RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022242
(300 letters)
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 391 bits (1006), Expect = e-136
Identities = 193/301 (64%), Positives = 240/301 (79%), Gaps = 4/301 (1%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 25 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 84
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
LRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPL
Sbjct: 85 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPL 144
Query: 122 VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNM 179
VIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+
Sbjct: 145 VIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNV 204
Query: 180 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239
VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAI
Sbjct: 205 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAI 264
Query: 240 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299
DQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K
Sbjct: 265 DQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTK 324
Query: 300 V 300
V
Sbjct: 325 V 325
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 383 bits (986), Expect = e-133
Identities = 130/288 (45%), Positives = 182/288 (63%), Gaps = 16/288 (5%)
Query: 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDL 73
E V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD
Sbjct: 4 EFKVTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDY 61
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW 133
+ IL YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++
Sbjct: 62 DLILKDYEEGRGFFLYTGRGPSGP-MHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLF 120
Query: 134 K-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
K NL+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++
Sbjct: 121 KENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAK 178
Query: 193 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252
+FGFT + IG + FP +Q P+F CLIP AIDQDPY+R+ RD A
Sbjct: 179 AVFGFTEQSKIGMIFFPAIQIAPTFFERKR----------CLIPAAIDQDPYWRLQRDFA 228
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300
+GY+K A + S F P+L +GKMSAS P +AIY+TDS + ++ KV
Sbjct: 229 ESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKV 276
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 385 bits (990), Expect = e-133
Identities = 193/301 (64%), Positives = 240/301 (79%), Gaps = 4/301 (1%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 72 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 131
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
LRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPL
Sbjct: 132 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPL 191
Query: 122 VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNM 179
VIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+
Sbjct: 192 VIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNV 251
Query: 180 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239
VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAI
Sbjct: 252 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAI 311
Query: 240 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299
DQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K
Sbjct: 312 DQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTK 371
Query: 300 V 300
V
Sbjct: 372 V 372
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 379 bits (975), Expect = e-131
Identities = 161/307 (52%), Positives = 222/307 (72%), Gaps = 8/307 (2%)
Query: 2 DKNEEKQREEEREQVVSPWEVS-------SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLT 54
+ E + + +EQVV+PW+V + IDYDKLI +FG + +++ + R +++T
Sbjct: 12 QQVSELKSTDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVT 71
Query: 55 GRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ 114
GR PH FLR+G+FF+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ
Sbjct: 72 GREPHHFLRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQ 131
Query: 115 DAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 173
+ F VPLVI+LTDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GG
Sbjct: 132 EVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGG 191
Query: 174 AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 233
AFY+ +V+V++ +T + +FGF D IGK F +Q +FPSSFP++ D C
Sbjct: 192 AFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPC 251
Query: 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 293
LIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+
Sbjct: 252 LIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTP 311
Query: 294 KAIKNKV 300
K I+ K+
Sbjct: 312 KQIQKKI 318
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 370 bits (952), Expect = e-128
Identities = 163/289 (56%), Positives = 218/289 (75%), Gaps = 4/289 (1%)
Query: 15 QVVSPWEVS--SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
PWEV ++ IDY+KLIDKFGC+ + + +++R++RLTG+ H F RR +F +HRD
Sbjct: 2 PGSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRD 61
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
ILD YEKGE FYLYTGRGPSSE+LH+GHLVPF+FTKYLQD FKVPLVIQLTDDEK +
Sbjct: 62 FEKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFI 121
Query: 133 WKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKV 191
+K+ L++EE+ A EN KDIIACGFD TFIF++ +Y+ Y +++++ K ++ +++
Sbjct: 122 FKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYI-AELYPDILRIEKKISCSQI 180
Query: 192 VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251
IFGF ++GK +FP VQA P+F SSFPH+F G+ + CL+P AIDQDPYFRM RDV
Sbjct: 181 KSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDV 240
Query: 252 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300
APR+GY KP+ I S F P+LQG KMSAS NS+I+V D+ ++I+NK+
Sbjct: 241 APRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKI 289
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 360 bits (924), Expect = e-124
Identities = 160/294 (54%), Positives = 217/294 (73%), Gaps = 5/294 (1%)
Query: 8 QREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF 67
E VV+PW V G ++YDKLI FG +D++L++R++R+ G+ PH FLRRG+F
Sbjct: 3 HHHHHHEAVVTPWSVE--GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIF 60
Query: 68 FAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
F+HRDLN +LD YE G+ FYLYTGRGPSSE++H+GHL+PFMFTK+LQD+F+VPLVIQ+TD
Sbjct: 61 FSHRDLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTD 120
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
DEK ++N+ +E+ + + EN KDIIA GFD TFIF DFDY+ G Y+ + K+ + T
Sbjct: 121 DEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM-GCMYRTVAKIERAFT 179
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS-GKDHLRCLIPCAIDQDPYFR 246
++V G FGF ED+ G+ FP +QA PSF ++FPH+F ++ CLIP AIDQDPYFR
Sbjct: 180 ASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFR 239
Query: 247 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300
+TRD+APR+GY KPA+I S FFP L G GKMS+S A+ +TD+ K +K+K+
Sbjct: 240 LTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGT-AVLLTDTEKMVKDKI 292
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 353 bits (908), Expect = e-122
Identities = 136/302 (45%), Positives = 198/302 (65%), Gaps = 10/302 (3%)
Query: 5 EEKQREEEREQVVSPWEVSSSG------KIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPP 58
+ + EQ ++PW+V IDYDK+I++FGC++ +Q+L DR+++L+G+P
Sbjct: 15 QTQGPGSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPA 74
Query: 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFK 118
H F RRG+ FAHRD N +LD FYLYTGRGPSS+ +H+GH +PF+ KY+QDAFK
Sbjct: 75 HYFFRRGIVFAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFK 134
Query: 119 VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN 178
+ LVIQ+TDDEK +WK++ +E++ REN KDI+ GFD T+IFS+ + F +N
Sbjct: 135 IRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEA-SHHFEEN 193
Query: 179 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 238
++K++K + N+ + +FGF +IG+V FP + P F SSF + G CL+P A
Sbjct: 194 ILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAA 250
Query: 239 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 298
+DQDP+FR+ RD A +G KP+ I S P L+G KMSASDPNS+IY+ D+ I+
Sbjct: 251 VDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRK 310
Query: 299 KV 300
K+
Sbjct: 311 KI 312
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 341 bits (876), Expect = e-117
Identities = 83/294 (28%), Positives = 153/294 (52%), Gaps = 8/294 (2%)
Query: 10 EEEREQVVSPWEV---SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGV 66
Q +P ++ ++ DY++LI+ G + + R+++L+G+ PH +L RGV
Sbjct: 4 HHHHHQTQTPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGV 63
Query: 67 FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT 126
F A + L+ LD E + +++ + P E + L + F +YLQDAF + ++IQ+
Sbjct: 64 FLAEKSLDKFLDDVEAKKPTFIFIQKYPQKE-VALEEYITLEFARYLQDAFNIQVIIQIL 122
Query: 127 DDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 186
DD K + + ++ E+ +++ + K I+A GF+ KTFI++D+ Y G Y+ + V K
Sbjct: 123 DDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYF-GKMYRTISLVEKAT 181
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 246
YN V F F D+IGK++ P + F S+ H FS RCL+ +I +
Sbjct: 182 AYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHS 239
Query: 247 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300
+ +A + + +P ++ P L G K +++I ++D+AK ++ K+
Sbjct: 240 IIDQIATTLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVERKI 292
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 317 bits (814), Expect = e-107
Identities = 137/356 (38%), Positives = 186/356 (52%), Gaps = 56/356 (15%)
Query: 1 MDKNEEKQREEEREQVVSPWEV------SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLT 54
M + Q P + + + + Y+ +I +FG + L+ R + +T
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMMETDATAEAAAVAYEDIITRFGAAPITDDLLKRFETVT 60
Query: 55 GRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ 114
G H LRRG+F+AHRD + L YEKG Y+YTGRGPSS ALHLGHL+PF+FTKYLQ
Sbjct: 61 GTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFIFTKYLQ 120
Query: 115 DAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG- 172
DAFK +VIQ+TDDEK + ++LS E REN KDIIACGFD KTFIF + Y+
Sbjct: 121 DAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSL 180
Query: 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH-- 230
Y+ V + + +++ FGF+ + ++G +FPP Q +P + + F L +
Sbjct: 181 KNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLP 240
Query: 231 ----------------------------------------------LRCLIPCAIDQDPY 244
CLI I+QDPY
Sbjct: 241 VGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPY 300
Query: 245 FRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300
FR+ RD+APR+G+ K A + F P LQG KMSASDPNSAIY+TD+ IKNK+
Sbjct: 301 FRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKNKI 356
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 244 bits (625), Expect = 1e-79
Identities = 49/248 (19%), Positives = 91/248 (36%), Gaps = 18/248 (7%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
+ L+ + + G F Y G PS +H+ + + +
Sbjct: 17 QLLSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGR-IHIAQALITVMNTNNMIECGGQM 75
Query: 122 VIQLTDDEKCM--WKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYK 177
+I + D M N + + + L R + ACG ++ T S+F ++ +
Sbjct: 76 IIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIE 135
Query: 178 NMVKVAKCVTYNKV---VGIFGFTGEDHI--GKVSFPPVQAVPSFPSSFPHLFSGKDHLR 232
M+ +A+ T ++V I G D + ++ +P +QA F
Sbjct: 136 RMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFELVPEG--------I 187
Query: 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 292
+ IDQ + + A G P + +L G KMS SDP AI++ D+
Sbjct: 188 DICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247
Query: 293 AKAIKNKV 300
+ + K+
Sbjct: 248 EQEVSEKI 255
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 108 bits (272), Expect = 2e-27
Identities = 49/244 (20%), Positives = 86/244 (35%), Gaps = 36/244 (14%)
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEK 130
+ D+L+ + LY G P+ H G+ VP A +V + L D
Sbjct: 28 IIKDVLEV--QKRHLKLYWGTAPTGR-PHCGYFVPMTKLADFLKAGCEV--TVLLADLHA 82
Query: 131 CMWKNLSVEESQRLARENAKDII--------ACGFDVTKT-FIFSDFDYVGGAFYKNMVK 181
+ + E + AK + + K F+ + + ++ +
Sbjct: 83 FLDNMKAPLE---VVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFR 139
Query: 182 VAKCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237
++ V+ N + + +P +QA+ L
Sbjct: 140 LSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQALDEQ------------FLDVDCQF 187
Query: 238 A-IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 296
+DQ F + + P +GY K A + + P L GKMSASDPNS I + + K +
Sbjct: 188 GGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQG-GKMSASDPNSKIDLLEEPKQV 246
Query: 297 KNKV 300
K K+
Sbjct: 247 KKKI 250
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 98.7 bits (246), Expect = 8e-24
Identities = 43/243 (17%), Positives = 85/243 (34%), Gaps = 33/243 (13%)
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMF-TKYLQDA---FKVPLVIQ--LTD 127
+++ K Y G PS +H+ + L F + +
Sbjct: 45 DELRVKLLLKRKLICYDGFEPSGR-MHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLN 103
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMV-KVAK 184
++ M +L ++ +++ + +CG ++ S+ Y ++V +++
Sbjct: 104 NK--MSGDL--KKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISR 159
Query: 185 CVTYNKVVGIFGFTG-----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCA 238
N++ G E++ ++ +P +Q F L +
Sbjct: 160 SFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCADIF------------FLNVDICQLG 207
Query: 239 IDQDPYFRMTRDVAPRIGYHKPALIES-SFFPALQGETGKMSASDPNSAIYVTDSAKAIK 297
IDQ + R+ K +I S P L KMS SD NSAI++ DS +
Sbjct: 208 IDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDVN 267
Query: 298 NKV 300
K+
Sbjct: 268 RKI 270
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 93.8 bits (233), Expect = 1e-21
Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 32/235 (13%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFM--FTKYLQDAFKVPLVI----QLTDDEKCMWK 134
EK Y G PS +H+ + K + + L +D+ +
Sbjct: 36 EKKPLIRCYDGFEPSGR-MHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDK--VGG 92
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDFDYVGGAFY-KNMVKVAKCVTYNKV 191
L E+ + + R + A G D+ K F++ S+ Y + ++ + + T ++
Sbjct: 93 EL--EKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARI 150
Query: 192 ---VGIFGFTGEDH-IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFR 246
I G T +V +P +Q F L+ + +DQ
Sbjct: 151 KKCCTIMGKTEGTLTAAQVLYPLMQCCDIF------------FLKADICQLGLDQRKVNM 198
Query: 247 MTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300
+ R+ IG KP ++ L+ KMS SDP+SAI++ D+ + + K+
Sbjct: 199 LAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKI 253
Score = 74.5 bits (183), Expect = 5e-15
Identities = 19/164 (11%), Positives = 46/164 (28%), Gaps = 16/164 (9%)
Query: 139 EESQRLARENAKDIIACGFDVTKTFIF-SDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFG 196
++ + N + A G + + ++ + V +A+ + V ++G
Sbjct: 438 KDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG 497
Query: 197 FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 256
+ G+V ++ L H + R+
Sbjct: 498 GEVRN-AGQVIAALMRVAT-------ALMLSVSH----VISTSLDGHINAFAREYTKERI 545
Query: 257 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300
PAL + + +Y+ D+ I+ K+
Sbjct: 546 --DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKI 587
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 82.9 bits (205), Expect = 3e-18
Identities = 53/252 (21%), Positives = 91/252 (36%), Gaps = 41/252 (16%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMW 133
++ G + Y G PS H+G LV K L +A + +
Sbjct: 25 ELKGLLASGARIKGYIGYEPSGV-AHIGWLVWMYKVKDLVEAGVDF--SVLEATWHAYIN 81
Query: 134 KNL--SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKVAKCVTYNK 190
L ++ + AR + + A G V + + ++ +++VAK + +
Sbjct: 82 DKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLAR 141
Query: 191 V------VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDP 243
V +G E K+ +P +Q F ++ I +DQ
Sbjct: 142 VRRALTIMGRRAEEAEVDASKLIYPLMQVSDIF------------YMDLDIALGGMDQRK 189
Query: 244 YFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDPNSAIY 288
+ RDVA ++G KP I + +LQG KMS S P +A++
Sbjct: 190 AHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVF 249
Query: 289 VTDSAKAIKNKV 300
V DS I+ K+
Sbjct: 250 VVDSDDDIRRKI 261
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 75.7 bits (186), Expect = 9e-16
Identities = 49/266 (18%), Positives = 88/266 (33%), Gaps = 54/266 (20%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDA-FKVPLVI-----QLTD 127
++ +E G Y G S +HLG L+ Q A K + + + D
Sbjct: 23 NLRHLFEIGAPLQHYIGFEISGY-IHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWIND 81
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMVKVAKC 185
+ + + K I G D K S+ G +++ ++ ++K
Sbjct: 82 KLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEI-LEKGDYWQTVIDISKN 140
Query: 186 VTYNKVVGIF-----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAI 239
VT ++V+ K+ +P +Q F + + +
Sbjct: 141 VTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIF------------YQGVTIAHAGM 188
Query: 240 DQDPYFRMTRDVAPRIGYH---------KPALIESSFFPALQGE---------------- 274
DQ + +VA ++ YH KP + LQ
Sbjct: 189 DQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKA 248
Query: 275 TGKMSASDPNSAIYVTDSAKAIKNKV 300
KMS S P SA+++ DS + I+ K+
Sbjct: 249 QMKMSKSKPYSAVFIHDSPEEIRQKL 274
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 74.8 bits (184), Expect = 2e-15
Identities = 46/239 (19%), Positives = 85/239 (35%), Gaps = 31/239 (12%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
+ L K + +Y G + + H+ + VP A +V ++ L D+
Sbjct: 25 EKLKEILKERELKIYWGTATTGK-PHVAYFVPMSKIADFLKAGCEVTILFADLHAYL-DN 82
Query: 129 EKCMWKNLSVEESQRLARENAKDII-ACGFDVTKTFIFSDFDYVGGAFY-KNMVKVAKCV 186
K W+ +E K ++ + G + K DY Y ++ +++ V
Sbjct: 83 MKAPWEL--LELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVV 140
Query: 187 TYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQ 241
T + + + +P +QA+ +L+ IDQ
Sbjct: 141 TQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEE------------YLKVDAQFGGIDQ 188
Query: 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300
F P +GY K + + P L G KMS+S+ S I + D + +K K+
Sbjct: 189 RKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKL 245
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 70.0 bits (172), Expect = 7e-14
Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 37/239 (15%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
++ E EK Y G PS E +HLGH++ LQ+A F++ +++ L +
Sbjct: 22 ELRQLIETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEIIVLLADIHAYLNE- 79
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFY-KNMVKVAKCV 186
K + EE +A N K IA G D ++ F+ +Y Y +++K+A+
Sbjct: 80 -----KG-TFEEIAEVADYNKKVFIALGLDESRAKFVLGS-EYQLSRDYVLDVLKMARIT 132
Query: 187 TYNKVVGIFGFTG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQ 241
T N+ + + ++ +P +QA+ HL + IDQ
Sbjct: 133 TLNRARRSMDEVSRRKEDPMVSQMIYPLMQALDIA------------HLGVDLAVGGIDQ 180
Query: 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300
+ R+ PR+GY P + + L G KMS+S + I V D + ++ K+
Sbjct: 181 RKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPEEVERKI 236
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 55.7 bits (135), Expect = 3e-09
Identities = 51/238 (21%), Positives = 91/238 (38%), Gaps = 41/238 (17%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
+ L K ++ Y G PS + +HLGH + LQ+A F + +++ L
Sbjct: 18 EELREVLKKDEKSAYIGFEPSGK-IHLGHYLQIKKMIDLQNAGFDIIILLADLAAYLNQ- 75
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI-FSDFDYVGGAFYKNMVKVAKCVT 187
K +E +++ N K A G ++ S+F + N+ ++A T
Sbjct: 76 -KGEL-----DEIRKIGDYNKKVFEAMGLK--AKYVYGSEFQL-DKDYTLNVYRLALKTT 126
Query: 188 YNKVVGIFGFTG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQD 242
+ + +V +P +Q S +L + ++Q
Sbjct: 127 LKRARRSMELIAREDENPKVAEVIYPIMQVNTSH------------YLGVDVAVGGMEQR 174
Query: 243 PYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKV 300
+ R++ P+ K I + L GE GKMS+S N I V DS + I+ K+
Sbjct: 175 KIHMLARELLPK----KVVCIHNPVLTGLDGE-GKMSSSKGN-FIAVDDSPEEIRAKI 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 3e-06
Identities = 50/366 (13%), Positives = 98/366 (26%), Gaps = 134/366 (36%)
Query: 32 KLIDKF--GCQRL----DQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEK 85
K + F C+ L + + D + T H L+ E
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTT-------------HISLDHHSMTLTPDEV 303
Query: 86 ---FYLYTGRGPSS---EALHLGHLVPFMFTKYLQDAF------------KVPLVIQLT- 126
Y P E L + + ++D K+ +I+ +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 127 -------------------DDEK------CM-WKNLSVEESQ---------RLARENAKD 151
+ W ++ + L + K+
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 152 -------------------------IIACGFDVTKTFIFSDF--DYVGGAFY-------K 177
I+ +++ KTF D Y+ FY K
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 178 NMVKVAKCVTYNKVVGIFGFTGEDHIGKV--SFPPVQAVPSFPSSFPHLFSGKDHLRCLI 235
N+ + + V F F K+ A S ++ L K ++
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLE----QKIRHDSTAWNASGSILNTLQQLKFYKPYI---- 534
Query: 236 PCAIDQDPYF-RMTRDVA---PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291
D DP + R+ + P+I + LI S + L+ ++ + AI+ +
Sbjct: 535 ---CDNDPKYERLVNAILDFLPKIEEN---LICSKYTDLLR-----IALMAEDEAIF-EE 582
Query: 292 SAKAIK 297
+ K ++
Sbjct: 583 AHKQVQ 588
Score = 33.7 bits (76), Expect = 0.087
Identities = 46/346 (13%), Positives = 92/346 (26%), Gaps = 124/346 (35%)
Query: 25 SGKIDY----------DKLIDKFGCQRLDQSL------------------VDRVQRLTGR 56
+G+ Y D +D F C+ + V RL
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW- 69
Query: 57 PPHVFLRRGVFFAHRDLNDILDA-YEKGEKFYLYTG-----RGPS------SEALHLGHL 104
L + + + ++L Y+ +L + R PS E +
Sbjct: 70 ---TLLSKQEEMVQKFVEEVLRINYK-----FLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 105 VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEES-----------QRLARENAKDII 153
+F KY + ++ ++L + + L ++ +A +
Sbjct: 122 DNQVFAKY--NVSRLQPYLKLR---QAL-LELRPAKNVLIDGVLGSGKTWVALDVCLS-- 173
Query: 154 ACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF----------GFTGEDHI 203
+ V F F+ + + C + V+ + + DH
Sbjct: 174 ---YKVQCKMDF-------KIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH- 219
Query: 204 GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAID--QDP----YF----RM---TRD 250
S + S + L K + CL+ + Q+ F ++ TR
Sbjct: 220 ---SSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 251 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 296
L T + D +S D K++
Sbjct: 275 --------------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 46.4 bits (111), Expect = 5e-06
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 240 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 291
DQ P TR++ R + L P L G KMS S N AI + D
Sbjct: 171 DQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGD 228
Query: 292 SAKAIKNKV 300
SA + KV
Sbjct: 229 SADEVARKV 237
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group
I intron; HET: TYR; 1.95A {Neurospora crassa} PDB:
2rkj_A
Length = 392
Score = 44.2 bits (105), Expect = 3e-05
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG + + + + Y G P++ +LH+GHL+P M ++
Sbjct: 43 RGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLE 95
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 43.3 bits (103), Expect = 5e-05
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 240 DQDPYFRMTRDVAPRIGYH------KP-ALIESSF--FPALQGETGKMSASDPNSAIYVT 290
DQ + +TR++A R + +P AL+ P + G KMS S N I +
Sbjct: 150 DQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLL 207
Query: 291 DSAKAIKNKV 300
+ ++I K+
Sbjct: 208 EPEESIWQKI 217
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 43.3 bits (103), Expect = 5e-05
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 240 DQDPYFRMTRDVAPRIGYH------KP-ALIESSFFPALQGETG-KMSASDPNSAIYVTD 291
DQ + +TR++A R Y +P A++ P L G G KMS S N I +
Sbjct: 162 DQVYHIELTREIARRFNYLYDEVFPEPEAILSRV--PKLPGTDGRKMSKSYGN-IINLEI 218
Query: 292 SAKAIKNKV 300
S K ++ +
Sbjct: 219 SEKELEQTI 227
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; HET: AZY; 1.80A {Escherichia
coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Length = 322
Score = 42.6 bits (101), Expect = 8e-05
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ D + + +G L G P++++LHLGHLVP + K Q A
Sbjct: 13 RGLVAQVTDEEALAERLAQG-PIALVCGFDPTADSLHLGHLVPLLCLKRFQQA 64
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 42.8 bits (101), Expect = 8e-05
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
L+RG + ++L ++G + G P+ LHLGH V + Q+
Sbjct: 15 LKRGAEEIVPE-EELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQEL 68
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA
synthetase, tyrrs, ligase, tyrosine, RNA-binding,
ATP-binding; 2.9A {Mycobacterium tuberculosis}
Length = 432
Score = 42.2 bits (100), Expect = 1e-04
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ DL+ + ++G +Y G P++ +LH GHLVP + + Q A
Sbjct: 12 RGLIAQSTDLDTLAAEAQRG-PMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRA 63
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase,
protein-substrate complex, ATP-BI ligase, mitochondrion,
nucleotide-binding, protein biosynth; HET: YSA; 2.20A
{Homo sapiens} PDB: 3zxi_A*
Length = 356
Score = 41.9 bits (99), Expect = 1e-04
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
+L ++ D +Y G P++++LH+GHL+ + +LQ A
Sbjct: 33 ELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRA 77
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design,
ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP:
c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Length = 420
Score = 41.4 bits (98), Expect = 2e-04
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ + D I D K + LY G P++++LH+GHL+PF+ + Q+
Sbjct: 12 RGLIYQQTDEQGIEDLLNKE-QVTLYCGADPTADSLHIGHLLPFLTLRRFQEH 63
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E*
1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Length = 419
Score = 41.4 bits (98), Expect = 3e-04
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ D + + + + LY G P++++LH+GHL + + Q A
Sbjct: 10 RGLVNQTTDEDGLRKLLNEE-RVTLYCGFDPTADSLHIGHLATILTMRRFQQA 61
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 39.4 bits (93), Expect = 8e-04
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 240 DQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPNSAIYVT 290
DQ + + RD+A ++ P A + E + G KMS S N I +
Sbjct: 148 DQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGA--KMSKSYQN-TIDIF 204
Query: 291 DSAKAIKNKV 300
S K +K ++
Sbjct: 205 SSEKTLKKQI 214
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 39.1 bits (92), Expect = 0.001
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP--------------ALQGETGKMS 279
+P DQ + + RD+A R ++ E F +LQ T KMS
Sbjct: 146 QVPVGSDQKQHLELARDIATR--FNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMS 203
Query: 280 ASDPN--SAIYVTDSAKAIKNKV 300
SD N + I + + K+I K+
Sbjct: 204 KSDDNRKNVITLLEDPKSIIKKI 226
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 38.7 bits (91), Expect = 0.001
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 271 LQGETGKMSASDPN--SAIYVTDSAKAIKNKV 300
L T KMS S N IY+ D + + K+
Sbjct: 196 LFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKI 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 52/329 (15%), Positives = 101/329 (30%), Gaps = 98/329 (29%)
Query: 20 WEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGR-----PPHVFLRRGVFFAHRDLN 74
V ++ +L ++F ++ L + + P + + F +
Sbjct: 20 LLVPTASFFIASQLQEQF-----NKILPEPTEGFAADDEPTTPAELVGK---FLGY---- 67
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQD----AFKVPLVIQLTDDEK 130
+ E + G + L+L L F YL+ A L L +++
Sbjct: 68 -VSSLVEPSKV-------GQFDQVLNLC-LTEF-ENCYLEGNDIHALAAKL---LQENDT 114
Query: 131 CMWKNLSVEESQRLARENAKDII----------ACGFDVTKTF-IFSDFDYVGG-----A 174
+ K + ++ AR AK A G + IF GG
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF------GGQGNTDD 168
Query: 175 FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF--------PHLFS 226
+++ + + + TY+ +VG + + ++ + A F P
Sbjct: 169 YFEELRDLYQ--TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 227 GKDHLRCLIPCAIDQDP---------YFRMTRDVAPRIGYHKPALIESSFFPALQGETGK 277
KD+L IP + P Y + +G+ P L+G TG
Sbjct: 227 DKDYL-LSIPISC---PLIGVIQLAHYVVTAK----LLGFT-PG----ELRSYLKGATGH 273
Query: 278 ---------MSASDPNSAIYVTDSAKAIK 297
++ +D + + KAI
Sbjct: 274 SQGLVTAVAIAETDSWESFF-VSVRKAIT 301
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 37.9 bits (89), Expect = 0.002
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 271 LQGETGKMSASDPN--SAIYVTDSAKAIKNKV 300
L T KMS SDPN + I + D AK I+ K+
Sbjct: 186 LVDPTKKMSKSDPNPKAYITLLDDAKTIEKKI 217
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 37.9 bits (89), Expect = 0.002
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 271 LQGETGKMSASDPN--SAIYVTDSAKAIKNKV 300
LQ T KMS SD N + I + + K++ K+
Sbjct: 201 LQDPTKKMSKSDDNRNNVIELLEDPKSVVKKI 232
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 38.0 bits (89), Expect = 0.002
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 271 LQGETGKMSASDPN--SAIYVTDSAKAIKNKV 300
L KMS SDPN + I + D K ++ K+
Sbjct: 220 LNDPLKKMSKSDPNQKAYITLLDEPKQLEKKI 251
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.32
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 23/77 (29%)
Query: 1 MDKNEEKQREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHV 60
+D + +E RE+ K ++++ ++ +Q V++ +
Sbjct: 101 LDAASKVMEQEWREKA--------------KKDLEEWNQRQSEQ--VEKNKINNRIADKA 144
Query: 61 FLRRGVFFAHRDLNDIL 77
F D DI+
Sbjct: 145 FY------QQPD-ADII 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.8
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 277 KMSASDPNSAIYVTDSAK--AIKNKV 300
K+ AS +Y DSA AIK +
Sbjct: 24 KLQAS---LKLYADDSAPALAIKATM 46
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport,
complex IV, proton pumps, membrane prote; HET: TPO HEA
CHD PEK PGV DMU; 1.95A {Bos taurus}
Length = 169
Score = 26.9 bits (59), Expect = 7.2
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 120 PLVIQLTDDEKCMWKNLSVEE 140
L + EK W +LS++E
Sbjct: 57 ASQKALKEKEKASWSSLSIDE 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.421
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,718,154
Number of extensions: 291775
Number of successful extensions: 863
Number of sequences better than 10.0: 1
Number of HSP's gapped: 795
Number of HSP's successfully gapped: 46
Length of query: 300
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 207
Effective length of database: 4,105,140
Effective search space: 849763980
Effective search space used: 849763980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.4 bits)