BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022243
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
Length = 262
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 146/270 (54%), Gaps = 27/270 (10%)
Query: 21 DVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKM 79
++ N + AE+L++ A +GA ++++ ELF+ GY F RE+ F A+ + T +
Sbjct: 15 ELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNF--ESREEVFDVAQQIPEGETTTFL 72
Query: 80 QELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPG 139
ELA+ELG+ + E++ N YNS ++ G +G YRK H+ Y+EK +F PG
Sbjct: 73 XELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGY-IGKYRKIHL----FYREKVFFEPG 127
Query: 140 DTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHW 199
D GFKVF FAK+GV IC+D +FPE+AR + L+GAEI+ +P + R
Sbjct: 128 DLGFKVFDIGFAKVGVXICFDWFFPESARTLALKGAEIIAHPANLVXPYAPRAXPIRALE 187
Query: 200 RRVMQGHAGANVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAV 259
RV + ++R+G+E + F G S IA P E+++ A + EE +
Sbjct: 188 NRVYT---------ITADRVGEE--------RGLKFIGKSLIASPKAEVLSIASETEEEI 230
Query: 260 LVAQFDLDKLKSKR--SSWGVFRDRRPELY 287
V + DL+ ++KR +F+DRR E Y
Sbjct: 231 GVVEIDLNLARNKRLNDXNDIFKDRREEYY 260
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 147/267 (55%), Gaps = 29/267 (10%)
Query: 25 NLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83
N + AE+L++ A +GA ++++ ELF+ GY F RE+ F+ A+ + T + ++A
Sbjct: 19 NYSKAEKLIKEASKQGAQLVVLPELFDTGYNF--ETREEVFEIAQKIPEGETTTFLMDVA 76
Query: 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF 143
++ GV + E+ + YNS ++ G +G YRK H+ Y+EKF+F PGD GF
Sbjct: 77 RDTGVYIVAGTAEKDGDVLYNSAVVVGPRGF-IGKYRKIHL----FYREKFFFEPGDLGF 131
Query: 144 KVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVM 203
+VF F K+GV I +D +FPE+AR + L+GA+++ +P + + R M
Sbjct: 132 RVFDLGFMKVGVMIXFDWFFPESARTLALKGADVIAHPANL----------VMPYAPRAM 181
Query: 204 QGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVA 262
A N V V ++R+G+E + F G S IA P E+++ A + EE V VA
Sbjct: 182 PIRALENKVYTVTADRVGEE--------RGLKFIGKSLIASPKAEVLSMASETEEEVGVA 233
Query: 263 QFDLDKLKSKRSS--WGVFRDRRPELY 287
+ DL +++KR + +F+DRR E Y
Sbjct: 234 EIDLSLVRNKRINDLNDIFKDRREEYY 260
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 133/285 (46%), Gaps = 34/285 (11%)
Query: 32 LVRAAHGKGANIILIQEL-----FEGYYFC-QAQREDFFQRAKPYKDHPTILKMQELAKE 85
++ A +GAN I+ EL F ++F +A+ + F++ P P + + E A E
Sbjct: 30 MLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMP---GPVVRPLFEKAAE 86
Query: 86 LGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EK 133
LG+ + + E +N+ ++D G +G YRK H+P Y+ EK
Sbjct: 87 LGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK 146
Query: 134 FYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILF----YPTAIGSEPQ 189
YF PGD GF V+ AK+G+ IC D+ +PEA R M L+GAEI+ PT PQ
Sbjct: 147 RYFEPGDLGFPVYDVDAAKMGMFICNDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQ 206
Query: 190 DDGLDSRDHWRRVMQGHAGANVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIV 249
D L S H + G A+ ++G E G+S I PTGEIV
Sbjct: 207 HDHLTSFHHLLSMQAGSYQNGAWSAAAGKVGME--------ENCMLLGHSCIVAPTGEIV 258
Query: 250 AAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD-RRPELYKVLLTL 293
A E+ V+ A DLD+ + R F+ R+P+ Y ++ L
Sbjct: 259 ALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL 303
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|E Chain E, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|F Chain F, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|G Chain G, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|H Chain H, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
Length = 405
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 142/307 (46%), Gaps = 33/307 (10%)
Query: 5 KRREVVVSALQFACTDDVSTNLAT--------AERLVRAAHGKGANIILIQELFE-GYYF 55
KRR V V A+Q + + + + +++AA G NI+ QE + + F
Sbjct: 69 KRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF 128
Query: 56 CQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE---EANNAHYNSIAIIDAD 112
C ++ + + A+ ++ PT + ELAK +V+ S E E +N+ +I
Sbjct: 129 CTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNS 188
Query: 113 GSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVL 172
G LG +RK+HIP + E Y+ G+TG VF+T+F K+ V IC+ + P+ L
Sbjct: 189 GRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGL 248
Query: 173 QGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN----VPLVASNRIGKEIIETEH 228
GAEI+F P+A G S W + A AN VP+ NR+G E E+
Sbjct: 249 NGAEIVFNPSAT------IGRLSEPLWSIEARNAAIANSYFTVPI---NRVGTEQFPNEY 299
Query: 229 G--------KSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFR 280
K FYG+S++A P G + ++ +LV + DL+ + + WG
Sbjct: 300 TSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRM 359
Query: 281 DRRPELY 287
+R LY
Sbjct: 360 TQRVPLY 366
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 141/313 (45%), Gaps = 49/313 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
+ + + RE VV L D+ TN A+ +G N I+ EL F ++F
Sbjct: 15 IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56 C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
+A+ + F++ P P + + E A ELG+ + + E +N+ ++D
Sbjct: 60 TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGVAICWDQW 162
G +G YRK H+P Y+ EK YF PGD GF V+ AK+G+ IC D+
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRR 176
Query: 163 FPEAARAMVLQGAEILF----YPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVPLVASNR 218
+PE R M L+GAEI+ PT PQ D L S H + G A+ +
Sbjct: 177 WPETWRVMGLKGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGK 236
Query: 219 IGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGV 278
+G E G+S I PTGEIVA E+ V+ A DLD+ + R
Sbjct: 237 VGME--------EGCMLLGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREHIFN 288
Query: 279 FR-DRRPELYKVL 290
F+ R+P+ Y ++
Sbjct: 289 FKAHRQPQHYGLI 301
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 141/313 (45%), Gaps = 49/313 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
+ + + RE VV L D+ TN A+ +G N I+ EL F ++F
Sbjct: 15 IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56 C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
+A+ + F++ P P + + E A ELG+ + + E +N+ ++D
Sbjct: 60 TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGVAICWDQW 162
G +G YRK H+P Y+ EK YF PGD GF V+ AK+G+ IC D+
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRR 176
Query: 163 FPEAARAMVLQGAEILF----YPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVPLVASNR 218
+PE R M L+GAEI+ PT PQ D L S H + G A+ +
Sbjct: 177 WPETWRVMGLKGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGK 236
Query: 219 IGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGV 278
+G E G+S I PTGEIVA E+ V+ A DLD+ + R
Sbjct: 237 VGME--------EGCMLLGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREHIFN 288
Query: 279 FR-DRRPELYKVL 290
F+ R+P+ Y ++
Sbjct: 289 FKAHRQPQHYGLI 301
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 141/313 (45%), Gaps = 49/313 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
+ + + RE VV L D+ TN A+ +G N I+ EL F ++F
Sbjct: 15 IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56 C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
+A+ + F++ P P + + E A ELG+ + + E +N+ ++D
Sbjct: 60 TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGVAICWDQW 162
G +G YRK H+P Y+ EK YF PGD GF V+ AK+G+ IC D+
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRR 176
Query: 163 FPEAARAMVLQGAEILF----YPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVPLVASNR 218
+PE R M L+GAEI+ PT PQ D L S H + G A+ +
Sbjct: 177 WPETWRVMGLKGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQCGSYQNGAWSAAAGK 236
Query: 219 IGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGV 278
+G E G+S I PTGEIVA E+ V+ A DLD+ + R
Sbjct: 237 VGME--------EGCMLLGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREHIFN 288
Query: 279 FR-DRRPELYKVL 290
F+ R+P+ Y ++
Sbjct: 289 FKAHRQPQHYGLI 301
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 131/285 (45%), Gaps = 34/285 (11%)
Query: 32 LVRAAHGKGANIILIQEL-----FEGYYFC-QAQREDFFQRAKPYKDHPTILKMQELAKE 85
++ A +GAN I+ EL F ++F +A+ + F++ P P + + E A E
Sbjct: 30 MLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMP---GPVVRPLFEKAAE 86
Query: 86 LGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EK 133
LG+ + + E +N+ ++D G +G YRK H+P Y+ EK
Sbjct: 87 LGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK 146
Query: 134 FYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILF----YPTAIGSEPQ 189
YF PGD GF V+ AK+G+ I D+ +PEA R M L+GAEI+ PT PQ
Sbjct: 147 RYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQ 206
Query: 190 DDGLDSRDHWRRVMQGHAGANVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIV 249
D L S H + G A+ + G E G+S I PTGEIV
Sbjct: 207 HDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGME--------ENCMLLGHSCIVAPTGEIV 258
Query: 250 AAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD-RRPELYKVLLTL 293
A E+ V+ A DLD+ + R F+ R+P+ Y ++ L
Sbjct: 259 ALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL 303
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 131/285 (45%), Gaps = 25/285 (8%)
Query: 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
++ +Q + S NL A LVR A +GANI+ + E F Y +F
Sbjct: 6 LALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPY-----GTTYFPDYAEK 60
Query: 71 KDHPTILKMQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDG 127
+ K+ E+AKE + ++ S EE YN+ ++ DGS L +RK H+ D
Sbjct: 61 IPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDV 120
Query: 128 PG---YQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAI 184
PG +QE +PGD+ F F T + K+G+ IC+D F E A+ +G ++L YP A
Sbjct: 121 PGKITFQESKTLSPGDS-FSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAF 179
Query: 185 GSEPQDDGLDSRDHWRRVMQGHAGANVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 244
+ HW + + A N VA+ ++ K+ +G+S + P
Sbjct: 180 ------NLTTGPAHWELLQRARAVDNQVYVATASPARD------DKASYVAWGHSTVVDP 227
Query: 245 TGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKV 289
G+++ A EE +L + DL KL R + + +R +LY V
Sbjct: 228 WGQVLTKA-GTEETILYSDIDLKKLAEIRQQIPILKQKRADLYTV 271
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
pdb|1F89|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
Length = 291
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 133/292 (45%), Gaps = 26/292 (8%)
Query: 7 REVVVSALQFA-CTDDVSTNLATAERLVRAAHGKGAN--IILIQELFEGYYFCQAQREDF 63
+++ V+ +Q + + D NL A + A + + ++++ E F Y R+ +
Sbjct: 9 QKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRK-Y 67
Query: 64 FQRAKPYKDHPTILKMQELAKELGVVM---PVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
+ P + ++ + LA + +++ + + + YN+ I + DG + +R
Sbjct: 68 SEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHR 127
Query: 121 KSH-----IPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGA 175
K H IP+G + E +PG+ + TK+ K GV IC+D FPE A +GA
Sbjct: 128 KVHLFDVDIPNGISFHESETLSPGEKSTTI-DTKYGKFGVGICYDMRFPELAMLSARKGA 186
Query: 176 EILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVPLVASNRIGKEIIETEHGKSQITF 235
+ YP+A + + HW + + A N V + + + H
Sbjct: 187 FAMIYPSAFNT------VTGPLHWHLLARSRAVDNQVYVMLCSPARNLQSSYHA------ 234
Query: 236 YGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELY 287
YG+S + P G+IVA A + EE ++ A+ D + ++S R + + + RR ++Y
Sbjct: 235 YGHSIVVDPRGKIVAEAGEGEE-IIYAELDPEVIESFRQAVPLTKQRRFDVY 285
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 28/289 (9%)
Query: 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
++ Q +D+ N A+ ++ A K ++ + E F+ + ++ D
Sbjct: 17 IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMAT--- 73
Query: 71 KDHPTILKMQELAKELGVVMPVSFFEE---ANNAH-YNSIAIIDADGSDLGLYRKSH--- 123
D + K +ELA++ + + + ++ AH +N+ IID+DG Y K H
Sbjct: 74 -DCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFD 132
Query: 124 --IPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYP 181
IP E + G T ++G++IC+D FPE + +GA++L +P
Sbjct: 133 LEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFP 192
Query: 182 TAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSF 240
+A + GL HW +++ A N +VA+ + G + K Q YG+S
Sbjct: 193 SAFT---LNTGL---AHWETLLRARAIENQCYVVAAAQTG-----AHNPKRQ--SYGHSM 239
Query: 241 IAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKV 289
+ P G +VA ++ + A+ DL + + R VF RR +LY +
Sbjct: 240 VVDPWGAVVAQCSERVDMCF-AEIDLSYVDTLREMQPVFSHRRSDLYTL 287
>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From
Nesterenkonia Sp
Length = 283
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 111/272 (40%), Gaps = 29/272 (10%)
Query: 21 DVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKM 79
D NL + A +GA ++L ELF GY Q + ++ + ++
Sbjct: 34 DPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARS-----RL 88
Query: 80 QELAKELGVVMPVSF-FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNP 138
+ +A++ G+ + S E + + D G L Y+K + G +EK F P
Sbjct: 89 RGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLY---GPEEKAAFVP 145
Query: 139 GDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAI-GSEPQDDGLDSRD 197
G+ V ++ + +C+D FPE RA +GA+++ PTA+ G E G+
Sbjct: 146 GEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVPGI---- 201
Query: 198 HWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKE 256
++ A N + L +N G E + F G S + GP G+ + E
Sbjct: 202 ----LLPARAVENGITLAYANHCGPE--------GGLVFDGGSVVVGPAGQPLGEL-GVE 248
Query: 257 EAVLVAQFDLDKLKSKRSSWGVFRDRRPELYK 288
+LV + S +DRR EL++
Sbjct: 249 PGLLVVDLPDQSQDAGSDSADYLQDRRAELHR 280
>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
pdb|4F4H|B Chain B, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
Length = 565
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 103 YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQW 162
YN+ ++I G G YRK +P+ + EK YF D VF+ K GV IC D W
Sbjct: 116 YNAASLI-VGGEVAGTYRKQDLPNTEVFDEKRYFAT-DAAPYVFELNGVKFGVVICEDVW 173
Query: 163 FPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVPLVASNRIGKE 222
AA+ GA++L P D + R+ + +P+V N +G
Sbjct: 174 HASAAQLAKAAGAQVLIVPNGSPYHMNKDAVRIDILRARIRE----TGLPMVYVNLVG-- 227
Query: 223 IIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFD 265
G+ ++ F G SF+ GE+VA EE + +FD
Sbjct: 228 ------GQDELVFDGGSFVLDGAGELVAKMPQFEEGNAIVEFD 264
>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
pdb|3P8K|B Chain B, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
Length = 281
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 90/193 (46%), Gaps = 22/193 (11%)
Query: 99 NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQ-TKFAKIGVAI 157
NN +N+ ++ G + Y K H+ P +E + G+ + FQ + + I
Sbjct: 108 NNQIFNTAFSVNKSGQLINEYDKVHLV--PXLREHEFLTAGEYVAEPFQLSDGTYVTQLI 165
Query: 158 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSR-DHWRRVMQGHA-GANVPLVA 215
C+D FPE R GA+I FY + P SR HW +++ A N ++
Sbjct: 166 CYDLRFPELLRYPARSGAKIAFY---VAQWPX-----SRLQHWHSLLKARAIENNXFVIG 217
Query: 216 SNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSS 275
+N G + G ++ + G+S + P G++V ++ + +L +L++++ +R +
Sbjct: 218 TNSTGFD------GNTE--YAGHSIVINPNGDLVGELNESAD-ILTVDLNLNEVEQQREN 268
Query: 276 WGVFRDRRPELYK 288
VF+ + +LYK
Sbjct: 269 IPVFKSIKLDLYK 281
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYU|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYV|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2DYV|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 105/265 (39%), Gaps = 33/265 (12%)
Query: 10 VVSALQFACT-----DDVSTNLATAERLVRAAHG--KGANIILIQEL-FEGYYFCQAQRE 61
+V+A+QF D+ N+ + R + A G +I+ E +G + E
Sbjct: 15 LVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSE 74
Query: 62 DFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRK 121
+F P K+ K + AK GV + ++N YN+ IID G + YRK
Sbjct: 75 EFLLDV-PGKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRK 133
Query: 122 SHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGVAICWDQWFPEAARAMVLQGAEILFY 180
P P E +Y PGD G V + +K+ V IC D PE AR +G +
Sbjct: 134 L-FPWNP--IEPWY--PGDLGMPVCEGPGGSKLAVCICHDGMIPELAREAAYKGCNVYIR 188
Query: 181 PTAIGSEPQDDGL--DSRDHWRRVMQGHAGANVPLVASNRIGKEIIETEHGKSQI-TFYG 237
+ ++ D + + + W +M V+ N G + + G+ QI F G
Sbjct: 189 ISGYSTQVNDQWILTNRSNAWHNLMY--------TVSVNLAGYDNVFYYFGEGQICNFDG 240
Query: 238 NSFIAGP-------TGEIVAAADDK 255
+ + G TGEI D
Sbjct: 241 TTLVQGHRNPWEIVTGEIYPKMADN 265
>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
pdb|3N05|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
Length = 590
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 104/263 (39%), Gaps = 37/263 (14%)
Query: 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ--AQREDFFQRAKPYKDHPTILK 78
D++ N R R + +GA+++ E+ Y + A R F + ++
Sbjct: 18 DIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARL 77
Query: 79 MQELAKELGVVMPVSFFEEANNAH----------YNSIAIIDADGSDLGLYRKSHIPDGP 128
+E EL V+ V + + + +A N+ A++ L + K H+P+
Sbjct: 78 AEEGFGELPVL--VGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVAL-TFAKHHLPNYG 134
Query: 129 GYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQW-----FPEAARAMVLQGAEILFYPTA 183
+ E YF PGDT + + I +AIC D W P A A GA +L A
Sbjct: 135 VFDEFRYFVPGDT-MPIVRLHGVDIALAICEDLWQDGGRVPAARSA----GAGLLLSVNA 189
Query: 184 IGSEPQDDGLDSRDHWRRVMQGHAGANVPLVASNRIGKEIIETEHGKSQITFYGNSFIAG 243
E D D+R R AG +A IG G+ ++ F G+S +
Sbjct: 190 SPYERDKD--DTRLELVRKRAQEAGCTTAYLAM--IG--------GQDELVFDGDSIVVD 237
Query: 244 PTGEIVAAADDKEEAVLVAQFDL 266
GE+VA A E +V DL
Sbjct: 238 RDGEVVARAPQFSEGCVVLDLDL 260
>pdb|2PLQ|A Chain A, Crystal Structure Of The Amidase From Geobacillus Pallidus
Rapc8
Length = 348
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 99 NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 158
N A YN++ +I+ G + YRK IP P E +Y PGDT + K KI + +C
Sbjct: 112 NKAPYNTLVLINNKGEIVQKYRKI-IPWCP--IEGWY--PGDTTYVTEGPKGLKISLIVC 166
Query: 159 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVPLVA-SN 217
D +PE R ++GAE++ Q +++ + + A AN VA +N
Sbjct: 167 DDGNYPEIWRDCAMKGAELIV-------RCQGYMYPAKEQQIMMAKAMAWANNTYVAVAN 219
Query: 218 RIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSS 275
G + + +++G+S I G G + +E + A+ + +++ R +
Sbjct: 220 ATGFDGV--------YSYFGHSAIIGFDGRTLGECGTEENGIQYAEVSISQIRDFRKN 269
>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 104/268 (38%), Gaps = 39/268 (14%)
Query: 10 VVSALQFACT-----DDVSTNLATAERLVRAAHGKGAN------IILIQELFEGYYFCQA 58
+V+A+QF D+ N+ E ++R H A II + +G +
Sbjct: 15 LVAAIQFPVPIVNSRKDIDHNI---ESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKW 71
Query: 59 QREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 118
E+F P K+ K + AK GV + ++N YN+ IID G +
Sbjct: 72 LSEEFLLDV-PGKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILK 130
Query: 119 YRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGVAICWDQWFPEAARAMVLQGAEI 177
YRK P P E +Y PGD G V + +K+ V I D PE AR +G +
Sbjct: 131 YRKL-FPWNP--IEPWY--PGDLGMPVCEGPGGSKLAVCISHDGMIPELAREAAYKGCNV 185
Query: 178 LFYPTAIGSEPQDDGL--DSRDHWRRVMQGHAGANVPLVASNRIGKEIIETEHGKSQI-T 234
+ ++ D + + + W +M V+ N G + + G+ QI
Sbjct: 186 YIRISGYSTQVNDQWILTNRSNAWHNLMY--------TVSVNLAGYDNVFYYFGEGQICN 237
Query: 235 FYGNSFIAGP-------TGEIVAAADDK 255
F G + + G TGEI D
Sbjct: 238 FDGTTLVQGHRNPWEIVTGEIYPKMADN 265
>pdb|2UXY|A Chain A, Aliphatic Amidase
Length = 341
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 21/181 (11%)
Query: 96 EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
E A YN++ +ID +G + YRK IP P E +Y PG + K KI +
Sbjct: 109 EHPRKAPYNTLVLIDNNGEIVQKYRKI-IPWCP--IEGWY--PGGQTYVSEGPKGMKISL 163
Query: 156 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVPLVA 215
I D +PE R ++GAE++ Q ++D + + A AN VA
Sbjct: 164 IIXDDGNYPEIWRDCAMKGAELIV-------RCQGYMYPAKDQQVMMAKAMAWANNCYVA 216
Query: 216 -SNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRS 274
+N G + + +++G+S I G G + ++E + AQ L +++ R+
Sbjct: 217 VANAAGFDGV--------YSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSLSQIRDARA 268
Query: 275 S 275
+
Sbjct: 269 N 269
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 112/298 (37%), Gaps = 51/298 (17%)
Query: 17 ACTD-----DVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAKPY 70
ACT D + N A+ + RA H GA + + EL GY +D A
Sbjct: 17 ACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAV-- 74
Query: 71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY 130
+L + + +L V+ V + YN+ +I G+ LG+ KS++P +
Sbjct: 75 --EDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIH-RGAVLGVVPKSYLPTYREF 131
Query: 131 QEKFYFNPGDTGFKVFQTKFAKIG------------------VAICWDQWFP-----EAA 167
E+ PGD + A + V IC D + P EAA
Sbjct: 132 YERRQMAPGDGERGTIRIGGADVAFGTDLLFAASDLPGFVLHVEICEDMFVPMPPSAEAA 191
Query: 168 RAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVPLVASNRIGKEIIETE 227
A A + P IG +D L +R R + + + A+ G+
Sbjct: 192 LAGATVLANLSGSPITIG-RAEDRRLLARSASARCLAAY------VYAAAGEGES----- 239
Query: 228 HGKSQITFYGNSFIAGPTGEIVAAADDKEEAVL--VAQFDLDKLKSKRSSWGVFRDRR 283
+ + + G + I G ++A ++ + V VA D + L+S+R G F D R
Sbjct: 240 --TTDLAWDGQTMI-WENGALLAESERFPKGVRRSVADVDTELLRSERLRMGTFDDNR 294
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
Query: 17 ACTD-----DVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAKPY 70
ACT D + N A+ + RA H GA + + EL GY +D A
Sbjct: 17 ACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAV-- 74
Query: 71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY 130
+L + + +L V+ V + YN+ +I G+ LG+ KS++P +
Sbjct: 75 --EDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIH-RGAVLGVVPKSYLPTYREF 131
Query: 131 QEKFYFNPGD 140
E+ PGD
Sbjct: 132 YERRQMAPGD 141
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDH-PTILKMQELAKELGV 88
AA G+ ++ L+Q+ E YY + + F +R KD P + K++E+ K LG+
Sbjct: 6 AARGEDTSMNLVQKYLENYYDLKKDVKQFVRR----KDSGPVVKKIREMQKFLGL 56
>pdb|2ETS|A Chain A, Crystal Structure Of A Bacterial Domain Of Unknown
Function From Duf1798 Family (Mw1337) From
Staphylococcus Aureus Subsp. Aureus At 2.25 A
Resolution
Length = 128
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 57 QAQREDFFQRAKPYKDH-PTILKMQELAKELGVVMP 91
Q Q DF+Q KPY +H +IL +L +E + +P
Sbjct: 37 QQQDHDFYQTVKPYTEHIDSILNEIKLHREFIIEVP 72
>pdb|3O76|A Chain A, 1.8 Angstroms Molecular Structure Of Mouse Liver
Glutathione S- Transferase Mutant C47a Complexed With
S-(P-Nitrobenzyl)glutathione
pdb|3O76|B Chain B, 1.8 Angstroms Molecular Structure Of Mouse Liver
Glutathione S- Transferase Mutant C47a Complexed With
S-(P-Nitrobenzyl)glutathione
Length = 209
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 56 CQAQREDFFQRAKPYKDHPTILK--MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADG 113
C+A R + + +K+ + MQ L K + + FE+ + Y S AI+ G
Sbjct: 14 CEAMRMLLADQGQSWKEEVVTIDTWMQGLLKPTALYGQLPKFEDGDLTLYQSNAILRHLG 73
Query: 114 SDLGLYRKSH 123
LGLY K+
Sbjct: 74 RSLGLYGKNQ 83
>pdb|1GTI|A Chain A, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|B Chain B, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|C Chain C, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|D Chain D, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|E Chain E, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|F Chain F, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
Length = 209
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 56 CQAQREDFFQRAKPYKDHPTILK--MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADG 113
C+A R + + +K+ + MQ L K + + FE+ + Y S AI+ G
Sbjct: 14 CEAMRMLLADQGQSWKEEVVTIDTWMQGLLKPTXLYGQLPKFEDGDLTLYQSNAILRHLG 73
Query: 114 SDLGLYRKSH 123
LGLY K+
Sbjct: 74 RSLGLYGKNQ 83
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAER-----LVRAAHGKGANIILIQELFEGY-- 53
+++GKR V C DV L AER +++A+ G G I E E +
Sbjct: 212 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPI 271
Query: 54 YFCQAQRE-----DFFQRAKPYKDHPTILKMQELAKELG 87
F Q Q E F + + H L++Q LA + G
Sbjct: 272 LFRQVQSEIPGSPIFLMKLAQHARH---LEVQILADQYG 307
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAER-----LVRAAHGKGANIILIQELFEGY-- 53
+++GKR V C DV L AER +++A+ G G I E E +
Sbjct: 196 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPI 255
Query: 54 YFCQAQRE-----DFFQRAKPYKDHPTILKMQELAKELG 87
F Q Q E F + + H L++Q LA + G
Sbjct: 256 LFRQVQSEIPGSPIFLMKLAQHARH---LEVQILADQYG 291
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAER-----LVRAAHGKGANIILIQELFEGY-- 53
+++GKR V C DV L AER +++A+ G G I E E +
Sbjct: 206 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPI 265
Query: 54 YFCQAQRE-----DFFQRAKPYKDHPTILKMQELAKELG 87
F Q Q E F + + H L++Q LA + G
Sbjct: 266 LFRQVQSEIPGSPIFLMKLAQHARH---LEVQILADQYG 301
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAER-----LVRAAHGKGANIILIQELFEGY-- 53
+++GKR V C DV L AER +++A+ G G I E E +
Sbjct: 212 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPI 271
Query: 54 YFCQAQRE-----DFFQRAKPYKDHPTILKMQELAKELG 87
F Q Q E F + + H L++Q LA + G
Sbjct: 272 LFRQVQSEIPGSPIFLMKLAQHARH---LEVQILADQYG 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,580,111
Number of Sequences: 62578
Number of extensions: 417575
Number of successful extensions: 972
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 35
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)