---DIVP 142 (328)
T ss_dssp EEEGGGCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT---CSSCCHHHHTHHHHHHHH--------HHTTTC---SEEE
T ss_pred EEecCchhhhhHHHHHHhccccHHHHHHHHHHHHHHhc---cCCCCchhhccHHHHHHH--------HHHhCC---CEEe
Confidence 9999999642 1111 1 2244555554443332 268999999999999996 555665 7899
Q ss_pred cccCchhHHHHHHHHHHHhC------CCCCceee---cccccCCCCCCCccccCCCCCe--eecCCCHHHHhccC
Q 022242 237 CAIDQDPYFRMTRDVAPRIG------YHKPALIE---SSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKV 300 (300)
Q Consensus 237 ~G~DQd~~~~l~rdla~r~~------~~kp~~i~---~~~lp~L~g~g~KMSkS~p~sa--I~L~D~p~~i~~KI 300 (300)
+|.||+||++++||+|+|+| +++|..++ +++||+|+|+.+|||||.+|++ |||+|+|++|++||
T Consensus 143 vG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI 217 (328)
T 1i6k_A 143 VGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKI 217 (328)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHH
Confidence 99999999999999999998 45676654 6999999997789999997757 99999999999997
No 34
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=1.4e-46 Score=358.89 Aligned_cols=199 Identities=28% Similarity=0.299 Sum_probs=166.4
Q ss_pred CCceEEEEecCCCCCCcchhhhHHHHHHHH--HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 022242 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 160 (300)
Q Consensus 83 ~~~~~vytG~~PTg~~lHlGhli~~~~~~~--lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~ 160 (300)
++++++|+||+||| .||||||++++ .+| ||++ +.++++|||+|+++.++.+++++++|+++++++|+|||+||+
T Consensus 20 ~~~~~vysG~~PTG-~lHLGn~~g~l-~~~~~lQ~~--~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~ 95 (351)
T 1yi8_B 20 PARPRVLTGDRPTG-ALHLGHLAGSL-QNRVRLQDE--AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQ 95 (351)
T ss_dssp -CCSEEEEEECCSS-CCBHHHHHHTH-HHHHHHTSS--SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCcEEEEeeCCCC-CccHHHHHHHH-HHHHHHHHh--CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence 45789999999999 69999999985 667 9986 456889999999876669999999999999999999999999
Q ss_pred ceEEEeccccCCcccHHHHHHHHhhcCHHHHH---------HhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCc
Q 022242 161 KTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV---------GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHL 231 (300)
Q Consensus 161 kt~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~---------~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~ 231 (300)
|+.||.||+|++ +......++..+++++|. ++.||.+++|+|+|+||+||||| ++.+++
T Consensus 96 k~~i~~qS~~~~--~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaD--------il~~~~-- 163 (351)
T 1yi8_B 96 KTTCVVQSAVPE--LAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAAD--------IAAFGA-- 163 (351)
T ss_dssp TEEEEEGGGCTH--HHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHH--------HHHHTC--
T ss_pred hcEEEEcCchhh--HHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhh--------HHhcCC--
Confidence 999999999974 222223355555555544 44567788999999999999996 455665
Q ss_pred ceeeccccCchhHHHHHHHHHHHhC------CCCCceee--cccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 232 RCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 232 ~clvp~G~DQd~~~~l~rdla~r~~------~~kp~~i~--~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
|+||+|.||+||++++||+|+|+| +++|..++ +++||+|+| ++|||||.+ |+|||+|+|++|++||
T Consensus 164 -~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~-n~I~L~d~p~~i~~Ki 237 (351)
T 1yi8_B 164 -TLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLG-NAIALGDSADEVARKV 237 (351)
T ss_dssp -SEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTS-SSCCCTTTT-CCCBTTCCHHHHHHHH
T ss_pred -CEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCC-ccccCCCCC-CeecCCCCHHHHHHHH
Confidence 889999999999999999999986 35776553 789999987 359999994 5999999999999996
No 35
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=9.6e-47 Score=358.31 Aligned_cols=198 Identities=19% Similarity=0.237 Sum_probs=164.2
Q ss_pred eEEEEecCCCCCCcchhhhHHHH-HHHHHHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~-~~~~lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (300)
.++|+|++||| .||||||++++ ...+||+. +.++++|||+||++. ..+++++++++++++++|+|||+||+|++|
T Consensus 7 ~~v~sG~~PTG-~lHLGhy~g~l~~~~~lQ~~--~~~~~~iaD~ha~~~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 82 (341)
T 3sz3_A 7 PIVLSGVQPSG-ELSIGNYLGALRQWQQMQDD--YDCQYCVVDLHAITV-RQDPQALHEATLDALAICLAVGVDPKKSTL 82 (341)
T ss_dssp CEEEEEECSSS-CCBHHHHHHTGGGHHHHHHH--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CEEEeCcCCCC-cccHHHHHHHHHHHHHHHhc--CeEEEEEecceeEcC-CCCHHHHHHHHHHHHHHHHHcCCChhhcEE
Confidence 47999999999 69999999986 23449995 578899999999877 589999999999999999999999999999
Q ss_pred EeccccCCc--ccHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceeecc
Q 022242 165 FSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (300)
Q Consensus 165 ~~ns~~~~~--~~~~-----~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clvp~ 237 (300)
|.||+|+++ .+|. .+.++.|+.++++..++++ +++++|+|+||+||||| |+.+++ |+|||
T Consensus 83 ~~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaaD--------il~~~a---d~vpv 149 (341)
T 3sz3_A 83 FVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA--NDVNAGLFGYPVLMAAD--------ILLYGA---HQVPV 149 (341)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHHH--------HHTTTC---SEECC
T ss_pred EeccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc--CCCChhhHHhHHHHHHH--------HHHcCC---CEEEe
Confidence 999999753 2332 1335666666666655543 57899999999999996 556665 88999
Q ss_pred ccCchhHHHHHHHHHHHhCC---------CCCceee---cccccCCCCCCCccccCCC--CCeeecCCCHHHHhccC
Q 022242 238 AIDQDPYFRMTRDVAPRIGY---------HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 238 G~DQd~~~~l~rdla~r~~~---------~kp~~i~---~~~lp~L~g~g~KMSkS~p--~saI~L~D~p~~i~~KI 300 (300)
|.||+||+++|||+|+|+|. +.|..+. +++||||+++.+|||||.| +|+|||+|+|++|++||
T Consensus 150 G~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI 226 (341)
T 3sz3_A 150 GSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKI 226 (341)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHh
Confidence 99999999999999999972 2444333 5789999764579999998 79999999999999997
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.5e-39 Score=333.06 Aligned_cols=201 Identities=12% Similarity=0.101 Sum_probs=171.8
Q ss_pred CCceEEEEecCCCCCCcchhhhHHHHH-HH-HHHHhCCCeEEEEEeccccccccC--CCHHHHHHHHHHHHHHHHHcCCC
Q 022242 83 GEKFYLYTGRGPSSEALHLGHLVPFMF-TK-YLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFD 158 (300)
Q Consensus 83 ~~~~~vytG~~PTg~~lHlGhli~~~~-~~-~lQ~~~~~~v~I~I~D~~~~~~r~--l~~e~i~~~~~~~~~~iiA~G~d 158 (300)
..+..++++- ||| +|||||++++++ ++ |+|.++|++++|+|||+||+++++ .++|++++++.+++++|+|+|+|
T Consensus 380 ~~~l~~~~~p-s~g-~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d 457 (690)
T 3p0j_A 380 AKPHACMWMP-ALL-KVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLP 457 (690)
T ss_dssp SSCEEEEECC-CCS-SCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcceEEecC-CCC-CcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 4577788777 776 999999999998 55 466778999999999999999987 89999999999999999999999
Q ss_pred CCceEEEeccccCCc---ccHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcceee
Q 022242 159 VTKTFIFSDFDYVGG---AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 235 (300)
Q Consensus 159 p~kt~I~~ns~~~~~---~~~~~~~~l~k~~t~~~~~~~~g~~~~~~~g~~~YP~lQaad~~~~~f~~i~~~~~~~~clv 235 (300)
| ++.|+.||+|... .+|.+++++++++|+++++++++ .+++++|+|.||++||||+ +.+++| ++
T Consensus 458 ~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~~-~~~~~i~~~~YPlmQaaDi--------~~l~aD---i~ 524 (690)
T 3p0j_A 458 S-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG-GEVRNAGQVIAALMRVATA--------LMLSVS---HV 524 (690)
T ss_dssp T-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHTT-SCCSSHHHHHHHHHHHHHH--------HHTTCS---EE
T ss_pred c-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHhC-CCCcchHHHHHHHHHHhhh--------hccCCC---EE
Confidence 8 6766678888754 59999999999999999999987 6789999999999999964 456664 57
Q ss_pred ccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCCCCeeecCCCHHHHhccC
Q 022242 236 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300 (300)
Q Consensus 236 p~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~i~~KI 300 (300)
|+|.||++|++|+||+++|++ +|+.++++++|+|+|++.+||||.++|+|+|+|+|++|++||
T Consensus 525 ~gG~DQ~~~~~LaRd~~~~~~--~~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI 587 (690)
T 3p0j_A 525 ISTSLDGHINAFAREYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKI 587 (690)
T ss_dssp EECSTTTTTTHHHHHHTTTCS--EEEECCCCSSCCSSCCCC-------CCSCBTTCCHHHHHHHH
T ss_pred ecccccHHHHHHHHHHHHhcc--CcccccccccccCCCcccccCCCCCCCeeeccCCHHHHHHHH
Confidence 999999999999999999954 688888999999999877777888899999999999999997
No 37
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.48 E-value=2.6e-06 Score=84.31 Aligned_cols=170 Identities=12% Similarity=0.158 Sum_probs=102.5
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
-||| .|||||+..++ .+| +.+..|...++-|.|... .| .. ..+...+.+++..+|++++.. ++.||+..
T Consensus 9 SPtG-~lHiG~artal-~n~l~Ar~~~G~filRieDtD~--~R-~~----~~~~~~i~~dL~wLGl~wde~-~~~QS~r~ 78 (492)
T 2cfo_A 9 SPTG-NLHIGTARTAV-FNWLYARHRGGKFILRIEDTDR--ER-SR----PEYTENILEGLQWLGLTWDEG-PYFQSDRL 78 (492)
T ss_dssp CTTS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCSS--SS-CC----HHHHHHHHHHHHHTTCCCSEE-EEEGGGCH
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEEeeCCc--cc-cc----hHHHHHHHHHHHHcCCCCCCC-CccccCCH
Confidence 5898 89999999985 466 445567778888888752 12 22 344557888899999998764 67888764
Q ss_pred CcccHHHHH-HH-----------------------------------HhhcCHHHHHHh--hCC--------CCC-----
Q 022242 172 GGAFYKNMV-KV-----------------------------------AKCVTYNKVVGI--FGF--------TGE----- 200 (300)
Q Consensus 172 ~~~~~~~~~-~l-----------------------------------~k~~t~~~~~~~--~g~--------~~~----- 200 (300)
. .|..++ ++ ++..+..+..+. .|. ...
T Consensus 79 ~--~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~ 156 (492)
T 2cfo_A 79 D--LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEW 156 (492)
T ss_dssp H--HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEE
T ss_pred H--HHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEE
Confidence 2 222211 11 111222221111 011 000
Q ss_pred --ccccccchhhhhc-CCCCCCCccccccCCCC------cc---------------eeeccccCchhHHHHHHHHHHHhC
Q 022242 201 --DHIGKVSFPPVQA-VPSFPSSFPHLFSGKDH------LR---------------CLIPCAIDQDPYFRMTRDVAPRIG 256 (300)
Q Consensus 201 --~~~g~~~YP~lQa-ad~~~~~f~~i~~~~~~------~~---------------clvp~G~DQd~~~~l~rdla~r~~ 256 (300)
.-.|.+.++.-+. -| +...++| .| ++|..|.|+..+--.-+.+.+.+|
T Consensus 157 ~D~v~G~~~~~~~~~~~D--------~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg 228 (492)
T 2cfo_A 157 QDLVRGRVSWQGADLGGD--------MVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG 228 (492)
T ss_dssp EETTTEEEEEEGGGGCSS--------EEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT
T ss_pred EecceeeeeecccccCCC--------eEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC
Confidence 0114444444444 33 2222322 11 456688888777666677779999
Q ss_pred CCCCceeecccccCCCCCCCccccCCCC
Q 022242 257 YHKPALIESSFFPALQGETGKMSASDPN 284 (300)
Q Consensus 257 ~~kp~~i~~~~lp~L~g~g~KMSkS~p~ 284 (300)
.+.|...|.+++.+.+| +|||||..+
T Consensus 229 ~~~P~~~H~plil~~~g--~KLSKr~g~ 254 (492)
T 2cfo_A 229 ATPPNFAHTPLILNSTG--QKLSKRDGV 254 (492)
T ss_dssp CCCCEEEEECCEECSSS--SBCCTTSSC
T ss_pred CCCceEEEeeeEECCCC--CEecccCCc
Confidence 99898778888888776 899999843
No 38
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.47 E-value=1.4e-06 Score=80.98 Aligned_cols=173 Identities=16% Similarity=0.190 Sum_probs=90.6
Q ss_pred CCCCCCcchhhhHHHHHHHHH-HHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 022242 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~l-Q~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (300)
-||| .|||||+..++ .+|+ .+..+..+++-|.|... .|.. ..+...+.+++.++|++++.. ++.||+..
T Consensus 13 sPtG-~LHiG~~rtal-~n~l~Ar~~~g~~ilRieDtD~--~R~~-----~~~~~~I~~dL~~LGl~~D~~-~~~qSer~ 82 (298)
T 1nzj_A 13 SPSG-ELHFGSLIAAL-GSYLQARARQGRWLVRIEDIDP--PREV-----PGAAETILRQLEHYGLHWDGD-VLWQSQRH 82 (298)
T ss_dssp CTTS-CCCHHHHHHHH-HHHHHHHHTTCEEEEEECCSCG--GGSC-----TTHHHHHHHHHHHTTCCCSSC-CEEGGGCH
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEEecCCc--hhhH-----HHHHHHHHHHHHHcCCCCCCC-CeeeeCCH
Confidence 6888 89999999985 6673 34457777888888542 1211 344557888999999999875 56788764
Q ss_pred CcccHHHHH-HH---Hh----hcCHHHHHHh---h-CCC-----C-------------C-----ccccccchhh-hhcCC
Q 022242 172 GGAFYKNMV-KV---AK----CVTYNKVVGI---F-GFT-----G-------------E-----DHIGKVSFPP-VQAVP 215 (300)
Q Consensus 172 ~~~~~~~~~-~l---~k----~~t~~~~~~~---~-g~~-----~-------------~-----~~~g~~~YP~-lQaad 215 (300)
..|..++ ++ +. ..|..++.+. + |.- . . .-.|++.++. .+.-|
T Consensus 83 --~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D 160 (298)
T 1nzj_A 83 --DAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLARED 160 (298)
T ss_dssp --HHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSC
T ss_pred --HHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCC
Confidence 2333322 22 11 2345555442 1 100 0 0 1123333333 23333
Q ss_pred CCCCCccccccCCCCc-c---------------eeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccc
Q 022242 216 SFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMS 279 (300)
Q Consensus 216 ~~~~~f~~i~~~~~~~-~---------------clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMS 279 (300)
. ...++|- + +.|..|.|+..+--..+.+.+-+|.+.|...|.+++.+.+| +|||
T Consensus 161 ~--------VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g--~KLS 230 (298)
T 1nzj_A 161 F--------IIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLS 230 (298)
T ss_dssp C--------EEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------
T ss_pred E--------EEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--Cccc
Confidence 2 2222221 0 23344888765544445566889999998878887777765 8999
Q ss_pred cCCCCCee
Q 022242 280 ASDPNSAI 287 (300)
Q Consensus 280 kS~p~saI 287 (300)
|+..+.+|
T Consensus 231 KR~g~~~v 238 (298)
T 1nzj_A 231 KQNHAPAL 238 (298)
T ss_dssp ------CC
T ss_pred ccCCccCh
Confidence 99843333
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.39 E-value=1.9e-06 Score=84.76 Aligned_cols=172 Identities=10% Similarity=0.088 Sum_probs=103.8
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 022242 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~-------I 164 (300)
.||| .|||||+..++ .+| +.+..|...++-|-|... .| .. ..+...+++++..+|++++... .
T Consensus 9 sPtG-~LHiG~~rtal-~n~l~Ar~~~G~filRieDtD~--~R-~~----~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp 79 (468)
T 1j09_A 9 SPTG-DPHVGTAYIAL-FNYAWARRNGGRFIVRIEDTDR--AR-YV----PGAEERILAALKWLGLSYDEGPDVGGPHGP 79 (468)
T ss_dssp CCSS-SCBHHHHHHHH-HHHHHHHHTTCEEEECBCCCCT--TS-CC----TTHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEeCcCCC--cc-cC----hHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 5898 89999999985 556 445556667777777642 12 11 2334467888899999998753 4
Q ss_pred EeccccCCcccHHH---HHH-------------H-------------HhhcCHHHHHHhh--CC--------CC--Ccc-
Q 022242 165 FSDFDYVGGAFYKN---MVK-------------V-------------AKCVTYNKVVGIF--GF--------TG--EDH- 202 (300)
Q Consensus 165 ~~ns~~~~~~~~~~---~~~-------------l-------------~k~~t~~~~~~~~--g~--------~~--~~~- 202 (300)
|.||+... .|+.- +++ + ++..+..+..+.. |. .. ...
T Consensus 80 ~~QS~r~~-~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~ 158 (468)
T 1j09_A 80 YRQSERLP-LYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEV 158 (468)
T ss_dssp CBGGGCHH-HHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEE
T ss_pred eeccCCHH-HHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEE
Confidence 78888642 22211 111 1 2234444433321 21 00 111
Q ss_pred ----ccccchhhhhcCCCCCCCccccccCCCCc-c---------------eeeccccCchhHHHHHHHHHHHhCCCCCce
Q 022242 203 ----IGKVSFPPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPAL 262 (300)
Q Consensus 203 ----~g~~~YP~lQaad~~~~~f~~i~~~~~~~-~---------------clvp~G~DQd~~~~l~rdla~r~~~~kp~~ 262 (300)
.|++.++.-+.-|. ...++|. | +.|..|.|+..+--.-+-+.+.+|.+.|..
T Consensus 159 ~D~~~G~~~~~~~~~~D~--------Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~ 230 (468)
T 1j09_A 159 KDELRGVVVYDNQEIPDV--------VLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRF 230 (468)
T ss_dssp EETTTEEEEEEGGGSCCC--------EEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEE
T ss_pred EeccceeEeecccCCCCe--------EEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeE
Confidence 25566666665543 2223321 1 344569998888777788889999988876
Q ss_pred eecccccCCCCCCCccccCCCC
Q 022242 263 IESSFFPALQGETGKMSASDPN 284 (300)
Q Consensus 263 i~~~~lp~L~g~g~KMSkS~p~ 284 (300)
.|.+++.+.+| +||||+..+
T Consensus 231 ~h~~li~~~~g--~klSKR~g~ 250 (468)
T 1j09_A 231 YHMPLLRNPDK--TKISKRKSH 250 (468)
T ss_dssp EEECCCBCTTS--CBCCTTTSC
T ss_pred EEeeeeeCCCC--Cccccccch
Confidence 66666666665 899999843
No 40
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.18 E-value=9.3e-06 Score=80.38 Aligned_cols=170 Identities=12% Similarity=0.113 Sum_probs=100.1
Q ss_pred CCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EE
Q 022242 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-------FI 164 (300)
Q Consensus 93 ~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt-------~I 164 (300)
.||| .|||||+..++ .+| +-+..|-.+++-|-|... .| .. ..+...++.++..+|++++.. -+
T Consensus 14 sPTG-~LHiG~~rtAL-~n~l~Ar~~gG~fiLRieDtD~--~R-~~----~~~~~~I~~~L~wlGl~wDegp~~gG~~~~ 84 (498)
T 2ja2_A 14 SPTG-TPHVGLVRTAL-FNWAYARHTGGTFVFRIEDTDA--QR-DS----EESYLALLDALRWLGLDWDEGPEVGGPYGP 84 (498)
T ss_dssp CSSS-SCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCCT--TT-CC----HHHHHHHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCC--cc-cC----hHHHHHHHHHHHHcCCCcCCCcCcCCCCCC
Confidence 6898 89999999985 555 444445556666766632 12 22 234446788888999999873 46
Q ss_pred EeccccCCcccHHHHH-HH---H-------------------------------hhcCHHHHHHhh--CC--------CC
Q 022242 165 FSDFDYVGGAFYKNMV-KV---A-------------------------------KCVTYNKVVGIF--GF--------TG 199 (300)
Q Consensus 165 ~~ns~~~~~~~~~~~~-~l---~-------------------------------k~~t~~~~~~~~--g~--------~~ 199 (300)
|.||+... .|..++ ++ + +..+..+..+.. |. .+
T Consensus 85 ~~QS~r~~--~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~ 162 (498)
T 2ja2_A 85 YRQSQRAE--IYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPD 162 (498)
T ss_dssp CBGGGCHH--HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCS
T ss_pred eeeecCHH--HHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCC
Confidence 78888642 222211 11 1 111222222211 11 00
Q ss_pred -Cc-----cccccchhhhhcCCCCCCCccccccCCCCc-c---------------eeeccccCchhHHHHHHHHHHHh--
Q 022242 200 -ED-----HIGKVSFPPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRI-- 255 (300)
Q Consensus 200 -~~-----~~g~~~YP~lQaad~~~~~f~~i~~~~~~~-~---------------clvp~G~DQd~~~~l~rdla~r~-- 255 (300)
.+ -.|.+.++.-+.-|+ ...++|. + +.|..|.|+..+.-..+-+.+.|
T Consensus 163 ~~~~~~D~v~G~i~~~~~~~~D~--------Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~ 234 (498)
T 2ja2_A 163 DDLAWNDLVRGPVTFAAGSVPDF--------ALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR 234 (498)
T ss_dssp SCEEEEETTTEEEEECTTCSCCC--------BSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH
T ss_pred CceEEEecccceEeecccccCcc--------eeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh
Confidence 01 124455555444442 2223221 1 23456999998887778888888
Q ss_pred ---CCCCCceeecccccCCCCCCCccccCCC
Q 022242 256 ---GYHKPALIESSFFPALQGETGKMSASDP 283 (300)
Q Consensus 256 ---~~~kp~~i~~~~lp~L~g~g~KMSkS~p 283 (300)
|.+.|...+.+++.+.+| +||||+..
T Consensus 235 ~g~g~~~P~~~h~plil~~~g--~KLSKR~g 263 (498)
T 2ja2_A 235 IGVAERIPKFAHLPTVLGEGT--KKLSKRDP 263 (498)
T ss_dssp TTSCCCCCEEEEECCEECSSS--SBCCTTSG
T ss_pred hcCCCCCCeEEEeeeeECCCC--CcccccCC
Confidence 998898778888877776 89999983
No 41
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.01 E-value=9.9e-06 Score=80.04 Aligned_cols=176 Identities=11% Similarity=0.146 Sum_probs=102.3
Q ss_pred eEEEEecCCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF- 163 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~- 163 (300)
+++=..=.||| .|||||+..++ .+| +.+..|...++-|-|... .| .. ......+.+++..+|++++...
T Consensus 26 v~~RFAPsPtG-~LHiG~~rtal-~n~l~Ar~~~G~filRieDtD~--~R-~~----~~~~~~I~~dL~wlGl~wDe~~~ 96 (488)
T 3afh_A 26 VRVRFAPSPTG-HLHVGGARTAL-FNWMFARKEGGKFILRIEDTDT--ER-SS----REYEQQILESLRWCGLDWDEGPD 96 (488)
T ss_dssp CEEEECCCCSS-SCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCCT--TT-CC----HHHHHHHHHHHHHTTCCCSBBTT
T ss_pred ceEEECCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEEeeCCc--cc-cc----HHHHHHHHHHHHHcCCCCCcCCC
Confidence 33434456788 89999999985 556 444446666777777642 12 22 2344468888899999998753
Q ss_pred ------EEeccccCCcccHHHHH-HHH-h--h----cCHHHHH-------------HhhCC--------CC-Cc-----c
Q 022242 164 ------IFSDFDYVGGAFYKNMV-KVA-K--C----VTYNKVV-------------GIFGF--------TG-ED-----H 202 (300)
Q Consensus 164 ------I~~ns~~~~~~~~~~~~-~l~-k--~----~t~~~~~-------------~~~g~--------~~-~~-----~ 202 (300)
+|.||+.. ..|..++ ++- + . .|..++. ...|. .+ .. -
T Consensus 97 ~gG~~gp~~QSer~--~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v 174 (488)
T 3afh_A 97 IGGDFGPYRQSERL--EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLL 174 (488)
T ss_dssp TBCTTCCCBGGGCH--HHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETT
T ss_pred CCCCCCCeeeeCCH--HHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEecc
Confidence 57788764 2333332 221 1 0 0111100 00121 10 01 1
Q ss_pred ccccchhhhhcCCCCCCCccccccCCCC-----------------cceeeccccCchhHHHHHHHHHHHhCCCCCceeec
Q 022242 203 IGKVSFPPVQAVPSFPSSFPHLFSGKDH-----------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 265 (300)
Q Consensus 203 ~g~~~YP~lQaad~~~~~f~~i~~~~~~-----------------~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~ 265 (300)
.|.+.++.-+.-|. ...++| + +.|..|.|+..+--..+-+.+.+|.+.|...|.
T Consensus 175 ~G~~~~~~~~~~D~--------Vl~R~DG~PtY~lA~vVDD~~mgI-ThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~ 245 (488)
T 3afh_A 175 KGYMEFDNSTLEDF--------IIMKSNGFPTYNFAVVVDDHLMRI-SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHI 245 (488)
T ss_dssp TEEEEEEGGGSCCE--------EEECTTSCBCHHHHHHHHHHHTTC-SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEE
T ss_pred ceeEeecCCCCCCe--------EEEecCCCeehhhHHHHHHHhcCC-CEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEE
Confidence 24444444333321 111211 2 345579998888777788889999999987788
Q ss_pred ccccCCCCCCCccccCCC
Q 022242 266 SFFPALQGETGKMSASDP 283 (300)
Q Consensus 266 ~~lp~L~g~g~KMSkS~p 283 (300)
+++.+.+| +||||+..
T Consensus 246 pli~~~~g--~KLSKR~g 261 (488)
T 3afh_A 246 PLILGSDR--TPLSKRHG 261 (488)
T ss_dssp CCEECTTS--SBCCTTTS
T ss_pred eeeeCCCC--CcccCcCC
Confidence 88877775 89999983
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.00 E-value=7.6e-06 Score=82.65 Aligned_cols=176 Identities=11% Similarity=0.166 Sum_probs=102.5
Q ss_pred eEEEEecCCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF- 163 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~- 163 (300)
+.+=..=-||| .|||||+..++ .+| +.+.+|...++-|.|... .| .. ..+...+.+++..+|++++...
T Consensus 130 v~~RFaPsPTG-~LHiG~artAl-~n~l~Ar~~~G~~ilRieDtD~--~r-~~----~~~~~~I~~dL~wlGl~~D~~~~ 200 (592)
T 3al0_C 130 VRVRFAPSPTG-HLHVGGARTAL-FNWMFARKEGGKFILRIEDTDT--ER-SS----REYEQQILESLRWCGLDWDEGPD 200 (592)
T ss_dssp CEEEECCCSSS-CCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCCS--SS-CC----HHHHHHHHHHHHHTTCCCSBBTT
T ss_pred EEEEECCCCCC-CccHHHHHHHH-HHHHHHHhcCCcEEEEecCcCh--hh-cc----HHHHHHHHHHHHHcCCCCCCCCC
Confidence 43444467898 89999999985 555 555556667777877531 12 22 2344467888889999998742
Q ss_pred ------EEeccccCCcccHHHHH-HH---Hhhc----CHHHH-------------HHhhC--------CC-CC-----cc
Q 022242 164 ------IFSDFDYVGGAFYKNMV-KV---AKCV----TYNKV-------------VGIFG--------FT-GE-----DH 202 (300)
Q Consensus 164 ------I~~ns~~~~~~~~~~~~-~l---~k~~----t~~~~-------------~~~~g--------~~-~~-----~~ 202 (300)
+|.||+.. ..|..++ ++ +... |..++ ....| .. .. .-
T Consensus 201 ~gG~~gp~~qSer~--~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v 278 (592)
T 3al0_C 201 IGGDFGPYRQSERL--EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLL 278 (592)
T ss_dssp TBCTTCCCBSTTCH--HHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTT
T ss_pred cCCCCCCeeeeCCH--HHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecc
Confidence 56788764 2333322 22 1110 00000 00011 01 00 11
Q ss_pred ccccchhhhhcCCCCCCCccccccCCCC-----------------cceeeccccCchhHHHHHHHHHHHhCCCCCceeec
Q 022242 203 IGKVSFPPVQAVPSFPSSFPHLFSGKDH-----------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 265 (300)
Q Consensus 203 ~g~~~YP~lQaad~~~~~f~~i~~~~~~-----------------~~clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~ 265 (300)
.|.+.++.-+.-| +...++| + ++|..|.|+..+--..+-+.+.||.+.|...|.
T Consensus 279 ~G~~~~~~~~~~D--------~Vl~R~dg~ptY~~a~vvDD~~~gi-thvirG~D~~~~t~~q~~l~~alg~~~P~~~hl 349 (592)
T 3al0_C 279 KGYMEFDNSTLED--------FIIMKSNGFPTYNFAVVVDDHLMRI-SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHI 349 (592)
T ss_dssp TCSEECCSSSSCC--------EEEECTTSCCCHHHHHHHHHHHTTC-SBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEE
T ss_pred cceeeeccccCCC--------eEEEcCCCCeehhhHHHHHHHhcCC-CeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEe
Confidence 2334444333222 1111221 2 345679999888888888899999988977777
Q ss_pred ccccCCCCCCCccccCCC
Q 022242 266 SFFPALQGETGKMSASDP 283 (300)
Q Consensus 266 ~~lp~L~g~g~KMSkS~p 283 (300)
+++.+.+| +||||+..
T Consensus 350 pli~~~~g--~KLSKR~g 365 (592)
T 3al0_C 350 PLILGSDR--TPLSKRHG 365 (592)
T ss_dssp CCCBCTTS--SBCCTTTC
T ss_pred eeeeCCCC--CcccccCC
Confidence 77777775 89999983
No 43
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.58 E-value=0.00034 Score=69.91 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=50.0
Q ss_pred ecCCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccc
Q 022242 91 GRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 169 (300)
Q Consensus 91 G~~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~ 169 (300)
.=.||| .|||||+..++ ++| +.+.++...++-|.|.-.- | . ...+...+.+++..+|++++ .++.||+
T Consensus 102 aPsPtG-~LHIGhaRtal-~n~l~Ar~~~G~~iLRieDtD~~--R-~----~~e~~~~I~edL~wLGl~wd--~~~~qSd 170 (553)
T 3aii_A 102 APNPSG-PLHIGHARAAI-LNHEYARKYDGRLILRIEDTDPR--R-V----DPEAYDMIPADLEWLGVEWD--ETVIQSD 170 (553)
T ss_dssp CCCSSS-SCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCGG--G-C----CTTHHHHHHHHHHHHTCCCS--EEEEGGG
T ss_pred CCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCcc--c-c----cHHHHHHHHHHHHHcCCCCC--CCccccc
Confidence 335687 89999999985 566 5566788888888876421 2 1 12444567888889999996 4788988
Q ss_pred cC
Q 022242 170 YV 171 (300)
Q Consensus 170 ~~ 171 (300)
..
T Consensus 171 r~ 172 (553)
T 3aii_A 171 RM 172 (553)
T ss_dssp GH
T ss_pred CH
Confidence 75
No 44
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.51 E-value=0.00023 Score=70.15 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=38.4
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCC
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 283 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p 283 (300)
+.|..|.||..+.-.-.-+.+.+|.+.|...|.+++...+| +||||+..
T Consensus 220 thvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~g 268 (481)
T 2o5r_A 220 THVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRHG 268 (481)
T ss_dssp SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGGS
T ss_pred CeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcCC
Confidence 34568999888877778888999998887677676655555 89999983
No 45
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.28 E-value=0.0032 Score=62.10 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=52.0
Q ss_pred ceEEEEecCCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 022242 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (300)
++.+=..=-||| .|||||+..++ .+| +.+..+...++-|-|... .| .. ..+...+.+++..+|++++..
T Consensus 25 ~v~~RFAPSPTG-~lHiG~~rtal-~n~l~Ar~~~G~filRieDtD~--~R-~~----~~~~~~i~~dl~wlGl~~d~~- 94 (490)
T 4g6z_A 25 PVRTRFAPSPTG-FIHLGNIRSAL-YPWAFARKMKGTFVLRIEDTDV--ER-SS----QEAVDAILEGMAWLGLDYDEG- 94 (490)
T ss_dssp CCEEEECCCCCS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCG--GG-CC----HHHHHHHHHHHHHTTCCCSEE-
T ss_pred CceEEeCCCCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEeCCCCc--cc-cc----HHHHHHHHHHHHHcCCCCCCC-
Confidence 333444456787 79999999985 456 445567777777877542 12 22 345557888899999999764
Q ss_pred EEeccccC
Q 022242 164 IFSDFDYV 171 (300)
Q Consensus 164 I~~ns~~~ 171 (300)
+|.||+..
T Consensus 95 ~~~qS~r~ 102 (490)
T 4g6z_A 95 PYYQMQRM 102 (490)
T ss_dssp EEEGGGCH
T ss_pred CcccccCH
Confidence 57788754
No 46
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=97.27 E-value=0.0014 Score=64.91 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=24.5
Q ss_pred ccccCchhH---HHHHHHHH-HHhCCCCCceeecccccCCCCCCCccccCCCCCeeec
Q 022242 236 PCAIDQDPY---FRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 289 (300)
Q Consensus 236 p~G~DQd~~---~~l~rdla-~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p~saI~L 289 (300)
.+|.|+... ......++ .-+|.+.|..++..++.. .|.|+|||||. +|.|.+
T Consensus 235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~-Gn~i~~ 290 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSK-GNVILL 290 (523)
T ss_dssp CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC----------CCCCH
T ss_pred CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcC-CCCCCH
Confidence 467776551 11334555 557877787667676654 32368999999 777654
No 47
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.02 E-value=0.0061 Score=60.41 Aligned_cols=49 Identities=10% Similarity=-0.003 Sum_probs=38.3
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCCCCCccccCCC
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 283 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g~g~KMSkS~p 283 (300)
+.|..|.|....--.-+-|.+-||.+.|...|.+++.+-+| +|+||...
T Consensus 231 THViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g--~kLSKR~~ 279 (512)
T 4gri_A 231 THVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDG--QKLSKRHG 279 (512)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--SBCCTTTS
T ss_pred ceeccccccccccHHHHHHHHHcCCCCCeEEecchhccccc--cccCcccc
Confidence 46778888666555557788889999998888888877765 89999973
No 48
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=94.54 E-value=0.23 Score=49.53 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=55.9
Q ss_pred HHHhcCC--ceEEEEecCCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHH
Q 022242 78 DAYEKGE--KFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 154 (300)
Q Consensus 78 ~~~~~~~--~~~vytG~~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA 154 (300)
+.+++|+ ++..=.+=.||| .|||||+-.++ ++| +.+.+|...++-|.|.-. .| .. .++...+.+++..
T Consensus 17 ~dl~~~~~~~v~tRFaPSPtG-~LHIGhaRtal-~n~l~Ar~~gG~fiLRieDTD~--~R-~~----~e~~~~I~edL~w 87 (553)
T 1qtq_A 17 EDLASGKHTTVHTRFPPEPNG-YLHIGHAKSIC-LNFGIAQDYKGQCNLRFDDTNP--VK-ED----IEYVESIKNDVEW 87 (553)
T ss_dssp HHHHHTSCSSCEEEECCCTTS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCG--GG-CC----HHHHHHHHHHHHH
T ss_pred hHhhcCCcCceEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECCCCc--hh-cC----HHHHHHHHHHHHH
Confidence 3455554 344445666788 89999999985 466 556677778888887642 12 22 2444567888889
Q ss_pred cCCCCCceEEEeccccC
Q 022242 155 CGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 155 ~G~dp~kt~I~~ns~~~ 171 (300)
+|++++.. ++.||+..
T Consensus 88 LGl~wde~-~~~qSer~ 103 (553)
T 1qtq_A 88 LGFHWSGN-VRYSSDYF 103 (553)
T ss_dssp TTCCCSSS-CEEGGGGH
T ss_pred cCCCCCCC-CeehcccH
Confidence 99998543 46788775
No 49
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=94.34 E-value=0.11 Score=51.14 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=49.7
Q ss_pred HhcCCceEEEEe-cCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEeccc---cccc---c-CCCHHH-HHHHHHH
Q 022242 80 YEKGEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE---KCMW---K-NLSVEE-SQRLARE 147 (300)
Q Consensus 80 ~~~~~~~~vytG-~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~~---~~~~---r-~l~~e~-i~~~~~~ 147 (300)
+++.|+|+|-|. -=++| .+||||+.... .+.++++.-|..|...-|.++ +... + ..+..+ +.++..+
T Consensus 5 ~~~~k~f~Ittp~pY~nG-~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~ 83 (542)
T 3u1f_A 5 MKVEKVFFVTSPIYYVNA-APHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGE 83 (542)
T ss_dssp --CCCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEeCCCCCCCC-chhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345677887776 35787 89999988654 334455555666665555554 3221 1 256555 4556667
Q ss_pred HHHHHHHcCCCCC
Q 022242 148 NAKDIIACGFDVT 160 (300)
Q Consensus 148 ~~~~iiA~G~dp~ 160 (300)
..+++.++|++.+
T Consensus 84 ~~~~~~~lgi~~D 96 (542)
T 3u1f_A 84 FKKCFEQMDYSID 96 (542)
T ss_dssp HHHHHHHHTCCCS
T ss_pred HHHHHHHhCCccC
Confidence 7778888898765
No 50
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=94.00 E-value=0.23 Score=51.84 Aligned_cols=84 Identities=20% Similarity=0.278 Sum_probs=56.7
Q ss_pred HHHhcCCceEEEE--ecCCCCCCcchhhhHHHHHHHH-HHHhCCCeEEEEEeccccccccCCCHHHHHHHHHHHHHHHHH
Q 022242 78 DAYEKGEKFYLYT--GRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 154 (300)
Q Consensus 78 ~~~~~~~~~~vyt--G~~PTg~~lHlGhli~~~~~~~-lQ~~~~~~v~I~I~D~~~~~~r~l~~e~i~~~~~~~~~~iiA 154 (300)
+.++.|+.-.+.| +=.||| .|||||+-.++ ++| +.+.+|..+++-|.|.-. .| - ...+...+.+++..
T Consensus 57 ~dl~~g~~~~v~tRFaPSPtG-~LHIGhARtAL-~n~l~Ar~~gG~fiLRIEDTD~--~R-~----~~e~~~~IledL~w 127 (851)
T 2hz7_A 57 RDLEAGKYPRVVTRFPPDPSG-YAHLGHVFASL-LDFNTARQYGGQFNLRMDDTNP--EL-A----RQEYVDSIADDLKW 127 (851)
T ss_dssp HHHHTTSCSSCEEEECCCSSS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCT--TT-C----CHHHHHHHHHHHHH
T ss_pred HHhhcCCcCceEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCc--cc-c----cHHHHHHHHHHHHH
Confidence 4455654322444 667788 89999999985 466 556678888888887642 12 2 23455568888888
Q ss_pred cCCCCCceEEEeccccC
Q 022242 155 CGFDVTKTFIFSDFDYV 171 (300)
Q Consensus 155 ~G~dp~kt~I~~ns~~~ 171 (300)
+|++++.. ++.||+..
T Consensus 128 LGl~wde~-~~~qSer~ 143 (851)
T 2hz7_A 128 LGLDWGEH-FYYASDYF 143 (851)
T ss_dssp HTCCCTTC-EEEGGGGH
T ss_pred cCCCCCCC-cccHhhhH
Confidence 99998543 57788875
No 51
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=93.09 E-value=0.025 Score=55.30 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=37.6
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCCce--eecccccC-CCCCCCccccCCCCCeeecCC
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPAL--IESSFFPA-LQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~kp~~--i~~~~lp~-L~g~g~KMSkS~p~saI~L~D 291 (300)
++--+|.||..|+.-...+++.+|++.+.. +.+-++.. -+|.+.|||||. +|.|++.|
T Consensus 238 ~Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~-Gn~v~l~d 298 (464)
T 3fnr_A 238 CINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRA-GNFILMSD 298 (464)
T ss_dssp EEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---C-CSSCBHHH
T ss_pred EEEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcC-CCCCCHHH
Confidence 333689999999998889999999864432 22334422 144335999999 88988755
No 52
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=90.15 E-value=0.79 Score=47.02 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=49.0
Q ss_pred CceEEEEec-CCCCCCcchhhhHH-H---HHHHHHHHhCCCeEEEEEeccc-cc--cc---c-CCCHHH-HHHHHHHHHH
Q 022242 84 EKFYLYTGR-GPSSEALHLGHLVP-F---MFTKYLQDAFKVPLVIQLTDDE-KC--MW---K-NLSVEE-SQRLARENAK 150 (300)
Q Consensus 84 ~~~~vytG~-~PTg~~lHlGhli~-~---~~~~~lQ~~~~~~v~I~I~D~~-~~--~~---r-~l~~e~-i~~~~~~~~~ 150 (300)
++++|.++. =|+| .+||||+.. . ..+.++++.-|..|....|.++ .. .. + ..++.+ +.++.....+
T Consensus 2 ~~~~itt~~Py~nG-~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 2 VRYMVTSALPYANG-PIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCC-chhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 467888887 5676 899999986 3 2455566666777766655444 31 11 1 255555 4445556677
Q ss_pred HHHHcCCCCCc
Q 022242 151 DIIACGFDVTK 161 (300)
Q Consensus 151 ~iiA~G~dp~k 161 (300)
++.++|++.+.
T Consensus 81 ~~~~lgis~D~ 91 (722)
T 1rqg_A 81 TFQRAKISFDF 91 (722)
T ss_dssp HHHHHTCCCSE
T ss_pred HHHHhCCCCCC
Confidence 77888987763
No 53
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=89.94 E-value=0.16 Score=49.43 Aligned_cols=75 Identities=17% Similarity=0.046 Sum_probs=43.2
Q ss_pred eEEEEecC--CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe-ccccc--c---cc-CCCHHH-HHHHHHHHHHHH
Q 022242 86 FYLYTGRG--PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKC--M---WK-NLSVEE-SQRLARENAKDI 152 (300)
Q Consensus 86 ~~vytG~~--PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~-D~~~~--~---~r-~l~~e~-i~~~~~~~~~~i 152 (300)
.++.||-- ||| .+||||+.... .+.++++..|..|....| |.+.. . .+ ..++++ +.++..+..+++
T Consensus 6 ~~~i~~p~py~ng-~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 84 (497)
T 2csx_A 6 KFYVTTPIYYVND-VPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLW 84 (497)
T ss_dssp EEEEEEEEEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCC-ccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34555554 568 89999988654 233445555665555433 33321 0 01 144544 444556677788
Q ss_pred HHcCCCCCc
Q 022242 153 IACGFDVTK 161 (300)
Q Consensus 153 iA~G~dp~k 161 (300)
.++|++++.
T Consensus 85 ~~lgi~~d~ 93 (497)
T 2csx_A 85 EFLKIEYTK 93 (497)
T ss_dssp HHTTCCCSE
T ss_pred HHhCCcCCC
Confidence 899998873
No 54
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=89.81 E-value=0.88 Score=44.18 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=31.3
Q ss_pred eeccccCchhH-HHHHHHHHHHhCCCCCc-eeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDPY-FRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~~-~~l~rdla~r~~~~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+...|.||..+ ..+-.....-+|.+.|. .+++-++.. . |+|||||. +|.|.+.|
T Consensus 253 i~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~--G~KMSKS~-GN~i~~~d 308 (497)
T 2csx_A 253 LHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-E--GKKMSKTL-GNVVDPYE 308 (497)
T ss_dssp CEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-S--SSBCCTTT-TCCCCHHH
T ss_pred EEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-C--CceeCCcC-CCCCCHHH
Confidence 34689988762 21211222335665454 344555544 4 58999999 88887643
No 55
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=89.66 E-value=1.3 Score=43.76 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=43.5
Q ss_pred CceEEEEe-cCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEE-ecccc--ccc---c-CCCHHH-HHHHHHHHHHH
Q 022242 84 EKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEK--CMW---K-NLSVEE-SQRLARENAKD 151 (300)
Q Consensus 84 ~~~~vytG-~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I-~D~~~--~~~---r-~l~~e~-i~~~~~~~~~~ 151 (300)
+++++.++ --||| .+||||+...+ .+.++++..|..|.... .|.+. ... + ..++++ +.++.....++
T Consensus 18 ~~~~v~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 96 (560)
T 3h99_A 18 KKILVTCASPYANG-SIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTD 96 (560)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCCCC-CcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34544444 33448 79999988664 23334444466665543 44442 111 1 255554 34444567777
Q ss_pred HHHcCCCCCc
Q 022242 152 IIACGFDVTK 161 (300)
Q Consensus 152 iiA~G~dp~k 161 (300)
+.++|++.+.
T Consensus 97 ~~~lgi~~d~ 106 (560)
T 3h99_A 97 FAGFNISYDN 106 (560)
T ss_dssp HHHTTCCCSE
T ss_pred HHHcCCCCCC
Confidence 8889998763
No 56
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=88.94 E-value=1.1 Score=43.55 Aligned_cols=73 Identities=12% Similarity=0.047 Sum_probs=41.9
Q ss_pred EEEEecCC--CCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe-ccccc--cc---c-CCCHHH-HHHHHHHHHHHHH
Q 022242 87 YLYTGRGP--SSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKC--MW---K-NLSVEE-SQRLARENAKDII 153 (300)
Q Consensus 87 ~vytG~~P--Tg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~-D~~~~--~~---r-~l~~e~-i~~~~~~~~~~ii 153 (300)
++.||--| +| .+||||+.... .+.++++..|..|....| |.+.. .. + ..++.+ +.++.....+++.
T Consensus 5 ~~i~~p~py~~g-~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 5 FYVTTPIYYVNA-EPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEECCCEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45566655 67 89999988654 233344555666655443 32221 00 1 144444 3334456677788
Q ss_pred HcCCCCC
Q 022242 154 ACGFDVT 160 (300)
Q Consensus 154 A~G~dp~ 160 (300)
++|++++
T Consensus 84 ~lgi~~d 90 (500)
T 2d5b_A 84 LLGIAYD 90 (500)
T ss_dssp HTTCCCS
T ss_pred HhCCcCC
Confidence 8999876
No 57
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=88.81 E-value=0.24 Score=48.17 Aligned_cols=55 Identities=13% Similarity=-0.059 Sum_probs=31.7
Q ss_pred eeccccCchhHHH-HHHHHHHHhCCCCCc-eeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDPYFR-MTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~~~~-l~rdla~r~~~~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+...|.||..+.- .-.-.+.-+|.+.|. .+++-++..-+ |+|||||. +|.|.+.|
T Consensus 254 i~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~--G~KMSKS~-GN~i~p~d 310 (500)
T 2d5b_A 254 WHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPD--GRKMSKTL-GNVVDPFA 310 (500)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTT--SSCCCTTT-TCCCCHHH
T ss_pred EEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCC--CCcccccC-CCCCCHHH
Confidence 4468999876221 111122234665554 34455554324 58999999 88887643
No 58
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=87.97 E-value=1.7 Score=45.67 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=54.9
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEec-CCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe-cccccc--
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-- 132 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~-~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~-D~~~~~-- 132 (300)
.+.+.++|....+. .++++++++++ -||| .|||||..... .+.++++.-|..|....| |.+..-
T Consensus 37 ~W~~~~~f~~~~~~--------~~~~~~v~~~~PypnG-~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie 107 (880)
T 4arc_A 37 HWDEKRTFEVTEDE--------SKEKYYCLSMLPYPSG-RLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAE 107 (880)
T ss_dssp HHHHTTTTCCCCCT--------TSCEEEEEECCCCCCS-SCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHH
T ss_pred HHHhcCCcccCCcC--------CCCCEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHH
Confidence 45666777654431 34678898887 5666 89999988654 344455655776665544 333211
Q ss_pred ---cc-CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 022242 133 ---WK-NLSVEE-SQRLARENAKDIIACGFDVT 160 (300)
Q Consensus 133 ---~r-~l~~e~-i~~~~~~~~~~iiA~G~dp~ 160 (300)
.+ ..+..+ ..++.....+++.++|+..+
T Consensus 108 ~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~D 140 (880)
T 4arc_A 108 GAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYD 140 (880)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 11 244433 33444556667788998776
No 59
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=86.54 E-value=0.25 Score=49.21 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=42.7
Q ss_pred CCceEEEEec-CCCCCCcchhhhHHHHH---HHHHHHhCCCeE-EEEEeccccc--cc---c-CCCHHH-HHHHHHHHHH
Q 022242 83 GEKFYLYTGR-GPSSEALHLGHLVPFMF---TKYLQDAFKVPL-VIQLTDDEKC--MW---K-NLSVEE-SQRLARENAK 150 (300)
Q Consensus 83 ~~~~~vytG~-~PTg~~lHlGhli~~~~---~~~lQ~~~~~~v-~I~I~D~~~~--~~---r-~l~~e~-i~~~~~~~~~ 150 (300)
++++++-+.. -|+| .+||||+...+. +.++++..|..| .+.=.|++.. .. + ..++++ +.++..+..+
T Consensus 25 ~~~~~i~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~ 103 (564)
T 3kfl_A 25 QKVFFATTPIYYVNA-SPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQ 103 (564)
T ss_dssp CCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4455544432 4778 899999876542 333444335444 4444455531 11 1 155555 3444456666
Q ss_pred HHHHcCCCCC
Q 022242 151 DIIACGFDVT 160 (300)
Q Consensus 151 ~iiA~G~dp~ 160 (300)
++.++|++.+
T Consensus 104 ~~~~lgi~~D 113 (564)
T 3kfl_A 104 CFQEMNYDMN 113 (564)
T ss_dssp HHHHTTCCCS
T ss_pred HHHHcCCCCC
Confidence 7778898876
No 60
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=86.29 E-value=0.17 Score=51.30 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=39.3
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCC-Ccee-e--cccccCCCCCCCccccCCCC--CeeecCC
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHK-PALI-E--SSFFPALQGETGKMSASDPN--SAIYVTD 291 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~k-p~~i-~--~~~lp~L~g~g~KMSkS~p~--saI~L~D 291 (300)
++--.|.+|+.|+.-...+++.+|++. +.-+ | +-++. +. ++|||||. + +.|.|.|
T Consensus 379 ~IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~--~~KMSkr~-G~~n~v~l~d 439 (629)
T 2zue_A 379 VINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RP--EGKFSGRK-GTWVGFTVDE 439 (629)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BT--TBCCCTTT-TTTTTCBHHH
T ss_pred EEEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cC--CCcccCCC-CCCCeeeHHH
Confidence 334689999999999999999999854 2212 2 23333 33 48999998 8 8898765
No 61
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=86.07 E-value=0.1 Score=52.40 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=34.3
Q ss_pred ccccCchhHHHHHHHHHHHhCCCCC--ceee--cccccCCCCCCCccccCCCCCeeecCC
Q 022242 236 PCAIDQDPYFRMTRDVAPRIGYHKP--ALIE--SSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 236 p~G~DQd~~~~l~rdla~r~~~~kp--~~i~--~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
-.|.||..|+.....+++.+|++.+ ...| +-++. +. |+|||||. ++.|.+.|
T Consensus 352 V~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~~--g~KMSKr~-Gn~v~l~d 407 (592)
T 1iq0_A 352 VVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LE--GRQMSGRK-GLAVSVDE 407 (592)
T ss_dssp EEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ET--TBCSCC-----CCBHHH
T ss_pred EEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-cC--CCcccCCC-CCccCHHH
Confidence 5799999999999999999998542 2223 23343 33 58999999 88887765
No 62
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=85.47 E-value=2.9 Score=41.43 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=31.2
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCCcee-ecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~~~~l~-rdla~r~~~~kp~~i-~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+..+|.||..+.-+- --+..-+|.+.|..+ .+-++ ... |+|||||. +|.|++.|
T Consensus 297 v~~~GkDii~FH~~~wpa~L~a~g~~~~~~v~~hg~v-~~~--G~KMSKS~-GNvV~p~d 352 (564)
T 3kfl_A 297 VHVVGKDILKFHAIYWPAFLMSAELPLPERLVSHGWW-TKD--HKKISKSL-GNAFDPVE 352 (564)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCE-EET--TEECCTTT-TCCCCHHH
T ss_pred eEEEeecccchHHHHHHHHHHhCCCCCCcEEEEcccE-eeC--CccccccC-CCCCCHHH
Confidence 346899998842221 011122455555333 34555 445 48999999 88987543
No 63
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=84.43 E-value=0.48 Score=49.29 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=29.5
Q ss_pred eccccCchh-HHHHHHHHHHHh-CCCCCc-eeecccccCCCCCCCccccCCCCCeeec
Q 022242 235 IPCAIDQDP-YFRMTRDVAPRI-GYHKPA-LIESSFFPALQGETGKMSASDPNSAIYV 289 (300)
Q Consensus 235 vp~G~DQd~-~~~l~rdla~r~-~~~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L 289 (300)
...|.||.. |+........-+ +.+.+. .+.+-++....| +|||||. +|.|.+
T Consensus 548 ~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~-GNvV~p 602 (821)
T 1ile_A 548 IAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSK-GNVVDP 602 (821)
T ss_dssp EEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTT-TCCCCH
T ss_pred ccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccC-CCCCCH
Confidence 357889863 543333332222 332222 234555555554 8999999 888875
No 64
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=84.30 E-value=1.9 Score=41.94 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=43.6
Q ss_pred EEEecCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEE--Eeccc-ccccc----CCCHHH-HHHHHHHHHHHHHHcC
Q 022242 88 LYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEE-SQRLARENAKDIIACG 156 (300)
Q Consensus 88 vytG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~--I~D~~-~~~~r----~l~~e~-i~~~~~~~~~~iiA~G 156 (300)
.+||-=|.+ .+||||+.+.+ .+.++.+..|..|... ++|.. +...+ ..++.+ +.++..+..+++.++|
T Consensus 29 YvcGPtvy~-~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~Lg 107 (462)
T 3tqo_A 29 YVCGMTVYD-YMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALR 107 (462)
T ss_dssp EECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred EeCCCcCCC-CCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 446888887 89999987654 3333333346555443 44432 32221 255555 4455567777888899
Q ss_pred CCCCc
Q 022242 157 FDVTK 161 (300)
Q Consensus 157 ~dp~k 161 (300)
+.++.
T Consensus 108 I~~d~ 112 (462)
T 3tqo_A 108 VLSPD 112 (462)
T ss_dssp CCCCS
T ss_pred CCCCc
Confidence 97643
No 65
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=84.29 E-value=3.7 Score=40.27 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=42.4
Q ss_pred CceEEEEecCC--CCCCcchhhhHHHHH---HHHHHHhCCCeEEEE-Eeccccc--cc----cCCCHHH-HHHHHHHHHH
Q 022242 84 EKFYLYTGRGP--SSEALHLGHLVPFMF---TKYLQDAFKVPLVIQ-LTDDEKC--MW----KNLSVEE-SQRLARENAK 150 (300)
Q Consensus 84 ~~~~vytG~~P--Tg~~lHlGhli~~~~---~~~lQ~~~~~~v~I~-I~D~~~~--~~----r~l~~e~-i~~~~~~~~~ 150 (300)
++++ .||-=| || .+||||+.+.+. +.++++..|..|... =.|++.. .. ...++++ +.++..+..+
T Consensus 25 ~~~~-i~~p~pypng-~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~ 102 (536)
T 4dlp_A 25 EKYY-ITTAIAYPNG-KPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRR 102 (536)
T ss_dssp CEEE-EEECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCEE-EeCCCCCCCC-CcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3444 455444 57 799999876643 344444456655544 3455421 11 1145554 3444456667
Q ss_pred HHHHcCCCCC
Q 022242 151 DIIACGFDVT 160 (300)
Q Consensus 151 ~iiA~G~dp~ 160 (300)
++.++|++.+
T Consensus 103 ~l~~lgi~~d 112 (536)
T 4dlp_A 103 MAEVLNSSND 112 (536)
T ss_dssp HHHHTTCCCS
T ss_pred HHHHcCCCCC
Confidence 7788999876
No 66
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=84.22 E-value=4 Score=39.74 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=43.0
Q ss_pred CceEEEEec-CCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe-ccccc-c-c----cCCCHHH-HHHHHHHHHHH
Q 022242 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKC-M-W----KNLSVEE-SQRLARENAKD 151 (300)
Q Consensus 84 ~~~~vytG~-~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~-D~~~~-~-~----r~l~~e~-i~~~~~~~~~~ 151 (300)
+.+++.|.+ -|+| .+||||+...+ .+.++++..|..|....| |.+.. . . ...++.+ ++++..+..++
T Consensus 12 ~~~~i~t~~P~~ng-~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 90 (524)
T 2x1l_A 12 EPFYITTAIAYPNG-VPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRL 90 (524)
T ss_dssp CEEEEEECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCC-CcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345555554 4567 89999988654 233444555766655443 32221 0 0 1144544 34455566777
Q ss_pred HHHcCCCCC
Q 022242 152 IIACGFDVT 160 (300)
Q Consensus 152 iiA~G~dp~ 160 (300)
+.++|++++
T Consensus 91 ~~~lgi~~d 99 (524)
T 2x1l_A 91 QEKLNISFD 99 (524)
T ss_dssp HHHTTCCCS
T ss_pred HHHcCCcCC
Confidence 788898775
No 67
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=83.28 E-value=0.46 Score=46.62 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=27.5
Q ss_pred ccccCchhHHHH---HHHHHHHhCCCCCcee-ecccccCCCCCCCccccCCCCCeeec
Q 022242 236 PCAIDQDPYFRM---TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYV 289 (300)
Q Consensus 236 p~G~DQd~~~~l---~rdla~r~~~~kp~~i-~~~~lp~L~g~g~KMSkS~p~saI~L 289 (300)
..|.||-.+..+ ++-++. |.+.|..+ ++-++. .. |+|||||. +|.|..
T Consensus 283 ~~G~D~~~fh~~~~~a~l~~~--g~~~~~~v~~hg~l~-~~--G~KMSKSl-GNvi~p 334 (542)
T 3u1f_A 283 VIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWWT-KD--RKKISKSL-GNVFDP 334 (542)
T ss_dssp EEEGGGHHHHHTHHHHHHHHH--TCCCCSCEEEECCCE-ET--TBCCBTTT-TBCCCH
T ss_pred EecccccccccchhHHHHHhh--cccccceecccccee-cC--Cceecccc-CCCCCh
Confidence 579998664322 233333 54444333 344432 33 69999999 888864
No 68
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=82.69 E-value=2.9 Score=43.76 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=39.1
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEec-CCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEeccc
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~-~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (300)
.+.+ |+|....+ ..+++|++++|. -||| .||+||.+... ++.++++.-|..+.-..|-++
T Consensus 19 ~W~~-~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~ 82 (862)
T 1gax_A 19 KWAK-NPFVANPK--------SGKPPFVIFMPPPNVTG-SLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82 (862)
T ss_dssp HHHH-SCCCCCTT--------CCSCEEEEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBC
T ss_pred HHHh-CCCccCcC--------CCCCcEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHhCCCccccccccCC
Confidence 4555 77755432 134678888885 4577 89999988543 344567766777777666554
No 69
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=82.33 E-value=0.42 Score=46.79 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=29.6
Q ss_pred eccccCchhHHHH-HHHHHHHhCCCCCc-eeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 235 IPCAIDQDPYFRM-TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 235 vp~G~DQd~~~~l-~rdla~r~~~~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
..+|.||-.+.-+ -.-.+..+|.+.|. .+.+-++.. . |+|||||. +|.|.+.|
T Consensus 269 ~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~--G~KMSKS~-GN~v~p~d 323 (524)
T 2x1l_A 269 HMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-R--GEKMSKSI-GNVVDPVN 323 (524)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-C--SCSEETTT-EESSCHHH
T ss_pred EEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-C--CcccCCcC-CCCCCHHH
Confidence 3689998743211 11222334665442 233444443 4 58999999 88887643
No 70
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=82.23 E-value=3.6 Score=39.16 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=41.1
Q ss_pred EEEEecCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEE-EEecccc--cccc----CCCHHH-HHHHHHHHHHHHHHc
Q 022242 87 YLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVI-QLTDDEK--CMWK----NLSVEE-SQRLARENAKDIIAC 155 (300)
Q Consensus 87 ~vytG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I-~I~D~~~--~~~r----~l~~e~-i~~~~~~~~~~iiA~ 155 (300)
..+||-=|.| .+||||+.+.+ .+.++++..|..|.. .-.|++. ...+ ..++.+ +.++..+..+++.++
T Consensus 42 ~y~~gPt~yg-~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~L 120 (414)
T 3c8z_A 42 MYVCGITPYD-ATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAAL 120 (414)
T ss_dssp EEECCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCcCCC-CcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 3455655667 89999987654 333344434655544 3334442 1111 145544 344445677778889
Q ss_pred CCC-CC
Q 022242 156 GFD-VT 160 (300)
Q Consensus 156 G~d-p~ 160 (300)
|+. ++
T Consensus 121 gi~~~d 126 (414)
T 3c8z_A 121 RVLPPH 126 (414)
T ss_dssp TCCCCS
T ss_pred CCCCCc
Confidence 997 54
No 71
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=81.65 E-value=0.49 Score=46.59 Aligned_cols=52 Identities=15% Similarity=0.046 Sum_probs=20.5
Q ss_pred eeccccCchhHHH---HHHHHHHHhCCCCCcee-ecccccCCCCCCCccccCCCCCeeecCC
Q 022242 234 LIPCAIDQDPYFR---MTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 234 lvp~G~DQd~~~~---l~rdla~r~~~~kp~~i-~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
+...|.||..+.- .++-.+ +|.+.|..+ .+-++. +. |+|||||. +|.|++.|
T Consensus 279 v~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~--G~KMSKS~-GNvi~p~d 334 (536)
T 4dlp_A 279 AHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NR--GEKMSKSV-GNVIDPFE 334 (536)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHHH
T ss_pred eEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eC--CceecccC-CCCCCHHH
Confidence 3468999887311 123223 455444333 345553 45 48999999 88887643
No 72
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=80.60 E-value=0.65 Score=45.98 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=30.0
Q ss_pred ccccCchhHHHHH-HHHHHHhCCCCCceee-cccccCCCCCCCccccCCCCCeeecCC
Q 022242 236 PCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 236 p~G~DQd~~~~l~-rdla~r~~~~kp~~i~-~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
.+|.||..+.-+- --+..-+|.+.|..+. +-++.. . |+|||||. +|.|++.|
T Consensus 305 ~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~-~--G~KMSKS~-GNvv~p~d 358 (560)
T 3h99_A 305 FIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTV-N--GAKMSKSR-GTFIKAST 358 (560)
T ss_dssp EEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEE-T--TEECCTTT-TCCCBHHH
T ss_pred EeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEe-C--CeeccccC-CCcCCHHH
Confidence 4799987732111 1122335666664332 444433 4 48999999 88887643
No 73
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=79.78 E-value=3.2 Score=43.52 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=43.5
Q ss_pred CceEEEEec-CCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe-cccccc-----cc-CCCHHH-HHHHHHHHHHH
Q 022242 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-----WK-NLSVEE-SQRLARENAKD 151 (300)
Q Consensus 84 ~~~~vytG~-~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~-D~~~~~-----~r-~l~~e~-i~~~~~~~~~~ 151 (300)
+++++++|+ =|+| .+||||..... .+.++++.-|..|....| |.+..- .+ ..+..+ +.++.....++
T Consensus 33 ~k~~v~~~~Py~nG-~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~ 111 (878)
T 2v0c_A 33 GKQYVLVMFPYPSG-DLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKES 111 (878)
T ss_dssp -EEEEEECCCCCSS-CCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCC-CcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 468898884 3456 89999988654 333444444666655444 332210 01 134433 34455566777
Q ss_pred HHHcCCCCC
Q 022242 152 IIACGFDVT 160 (300)
Q Consensus 152 iiA~G~dp~ 160 (300)
+.++|+..+
T Consensus 112 ~~~LGi~~D 120 (878)
T 2v0c_A 112 LRLMGILYD 120 (878)
T ss_dssp HHHTTCCCC
T ss_pred HHHhCCccC
Confidence 788898665
No 74
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=79.10 E-value=6.6 Score=38.60 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=41.0
Q ss_pred eEEE-EecCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEE--Eecc-----------cccccc---C-CCHHH-HHH
Q 022242 86 FYLY-TGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDD-----------EKCMWK---N-LSVEE-SQR 143 (300)
Q Consensus 86 ~~vy-tG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~--I~D~-----------~~~~~r---~-l~~e~-i~~ 143 (300)
+.+| ||-=|.+ .+||||+.+.+ .+.++++..|..|... |+|. .+...+ . .++.+ +.+
T Consensus 43 v~~YvcgPTvYg-~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~ 121 (501)
T 3sp1_A 43 VKVYACGPTVYN-YAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF 121 (501)
T ss_dssp EEEEECCCBCSS-CCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred ceEEeCCCcCCC-CcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence 3444 4544447 89999977654 3333333335544443 5554 132221 2 56555 455
Q ss_pred HHHHHHHHHHHcCCCCCc
Q 022242 144 LARENAKDIIACGFDVTK 161 (300)
Q Consensus 144 ~~~~~~~~iiA~G~dp~k 161 (300)
+.....+++.++|+.++.
T Consensus 122 ~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 122 FTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 666777888899998764
No 75
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=78.57 E-value=0.83 Score=43.63 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=18.5
Q ss_pred eccccCchh-HHHHHHHHHHH-hCCCCCc-e-eecccccCCCCCCCccccCCCCCeeecC
Q 022242 235 IPCAIDQDP-YFRMTRDVAPR-IGYHKPA-L-IESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 235 vp~G~DQd~-~~~l~rdla~r-~~~~kp~-~-i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
..+|.|+-. |....+-...- .+.+.+. . +++-++. +. |+|||||. +|.|++.
T Consensus 248 ~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~--G~KMSKS~-GN~v~~~ 303 (414)
T 3c8z_A 248 QGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WD--GHKMSKSR-GNLVLVS 303 (414)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBHH
T ss_pred EEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cC--CeEccccc-CCcCCHH
Confidence 357888655 44443333333 3553333 2 3324443 35 48999999 8888764
No 76
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=78.21 E-value=1.3 Score=46.82 Aligned_cols=52 Identities=29% Similarity=0.313 Sum_probs=30.0
Q ss_pred eeccccCchh-HHH--HHHHHHHHhCCCCC-c-eeecccccCCCCCCCccccCCCCCeeecC
Q 022242 234 LIPCAIDQDP-YFR--MTRDVAPRIGYHKP-A-LIESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 234 lvp~G~DQd~-~~~--l~rdla~r~~~~kp-~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
+...|.||.. |+. +...++ -.+. .| . .+.+-++...+ |+|||||. +|.|.+.
T Consensus 551 l~~~G~D~~r~wf~~~l~~s~~-~~g~-~Pfk~v~~hG~V~d~~--G~KMSKSl-GNvV~P~ 607 (917)
T 1ffy_A 551 MYLEGSDQYRGWFNSSITTSVA-TRGV-SPYKFLLSHGFVMDGE--GKKMSKSL-GNVIVPD 607 (917)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHH-HHSS-CSBSEEEEECCEECTT--SCCCCSSS-SCCCCHH
T ss_pred EEEEEecccccHHHHHHHHHHH-hhCC-CcccceeEeeeEEcCC--CcCccccc-CCcCChH
Confidence 3468999873 432 234444 2343 33 2 23344555445 48999999 8888643
No 77
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=77.03 E-value=4 Score=39.50 Aligned_cols=72 Identities=25% Similarity=0.248 Sum_probs=40.8
Q ss_pred eEEE-EecCCCCCCcchhhhHHHH---HH-HHHHHhCCCeEEEE--Eeccc-ccccc----CCCHHHH-HHHHHHHHHHH
Q 022242 86 FYLY-TGRGPSSEALHLGHLVPFM---FT-KYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKDI 152 (300)
Q Consensus 86 ~~vy-tG~~PTg~~lHlGhli~~~---~~-~~lQ~~~~~~v~I~--I~D~~-~~~~r----~l~~e~i-~~~~~~~~~~i 152 (300)
+.+| ||-=|.+ .+||||+-+.+ .+ ++++-. |..|..+ ++|.- +...+ ..++.++ .++..+..+++
T Consensus 23 v~~yv~gPt~y~-~~HiGHar~~v~~D~l~R~lr~~-G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~ 100 (461)
T 1li5_A 23 VGMYVCGITVYD-LCHIGHGRTFVAFDVVARYLRFL-GYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF 100 (461)
T ss_dssp EEEEECCCBSSS-CCBHHHHHHHHHHHHHHHHHHHH-TCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCCC-CCcccccHHHHHHHHHHHHHHHc-CCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4444 4433337 89999987654 23 344444 5554443 56654 32221 2566554 34445677788
Q ss_pred HHcCCCC
Q 022242 153 IACGFDV 159 (300)
Q Consensus 153 iA~G~dp 159 (300)
.++|+.+
T Consensus 101 ~~LgI~~ 107 (461)
T 1li5_A 101 DALNILR 107 (461)
T ss_dssp HHTTCCC
T ss_pred HHcCCCC
Confidence 8899975
No 78
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=76.13 E-value=1 Score=43.71 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=27.0
Q ss_pred ccccCch-hHHHH--HHHHHHHhCCCCCc-eeecccccCCCCCCCccccCCCCCeeecC
Q 022242 236 PCAIDQD-PYFRM--TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 236 p~G~DQd-~~~~l--~rdla~r~~~~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
.+|.|+- +|... +.-.|- +|.+.|. .+|+-++.. . |+|||||. +|.|.+.
T Consensus 225 ~gG~Dl~fpH~~~~~aq~~a~-~g~~~~~~~~h~g~v~~-~--G~KMSKS~-GN~v~~~ 278 (461)
T 1li5_A 225 GGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHSGMVMV-D--REKMSKSL-GNFFTVR 278 (461)
T ss_dssp ECBGGGTTTHHHHHHHHHHHH-SSSCCEEEECCBCCEEE-T--TBCCCGGG-TCCCBHH
T ss_pred eccCccCchHHHHHHHHHHHh-cCCCCCcEEEEeeEEEE-C--CeEccccC-CCccChh
Confidence 4677743 34322 222221 4654343 234445443 4 58999999 8888754
No 79
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=72.01 E-value=1.3 Score=44.49 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=39.2
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCCc-eeecccccCCCCCCCccccCCCCCeeecCCC
Q 022242 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTDS 292 (300)
Q Consensus 233 clvp~G~DQd~~~~l~rdla~r~~~~kp~-~i~~~~lp~L~g~g~KMSkS~p~saI~L~D~ 292 (300)
++--+|.+|+.|+.-...+++.+|++.+. ..|..+ ++- .||||+. ++.|.|.|=
T Consensus 367 ~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~f--g~v---~kMSkR~-G~~v~L~dL 421 (607)
T 1f7u_A 367 MIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF--GMV---QGMSTRK-GTVVFLDNI 421 (607)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC--CCE---ESCCGGG-TCCCBHHHH
T ss_pred EEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecc--ccc---ccccCCC-CCcccHHHH
Confidence 33359999999999999999999986443 334344 222 3799998 889988663
No 80
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=70.54 E-value=2.2 Score=44.75 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=29.5
Q ss_pred eccccCchhHHHHHHHHHHH--hCCCCC--ceeecccccCCCCCCCccccCCCCCeeecC
Q 022242 235 IPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 235 vp~G~DQd~~~~l~rdla~r--~~~~kp--~~i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
...|.||... =.+|-++.- +....| ..+.+-++...+| +|||||. +|.|.+.
T Consensus 485 ~v~G~Dii~~-W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G--~KMSKSl-GNvIdP~ 540 (862)
T 1gax_A 485 LVTGYDILFL-WVSRMEVSGYHFMGERPFKTVLLHGLVLDEKG--QKMSKSK-GNVIDPL 540 (862)
T ss_dssp EEEEGGGTTT-THHHHHHHHHHHSSSCSBSEEEEECCEECTTS--CBCCTTT-TCCCCHH
T ss_pred EecCcccccc-HHHHHHHHHHHhcCCCcccEEEEeeeEEcCCC--CCccccC-CCCCCHH
Confidence 4588887642 223333322 222235 2334555655555 8999999 8888753
No 81
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=66.55 E-value=3.5 Score=42.80 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=30.9
Q ss_pred cCCceEEEEec-CCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEecc
Q 022242 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDD 128 (300)
Q Consensus 82 ~~~~~~vytG~-~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~D~ 128 (300)
.+++|+++.|. =||| .|||||..... ++.++++.-|..|....|-+
T Consensus 36 ~~~~f~i~~~pPy~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 36 GGPRYTVYEGPPTANG-LPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp TSCBCCBCCCCCCTTS-CCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred CCCcEEEecCCCCCCC-CCchhhhHhHHHHHHHHHHHHhcCCccccccccc
Confidence 45678899988 6787 89999988653 33445665565555554433
No 82
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=64.59 E-value=2.9 Score=43.18 Aligned_cols=52 Identities=19% Similarity=0.115 Sum_probs=27.1
Q ss_pred ccccCchh-HHHHHHHHHHH-hCC-CCC-ceeecccccCCCCCCCccccCCCCCeeecCC
Q 022242 236 PCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (300)
Q Consensus 236 p~G~DQd~-~~~l~rdla~r-~~~-~kp-~~i~~~~lp~L~g~g~KMSkS~p~saI~L~D 291 (300)
..|.||-. |....+-...- ++. +-| ..+++-++.. . |+|||||. +|.|.+.|
T Consensus 608 ~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~--G~KMSKS~-GNvv~p~d 663 (810)
T 1wkb_A 608 CSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-E--GQKMSKSK-GNVLNFID 663 (810)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-T--TBCCCTTT-TCCCBHHH
T ss_pred eecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-C--CeehhhcC-CCcCCHHH
Confidence 58999854 32222211111 221 112 2334444443 4 58999999 88887643
No 83
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=64.16 E-value=3.8 Score=43.39 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=16.3
Q ss_pred eecccccCCCCCCCccccCCCCCeeecC
Q 022242 263 IESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 263 i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
+++-++.. . |+|||||. +|.|.+.
T Consensus 639 ~~~G~v~~-~--G~KMSKS~-GNvv~p~ 662 (967)
T 1wz2_A 639 AVNGFGTL-E--GQKMSKSK-GNVLNFI 662 (967)
T ss_dssp EEECCEEE-S--SSCCCTTT-CCCCBHH
T ss_pred EEeeEEee-C--CEEccccc-cCCCCHH
Confidence 34444443 4 58999999 8888754
No 84
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=62.35 E-value=2.2 Score=41.47 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=14.2
Q ss_pred ccCCCCCCCccccCCCCCeeecC
Q 022242 268 FPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 268 lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
+-..+| +|||||. +|.|.+.
T Consensus 262 ~v~~~G--~KMSKSl-GN~i~~~ 281 (462)
T 3tqo_A 262 LLEINK--EKMSKSL-GNIISIR 281 (462)
T ss_dssp CEEETT--EECCTTT-TCCCBHH
T ss_pred EEecCC--cCccccC-CCcccHH
Confidence 334554 8999998 7777654
No 85
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=60.53 E-value=2.1 Score=41.66 Aligned_cols=16 Identities=6% Similarity=-0.110 Sum_probs=7.8
Q ss_pred CcceeeccccCchhHH
Q 022242 230 HLRCLIPCAIDQDPYF 245 (300)
Q Consensus 230 ~~~clvp~G~DQd~~~ 245 (300)
..+|+||+|+|||||.
T Consensus 232 ~~~~~vp~~~d~~~~~ 247 (451)
T 3foc_A 232 LPFTRVPLPVGTGNED 247 (451)
T ss_dssp SGGGCCBCC-------
T ss_pred CCccccccccccccch
Confidence 4689999999999994
No 86
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=54.75 E-value=8.8 Score=38.24 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=27.7
Q ss_pred eEEEEecCCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEE--Eecc
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDD 128 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~--I~D~ 128 (300)
..=|+|--|++ .|||||+-..+ .+..+.+..|..|.-. |+|+
T Consensus 106 ~ve~~spn~~~-~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNK-ELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCC-CCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 34467888887 79999988665 2334444446555543 7886
No 87
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=53.47 E-value=8 Score=40.71 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=29.1
Q ss_pred cCCceEEEEec-CCCCCCcchhhhHHHH---HHHHHHHhCCCeEEEEEe
Q 022242 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (300)
Q Consensus 82 ~~~~~~vytG~-~PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~I~ 126 (300)
.+++|++.+|. =||| .+||||.+... ++.++++.-|..+.-..|
T Consensus 46 ~~~~f~i~~~pPY~nG-~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~G 93 (917)
T 1ffy_A 46 GNETFILHDGPPYANG-NLHMGHALNKILKDFIVRYKTMQGFYAPYVPG 93 (917)
T ss_dssp TSCBCCEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCE
T ss_pred CCCceeeCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 34578888888 5687 89999988653 344466655655544433
No 88
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=52.74 E-value=12 Score=37.48 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=25.9
Q ss_pred EEecCCCCCCcchhhhHHHHH---HHHHHHhCCCeEEE--EEecc
Q 022242 89 YTGRGPSSEALHLGHLVPFMF---TKYLQDAFKVPLVI--QLTDD 128 (300)
Q Consensus 89 ytG~~PTg~~lHlGhli~~~~---~~~lQ~~~~~~v~I--~I~D~ 128 (300)
|||-=|++ .|||||+-+.++ +..+.+..|..|+- -|+|+
T Consensus 149 ~~spN~~~-plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAK-PFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTS-CCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred ecCCCCCC-CCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 67888998 799999886652 33333434655544 38884
No 89
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=50.22 E-value=13 Score=37.42 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=26.7
Q ss_pred EEecCCCCCCcchhhhHHHHH---HHHHHHhCCCeEEEE--Eecc
Q 022242 89 YTGRGPSSEALHLGHLVPFMF---TKYLQDAFKVPLVIQ--LTDD 128 (300)
Q Consensus 89 ytG~~PTg~~lHlGhli~~~~---~~~lQ~~~~~~v~I~--I~D~ 128 (300)
|+|--|++ .|||||+-..++ +..+.+..|..|.-. |+|+
T Consensus 125 ~~spN~~~-~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 125 HTSVNPTK-PLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp CCCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred eeCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 78889998 799999886652 333334446666553 7886
No 90
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=50.09 E-value=2.9 Score=42.87 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=16.3
Q ss_pred ecccccCCCCCCCccccCCCCCeeecC
Q 022242 264 ESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 264 ~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
++-++.. . |+|||||. +|.|+..
T Consensus 334 ~hG~v~~-~--G~KMSKS~-GNvV~p~ 356 (722)
T 1rqg_A 334 ANEYLTL-E--GKKFSTSR-NWAIWVH 356 (722)
T ss_dssp EECCEEE-T--TEECBTTT-TBSCBHH
T ss_pred EeeeEEe-C--CeeeeeeC-CCcCCHH
Confidence 3445543 5 48999999 8888853
No 91
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=49.37 E-value=4.8 Score=39.59 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=7.8
Q ss_pred eeecccccCCCCCCCccccCCCCCeeecC
Q 022242 262 LIESSFFPALQGETGKMSASDPNSAIYVT 290 (300)
Q Consensus 262 ~i~~~~lp~L~g~g~KMSkS~p~saI~L~ 290 (300)
.+|+-++. +. |+|||||. +|.|.+.
T Consensus 287 w~H~g~v~-~~--G~KMSKSl-GN~it~~ 311 (501)
T 3sp1_A 287 FVHGEFLI-MD--YNKMSKSR-GNFITVK 311 (501)
T ss_dssp EEEECCEE-CC-------------CCCHH
T ss_pred EEEeeeEe-eC--CeEccccC-CCcCCHH
Confidence 34445553 45 48999999 7877653
No 92
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=49.34 E-value=1.4e+02 Score=26.63 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=60.9
Q ss_pred HhcCCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccc-cccc--cCCCHHHHHHHHHH--------H
Q 022242 80 YEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCMW--KNLSVEESQRLARE--------N 148 (300)
Q Consensus 80 ~~~~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~-~~~~--r~l~~e~i~~~~~~--------~ 148 (300)
+++|+ .+..|+-|-. +-|=+-.+-. .+.|.+..|+ .+.|+++|-+ +.+- ...+..+.++.++. +
T Consensus 26 ~~~g~--HallGISpgN-syFs~d~L~~-Li~Wa~~~F~-~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i 100 (257)
T 3oqi_A 26 LKRRR--HVLVGISPFN-SRFSEDYIHR-LIAWAVREFQ-SVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFA 100 (257)
T ss_dssp HHHTC--EEEEEECTTS-TTCCHHHHHH-HHHHHHHHCS-EEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC--eEEEEeCCCC-cccCHHHHHH-HHHHHHccCC-ceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 44555 4899999986 8888888876 5789888775 4788889976 3322 33566665555532 2
Q ss_pred HHHHHHcCCCCCceEEEeccccCCcccHHHHH
Q 022242 149 AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV 180 (300)
Q Consensus 149 ~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~ 180 (300)
...+.++|.+++ -|..=+++.....|.++.
T Consensus 101 ~ral~~~g~~~~--~v~~~Sd~~~~~~Y~~l~ 130 (257)
T 3oqi_A 101 EKALEAHGGNPE--DIHTFSDFANQTAYRNLR 130 (257)
T ss_dssp HHHHHHHTCCTT--CEEETTTTTTCHHHHHHH
T ss_pred HHHHHHcCCCcc--cceeHHHhhcCHHHHHHH
Confidence 333455688776 354445555566666544
No 93
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=43.82 E-value=21 Score=34.48 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=29.5
Q ss_pred CCce-EEEEecCCCCCCcchhhhHHHHH---HHHHHHhCCCeEEE--EEeccc
Q 022242 83 GEKF-YLYTGRGPSSEALHLGHLVPFMF---TKYLQDAFKVPLVI--QLTDDE 129 (300)
Q Consensus 83 ~~~~-~vytG~~PTg~~lHlGhli~~~~---~~~lQ~~~~~~v~I--~I~D~~ 129 (300)
++++ .=|+.--||| .||+||+-...+ +..+.+..|..|.- -|+|+=
T Consensus 29 ~~~v~vE~ss~n~~~-~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 29 QESFLLEYVSANPTG-PLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp SCEEEEECCCCCSSS-SCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred CCEEEEEeCCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 3443 3367889998 799999886653 33444545665544 377764
No 94
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=39.09 E-value=85 Score=24.59 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=23.2
Q ss_pred ceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEecccc
Q 022242 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~ 130 (300)
+..++.|.- +.+|+||+--+ +...+.++..+++.-.||++
T Consensus 2 ~i~i~~GsF---DpvH~GH~~l~---~~a~~~~d~v~v~~~~~p~k 41 (158)
T 1qjc_A 2 KRAIYPGTF---DPITNGHIDIV---TRATQMFDHVILAIAASPSK 41 (158)
T ss_dssp CEEEEEECC---TTCCHHHHHHH---HHHHTTSSEEEEEEESCCSS
T ss_pred CEEEEEecC---CCCCHHHHHHH---HHHHHhCCEEEEEECCCCCC
Confidence 345777754 67999997644 34344344434444456665
No 95
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=31.95 E-value=25 Score=36.19 Aligned_cols=58 Identities=19% Similarity=0.258 Sum_probs=32.5
Q ss_pred hhhhcCcccccCCHHHHHHHHhcCCceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEEE
Q 022242 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ 124 (300)
Q Consensus 60 ~l~~Rgi~~~~~d~~~il~~~~~~~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I~ 124 (300)
.+.+.+++....+. -+.++++++.+|.- |+| .|||||+.... .+.++++.-|..|...
T Consensus 16 ~W~~~~~f~~~~~~------~~~~~~~~i~~~~Py~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~ 77 (810)
T 1wkb_A 16 RWLEAKIFEPNIRD------KPKEKKFYITVAFPYLSG-HLHVGHARTYTIPDVIARFKRMQGYNVLFP 77 (810)
T ss_dssp HHHHTTTTCCCGGG------SCGGGEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHHTCEEECC
T ss_pred HHHhCCCcccCchh------cCCCCcEEEEeCCCCCCC-CCccccchhHHHHHHHHHHHHcCCCccCcC
Confidence 44456666543320 01234677777653 466 89999988654 2334455446655554
No 96
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=31.39 E-value=1.2e+02 Score=24.56 Aligned_cols=48 Identities=19% Similarity=0.390 Sum_probs=27.3
Q ss_pred eEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEecc-ccccccC-CCHHHHHH
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD-EKCMWKN-LSVEESQR 143 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~-~~~~~r~-l~~e~i~~ 143 (300)
..+|.|.- +.+|.||+--+ +...+.++ .+++.++.+ +| ++ .+.++-.+
T Consensus 4 i~i~~GsF---DPiH~GHl~ii---~~A~~~~D-~viv~v~~~~~K---~~~~~~~eR~~ 53 (157)
T 3nv7_A 4 VGIYPGTF---DPVTNGHIDII---HRSSELFE-KLIVAVAHSSAK---NPMFSLDERLK 53 (157)
T ss_dssp EEEEEECC---TTCCHHHHHHH---HHHHTTSS-EEEEEEECCGGG---CCSSCHHHHHH
T ss_pred EEEEEEEc---CCCCHHHHHHH---HHHHHhCC-ceEEEEccCCCC---CCCCCHHHHHH
Confidence 45777744 78999997655 33333344 345555544 44 33 66665443
No 97
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=28.75 E-value=1.8e+02 Score=23.10 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=25.4
Q ss_pred ccccCchhHHHHHHHHHHHhCCCCCceeecccccCCCC-CCCccccCC
Q 022242 236 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG-ETGKMSASD 282 (300)
Q Consensus 236 p~G~DQd~~~~l~rdla~r~~~~kp~~i~~~~lp~L~g-~g~KMSkS~ 282 (300)
-++.++..-....+++.++.|+++-. +. -+|.+.. .+.|.|+|.
T Consensus 91 vvs~Et~~~~~~l~~~~~~~G~~~l~-V~--~v~~~~~~~~~~iSST~ 135 (148)
T 3do8_A 91 VVSPETYEMALKINQKREELGKRKIT-IV--KVDWMMAEDGKPISSTR 135 (148)
T ss_dssp EECTTTHHHHHHHHHHHHHHTCCCCE-EE--EEECCC-------CCCC
T ss_pred EEChhhcccHHHHHHHHHHcCCCeeE-EE--EeccEEcCCCCEEEHHH
Confidence 46788888888889999999874322 22 2333332 358999885
No 98
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=28.26 E-value=63 Score=34.02 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=26.1
Q ss_pred CceEEEEecC-CCCCCcchhhhHHHH---HHHHHHHhCCCeEEE
Q 022242 84 EKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVI 123 (300)
Q Consensus 84 ~~~~vytG~~-PTg~~lHlGhli~~~---~~~~lQ~~~~~~v~I 123 (300)
++|+++.|.= ||| .||+||.+... ++.++++.-|..|.-
T Consensus 34 ~kf~i~~~pPy~nG-~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~ 76 (967)
T 1wz2_A 34 KKFYITVAFPYLSG-HLHVGHARTYTIPDVIARFKRMQGYNVLF 76 (967)
T ss_dssp GCCBEEECCCBCSS-CCBHHHHHHHHHHHHHHHHHHHTTCCCBC
T ss_pred CcEEEEeCCCCCCC-CcchhhhHHHHHHHHHHHHHHcCCCccCC
Confidence 5788988874 566 89999988653 334466654544443
No 99
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=25.79 E-value=10 Score=39.65 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=11.6
Q ss_pred CccccCCCCCeeecC
Q 022242 276 GKMSASDPNSAIYVT 290 (300)
Q Consensus 276 ~KMSkS~p~saI~L~ 290 (300)
+|||||. +|.|...
T Consensus 636 ~KMSKSk-GNvVdP~ 649 (878)
T 2v0c_A 636 AVMSKSK-GNGVMVG 649 (878)
T ss_dssp EECSGGG-TCCCBHH
T ss_pred HHhhccC-CCcccHH
Confidence 7999999 8888753
No 100
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=24.82 E-value=1.1e+02 Score=24.99 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=25.7
Q ss_pred CceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEe-ccccccccC-CCHHHHH
Q 022242 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEKCMWKN-LSVEESQ 142 (300)
Q Consensus 84 ~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~-D~~~~~~r~-l~~e~i~ 142 (300)
++..+|.|-- +.+|.||+..+. ...+.++. +++.++ +++| +. .+.++-.
T Consensus 3 ~ki~i~~GsF---DPiH~GHl~i~~---~a~~~~d~-viv~v~~~p~K---~~~~~~~~R~ 53 (168)
T 3f3m_A 3 HTIAVIPGSF---DPITYGHLDIIE---RSTDRFDE-IHVCVLKNSKK---EGTFSLEERM 53 (168)
T ss_dssp CCEEEEEECC---TTCCHHHHHHHH---HHGGGSSE-EEEEECC--------CCSCHHHHH
T ss_pred ceEEEEEEEc---CcCCHHHHHHHH---HHHHhCCE-EEEEEcCCCCC---CCCCCHHHHH
Confidence 3567888854 789999976653 33333443 444444 4544 23 5655543
No 101
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=24.75 E-value=2.1e+02 Score=22.69 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEecc
Q 022242 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~ 128 (300)
+..++.|.- +.+|+||+.-+ +...+.++. +++.++++
T Consensus 3 ~i~i~~GsF---DpvH~GH~~li---~~a~~~~d~-v~v~~~~~ 39 (169)
T 1o6b_A 3 SIAVCPGSF---DPVTYGHLDII---KRGAHIFEQ-VYVCVLNN 39 (169)
T ss_dssp CEEEEEECC---TTCCHHHHHHH---HHHHHHSSE-EEEEECCC
T ss_pred cEEEEEEee---CCCCHHHHHHH---HHHHHhCCE-EEEEECCC
Confidence 356777754 67999997654 333333343 44444443
No 102
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=24.45 E-value=2.3e+02 Score=23.49 Aligned_cols=49 Identities=24% Similarity=0.221 Sum_probs=27.5
Q ss_pred ceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccccccccC-CCHHHHH
Q 022242 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQ 142 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~~~~~r~-l~~e~i~ 142 (300)
+..+|.|.- +.+|+||+--+... .+.++.-+++...|+++ +. .+.++-.
T Consensus 23 ki~v~~GsF---DpiH~GHl~li~~A---~~~~d~viv~v~~~p~K---~~l~s~eeR~ 72 (187)
T 3k9w_A 23 VVAVYPGTF---DPLTRGHEDLVRRA---SSIFDTLVVGVADSRAK---KPFFSLEERL 72 (187)
T ss_dssp CEEEEEECC---TTCCHHHHHHHHHH---HHHSSEEEEEEECCGGG---CCSSCHHHHH
T ss_pred EEEEEEEeC---CcCcHHHHHHHHHH---HHHCCcEEEEEecCCcc---CCCCCHHHHH
Confidence 577888844 78999997665333 23234322333345544 23 5665543
No 103
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=22.90 E-value=1.6e+02 Score=24.48 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=29.8
Q ss_pred CCceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEe-ccccccccC-CCHHHHHH
Q 022242 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEKCMWKN-LSVEESQR 143 (300)
Q Consensus 83 ~~~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~-D~~~~~~r~-l~~e~i~~ 143 (300)
+.+..+|.|-- +.+|.||+--+. ...+.++ .+++.++ +++| +. .+.++-.+
T Consensus 20 ~mki~i~~GsF---DPiH~GHl~ii~---~A~~~~D-~Viv~v~~np~K---~~~~s~eeR~~ 72 (177)
T 3nbk_A 20 HMTGAVCPGSF---DPVTLGHVDIFE---RAAAQFD-EVVVAILVNPAK---TGMFDLDERIA 72 (177)
T ss_dssp CCCEEEEEECC---TTCCHHHHHHHH---HHHHHSS-EEEEEECCCTTS---CCSSCHHHHHH
T ss_pred CCEEEEEEEee---CCCCHHHHHHHH---HHHHHCC-EEEEEEcCCCCC---CCCCCHHHHHH
Confidence 45678888854 779999976653 3333344 3444444 4544 23 66666544
No 104
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=22.87 E-value=14 Score=38.68 Aligned_cols=12 Identities=50% Similarity=0.462 Sum_probs=10.2
Q ss_pred ccccCCCCCeeec
Q 022242 277 KMSASDPNSAIYV 289 (300)
Q Consensus 277 KMSkS~p~saI~L 289 (300)
|||||. +|.|..
T Consensus 639 KMSKSk-GNvVdP 650 (880)
T 4arc_A 639 KMSKSK-NNGIDP 650 (880)
T ss_dssp ECCTTT-TCCCCH
T ss_pred cccCcC-CCCCCH
Confidence 999999 887764
No 105
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=22.76 E-value=22 Score=19.94 Aligned_cols=16 Identities=38% Similarity=0.731 Sum_probs=12.7
Q ss_pred HHHHHHHhCCCCCCHH
Q 022242 30 YDKLIDKFGCQRLDQS 45 (300)
Q Consensus 30 y~kl~~~fg~~~~~~~ 45 (300)
+-|||++||-+.|+-.
T Consensus 3 fgklikkfgrkaisya 18 (26)
T 2g9p_A 3 FGKLIKKFGRKAISYA 18 (26)
T ss_dssp HHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHhHHHHHHH
Confidence 5689999999777654
No 106
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure INI PSI-2; 2.51A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=22.08 E-value=20 Score=34.56 Aligned_cols=47 Identities=17% Similarity=0.441 Sum_probs=36.1
Q ss_pred hhhhhhccCcccccCcccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhhCCCc
Q 022242 6 EKQREEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPP 58 (300)
Q Consensus 6 ~~~~~~~~~~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~ 58 (300)
.|+..=.+-.+|||+-.++ ...|+|+|=++-|-. |-.-||+++|+.|
T Consensus 230 AATaDL~DvNmIDpfHLeAYg~~tVNYNRDvE~FPv------L~~i~ekI~G~~p 278 (507)
T 3bh1_A 230 AATVDLNDANVIDHFHLAAYGEQTVNYNRDVEAFPL------LKTLLERLMGESP 278 (507)
T ss_dssp HTCCSGGGSEEECHHHHHHHSCCCEEEHHHHHHHHH------HHHHHHHHHSSCS
T ss_pred HhhcCcccccccchhhHHhhCCcccccccccHHHHH------HHHHHHHHcCCCC
Confidence 3344445667899987655 668999999999965 7777899999866
No 107
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=21.96 E-value=2.9e+02 Score=24.36 Aligned_cols=92 Identities=11% Similarity=0.094 Sum_probs=61.2
Q ss_pred eEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEeccc-cccc--cCCCHHHHHHHHHH--------HHHHHHH
Q 022242 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCMW--KNLSVEESQRLARE--------NAKDIIA 154 (300)
Q Consensus 86 ~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~D~~-~~~~--r~l~~e~i~~~~~~--------~~~~iiA 154 (300)
-.+..|+-|-. +-|=+-.+-. .+.|.+..|+ .+.|+++|-+ +.+- ...+..+.++.++. +...+.+
T Consensus 30 ~HallGVSpgN-syFs~drl~~-li~Wa~~~F~-~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~~ 106 (247)
T 3oqv_A 30 EHALIGISAGN-SYFSQKNTVM-LLQWAGQRFE-RTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLES 106 (247)
T ss_dssp EEEEEEEESSC-TTCCHHHHHH-HHHHHHHHEE-EEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCC-cccCHHHHHH-HHHHHHccCC-ceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999986 8888888876 5789888764 4778889986 3322 23566555555532 2334556
Q ss_pred cCCCCCceEEEeccccCCcccHHHHH
Q 022242 155 CGFDVTKTFIFSDFDYVGGAFYKNMV 180 (300)
Q Consensus 155 ~G~dp~kt~I~~ns~~~~~~~~~~~~ 180 (300)
+|.+.++.-|..=|++.....|.++.
T Consensus 107 ~~~~~~~~rv~~~Sd~~~~~~Y~~l~ 132 (247)
T 3oqv_A 107 VGDHAERFRVRSLSELQETPEYRAVR 132 (247)
T ss_dssp HCTTGGGEEEEEHHHHTTSHHHHHHH
T ss_pred hCCCccCceeeeHHHhhCCHHHHHHH
Confidence 78888776565556665666676655
No 108
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=21.73 E-value=1.8e+02 Score=23.48 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=21.7
Q ss_pred ceEEEEecCCCCCCcchhhhHHHHHHHHHHHhCCCeEEEEEe-cccc
Q 022242 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEK 130 (300)
Q Consensus 85 ~~~vytG~~PTg~~lHlGhli~~~~~~~lQ~~~~~~v~I~I~-D~~~ 130 (300)
+..+|.|.- +.+|.||+--+ ....+.++ .+++.++ |++|
T Consensus 6 ~i~i~~GsF---DPiH~GHl~li---~~A~~~~d-~viv~v~~~~~K 45 (162)
T 4f3r_A 6 PIAIYPGTF---DPLTNGHVDII---ERALPLFN-KIIVACAPTSRK 45 (162)
T ss_dssp CEEEEEECC---TTCCHHHHHHH---HHHGGGCS-EEEEEECCC---
T ss_pred EEEEEEEEc---CCCCHHHHHHH---HHHHHHCC-cEEEEEecCCcc
Confidence 456777744 78999997655 33333344 3555555 4434
No 109
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=21.69 E-value=66 Score=28.98 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHhCCCCCcee-ecccccCCCCCCCccccCCCCCeeecCCCHHH
Q 022242 242 DPYFRMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (300)
Q Consensus 242 d~~~~l~rdla~r~~~~kp~~i-~~~~lp~L~g~g~KMSkS~p~saI~L~D~p~~ 295 (300)
-|-..+.+.+++.+|++ ..+ -.+.+..-+ |..||++. +||+++..+
T Consensus 151 ~qq~~~l~~~~~dl~~~--v~iv~vp~vr~~d--GlaiSSrn----~yLs~~er~ 197 (280)
T 2ejc_A 151 AQQFRVLRRMVRDLNMD--VEMIECPIVREPD--GLAMSSRN----VYLSPEERQ 197 (280)
T ss_dssp HHHHHHHHHHHHHTTCC--CEEEEECCCBCTT--SCBCCGGG----GGCCHHHHH
T ss_pred CcCHHHHHHHHHHcCCe--EEEEeeCcEEcCC--CCEeccCc----ccCCHHHHH
Confidence 55566779999999873 222 234333333 47999884 677765433
Done!