Query 022243
Match_columns 300
No_of_seqs 126 out of 1232
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02747 N-carbamolyputrescine 100.0 2.7E-54 5.8E-59 383.0 32.4 293 4-296 2-295 (296)
2 TIGR03381 agmatine_aguB N-carb 100.0 1.3E-54 2.9E-59 382.1 29.3 277 9-289 1-278 (279)
3 cd07587 ML_beta-AS mammalian-l 100.0 1.9E-52 4.1E-57 377.8 30.9 281 6-292 61-362 (363)
4 cd07568 ML_beta-AS_like mammal 100.0 1.3E-51 2.8E-56 364.5 29.7 274 7-291 2-285 (287)
5 cd07573 CPA N-carbamoylputresc 100.0 4.6E-51 9.9E-56 360.5 30.1 279 9-291 1-283 (284)
6 PLN00202 beta-ureidopropionase 100.0 8.5E-51 1.8E-55 370.6 31.3 281 6-293 84-384 (405)
7 PLN02504 nitrilase 100.0 5.9E-50 1.3E-54 360.0 28.5 275 7-296 23-328 (346)
8 PRK10438 C-N hydrolase family 100.0 1.8E-49 3.8E-54 344.7 28.0 251 8-287 3-255 (256)
9 cd07564 nitrilases_CHs Nitrila 100.0 1.7E-49 3.7E-54 352.1 27.7 275 9-292 1-296 (297)
10 cd07583 nitrilase_5 Uncharacte 100.0 1.3E-48 2.7E-53 339.4 27.1 250 10-283 1-253 (253)
11 cd07569 DCase N-carbamyl-D-ami 100.0 2.1E-48 4.5E-53 346.0 28.8 277 7-291 2-301 (302)
12 cd07576 R-amidase_like Pseudom 100.0 1.1E-48 2.3E-53 340.0 26.0 252 10-285 1-254 (254)
13 cd07580 nitrilase_2 Uncharacte 100.0 2.1E-48 4.5E-53 340.7 26.6 263 10-287 1-268 (268)
14 PLN02798 nitrilase 100.0 6.3E-48 1.4E-52 340.4 28.9 267 2-287 4-282 (286)
15 cd07584 nitrilase_6 Uncharacte 100.0 4.4E-48 9.5E-53 336.9 27.4 253 10-283 1-257 (258)
16 cd07586 nitrilase_8 Uncharacte 100.0 1.8E-47 3.9E-52 335.0 26.5 263 10-288 1-266 (269)
17 cd07579 nitrilase_1_R2 Second 100.0 1.3E-47 2.9E-52 336.5 25.5 251 10-288 1-269 (279)
18 cd07585 nitrilase_7 Uncharacte 100.0 2.6E-47 5.7E-52 332.6 27.3 257 10-287 1-261 (261)
19 cd07572 nit Nit1, Nit 2, and r 100.0 4.7E-47 1E-51 331.6 27.2 256 10-283 1-265 (265)
20 cd07565 aliphatic_amidase alip 100.0 1.9E-46 4E-51 331.0 29.0 257 9-292 1-269 (291)
21 cd07577 Ph0642_like Pyrococcus 100.0 5.2E-47 1.1E-51 330.3 24.8 255 10-287 1-259 (259)
22 cd07581 nitrilase_3 Uncharacte 100.0 1.8E-46 4E-51 326.1 27.6 252 11-283 1-255 (255)
23 cd07575 Xc-1258_like Xanthomon 100.0 4.4E-46 9.6E-51 323.1 27.0 248 9-284 1-250 (252)
24 COG0388 Predicted amidohydrola 100.0 6.5E-46 1.4E-50 325.9 28.1 263 8-287 2-267 (274)
25 cd07570 GAT_Gln-NAD-synth Glut 100.0 1.7E-46 3.7E-51 327.4 22.0 255 10-286 1-260 (261)
26 cd07578 nitrilase_1_R1 First n 100.0 1.1E-45 2.4E-50 321.7 26.0 253 9-286 1-258 (258)
27 cd07574 nitrilase_Rim1_like Un 100.0 7.2E-45 1.6E-49 320.3 24.9 263 9-286 1-280 (280)
28 cd07582 nitrilase_4 Uncharacte 100.0 5.4E-44 1.2E-48 316.6 27.5 258 10-278 2-285 (294)
29 cd07567 biotinidase_like bioti 100.0 1.1E-44 2.5E-49 318.7 23.0 240 10-271 2-280 (299)
30 cd07197 nitrilase Nitrilase su 100.0 8.8E-44 1.9E-48 308.7 27.9 250 11-282 1-252 (253)
31 KOG0807 Carbon-nitrogen hydrol 100.0 4E-45 8.7E-50 296.8 17.8 264 9-290 16-291 (295)
32 PRK13286 amiE acylamide amidoh 100.0 9.9E-44 2.2E-48 318.4 28.0 253 5-281 9-275 (345)
33 PRK13287 amiF formamidase; Pro 100.0 1.1E-43 2.3E-48 317.8 27.4 250 6-278 11-271 (333)
34 PRK13981 NAD synthetase; Provi 100.0 3.7E-42 8E-47 327.8 25.9 237 9-268 1-243 (540)
35 PRK02628 nadE NAD synthetase; 100.0 6.3E-42 1.4E-46 332.0 26.7 258 7-283 11-295 (679)
36 cd07571 ALP_N-acyl_transferase 100.0 1.3E-41 2.8E-46 297.6 22.3 237 9-283 1-263 (270)
37 PLN02339 NAD+ synthase (glutam 100.0 9E-41 2E-45 323.2 24.8 258 8-282 3-290 (700)
38 KOG0806 Carbon-nitrogen hydrol 100.0 5.5E-39 1.2E-43 273.5 18.2 272 6-292 11-296 (298)
39 cd07566 ScNTA1_like Saccharomy 100.0 8.9E-38 1.9E-42 275.4 22.0 225 10-243 1-265 (295)
40 KOG0805 Carbon-nitrogen hydrol 100.0 5.6E-36 1.2E-40 244.3 20.6 278 6-298 15-323 (337)
41 PRK00302 lnt apolipoprotein N- 100.0 3.5E-35 7.7E-40 278.1 20.1 223 7-267 218-470 (505)
42 TIGR00546 lnt apolipoprotein N 100.0 1.7E-34 3.6E-39 265.4 19.4 205 6-248 157-391 (391)
43 PF00795 CN_hydrolase: Carbon- 100.0 1.2E-33 2.7E-38 234.0 16.1 173 10-183 1-186 (186)
44 KOG0808 Carbon-nitrogen hydrol 100.0 1.9E-29 4.1E-34 207.7 21.3 279 8-292 73-372 (387)
45 PRK12291 apolipoprotein N-acyl 100.0 1.6E-29 3.5E-34 232.4 19.7 193 9-247 195-414 (418)
46 COG0815 Lnt Apolipoprotein N-a 100.0 3E-27 6.5E-32 221.4 20.8 226 5-268 224-482 (518)
47 KOG2303 Predicted NAD synthase 99.9 1.7E-25 3.6E-30 199.1 8.2 255 5-276 1-285 (706)
48 PRK13825 conjugal transfer pro 99.9 3.3E-23 7.2E-28 188.1 18.2 184 9-218 186-387 (388)
49 cd07565 aliphatic_amidase alip 80.5 13 0.00028 32.8 8.9 67 34-117 163-231 (291)
50 cd07576 R-amidase_like Pseudom 76.0 19 0.00041 30.7 8.5 66 35-117 153-220 (254)
51 cd07584 nitrilase_6 Uncharacte 73.4 24 0.00052 30.2 8.4 69 32-117 154-224 (258)
52 cd07585 nitrilase_7 Uncharacte 70.8 28 0.0006 29.9 8.2 73 33-118 149-223 (261)
53 cd07586 nitrilase_8 Uncharacte 69.2 23 0.0005 30.5 7.4 72 36-117 155-228 (269)
54 cd07572 nit Nit1, Nit 2, and r 68.8 20 0.00044 30.7 7.0 69 32-116 161-232 (265)
55 cd07567 biotinidase_like bioti 68.4 25 0.00054 31.2 7.5 68 35-119 191-260 (299)
56 PRK13286 amiE acylamide amidoh 66.9 41 0.0009 30.5 8.7 70 32-118 174-245 (345)
57 cd07580 nitrilase_2 Uncharacte 66.7 44 0.00096 28.8 8.7 73 34-117 154-228 (268)
58 cd07573 CPA N-carbamoylputresc 65.9 42 0.00091 29.1 8.5 77 33-117 160-242 (284)
59 cd07583 nitrilase_5 Uncharacte 65.8 31 0.00066 29.4 7.4 69 32-117 151-221 (253)
60 cd07570 GAT_Gln-NAD-synth Glut 64.6 32 0.0007 29.4 7.4 67 36-117 158-226 (261)
61 PRK15018 1-acyl-sn-glycerol-3- 64.3 28 0.00061 29.9 6.8 57 20-91 119-175 (245)
62 cd07568 ML_beta-AS_like mammal 63.3 47 0.001 28.9 8.3 69 33-117 171-244 (287)
63 TIGR00542 hxl6Piso_put hexulos 63.0 34 0.00073 29.8 7.3 63 23-93 90-152 (279)
64 cd07581 nitrilase_3 Uncharacte 62.5 47 0.001 28.3 8.0 68 33-117 156-223 (255)
65 cd07197 nitrilase Nitrilase su 62.2 45 0.00098 28.1 7.8 67 34-117 153-221 (253)
66 cd07587 ML_beta-AS mammalian-l 61.0 43 0.00094 30.6 7.8 64 37-116 238-319 (363)
67 TIGR00530 AGP_acyltrn 1-acyl-s 60.2 37 0.00079 25.2 6.2 49 28-91 77-125 (130)
68 cd07577 Ph0642_like Pyrococcus 58.7 59 0.0013 27.8 8.0 64 34-117 151-220 (259)
69 PLN02504 nitrilase 58.3 50 0.0011 30.0 7.7 63 34-116 196-280 (346)
70 PF09587 PGA_cap: Bacterial ca 58.3 95 0.0021 26.5 9.1 74 143-221 121-227 (250)
71 PRK13210 putative L-xylulose 5 58.2 48 0.001 28.7 7.4 62 23-92 90-151 (284)
72 TIGR03381 agmatine_aguB N-carb 58.0 73 0.0016 27.5 8.5 74 34-117 160-239 (279)
73 smart00481 POLIIIAc DNA polyme 57.0 51 0.0011 21.6 5.8 46 28-94 16-61 (67)
74 cd07582 nitrilase_4 Uncharacte 56.5 79 0.0017 27.7 8.5 69 33-117 182-256 (294)
75 COG0388 Predicted amidohydrola 56.4 65 0.0014 27.8 7.9 65 37-117 163-230 (274)
76 PLN02798 nitrilase 55.2 63 0.0014 28.2 7.7 69 33-117 172-244 (286)
77 PRK09856 fructoselysine 3-epim 55.1 52 0.0011 28.4 7.1 63 22-92 85-147 (275)
78 PF01261 AP_endonuc_2: Xylose 54.9 47 0.001 26.9 6.5 65 23-93 67-131 (213)
79 smart00563 PlsC Phosphate acyl 52.4 42 0.0009 24.2 5.3 28 24-52 60-87 (118)
80 PRK13981 NAD synthetase; Provi 52.2 70 0.0015 31.0 8.0 70 34-118 155-226 (540)
81 cd07564 nitrilases_CHs Nitrila 51.4 77 0.0017 27.8 7.6 72 32-117 165-253 (297)
82 cd07579 nitrilase_1_R2 Second 50.8 71 0.0015 27.9 7.2 40 77-116 191-230 (279)
83 PLN02747 N-carbamolyputrescine 50.1 1.1E+02 0.0024 26.7 8.5 75 33-118 165-250 (296)
84 PRK13209 L-xylulose 5-phosphat 47.9 80 0.0017 27.4 7.1 62 23-92 95-156 (283)
85 PF01553 Acyltransferase: Acyl 47.5 55 0.0012 24.3 5.4 49 28-91 79-127 (132)
86 PRK10438 C-N hydrolase family 46.6 83 0.0018 27.0 6.9 63 39-118 154-219 (256)
87 cd03012 TlpA_like_DipZ_like Tl 45.9 1.1E+02 0.0025 22.6 6.9 77 23-118 39-121 (126)
88 cd01821 Rhamnogalacturan_acety 45.7 89 0.0019 25.3 6.7 63 21-91 88-150 (198)
89 PLN00202 beta-ureidopropionase 45.4 1.1E+02 0.0023 28.5 7.8 64 37-116 259-340 (405)
90 KOG2792 Putative cytochrome C 44.6 37 0.0008 29.4 4.1 49 75-123 211-262 (280)
91 PF02630 SCO1-SenC: SCO1/SenC; 44.4 41 0.0009 27.1 4.4 45 76-120 124-172 (174)
92 PF08821 CGGC: CGGC domain; I 43.3 93 0.002 23.0 5.7 54 27-94 52-106 (107)
93 cd00019 AP2Ec AP endonuclease 43.0 76 0.0017 27.5 6.2 62 22-92 80-141 (279)
94 PRK13287 amiF formamidase; Pro 42.1 1.8E+02 0.0039 26.2 8.5 70 32-118 173-244 (333)
95 cd07578 nitrilase_1_R1 First n 41.3 1.4E+02 0.003 25.4 7.5 65 34-117 156-222 (258)
96 COG1135 AbcC ABC-type metal io 40.4 27 0.00058 31.2 2.8 73 32-119 151-224 (339)
97 cd07990 LPLAT_LCLAT1-like Lyso 40.2 79 0.0017 25.7 5.6 28 23-50 85-114 (193)
98 cd01832 SGNH_hydrolase_like_1 40.0 1.4E+02 0.0031 23.6 7.0 64 21-91 86-149 (185)
99 PRK12677 xylose isomerase; Pro 38.0 2.3E+02 0.005 26.2 8.7 26 23-48 110-136 (384)
100 COG1225 Bcp Peroxiredoxin [Pos 37.8 52 0.0011 26.2 3.8 22 102-123 119-140 (157)
101 PF00795 CN_hydrolase: Carbon- 37.3 76 0.0016 25.3 5.0 73 166-249 26-113 (186)
102 cd07988 LPLAT_ABO13168-like Ly 36.2 96 0.0021 24.6 5.3 34 40-91 95-128 (163)
103 cd04501 SGNH_hydrolase_like_4 35.4 1.7E+02 0.0036 23.2 6.7 77 10-91 61-142 (183)
104 COG4586 ABC-type uncharacteriz 35.4 1.1E+02 0.0024 27.0 5.7 76 27-117 161-237 (325)
105 cd07569 DCase N-carbamyl-D-ami 35.0 2.2E+02 0.0048 25.0 7.9 38 80-117 220-259 (302)
106 PRK09997 hydroxypyruvate isome 34.0 2.1E+02 0.0045 24.4 7.5 62 22-92 80-142 (258)
107 cd02968 SCO SCO (an acronym fo 33.7 1.1E+02 0.0025 22.9 5.3 43 78-120 97-141 (142)
108 PF14419 SPOUT_MTase_2: AF2226 33.4 97 0.0021 24.7 4.6 44 10-54 1-46 (173)
109 cd02646 R3H_G-patch R3H domain 33.3 1.2E+02 0.0027 19.4 4.5 41 27-89 2-42 (58)
110 PF14488 DUF4434: Domain of un 32.8 2.2E+02 0.0048 22.8 6.8 69 25-95 18-86 (166)
111 PF10087 DUF2325: Uncharacteri 32.6 1.8E+02 0.004 20.6 6.0 40 172-221 46-86 (97)
112 cd07993 LPLAT_DHAPAT-like Lyso 32.3 1.8E+02 0.004 23.9 6.6 26 27-52 88-113 (205)
113 COG4175 ProV ABC-type proline/ 32.3 97 0.0021 28.0 5.0 70 33-117 175-245 (386)
114 PRK10528 multifunctional acyl- 32.2 1.5E+02 0.0032 24.0 5.9 69 10-91 73-146 (191)
115 PF09587 PGA_cap: Bacterial ca 32.0 3E+02 0.0066 23.4 8.1 74 27-115 171-246 (250)
116 cd07945 DRE_TIM_CMS Leptospira 30.4 2E+02 0.0043 25.3 6.7 35 20-54 108-142 (280)
117 COG1131 CcmA ABC-type multidru 29.4 2.2E+02 0.0047 25.1 6.9 72 33-119 147-219 (293)
118 cd01822 Lysophospholipase_L1_l 29.3 1.8E+02 0.004 22.6 6.0 58 21-91 82-139 (177)
119 PLN02399 phospholipid hydroper 28.4 3.5E+02 0.0076 23.1 7.7 25 23-47 115-139 (236)
120 COG1126 GlnQ ABC-type polar am 28.2 1.4E+02 0.0031 25.4 5.0 77 32-124 146-223 (240)
121 PF09391 DUF2000: Protein of u 27.9 72 0.0016 24.6 3.1 42 9-52 47-89 (133)
122 cd03018 PRX_AhpE_like Peroxire 27.3 2.8E+02 0.006 21.0 6.9 24 24-47 46-69 (149)
123 cd02072 Glm_B12_BD B12 binding 27.2 2.2E+02 0.0048 21.8 5.6 24 29-52 39-62 (128)
124 PRK00061 ribH 6,7-dimethyl-8-r 27.0 3.2E+02 0.0069 21.7 7.2 13 7-19 11-23 (154)
125 cd07986 LPLAT_ACT14924-like Ly 27.0 1.9E+02 0.0042 23.8 5.9 58 24-91 83-140 (210)
126 COG1603 RPP1 RNase P/RNase MRP 26.7 1.7E+02 0.0038 24.8 5.4 44 32-94 89-133 (229)
127 smart00037 CNX Connexin homolo 26.3 28 0.0006 19.8 0.4 9 157-165 22-30 (34)
128 COG3638 ABC-type phosphate/pho 26.0 81 0.0018 27.1 3.3 70 32-116 157-227 (258)
129 TIGR01766 tspaseT_teng_C trans 25.9 2E+02 0.0044 19.5 5.0 62 29-92 13-75 (82)
130 COG4555 NatA ABC-type Na+ tran 25.9 1.8E+02 0.0039 24.6 5.2 71 32-118 143-214 (245)
131 PRK11629 lolD lipoprotein tran 25.8 3.6E+02 0.0078 22.5 7.4 45 74-119 183-227 (233)
132 COG1066 Sms Predicted ATP-depe 25.8 3.9E+02 0.0084 25.2 7.8 38 74-111 197-243 (456)
133 PF13788 DUF4180: Domain of un 25.8 1.3E+02 0.0027 22.6 3.9 45 7-53 4-48 (113)
134 cd07992 LPLAT_AAK14816-like Ly 25.6 90 0.0019 25.6 3.6 25 28-52 98-122 (203)
135 PF02844 GARS_N: Phosphoribosy 25.4 56 0.0012 23.9 2.0 16 28-43 50-65 (100)
136 cd03293 ABC_NrtD_SsuB_transpor 25.3 3.9E+02 0.0083 22.0 7.9 45 74-118 169-215 (220)
137 PLN02901 1-acyl-sn-glycerol-3- 25.1 2.6E+02 0.0057 23.2 6.4 54 23-92 106-159 (214)
138 cd01828 sialate_O-acetylestera 24.6 3.4E+02 0.0073 21.0 7.0 72 10-91 50-128 (169)
139 PF08140 Cuticle_1: Crustacean 24.5 84 0.0018 18.7 2.2 16 237-252 1-16 (40)
140 COG1120 FepC ABC-type cobalami 24.0 1.3E+02 0.0029 26.1 4.4 75 28-117 144-219 (258)
141 COG1121 ZnuC ABC-type Mn/Zn tr 24.0 1E+02 0.0022 26.7 3.6 66 30-110 147-213 (254)
142 cd07574 nitrilase_Rim1_like Un 23.9 3.6E+02 0.0077 23.2 7.3 63 34-112 163-231 (280)
143 TIGR01184 ntrCD nitrate transp 23.9 3.8E+02 0.0082 22.3 7.2 67 35-116 127-194 (230)
144 PRK09283 delta-aminolevulinic 23.6 1.6E+02 0.0034 26.5 4.7 64 30-95 100-166 (323)
145 COG1117 PstB ABC-type phosphat 23.6 29 0.00064 29.4 0.3 67 34-116 161-227 (253)
146 PTZ00056 glutathione peroxidas 23.4 4.2E+02 0.0091 21.7 8.4 15 105-119 147-161 (199)
147 PF02126 PTE: Phosphotriestera 23.1 2.9E+02 0.0063 24.7 6.5 53 22-94 33-85 (308)
148 TIGR03234 OH-pyruv-isom hydrox 23.0 4.6E+02 0.01 22.1 8.9 61 23-92 80-141 (254)
149 cd07571 ALP_N-acyl_transferase 23.0 2.9E+02 0.0062 23.8 6.4 73 166-250 31-104 (270)
150 KOG0806 Carbon-nitrogen hydrol 22.7 81 0.0017 28.0 2.8 29 98-126 123-151 (298)
151 PTZ00261 acyltransferase; Prov 22.6 1.2E+02 0.0026 27.7 4.0 26 26-51 201-226 (355)
152 PRK10247 putative ABC transpor 22.6 4.1E+02 0.0089 22.0 7.1 41 74-114 175-215 (225)
153 PRK10584 putative ABC transpor 22.4 4.1E+02 0.0088 22.0 7.1 42 74-116 184-225 (228)
154 CHL00200 trpA tryptophan synth 22.3 2.1E+02 0.0046 24.9 5.3 31 153-183 203-233 (263)
155 PRK13650 cbiO cobalt transport 22.2 1.3E+02 0.0027 26.3 4.0 68 34-116 152-219 (279)
156 TIGR02314 ABC_MetN D-methionin 22.0 1.2E+02 0.0027 27.4 4.0 69 34-117 152-221 (343)
157 PRK09437 bcp thioredoxin-depen 21.9 1.1E+02 0.0025 23.6 3.4 17 104-120 121-137 (154)
158 KOG0807 Carbon-nitrogen hydrol 21.9 1.3E+02 0.0029 25.8 3.8 68 38-121 184-254 (295)
159 cd03297 ABC_ModC_molybdenum_tr 21.7 4.3E+02 0.0092 21.6 7.0 42 74-116 169-211 (214)
160 cd03256 ABC_PhnC_transporter A 21.7 4.1E+02 0.0089 22.1 7.1 42 74-116 182-224 (241)
161 PRK13635 cbiO cobalt transport 21.5 3.9E+02 0.0085 23.2 7.0 67 35-116 153-219 (279)
162 COG2089 SpsE Sialic acid synth 21.5 4.9E+02 0.011 23.6 7.3 71 21-93 24-109 (347)
163 cd03255 ABC_MJ0796_Lo1CDE_FtsE 21.3 4.6E+02 0.0099 21.4 7.2 40 74-114 178-217 (218)
164 KOG1114 Tripeptidyl peptidase 21.0 7.6E+02 0.017 26.1 9.2 102 110-222 310-411 (1304)
165 PRK13652 cbiO cobalt transport 20.8 4.4E+02 0.0095 22.8 7.2 69 33-116 148-217 (277)
166 PHA01633 putative glycosyl tra 20.7 1.7E+02 0.0036 26.5 4.5 78 173-272 222-300 (335)
167 TIGR00629 uvde UV damage endon 20.7 4.4E+02 0.0096 23.6 7.1 65 23-92 48-112 (312)
168 PF02811 PHP: PHP domain; Int 20.6 2.6E+02 0.0056 21.7 5.3 48 28-96 17-64 (175)
169 PRK13640 cbiO cobalt transport 20.6 4.3E+02 0.0094 22.9 7.1 67 35-116 156-222 (282)
170 PRK13633 cobalt transporter AT 20.3 5.4E+02 0.012 22.2 7.7 42 74-116 182-223 (280)
No 1
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=2.7e-54 Score=383.00 Aligned_cols=293 Identities=87% Similarity=1.398 Sum_probs=256.3
Q ss_pred CCCcceEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHH
Q 022243 4 GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (300)
Q Consensus 4 ~~~~~~~Ia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (300)
.|..+||||++|++..+|++.|++++.+++++|.+.|||||||||++++||.+.....++.+.+......+.++.|.++|
T Consensus 2 ~~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 81 (296)
T PLN02747 2 GMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLA 81 (296)
T ss_pred CCCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHH
Confidence 36678999999999878999999999999999999999999999999999977543334444444434447889999999
Q ss_pred HHcCcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCC
Q 022243 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWF 163 (300)
Q Consensus 84 ~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~ 163 (300)
++++++|++|++++.++++||++++|+++|+++++|+|.||+..+.+.|..+|.+|+..+.+|+++++|+|++||||.+|
T Consensus 82 ~~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~~~~~~~~~rig~~IC~D~~f 161 (296)
T PLN02747 82 KELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVAICWDQWF 161 (296)
T ss_pred HHcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCCeeEEcCCccEEEEEEccccc
Confidence 99999999999888788999999999999999999999999876666788889999755789999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEE
Q 022243 164 PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIA 242 (300)
Q Consensus 164 ~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~ 242 (300)
|+.++.++.+|+|+|++|++|+..++..+..+..+|+.+.+++|.+| +||+.+|++|.+....+.|.....|.|.|.|+
T Consensus 162 pe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~~~G~S~i~ 241 (296)
T PLN02747 162 PEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKITFYGGSFIA 241 (296)
T ss_pred hHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCceEeeeeEEE
Confidence 99999999999999999999977666666556789999999999999 99999999997532222243357899999999
Q ss_pred CCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCccccChhhHHHHHhccCC
Q 022243 243 GPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLDGS 296 (300)
Q Consensus 243 ~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 296 (300)
+|+|+++++.+.++++++++++|++.++..|..+++++|+|+++|..+++.++.
T Consensus 242 ~p~G~vl~~~~~~~e~~~~adid~~~~~~~r~~~~~~~~~r~~~~~~~~~~~~~ 295 (296)
T PLN02747 242 GPTGEIVAEADDKAEAVLVAEFDLDQIKSKRASWGVFRDRRPDLYKVLLTLDGN 295 (296)
T ss_pred CCCCCEeecCCCCCCcEEEEEEcHHHHHHHHHhCCchhhcChhHHHHHHhhccC
Confidence 999999999988789999999999999999999999999999999998887764
No 2
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=1.3e-54 Score=382.06 Aligned_cols=277 Identities=70% Similarity=1.186 Sum_probs=244.4
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCc
Q 022243 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (300)
Q Consensus 9 ~~Ia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v 88 (300)
||||++|+++.+|++.|++++.+++++|+++|+|||||||++++||.+.+....+.+.+.+...+++++.|+++|+++++
T Consensus 1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 80 (279)
T TIGR03381 1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGV 80 (279)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCc
Confidence 69999999988999999999999999999999999999999999997765433344555544445788999999999999
Q ss_pred EEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHHHH
Q 022243 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (300)
Q Consensus 89 ~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~~~ 168 (300)
+|++|+.+++++++||++++|+++|++++.|+|.||+..+.+.|..+|++|+..+.+|+++++|+|++||||++||+..+
T Consensus 81 ~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~D~~fpe~~r 160 (279)
T TIGR03381 81 VIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQWFPETAR 160 (279)
T ss_pred EEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEEEcCCcChHHHH
Confidence 99999988888899999999999999999999999987666678889999985578999999999999999999999999
Q ss_pred HHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCCCC
Q 022243 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGE 247 (300)
Q Consensus 169 ~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~ 247 (300)
.++++|||+|++|++|+..|+..+.....+|+.++++||.|| +|++.||++|.+... .++..|.|.|+|++|+|+
T Consensus 161 ~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~----~~~~~~~G~S~i~~p~G~ 236 (279)
T TIGR03381 161 AMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGD----GGEQTFYGSSFIADHTGE 236 (279)
T ss_pred HHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccCCC----CCcceEeeeEEEECCCCc
Confidence 999999999999999876555444456689999999999999 999999999965310 124678999999999999
Q ss_pred cccccCCCCCcEEEEEechhhHHhhhccCCCccccChhhHHH
Q 022243 248 IVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKV 289 (300)
Q Consensus 248 ~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~ 289 (300)
++++++.++++++++++|++.++..|..+++++|+|+++|+.
T Consensus 237 il~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~r~~~y~~ 278 (279)
T TIGR03381 237 LVAEAGRSEEAVLVATFDLDEIAKQRAAWGFFRDRRPELYGP 278 (279)
T ss_pred EeecCCCCCCceEEEEeCHHHHHHHHhcCchhhhCChhhccC
Confidence 999998888999999999999999999999999999999963
No 3
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.9e-52 Score=377.80 Aligned_cols=281 Identities=31% Similarity=0.459 Sum_probs=237.4
Q ss_pred CcceEEEEEeCCC-C-------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccc-hHHHhhcCCCCCChhH
Q 022243 6 RREVVVSALQFAC-T-------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR-EDFFQRAKPYKDHPTI 76 (300)
Q Consensus 6 ~~~~~Ia~~Q~~~-~-------~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 76 (300)
+..||||++|+++ . +|++.|++++.+++++|+++|+|||||||++++||...... ..+.+.++....++++
T Consensus 61 ~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~ 140 (363)
T cd07587 61 PRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTT 140 (363)
T ss_pred CceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHH
Confidence 4579999999985 2 58999999999999999999999999999999998532211 1122333333345788
Q ss_pred HHHHHHHHHcCcEEeeeeeeccC---CceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccE
Q 022243 77 LKMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKI 153 (300)
Q Consensus 77 ~~l~~~a~~~~v~iv~g~~~~~~---~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~i 153 (300)
+.|+++|++++++|++|+.++++ +++||++++|+++|++++.|+|.||+..+.+.|..+|.+|+..+.+|+++++||
T Consensus 141 ~~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~gri 220 (363)
T cd07587 141 KFCQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGKI 220 (363)
T ss_pred HHHHHHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCceE
Confidence 99999999999999999887753 689999999999999999999999998777889999999985578999999999
Q ss_pred EEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCcc--ccccC--
Q 022243 154 GVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEI--IETEH-- 228 (300)
Q Consensus 154 g~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~--~~~~~-- 228 (300)
|++||||++||+.++.++.+|||+|++|++|+.. .+..+|..++++||+|| |||+.+|++|.+. .....
T Consensus 221 G~~ICyD~~fPe~~r~la~~GAdiil~Psa~~~~------~~~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~ 294 (363)
T cd07587 221 AVNICYGRHHPLNWLMYGLNGAEIVFNPSATVGA------LSEPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGD 294 (363)
T ss_pred EEEEecccCCcHHHHHHHHcCCcEEEECCCcCCC------CchHHHHHHHHHHHHhcCcEEEEecccccccccccccccc
Confidence 9999999999999999999999999999997531 23468999999999999 9999999999652 11000
Q ss_pred C----CcceeeccceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCccccChhhHHHHHh
Q 022243 229 G----KSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 292 (300)
Q Consensus 229 g----~~~~~~~G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~~~~ 292 (300)
| .+...|.|.|.|++|+|++++.+...+|+++++++|++.++..|..++++.|+|+++|...+.
T Consensus 295 g~~~~~~~~~f~G~S~Ii~P~G~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~~~r~~~y~~~~~ 362 (363)
T cd07587 295 GKPAHKDFGHFYGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRMTARYEMYADFLA 362 (363)
T ss_pred ccccccccccccceeEEECCCCCCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCccCCHHHHHHHhc
Confidence 1 122468999999999999999887677999999999999999999999999999999987764
No 4
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.3e-51 Score=364.48 Aligned_cols=274 Identities=40% Similarity=0.685 Sum_probs=237.8
Q ss_pred cceEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHH
Q 022243 7 REVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (300)
Q Consensus 7 ~~~~Ia~~Q~~~~--------~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (300)
.+||||++|+++. ++.++|++++.+++++|+++|+|||||||++++||.+.+....+.+.++....+++++.
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKR 81 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHH
Confidence 4699999999964 78999999999999999999999999999999998765433334444444334578899
Q ss_pred HHHHHHHcCcEEeeeeeecc-CCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEe
Q 022243 79 MQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAI 157 (300)
Q Consensus 79 l~~~a~~~~v~iv~g~~~~~-~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~I 157 (300)
|+++|++++++|++|+.++. ++++||++++|+|+|++++.|+|+||++++.+.|..+|.+|+..+.+|+++++|+|++|
T Consensus 82 l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~~~f~~~~~~iG~~I 161 (287)
T cd07568 82 FAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPVFDTAFGKIGVYI 161 (287)
T ss_pred HHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCCceEEcCCceEEEEE
Confidence 99999999999999987764 46899999999999999999999999988878888999999854789999999999999
Q ss_pred eccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeec
Q 022243 158 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFY 236 (300)
Q Consensus 158 C~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~ 236 (300)
|||.+||++++.++++|||+|++|++|+.. .....|....++||.|| +|++.+|++|... +.+...|.
T Consensus 162 CyD~~fpe~~r~la~~Ga~li~~ps~~~~~------~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~-----~~~~~~~~ 230 (287)
T cd07568 162 CYDRHFPEGWRALGLNGAEIVFNPSATVAG------LSEYLWKLEQPAAAVANGYFVGAINRVGTEA-----PWNIGEFY 230 (287)
T ss_pred EecccCchHHHHHHHCCCeEEEECCcCCCC------CchhhhHHHHHHHHHHCCcEEEEeccccccC-----CCccceEe
Confidence 999999999999999999999999997531 13467888889999999 9999999999653 11224788
Q ss_pred cceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCccccChhhHHHHH
Q 022243 237 GNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLL 291 (300)
Q Consensus 237 G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~~~ 291 (300)
|.|+|++|+|+++++++.++++++++++|++.++.+|..+++++|+|+++|+.+.
T Consensus 231 G~S~ii~p~G~il~~~~~~~~~~l~a~id~~~~~~~R~~~~~~~~~r~~~y~~~~ 285 (287)
T cd07568 231 GSSYFVDPRGQFVASASRDKDELLVAELDLDLIREVRDTWQFYRDRRPETYGELT 285 (287)
T ss_pred ceeEEECCCceEEEecCCCCCeEEEEEecHHHHHHHHhhCchhhhcCHHHhHHhh
Confidence 9999999999999999888899999999999999999999999999999998654
No 5
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=4.6e-51 Score=360.49 Aligned_cols=279 Identities=63% Similarity=1.054 Sum_probs=241.7
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCc
Q 022243 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (300)
Q Consensus 9 ~~Ia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v 88 (300)
||||++|+++.+|++.|++++.+++++|.+.++|||||||++++||.+.+....+.+.+.+....++++.+.++|+++++
T Consensus 1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i 80 (284)
T cd07573 1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGV 80 (284)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCE
Confidence 79999999998999999999999999999999999999999999998765443444444422335788999999999999
Q ss_pred EEeeeeeecc-CCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHHH
Q 022243 89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 167 (300)
Q Consensus 89 ~iv~g~~~~~-~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~~ 167 (300)
+|++|+.++. ++++||++++++++|+++++|+|.||+..+.+.|..+|.+|+..+.+|+++++|+|++||||++||+++
T Consensus 81 ~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~fpe~~ 160 (284)
T cd07573 81 VIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWDQWFPEAA 160 (284)
T ss_pred EEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCCceEecCCceEEEEEeccccchHHH
Confidence 9999988765 458999999999999999999999998766677888999998447899999999999999999999999
Q ss_pred HHHHHcCCcEEEeeccCCCCCCCCC--CCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECC
Q 022243 168 RAMVLQGAEILFYPTAIGSEPQDDG--LDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 244 (300)
Q Consensus 168 ~~~~~~gadlii~ps~~~~~~~~~~--~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p 244 (300)
+.++.+|+|+|++|++|+..+.... ......|..++++||.|| +|+|.||++|..... + .+..|.|.|.|++|
T Consensus 161 r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~---~-~~~~~~G~S~i~~p 236 (284)
T cd07573 161 RLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDP---G-SGITFYGSSFIADP 236 (284)
T ss_pred HHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccCCC---C-CCceeeceeEEECC
Confidence 9999999999999999754322111 235578999999999999 999999999965311 0 14789999999999
Q ss_pred CCCcccccCCCCCcEEEEEechhhHHhhhccCCCccccChhhHHHHH
Q 022243 245 TGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLL 291 (300)
Q Consensus 245 ~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~~~ 291 (300)
+|+++++++.++++++++++|++.++.+|..+++++|+|+++|+.+.
T Consensus 237 ~G~i~~~~~~~~~~v~~a~id~~~~~~~r~~~~~~~~~~~~~~~~~~ 283 (284)
T cd07573 237 FGEILAQASRDEEEILVAEFDLDEIEEVRRAWPFFRDRRPDLYGALT 283 (284)
T ss_pred CCCeeeccCCCCCcEEEEEecHHHHHHHHhhChhhhhcChhhhhhhh
Confidence 99999999988899999999999999999999999999999998654
No 6
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=8.5e-51 Score=370.62 Aligned_cols=281 Identities=27% Similarity=0.452 Sum_probs=238.2
Q ss_pred CcceEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHH
Q 022243 6 RREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL 77 (300)
Q Consensus 6 ~~~~~Ia~~Q~~~~--------~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 77 (300)
+.+||||++|+++. .+.+.|++++.+++++|.+.|||||||||++++||........+.+.++... ++..+
T Consensus 84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~-g~~~~ 162 (405)
T PLN00202 84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVD-GESTK 162 (405)
T ss_pred CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCC-CHHHH
Confidence 57899999999972 5899999999999999999999999999999999854211111233333333 47789
Q ss_pred HHHHHHHHcCcEEeeeeeecc---CCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEE
Q 022243 78 KMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIG 154 (300)
Q Consensus 78 ~l~~~a~~~~v~iv~g~~~~~---~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig 154 (300)
.++++|++++++|++|+.+++ ++++||++++|+++|+++++|+|.||++++.|.|..+|.+|.....+|+++++|||
T Consensus 163 ~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~~vf~t~~gkiG 242 (405)
T PLN00202 163 FLQELARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIA 242 (405)
T ss_pred HHHHHHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCceEEEeCCCeEE
Confidence 999999999999999987754 35799999999999999999999999988888899999999865679999999999
Q ss_pred EEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccc--c--CC
Q 022243 155 VAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIET--E--HG 229 (300)
Q Consensus 155 ~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~--~--~g 229 (300)
++||||++||+.++.++.+|||+|++|++|+.. ....+|..++++||+|| +||+.||++|.+.... . .|
T Consensus 243 v~ICYD~~FPE~~r~la~~GAdiIl~Psa~~~~------~~~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g 316 (405)
T PLN00202 243 VNICYGRHHPLNWLAFGLNGAEIVFNPSATVGD------LSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDG 316 (405)
T ss_pred EEEccccccHHHHHHHHHCCCcEEEECCCCCCc------cCHHHHHHHHHHHHHhcCCEEEEeccccccccccccccccc
Confidence 999999999999999999999999999997531 23478999999999999 9999999999743100 0 01
Q ss_pred ----CcceeeccceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCccccChhhHHHHHhc
Q 022243 230 ----KSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTL 293 (300)
Q Consensus 230 ----~~~~~~~G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 293 (300)
.+...|.|.|.|++|+|++++.+...++++++++||++.++..|..+++++|+|+++|...+.+
T Consensus 317 ~~~~~~~~~f~G~S~Iv~P~G~vla~~~~~~E~llvadIDl~~v~~~R~~~~~~~~rR~~ly~~~~~~ 384 (405)
T PLN00202 317 KPQHKDFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMTARYEMYADFFAE 384 (405)
T ss_pred cccccccccccceeEEEcCCCCEeccCCCCCCcEEEEEeCHHHHHHHHHhCCcccccCHhHHHHHHHh
Confidence 1124689999999999999999876678999999999999999999999999999999998874
No 7
>PLN02504 nitrilase
Probab=100.00 E-value=5.9e-50 Score=360.00 Aligned_cols=275 Identities=24% Similarity=0.398 Sum_probs=232.3
Q ss_pred cceEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCcc-c-----------h---HHHhhcCCC
Q 022243 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-R-----------E---DFFQRAKPY 70 (300)
Q Consensus 7 ~~~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~-~-----------~---~~~~~~~~~ 70 (300)
++||||++|+++ ..|.+.|++++.+++++|.+.|+|||||||++++||..... . . .+...+...
T Consensus 23 ~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 102 (346)
T PLN02504 23 STVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAIDV 102 (346)
T ss_pred CceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhcccC
Confidence 469999999998 68999999999999999999999999999999999964210 0 1 122223222
Q ss_pred CCChhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCC-CceeeecC
Q 022243 71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTK 149 (300)
Q Consensus 71 ~~~~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~ 149 (300)
.++.++.|+++|++++++|++|+.++.++++||++++|+++|+++++|+|.|+.+ .|..+|.+|.. .+.+|+++
T Consensus 103 -~g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~----~E~~~f~~G~g~~~~vf~~~ 177 (346)
T PLN02504 103 -PGPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA----LERLIWGFGDGSTIPVYDTP 177 (346)
T ss_pred -CCHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCCc----ccceeeecCCCCCCceEEcC
Confidence 2477899999999999999999988888899999999999999999999988754 48888998863 47899999
Q ss_pred CccEEEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccc----
Q 022243 150 FAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEII---- 224 (300)
Q Consensus 150 ~~~ig~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~---- 224 (300)
++|||++||||.+||++.+.++.+|||+|++|++|+ .++|+.++++||+|| ||||.||++|....
T Consensus 178 ~griG~lICyD~~fPe~~r~la~~Gadii~~p~~~~----------~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~ 247 (346)
T PLN02504 178 IGKIGAVICWENRMPLLRTAMYAKGIEIYCAPTADS----------RETWQASMRHIALEGGCFVLSANQFCRRKDYPPP 247 (346)
T ss_pred CceEEEEEeccchhHHHHHHHHHCCCeEEEECCCCC----------chhHHHHHHHHHHccCcEEEEecccccccccCcc
Confidence 999999999999999999999999999999999852 368999999999999 99999999973211
Q ss_pred --------cccCCCcceeeccceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCcccc-ChhhHHHHHhccC
Q 022243 225 --------ETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDR-RPELYKVLLTLDG 295 (300)
Q Consensus 225 --------~~~~g~~~~~~~G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~ 295 (300)
+...+.+.+.|.|.|+|++|+|++++.....++++++++||++.+...|..+++++|. |+++|++.++..+
T Consensus 248 ~~~~~~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~~e~il~adiDl~~i~~~R~~~~~~~~~~r~d~~~l~~~~~~ 327 (346)
T PLN02504 248 PEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEGEGLITADLDLGEIARAKFDFDVVGHYSRPDVLSLTVNEHP 327 (346)
T ss_pred cccccccccccccccccccCcceEEECCCCCEecCCCCCCCcEEEEEEcHHHHHHHHhhCCccccCCCCcceEEEEcCCC
Confidence 1011223477899999999999999888766789999999999999999999999996 9999999887654
Q ss_pred C
Q 022243 296 S 296 (300)
Q Consensus 296 ~ 296 (300)
.
T Consensus 328 ~ 328 (346)
T PLN02504 328 L 328 (346)
T ss_pred C
Confidence 4
No 8
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=1.8e-49 Score=344.68 Aligned_cols=251 Identities=20% Similarity=0.338 Sum_probs=214.3
Q ss_pred ceEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHc
Q 022243 8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (300)
Q Consensus 8 ~~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (300)
+||||++|++. .+|++.|++++.+++++| .|+|||||||++++||...+.. . ....++..+.|+++|+++
T Consensus 3 ~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~~----~---~~~~~~~~~~l~~~A~~~ 73 (256)
T PRK10438 3 GLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAAA----S---SLPQDDVVAWMTAKAQQT 73 (256)
T ss_pred CCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccchh----h---ccccchHHHHHHHHHHHc
Confidence 49999999998 689999999999999975 6999999999999999654321 1 111246778999999999
Q ss_pred CcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHH
Q 022243 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEA 166 (300)
Q Consensus 87 ~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~ 166 (300)
++.|+++..++.++++||++++|+++|. ++.|+|.||++. +.|..+|.||+. +.+|+++++|||++||||++||+.
T Consensus 74 ~~~i~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~iG~~ICyD~~fPe~ 149 (256)
T PRK10438 74 NALIAGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM--ADEHLHYKAGNA-RVIVEWRGWRILPLVCYDLRFPVW 149 (256)
T ss_pred CeEEEEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC--CCccceecCCCC-ceEEEECCEEEEEEEEeecCCHHH
Confidence 9865544445556779999999999997 679999999753 358889999986 799999999999999999999999
Q ss_pred HHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCC
Q 022243 167 ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPT 245 (300)
Q Consensus 167 ~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~ 245 (300)
.+.+ +|+|+|++|++|+. ....+|+.+.++||.|| +||++||++|... ++..|.|.|.|++|+
T Consensus 150 ~r~l--~gad~i~~~s~~~~-------~~~~~~~~~~~aRA~En~~~vv~~n~~G~~~-------~~~~~~G~S~ivdP~ 213 (256)
T PRK10438 150 SRNR--NDYDLALYVANWPA-------PRSLHWQTLLTARAIENQAYVAGCNRVGSDG-------NGHHYRGDSRIINPQ 213 (256)
T ss_pred HHhh--cCCCEEEEecCCCC-------CchHHHHHHHHHHHHhcCcEEEEecccccCC-------CCCEEcCceEEECCC
Confidence 9986 78999999999854 23468999999999999 9999999999642 136789999999999
Q ss_pred CCcccccCCCCCcEEEEEechhhHHhhhccCCCccccChhhH
Q 022243 246 GEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELY 287 (300)
Q Consensus 246 G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~ 287 (300)
|+++++++.++++++++++|++.++..|..+++++|+++..|
T Consensus 214 G~vl~~~~~~~e~~i~~~idl~~~~~~R~~~~~l~~r~~~~~ 255 (256)
T PRK10438 214 GEIIATAEPHQATRIDAELSLEALQEYREKFPAWRDADEFTL 255 (256)
T ss_pred CcEEEEcCCCCcEEEEEEECHHHHHHHHHhCCccccCChhhc
Confidence 999999988889999999999999999999999999976544
No 9
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=1.7e-49 Score=352.10 Aligned_cols=275 Identities=27% Similarity=0.419 Sum_probs=229.4
Q ss_pred eEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCcc-------chH---HHhhcCCCCCChhHH
Q 022243 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-------RED---FFQRAKPYKDHPTIL 77 (300)
Q Consensus 9 ~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~-------~~~---~~~~~~~~~~~~~~~ 77 (300)
||||++|++. .+|++.|++++.+++++|++.|+|||||||++++||...+. .+. +.+.+... ..++++
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEV-DGPELE 79 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCC-CCHHHH
Confidence 7999999998 78999999999999999999999999999999999975321 111 12222222 347889
Q ss_pred HHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCC-CceeeecCCccEEEE
Q 022243 78 KMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTKFAKIGVA 156 (300)
Q Consensus 78 ~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~~ig~~ 156 (300)
.|+++|++++++|++|+.++.++++||++++|+++|+++++|+|.||+. .|..+|.+|.. .+.+|+++++|||++
T Consensus 80 ~l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~----~E~~~~~~g~~~~~~v~~~~~~kig~~ 155 (297)
T cd07564 80 RLAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPTH----AERLVWGQGDGSGLRVVDTPIGRLGAL 155 (297)
T ss_pred HHHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCCc----hhhhhcccCCCCCceEEecCCceEEEE
Confidence 9999999999999999888777899999999999999999999999754 57788998863 368999999999999
Q ss_pred eeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCcccc-cc------C
Q 022243 157 ICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIE-TE------H 228 (300)
Q Consensus 157 IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~-~~------~ 228 (300)
||||++||+..+.++.+|||+++++++... + ......+|..++++||+|| +|||.||++|..... .. .
T Consensus 156 ICyD~~fPe~~r~~a~~ga~ii~~~~~~~~-~---~~~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~~ 231 (297)
T cd07564 156 ICWENYMPLARYALYAQGEQIHVAPWPDFS-P---YYLSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEEA 231 (297)
T ss_pred EEhhcCCHHHHHHHHHCCCeEEEECCCCcc-c---ccccHHHHHHHHHHHHHhcCCEEEEcccccChhHccccccccccc
Confidence 999999999999999999999999776211 1 1135689999999999999 999999999964210 00 0
Q ss_pred CCcceeeccceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCccc-cChhhHHHHHh
Q 022243 229 GKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD-RRPELYKVLLT 292 (300)
Q Consensus 229 g~~~~~~~G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~-~~~~~~~~~~~ 292 (300)
+.+...+.|.|+|++|+|+++++++.++++++++++|++.++..|..+++++| +|+++|.+.++
T Consensus 232 ~~~~~~~~G~S~iv~P~G~il~~~~~~~e~~l~a~id~~~~~~~r~~~~~~~~~~r~~~~~~~~~ 296 (297)
T cd07564 232 DPLEVLGGGGSAIVGPDGEVLAGPLPDEEGILYADIDLDDIVEAKLDFDPVGHYSRPDVFSLTVD 296 (297)
T ss_pred ccccccCCCceEEECCCCCeecCCCCCCceEEEEEecHHHHHHHHhcCCCCCCCCCchhhceeeC
Confidence 11236789999999999999999987789999999999999999999999999 69999976543
No 10
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.3e-48 Score=339.36 Aligned_cols=250 Identities=34% Similarity=0.556 Sum_probs=222.1
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCc
Q 022243 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (300)
Q Consensus 10 ~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v 88 (300)
|||++|+++ .+|++.|++++.+++++|.+.|+|||||||++++||.+.+.. ..+.. ..+++++.|+++|+++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~----~~~~~-~~~~~~~~l~~~a~~~~~ 75 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLY----ELADE-DGGETVSFLSELAKKHGV 75 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHH----hhhcc-cCchHHHHHHHHHHHcCc
Confidence 699999999 699999999999999999999999999999999999765421 11122 235788999999999999
Q ss_pred EEeeeee-eccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHHH
Q 022243 89 VMPVSFF-EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 167 (300)
Q Consensus 89 ~iv~g~~-~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~~ 167 (300)
+|++|+. +..++++||++++|+++|++++.|+|+||+++ +.|..+|.+|+. +.+|+++++|+|++||||++||++.
T Consensus 76 ~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~-~~v~~~~~~rig~~IC~D~~~pe~~ 152 (253)
T cd07583 76 NIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDE-LEVFELDGGKVGLFICYDLRFPELF 152 (253)
T ss_pred EEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCC-ceEEEeCCeEEEEEEEeccccHHHH
Confidence 9999965 55677999999999999999999999999885 357788999986 7899999999999999999999999
Q ss_pred HHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCCC
Q 022243 168 RAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTG 246 (300)
Q Consensus 168 ~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G 246 (300)
+.++++|||+|++|++|+. ...++|+.+++.||.|| +|++++|++|.+. +..|.|.|.|++|+|
T Consensus 153 r~~~~~ga~ll~~ps~~~~-------~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~--------~~~~~G~S~ii~p~G 217 (253)
T cd07583 153 RKLALEGAEILFVPAEWPA-------ARIEHWRTLLRARAIENQAFVVACNRVGTDG--------GNEFGGHSMVIDPWG 217 (253)
T ss_pred HHHHHcCCcEEEECCCCCC-------CchHHHHHHHHHHHHHhCCEEEEEcCcccCC--------CceecceeEEECCCc
Confidence 9999999999999999754 35678999999999999 9999999999653 367899999999999
Q ss_pred CcccccCCCCCcEEEEEechhhHHhhhccCCCccccC
Q 022243 247 EIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 283 (300)
Q Consensus 247 ~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~ 283 (300)
+++++++. +++++++++|++.++..|..+++++|+|
T Consensus 218 ~il~~~~~-~~~~~~~~i~l~~~~~~r~~~~~~~~~~ 253 (253)
T cd07583 218 EVLAEAGE-EEEILTAEIDLEEVAEVRKKIPVFKDRR 253 (253)
T ss_pred hhheecCC-CceEEEEEecHHHHHHHHHhCCchhhcC
Confidence 99999886 7899999999999999999999999886
No 11
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=2.1e-48 Score=346.04 Aligned_cols=277 Identities=31% Similarity=0.436 Sum_probs=227.4
Q ss_pred cceEEEEEeCCC-CC--CHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccc---hHHHhhcCCCCCChhHHHHH
Q 022243 7 REVVVSALQFAC-TD--DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR---EDFFQRAKPYKDHPTILKMQ 80 (300)
Q Consensus 7 ~~~~Ia~~Q~~~-~~--~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~l~ 80 (300)
.+||||++|++. .+ +.++|++++.+++++|++.|||||||||++++||.+.... .+.....+....++..+.|.
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLF 81 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHH
Confidence 369999999987 44 8899999999999999999999999999999998643211 11111111112246778899
Q ss_pred HHHHHcCcEEeeeeeecc-CC---ceeeEEEEEcCCCCeeeeeeeccCCCCCCC--------CcceeecCCCCCceeeec
Q 022243 81 ELAKELGVVMPVSFFEEA-NN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGY--------QEKFYFNPGDTGFKVFQT 148 (300)
Q Consensus 81 ~~a~~~~v~iv~g~~~~~-~~---~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~--------~e~~~~~~G~~~~~~~~~ 148 (300)
++|++++++|++|++++. ++ ++||++++|+++|+++++|+|+||++++++ .|..+|.+|+..+.+|++
T Consensus 82 ~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v~~~ 161 (302)
T cd07569 82 DRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVFRV 161 (302)
T ss_pred HHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCceEec
Confidence 999999999999988653 34 799999999999999999999999876543 367789999834789999
Q ss_pred CCccEEEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCC---CCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccc
Q 022243 149 KFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEP---QDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEII 224 (300)
Q Consensus 149 ~~~~ig~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~---~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~ 224 (300)
+++|||++||||.+||++++.++.+|||+|++|++++... ..........|...+++||.|| +||+.+|++|...
T Consensus 162 ~~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~~- 240 (302)
T cd07569 162 PGGIMGMCICNDRRWPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAKAGMED- 240 (302)
T ss_pred CCceEEEEEeeccccchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEeeccccCC-
Confidence 9999999999999999999999999999999988753211 1101112356777788999999 9999999999653
Q ss_pred cccCCCcceeeccceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhcc-CCCccccChhhHHHHH
Q 022243 225 ETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSS-WGVFRDRRPELYKVLL 291 (300)
Q Consensus 225 ~~~~g~~~~~~~G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~-~~~~~~~~~~~~~~~~ 291 (300)
+..+.|.|.|++|+|+++++++.++++++++++|++.++..|.. ++++.|+|+++|..+.
T Consensus 241 -------~~~~~G~S~ii~p~G~vla~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~r~~~y~~~~ 301 (302)
T cd07569 241 -------GCDLIGGSCIVAPTGEIVAQATTLEDEVIVADCDLDLCREGRETVFNFARHRRPEHYGLIA 301 (302)
T ss_pred -------CceEecceEEECCCCCEEEecCCCCCcEEEEEecHHHhhhcccccCcchhhcCHHHHhhhh
Confidence 36789999999999999999988779999999999999999985 8999999999998654
No 12
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=1.1e-48 Score=339.96 Aligned_cols=252 Identities=34% Similarity=0.521 Sum_probs=222.5
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCc
Q 022243 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (300)
Q Consensus 10 ~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v 88 (300)
|||++|+++ .++++.|++++.+++++|.+.|+|||||||++++||.+.+.... .... ...+++..+.++|+++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~---~~~~-~~~~~~~~l~~~a~~~~~ 76 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVAR---LAEP-ADGPALQALRAIARRHGI 76 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhhh---hhcc-cCChHHHHHHHHHHHcCC
Confidence 699999999 79999999999999999999999999999999999976542211 1121 234788999999999999
Q ss_pred EEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHHHH
Q 022243 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (300)
Q Consensus 89 ~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~~~ 168 (300)
+|++|++++.++++||++++|+++|++++.|+|.||++. .|..+|.+|+. +.+|+++++|+|++||||++||++++
T Consensus 77 ~ii~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~---~E~~~~~~G~~-~~v~~~~~~kig~~IC~D~~fpe~~~ 152 (254)
T cd07576 77 AIVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFGD---SERAAFTPGDR-FPVVELRGLRVGLLICYDVEFPELVR 152 (254)
T ss_pred EEEEeccccCCCceEEEEEEECCCCCEeeEEEeeccCCc---chhhhccCCCC-ceEEEECCeEEEEEEeecCCCCHHHH
Confidence 999999888888999999999999999999999999762 47788999987 79999999999999999999999999
Q ss_pred HHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCCCC
Q 022243 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGE 247 (300)
Q Consensus 169 ~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~ 247 (300)
.++++|||+|++|++++. |+. ..|..++++||.|| +|+++||++|... +..|.|.|+|++|+|+
T Consensus 153 ~~~~~gadii~~p~~~~~-----~~~--~~~~~~~~~rA~en~~~vv~an~~G~~~--------~~~~~G~S~i~~p~G~ 217 (254)
T cd07576 153 ALALAGADLVLVPTALME-----PYG--FVARTLVPARAFENQIFVAYANRCGAED--------GLTYVGLSSIAGPDGT 217 (254)
T ss_pred HHHHCCCCEEEECCccCC-----Ccc--hhhhhhhHHHHHhCCCEEEEEcccCCCC--------CceeeeeeEEECCCCC
Confidence 999999999999998643 222 45778889999999 9999999999653 3678999999999999
Q ss_pred cccccCCCCCcEEEEEechhhHHhhhccCCCccccChh
Q 022243 248 IVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPE 285 (300)
Q Consensus 248 ~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~ 285 (300)
++++++.+ ++++++++|++.++..|..+++++|+|++
T Consensus 218 il~~~~~~-e~~~~~~id~~~~~~~R~~~~~~~~~~~~ 254 (254)
T cd07576 218 VLARAGRG-EALLVADLDPAALAAARRENPYLADRRPE 254 (254)
T ss_pred EeEecCCC-CeEEEEEcCHHHHHhhhhcCchhhhcCCC
Confidence 99999877 89999999999999999999999998864
No 13
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.1e-48 Score=340.71 Aligned_cols=263 Identities=37% Similarity=0.613 Sum_probs=223.7
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCc
Q 022243 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (300)
Q Consensus 10 ~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v 88 (300)
|||++|+++ .++++.|++++.+++++|.+.|+|||||||++++||.+.+... ..+.......++.++.+.++|+++++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDE-AFALAEEVPDGASTRAWAELAAELGL 79 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHHH-HHHhhccCCCCchHHHHHHHHHHcCc
Confidence 699999999 6899999999999999999999999999999999997654221 12222222234678899999999999
Q ss_pred EEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHHHH
Q 022243 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (300)
Q Consensus 89 ~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~~~ 168 (300)
+|++|++++.++++||++++++++|. ++.|+|.||+. .|..+|.+|+..+.+|+++++|+|++||||++||++.+
T Consensus 80 ~i~~G~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~----~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D~~fpe~~r 154 (268)
T cd07580 80 YIVAGFAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN----EEKLLFEPGDLGLPVFDTPFGRIGVAICYDGWFPETFR 154 (268)
T ss_pred EEEeecccccCCceEEEEEEECCCCc-EEEEEEecCCc----hhcceecCCCCCCceEEcCCCcEEEEEECcccchHHHH
Confidence 99999988778899999999999995 78999999976 47789999986578999999999999999999999999
Q ss_pred HHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCCCC
Q 022243 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGE 247 (300)
Q Consensus 169 ~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~ 247 (300)
.++.+|||+|++|++|+..... .......|..+.++||.|| +|||.||++|.+. +..+.|.|+|++|+|+
T Consensus 155 ~~~~~ga~li~~ps~~~~~~~~-~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~~--------~~~~~G~S~ii~p~G~ 225 (268)
T cd07580 155 LLALQGADIVCVPTNWVPMPRP-PEGGPPMANILAMAAAHSNGLFIACADRVGTER--------GQPFIGQSLIVGPDGW 225 (268)
T ss_pred HHHHcCCCEEEEcCcccccCCc-ccccCcHHHHhhHHHHhhCCcEEEEEeeeeecc--------CceEeeeeEEECCCCC
Confidence 9999999999999998642110 0112357888889999999 9999999999653 3678999999999999
Q ss_pred cccccCCC-CCcEEEEEechhhHHhhhcc--CCCccccChhhH
Q 022243 248 IVAAADDK-EEAVLVAQFDLDKLKSKRSS--WGVFRDRRPELY 287 (300)
Q Consensus 248 ~i~~~~~~-~~~~~~~~id~~~~~~~r~~--~~~~~~~~~~~~ 287 (300)
++++++.+ +++++++++|++.++.+|+. +++++|+|+++|
T Consensus 226 ~~~~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~r~~~y 268 (268)
T cd07580 226 PLAGPASGDEEEILLADIDLTAARRKRIWNSNDVLRDRRPDLY 268 (268)
T ss_pred eeeecCCCCCCeEEEEEecHHHHHHhhcCCcchhhhhcCcccC
Confidence 99998743 78999999999999999988 589999999876
No 14
>PLN02798 nitrilase
Probab=100.00 E-value=6.3e-48 Score=340.39 Aligned_cols=267 Identities=27% Similarity=0.445 Sum_probs=226.8
Q ss_pred CCCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccc-cCCCccCCccchHHHhhcCCCCCChhHHHHH
Q 022243 2 EKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAKPYKDHPTILKMQ 80 (300)
Q Consensus 2 ~~~~~~~~~Ia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (300)
+.+|..+||||++|++..+|++.|++++.+++++|+++|+|||||||+ +++||.+.+ ..+.++.. .++..+.|+
T Consensus 4 ~~~~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~----~~~~~~~~-~~~~~~~l~ 78 (286)
T PLN02798 4 AATAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGE----SLAIAEPL-DGPIMQRYR 78 (286)
T ss_pred cccccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchh----hhhhcccC-CCHHHHHHH
Confidence 356778999999999988999999999999999999999999999998 457775432 22222222 246789999
Q ss_pred HHHHHcCcEEeeee-eec--cCCceeeEEEEEcCCCCeeeeeeeccCCC-----CCCCCcceeecCCCCCceeeecCCcc
Q 022243 81 ELAKELGVVMPVSF-FEE--ANNAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFQTKFAK 152 (300)
Q Consensus 81 ~~a~~~~v~iv~g~-~~~--~~~~~yN~~~vi~~~G~i~~~~~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~~~ 152 (300)
++|++++++|++|. .++ +++++||++++|+++|++++.|+|.||+. .+.+.|..+|.||+. +.+|+++++|
T Consensus 79 ~~A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~k 157 (286)
T PLN02798 79 SLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKT-IVAVDSPVGR 157 (286)
T ss_pred HHHHHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCe-eeEEecCCce
Confidence 99999999999874 444 45789999999999999999999999943 223457788999985 7899999999
Q ss_pred EEEEeeccCCCHHHHHHHH-HcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCC
Q 022243 153 IGVAICWDQWFPEAARAMV-LQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGK 230 (300)
Q Consensus 153 ig~~IC~D~~~~~~~~~~~-~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~ 230 (300)
+|++||||++||+.++.++ ++|||+|++|++|+.. ....+|+.++++||+|| +|++.+|++|...
T Consensus 158 ~g~~IC~D~~fpe~~r~~a~~~Gadlil~ps~~~~~------~~~~~~~~~~~~rAien~~~vv~an~~G~~~------- 224 (286)
T PLN02798 158 LGLTVCYDLRFPELYQQLRFEHGAQVLLVPSAFTKP------TGEAHWEVLLRARAIETQCYVIAAAQAGKHN------- 224 (286)
T ss_pred EEEEEEEcccChHHHHHHHHhCCCcEEEECCcCCCC------CcHHHHHHHHHHHHHHhCCEEEEecccCcCC-------
Confidence 9999999999999999998 9999999999987531 23468888999999999 9999999999643
Q ss_pred cceeeccceEEECCCCCcccccCC-CCCcEEEEEechhhHHhhhccCCCccccChhhH
Q 022243 231 SQITFYGNSFIAGPTGEIVAAADD-KEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELY 287 (300)
Q Consensus 231 ~~~~~~G~S~i~~p~G~~i~~~~~-~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~ 287 (300)
.+..+.|.|+|++|+|+++++++. ++++++++++|++.++..|..+++++|+|++.|
T Consensus 225 ~~~~~~G~S~ii~p~G~il~~~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~ 282 (286)
T PLN02798 225 EKRESYGHALIIDPWGTVVARLPDRLSTGIAVADIDLSLLDSVRTKMPIAEHRRSLEF 282 (286)
T ss_pred CCceeeeeeEEECCCccchhhcCCCCCCCEEEEEecHHHHHHHHHhCcchhccchhhh
Confidence 136788999999999999999874 578999999999999999999999999999765
No 15
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.4e-48 Score=336.90 Aligned_cols=253 Identities=38% Similarity=0.630 Sum_probs=222.5
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCc
Q 022243 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (300)
Q Consensus 10 ~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v 88 (300)
|||++|++. .+|++.|++++.+++++|.+.++|||||||++++||.+.+......+..... ..+.++.|+++|+++++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~i 79 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPI-DGPTVRLFSELAKELGV 79 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCC-CCcHHHHHHHHHHHcCe
Confidence 699999998 7899999999999999999999999999999999997654333233333322 24678999999999999
Q ss_pred EEeeeeeeccC--CceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHH
Q 022243 89 VMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEA 166 (300)
Q Consensus 89 ~iv~g~~~~~~--~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~ 166 (300)
+|++|+++..+ +++||++++|+++|++++.|+|.||++ .|..+|.+|+. +.+|+++++|+|++||||++||++
T Consensus 80 ~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~-~~~~~~~~~~~g~~IC~D~~fpe~ 154 (258)
T cd07584 80 YIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQ-YPVFDTPFGKIGVMICYDMGFPEV 154 (258)
T ss_pred EEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCC-CeeEEcCCceEEEEEEcCccChHH
Confidence 99999887643 589999999999999999999999975 37778999986 789999999999999999999999
Q ss_pred HHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCC
Q 022243 167 ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPT 245 (300)
Q Consensus 167 ~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~ 245 (300)
.+.++++|+|++++|++|+. .....|+...++||.|| +||+.+|++|... +..+.|.|.+++|+
T Consensus 155 ~r~~~~~gadll~~ps~~~~-------~~~~~~~~~~~~rA~En~~~vv~~n~~g~~~--------~~~~~G~S~ii~p~ 219 (258)
T cd07584 155 ARILTLKGAEVIFCPSAWRE-------QDADIWDINLPARALENTVFVAAVNRVGNEG--------DLVLFGKSKILNPR 219 (258)
T ss_pred HHHHHHCCCcEEEECCccCC-------CCchHHHHHHHHHHHhCCcEEEEECccccCC--------CceecceeEEECCC
Confidence 99999999999999999864 23467888889999999 9999999999653 36789999999999
Q ss_pred CCcccccCCCCCcEEEEEechhhHHhhhccCCCccccC
Q 022243 246 GEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 283 (300)
Q Consensus 246 G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~ 283 (300)
|+++++++.++++++++++|++.++.+|..+|+++|+|
T Consensus 220 G~il~~~~~~~~~~~~~~id~~~~~~~r~~~p~~~~~~ 257 (258)
T cd07584 220 GQVLAEASEEAEEILYAEIDLDAIADYRMTLPYLKDRK 257 (258)
T ss_pred CceeeecCCCCCcEEEEEeCHHHHHHHHhhCchhhhcC
Confidence 99999998888999999999999999999999999886
No 16
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.8e-47 Score=335.00 Aligned_cols=263 Identities=30% Similarity=0.489 Sum_probs=223.4
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCc
Q 022243 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (300)
Q Consensus 10 ~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v 88 (300)
|||++|++. .+|++.|++++.+++++|+++|+|||||||++++||.+.+.. .+.+... ..+.++.|++.++ ++
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~---~~~~~~~-~~~~~~~l~~~a~--~~ 74 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLV---YEVAMHA-DDPRLQALAEASG--GI 74 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhh---hhhhccc-chHHHHHHHHHcC--CC
Confidence 699999998 689999999999999999999999999999999999765421 1212111 2345555555543 79
Q ss_pred EEeeeeeecc-CCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHHH
Q 022243 89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 167 (300)
Q Consensus 89 ~iv~g~~~~~-~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~~ 167 (300)
.|++|++++. ++++||++++| ++|++++.|+|+|||.++.|.|..+|++|+. +.+|+++++|||++||||++||++.
T Consensus 75 ~ii~G~~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~-~~vf~~~~~~ig~~IC~D~~fp~~~ 152 (269)
T cd07586 75 CVVFGFVEEGRDGRFYNSAAYL-EDGRVVHVHRKVYLPTYGLFEEGRYFAPGSH-LRAFDTRFGRAGVLICEDAWHPSLP 152 (269)
T ss_pred EEEEeCeEEcCCCcEEEEEEEe-cCCEEEEEEEeEeCCCCCccceeeeecCCCc-ceEEEeCCeEEEEEEEeccCCcHHH
Confidence 9999988776 48999999999 8999999999999988766778889999986 7999999999999999999999999
Q ss_pred HHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCCC
Q 022243 168 RAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTG 246 (300)
Q Consensus 168 ~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G 246 (300)
+.+..+|||+|++|++|+............+|..+.+.||.|+ ++||+||++|.+. +..+.|.|.+++|+|
T Consensus 153 ~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~--------~~~~~G~S~ii~p~G 224 (269)
T cd07586 153 YLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVED--------GVYFWGGSRVVDPDG 224 (269)
T ss_pred HHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCcC--------CceEeCCcEEECCCC
Confidence 9999999999999999754211111123468999999999999 9999999999654 357889999999999
Q ss_pred CcccccCCCCCcEEEEEechhhHHhhhccCCCccccChhhHH
Q 022243 247 EIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYK 288 (300)
Q Consensus 247 ~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~ 288 (300)
+++++++.++++++++++|++.++..|..+++++++++++|+
T Consensus 225 ~il~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~ 266 (269)
T cd07586 225 EVVAEAPLFEEDLLVAELDRSAIRRARFFSPTFRDEDIRLVL 266 (269)
T ss_pred CEEEecCCccccEEEEEecHHHHHHHHhhCccccccChhhhh
Confidence 999999888889999999999999999999999999999886
No 17
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.3e-47 Score=336.50 Aligned_cols=251 Identities=29% Similarity=0.447 Sum_probs=208.8
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcE
Q 022243 10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (300)
Q Consensus 10 ~Ia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~ 89 (300)
|||++|+++..|++.|++++.+++++|+++++|||||||++++||.... ...... ..+.++.|+++|++++++
T Consensus 1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~------~~~~~~-~~~~~~~l~~lA~~~~i~ 73 (279)
T cd07579 1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPA------SEAESD-TGPAVSALRRLARRLRLY 73 (279)
T ss_pred CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChH------HhcccC-CCHHHHHHHHHHHHcCeE
Confidence 6999999995699999999999999999999999999999999985421 111222 247889999999999999
Q ss_pred EeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHHHHH
Q 022243 90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARA 169 (300)
Q Consensus 90 iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~~~~ 169 (300)
|++|++++.++++||++++|+++| +++.|+|.||++ .|..+|.+|+. +.+|+++++|+|++||||++||++++.
T Consensus 74 iv~G~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~----~E~~~f~~G~~-~~v~~~~~~kiG~~ICyD~~fPe~~r~ 147 (279)
T cd07579 74 LVAGFAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE----PERSWATPGDT-WPVYDLPLGRVGLLIGHDALFPEAGRV 147 (279)
T ss_pred EEEeceEccCCcEEEEEEEEeCCe-eEEEEecccCCC----cchhhccCCCC-CeeEEcCceeEEEEEeccccCcHHHHH
Confidence 999998887889999999999999 679999999976 47789999986 799999999999999999999999999
Q ss_pred HHHcCCcEEEeeccCCCCCCCCCC-----------C--cHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceee
Q 022243 170 MVLQGAEILFYPTAIGSEPQDDGL-----------D--SRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITF 235 (300)
Q Consensus 170 ~~~~gadlii~ps~~~~~~~~~~~-----------~--~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~ 235 (300)
++++|||+|++|++|+......|+ . ..++|+ ++++||+|| +|||.||++|.. ..+
T Consensus 148 ~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~~g~~----------~~~ 216 (279)
T cd07579 148 LALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANVPDPA----------RGY 216 (279)
T ss_pred HHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeeccCCc----------ccc
Confidence 999999999999998531100111 0 125787 689999999 999999999853 246
Q ss_pred ccceEEECCCCCcccc----cCCCCCcEEEEEechhhHHhhhccCCCccccChhhHH
Q 022243 236 YGNSFIAGPTGEIVAA----ADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYK 288 (300)
Q Consensus 236 ~G~S~i~~p~G~~i~~----~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~ 288 (300)
.|.|+|++|.|.++.. + ..+|++++++||++.++. .++++++||+++|+
T Consensus 217 ~G~S~ii~P~G~v~~~~~~~~-~~~e~~l~a~id~~~~~~---~~~~~~~rr~~~~~ 269 (279)
T cd07579 217 TGWSGVFGPDTFAFPRQEAAI-GDEEGIAWALIDTSNLDS---RYPTNVVRRKDLVR 269 (279)
T ss_pred ccccEEECCCeEEcchhhccc-CCCCcEEEEEecchhhcc---cCCchhhhhHHHHH
Confidence 8999999999999733 3 346789999999998887 45667777777664
No 18
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.6e-47 Score=332.56 Aligned_cols=257 Identities=32% Similarity=0.531 Sum_probs=223.9
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCc
Q 022243 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (300)
Q Consensus 10 ~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v 88 (300)
|||++|+++ .+|++.|++++.+++++|++.|+|||||||++++||.+.+... .. ......+.++.++++|+++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~---~~-~~~~~~~~~~~l~~~a~~~~~ 76 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALS---RE-AEVPDGPSTQALSDLARRYGL 76 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccc---hh-cccCCChHHHHHHHHHHHcCc
Confidence 699999998 7999999999999999999999999999999999997654211 10 112234678899999999999
Q ss_pred EEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHHHH
Q 022243 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (300)
Q Consensus 89 ~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~~~ 168 (300)
+|++|++++.++++||++++|+++|. +..|+|.||++ .|..+|.+|+. +.+|+++++|+|++||||++||++++
T Consensus 77 ~i~~G~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~----~E~~~~~~G~~-~~v~~~~~~rig~~IC~D~~~pe~~r 150 (261)
T cd07585 77 TILAGLIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFR----REHPYIAAGDE-YPVFATPGVRFGILICYDNHFPENVR 150 (261)
T ss_pred EEEEeccccCCCceeEEEEEECCCCc-EeEEeeecCCc----cccceEcCCCC-CceEEcCCceEEEEEEcCCcCcHHHH
Confidence 99999988878899999999999997 68999999987 37789999986 78999999999999999999999999
Q ss_pred HHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCCCC
Q 022243 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGE 247 (300)
Q Consensus 169 ~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~ 247 (300)
.++++|||+|++|++|+.. .+....+.|...+++||.|+ +|++.+|.+|... +..+.|.|+|++|+|+
T Consensus 151 ~l~~~gadlil~p~~~~~~---~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~~--------~~~~~G~S~i~~p~G~ 219 (261)
T cd07585 151 ATALLGAEILFAPHATPGT---TSPKGREWWMRWLPARAYDNGVFVAACNGVGRDG--------GEVFPGGAMILDPYGR 219 (261)
T ss_pred HHHHCCCCEEEECCccCCC---CCcchHHHHHHHhHHHHhhcCeEEEEecccccCC--------CceecceEEEECCCCC
Confidence 9999999999999987541 11124578888899999999 9999999999643 4678999999999999
Q ss_pred cccccCCCCCcEEEEEechhhHHhhhcc--CCCccccChhhH
Q 022243 248 IVAAADDKEEAVLVAQFDLDKLKSKRSS--WGVFRDRRPELY 287 (300)
Q Consensus 248 ~i~~~~~~~~~~~~~~id~~~~~~~r~~--~~~~~~~~~~~~ 287 (300)
++++++.++++++++++|++.++..|.. .++++|+|+++|
T Consensus 220 v~~~~~~~~e~~l~~~id~~~~~~~r~~~~~~~~~~~~~~~~ 261 (261)
T cd07585 220 VLAETTSGGDGMVVADLDLDLINTVRGRRWISFLRARRPELY 261 (261)
T ss_pred EEeccCCCCCcEEEEEecHHHHHHhhccccCccccccCccCC
Confidence 9999998889999999999999999976 578999998876
No 19
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=4.7e-47 Score=331.64 Aligned_cols=256 Identities=36% Similarity=0.542 Sum_probs=220.1
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcE
Q 022243 10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (300)
Q Consensus 10 ~Ia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~ 89 (300)
|||++|+++.++++.|++++.+++++|+++++|||||||++++||.+.+... ........++..+.|.++|++++++
T Consensus 1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~---~~~~~~~~~~~~~~l~~~a~~~~i~ 77 (265)
T cd07572 1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKL---ALAEEEGDGPTLQALSELAKEHGIW 77 (265)
T ss_pred CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhh---hhhccccCChHHHHHHHHHHHCCeE
Confidence 6999999988999999999999999999999999999999999987643211 1011222346789999999999999
Q ss_pred Eeee-eeeccC--CceeeEEEEEcCCCCeeeeeeeccCCC-----CCCCCcceeecCCCCCceeeecCCccEEEEeeccC
Q 022243 90 MPVS-FFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQ 161 (300)
Q Consensus 90 iv~g-~~~~~~--~~~yN~~~vi~~~G~i~~~~~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~ 161 (300)
|++| .+++.+ +++||++++++++|++++.|+|+||++ .+.|.|..+|++|+. +.+|+++++|+|++||||.
T Consensus 78 i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~ 156 (265)
T cd07572 78 LVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDE-VVVVDTPFGKIGLGICYDL 156 (265)
T ss_pred EEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCc-ceEEecCCceEEEEEEecc
Confidence 9988 445555 789999999999999999999999953 223568889999986 7899999999999999999
Q ss_pred CCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceE
Q 022243 162 WFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSF 240 (300)
Q Consensus 162 ~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~ 240 (300)
+||++++.++.+|||+|++|++|+.. ....+|..+.+.||.|+ ++++.||++|.+. ++..+.|.|+
T Consensus 157 ~~pe~~r~~~~~gadli~~p~~~~~~------~~~~~~~~~~~~rA~e~~~~vv~~n~~G~~~-------~~~~~~G~S~ 223 (265)
T cd07572 157 RFPELARALARQGADILTVPAAFTMT------TGPAHWELLLRARAIENQCYVVAAAQAGDHE-------AGRETYGHSM 223 (265)
T ss_pred CcHHHHHHHHHCCCCEEEECCCCCCC------cchHHHHHHHHHHHHhcCCEEEEEcccccCC-------CCCeecceeE
Confidence 99999999999999999999987531 23467888899999999 9999999999653 2367899999
Q ss_pred EECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCccccC
Q 022243 241 IAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 283 (300)
Q Consensus 241 i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~ 283 (300)
|++|+|+++++++.+ ++++++++|++.+...|..+++++|+|
T Consensus 224 i~~p~G~il~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~~~~ 265 (265)
T cd07572 224 IVDPWGEVLAEAGEG-EGVVVAEIDLDRLEEVRRQIPVLKHRR 265 (265)
T ss_pred EECCCcHHHhhcCCC-CcEEEEEeCHHHHHHHHHhCcchhhcC
Confidence 999999999999877 899999999999999999999998875
No 20
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=1.9e-46 Score=330.99 Aligned_cols=257 Identities=24% Similarity=0.335 Sum_probs=215.8
Q ss_pred eEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh--CCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHH
Q 022243 9 VVVSALQFAC-----TDDVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (300)
Q Consensus 9 ~~Ia~~Q~~~-----~~~~~~n~~~~~~~i~~A~~--~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (300)
++||++|+++ .++++.|++++.+++++|++ .|+|||||||++++||..... ...+.+.... ++.++.|++
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~--~~~~~a~~~~-~~~~~~l~~ 77 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKW--TMDETACTVP-GPETDIFAE 77 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcc--hhhhhccCCC-ChhHHHHHH
Confidence 5799999997 47999999999999999986 499999999999999875321 1222333222 477899999
Q ss_pred HHHHcCcEEeeeeeeccC---CceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecC-CccEEEEe
Q 022243 82 LAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGVAI 157 (300)
Q Consensus 82 ~a~~~~v~iv~g~~~~~~---~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ig~~I 157 (300)
+|+++++++++|+.++.+ +++||++++|+++|+++++|+|+||+. +...|.+|+..+.++++. +.|||++|
T Consensus 78 lA~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~~~v~~~~~g~riG~~I 152 (291)
T cd07565 78 ACKEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLGTPVCEGPKGSKIALII 152 (291)
T ss_pred HHHHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCCceeeECCCCCEEEEEE
Confidence 999999999999887653 689999999999999999999999843 223478998546788885 66999999
Q ss_pred eccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeec
Q 022243 158 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFY 236 (300)
Q Consensus 158 C~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~ 236 (300)
|||++|||+++.++++|||+|++|++|+. ....+|..+.++||.|| +||+.||++|.+. +..+.
T Consensus 153 CyD~~fPe~~r~la~~GAdill~ps~~~~-------~~~~~w~~~~~aRA~En~~~vv~aN~~G~~~--------~~~~~ 217 (291)
T cd07565 153 CHDGMYPEIARECAYKGAELIIRIQGYMY-------PAKDQWIITNKANAWCNLMYTASVNLAGFDG--------VFSYF 217 (291)
T ss_pred EcCCCCcHHHHHHHHCCCeEEEECCcCCC-------CcchHHHHHHHHHHHhcCcEEEEecccccCC--------Cceee
Confidence 99999999999999999999999999753 23467888999999999 9999999999643 36789
Q ss_pred cceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCccccChhhHHHHHh
Q 022243 237 GNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 292 (300)
Q Consensus 237 G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~~~~ 292 (300)
|.|+|++|+|+++++++.++++++++++|++.++..|..+++ +.++|++-.+
T Consensus 218 G~S~ivdP~G~ila~~~~~~e~i~~adid~~~~~~~R~~~~~----~~~~~~~~~~ 269 (291)
T cd07565 218 GESMIVNFDGRTLGEGGREPDEIVTAELSPSLVRDARKNWGS----ENNLYKLGHR 269 (291)
T ss_pred eeeEEECCCCCEEEeCCCCCCcEEEEEEcHHHHHHHHhcCCC----CCcHHHhhhh
Confidence 999999999999999987778999999999999999999886 3377766543
No 21
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5.2e-47 Score=330.30 Aligned_cols=255 Identities=38% Similarity=0.632 Sum_probs=218.1
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCc
Q 022243 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (300)
Q Consensus 10 ~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v 88 (300)
|||++|++. .+|++.|++++.+++++|. +|||||||++++||.+.. ...+.+.++....+++++.|+++|+++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 76 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTS-KEEVASLAESIPDGPTTRFLQELARETGA 76 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCC-HHHHHHhhcccCCChHHHHHHHHHHHhCc
Confidence 699999998 6899999999999999884 999999999999997543 12233333332235788999999999999
Q ss_pred EEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHHHH
Q 022243 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (300)
Q Consensus 89 ~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~~~ 168 (300)
+|++|++++.++++||++++|+++| +++.|+|.||++ .|..+|++|+..+.+|+++++|+|++||||++||++++
T Consensus 77 ~ii~G~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~----~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~fpe~~r 151 (259)
T cd07577 77 YIVAGLPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY----EEKLFFEPGDTGFRVFDIGDIRIGVMICFDWYFPEAAR 151 (259)
T ss_pred EEEecceeccCCceEEEEEEECCCc-cEeeEeeccCCh----hhhccccCCCCCCceEEeCCcEEEEEEEcCcccchHHH
Confidence 9999998888889999999999999 899999999975 47788999984478999999999999999999999999
Q ss_pred HHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCCCC
Q 022243 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGE 247 (300)
Q Consensus 169 ~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~ 247 (300)
.++.+|||+|++|++|+. ..|...+++||+|| +|+++||++|.... +.++..+.|.|+|++|+|+
T Consensus 152 ~~~~~Gadli~~ps~~~~----------~~~~~~~~~rA~en~~~vv~~n~~G~~~~----~~~~~~~~G~S~i~~p~G~ 217 (259)
T cd07577 152 TLALKGADIIAHPANLVL----------PYCPKAMPIRALENRVFTITANRIGTEER----GGETLRFIGKSQITSPKGE 217 (259)
T ss_pred HHHHcCCCEEEECCccCC----------chhhhhhhHhhhhcCceEEEEecCcccCC----CCCCceEeeeeEEECCCCC
Confidence 999999999999999642 24666778999999 99999999996631 1124678999999999999
Q ss_pred cccccCCCCCcEEEEEechhhHHhhh--ccCCCccccChhhH
Q 022243 248 IVAAADDKEEAVLVAQFDLDKLKSKR--SSWGVFRDRRPELY 287 (300)
Q Consensus 248 ~i~~~~~~~~~~~~~~id~~~~~~~r--~~~~~~~~~~~~~~ 287 (300)
++++++.++++++++++|++.++..| ..+++++|+|+++|
T Consensus 218 i~~~~~~~~e~~~~~~id~~~~~~~~~~~~~~~~~~~r~~~~ 259 (259)
T cd07577 218 VLARAPEDGEEVLVAEIDPRLARDKRINEENDIFKDRRPEFY 259 (259)
T ss_pred EEeecCCCCCcEEEEEEchHHhhcccccccCchhhhcCcccC
Confidence 99999888899999999999988755 67788999998775
No 22
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.8e-46 Score=326.12 Aligned_cols=252 Identities=31% Similarity=0.551 Sum_probs=219.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEE
Q 022243 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (300)
Q Consensus 11 Ia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~i 90 (300)
||++|++..+|++.|++++.+++++|+++|+|||||||++++||...+.. +.+...+. .+++++.|.++|++++++|
T Consensus 1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~--~~~~~~~~-~~~~~~~l~~~a~~~~i~i 77 (255)
T cd07581 1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDD--YARVAEPL-DGPFVSALARLARELGITV 77 (255)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhh--HHhhhccC-CCHHHHHHHHHHHHcCeEE
Confidence 68999999899999999999999999999999999999999998654321 12222222 2478899999999999999
Q ss_pred eeeeeeccCC-ceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCC-ceeeecCCccEEEEeeccCCCHHHHH
Q 022243 91 PVSFFEEANN-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG-FKVFQTKFAKIGVAICWDQWFPEAAR 168 (300)
Q Consensus 91 v~g~~~~~~~-~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~-~~~~~~~~~~ig~~IC~D~~~~~~~~ 168 (300)
++|++++.++ ++||++++|+++|+++..|+|.||+....+.|..+|++|+.. ..+++++++|+|++||||.+||++.+
T Consensus 78 v~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D~~~pe~~~ 157 (255)
T cd07581 78 VAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELPPVVFVVGGVKVGLATCYDLRFPELAR 157 (255)
T ss_pred EEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCCceEEecCCceEEEEEEecccCHHHHH
Confidence 9999887654 899999999999999999999999876566788899999852 46788888999999999999999999
Q ss_pred HHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCCCC
Q 022243 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGE 247 (300)
Q Consensus 169 ~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~ 247 (300)
.++++|||+|++|++|+..+ ...++|..+.+.||.|| +|++.||.+|. .+.|.|+|++|+|+
T Consensus 158 ~~~~~ga~lil~ps~~~~~~-----~~~~~~~~~~~~rA~en~~~vv~~n~~g~------------~~~G~S~i~~p~G~ 220 (255)
T cd07581 158 ALALAGADVIVVPAAWVAGP-----GKEEHWETLLRARALENTVYVAAAGQAGP------------RGIGRSMVVDPLGV 220 (255)
T ss_pred HHHHCCCcEEEECCcccCCC-----CchHHHHHHHHHHHHHhCCEEEEEcCcCC------------CcccceEEECCCcc
Confidence 99999999999999985421 24678999999999999 99999999982 57899999999999
Q ss_pred cccccCCCCCcEEEEEechhhHHhhhccCCCccccC
Q 022243 248 IVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 283 (300)
Q Consensus 248 ~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~ 283 (300)
++++.+. +++++++++|++.++..|..++++.|+|
T Consensus 221 i~~~~~~-~~~~l~~~id~~~~~~~r~~~~~~~~~~ 255 (255)
T cd07581 221 VLADLGE-REGLLVADIDPERVEEAREALPVLENRR 255 (255)
T ss_pred eeeecCC-CCcEEEEEeCHHHHHHHHHhCcchhcCC
Confidence 9999976 4899999999999999999999998886
No 23
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=4.4e-46 Score=323.07 Aligned_cols=248 Identities=24% Similarity=0.389 Sum_probs=216.5
Q ss_pred eEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcC
Q 022243 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (300)
Q Consensus 9 ~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (300)
||||++|+++ .+|++.|++++.+++++|++ |+|||||||++++||.+.+. +.++.. .++.++.|+++|++++
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~-----~~~~~~-~~~~~~~l~~la~~~~ 73 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAE-----ALAEPM-NGPTLQWMKAQAKKKG 73 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHH-----Hhhccc-CChHHHHHHHHHHHCC
Confidence 7999999999 69999999999999999997 99999999999999975432 122222 2477899999999999
Q ss_pred cEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHHH
Q 022243 88 VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 167 (300)
Q Consensus 88 v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~~ 167 (300)
++|++|.+++.++++||++++++++|++ ..|+|+||++.+ .|..+|.+|+. ..+|+++++|+|++||||++||++.
T Consensus 74 i~i~~~~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~--~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~~~pe~~ 149 (252)
T cd07575 74 AAITGSLIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRMA--GEHKVYTAGNE-RVIVEYKGWKILLQVCYDLRFPVWS 149 (252)
T ss_pred eEEEEEEEEccCCceEEEEEEECCCCCE-EEEeeeecCCCC--CccceecCCCC-ceEEEECCEEEEEEEEeccCChHHH
Confidence 9999888877788999999999999985 599999997643 47788999985 7899999999999999999999999
Q ss_pred HHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCCC
Q 022243 168 RAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTG 246 (300)
Q Consensus 168 ~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G 246 (300)
+.+.. +|+|++|++|+. .....|+...++||.|| +|++.||++|.+. .+..+.|.|+|++|+|
T Consensus 150 r~~~~--a~lil~~s~~~~-------~~~~~~~~~~~arA~en~~~vv~~n~~G~~~-------~~~~~~G~S~i~~p~G 213 (252)
T cd07575 150 RNTND--YDLLLYVANWPA-------PRRAAWDTLLKARAIENQAYVIGVNRVGTDG-------NGLEYSGDSAVIDPLG 213 (252)
T ss_pred HhhcC--CCEEEEeCCCCC-------CchHHHHHHhHHHHhhccceEEEecccccCC-------CCceEcceeEEECCCC
Confidence 88754 999999999854 24578988899999999 9999999999653 1367889999999999
Q ss_pred CcccccCCCCCcEEEEEechhhHHhhhccCCCccccCh
Q 022243 247 EIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRP 284 (300)
Q Consensus 247 ~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~ 284 (300)
+++++++.+ ++++++++|++.++..|..+++++|++.
T Consensus 214 ~~l~~~~~~-e~~i~~~id~~~~~~~r~~~~~~~~~~~ 250 (252)
T cd07575 214 EPLAEAEED-EGVLTATLDKEALQEFREKFPFLKDADS 250 (252)
T ss_pred ceeeEcCCC-ceEEEEEECHHHHHHHHhhCCcccccCc
Confidence 999999877 8999999999999999999999998864
No 24
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=6.5e-46 Score=325.90 Aligned_cols=263 Identities=39% Similarity=0.598 Sum_probs=227.1
Q ss_pred ceEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHc
Q 022243 8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (300)
Q Consensus 8 ~~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (300)
.||||++|++. .+|.+.|++++.+++++|++.+||||||||++++||.+.+ ..+.+........+.++.+.++|+++
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~--~~~~~~~~~~~~~~~~~~l~~~a~~~ 79 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED--DLFLEEAAAEAGEETLEFLAALAEEG 79 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc--HHHHHhhhhccCChHHHHHHHHHHhC
Confidence 68999999998 8999999999999999999999999999999999998875 33444444445568889999999977
Q ss_pred CcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHH
Q 022243 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEA 166 (300)
Q Consensus 87 ~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~ 166 (300)
+++|++|...... ..||++++++++|++++.|+|.||++. .+.|+.++.||+....+|+++++|+|++||||++||++
T Consensus 80 ~~~ivg~~~~~~~-~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~D~~fPe~ 157 (274)
T COG0388 80 GVIIVGGPLPERE-KLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGVVVFETDGGKIGLLICYDLRFPEL 157 (274)
T ss_pred CeEEEEeeeeccc-cceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccceeEEeCCceEEEEEEeeccCHHH
Confidence 7777777543333 899999999999999999999999986 56789999999863359999999999999999999998
Q ss_pred HHHH-HHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECC
Q 022243 167 ARAM-VLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 244 (300)
Q Consensus 167 ~~~~-~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p 244 (300)
.+.+ +..||++|++|++|+.. ....+|..++++||.|| ++|+.+|+.|.... ...|.|.|.|++|
T Consensus 158 ~~~~~a~~Gaeii~~p~a~~~~------~~~~~w~~l~~arA~en~~~vv~~n~~g~~~~-------~~~~~G~S~i~~p 224 (274)
T COG0388 158 ARRLLALGGAELLLVPAAWPAE------RGLDHWEVLLRARAIENQVYVLAANRAGFDGA-------GLEFCGHSAIIDP 224 (274)
T ss_pred HHHHHHhcCCeEEEEcCCCCCc------ccHHHHHHHHHHHhhhcCceEEEecccCCCCC-------ccEEecceEEECC
Confidence 8877 78899999999998652 12589999999999999 99999999996531 2789999999999
Q ss_pred CCCcccccCCCCCcEEEEEechhhHHhhhccCCCccccChhhH
Q 022243 245 TGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELY 287 (300)
Q Consensus 245 ~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~ 287 (300)
+|++++++..++++++++++|++.++..|...+.+.+++...+
T Consensus 225 ~G~v~~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~~~~~~ 267 (274)
T COG0388 225 DGEVLAEAGEEEEGVLLADIDLAELAEVRRKIPVLKDRRRFDL 267 (274)
T ss_pred CccEEeecCCCCCcEEEEEECHHHHHHHHhhCcchhhcccchh
Confidence 9999999987789999999999999999999998876655444
No 25
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=1.7e-46 Score=327.40 Aligned_cols=255 Identities=27% Similarity=0.447 Sum_probs=215.5
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccc--hHHHhhcCCCCCChhHHHHHHHHHHc
Q 022243 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR--EDFFQRAKPYKDHPTILKMQELAKEL 86 (300)
Q Consensus 10 ~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (300)
|||++|+++ .+|++.|++++.+++++|.++|+|||||||++++||.+.+.. ...... ..+.+..|.+.++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~ 75 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEA-----AEEALEELAAATADL 75 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHH-----HHHHHHHHHHhcccC
Confidence 699999998 799999999999999999999999999999999999764321 111110 123445555555666
Q ss_pred CcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHH
Q 022243 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEA 166 (300)
Q Consensus 87 ~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~ 166 (300)
+++|++|++++.++++||++++| ++|++++.|+|.||++++.+.|..+|.+|+. ..+|+++++|||++||||++||+.
T Consensus 76 ~i~ii~G~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~~fpe~ 153 (261)
T cd07570 76 DIAVVVGLPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYGVFDEKRYFTPGDK-PDVLFFKGLRIGVEICEDLWVPDP 153 (261)
T ss_pred CcEEEEeceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCccccccccCccCCC-CCeEEECCEEEEEEeecccCCCCc
Confidence 99999999888888999999999 6999999999999999888889999999996 689999999999999999999999
Q ss_pred -HHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECC
Q 022243 167 -ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 244 (300)
Q Consensus 167 -~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p 244 (300)
.+.++++|||+|++|++|+.. ......|..+.++||.|| +|++.+|++|... +..|.|.|.|++|
T Consensus 154 ~~r~~~~~ga~ll~~ps~~~~~-----~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~--------~~~~~G~S~ii~p 220 (261)
T cd07570 154 PSAELALAGADLILNLSASPFH-----LGKQDYRRELVSSRSARTGLPYVYVNQVGGQD--------DLVFDGGSFIADN 220 (261)
T ss_pred hHHHHHHcCCcEEEEeCCCccc-----cCcHHHHHHHHHHHHHHhCCcEEEEeCCCCCc--------eEEEECceEEEcC
Confidence 999999999999999997531 123467788899999999 9999999998542 4789999999999
Q ss_pred CCCcccccCCCCCcEEEEEechhhHHhhhccCCCccccChhh
Q 022243 245 TGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPEL 286 (300)
Q Consensus 245 ~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~ 286 (300)
+|+++++++.+ +.+++++|++.++..|..++.+++....+
T Consensus 221 ~G~vl~~~~~~--~~~~~~id~~~~~~~r~~~~~~~~~~~~~ 260 (261)
T cd07570 221 DGELLAEAPRF--EEDLADVDLDRLRSERRRNSSFLDEEAEI 260 (261)
T ss_pred CCCEEEecCcc--eEEEEEEEEecCcccccccCCCccchhhc
Confidence 99999998755 78999999999999999888776654443
No 26
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.1e-45 Score=321.66 Aligned_cols=253 Identities=30% Similarity=0.424 Sum_probs=212.7
Q ss_pred eEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcC
Q 022243 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (300)
Q Consensus 9 ~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (300)
+|||++|++. .+|++.|++++.+++++|.++|+|||||||++++||.+.+.. +.....+.. .++.++.|+++|++++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~-~~~~~~~~~-~~~~~~~l~~~a~~~~ 78 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRA-EIAPFVEPI-PGPTTARFAELAREHD 78 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHH-HhhhhcccC-CCHHHHHHHHHHHHcC
Confidence 5899999999 699999999999999999999999999999999999765421 112222222 2367889999999999
Q ss_pred cEEeeeeeecc--CCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHH
Q 022243 88 VVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPE 165 (300)
Q Consensus 88 v~iv~g~~~~~--~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~ 165 (300)
++|++|.+++. ++++||++++|+++| +++.|+|.|+.. .|..+|.+|+..+.+|+++++|+|++||||++||+
T Consensus 79 i~ii~G~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~----~e~~~~~~g~~~~~v~~~~~~rig~~IC~D~~fpe 153 (258)
T cd07578 79 CYIVVGLPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI----SEPKWAADGDLGHQVFDTEIGRIALLICMDIHFFE 153 (258)
T ss_pred cEEEEecceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc----ccccccCCCCCCceEEECCCccEEEEEeeCCCchH
Confidence 99999988664 468999999999998 789999999753 47788999985578999999999999999999999
Q ss_pred HHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECC
Q 022243 166 AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 244 (300)
Q Consensus 166 ~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p 244 (300)
+++.+..+||++|++|++|... ......| +.||+|| +++|.||++|... +..+.|.|++++|
T Consensus 154 ~~r~~~~~ga~ll~~ps~~~~~-----~~~~~~~----~~rA~en~~~vv~an~~G~~~--------~~~~~G~S~ii~p 216 (258)
T cd07578 154 TARLLALGGADVICHISNWLAE-----RTPAPYW----INRAFENGCYLIESNRWGLER--------GVQFSGGSCIIEP 216 (258)
T ss_pred HHHHHHHcCCCEEEEcCCCCCC-----CCcchHH----HHhhhcCCeEEEEecceeccC--------CcceeeEEEEECC
Confidence 9999999999999999997531 0112344 4799999 9999999999653 3678999999999
Q ss_pred CCCcccccCCCCCcEEEEEechhhHHhhhcc-CCCccccChhh
Q 022243 245 TGEIVAAADDKEEAVLVAQFDLDKLKSKRSS-WGVFRDRRPEL 286 (300)
Q Consensus 245 ~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~-~~~~~~~~~~~ 286 (300)
+|++++..+. +++++++++|++.++.+|.. +++++++|+++
T Consensus 217 ~G~il~~~~~-~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~ 258 (258)
T cd07578 217 DGTIQASIDS-GDGVALGEIDLDRARHRQFPGELVFTARRPEL 258 (258)
T ss_pred CCcEeeccCC-CCceEEEEecchHhhhhhcccchhhhhhccCC
Confidence 9999998864 57999999999999999975 78899998853
No 27
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.2e-45 Score=320.32 Aligned_cols=263 Identities=27% Similarity=0.379 Sum_probs=214.5
Q ss_pred eEEEEEeCCC-C-CCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCcc---CCccc--hHHHhhcCCCCCChhHHHHHH
Q 022243 9 VVVSALQFAC-T-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYF---CQAQR--EDFFQRAKPYKDHPTILKMQE 81 (300)
Q Consensus 9 ~~Ia~~Q~~~-~-~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~---~~~~~--~~~~~~~~~~~~~~~~~~l~~ 81 (300)
||||++|+++ . +|++.|++++.+++++|++.|+|||||||++++||. ..+.. .+....... ..+++++.|++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 79 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAA-LTPDYVALFSE 79 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHH-HHHHHHHHHHH
Confidence 7999999998 3 899999999999999999999999999999998852 22211 111111111 12467899999
Q ss_pred HHHHcCcEEeeee-eeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeecc
Q 022243 82 LAKELGVVMPVSF-FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWD 160 (300)
Q Consensus 82 ~a~~~~v~iv~g~-~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D 160 (300)
+|++++++|++|+ +++.++++||++++++++|.+ +.|+|.||+++. .|..++.+|+. +.+|+++++|+|++||||
T Consensus 80 ~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~-~~v~~~~~~~ig~~IC~D 155 (280)
T cd07574 80 LARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDK-LKVFDTDLGKIGILICYD 155 (280)
T ss_pred HHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCC-ceEEecCCccEEEEEecc
Confidence 9999999999985 456778999999999999987 999999998742 23345789986 789999999999999999
Q ss_pred CCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccce
Q 022243 161 QWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNS 239 (300)
Q Consensus 161 ~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S 239 (300)
++||++.+.++.+|+|+|++|++|+.. ....+|...+++||.|| +|+++||++|..... ..+..+.|.|
T Consensus 156 ~~fpe~~r~l~~~ga~ii~~ps~~~~~------~~~~~~~~~~~arA~en~~~vv~an~~G~~~~~----~~~~~~~G~S 225 (280)
T cd07574 156 SEFPELARALAEAGADLLLVPSCTDTR------AGYWRVRIGAQARALENQCYVVQSGTVGNAPWS----PAVDVNYGQA 225 (280)
T ss_pred cccHHHHHHHHHcCCCEEEECCcCCcc------ccHHHHHHHHHHHHHhhCceEEEeCCCCCCCCc----cccccccccc
Confidence 999999999999999999999986531 23346666789999999 999999999965300 0135788999
Q ss_pred EEECCC------CCcccccCCCCCcEEEEEechhhHHhhhccCC--CccccChhh
Q 022243 240 FIAGPT------GEIVAAADDKEEAVLVAQFDLDKLKSKRSSWG--VFRDRRPEL 286 (300)
Q Consensus 240 ~i~~p~------G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~--~~~~~~~~~ 286 (300)
.|++|. |+++++++.++++++++++|++.++..|..++ .++++|+|+
T Consensus 226 ~i~~P~~~~~~~g~~l~~~~~~~e~~~~a~iD~~~~~~~R~~~~~~~~~~~~~~~ 280 (280)
T cd07574 226 AVYTPCDFGFPEDGILAEGEPNTEGWLIADLDLEALRRLREEGSVRNLRDWREDL 280 (280)
T ss_pred eeecCCCCCCCCCCeEeecCCCCCceEEEecCHHHHHHHhhcCCccCcccCcccC
Confidence 999996 88999988778999999999999999999965 478888764
No 28
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5.4e-44 Score=316.55 Aligned_cols=258 Identities=26% Similarity=0.347 Sum_probs=210.1
Q ss_pred EEEEEeCCC-C----CCHHHHHHHHHHHHHHHHh-----CCCeEEEeccccCCCccCCccch--HHHhhcCCCCCChhHH
Q 022243 10 VVSALQFAC-T----DDVSTNLATAERLVRAAHG-----KGANIILIQELFEGYYFCQAQRE--DFFQRAKPYKDHPTIL 77 (300)
Q Consensus 10 ~Ia~~Q~~~-~----~~~~~n~~~~~~~i~~A~~-----~~~dliVfPE~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~ 77 (300)
+++++|+.. . +|++.|++++.+++++|++ .++|||||||++++||.+.+... .+.+.++.. .++.++
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~-~~~~~~ 80 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDI-PGPETE 80 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccC-CCHHHH
Confidence 567889886 3 8999999999999999987 47999999999999997754321 123444443 357889
Q ss_pred HHHHHHHHcCcEEeeeeeeccC---CceeeEEEEEcCCCCeeeeeeeccCCCCCC-------CCc-ceeecCC-CCCcee
Q 022243 78 KMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG-------YQE-KFYFNPG-DTGFKV 145 (300)
Q Consensus 78 ~l~~~a~~~~v~iv~g~~~~~~---~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~-------~~e-~~~~~~G-~~~~~~ 145 (300)
.|+++|++++++|++|..++.+ +++||++++|+++|++++.|+|+||+.... +.| ..++.+| ...+.+
T Consensus 81 ~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~~~~v 160 (294)
T cd07582 81 ALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDALFPV 160 (294)
T ss_pred HHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCccccccee
Confidence 9999999999999999877653 579999999999999999999999965311 112 1234454 323688
Q ss_pred eecCCccEEEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccc
Q 022243 146 FQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEII 224 (300)
Q Consensus 146 ~~~~~~~ig~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~ 224 (300)
++++++|||++||||++||+..+.++++|||+|++|++|+.. .....|..++++||+|| +|++.||++|....
T Consensus 161 ~~~~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~psa~~~~------~~~~~~~~~~~arA~en~~~vv~aN~~G~~~~ 234 (294)
T cd07582 161 ADTEIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSSSEVPS------VELDPWEIANRARALENLAYVVSANSGGIYGS 234 (294)
T ss_pred ecCCCceEEEEEeecccChHHHHHHHHCCCcEEEEcCCCCCC------cchhhHHHHHHHHHHhcCCEEEEecccccCcc
Confidence 999999999999999999999999999999999999997531 13467888889999999 99999999986531
Q ss_pred cccCCCcceeeccceEEECCCCCcccccCCC-CCcEEEEEechhhHHhhhccCCC
Q 022243 225 ETEHGKSQITFYGNSFIAGPTGEIVAAADDK-EEAVLVAQFDLDKLKSKRSSWGV 278 (300)
Q Consensus 225 ~~~~g~~~~~~~G~S~i~~p~G~~i~~~~~~-~~~~~~~~id~~~~~~~r~~~~~ 278 (300)
+ .....|.|.|+|++|+|+++++++.+ +++++++++|++.++..|..++.
T Consensus 235 ~----~~~~~~~G~S~ivdp~G~vla~~~~~~~e~il~~~id~~~~~~~R~~~~~ 285 (294)
T cd07582 235 P----YPADSFGGGSMIVDYKGRVLAEAGYGPGSMVAGAEIDIEALRRARARPGM 285 (294)
T ss_pred c----ccCceecceeEEECCCCCEEEeCCCCCCCeEEEEEEcHHHHHHHHHhcCc
Confidence 0 01257889999999999999999877 78999999999999999988754
No 29
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=1.1e-44 Score=318.75 Aligned_cols=240 Identities=23% Similarity=0.270 Sum_probs=198.7
Q ss_pred EEEEEeCCC-CCCH-------HHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchH-HHhh-----------c--
Q 022243 10 VVSALQFAC-TDDV-------STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRED-FFQR-----------A-- 67 (300)
Q Consensus 10 ~Ia~~Q~~~-~~~~-------~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~-~~~~-----------~-- 67 (300)
++|+||..+ +.+. +.|++++.+++++|.+.++|||||||++++||...+.... +.+. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (299)
T cd07567 2 IAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLDP 81 (299)
T ss_pred EEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhcccccccccccccccc
Confidence 789999998 5555 9999999999999999999999999999999976542211 1000 0
Q ss_pred CCCCCChhHHHHHHHHHHcCcEEeeeeeecc-----------C-CceeeEEEEEcCCCCeeeeeeeccCCCCCCCCccee
Q 022243 68 KPYKDHPTILKMQELAKELGVVMPVSFFEEA-----------N-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFY 135 (300)
Q Consensus 68 ~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~-----------~-~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~ 135 (300)
......++++.|+++|++++++|++|+.++. + +++||++++|+++|+++++|+|+||+ .|..+
T Consensus 82 ~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~~ 156 (299)
T cd07567 82 DRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPGF 156 (299)
T ss_pred cccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----ccccc
Confidence 0111246789999999999999999987653 2 26999999999999999999999996 37788
Q ss_pred ecCCCCCceeeecCCc-cEEEEeeccCCCHHHHHHHHHc-CCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ce
Q 022243 136 FNPGDTGFKVFQTKFA-KIGVAICWDQWFPEAARAMVLQ-GAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VP 212 (300)
Q Consensus 136 ~~~G~~~~~~~~~~~~-~ig~~IC~D~~~~~~~~~~~~~-gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~ 212 (300)
|.+|...+.+|+++++ |||++||||++|||+++.++.+ |||+|++|++|+.. ....+|..++++||+|| +|
T Consensus 157 ~~~G~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~~~------~~~~~w~~l~~arA~eN~~~ 230 (299)
T cd07567 157 DVPPEPEIVTFDTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWFSE------LPFLTAVQIQQAWAYANGVN 230 (299)
T ss_pred cCCCCCCceEEECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccCCC------CCchhHHHHHHHHHHHcCce
Confidence 9999745789999976 9999999999999999999998 99999999998531 12358999999999999 99
Q ss_pred EEEecCCCCccccccCCCcceeeccceEEECCC-CCcccccCC-CCCcEEEEEechhhHHh
Q 022243 213 LVASNRIGKEIIETEHGKSQITFYGNSFIAGPT-GEIVAAADD-KEEAVLVAQFDLDKLKS 271 (300)
Q Consensus 213 vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~-G~~i~~~~~-~~~~~~~~~id~~~~~~ 271 (300)
|+.||++|.. .+.|.|+|++|+ |++++++.. .++++++++||++..+.
T Consensus 231 vi~~N~~g~~-----------~~~G~S~iv~P~~G~v~a~~~~~~~e~~l~~~id~~~~~~ 280 (299)
T cd07567 231 LLAANYNNPS-----------AGMTGSGIYAGRSGALVYHYDNEPGGKLLVAEVPKLPSRR 280 (299)
T ss_pred EEEecCCCCc-----------CccccceEEcCCCCcEEEEecCCCCceEEEEEccCCcccc
Confidence 9999999842 356999999999 999999864 36789999999986544
No 30
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=8.8e-44 Score=308.67 Aligned_cols=250 Identities=42% Similarity=0.734 Sum_probs=217.7
Q ss_pred EEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcE
Q 022243 11 VSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (300)
Q Consensus 11 Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~ 89 (300)
||++|+++ .+++++|++++.+++++|.++++|||||||++++||...+..... .... ......++.++++|++++++
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~-~~~~-~~~~~~~~~l~~~a~~~~i~ 78 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDL-DLAE-ELDGPTLEALAELAKELGIY 78 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhh-hhcc-cCCchHHHHHHHHHHHhCeE
Confidence 68999999 699999999999999999999999999999999998765421110 0111 12347889999999999999
Q ss_pred EeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHHHHH
Q 022243 90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARA 169 (300)
Q Consensus 90 iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~~~~ 169 (300)
|++|+.+++++++||++++++++|+++..|+|.||++ +.|..++.+|+. ..+|+++++|+|++||+|+++|+..+.
T Consensus 79 ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~-~~~f~~~~~~ig~~IC~d~~~~~~~~~ 154 (253)
T cd07197 79 IVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDE-FPVFDTPGGKIGLLICYDLRFPELARE 154 (253)
T ss_pred EEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCC-CceEEcCCceEEEEEEecCCCcHHHHH
Confidence 9999998888899999999999999999999999987 368889999987 689999999999999999999999999
Q ss_pred HHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCCCCc
Q 022243 170 MVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEI 248 (300)
Q Consensus 170 ~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~~ 248 (300)
+..+|+|+|++|++|+. ....+|..+++.+|.|+ +++++||++|... +..+.|.|.|++|+|++
T Consensus 155 ~~~~g~dli~~ps~~~~-------~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~--------~~~~~G~S~i~~p~G~~ 219 (253)
T cd07197 155 LALKGADIILVPAAWPT-------ARREHWELLLRARAIENGVYVVAANRVGEEG--------GLEFAGGSMIVDPDGEV 219 (253)
T ss_pred HHHCCCcEEEECCcCCC-------cchHHHHHHHHHHHHHhCCeEEEecCCCCCC--------CccccceeEEECCCCce
Confidence 99999999999999653 12578888999999999 9999999999543 47899999999999999
Q ss_pred ccccCCCCCcEEEEEechhhHHhhhccCCCcccc
Q 022243 249 VAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDR 282 (300)
Q Consensus 249 i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~ 282 (300)
+++.+.+ ++++++++|++.++..|..++.+.++
T Consensus 220 ~~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~~~ 252 (253)
T cd07197 220 LAEASEE-EGILVAELDLDELREARKRWSYLRDR 252 (253)
T ss_pred eeecCCC-CcEEEEEeCHHHHHHHHhhCCccccc
Confidence 9999887 89999999999999999887555443
No 31
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-45 Score=296.80 Aligned_cols=264 Identities=30% Similarity=0.487 Sum_probs=227.7
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccC-CCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcC
Q 022243 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (300)
Q Consensus 9 ~~Ia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (300)
.+||++|++.+.|+..|++...++|++|++.||++|.|||.+- -|- ...+-.+.+++ .+.++.+..+++|++++
T Consensus 16 ~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~----n~~esi~Lae~-l~~k~m~~y~elar~~n 90 (295)
T KOG0807|consen 16 KRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQ----NPLESIELAEP-LDGKFMEQYRELARSHN 90 (295)
T ss_pred ceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcC----Ccccceecccc-cChHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999762 221 11122333444 24689999999999999
Q ss_pred cEEeeeee-eccC---CceeeEEEEEcCCCCeeeeeeeccC-----CCCCCCCcceeecCCCCCceeeecCCccEEEEee
Q 022243 88 VVMPVSFF-EEAN---NAHYNSIAIIDADGSDLGLYRKSHI-----PDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 158 (300)
Q Consensus 88 v~iv~g~~-~~~~---~~~yN~~~vi~~~G~i~~~~~K~~l-----~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 158 (300)
|++-+|.. ++.+ .+++|+.++|+.+|+++..|+|.|| |..+.+.|..+..||......++++-||+|+.||
T Consensus 91 IwlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGlaIC 170 (295)
T KOG0807|consen 91 IWLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGLAIC 170 (295)
T ss_pred eeEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccceeee
Confidence 99997754 3332 5899999999999999999999998 4466677888999999866789999999999999
Q ss_pred ccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeecc
Q 022243 159 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYG 237 (300)
Q Consensus 159 ~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G 237 (300)
||++|||++..+.+.||+|+..||+++. ..+..+|+-+.++||+|+ ||||.++++|... ..-..+|
T Consensus 171 YDiRFpE~sl~LR~~gA~iLtyPSAFT~------~TG~AHWEiLlRARAietQCYVvaaaQ~G~Hn-------eKR~SyG 237 (295)
T KOG0807|consen 171 YDIRFPELSLKLRKMGAQILTYPSAFTI------KTGEAHWEILLRARAIETQCYVVAAAQVGKHN-------EKRESYG 237 (295)
T ss_pred eeccCchHHHHHHHcCCcEEeccchhhh------cccHHHHHHHHHHHHhhcceEEEehhhccccc-------chhhccC
Confidence 9999999999999999999999999653 146799999999999999 9999999999753 1234689
Q ss_pred ceEEECCCCCcccccCCCC-CcEEEEEechhhHHhhhccCCCccccChhhHHHH
Q 022243 238 NSFIAGPTGEIVAAADDKE-EAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVL 290 (300)
Q Consensus 238 ~S~i~~p~G~~i~~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~~ 290 (300)
.|+|+||.|.+++++.... .+++.++||++-+...|+.+|.|++||.|+|-..
T Consensus 238 hSMiVDPWGtVva~~se~~~~~l~~AdiDlslld~lr~~mP~~~hRr~dly~~~ 291 (295)
T KOG0807|consen 238 HSMIVDPWGTVVARCSERTGPGLILADIDLSLLDSLRTKMPLFNHRRNDLYTLF 291 (295)
T ss_pred cceEEcchhhhheecCCCCCCceEEEEccHHHHHHHHHhCchhhhcccchhhhh
Confidence 9999999999999998654 8999999999999999999999999999999654
No 32
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=9.9e-44 Score=318.44 Aligned_cols=253 Identities=19% Similarity=0.246 Sum_probs=209.9
Q ss_pred CCcceEEEEEeCCC-----CCCHHHHHHHHHHHHHHHH--hCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHH
Q 022243 5 KRREVVVSALQFAC-----TDDVSTNLATAERLVRAAH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL 77 (300)
Q Consensus 5 ~~~~~~Ia~~Q~~~-----~~~~~~n~~~~~~~i~~A~--~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 77 (300)
.+..|+||++|+++ ..|+..|++++.+.+++|+ ..++|||||||++++||.... .+..+.+..+. ++..+
T Consensus 9 ~~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~--~~~~~~a~~i~-g~~~~ 85 (345)
T PRK13286 9 SNDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDR--QEMYETASTIP-GEETA 85 (345)
T ss_pred CCCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcCh--HHHHHhcccCC-CHHHH
Confidence 34579999999984 3689999999999999987 458999999999999965432 12333444333 47788
Q ss_pred HHHHHHHHcCcEEeeeee-ec----cCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecC-Cc
Q 022243 78 KMQELAKELGVVMPVSFF-EE----ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FA 151 (300)
Q Consensus 78 ~l~~~a~~~~v~iv~g~~-~~----~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~ 151 (300)
.|.++|++++++++++.. ++ .++.+||++++|+++|+++++|+|.|++. +...|.||+. ..+++++ +.
T Consensus 86 ~l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~-----~~e~~~pG~~-~~v~~~~~G~ 159 (345)
T PRK13286 86 IFAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC-----PIEGWYPGDC-TYVSEGPKGL 159 (345)
T ss_pred HHHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc-----hhhceecCCC-CEEEeCCCCc
Confidence 899999999999887765 32 13468999999999999999999999643 3345789986 5788886 45
Q ss_pred cEEEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCC
Q 022243 152 KIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGK 230 (300)
Q Consensus 152 ~ig~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~ 230 (300)
|||++||||.+|||++|.++++|||+|++|++|+. ...++|..+.++||+|| +||+.||++|.+.
T Consensus 160 kiG~lIC~D~~fPE~~R~la~~GAelii~psa~~~-------~~~~~~~~~~rarA~eN~~yVv~aN~~G~~~------- 225 (345)
T PRK13286 160 KISLIICDDGNYPEIWRDCAMKGAELIVRCQGYMY-------PAKEQQVLVAKAMAWANNCYVAVANAAGFDG------- 225 (345)
T ss_pred EEEEEEEecccChHHHHHHHHcCCeEEEEccccCC-------CchHHHHHHHHHHHHHCCCEEEEEecccccC-------
Confidence 99999999999999999999999999999998743 23468888999999999 9999999999543
Q ss_pred cceeeccceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCccc
Q 022243 231 SQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD 281 (300)
Q Consensus 231 ~~~~~~G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~ 281 (300)
...|.|.|+|++|+|++++++..++++++++++|++.++..|..++..++
T Consensus 226 -~~~~~G~S~Ivdp~G~vla~~~~~~e~ii~adld~~~i~~~R~~~~~~n~ 275 (345)
T PRK13286 226 -VYSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSVSQIRDARRNDQSQNH 275 (345)
T ss_pred -CceeeeeEEEECCCCcEEEecCCCCCeEEEEEEeHHHHHHHHHhCCcccc
Confidence 36889999999999999999987778999999999999999998876544
No 33
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=1.1e-43 Score=317.84 Aligned_cols=250 Identities=22% Similarity=0.315 Sum_probs=209.5
Q ss_pred CcceEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHH
Q 022243 6 RREVVVSALQFAC-----TDDVSTNLATAERLVRAAHGK--GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (300)
Q Consensus 6 ~~~~~Ia~~Q~~~-----~~~~~~n~~~~~~~i~~A~~~--~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (300)
..+|+||++|+++ .++++.|++++.+++++|++. ++|||||||++++||...... ..+.+... .++.++.
T Consensus 11 ~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~--~~~~a~~~-~g~~~~~ 87 (333)
T PRK13287 11 IEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWT--TEEFLCTV-DGPEVDA 87 (333)
T ss_pred CCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccc--hhhhcccC-CCHHHHH
Confidence 4579999999996 379999999999999999874 899999999999998654211 11222222 2467899
Q ss_pred HHHHHHHcCcEEeeeeeeccC-C-ceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecC-CccEEE
Q 022243 79 MQELAKELGVVMPVSFFEEAN-N-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGV 155 (300)
Q Consensus 79 l~~~a~~~~v~iv~g~~~~~~-~-~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ig~ 155 (300)
|+++|+++++++++|..++.+ + ++||++++|+++|+++++|+|+|+.. ....|.||+..+++|+++ +.|+|+
T Consensus 88 l~~~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~~~v~~~~~g~kiG~ 162 (333)
T PRK13287 88 FAQACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLGIPVCDGPGGSKLAV 162 (333)
T ss_pred HHHHHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCCCceEECCCCceEEE
Confidence 999999999999998776543 3 39999999999999999999999732 123578997446788886 569999
Q ss_pred EeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCccee
Q 022243 156 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQIT 234 (300)
Q Consensus 156 ~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~ 234 (300)
+||||.+||+++|.++.+|||+|++|++|+. ...+.|....+++|.+| ++++.+|++|.+. ...
T Consensus 163 ~ICyD~~fPe~~R~~a~~GAeill~~s~~~~-------~~~~~w~~~~~arA~en~~~vv~an~~G~~~--------~~~ 227 (333)
T PRK13287 163 CICHDGMFPEMAREAAYKGANVMIRISGYST-------QVREQWILTNRSNAWQNLMYTASVNLAGYDG--------VFY 227 (333)
T ss_pred EEEecccchHHHHHHHHCCCeEEEECCccCC-------cchhHHHHHHHHHHHhCCcEEEEEeccccCC--------Cee
Confidence 9999999999999999999999999999753 23577888889999999 9999999999653 367
Q ss_pred eccceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCC
Q 022243 235 FYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGV 278 (300)
Q Consensus 235 ~~G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~ 278 (300)
+.|.|+|++|+|+++++++.++++++++++|++.++..|..+++
T Consensus 228 ~~G~S~Iidp~G~vl~~~~~~~~~ii~aeid~~~~~~~R~~~~~ 271 (333)
T PRK13287 228 YFGEGQVCNFDGTTLVQGHRNPWEIVTAEVRPDLADEARLGWGL 271 (333)
T ss_pred eeeeeEEECCCCcEEEeCCCCCCeEEEEEEeHHHHHHHHHhcCc
Confidence 88999999999999999988888999999999999999997765
No 34
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=3.7e-42 Score=327.75 Aligned_cols=237 Identities=30% Similarity=0.439 Sum_probs=207.4
Q ss_pred eEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccc--hHHHhhcCCCCCChhHHHHHHHHHH
Q 022243 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR--EDFFQRAKPYKDHPTILKMQELAKE 85 (300)
Q Consensus 9 ~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~a~~ 85 (300)
||||++|+++ .+|++.|++++.+++++|+++|+|||||||++++||.+.+.. ..+.. ...+.+.++|++
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~~--------~~~~~l~~La~~ 72 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFLA--------ACEAALERLAAA 72 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHHH--------HHHHHHHHHHHh
Confidence 7999999998 799999999999999999999999999999999999875521 11111 234566777776
Q ss_pred --cCcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCC
Q 022243 86 --LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWF 163 (300)
Q Consensus 86 --~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~ 163 (300)
+++.|++|.+++.++++||++++|+ +|++++.|+|+||++++.|.|..+|++|+. ..+|+++++|+|++||||++|
T Consensus 73 ~~~~i~ii~G~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~-~~~~~~~g~rigv~IC~D~~~ 150 (540)
T PRK13981 73 TAGGPAVLVGHPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYGVFDEKRYFAPGPE-PGVVELKGVRIGVPICEDIWN 150 (540)
T ss_pred cCCCCEEEEeCcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCCCCcCccccccCCCC-ceEEEECCEEEEEEEehhhcC
Confidence 7999999998877889999999996 899999999999999888889999999986 689999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEE
Q 022243 164 PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIA 242 (300)
Q Consensus 164 ~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~ 242 (300)
|++.+.++.+|||+|++|++|+. .......|..+.+.||.|| +++|+||++|.. ++..|.|.|+|+
T Consensus 151 pe~~r~la~~Gadlil~psa~~~-----~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~--------~~~~f~G~S~i~ 217 (540)
T PRK13981 151 PEPAETLAEAGAELLLVPNASPY-----HRGKPDLREAVLRARVRETGLPLVYLNQVGGQ--------DELVFDGASFVL 217 (540)
T ss_pred CcHHHHHHHCCCcEEEEcCCCcc-----cCCcHHHHHHHHHHHHHHhCCeEEEEecccCC--------CceEEeCceEEE
Confidence 99999999999999999999743 1123467778899999999 999999999943 357899999999
Q ss_pred CCCCCcccccCCCCCcEEEEEechhh
Q 022243 243 GPTGEIVAAADDKEEAVLVAQFDLDK 268 (300)
Q Consensus 243 ~p~G~~i~~~~~~~~~~~~~~id~~~ 268 (300)
+|+|+++++++.++++++++++|++.
T Consensus 218 dp~G~il~~~~~~~e~~l~~did~~~ 243 (540)
T PRK13981 218 NADGELAARLPAFEEQIAVVDFDRGE 243 (540)
T ss_pred CCCCCEeeecCCCCCcEEEEEEeecC
Confidence 99999999999888999999999964
No 35
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=6.3e-42 Score=332.00 Aligned_cols=258 Identities=25% Similarity=0.380 Sum_probs=215.8
Q ss_pred cceEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccc--hHHHhhcCCCCCChhHHHHHHHH
Q 022243 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR--EDFFQRAKPYKDHPTILKMQELA 83 (300)
Q Consensus 7 ~~~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~a 83 (300)
+.||||++|+++ .+|++.|++++.+++++|+++|||||||||++++||.+.+.. ..+.+.. .+.++.|.+.|
T Consensus 11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~~-----~~~l~~L~~~a 85 (679)
T PRK02628 11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDAV-----EDALATLVEAS 85 (679)
T ss_pred CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHhh-----HHHHHHHHHHH
Confidence 569999999999 699999999999999999999999999999999999887632 2222211 26778899999
Q ss_pred HHcCcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCc----------------eeee
Q 022243 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF----------------KVFQ 147 (300)
Q Consensus 84 ~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~----------------~~~~ 147 (300)
+++++.|++|++++.++++||++++|+ +|++++.|+|+|||+++.|.|.++|+||+... .+|+
T Consensus 86 ~~~~i~ivvG~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~~vf~ 164 (679)
T PRK02628 86 ADLDPLLVVGAPLRVRHRLYNCAVVIH-RGRILGVVPKSYLPNYREFYEKRWFAPGDGARGETIRLCGQEVPFGTDLLFE 164 (679)
T ss_pred hhcCEEEEEeeEEEECCEEEEEEEEEc-CCEEEEEeccccCCCCCcccccccccCCCCCCCceEeecCeeeccCCceeEE
Confidence 999999999988777789999999996 89999999999999988889999999998511 2465
Q ss_pred c---CCccEEEEeeccCCCHHH-HHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecC-CCC
Q 022243 148 T---KFAKIGVAICWDQWFPEA-ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNR-IGK 221 (300)
Q Consensus 148 ~---~~~~ig~~IC~D~~~~~~-~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~-~G~ 221 (300)
+ ++++||++||||+|||+. .+.++++|||+|++|++|+.. ......|..+.+.+|.++ +++|++|+ .|+
T Consensus 165 ~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~-----~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~ 239 (679)
T PRK02628 165 AEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNIT-----VGKADYRRLLVASQSARCLAAYVYAAAGVGE 239 (679)
T ss_pred ecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcc-----cCcHHHHHHHHHHHHHHhCcEEEEEeccccc
Confidence 5 689999999999999997 588999999999999998641 123345557778888888 77777775 553
Q ss_pred ccccccCCCcceeeccceEEECCCCCcccccCCC--CCcEEEEEechhhHHhhhccCCCccccC
Q 022243 222 EIIETEHGKSQITFYGNSFIAGPTGEIVAAADDK--EEAVLVAQFDLDKLKSKRSSWGVFRDRR 283 (300)
Q Consensus 222 ~~~~~~~g~~~~~~~G~S~i~~p~G~~i~~~~~~--~~~~~~~~id~~~~~~~r~~~~~~~~~~ 283 (300)
. .++..|+|.|.|++ +|+++++++.+ +++++++++|++.++..|..++++++++
T Consensus 240 ~-------~~~~vf~G~S~I~~-~G~vla~a~~f~~~e~l~~adiDl~~v~~~R~~~~~~~d~~ 295 (679)
T PRK02628 240 S-------TTDLAWDGQTLIYE-NGELLAESERFPREEQLIVADVDLERLRQERLRNGSFDDNA 295 (679)
T ss_pred C-------CCCeEEeCeEEEEc-CCeEEEecCCCCCCCcEEEEEEcHHHHHHHHhhcCCcccch
Confidence 2 23488999999998 99999998754 3569999999999999999989998877
No 36
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=1.3e-41 Score=297.57 Aligned_cols=237 Identities=23% Similarity=0.267 Sum_probs=199.7
Q ss_pred eEEEEEeCCC-CC------CHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHH
Q 022243 9 VVVSALQFAC-TD------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (300)
Q Consensus 9 ~~Ia~~Q~~~-~~------~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (300)
+|||++|+++ .+ |.+.|++++.+++++|+++++|||||||++++||.. ...+.++.+++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~--------------~~~~~~~~l~~ 66 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQ--------------RDPDALARLAR 66 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCcccc--------------cCHHHHHHHHH
Confidence 5899999998 43 789999999999999999999999999999999741 12467899999
Q ss_pred HHHHcCcEEeeeeeeccC--CceeeEEEEEcCCCCeeeeeeeccCCCCCCC---------------CcceeecCCCCCce
Q 022243 82 LAKELGVVMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGY---------------QEKFYFNPGDTGFK 144 (300)
Q Consensus 82 ~a~~~~v~iv~g~~~~~~--~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~---------------~e~~~~~~G~~~~~ 144 (300)
+|++++++|++|+.++.+ +++||++++|+++|+++++|+|.||+++.++ .|..+|.+|+. ..
T Consensus 67 ~ak~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~-~~ 145 (270)
T cd07571 67 AARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTG-PQ 145 (270)
T ss_pred HHHhcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCC-CC
Confidence 999999999999887665 4899999999999999999999999886543 35678999986 78
Q ss_pred eeecCC-ccEEEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCc
Q 022243 145 VFQTKF-AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKE 222 (300)
Q Consensus 145 ~~~~~~-~~ig~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~ 222 (300)
+|++++ +|+|++||||.+||+.++.++.+|||+|++|+++.... ......+|..++++||+|| ++||+||+.|
T Consensus 146 vf~~~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps~~~~~~---~~~~~~~~~~~~~arA~en~~~vv~~n~~G-- 220 (270)
T cd07571 146 PLLLGGGVRVGPLICYESIFPELVRDAVRQGADLLVNITNDAWFG---DSAGPYQHLAMARLRAIETGRPLVRAANTG-- 220 (270)
T ss_pred ccccCCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcCcccccC---CCcchHHHHHHHHHHHHHhCCCEEEEcCCe--
Confidence 999999 99999999999999999999999999999999842110 0112345666788999999 9999999765
Q ss_pred cccccCCCcceeeccceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCccccC
Q 022243 223 IIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 283 (300)
Q Consensus 223 ~~~~~~g~~~~~~~G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~ 283 (300)
.|.|++|+|+++++++.++++++++++|++. ..+.+.-|+|..
T Consensus 221 ---------------~S~ivdp~G~ii~~~~~~~e~~~~~~i~~~~---~~t~y~~~g~~~ 263 (270)
T cd07571 221 ---------------ISAVIDPDGRIVARLPLFEAGVLVAEVPLRT---GLTPYVRWGDWP 263 (270)
T ss_pred ---------------eeEEECCCCcEEeecCCCcceEEEEEeccCC---CCCcceecChHH
Confidence 8999999999999998888999999999876 234444455543
No 37
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=9e-41 Score=323.22 Aligned_cols=258 Identities=18% Similarity=0.208 Sum_probs=203.1
Q ss_pred ceEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHc
Q 022243 8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (300)
Q Consensus 8 ~~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (300)
.||||++|+++ .+|++.|++++.+.+++|+++|||||||||++++||.+.+. +.+........+.+..|.+.++++
T Consensus 3 ~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl---~~~~~~~~~~~~~L~~La~~a~~~ 79 (700)
T PLN02339 3 LLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDH---FLELDTVTHSWECLAEILVGDLTD 79 (700)
T ss_pred eEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHH---hhChhHHHHHHHHHHHHHhhcccC
Confidence 69999999999 68999999999999999999999999999999999988653 111110000123444555555578
Q ss_pred CcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCC------------------------
Q 022243 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG------------------------ 142 (300)
Q Consensus 87 ~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~------------------------ 142 (300)
++.|++|++...++++||+++++ .+|++++.|+|.||++++.|.|.++|+||...
T Consensus 80 ~i~vvvG~p~~~~~~lYN~a~vi-~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpfg 158 (700)
T PLN02339 80 GILCDIGMPVIHGGVRYNCRVFC-LNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFG 158 (700)
T ss_pred CeEEEEeeeEEECCeEEEEEEEE-eCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceeccC
Confidence 99999999877778899999999 58999999999999999889999999998521
Q ss_pred ceeeecCCccEEEEeeccCCCHHHHHH-HHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhh-hhhhccceEEEecCCC
Q 022243 143 FKVFQTKFAKIGVAICWDQWFPEAARA-MVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQ-GHAGANVPLVASNRIG 220 (300)
Q Consensus 143 ~~~~~~~~~~ig~~IC~D~~~~~~~~~-~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~-~~A~e~~~vv~~n~~G 220 (300)
..+|++++.+||+.||||+|||+..+. +++.|||+|++|++++. +..+...+.++.. ..+..++.+|+||++|
T Consensus 159 ~~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~-----~~gK~~~R~rai~n~sa~~~~~yvyaN~~G 233 (700)
T PLN02339 159 DGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHH-----QLRKLNTRLDLIRSATHKCGGVYLYANQRG 233 (700)
T ss_pred cceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChh-----hcCCHHHHHHHHHHHHHHhCCcEEEEcCCc
Confidence 124556678999999999999998884 99999999999998532 2223344334444 4445554447999998
Q ss_pred CccccccCCCcceeeccceEEECCCCCcccccCCC---CCcEEEEEechhhHHhhhccCCCcccc
Q 022243 221 KEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDK---EEAVLVAQFDLDKLKSKRSSWGVFRDR 282 (300)
Q Consensus 221 ~~~~~~~~g~~~~~~~G~S~i~~p~G~~i~~~~~~---~~~~~~~~id~~~~~~~r~~~~~~~~~ 282 (300)
++. +...|.|.|.|. |+|+++++++.+ ++.+++++||++.++..|...+.+++.
T Consensus 234 e~~-------~~lvf~G~S~I~-~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~~ 290 (700)
T PLN02339 234 CDG-------GRLYYDGCACIV-VNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQ 290 (700)
T ss_pred cCC-------CceEEcCceEEe-CCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhhh
Confidence 653 247889999996 799999998865 457999999999999999888887664
No 38
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-39 Score=273.46 Aligned_cols=272 Identities=30% Similarity=0.441 Sum_probs=231.7
Q ss_pred CcceEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCC----CChhHHHHH
Q 022243 6 RREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYK----DHPTILKMQ 80 (300)
Q Consensus 6 ~~~~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~l~ 80 (300)
..++++|++|... ..+..+|+..++..+++|.+.++++|||||.++.||...+. +....+.+. .++++..++
T Consensus 11 ~~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~s---f~py~E~i~~~~~~~ps~~~ls 87 (298)
T KOG0806|consen 11 LPNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTES---FYPYLEDIPDPGCRDPSRQGLS 87 (298)
T ss_pred ccccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhcccccccccc---ccchhhhCCCcccCChhHHHhH
Confidence 3578999999999 66999999999999999999999999999999999987422 333333333 358899999
Q ss_pred HHHHHcCcEEeeeeeecc--CCceeeEEEEEcCCCCeeeeeeeccCCCC--CC---CCcceeecCCCCCceeeecCCccE
Q 022243 81 ELAKELGVVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDG--PG---YQEKFYFNPGDTGFKVFQTKFAKI 153 (300)
Q Consensus 81 ~~a~~~~v~iv~g~~~~~--~~~~yN~~~vi~~~G~i~~~~~K~~l~~~--~~---~~e~~~~~~G~~~~~~~~~~~~~i 153 (300)
++|++++|+++.|+++.. +++.||++.+++++|+.+..|+|.||+.. +. |.|...|.||.. +.++++..+||
T Consensus 88 ~va~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~-f~~~~~~~gkf 166 (298)
T KOG0806|consen 88 EVAERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQ-FTVVDTSYGKF 166 (298)
T ss_pred HHHhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcC-CCcccCCCCce
Confidence 999999999999987554 47999999999999999999999999774 22 567788999997 78888999999
Q ss_pred EEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcc
Q 022243 154 GVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQ 232 (300)
Q Consensus 154 g~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~ 232 (300)
|++||||++|+|+++.++++||++|+.|++|... .-....-+|.-++++||..| .+++.++..+... ..
T Consensus 167 Gi~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~~~---~l~~~~~hw~~~~~~~a~~n~~~v~~~s~~~~~s-------~~ 236 (298)
T KOG0806|consen 167 GIFICFDIRFYDPAMILVKDGADLIVYPTAWNNE---LLSAVPLHWALLMRARANDNAANVHAPSPARTGS-------GI 236 (298)
T ss_pred EEEEEecccccchHHHHHHcCCcEEEecchHhhh---cccccchHHHHHHhCCcccceeeeeccCcCcCCc-------ee
Confidence 9999999999999999999999999999998521 00123578999999999999 9999999877432 23
Q ss_pred eeecc-ceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCccccChhhHHHHHh
Q 022243 233 ITFYG-NSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 292 (300)
Q Consensus 233 ~~~~G-~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~~~~ 292 (300)
+...| .|.+.+|.|++++..... ++++.+++|+..+++.|+.++.++++|+++|...+.
T Consensus 237 y~~~gshs~~~~p~gkvl~a~~~~-~e~~~a~~d~~~~~~~rq~~~~~~~r~~d~y~~~~~ 296 (298)
T KOG0806|consen 237 YAPRGSHSIMVNPTGKVLAAAVEK-EEIIYADVDPSAIASRRQGLPVFRQRRLDLYSLDLF 296 (298)
T ss_pred eecCCcceeecCCcceEeeeccCC-CccccccCCHHHHHHHhcccchhhccchhhhhhhcc
Confidence 67778 999999999999888765 449999999999999999999999999999987654
No 39
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=8.9e-38 Score=275.40 Aligned_cols=225 Identities=24% Similarity=0.313 Sum_probs=168.0
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHh----CCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHH
Q 022243 10 VVSALQFAC-TDDVSTNLATAERLVRAAHG----KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (300)
Q Consensus 10 ~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~----~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (300)
|||++|+++ .+|++.|++++.+++++|.+ .++|||||||++++||...+.. +....++....++..+.++++|+
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~-~~~~~ae~~~~g~~~~~l~~lAk 79 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLE-HIKPYLEPTTSGPSFEWAREVAK 79 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHH-HHHHHHHhcCCCHHHHHHHHHHH
Confidence 699999998 58999999999999999988 8999999999999999764321 11122222223577889999999
Q ss_pred HcCcEEeeeeeeccC---CceeeEEEEEcCCCCeeeeeeeccCCCCCC---CCcc-eeec------CCCCCc-eeeecCC
Q 022243 85 ELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG---YQEK-FYFN------PGDTGF-KVFQTKF 150 (300)
Q Consensus 85 ~~~v~iv~g~~~~~~---~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~---~~e~-~~~~------~G~~~~-~~~~~~~ 150 (300)
+++++|++|++++.+ +++||++++|+++|+++++|+|+||++... +.|. .++. +|+... .++.+.+
T Consensus 80 ~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~~~e~~~~~~~~~~~~~G~~~~~~~~~~~~ 159 (295)
T cd07566 80 KFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWGCEENPGGFQTFPLPFAKDDDFDGGSVDVT 159 (295)
T ss_pred hcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccccCCCCCccccccccccccccccccccCCc
Confidence 999999999887654 479999999999999999999999986421 1122 1222 676422 2233358
Q ss_pred ccEEEEeeccCC---C--H----HHHHHHHHcCCcEEEeeccCCCCCCC---------CCCCcHHHHHHHh-hhhh-hcc
Q 022243 151 AKIGVAICWDQW---F--P----EAARAMVLQGAEILFYPTAIGSEPQD---------DGLDSRDHWRRVM-QGHA-GAN 210 (300)
Q Consensus 151 ~~ig~~IC~D~~---~--~----~~~~~~~~~gadlii~ps~~~~~~~~---------~~~~~~~~~~~~~-~~~A-~e~ 210 (300)
+|||++||||++ | | |+++.++++|||||++|++|+....+ .|......|...+ ++|| .||
T Consensus 160 ~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~a~~eN 239 (295)
T cd07566 160 LKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPLRAEPLE 239 (295)
T ss_pred ceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhcccccCCCC
Confidence 899999999995 7 5 99999999999999999999752111 0111123344333 3344 499
Q ss_pred -ceEEEecCCCCccccccCCCcceeeccceEEEC
Q 022243 211 -VPLVASNRIGKEIIETEHGKSQITFYGNSFIAG 243 (300)
Q Consensus 211 -~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~ 243 (300)
+||+.||++|.+. ++.|.|.|+|+.
T Consensus 240 ~~~vv~~Nr~G~~~--------~~~f~G~S~i~~ 265 (295)
T cd07566 240 GTQVVFCNRIGTEN--------DTLYAGSSAVIG 265 (295)
T ss_pred ceEEEEEeccCccC--------CceecCccceee
Confidence 9999999999764 478999999985
No 40
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-36 Score=244.30 Aligned_cols=278 Identities=26% Similarity=0.422 Sum_probs=235.7
Q ss_pred CcceEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCC------------ccchHHHhh---cCC
Q 022243 6 RREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ------------AQREDFFQR---AKP 69 (300)
Q Consensus 6 ~~~~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~------------~~~~~~~~~---~~~ 69 (300)
....+|+++|... ..|....++++.+.+.+|+++|+.||||||.++.||+-. ..+.++... +-.
T Consensus 15 ~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AIe 94 (337)
T KOG0805|consen 15 SSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAIE 94 (337)
T ss_pred ccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhhc
Confidence 3468999999998 789999999999999999999999999999999998442 123344332 222
Q ss_pred CCCChhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCC-CCceeeec
Q 022243 70 YKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGD-TGFKVFQT 148 (300)
Q Consensus 70 ~~~~~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~-~~~~~~~~ 148 (300)
.. .+-.+.|..+|+++++++++|..++++..+|=++++|+|+|..+++|+|..++. -|+-.|..|+ +..++|++
T Consensus 95 v~-gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKlmPTa----lERciWGqGDGSTiPV~dT 169 (337)
T KOG0805|consen 95 VP-GPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKLMPTA----LERCIWGQGDGSTIPVYDT 169 (337)
T ss_pred CC-ChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCccccccccccccch----hhheeeccCCCcccceeec
Confidence 22 466788999999999999999999999999999999999999999999997554 4766666554 24799999
Q ss_pred CCccEEEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccc-
Q 022243 149 KFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIET- 226 (300)
Q Consensus 149 ~~~~ig~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~- 226 (300)
+.++||-+||||-+.|-....+..+|++|.+.|+. +....|+..++..|.|- |+|+.+++--......
T Consensus 170 ~iGKIG~AICWEN~MPl~R~alY~KgieIycAPT~----------D~r~~w~~sM~~IAlEG~cFvlSA~QF~k~~d~p~ 239 (337)
T KOG0805|consen 170 PIGKIGAAICWENRMPLYRTALYAKGIEIYCAPTA----------DGRKEWQSSMLHIALEGGCFVLSACQFCKRKDFPD 239 (337)
T ss_pred ccchhceeeecccccHHHHHHHHhcCcEEEeccCC----------CCcHHHHHhhhheeecCceEEEEhhhhcccccCCC
Confidence 99999999999999999988888999999999998 56789999999999999 9999999764433322
Q ss_pred -----------cCCCcceeeccceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCccc-cChhhHHHHHhcc
Q 022243 227 -----------EHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD-RRPELYKVLLTLD 294 (300)
Q Consensus 227 -----------~~g~~~~~~~G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~ 294 (300)
.++.+.....|+|.|++|-|.+++......|+++.+++|++.++..|-.+++.+| .|||+|++..+++
T Consensus 240 ~peyl~~~~~~~k~pD~vv~~GGSviI~PlG~VlagP~~~~EgL~tadldl~dIA~ak~d~DvVGHYsRpDVFqLtVnE~ 319 (337)
T KOG0805|consen 240 HPDYLFTDWYDDKEPDSVVSQGGSVIISPLGQVLAGPNFESEGLITADLDLGDIARAKLDFDVVGHYSRPDVFQLTVNEH 319 (337)
T ss_pred CchhhcccchhccCCCcceecCCcEEEccccceecCCCcCccceEEEeccchhhhhhccccccccccCCCceEEEEeccC
Confidence 2344557788999999999999999988889999999999999999988877766 8999999999988
Q ss_pred CCCC
Q 022243 295 GSNP 298 (300)
Q Consensus 295 ~~~~ 298 (300)
.++.
T Consensus 320 ~~~~ 323 (337)
T KOG0805|consen 320 PRKP 323 (337)
T ss_pred CCCc
Confidence 8764
No 41
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=100.00 E-value=3.5e-35 Score=278.07 Aligned_cols=223 Identities=23% Similarity=0.243 Sum_probs=183.1
Q ss_pred cceEEEEEeCCCC-------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHH
Q 022243 7 REVVVSALQFACT-------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM 79 (300)
Q Consensus 7 ~~~~Ia~~Q~~~~-------~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (300)
+++|||++|+++. ++.++|++++.++++++ ++++|+|||||++++++. .+ ...++.+.+
T Consensus 218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~-~~------------~~~~~~~~l 283 (505)
T PRK00302 218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLL-ED------------LPQAFLKAL 283 (505)
T ss_pred CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccccccc-cc------------ccHHHHHHH
Confidence 4799999999984 35678999999998844 568999999999987652 11 012466789
Q ss_pred HHHHHHcCcEEeeeeeeccC---C-ceeeEEEEEcCCCCeeeeeeeccCCCCCCCCc---------------ceeecCCC
Q 022243 80 QELAKELGVVMPVSFFEEAN---N-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNPGD 140 (300)
Q Consensus 80 ~~~a~~~~v~iv~g~~~~~~---~-~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e---------------~~~~~~G~ 140 (300)
.++|+++++.+++|..++.+ + ++||+++++++ |+++.+|+|+||.++++|-. ...|.+|+
T Consensus 284 ~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~ 362 (505)
T PRK00302 284 DDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGP 362 (505)
T ss_pred HHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCC
Confidence 99999999999999875432 3 69999999988 88899999999998766421 12578998
Q ss_pred CCceeeecCCccEEEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCc-H--HHHHHHhhhhhhcc-ceEEEe
Q 022243 141 TGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDS-R--DHWRRVMQGHAGAN-VPLVAS 216 (300)
Q Consensus 141 ~~~~~~~~~~~~ig~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~-~--~~~~~~~~~~A~e~-~~vv~~ 216 (300)
....+++++++|+|++||||..||+..+.+..+|+|++++|++ +.|+.. . .++..+.+.||+|| +++|+|
T Consensus 363 ~~~~v~~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~sn------d~Wf~~~~~~~qh~~~~~~RAiEng~~vvra 436 (505)
T PRK00302 363 YVQPPLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNISN------DAWFGDSIGPYQHFQMARMRALELGRPLIRA 436 (505)
T ss_pred CCCCCcccCCceEEEEEeehhcChHHHHhhccCCCCEEEEccc------hhhcCCCCchHHHHHHHHHHHHHhCCceEEe
Confidence 4468999999999999999999999999999999999999999 223322 2 24445678899999 999999
Q ss_pred cCCCCccccccCCCcceeeccceEEECCCCCcccccCCCCCcEEEEEechh
Q 022243 217 NRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLD 267 (300)
Q Consensus 217 n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~ 267 (300)
++.| .|+++||+|+++++.+.++++++++++++.
T Consensus 437 ~n~G-----------------~Saiidp~G~i~~~~~~~~~~~l~~~i~~~ 470 (505)
T PRK00302 437 TNTG-----------------ITAVIDPLGRIIAQLPQFTEGVLDGTVPPT 470 (505)
T ss_pred cCce-----------------eeEEECCCCCEeeecCCCceeEEEEEeccC
Confidence 9765 899999999999999988999999999985
No 42
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=100.00 E-value=1.7e-34 Score=265.44 Aligned_cols=205 Identities=20% Similarity=0.226 Sum_probs=169.9
Q ss_pred CcceEEEEEeCCCCC-------CHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHH
Q 022243 6 RREVVVSALQFACTD-------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (300)
Q Consensus 6 ~~~~~Ia~~Q~~~~~-------~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (300)
.+++|||++|+++.. +.++|++++.+++++|.+ ++|+|||||+++++|.... .....+.
T Consensus 157 ~~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~-------------~~~~~~~ 222 (391)
T TIGR00546 157 GPTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENS-------------PQKLADR 222 (391)
T ss_pred CCcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhC-------------cHHHHHH
Confidence 357999999999843 468899999999998876 8999999999999863211 1135678
Q ss_pred HHHHHHHcCcEEeeeeeeccCC---ceeeEEEEEcCCCCeeeeeeeccCCCCCCCCc----------------ceeecCC
Q 022243 79 MQELAKELGVVMPVSFFEEANN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE----------------KFYFNPG 139 (300)
Q Consensus 79 l~~~a~~~~v~iv~g~~~~~~~---~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e----------------~~~~~~G 139 (300)
++++|+++++.+++|..+..++ ++||++++++++|+++.+|+|+||.+++++-. ...|++|
T Consensus 223 l~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G 302 (391)
T TIGR00546 223 LKLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRG 302 (391)
T ss_pred HHHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCC
Confidence 9999999999999998755432 79999999999999999999999988765421 1367889
Q ss_pred CCCceeeecCCccEEEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCc---HHHHHHHhhhhhhcc-ceEEE
Q 022243 140 DTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDS---RDHWRRVMQGHAGAN-VPLVA 215 (300)
Q Consensus 140 ~~~~~~~~~~~~~ig~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~---~~~~~~~~~~~A~e~-~~vv~ 215 (300)
++ ..+++++++|+|++||||..||+..+.++++|+|++++|++. .|+.. ..++..+.+.||+|| +++++
T Consensus 303 ~~-~~~~~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~snd------~wf~~s~~~~qh~~~~~~RAiEn~~~vvr 375 (391)
T TIGR00546 303 PG-PQVLKLPGGKIAPLICYESIFPDLVRASARQGAELLVNLTND------AWFGDSSGPWQHFALARFRAIENGRPLVR 375 (391)
T ss_pred CC-CCCCcCCCceeeeeEEeehhchHHHHhhccCCCCEEEEecch------hhcCCCCChHHHHHHHHHHHHHhCCcEEE
Confidence 86 689999999999999999999999999999999999999993 24333 234456778999999 99999
Q ss_pred ecCCCCccccccCCCcceeeccceEEECCCCCc
Q 022243 216 SNRIGKEIIETEHGKSQITFYGNSFIAGPTGEI 248 (300)
Q Consensus 216 ~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~~ 248 (300)
||++| .|+++||+|++
T Consensus 376 a~n~G-----------------~S~vidp~G~i 391 (391)
T TIGR00546 376 ATNTG-----------------ISAVIDPRGRT 391 (391)
T ss_pred ecCCc-----------------eeEEECCCCCC
Confidence 99876 99999999975
No 43
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=100.00 E-value=1.2e-33 Score=234.00 Aligned_cols=173 Identities=36% Similarity=0.574 Sum_probs=148.2
Q ss_pred EEEEEeCCC---CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCcc----CCccchHHHhhcCCCCCChhHHHHHHH
Q 022243 10 VVSALQFAC---TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYF----CQAQREDFFQRAKPYKDHPTILKMQEL 82 (300)
Q Consensus 10 ~Ia~~Q~~~---~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (300)
|||++|+++ ..+.+.|++++.+++++|.++++|||||||++++||. +.+...+......... +++++.+.++
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 79 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLD-GPYLERLAEL 79 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHST-SHHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccc-cHHHHHHHHH
Confidence 799999994 6899999999999999999999999999999999982 2332333333333322 5889999999
Q ss_pred HHHcCcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCC-cceeecCCCCCceeeecC-----CccEEEE
Q 022243 83 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-EKFYFNPGDTGFKVFQTK-----FAKIGVA 156 (300)
Q Consensus 83 a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~-e~~~~~~G~~~~~~~~~~-----~~~ig~~ 156 (300)
|+++++++++|+++++++++||++++++++|+++++|+|.||++++.+. |+.++.+|.....+++++ ++|+|++
T Consensus 80 a~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~~~~~~~~~~~~g~~ig~~ 159 (186)
T PF00795_consen 80 AKENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPFPVFETPVFDFGGGRIGVL 159 (186)
T ss_dssp HHHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSESEEEEETETEETTEEEEEE
T ss_pred HHhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeeccceeeeeecceeeeccceEEEE
Confidence 9999999999999888899999999999999999999999999999888 888899985445666664 7999999
Q ss_pred eeccCCCHHHHHHHHHcCCcEEEeecc
Q 022243 157 ICWDQWFPEAARAMVLQGAEILFYPTA 183 (300)
Q Consensus 157 IC~D~~~~~~~~~~~~~gadlii~ps~ 183 (300)
||||.+||++.+.+..+|||+|++||+
T Consensus 160 ICyd~~fp~~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 160 ICYDLRFPELVRELAKQGADILINPSA 186 (186)
T ss_dssp EGGGGGSHHHHHHHHHTTESEEEEEE-
T ss_pred EEcccCChHHHHHHHHCCCCEEEeCCC
Confidence 999999999999999999999999986
No 44
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.9e-29 Score=207.68 Aligned_cols=279 Identities=30% Similarity=0.469 Sum_probs=235.3
Q ss_pred ceEEEEEeCCC--C------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCc-cCCccchHHHhhcCCCCCChhHHH
Q 022243 8 EVVVSALQFAC--T------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYY-FCQAQREDFFQRAKPYKDHPTILK 78 (300)
Q Consensus 8 ~~~Ia~~Q~~~--~------~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (300)
-++|+++|-.+ + ......-.++..+|+.|...|+++|.|-|....+| +|...+..+.+.+++....+..+.
T Consensus 73 ~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~f 152 (387)
T KOG0808|consen 73 VVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTKF 152 (387)
T ss_pred EEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHHH
Confidence 47999999887 1 23455556788889989999999999999987776 555555557777888777888999
Q ss_pred HHHHHHHcCcEEeeeeeecc---CCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEE
Q 022243 79 MQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155 (300)
Q Consensus 79 l~~~a~~~~v~iv~g~~~~~---~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~ 155 (300)
++++|+++++.|+....+++ ++-++|++++|+.+|.++++++|.|+|.-+.|.|..||..|+-+-++|++.+|||++
T Consensus 153 lqklakkhdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lghpvfet~fgriav 232 (387)
T KOG0808|consen 153 LQKLAKKHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLGHPVFETVFGRIAV 232 (387)
T ss_pred HHHHHhhCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCCCceeeeecceEEE
Confidence 99999999999999887765 567999999999999999999999999999999999999998767999999999999
Q ss_pred EeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCcccccc----CCC
Q 022243 156 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETE----HGK 230 (300)
Q Consensus 156 ~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~----~g~ 230 (300)
-|||--.+|.-+..+..+||+||++||+.-. -.+...|-.-.+..|+.| +++...|++|.+.-.-+ .|+
T Consensus 233 nicygrhhplnwlmy~lngaeiifnpsatvg------alseplwpiearnaaianh~ft~~inrvgtevfpneftsgdgk 306 (387)
T KOG0808|consen 233 NICYGRHHPLNWLMYGLNGAEIIFNPSATVG------ALSEPLWPIEARNAAIANHYFTGSINRVGTEVFPNEFTSGDGK 306 (387)
T ss_pred EeeccCCCchhhhhhhccCceEEECCccccc------cccCccCchhhhhhhhhhceEEEeecccccccCCCcccCCCCC
Confidence 9999999998888889999999999999421 134567777788899999 99999999997642111 122
Q ss_pred c----ceeeccceEEECCCCCcccccCCCCCcEEEEEechhhHHhhhccCCCccccChhhHHHHHh
Q 022243 231 S----QITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 292 (300)
Q Consensus 231 ~----~~~~~G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~~~~ 292 (300)
. -=.|+|.|-+..|++...-.+.+..++++++++|++..++.+-.|++--..|-++|..++.
T Consensus 307 pah~dfghfygssy~aapd~srtp~lsr~rdgllia~ldlnlcrq~kd~wgfrmt~ryemya~~la 372 (387)
T KOG0808|consen 307 PAHNDFGHFYGSSYFAAPDASRTPSLSRYRDGLLIADLDLNLCRQYKDKWGFRMTARYEMYADLLA 372 (387)
T ss_pred cccccccccccceeeecCCCCCCccccccccceEEeecchHHHHHhhhhhcceehhhHHHHHHHHH
Confidence 1 1258999999999999988888889999999999999999999998877788899988775
No 45
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.97 E-value=1.6e-29 Score=232.42 Aligned_cols=193 Identities=15% Similarity=0.122 Sum_probs=154.6
Q ss_pred eEEEEEeCCCCCC-------HHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHH
Q 022243 9 VVVSALQFACTDD-------VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (300)
Q Consensus 9 ~~Ia~~Q~~~~~~-------~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (300)
.+|+++|+|+.++ .+++++++.+++++|.+.++|+|||||++++.+... .+...+.+++
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~--------------~~~~~~~l~~ 260 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNN--------------SPILLDKLKE 260 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhh--------------CHHHHHHHHH
Confidence 4999999998533 367889999999988888999999999998764211 1235566666
Q ss_pred HHHHcCcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCC----------------CcceeecCCCCCcee
Q 022243 82 LAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY----------------QEKFYFNPGDTGFKV 145 (300)
Q Consensus 82 ~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~----------------~e~~~~~~G~~~~~~ 145 (300)
.+ .++.+++|....+++++||++++++ +|+ +..|+|+||++++++ .|...|++|+. ..+
T Consensus 261 ~~--~~~~ii~G~~~~~~~~~yNS~~vi~-~G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~-~~~ 335 (418)
T PRK12291 261 LS--HKITIITGALRVEDGHIYNSTYIFS-KGN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASK-FSD 335 (418)
T ss_pred hc--cCCcEEEeeeeccCCceEEEEEEEC-CCC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCC-Ccc
Confidence 64 4788999987766678999999996 487 789999999887652 34457899976 688
Q ss_pred eecCCccEEEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcH---HHHHHHhhhhhhcc-ceEEEecCCCC
Q 022243 146 FQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSR---DHWRRVMQGHAGAN-VPLVASNRIGK 221 (300)
Q Consensus 146 ~~~~~~~ig~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~---~~~~~~~~~~A~e~-~~vv~~n~~G~ 221 (300)
+++++.|+|++||||..||+..+ +|+|+++++|| +.|+.+. .+++.+++.||+|+ ++++++++.|
T Consensus 336 ~~~~g~~ig~lICYE~~Fpel~r----~ga~~Lv~iSN------daWfg~s~~p~~~~~~~r~RAiE~g~pvvratNtG- 404 (418)
T PRK12291 336 FTLDGVKFRNAICYEATSEELYE----GNPKIVIAISN------NAWFVPSIEPTLQKLLLKYYARKYGKTIYHSANGS- 404 (418)
T ss_pred eeeCCeEEEEEEeeeecchHhhc----cCCCEEEEecc------cccCCCChhHHHHHHHHHHHHHHhCCcEEEEcCCc-
Confidence 99999999999999999999887 78999999999 3455432 35556677889999 9999999877
Q ss_pred ccccccCCCcceeeccceEEECCCCC
Q 022243 222 EIIETEHGKSQITFYGNSFIAGPTGE 247 (300)
Q Consensus 222 ~~~~~~~g~~~~~~~G~S~i~~p~G~ 247 (300)
.|+++||+-.
T Consensus 405 ----------------iSavIdp~~~ 414 (418)
T PRK12291 405 ----------------PSYIITPKLL 414 (418)
T ss_pred ----------------eeEEECcchh
Confidence 8999998643
No 46
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=3e-27 Score=221.40 Aligned_cols=226 Identities=22% Similarity=0.260 Sum_probs=170.9
Q ss_pred CCcceEEEEEeCCCCCCH----HHHHHHHHHHH---HHHH--hCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChh
Q 022243 5 KRREVVVSALQFACTDDV----STNLATAERLV---RAAH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPT 75 (300)
Q Consensus 5 ~~~~~~Ia~~Q~~~~~~~----~~n~~~~~~~i---~~A~--~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~ 75 (300)
.+++++|+++|.|++++. +.-...+...+ ..+. ..++|+|||||.+++-. .. ...+.
T Consensus 224 ~~~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~-~~-------------~~~~~ 289 (518)
T COG0815 224 GEPTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFD-LT-------------RHPDA 289 (518)
T ss_pred CCCceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccc-hh-------------hcchH
Confidence 345699999999995332 22222222222 2223 37899999999998721 11 11122
Q ss_pred HHHHHHHHHHcCcEEeeeeeec--cCC--ceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcc---------------eee
Q 022243 76 ILKMQELAKELGVVMPVSFFEE--ANN--AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEK---------------FYF 136 (300)
Q Consensus 76 ~~~l~~~a~~~~v~iv~g~~~~--~~~--~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~---------------~~~ 136 (300)
...+...+.+.++.+++|.... .++ .+|||+++++++|++..+|+|+||.|+++|-.- ..|
T Consensus 290 ~~~~~~~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f 369 (518)
T COG0815 290 LARLAEALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDF 369 (518)
T ss_pred HHHHHHHHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccccc
Confidence 5667788888888888884332 233 489999999999999999999999998876321 134
Q ss_pred cCCCCCceeeecCC-ccEEEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCCCCCCCc-HHHHHHH--hhhhhhcc-c
Q 022243 137 NPGDTGFKVFQTKF-AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDS-RDHWRRV--MQGHAGAN-V 211 (300)
Q Consensus 137 ~~G~~~~~~~~~~~-~~ig~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~-~~~~~~~--~~~~A~e~-~ 211 (300)
.+|+. ..++.+++ .+++++||||..||+..|....+|+|+++++|| +.|+.. ...|||+ .+.||+|+ .
T Consensus 370 ~~G~~-~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~qga~~Lin~SN------DAWf~~s~~p~QH~~~a~~RAiE~gr 442 (518)
T COG0815 370 SRGPG-PQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSN------DAWFGGSWGPYQHFQQARVRAVELGR 442 (518)
T ss_pred cCCCC-CcceecCCCceeeceeeehhhchHHHHHhhcCCCcEEEEccc------ccccCCCcchHHHHHHHHHHHHhcCC
Confidence 55776 35666655 569999999999999999999999999999999 567754 4566664 46799999 9
Q ss_pred eEEEecCCCCccccccCCCcceeeccceEEECCCCCcccccCCCCCcEEEEEechhh
Q 022243 212 PLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDK 268 (300)
Q Consensus 212 ~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~~i~~~~~~~~~~~~~~id~~~ 268 (300)
++|+++++| .|+++||+|++++..+.++.+++.+++.+..
T Consensus 443 p~iRAtNtG-----------------iSavIdp~Gri~~~l~~~~~~~l~~~v~~~~ 482 (518)
T COG0815 443 PLVRATNTG-----------------ISAVIDPRGRILAQLPYFTRGVLDATVPLKT 482 (518)
T ss_pred cEEEEcCCc-----------------ceEEECCCCCEEeecCCCCcceeeeeecccC
Confidence 999999887 9999999999999999999999999987764
No 47
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=99.92 E-value=1.7e-25 Score=199.12 Aligned_cols=255 Identities=21% Similarity=0.277 Sum_probs=203.7
Q ss_pred CCcceEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHH
Q 022243 5 KRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (300)
Q Consensus 5 ~~~~~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (300)
|..+++||.++.|. ..|++.|.++|.+-|++|+..||.+-+=||+-++||.|.| +|++.-....+.+.+..+.+--
T Consensus 1 m~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~D---Hf~E~Dt~~HswE~l~~l~~~~ 77 (706)
T KOG2303|consen 1 MGRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCED---HFLESDTLLHSWEMLAELVESP 77 (706)
T ss_pred CCceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHH---hhccchHHHHHHHHHHHHHcCC
Confidence 56789999999999 5899999999999999999999999999999999999976 2333222122233333333322
Q ss_pred HHcCcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCCcceeecCCCCC---------------------
Q 022243 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG--------------------- 142 (300)
Q Consensus 84 ~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~--------------------- 142 (300)
.-.++.+.+|++..+++-.||+.+++ -||+|+....|+.|.+.+.|.|.+||+|+...
T Consensus 78 ~~~~il~diGmPv~hr~~ryNCrv~~-~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q~tV 156 (706)
T KOG2303|consen 78 VTQDILCDIGMPVMHRNVRYNCRVLF-LNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQETV 156 (706)
T ss_pred CCCCeeEecCCchhhhhhhhccceee-cCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCCeee
Confidence 23478888999999999999999999 79999999999999999999999999988642
Q ss_pred ---ceeeecCCccEEEEeeccCCCHHH-HHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEec
Q 022243 143 ---FKVFQTKFAKIGVAICWDQWFPEA-ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASN 217 (300)
Q Consensus 143 ---~~~~~~~~~~ig~~IC~D~~~~~~-~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n 217 (300)
..++.+....||.-||.|+|.|.. ...++++|++|+++.|.+.. .+.+.....++........ -..+++|
T Consensus 157 PfGdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh-----~LrK~~~r~~li~~at~k~GGvYlyaN 231 (706)
T KOG2303|consen 157 PFGDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHH-----ELRKLNTRVDLILNATSKCGGVYLYAN 231 (706)
T ss_pred cccceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHH-----HHhhhhhhhHHHhcchhhcceEEEeec
Confidence 124455556799999999999964 67788999999999997432 2223345556666666677 8889999
Q ss_pred CCCCccccccCCCcceeeccceEEECCCCCcccccCCC---CCcEEEEEechhhHHhhhccC
Q 022243 218 RIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDK---EEAVLVAQFDLDKLKSKRSSW 276 (300)
Q Consensus 218 ~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~~i~~~~~~---~~~~~~~~id~~~~~~~r~~~ 276 (300)
+-|.++ +++.|+|+|+|+ -+|+++++...+ +.+++.+.+|+++++..|...
T Consensus 232 qrGCDG-------~RlYydGca~Ia-~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~ 285 (706)
T KOG2303|consen 232 QRGCDG-------DRLYYDGCAMIA-MNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASI 285 (706)
T ss_pred cCCCCC-------ceeEecchhhee-ecceeeeecccccccceEEEEEEecHHHHHHHHhhh
Confidence 999875 468999999999 599999999864 467999999999999999543
No 48
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.91 E-value=3.3e-23 Score=188.13 Aligned_cols=184 Identities=16% Similarity=0.095 Sum_probs=136.2
Q ss_pred eEEEEEeCCCCCCH-----HHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHH
Q 022243 9 VVVSALQFACTDDV-----STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (300)
Q Consensus 9 ~~Ia~~Q~~~~~~~-----~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (300)
.++-.+++++.++. -+..+.+.+.+++|.++++|+|||||+++++|.... .+.+.+.+
T Consensus 186 ~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~-----------------~~~~~~~l 248 (388)
T PRK13825 186 AGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTT-----------------ERLWRESL 248 (388)
T ss_pred CCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccccc-----------------cHHHHHHH
Confidence 46777777763111 233345666777788889999999999999874211 01235566
Q ss_pred HHcCcEEeeeeeeccCCceeeEEEEEcCCCCeeeeeeeccCCCCCCCC-------cceeecCCCCCceeeecCCccEEEE
Q 022243 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-------EKFYFNPGDTGFKVFQTKFAKIGVA 156 (300)
Q Consensus 84 ~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~~K~~l~~~~~~~-------e~~~~~~G~~~~~~~~~~~~~ig~~ 156 (300)
+++++.|++|..+++++++||++++++++|.. ..|+|+||.+++++. |..++.+|..+..++++++.|+|++
T Consensus 249 ~~~~i~II~G~~~~~~~~~yNsa~v~~~~G~~-~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~l 327 (388)
T PRK13825 249 RGSDVTVIAGAAVVDPGGYDNVLVAISAGGGR-ILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAPL 327 (388)
T ss_pred HhCCCeEEEEeeecCCCCceEEEEEEeCCCCe-eeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEEE
Confidence 88999999998877778899999999998864 589999998876532 5556777742236889999999999
Q ss_pred eeccCCC--HHHHHHHHHcCCcEEEeeccCCCCCCCCCCCcH---HHHHHHhhhhhhcc-ceEEEecC
Q 022243 157 ICWDQWF--PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSR---DHWRRVMQGHAGAN-VPLVASNR 218 (300)
Q Consensus 157 IC~D~~~--~~~~~~~~~~gadlii~ps~~~~~~~~~~~~~~---~~~~~~~~~~A~e~-~~vv~~n~ 218 (300)
||||..| |+..+ ..+|+|+|++|+| +.|+.+. .....+.+.||+|+ .++|+|.+
T Consensus 328 ICYE~~F~~pel~~--~~~GadlLv~~SN------d~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~N 387 (388)
T PRK13825 328 ICYEQLLVWPVLQS--MLHSPDVIVAVGN------GWWTKGTSIVAIQRASAEAWARLFGVPLVRAFN 387 (388)
T ss_pred EeeeecCcHHHHHh--hccCCCEEEEecC------chhcCCCcHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 9999988 55533 3689999999999 3455432 22334677899999 99999886
No 49
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=80.46 E-value=13 Score=32.79 Aligned_cols=67 Identities=18% Similarity=0.097 Sum_probs=42.1
Q ss_pred HHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-cc-CCceeeEEEEEcC
Q 022243 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-NNAHYNSIAIIDA 111 (300)
Q Consensus 34 ~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~-~~~~yN~~~vi~~ 111 (300)
+.....|||+|+.|-.+... ....+...++..|.+++++++..... .. +..++=.+.+++|
T Consensus 163 r~la~~GAdill~ps~~~~~-----------------~~~~w~~~~~aRA~En~~~vv~aN~~G~~~~~~~~G~S~ivdP 225 (291)
T cd07565 163 RECAYKGAELIIRIQGYMYP-----------------AKDQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIVNF 225 (291)
T ss_pred HHHHHCCCeEEEECCcCCCC-----------------cchHHHHHHHHHHHhcCcEEEEecccccCCCceeeeeeEEECC
Confidence 33445799999998633111 01245556677888999998854321 11 2245567888899
Q ss_pred CCCeee
Q 022243 112 DGSDLG 117 (300)
Q Consensus 112 ~G~i~~ 117 (300)
+|+++.
T Consensus 226 ~G~ila 231 (291)
T cd07565 226 DGRTLG 231 (291)
T ss_pred CCCEEE
Confidence 999864
No 50
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=75.99 E-value=19 Score=30.67 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=39.5
Q ss_pred HHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeee-eccCC-ceeeEEEEEcCC
Q 022243 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANN-AHYNSIAIIDAD 112 (300)
Q Consensus 35 ~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~-~~~~~-~~yN~~~vi~~~ 112 (300)
.....|||+|+.|=.....+. ..+...++..|.+.+++++.... -..++ .++=.+.+++|+
T Consensus 153 ~~~~~gadii~~p~~~~~~~~-----------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~i~~p~ 215 (254)
T cd07576 153 ALALAGADLVLVPTALMEPYG-----------------FVARTLVPARAFENQIFVAYANRCGAEDGLTYVGLSSIAGPD 215 (254)
T ss_pred HHHHCCCCEEEECCccCCCcc-----------------hhhhhhhHHHHHhCCCEEEEEcccCCCCCceeeeeeEEECCC
Confidence 334579999999854322211 12234456678889999875432 11122 344567788899
Q ss_pred CCeee
Q 022243 113 GSDLG 117 (300)
Q Consensus 113 G~i~~ 117 (300)
|+++.
T Consensus 216 G~il~ 220 (254)
T cd07576 216 GTVLA 220 (254)
T ss_pred CCEeE
Confidence 99763
No 51
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=73.37 E-value=24 Score=30.17 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=39.7
Q ss_pred HHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeee-eeccCCc-eeeEEEEE
Q 022243 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF-FEEANNA-HYNSIAII 109 (300)
Q Consensus 32 ~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~-~~~~~~~-~yN~~~vi 109 (300)
+.+.....|+|+++.|=.. ... ....+....+..|.+.+++++... ....++. .+=.+.++
T Consensus 154 ~~r~~~~~gadll~~ps~~----~~~-------------~~~~~~~~~~~rA~En~~~vv~~n~~g~~~~~~~~G~S~ii 216 (258)
T cd07584 154 VARILTLKGAEVIFCPSAW----REQ-------------DADIWDINLPARALENTVFVAAVNRVGNEGDLVLFGKSKIL 216 (258)
T ss_pred HHHHHHHCCCcEEEECCcc----CCC-------------CchHHHHHHHHHHHhCCcEEEEECccccCCCceecceeEEE
Confidence 3455556799999999421 100 001233344566788899988432 1122222 33467888
Q ss_pred cCCCCeee
Q 022243 110 DADGSDLG 117 (300)
Q Consensus 110 ~~~G~i~~ 117 (300)
+|+|+++.
T Consensus 217 ~p~G~il~ 224 (258)
T cd07584 217 NPRGQVLA 224 (258)
T ss_pred CCCCceee
Confidence 99999863
No 52
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=70.79 E-value=28 Score=29.86 Aligned_cols=73 Identities=19% Similarity=0.091 Sum_probs=40.5
Q ss_pred HHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeee-eccCC-ceeeEEEEEc
Q 022243 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANN-AHYNSIAIID 110 (300)
Q Consensus 33 i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~-~~~~~-~~yN~~~vi~ 110 (300)
.+.....|+|||+.|=.+..... .. ....+...++..|.+.+++++.... -..++ ...=.+.+++
T Consensus 149 ~r~l~~~gadlil~p~~~~~~~~-~~------------~~~~~~~~~~~rA~e~~~~vv~~n~~g~~~~~~~~G~S~i~~ 215 (261)
T cd07585 149 VRATALLGAEILFAPHATPGTTS-PK------------GREWWMRWLPARAYDNGVFVAACNGVGRDGGEVFPGGAMILD 215 (261)
T ss_pred HHHHHHCCCCEEEECCccCCCCC-cc------------hHHHHHHHhHHHHhhcCeEEEEecccccCCCceecceEEEEC
Confidence 34445679999999953221100 00 0012334456677788999885421 11112 2344677888
Q ss_pred CCCCeeee
Q 022243 111 ADGSDLGL 118 (300)
Q Consensus 111 ~~G~i~~~ 118 (300)
|+|+++..
T Consensus 216 p~G~v~~~ 223 (261)
T cd07585 216 PYGRVLAE 223 (261)
T ss_pred CCCCEEec
Confidence 99998643
No 53
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=69.16 E-value=23 Score=30.53 Aligned_cols=72 Identities=14% Similarity=0.067 Sum_probs=41.7
Q ss_pred HHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-ccC-CceeeEEEEEcCCC
Q 022243 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EAN-NAHYNSIAIIDADG 113 (300)
Q Consensus 36 A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~~-~~~yN~~~vi~~~G 113 (300)
....|||+|+.|=.+... ... ........+...+...|.+.+++++..... ..+ ..++-.+.+++|+|
T Consensus 155 ~~~~ga~lil~ps~~~~~--~~~--------~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~G~S~ii~p~G 224 (269)
T cd07586 155 LALDGADVIFIPANSPAR--GVG--------GDFDNEENWETLLKFYAMMNGVYVVFANRVGVEDGVYFWGGSRVVDPDG 224 (269)
T ss_pred HHHCCCCEEEEeCCCccc--cCc--------cccchhHHHHHHHHHHHHHhCCeEEEEeeecCcCCceEeCCcEEECCCC
Confidence 356799999999643211 000 000000134456677788999998855322 222 23455678889999
Q ss_pred Ceee
Q 022243 114 SDLG 117 (300)
Q Consensus 114 ~i~~ 117 (300)
+++.
T Consensus 225 ~il~ 228 (269)
T cd07586 225 EVVA 228 (269)
T ss_pred CEEE
Confidence 9864
No 54
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=68.81 E-value=20 Score=30.70 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=40.2
Q ss_pred HHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-ccC-C-ceeeEEEE
Q 022243 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EAN-N-AHYNSIAI 108 (300)
Q Consensus 32 ~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~~-~-~~yN~~~v 108 (300)
..+.....|||+|+.|=..... .. ...+...++..|.+++++++..... ..+ + ..+=.+.+
T Consensus 161 ~~r~~~~~gadli~~p~~~~~~--~~--------------~~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i 224 (265)
T cd07572 161 LARALARQGADILTVPAAFTMT--TG--------------PAHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMI 224 (265)
T ss_pred HHHHHHHCCCCEEEECCCCCCC--cc--------------hHHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEE
Confidence 4445567799999999422110 00 0133344566788889998865321 111 1 23335788
Q ss_pred EcCCCCee
Q 022243 109 IDADGSDL 116 (300)
Q Consensus 109 i~~~G~i~ 116 (300)
++|+|+++
T Consensus 225 ~~p~G~il 232 (265)
T cd07572 225 VDPWGEVL 232 (265)
T ss_pred ECCCcHHH
Confidence 89999875
No 55
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=68.43 E-value=25 Score=31.22 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=42.1
Q ss_pred HHHhC-CCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCC-
Q 022243 35 AAHGK-GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDAD- 112 (300)
Q Consensus 35 ~A~~~-~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~- 112 (300)
..... |+|+|+.|=.+.... ....+...++..|.+++++|++-..... ...+-.+.+++|.
T Consensus 191 ~la~~~GAdlil~paaw~~~~----------------~~~~w~~l~~arA~eN~~~vi~~N~~g~-~~~~G~S~iv~P~~ 253 (299)
T cd07567 191 ELVKKLGVDDIVFPTAWFSEL----------------PFLTAVQIQQAWAYANGVNLLAANYNNP-SAGMTGSGIYAGRS 253 (299)
T ss_pred HHHHhCCCCEEEECCccCCCC----------------CchhHHHHHHHHHHHcCceEEEecCCCC-cCccccceEEcCCC
Confidence 33345 999999994321110 0014455667888899999886543211 1234567888899
Q ss_pred CCeeeee
Q 022243 113 GSDLGLY 119 (300)
Q Consensus 113 G~i~~~~ 119 (300)
|+++...
T Consensus 254 G~v~a~~ 260 (299)
T cd07567 254 GALVYHY 260 (299)
T ss_pred CcEEEEe
Confidence 9988653
No 56
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=66.86 E-value=41 Score=30.54 Aligned_cols=70 Identities=24% Similarity=0.266 Sum_probs=43.0
Q ss_pred HHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-ccCC-ceeeEEEEE
Q 022243 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAII 109 (300)
Q Consensus 32 ~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~~~-~~yN~~~vi 109 (300)
+.+..+.+||+||+-|-. |.... ...+...++..|.+++++++..... .+++ .++=.+.++
T Consensus 174 ~~R~la~~GAelii~psa----~~~~~-------------~~~~~~~~rarA~eN~~yVv~aN~~G~~~~~~~~G~S~Iv 236 (345)
T PRK13286 174 IWRDCAMKGAELIVRCQG----YMYPA-------------KEQQVLVAKAMAWANNCYVAVANAAGFDGVYSYFGHSAII 236 (345)
T ss_pred HHHHHHHcCCeEEEEccc----cCCCc-------------hHHHHHHHHHHHHHCCCEEEEEecccccCCceeeeeEEEE
Confidence 444445679999998842 21100 0134455677788899998854322 1222 455678899
Q ss_pred cCCCCeeee
Q 022243 110 DADGSDLGL 118 (300)
Q Consensus 110 ~~~G~i~~~ 118 (300)
+|+|+++..
T Consensus 237 dp~G~vla~ 245 (345)
T PRK13286 237 GFDGRTLGE 245 (345)
T ss_pred CCCCcEEEe
Confidence 999998643
No 57
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=66.72 E-value=44 Score=28.76 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=39.9
Q ss_pred HHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeee-eeeccCC-ceeeEEEEEcC
Q 022243 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS-FFEEANN-AHYNSIAIIDA 111 (300)
Q Consensus 34 ~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g-~~~~~~~-~~yN~~~vi~~ 111 (300)
+.....|||+|+.|=.........+ .....+...+...|.+.+++++.. ..-..++ ..+=.+.+++|
T Consensus 154 r~~~~~ga~li~~ps~~~~~~~~~~-----------~~~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p 222 (268)
T cd07580 154 RLLALQGADIVCVPTNWVPMPRPPE-----------GGPPMANILAMAAAHSNGLFIACADRVGTERGQPFIGQSLIVGP 222 (268)
T ss_pred HHHHHcCCCEEEEcCcccccCCccc-----------ccCcHHHHhhHHHHhhCCcEEEEEeeeeeccCceEeeeeEEECC
Confidence 3345569999999964321110000 000122233455677889998753 3222222 34457789999
Q ss_pred CCCeee
Q 022243 112 DGSDLG 117 (300)
Q Consensus 112 ~G~i~~ 117 (300)
+|+++.
T Consensus 223 ~G~~~~ 228 (268)
T cd07580 223 DGWPLA 228 (268)
T ss_pred CCCeee
Confidence 999753
No 58
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=65.87 E-value=42 Score=29.13 Aligned_cols=77 Identities=18% Similarity=0.017 Sum_probs=42.0
Q ss_pred HHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-cc-----CCceeeEE
Q 022243 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-----NNAHYNSI 106 (300)
Q Consensus 33 i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~-----~~~~yN~~ 106 (300)
.+.....|+|+|+.|=.. ++...+.. . .......+...++..|.+.+++++..... .. +-.++=.+
T Consensus 160 ~r~~~~~gadlil~ps~~--~~~~~~~~----~--~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~S 231 (284)
T cd07573 160 ARLMALQGAEILFYPTAI--GSEPQEPP----E--GLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGSS 231 (284)
T ss_pred HHHHHHCCCCEEEecCcc--cCCCCCcc----c--cCCchHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeecee
Confidence 444556799999998432 22111100 0 00011234455566788899988854221 11 22344567
Q ss_pred EEEcCCCCeee
Q 022243 107 AIIDADGSDLG 117 (300)
Q Consensus 107 ~vi~~~G~i~~ 117 (300)
.+++|+|+++.
T Consensus 232 ~i~~p~G~i~~ 242 (284)
T cd07573 232 FIADPFGEILA 242 (284)
T ss_pred EEECCCCCeee
Confidence 78899999864
No 59
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=65.78 E-value=31 Score=29.42 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=40.0
Q ss_pred HHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeee-eecc-CCceeeEEEEE
Q 022243 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF-FEEA-NNAHYNSIAII 109 (300)
Q Consensus 32 ~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~-~~~~-~~~~yN~~~vi 109 (300)
..+.....|||+|+.|=.. +. . ....+...+...|.+++++++... .-.. +..++=.+.++
T Consensus 151 ~~r~~~~~ga~ll~~ps~~-~~---~-------------~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii 213 (253)
T cd07583 151 LFRKLALEGAEILFVPAEW-PA---A-------------RIEHWRTLLRARAIENQAFVVACNRVGTDGGNEFGGHSMVI 213 (253)
T ss_pred HHHHHHHcCCcEEEECCCC-CC---C-------------chHHHHHHHHHHHHHhCCEEEEEcCcccCCCceecceeEEE
Confidence 4445556799999999431 10 0 001233345667888888887432 2112 22344566778
Q ss_pred cCCCCeee
Q 022243 110 DADGSDLG 117 (300)
Q Consensus 110 ~~~G~i~~ 117 (300)
+|+|+++.
T Consensus 214 ~p~G~il~ 221 (253)
T cd07583 214 DPWGEVLA 221 (253)
T ss_pred CCCchhhe
Confidence 99999764
No 60
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=64.63 E-value=32 Score=29.44 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=40.4
Q ss_pred HHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeec-cCC-ceeeEEEEEcCCC
Q 022243 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANN-AHYNSIAIIDADG 113 (300)
Q Consensus 36 A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~-~~~-~~yN~~~vi~~~G 113 (300)
....|||+|+.|=.+ ++.... ...+...++..|.+.+++++...... .++ .+.=.+.+++|+|
T Consensus 158 ~~~~ga~ll~~ps~~--~~~~~~-------------~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~G~S~ii~p~G 222 (261)
T cd07570 158 LALAGADLILNLSAS--PFHLGK-------------QDYRRELVSSRSARTGLPYVYVNQVGGQDDLVFDGGSFIADNDG 222 (261)
T ss_pred HHHcCCcEEEEeCCC--ccccCc-------------HHHHHHHHHHHHHHhCCcEEEEeCCCCCceEEEECceEEEcCCC
Confidence 345699999999642 111000 01234557788889999988654311 111 2345678889999
Q ss_pred Ceee
Q 022243 114 SDLG 117 (300)
Q Consensus 114 ~i~~ 117 (300)
+++.
T Consensus 223 ~vl~ 226 (261)
T cd07570 223 ELLA 226 (261)
T ss_pred CEEE
Confidence 9874
No 61
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=64.28 E-value=28 Score=29.89 Aligned_cols=57 Identities=14% Similarity=0.018 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEe
Q 022243 20 DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (300)
Q Consensus 20 ~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv 91 (300)
++.....+.+.+.++...++|..+++|||-.-+... .. .++-.=...+|.+.++.|+
T Consensus 119 ~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g----------~l-----~~Fk~Ga~~lA~~~~~PIv 175 (245)
T PRK15018 119 NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGR----------GL-----LPFKTGAFHAAIAAGVPII 175 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCC----------CC-----CCccHHHHHHHHHcCCCEE
Confidence 455666667777777777778999999996543210 00 1333445677888888765
No 62
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=63.27 E-value=47 Score=28.94 Aligned_cols=69 Identities=17% Similarity=0.077 Sum_probs=38.5
Q ss_pred HHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeee-eccC----CceeeEEE
Q 022243 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEAN----NAHYNSIA 107 (300)
Q Consensus 33 i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~-~~~~----~~~yN~~~ 107 (300)
.+.....|||+|+.|=....++ ....+...+...|.+.+++++.... -... ..++-.+.
T Consensus 171 ~r~la~~Ga~li~~ps~~~~~~----------------~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S~ 234 (287)
T cd07568 171 WRALGLNGAEIVFNPSATVAGL----------------SEYLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSSY 234 (287)
T ss_pred HHHHHHCCCeEEEECCcCCCCC----------------chhhhHHHHHHHHHHCCcEEEEeccccccCCCccceEeceeE
Confidence 3444566999999985432211 0012222345556678888763221 1111 23456778
Q ss_pred EEcCCCCeee
Q 022243 108 IIDADGSDLG 117 (300)
Q Consensus 108 vi~~~G~i~~ 117 (300)
+++|+|+++.
T Consensus 235 ii~p~G~il~ 244 (287)
T cd07568 235 FVDPRGQFVA 244 (287)
T ss_pred EECCCceEEE
Confidence 8999999874
No 63
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=62.99 E-value=34 Score=29.75 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeee
Q 022243 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (300)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g 93 (300)
+..++.+.+.++.|+.-|++.|++|..... ......+..+.. .+.++.+.+.|+++|+.+.+=
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~---~~~~~~~~~~~~-----~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIRTIQLAGYDVY---YEEHDEETRRRF-----REGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEecCcccc---cCcCCHHHHHHH-----HHHHHHHHHHHHHcCCEEEEe
Confidence 456778899999999999999999753211 111111112211 145678888999999987753
No 64
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=62.47 E-value=47 Score=28.27 Aligned_cols=68 Identities=19% Similarity=0.115 Sum_probs=40.0
Q ss_pred HHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCC
Q 022243 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDAD 112 (300)
Q Consensus 33 i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~ 112 (300)
.+....+|+|+|+.|=..... . .....+...+...|.+.+++++.... .+....=.+.+++|+
T Consensus 156 ~~~~~~~ga~lil~ps~~~~~----~-----------~~~~~~~~~~~~rA~en~~~vv~~n~--~g~~~~G~S~i~~p~ 218 (255)
T cd07581 156 ARALALAGADVIVVPAAWVAG----P-----------GKEEHWETLLRARALENTVYVAAAGQ--AGPRGIGRSMVVDPL 218 (255)
T ss_pred HHHHHHCCCcEEEECCcccCC----C-----------CchHHHHHHHHHHHHHhCCEEEEEcC--cCCCcccceEEECCC
Confidence 344456799999998522111 0 00123445566778888998875431 122333457888899
Q ss_pred CCeee
Q 022243 113 GSDLG 117 (300)
Q Consensus 113 G~i~~ 117 (300)
|+++.
T Consensus 219 G~i~~ 223 (255)
T cd07581 219 GVVLA 223 (255)
T ss_pred cceee
Confidence 98764
No 65
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=62.23 E-value=45 Score=28.12 Aligned_cols=67 Identities=27% Similarity=0.233 Sum_probs=43.1
Q ss_pred HHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee--ccCCceeeEEEEEcC
Q 022243 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE--EANNAHYNSIAIIDA 111 (300)
Q Consensus 34 ~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~--~~~~~~yN~~~vi~~ 111 (300)
+.+...|+|+|+.|=...... ...+...+...|.+.+++++..... ..+...+-.+.+++|
T Consensus 153 ~~~~~~g~dli~~ps~~~~~~-----------------~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~G~S~i~~p 215 (253)
T cd07197 153 RELALKGADIILVPAAWPTAR-----------------REHWELLLRARAIENGVYVVAANRVGEEGGLEFAGGSMIVDP 215 (253)
T ss_pred HHHHHCCCcEEEECCcCCCcc-----------------hHHHHHHHHHHHHHhCCeEEEecCCCCCCCccccceeEEECC
Confidence 334566999999997543210 1244566777889999998854321 112355667788889
Q ss_pred CCCeee
Q 022243 112 DGSDLG 117 (300)
Q Consensus 112 ~G~i~~ 117 (300)
+|+++.
T Consensus 216 ~G~~~~ 221 (253)
T cd07197 216 DGEVLA 221 (253)
T ss_pred CCceee
Confidence 998763
No 66
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=61.01 E-value=43 Score=30.64 Aligned_cols=64 Identities=14% Similarity=-0.037 Sum_probs=38.4
Q ss_pred HhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-cc-----------------
Q 022243 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA----------------- 98 (300)
Q Consensus 37 ~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~----------------- 98 (300)
..+|||+|+.|=.+ ++. . ....|...++..|-+.+++++..... ..
T Consensus 238 a~~GAdiil~Psa~-~~~-~--------------~~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~~ 301 (363)
T cd07587 238 GLNGAEIVFNPSAT-VGA-L--------------SEPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHKD 301 (363)
T ss_pred HHcCCcEEEECCCc-CCC-C--------------chHHHHHHHHHHHHhcCcEEEEeccccccccccccccccccccccc
Confidence 45699999999532 110 0 01134455667788889998843211 00
Q ss_pred CCceeeEEEEEcCCCCee
Q 022243 99 NNAHYNSIAIIDADGSDL 116 (300)
Q Consensus 99 ~~~~yN~~~vi~~~G~i~ 116 (300)
...++-.+.+++|+|+++
T Consensus 302 ~~~f~G~S~Ii~P~G~il 319 (363)
T cd07587 302 FGHFYGSSYVAAPDGSRT 319 (363)
T ss_pred cccccceeEEECCCCCCc
Confidence 023566788888999864
No 67
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=60.19 E-value=37 Score=25.23 Aligned_cols=49 Identities=18% Similarity=0.043 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEe
Q 022243 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (300)
Q Consensus 28 ~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv 91 (300)
...+.+.++..+|-.+++|||-..... . .. .++..-...+|++.++.|+
T Consensus 77 ~~~~~~~~~l~~g~~v~ifPeG~~~~~---~-------~~-----~~f~~g~~~la~~~~~pvv 125 (130)
T TIGR00530 77 TALKAAIEVLKQGRSIGVFPEGTRSRG---R-------DI-----LPFKKGAFHIAIKAGVPIL 125 (130)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCC---C-------CC-----CCcchhHHHHHHHcCCCEE
Confidence 334445556677889999999764321 0 00 1334556678888888766
No 68
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=58.73 E-value=59 Score=27.80 Aligned_cols=64 Identities=20% Similarity=0.000 Sum_probs=37.7
Q ss_pred HHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeee-ecc-----CCceeeEEE
Q 022243 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEA-----NNAHYNSIA 107 (300)
Q Consensus 34 ~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~-~~~-----~~~~yN~~~ 107 (300)
+.....|||+|+.|-..... .+...+...|.+.+++++.... -.. +....-.+.
T Consensus 151 r~~~~~Gadli~~ps~~~~~--------------------~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~ 210 (259)
T cd07577 151 RTLALKGADIIAHPANLVLP--------------------YCPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKSQ 210 (259)
T ss_pred HHHHHcCCCEEEECCccCCc--------------------hhhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeE
Confidence 33445699999999532110 1112345667788898875321 111 112345678
Q ss_pred EEcCCCCeee
Q 022243 108 IIDADGSDLG 117 (300)
Q Consensus 108 vi~~~G~i~~ 117 (300)
+++|+|+++.
T Consensus 211 i~~p~G~i~~ 220 (259)
T cd07577 211 ITSPKGEVLA 220 (259)
T ss_pred EECCCCCEEe
Confidence 8899999864
No 69
>PLN02504 nitrilase
Probab=58.30 E-value=50 Score=29.98 Aligned_cols=63 Identities=19% Similarity=0.094 Sum_probs=39.2
Q ss_pred HHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee----------------c
Q 022243 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE----------------E 97 (300)
Q Consensus 34 ~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~----------------~ 97 (300)
+....+|||+++.|=.. + ...|...++..|.+.+++++..... .
T Consensus 196 r~la~~Gadii~~p~~~-~-------------------~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G~ 255 (346)
T PLN02504 196 TAMYAKGIEIYCAPTAD-S-------------------RETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSGT 255 (346)
T ss_pred HHHHHCCCeEEEECCCC-C-------------------chhHHHHHHHHHHccCcEEEEecccccccccCcccccccccc
Confidence 33446799999998421 0 1245556677888999998744221 0
Q ss_pred c-----C-CceeeEEEEEcCCCCee
Q 022243 98 A-----N-NAHYNSIAIIDADGSDL 116 (300)
Q Consensus 98 ~-----~-~~~yN~~~vi~~~G~i~ 116 (300)
. + -.++=.+.+++|+|+++
T Consensus 256 ~~~~~~~~~~~~G~S~IvdP~G~vl 280 (346)
T PLN02504 256 EEDLTPDSIVCAGGSVIISPSGTVL 280 (346)
T ss_pred cccccccccccCcceEEECCCCCEe
Confidence 0 1 12345688888999876
No 70
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=58.30 E-value=95 Score=26.52 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=45.3
Q ss_pred ceeeecCCccEEEEeeccCCC-----------------------------HH---HHHHHHHcCCcEEEeeccCCCCCCC
Q 022243 143 FKVFQTKFAKIGVAICWDQWF-----------------------------PE---AARAMVLQGAEILFYPTAIGSEPQD 190 (300)
Q Consensus 143 ~~~~~~~~~~ig~~IC~D~~~-----------------------------~~---~~~~~~~~gadlii~ps~~~~~~~~ 190 (300)
+.++++++.|||++-+.+... .. ..+.++ +++|++|+...|+.. +.
T Consensus 121 p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e-~~ 198 (250)
T PF09587_consen 121 PAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIE-YE 198 (250)
T ss_pred eEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCC-CC
Confidence 567788888999887776541 11 223333 679999999999752 21
Q ss_pred CCCCcHHHHHHHhhhhhhcc-ceEEEecCCCC
Q 022243 191 DGLDSRDHWRRVMQGHAGAN-VPLVASNRIGK 221 (300)
Q Consensus 191 ~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~ 221 (300)
... ..++.-.....++. +-+|...+...
T Consensus 199 --~~p-~~~q~~~a~~lidaGaDiIiG~HpHv 227 (250)
T PF09587_consen 199 --NYP-TPEQRELARALIDAGADIIIGHHPHV 227 (250)
T ss_pred --CCC-CHHHHHHHHHHHHcCCCEEEeCCCCc
Confidence 112 33333333345566 88888776653
No 71
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=58.17 E-value=48 Score=28.72 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEee
Q 022243 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (300)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~ 92 (300)
++.++.+.+.++.|+.-|++.|++|-. ..+.... .....+.. ...++.+.+.|+++|+.+.+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~-~~~~~~~~-----~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 90 ERALEIMKKAIRLAQDLGIRTIQLAGY--DVYYEEK-SEETRQRF-----IEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECCc--ccccccc-cHHHHHHH-----HHHHHHHHHHHHHhCCEEEE
Confidence 456788899999999999999998622 1111111 11111111 14567778888999988764
No 72
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=57.97 E-value=73 Score=27.48 Aligned_cols=74 Identities=18% Similarity=0.046 Sum_probs=41.6
Q ss_pred HHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-c-----cCCceeeEEE
Q 022243 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-E-----ANNAHYNSIA 107 (300)
Q Consensus 34 ~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~-----~~~~~yN~~~ 107 (300)
+....+|||+|+.|=...... .+. .......+...+...|.+.+++++..... . .+..++=.+.
T Consensus 160 r~~a~~ga~lil~ps~~~~~~--~~~--------~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~ 229 (279)
T TIGR03381 160 RAMALMGAEVLFYPTAIGSEP--HDP--------DLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSF 229 (279)
T ss_pred HHHHHcCCCEEEecCccCCCC--ccc--------ccccHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEE
Confidence 334456999999985321110 000 00011234455566788889988854321 1 1224556788
Q ss_pred EEcCCCCeee
Q 022243 108 IIDADGSDLG 117 (300)
Q Consensus 108 vi~~~G~i~~ 117 (300)
+++|+|+++.
T Consensus 230 i~~p~G~il~ 239 (279)
T TIGR03381 230 IADHTGELVA 239 (279)
T ss_pred EECCCCcEee
Confidence 8999999874
No 73
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=56.96 E-value=51 Score=21.57 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeee
Q 022243 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (300)
Q Consensus 28 ~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~ 94 (300)
...++++.|++.|.+.+.+=+..... ....+.+.++++++.++.|.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~---------------------~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLF---------------------GAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCccc---------------------CHHHHHHHHHHcCCeEEEEE
Confidence 46789999999999999999976221 11345667778899888885
No 74
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=56.50 E-value=79 Score=27.72 Aligned_cols=69 Identities=16% Similarity=0.023 Sum_probs=39.2
Q ss_pred HHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-ccC-----CceeeEE
Q 022243 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EAN-----NAHYNSI 106 (300)
Q Consensus 33 i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~~-----~~~yN~~ 106 (300)
.+.....|+|+|+.|=...... ....+...++..|.+.+++++..... ..+ ..+.-.+
T Consensus 182 ~r~la~~Gadlil~psa~~~~~----------------~~~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~~~~G~S 245 (294)
T cd07582 182 ARGLAMNGAEVLLRSSSEVPSV----------------ELDPWEIANRARALENLAYVVSANSGGIYGSPYPADSFGGGS 245 (294)
T ss_pred HHHHHHCCCcEEEEcCCCCCCc----------------chhhHHHHHHHHHHhcCCEEEEecccccCcccccCceeccee
Confidence 3444567999999986442211 00123344566777889988854321 111 1122456
Q ss_pred EEEcCCCCeee
Q 022243 107 AIIDADGSDLG 117 (300)
Q Consensus 107 ~vi~~~G~i~~ 117 (300)
.+++|+|+++.
T Consensus 246 ~ivdp~G~vla 256 (294)
T cd07582 246 MIVDYKGRVLA 256 (294)
T ss_pred EEECCCCCEEE
Confidence 77789999864
No 75
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=56.37 E-value=65 Score=27.84 Aligned_cols=65 Identities=20% Similarity=0.097 Sum_probs=43.9
Q ss_pred HhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeeccC---CceeeEEEEEcCCC
Q 022243 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADG 113 (300)
Q Consensus 37 ~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~~---~~~yN~~~vi~~~G 113 (300)
...|+++|+.|-.+..... ...+...++.-|-+++++++........ ...+-.+++++|.|
T Consensus 163 a~~Gaeii~~p~a~~~~~~----------------~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G 226 (274)
T COG0388 163 ALGGAELLLVPAAWPAERG----------------LDHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDG 226 (274)
T ss_pred HhcCCeEEEEcCCCCCccc----------------HHHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCc
Confidence 3348999999986544321 0244455677788889998865432221 46888899999999
Q ss_pred Ceee
Q 022243 114 SDLG 117 (300)
Q Consensus 114 ~i~~ 117 (300)
+++.
T Consensus 227 ~v~~ 230 (274)
T COG0388 227 EVLA 230 (274)
T ss_pred cEEe
Confidence 8654
No 76
>PLN02798 nitrilase
Probab=55.22 E-value=63 Score=28.23 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=40.8
Q ss_pred HHHHH-hCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-cc--CCceeeEEEE
Q 022243 33 VRAAH-GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA--NNAHYNSIAI 108 (300)
Q Consensus 33 i~~A~-~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~--~~~~yN~~~v 108 (300)
.+... ..|||+|+.|-...... ....+...++..|-+.+++++..... .. +...+=.+.+
T Consensus 172 ~r~~a~~~Gadlil~ps~~~~~~----------------~~~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~i 235 (286)
T PLN02798 172 YQQLRFEHGAQVLLVPSAFTKPT----------------GEAHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALI 235 (286)
T ss_pred HHHHHHhCCCcEEEECCcCCCCC----------------cHHHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEE
Confidence 34444 67999999996321100 00133344566777889988864221 11 2234556788
Q ss_pred EcCCCCeee
Q 022243 109 IDADGSDLG 117 (300)
Q Consensus 109 i~~~G~i~~ 117 (300)
++|+|+++.
T Consensus 236 i~p~G~il~ 244 (286)
T PLN02798 236 IDPWGTVVA 244 (286)
T ss_pred ECCCccchh
Confidence 899999864
No 77
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=55.13 E-value=52 Score=28.39 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEee
Q 022243 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (300)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~ 92 (300)
.+..++.+.+.++.|+.-|++.|+++-.. .++.. + ..+..+.. .+.++.+.+.|+++|+.+.+
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~~-~-~~~~~~~~-----~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYLT-P-PNVIWGRL-----AENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCC-C-HHHHHHHH-----HHHHHHHHHHHHHcCCEEEE
Confidence 35677899999999999999998886432 22211 1 11112211 15678889999999987754
No 78
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=54.85 E-value=47 Score=26.88 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeee
Q 022243 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (300)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g 93 (300)
+..++.+.+.++.|+.-|++.++++=.... ...........+.. .+.++.+.+.|+++|+.+.+=
T Consensus 67 ~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~-~~~~~~~~~~~~~~-----~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 67 EEALEYLKKAIDLAKRLGAKYIVVHSGRYP-SGPEDDTEENWERL-----AENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTBSEEEEECTTES-SSTTSSHHHHHHHH-----HHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCcccc-cccCCCHHHHHHHH-----HHHHHHHHhhhhhhcceEEEe
Confidence 445888999999999999999999832100 11111111122222 156788888888999876543
No 79
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=52.36 E-value=42 Score=24.20 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEeccccCC
Q 022243 24 TNLATAERLVRAAHGKGANIILIQELFEG 52 (300)
Q Consensus 24 ~n~~~~~~~i~~A~~~~~dliVfPE~~~~ 52 (300)
.+.+.+.+.++ +.+++..+++|||-...
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~ 87 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRS 87 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccC
Confidence 45555555554 55668999999997654
No 80
>PRK13981 NAD synthetase; Provisional
Probab=52.18 E-value=70 Score=30.96 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=41.4
Q ss_pred HHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-ccCC-ceeeEEEEEcC
Q 022243 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAIIDA 111 (300)
Q Consensus 34 ~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~~~-~~yN~~~vi~~ 111 (300)
+.....|||+|+.|=. .+|.... ...+...++..|.+++++++.-... ..++ .+.-.+.+++|
T Consensus 155 r~la~~Gadlil~psa--~~~~~~~-------------~~~~~~~~~~rA~En~~~vv~aN~vG~~~~~~f~G~S~i~dp 219 (540)
T PRK13981 155 ETLAEAGAELLLVPNA--SPYHRGK-------------PDLREAVLRARVRETGLPLVYLNQVGGQDELVFDGASFVLNA 219 (540)
T ss_pred HHHHHCCCcEEEEcCC--CcccCCc-------------HHHHHHHHHHHHHHhCCeEEEEecccCCCceEEeCceEEECC
Confidence 4445679999999932 2221110 0123356778889999988754321 1122 33456788889
Q ss_pred CCCeeee
Q 022243 112 DGSDLGL 118 (300)
Q Consensus 112 ~G~i~~~ 118 (300)
+|+++..
T Consensus 220 ~G~il~~ 226 (540)
T PRK13981 220 DGELAAR 226 (540)
T ss_pred CCCEeee
Confidence 9988643
No 81
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=51.39 E-value=77 Score=27.85 Aligned_cols=72 Identities=14% Similarity=-0.010 Sum_probs=40.9
Q ss_pred HHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeec--------------
Q 022243 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-------------- 97 (300)
Q Consensus 32 ~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~-------------- 97 (300)
+.+..+.+|||+++-|=. .++. .. .....+...++..|.+.+++++......
T Consensus 165 ~~r~~a~~ga~ii~~~~~--~~~~-~~-----------~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~ 230 (297)
T cd07564 165 ARYALYAQGEQIHVAPWP--DFSP-YY-----------LSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEE 230 (297)
T ss_pred HHHHHHHCCCeEEEECCC--Cccc-cc-----------ccHHHHHHHHHHHHHhcCCEEEEcccccChhHcccccccccc
Confidence 344445679999887421 1110 00 0012444556778889999988542110
Q ss_pred ---cCCceeeEEEEEcCCCCeee
Q 022243 98 ---ANNAHYNSIAIIDADGSDLG 117 (300)
Q Consensus 98 ---~~~~~yN~~~vi~~~G~i~~ 117 (300)
.+...+=.+.+++|+|+++.
T Consensus 231 ~~~~~~~~~G~S~iv~P~G~il~ 253 (297)
T cd07564 231 ADPLEVLGGGGSAIVGPDGEVLA 253 (297)
T ss_pred cccccccCCCceEEECCCCCeec
Confidence 11234567888999999863
No 82
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=50.83 E-value=71 Score=27.90 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCCCee
Q 022243 77 LKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (300)
Q Consensus 77 ~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~ 116 (300)
+.++.-|.+++++++............-.+.+++|+|+++
T Consensus 191 ~~~~aRA~EN~~~vv~aN~~g~~~~~~G~S~ii~P~G~v~ 230 (279)
T cd07579 191 HLARVRAGENNVYFAFANVPDPARGYTGWSGVFGPDTFAF 230 (279)
T ss_pred HHhHhHHhhCCeEEEEeeccCCccccccccEEECCCeEEc
Confidence 3466778889999886642211122334567889999875
No 83
>PLN02747 N-carbamolyputrescine amidase
Probab=50.07 E-value=1.1e+02 Score=26.74 Aligned_cols=75 Identities=17% Similarity=0.004 Sum_probs=42.2
Q ss_pred HHHHHhCCCeEEEeccccCCC-ccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeee-eec------cC---Cc
Q 022243 33 VRAAHGKGANIILIQELFEGY-YFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF-FEE------AN---NA 101 (300)
Q Consensus 33 i~~A~~~~~dliVfPE~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~-~~~------~~---~~ 101 (300)
.+....+|+|+|+.|=..-+. +.... .....+...++..|.+.+++++... .-. .+ ..
T Consensus 165 ~r~~~~~Ga~lil~ps~~~~~~~~~~~-----------~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~ 233 (296)
T PLN02747 165 ARAMVLQGAEVLLYPTAIGSEPQDPGL-----------DSRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKIT 233 (296)
T ss_pred HHHHHHCCCCEEEEeCccCCCCccccc-----------chHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCce
Confidence 444456799999998754211 00000 0012344556777888888887532 110 11 13
Q ss_pred eeeEEEEEcCCCCeeee
Q 022243 102 HYNSIAIIDADGSDLGL 118 (300)
Q Consensus 102 ~yN~~~vi~~~G~i~~~ 118 (300)
++=.+.+++|+|+++..
T Consensus 234 ~~G~S~i~~p~G~vl~~ 250 (296)
T PLN02747 234 FYGGSFIAGPTGEIVAE 250 (296)
T ss_pred EeeeeEEECCCCCEeec
Confidence 44567888999998753
No 84
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=47.87 E-value=80 Score=27.36 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEee
Q 022243 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (300)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~ 92 (300)
+...+.+++.++.|+.-|+..|+++-.. .++.. + .++..+.. .+.++.+.+.|+++||.|.+
T Consensus 95 ~~~~~~~~~~i~~a~~lG~~~i~~~~~~-~~~~~-~-~~~~~~~~-----~~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 95 AQALEIMRKAIQLAQDLGIRVIQLAGYD-VYYEQ-A-NNETRRRF-----IDGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCcc-ccccc-c-HHHHHHHH-----HHHHHHHHHHHHHhCCEEEE
Confidence 5567788999999999999999986211 01100 0 11111111 14567788888999987665
No 85
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=47.50 E-value=55 Score=24.31 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEe
Q 022243 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (300)
Q Consensus 28 ~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv 91 (300)
...+.+.+..+.+--+++|||-...... . . .++-.-...+|.+.++.|+
T Consensus 79 ~~~~~~~~~l~~~~~i~ifPEG~~~~~~---------~-~-----~~~~~G~~~~a~~~~~~iv 127 (132)
T PF01553_consen 79 KALKDIKEILRKGGSIVIFPEGTRSRSG---------E-L-----LPFKKGAFHIALKAKVPIV 127 (132)
T ss_dssp HHHHHHHHHHHC---EEE-TT-S---B------------B---------HHHHHHHHHH-----
T ss_pred hhHHHHHHHhhhcceeeecCCccCcCCC---------c-c-----CCccHHHHHHHHHcCCccc
Confidence 3333343445554459999996433210 0 0 1333445666677676664
No 86
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=46.56 E-value=83 Score=27.00 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=38.9
Q ss_pred CCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-cc--CCceeeEEEEEcCCCCe
Q 022243 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA--NNAHYNSIAIIDADGSD 115 (300)
Q Consensus 39 ~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~--~~~~yN~~~vi~~~G~i 115 (300)
.++|+|+.|=.+... ....+...+...|.+++++++..... .. +..++=.+.+++|+|++
T Consensus 154 ~gad~i~~~s~~~~~-----------------~~~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~v 216 (256)
T PRK10438 154 NDYDLALYVANWPAP-----------------RSLHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEI 216 (256)
T ss_pred cCCCEEEEecCCCCC-----------------chHHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcE
Confidence 478999998642110 01134455667888999998855321 11 12345578899999998
Q ss_pred eee
Q 022243 116 LGL 118 (300)
Q Consensus 116 ~~~ 118 (300)
+..
T Consensus 217 l~~ 219 (256)
T PRK10438 217 IAT 219 (256)
T ss_pred EEE
Confidence 643
No 87
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=45.86 E-value=1.1e+02 Score=22.64 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee------
Q 022243 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE------ 96 (300)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~------ 96 (300)
...+..+.++.++..+.++.+|...- +.+.. ....+.+++.++++++..-.....
T Consensus 39 ~~~~p~l~~l~~~~~~~~~~vi~i~~---~~~~~----------------~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 99 (126)
T cd03012 39 LHTLPYLTDLEQKYKDDGLVVIGVHS---PEFAF----------------ERDLANVKSAVLRYGITYPVANDNDYATWR 99 (126)
T ss_pred HHHHHHHHHHHHHcCcCCeEEEEecc---Ccccc----------------ccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence 34456666666665555666655421 00000 012345666667766543221110
Q ss_pred ccCCceeeEEEEEcCCCCeeee
Q 022243 97 EANNAHYNSIAIIDADGSDLGL 118 (300)
Q Consensus 97 ~~~~~~yN~~~vi~~~G~i~~~ 118 (300)
.-+-...-+.++||++|+++..
T Consensus 100 ~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred HhCCCcCCeEEEECCCCcEEEE
Confidence 0111335678899999987644
No 88
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=45.71 E-value=89 Score=25.29 Aligned_cols=63 Identities=24% Similarity=0.189 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEe
Q 022243 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (300)
Q Consensus 21 ~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv 91 (300)
+.++..+.+.++++++++.++.+|++-=.....+.... ... ..-..+.+.++++|+++++.++
T Consensus 88 ~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~-------~~~-~~~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 88 PYTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGG-------KVE-DTLGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCC-------ccc-ccchhHHHHHHHHHHHhCCCEE
Confidence 46677777788888888888998876211111111000 000 0113677889999999998765
No 89
>PLN00202 beta-ureidopropionase
Probab=45.42 E-value=1.1e+02 Score=28.55 Aligned_cols=64 Identities=14% Similarity=0.009 Sum_probs=37.9
Q ss_pred HhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-cc----------C------
Q 022243 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA----------N------ 99 (300)
Q Consensus 37 ~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~----------~------ 99 (300)
..+|||+|+.|=.+... . ....|...++..|.+.+++++...-. .+ +
T Consensus 259 a~~GAdiIl~Psa~~~~--~--------------~~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~ 322 (405)
T PLN00202 259 GLNGAEIVFNPSATVGD--L--------------SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKD 322 (405)
T ss_pred HHCCCcEEEECCCCCCc--c--------------CHHHHHHHHHHHHHhcCCEEEEeccccccccccccccccccccccc
Confidence 45699999998532110 0 00134455677788889988754211 10 1
Q ss_pred -CceeeEEEEEcCCCCee
Q 022243 100 -NAHYNSIAIIDADGSDL 116 (300)
Q Consensus 100 -~~~yN~~~vi~~~G~i~ 116 (300)
..++=.+.+++|+|+++
T Consensus 323 ~~~f~G~S~Iv~P~G~vl 340 (405)
T PLN00202 323 FGHFYGSSHFSAPDASCT 340 (405)
T ss_pred cccccceeEEEcCCCCEe
Confidence 23566778888888875
No 90
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=44.61 E-value=37 Score=29.36 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHcCcEEeeeeeeccCC---ceeeEEEEEcCCCCeeeeeeecc
Q 022243 75 TILKMQELAKELGVVMPVSFFEEANN---AHYNSIAIIDADGSDLGLYRKSH 123 (300)
Q Consensus 75 ~~~~l~~~a~~~~v~iv~g~~~~~~~---~~yN~~~vi~~~G~i~~~~~K~~ 123 (300)
..+.+++.|++|.|+-..|-...+++ ..-..+++++|+|+.+..|.+.+
T Consensus 211 T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 211 TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccC
Confidence 35889999999999977654332222 34567889999999876666543
No 91
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=44.42 E-value=41 Score=27.08 Aligned_cols=45 Identities=29% Similarity=0.394 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCcEEeeeeeeccC-C---ceeeEEEEEcCCCCeeeeee
Q 022243 76 ILKMQELAKELGVVMPVSFFEEAN-N---AHYNSIAIIDADGSDLGLYR 120 (300)
Q Consensus 76 ~~~l~~~a~~~~v~iv~g~~~~~~-~---~~yN~~~vi~~~G~i~~~~~ 120 (300)
...+.++++.+++...-......+ + .+-+..++++|+|++...|.
T Consensus 124 ~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 124 REEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 466788888888765433221111 1 24568899999999987764
No 92
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=43.31 E-value=93 Score=23.00 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHH-cCcEEeeee
Q 022243 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE-LGVVMPVSF 94 (300)
Q Consensus 27 ~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~-~~v~iv~g~ 94 (300)
+++...+++.++.++|.|.|.=-...+.... .. +.++.+.+.-++ +|+.|+.|+
T Consensus 52 ~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~---------~C-----P~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 52 RKLVRRIKKLKKNGADVIHLSSCMVKGNPHG---------PC-----PHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred hHHHHHHHHHHHCCCCEEEEcCCEecCCCCC---------CC-----CCHHHHHHHHHHHhCCCEeeec
Confidence 4555556666678999999987554432100 01 234555544444 488888774
No 93
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=43.05 E-value=76 Score=27.48 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEee
Q 022243 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (300)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~ 92 (300)
.+..++.+.+.++.|+.-|++.+++.-....+ ...+...+.. .+.++.+.+.|+++++.+.+
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~----~~~~~~~~~~-----~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGSYLG----QSKEEGLKRV-----IEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC----CCHHHHHHHH-----HHHHHHHHHhccCCCCEEEE
Confidence 56778888999999999999988873322111 1111111111 13445566666677877654
No 94
>PRK13287 amiF formamidase; Provisional
Probab=42.06 E-value=1.8e+02 Score=26.23 Aligned_cols=70 Identities=20% Similarity=0.114 Sum_probs=37.4
Q ss_pred HHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-ccCC-ceeeEEEEE
Q 022243 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAII 109 (300)
Q Consensus 32 ~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~~~-~~yN~~~vi 109 (300)
+.+.....||++|+-|=. |... ....|....+.-|-+++++++..... .++. .++=.+.++
T Consensus 173 ~~R~~a~~GAeill~~s~----~~~~-------------~~~~w~~~~~arA~en~~~vv~an~~G~~~~~~~~G~S~Ii 235 (333)
T PRK13287 173 MAREAAYKGANVMIRISG----YSTQ-------------VREQWILTNRSNAWQNLMYTASVNLAGYDGVFYYFGEGQVC 235 (333)
T ss_pred HHHHHHHCCCeEEEECCc----cCCc-------------chhHHHHHHHHHHHhCCcEEEEEeccccCCCeeeeeeeEEE
Confidence 334444569999998742 2110 01123223344466778887643221 1111 334567889
Q ss_pred cCCCCeeee
Q 022243 110 DADGSDLGL 118 (300)
Q Consensus 110 ~~~G~i~~~ 118 (300)
+|+|+++..
T Consensus 236 dp~G~vl~~ 244 (333)
T PRK13287 236 NFDGTTLVQ 244 (333)
T ss_pred CCCCcEEEe
Confidence 999998743
No 95
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=41.29 E-value=1.4e+02 Score=25.45 Aligned_cols=65 Identities=22% Similarity=0.103 Sum_probs=36.8
Q ss_pred HHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeee-e-ccCCceeeEEEEEcC
Q 022243 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-E-EANNAHYNSIAIIDA 111 (300)
Q Consensus 34 ~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~-~-~~~~~~yN~~~vi~~ 111 (300)
+.....|+++++.|=....+ .. ... .+...|.+.+++++.... - ..+....=.+.+++|
T Consensus 156 r~~~~~ga~ll~~ps~~~~~----~~------------~~~---~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~ii~p 216 (258)
T cd07578 156 RLLALGGADVICHISNWLAE----RT------------PAP---YWINRAFENGCYLIESNRWGLERGVQFSGGSCIIEP 216 (258)
T ss_pred HHHHHcCCCEEEEcCCCCCC----CC------------cch---HHHHhhhcCCeEEEEecceeccCCcceeeEEEEECC
Confidence 44445799999998532111 00 001 123466778888775432 1 112234557788999
Q ss_pred CCCeee
Q 022243 112 DGSDLG 117 (300)
Q Consensus 112 ~G~i~~ 117 (300)
+|+++.
T Consensus 217 ~G~il~ 222 (258)
T cd07578 217 DGTIQA 222 (258)
T ss_pred CCcEee
Confidence 999864
No 96
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=40.40 E-value=27 Score=31.24 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=49.7
Q ss_pred HHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeecc-CCceeeEEEEEc
Q 022243 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIID 110 (300)
Q Consensus 32 ~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~-~~~~yN~~~vi~ 110 (300)
.|++|...++++++.=|-... .+|......++.|+++-+++|++|++=.-+-+ =..+.|.++++
T Consensus 151 aIARALa~~P~iLL~DEaTSA--------------LDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm- 215 (339)
T COG1135 151 AIARALANNPKILLCDEATSA--------------LDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVL- 215 (339)
T ss_pred HHHHHHhcCCCEEEecCcccc--------------CChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEe-
Confidence 455677778899988884311 12222246788899999999999987653322 13689999999
Q ss_pred CCCCeeeee
Q 022243 111 ADGSDLGLY 119 (300)
Q Consensus 111 ~~G~i~~~~ 119 (300)
.+|+++..-
T Consensus 216 ~~G~lvE~G 224 (339)
T COG1135 216 DQGRLVEEG 224 (339)
T ss_pred eCCEEEEec
Confidence 489887543
No 97
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=40.18 E-value=79 Score=25.73 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhC--CCeEEEecccc
Q 022243 23 STNLATAERLVRAAHGK--GANIILIQELF 50 (300)
Q Consensus 23 ~~n~~~~~~~i~~A~~~--~~dliVfPE~~ 50 (300)
+...+.+.+.+++..+. +..+++|||-.
T Consensus 85 ~~d~~~i~~~~~~l~~~~~~~~lviFPEGT 114 (193)
T cd07990 85 EKDEKTIKRQLKRLKDSPEPFWLLIFPEGT 114 (193)
T ss_pred HHhHHHHHHHHHHHhcCCCCcEEEEeCccc
Confidence 34455666666665553 78899999954
No 98
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=39.97 E-value=1.4e+02 Score=23.56 Aligned_cols=64 Identities=20% Similarity=0.171 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEe
Q 022243 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (300)
Q Consensus 21 ~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv 91 (300)
+.++..+.+.++++++...+++++++.-....+. ........... ..+-+.++++|+++++.++
T Consensus 86 ~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~~~~--~~~~~~~~~~~-----~~~n~~l~~~a~~~~v~~v 149 (185)
T cd01832 86 DPDTYRADLEEAVRRLRAAGARVVVFTIPDPAVL--EPFRRRVRARL-----AAYNAVIRAVAARYGAVHV 149 (185)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEecCCCcccc--chhHHHHHHHH-----HHHHHHHHHHHHHcCCEEE
Confidence 4556667777777777777888888753222011 11111111111 2456778899999887655
No 99
>PRK12677 xylose isomerase; Provisional
Probab=38.02 E-value=2.3e+02 Score=26.17 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeE-EEecc
Q 022243 23 STNLATAERLVRAAHGKGANI-ILIQE 48 (300)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dl-iVfPE 48 (300)
+..++.+.+.|+.|.+-|++. +|||=
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~~G 136 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMWGG 136 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeC
Confidence 444777899999999999985 55544
No 100
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=37.84 E-value=52 Score=26.24 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=16.3
Q ss_pred eeeEEEEEcCCCCeeeeeeecc
Q 022243 102 HYNSIAIIDADGSDLGLYRKSH 123 (300)
Q Consensus 102 ~yN~~~vi~~~G~i~~~~~K~~ 123 (300)
.--+.+||+++|.|...+++..
T Consensus 119 ~~R~TfvId~dG~I~~~~~~v~ 140 (157)
T COG1225 119 IERSTFVIDPDGKIRYVWRKVK 140 (157)
T ss_pred ccceEEEECCCCeEEEEecCCC
Confidence 5567889999998877665554
No 101
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=37.29 E-value=76 Score=25.31 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=40.2
Q ss_pred HHHHHHHcCCcEEEeeccCCCCCCCC--CC-CcH-----------HHHHHHhhhhhhcc-ceEEEecCCCCccccccCCC
Q 022243 166 AARAMVLQGAEILFYPTAIGSEPQDD--GL-DSR-----------DHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGK 230 (300)
Q Consensus 166 ~~~~~~~~gadlii~ps~~~~~~~~~--~~-~~~-----------~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~ 230 (300)
..+.+..+|+|+|+.|=.+-. ++.. +. ... ..+....+..|.++ ++++.-...- ..
T Consensus 26 ~~~~a~~~~~dlvv~PE~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~~~-~~------- 96 (186)
T PF00795_consen 26 LIEEAARQGADLVVFPEMALP-GYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIPER-DD------- 96 (186)
T ss_dssp HHHHHHHTTESEEEEETTTTT-CS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEEEE-ET-------
T ss_pred HHHHHHHCCCCEEEcCcchhc-ccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccccccc-cc-------
Confidence 345556779999999998533 1100 00 000 22333445677777 7766652211 10
Q ss_pred cceeeccceEEECCCCCcc
Q 022243 231 SQITFYGNSFIAGPTGEIV 249 (300)
Q Consensus 231 ~~~~~~G~S~i~~p~G~~i 249 (300)
-.++-...+++|+|.++
T Consensus 97 --~~~~N~~~~~~~~g~~~ 113 (186)
T PF00795_consen 97 --GGLYNSAVVIDPDGEIL 113 (186)
T ss_dssp --TEEEEEEEEEETTSEEE
T ss_pred --ccccceeEEEEeeeccc
Confidence 12445667788999876
No 102
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=36.24 E-value=96 Score=24.61 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=22.4
Q ss_pred CCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEe
Q 022243 40 GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (300)
Q Consensus 40 ~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv 91 (300)
+..+++|||-.-+.- .++-.-...+|.+.++.|+
T Consensus 95 ~~~l~IFPEGtR~~~------------------~~fk~G~~~lA~~~~~PIv 128 (163)
T cd07988 95 EFVLAIAPEGTRSKV------------------DKWKTGFYHIARGAGVPIL 128 (163)
T ss_pred CcEEEEeCCCCCCCC------------------cChhhHHHHHHHHcCCCEE
Confidence 457999999654320 1333456678888888766
No 103
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=35.45 E-value=1.7e+02 Score=23.18 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=41.3
Q ss_pred EEEEEeCCC-C----CCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHH
Q 022243 10 VVSALQFAC-T----DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (300)
Q Consensus 10 ~Ia~~Q~~~-~----~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (300)
.+.+++... . ...++..+.+.++++.+.+.++.+|+.--.....+............. ..+-+.++++|+
T Consensus 61 d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~-----~~~n~~~~~~a~ 135 (183)
T cd04501 61 AVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKL-----KSLNRWLKDYAR 135 (183)
T ss_pred CEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHH-----HHHHHHHHHHHH
Confidence 455666554 1 245667777777888877788888776321111110000000000111 245677889999
Q ss_pred HcCcEEe
Q 022243 85 ELGVVMP 91 (300)
Q Consensus 85 ~~~v~iv 91 (300)
+.++.++
T Consensus 136 ~~~v~~v 142 (183)
T cd04501 136 ENGLLFL 142 (183)
T ss_pred HcCCCEE
Confidence 8887655
No 104
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=35.43 E-value=1.1e+02 Score=27.05 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeeccC-CceeeE
Q 022243 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNS 105 (300)
Q Consensus 27 ~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~~-~~~yN~ 105 (300)
++++..+..|.-+.++++.+=|-.+.-- . .......+.+++..++++++|+..+-.-++ ..+.++
T Consensus 161 qRmraeLaaaLLh~p~VLfLDEpTvgLD----------V----~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~r 226 (325)
T COG4586 161 QRMRAELAAALLHPPKVLFLDEPTVGLD----------V----NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDR 226 (325)
T ss_pred HHHHHHHHHHhcCCCcEEEecCCccCcc----------h----hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhh
Confidence 3566666666677899999999554321 0 011256678889999999999987643322 368899
Q ss_pred EEEEcCCCCeee
Q 022243 106 IAIIDADGSDLG 117 (300)
Q Consensus 106 ~~vi~~~G~i~~ 117 (300)
.++|+ +|+++.
T Consensus 227 v~~I~-~Gqlv~ 237 (325)
T COG4586 227 VLLID-QGQLVF 237 (325)
T ss_pred eEEee-CCcEee
Confidence 99994 888764
No 105
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=35.03 E-value=2.2e+02 Score=25.00 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=24.8
Q ss_pred HHHHHHcCcEEeeeee--eccCCceeeEEEEEcCCCCeee
Q 022243 80 QELAKELGVVMPVSFF--EEANNAHYNSIAIIDADGSDLG 117 (300)
Q Consensus 80 ~~~a~~~~v~iv~g~~--~~~~~~~yN~~~vi~~~G~i~~ 117 (300)
..-|.+.+++++.... ...+..++=.+.+++|+|+++.
T Consensus 220 ~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G~vla 259 (302)
T cd07569 220 QAGAYQNGTWVVAAAKAGMEDGCDLIGGSCIVAPTGEIVA 259 (302)
T ss_pred hhhhhcccceEEEeeccccCCCceEecceEEECCCCCEEE
Confidence 3446677888875432 1223356677888999999864
No 106
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=34.02 E-value=2.1e+02 Score=24.39 Aligned_cols=62 Identities=8% Similarity=-0.041 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCcc-chHHHhhcCCCCCChhHHHHHHHHHHcCcEEee
Q 022243 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-REDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (300)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~ 92 (300)
.+...+.+.+.++.|+.-|+..|+.|= |..+.+. ..+..+.. .+.+..+.+.|+++|+.+.+
T Consensus 80 ~~~~~~~~~~~i~~a~~lga~~i~~~~----g~~~~~~~~~~~~~~~-----~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 80 EEEFRDGVAAAIRYARALGNKKINCLV----GKTPAGFSSEQIHATL-----VENLRYAANMLMKEDILLLI 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECC----CCCCCCCCHHHHHHHH-----HHHHHHHHHHHHHcCCEEEE
Confidence 355667888999999999999887642 2221111 11111111 14456777888888887665
No 107
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=33.65 E-value=1.1e+02 Score=22.93 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=24.2
Q ss_pred HHHHHHHHcCcEEeeeeeeccCC--ceeeEEEEEcCCCCeeeeee
Q 022243 78 KMQELAKELGVVMPVSFFEEANN--AHYNSIAIIDADGSDLGLYR 120 (300)
Q Consensus 78 ~l~~~a~~~~v~iv~g~~~~~~~--~~yN~~~vi~~~G~i~~~~~ 120 (300)
....+++.+++...-......+. ..-.+.+||+++|+++..|+
T Consensus 97 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 97 EIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 34567777776644221100000 11236899999999987764
No 108
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=33.41 E-value=97 Score=24.73 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=29.7
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHhC-C-CeEEEeccccCCCc
Q 022243 10 VVSALQFACTDDVSTNLATAERLVRAAHGK-G-ANIILIQELFEGYY 54 (300)
Q Consensus 10 ~Ia~~Q~~~~~~~~~n~~~~~~~i~~A~~~-~-~dliVfPE~~~~g~ 54 (300)
||+++|++..++.+. ..++-.-|.+|.+. . -.|++.|--...+|
T Consensus 1 Kv~ivQ~pYlGd~~a-~r~mGerIGRaaQ~FEV~eLiiap~~~vda~ 46 (173)
T PF14419_consen 1 KVVIVQMPYLGDLKA-CRKMGERIGRAAQAFEVKELIIAPKEKVDAY 46 (173)
T ss_pred CeeEEeccccCCHHH-HHHHHHHHhHHHhhcchheEEEeccCccCHH
Confidence 689999999888654 44555555555543 3 38899988655554
No 109
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=33.34 E-value=1.2e+02 Score=19.39 Aligned_cols=41 Identities=7% Similarity=-0.012 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcE
Q 022243 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (300)
Q Consensus 27 ~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~ 89 (300)
+.+.+.++.-.....+.+-||.+. ..-...+-++|..+++.
T Consensus 2 ~~i~~~i~~F~~~~~~~~~fppm~----------------------~~~R~~vH~lA~~~~L~ 42 (58)
T cd02646 2 EDIKDEIEAFLLDSRDSLSFPPMD----------------------KHGRKTIHKLANCYNLK 42 (58)
T ss_pred hHHHHHHHHHHhCCCceEecCCCC----------------------HHHHHHHHHHHHHcCCc
Confidence 455666666555667889999853 13346788999998865
No 110
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=32.76 E-value=2.2e+02 Score=22.78 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeee
Q 022243 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (300)
Q Consensus 25 n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~ 95 (300)
..++..+.++.-++-|.|-||+=-....+...... +....-........++.+.+.|.++|+-|.+|..
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps--~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPS--KLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCc--cccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 34566777777788899999988766555321110 0100011112346889999999999999999964
No 111
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.56 E-value=1.8e+02 Score=20.62 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=27.9
Q ss_pred HcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCC
Q 022243 172 LQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGK 221 (300)
Q Consensus 172 ~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~ 221 (300)
...||+||.++.. -+.. .....+..|.++ .++++++..|.
T Consensus 46 i~~aD~VIv~t~~---------vsH~-~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 46 IKKADLVIVFTDY---------VSHN-AMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred cCCCCEEEEEeCC---------cChH-HHHHHHHHHHHcCCcEEEECCCCH
Confidence 3578999999983 2222 233456678888 99999987663
No 112
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=32.33 E-value=1.8e+02 Score=23.88 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCeEEEeccccCC
Q 022243 27 ATAERLVRAAHGKGANIILIQELFEG 52 (300)
Q Consensus 27 ~~~~~~i~~A~~~~~dliVfPE~~~~ 52 (300)
+.+.+.+.+..++|-.+++|||-.-+
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtrs 113 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTRS 113 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCCC
Confidence 34455566667779999999997644
No 113
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=32.31 E-value=97 Score=28.01 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=44.7
Q ss_pred HHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeecc-CCceeeEEEEEcC
Q 022243 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDA 111 (300)
Q Consensus 33 i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~-~~~~yN~~~vi~~ 111 (300)
+++|...++|+++.-|-+.. .+|.-..++.++|.++-++++-+|++=+-..+ .=++-+...+. .
T Consensus 175 LARAla~~~~IlLMDEaFSA--------------LDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim-k 239 (386)
T COG4175 175 LARALANDPDILLMDEAFSA--------------LDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM-K 239 (386)
T ss_pred HHHHHccCCCEEEecCchhh--------------cChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe-c
Confidence 34567789999999994321 12222236667888888888766665432222 23666777777 7
Q ss_pred CCCeee
Q 022243 112 DGSDLG 117 (300)
Q Consensus 112 ~G~i~~ 117 (300)
+|+++.
T Consensus 240 dG~ivQ 245 (386)
T COG4175 240 DGEIVQ 245 (386)
T ss_pred CCeEEE
Confidence 999863
No 114
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=32.17 E-value=1.5e+02 Score=24.05 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=40.2
Q ss_pred EEEEEeCCC-C----CCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHH
Q 022243 10 VVSALQFAC-T----DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (300)
Q Consensus 10 ~Ia~~Q~~~-~----~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (300)
.+.++++.+ . .+.++..+.+.++++++.+.++++++++- .++... ..... ..+-+.++++|+
T Consensus 73 d~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~-~~P~~~----~~~~~--------~~~~~~~~~~a~ 139 (191)
T PRK10528 73 RWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQI-RLPANY----GRRYN--------EAFSAIYPKLAK 139 (191)
T ss_pred CEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEe-ecCCcc----cHHHH--------HHHHHHHHHHHH
Confidence 455556555 1 25666777777888887777888887631 112110 00000 134466788999
Q ss_pred HcCcEEe
Q 022243 85 ELGVVMP 91 (300)
Q Consensus 85 ~~~v~iv 91 (300)
++++..+
T Consensus 140 ~~~v~~i 146 (191)
T PRK10528 140 EFDIPLL 146 (191)
T ss_pred HhCCCcc
Confidence 9987654
No 115
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=32.00 E-value=3e+02 Score=23.38 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeee-ee-ccCCceee
Q 022243 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF-FE-EANNAHYN 104 (300)
Q Consensus 27 ~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~-~~-~~~~~~yN 104 (300)
+.+.+.+++++ +++|+||.==.. |..... .+ .+..+.+.+.+-+.|+.+++|. +. ..+-..|+
T Consensus 171 ~~i~~~i~~~r-~~~D~vIv~~Hw--G~e~~~-----------~p-~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y~ 235 (250)
T PF09587_consen 171 ERIKEDIREAR-KKADVVIVSLHW--GIEYEN-----------YP-TPEQRELARALIDAGADIIIGHHPHVIQPVEIYK 235 (250)
T ss_pred HHHHHHHHHHh-cCCCEEEEEecc--CCCCCC-----------CC-CHHHHHHHHHHHHcCCCEEEeCCCCcccceEEEC
Confidence 78888899888 689997764433 211100 01 2444556656566788888774 21 22224555
Q ss_pred EEEEEcCCCCe
Q 022243 105 SIAIIDADGSD 115 (300)
Q Consensus 105 ~~~vi~~~G~i 115 (300)
..+++-.-|..
T Consensus 236 ~~~I~YSLGNf 246 (250)
T PF09587_consen 236 GKPIFYSLGNF 246 (250)
T ss_pred CEEEEEeCccc
Confidence 55555444543
No 116
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=30.44 E-value=2e+02 Score=25.27 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCc
Q 022243 20 DDVSTNLATAERLVRAAHGKGANIILIQELFEGYY 54 (300)
Q Consensus 20 ~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~ 54 (300)
.+.++.++++.+.++.|++.|..+.+-+|.+.++|
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~ 142 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM 142 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC
Confidence 46788999999999999999999999999754444
No 117
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=29.43 E-value=2.2e+02 Score=25.15 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=45.0
Q ss_pred HHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeecc-CCceeeEEEEEcC
Q 022243 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDA 111 (300)
Q Consensus 33 i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~-~~~~yN~~~vi~~ 111 (300)
+..|-..+++++++=|=. +|. ++.....+.+.|++++++.+.+|++.+-... -..+.+..+++ .
T Consensus 147 ia~aL~~~P~lliLDEPt-~GL-------------Dp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il-~ 211 (293)
T COG1131 147 IALALLHDPELLILDEPT-SGL-------------DPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIIL-N 211 (293)
T ss_pred HHHHHhcCCCEEEECCCC-cCC-------------CHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEE-e
Confidence 334556688999999922 221 1111136778889999988777776653221 12457778888 6
Q ss_pred CCCeeeee
Q 022243 112 DGSDLGLY 119 (300)
Q Consensus 112 ~G~i~~~~ 119 (300)
+|+++...
T Consensus 212 ~G~~~~~g 219 (293)
T COG1131 212 DGKIIAEG 219 (293)
T ss_pred CCEEEEeC
Confidence 89886544
No 118
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=29.27 E-value=1.8e+02 Score=22.62 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEe
Q 022243 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (300)
Q Consensus 21 ~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv 91 (300)
+.+...+.+.++++.+.+.++.+++..=. .+... ...+ ...+-+.++++|+++++.++
T Consensus 82 ~~~~~~~~l~~li~~~~~~~~~vil~~~~-~~~~~----~~~~--------~~~~~~~~~~~a~~~~~~~~ 139 (177)
T cd01822 82 PPDQTRANLRQMIETAQARGAPVLLVGMQ-APPNY----GPRY--------TRRFAAIYPELAEEYGVPLV 139 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCcc----chHH--------HHHHHHHHHHHHHHcCCcEe
Confidence 45667777788888877778998875210 11100 0001 12456778889999887644
No 119
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=28.44 E-value=3.5e+02 Score=23.11 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEec
Q 022243 23 STNLATAERLVRAAHGKGANIILIQ 47 (300)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dliVfP 47 (300)
...+..+.++.++.++.|+.+|-++
T Consensus 115 ~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 115 SSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4446667777777777789998887
No 120
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.20 E-value=1.4e+02 Score=25.38 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=44.3
Q ss_pred HHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeecc-CCceeeEEEEEc
Q 022243 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIID 110 (300)
Q Consensus 32 ~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~-~~~~yN~~~vi~ 110 (300)
.|++|...++++++|=|-.. ...++.. .+.++.+.++|++-=+.|++.. +-. ....-+..++.
T Consensus 146 AIARALaM~P~vmLFDEPTS------ALDPElv--------~EVL~vm~~LA~eGmTMivVTH-EM~FAr~VadrviFm- 209 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTS------ALDPELV--------GEVLDVMKDLAEEGMTMIIVTH-EMGFAREVADRVIFM- 209 (240)
T ss_pred HHHHHHcCCCCEEeecCCcc------cCCHHHH--------HHHHHHHHHHHHcCCeEEEEec-hhHHHHHhhheEEEe-
Confidence 45667778999999999321 1112111 3678889999887433333331 110 12355667777
Q ss_pred CCCCeeeeeeeccC
Q 022243 111 ADGSDLGLYRKSHI 124 (300)
Q Consensus 111 ~~G~i~~~~~K~~l 124 (300)
.+|.++.......+
T Consensus 210 d~G~iie~g~p~~~ 223 (240)
T COG1126 210 DQGKIIEEGPPEEF 223 (240)
T ss_pred eCCEEEEecCHHHH
Confidence 48877665544433
No 121
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=27.94 E-value=72 Score=24.63 Aligned_cols=42 Identities=7% Similarity=0.002 Sum_probs=24.4
Q ss_pred eEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCC
Q 022243 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEG 52 (300)
Q Consensus 9 ~~Ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~ 52 (300)
..-++.+.++ .. ..+.+++.++.++|.+.+..++.||+.+.+
T Consensus 47 ~h~gi~~~PipIL--~a~~~~L~~l~~~a~~~~i~~~~F~~~aq~ 89 (133)
T PF09391_consen 47 AHPGISHIPIPIL--KANSEQLRELRQKALEREITVVDFTDEAQS 89 (133)
T ss_dssp EE---BSS-EEEE--EE-HHHHHHHHHHHHHTT---EEEEGGGGG
T ss_pred CCCCCCCcCeEEE--EcCHHHHHHHHHHHHHCCCeEEeChHHHhh
Confidence 3444555554 11 226788888899988889999999998764
No 122
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=27.25 E-value=2.8e+02 Score=20.98 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEec
Q 022243 24 TNLATAERLVRAAHGKGANIILIQ 47 (300)
Q Consensus 24 ~n~~~~~~~i~~A~~~~~dliVfP 47 (300)
..+..+.++.++..+.++++|.+.
T Consensus 46 ~~~~~l~~~~~~~~~~~v~vi~vs 69 (149)
T cd03018 46 KELCALRDSLELFEAAGAEVLGIS 69 (149)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEec
Confidence 355556666666666678877765
No 123
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.23 E-value=2.2e+02 Score=21.81 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCeEEEeccccCC
Q 022243 29 AERLVRAAHGKGANIILIQELFEG 52 (300)
Q Consensus 29 ~~~~i~~A~~~~~dliVfPE~~~~ 52 (300)
..++++.|.+++||+|.+.=+..+
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~ 62 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGH 62 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccC
Confidence 456778888889999998654433
No 124
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=27.04 E-value=3.2e+02 Score=21.65 Aligned_cols=13 Identities=0% Similarity=0.041 Sum_probs=10.5
Q ss_pred cceEEEEEeCCCC
Q 022243 7 REVVVSALQFACT 19 (300)
Q Consensus 7 ~~~~Ia~~Q~~~~ 19 (300)
..+||+++.....
T Consensus 11 ~~~riaIV~s~~n 23 (154)
T PRK00061 11 KGLRIGIVVARFN 23 (154)
T ss_pred CCCEEEEEEecCc
Confidence 4589999999873
No 125
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=26.98 E-value=1.9e+02 Score=23.81 Aligned_cols=58 Identities=14% Similarity=0.040 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEe
Q 022243 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (300)
Q Consensus 24 ~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv 91 (300)
.+.+.+.+..+ +.++|-.++||||-..+...... ......++-.-...+|.+.++.|+
T Consensus 83 ~~~~~~~~~~~-~L~~G~~l~IFPEGtrs~~~~~~---------g~~~~~~fk~G~~~lA~~~~~pIv 140 (210)
T cd07986 83 KNRESLREALR-HLKNGGALIIFPAGRVSTASPPF---------GRVSDRPWNPFVARLARKAKAPVV 140 (210)
T ss_pred hhHHHHHHHHH-HHhCCCEEEEECCcccccccccC---------CccccCCccHHHHHHHHHHCCCEE
Confidence 34444444433 44567799999996544221100 000012344556778888888776
No 126
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=26.65 E-value=1.7e+02 Score=24.84 Aligned_cols=44 Identities=25% Similarity=0.134 Sum_probs=29.4
Q ss_pred HHHHHHhCC-CeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeee
Q 022243 32 LVRAAHGKG-ANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (300)
Q Consensus 32 ~i~~A~~~~-~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~ 94 (300)
..+.|.+++ +|+|.+||..-..+. .-..+.++|.+.++.|-+.+
T Consensus 89 v~R~Av~~~rVDil~~p~~~r~~~g-------------------ldh~~a~laa~~~valeisl 133 (229)
T COG1603 89 VNRAAVENKRVDILSHPETGRKDPG-------------------LDHVLARLAAEKGVALEISL 133 (229)
T ss_pred HHHHHHhccCccEEEcccccCCCcc-------------------ccHHHHHHHHhcCceEEEeh
Confidence 455666665 999999996532211 11357788888888876654
No 127
>smart00037 CNX Connexin homologues. Connexin channels participate in the regulation of signaling between developing and differentiated cell types.
Probab=26.31 E-value=28 Score=19.84 Aligned_cols=9 Identities=56% Similarity=1.272 Sum_probs=7.7
Q ss_pred eeccCCCHH
Q 022243 157 ICWDQWFPE 165 (300)
Q Consensus 157 IC~D~~~~~ 165 (300)
+|||..||.
T Consensus 22 vCyD~~fPi 30 (34)
T smart00037 22 VCYDQAFPI 30 (34)
T ss_pred eeccccccC
Confidence 899999984
No 128
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.97 E-value=81 Score=27.13 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=45.3
Q ss_pred HHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeecc-CCceeeEEEEEc
Q 022243 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIID 110 (300)
Q Consensus 32 ~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~-~~~~yN~~~vi~ 110 (300)
.|++|.-.++.+|+-=|=. ...+|.......+.|++++++.|+++++..-..+ --+++...+-+
T Consensus 157 aIARaL~Q~pkiILADEPv--------------asLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl- 221 (258)
T COG3638 157 AIARALVQQPKIILADEPV--------------ASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGL- 221 (258)
T ss_pred HHHHHHhcCCCEEecCCcc--------------cccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEe-
Confidence 3555666788999988821 1123333456778999999999999998763211 12455566666
Q ss_pred CCCCee
Q 022243 111 ADGSDL 116 (300)
Q Consensus 111 ~~G~i~ 116 (300)
.+|+++
T Consensus 222 ~~G~iv 227 (258)
T COG3638 222 KAGRIV 227 (258)
T ss_pred cCCcEE
Confidence 577764
No 129
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=25.91 E-value=2e+02 Score=19.47 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCeEEEecccc-CCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEee
Q 022243 29 AERLVRAAHGKGANIILIQELF-EGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (300)
Q Consensus 29 ~~~~i~~A~~~~~dliVfPE~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~ 92 (300)
...+++.|.+ +.+.||+..+. +.+-. ......+.+......-..+...|...|.++|+.++.
T Consensus 13 a~~iv~~~~~-~~~~Ivie~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~yka~~~Gi~v~~ 75 (82)
T TIGR01766 13 VKQIVEYAKE-NNGTIVLEDLKNIKEMV-DKKSKYLRRKLHQWSFRKLISKIKYKAEEYGIEVIE 75 (82)
T ss_pred HHHHHHHHHH-cCCEEEECCccchhhhc-chhhHHHHHHHHhhhHHHHHHHHHHHHHHcCCeEEE
Confidence 3556666777 67999998876 33211 000111111111111135678888899999998764
No 130
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=25.89 E-value=1.8e+02 Score=24.63 Aligned_cols=71 Identities=11% Similarity=-0.034 Sum_probs=39.9
Q ss_pred HHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeecc-CCceeeEEEEEc
Q 022243 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIID 110 (300)
Q Consensus 32 ~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~-~~~~yN~~~vi~ 110 (300)
.|++|.-++++++||-|-+ +|.. .. ....+.+. ....++-+-.+++++-.-. -..+..+.+++
T Consensus 143 ~iARAlvh~P~i~vlDEP~-sGLD-------i~------~~r~~~df-i~q~k~egr~viFSSH~m~EvealCDrvivl- 206 (245)
T COG4555 143 AIARALVHDPSILVLDEPT-SGLD-------IR------TRRKFHDF-IKQLKNEGRAVIFSSHIMQEVEALCDRVIVL- 206 (245)
T ss_pred HHHHHHhcCCCeEEEcCCC-CCcc-------HH------HHHHHHHH-HHHhhcCCcEEEEecccHHHHHHhhheEEEE-
Confidence 3445666799999999933 3321 00 01123333 3344555666666643222 23477888888
Q ss_pred CCCCeeee
Q 022243 111 ADGSDLGL 118 (300)
Q Consensus 111 ~~G~i~~~ 118 (300)
.+|+++..
T Consensus 207 h~Gevv~~ 214 (245)
T COG4555 207 HKGEVVLE 214 (245)
T ss_pred ecCcEEEc
Confidence 78988743
No 131
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=25.85 E-value=3.6e+02 Score=22.46 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCCCeeeee
Q 022243 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLY 119 (300)
Q Consensus 74 ~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~~~~ 119 (300)
...+.|.+++++.+..|++-+-....-......+++ .+|+++..+
T Consensus 183 ~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l-~~G~i~~~~ 227 (233)
T PRK11629 183 SIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM-RDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEE-ECCEEEEEe
Confidence 345666666655566555443221111123455666 578876433
No 132
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.78 E-value=3.9e+02 Score=25.16 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHcCcEEe-eeeeeccCC--------ceeeEEEEEcC
Q 022243 74 PTILKMQELAKELGVVMP-VSFFEEANN--------AHYNSIAIIDA 111 (300)
Q Consensus 74 ~~~~~l~~~a~~~~v~iv-~g~~~~~~~--------~~yN~~~vi~~ 111 (300)
+....|.++||..+++++ +|...++|. ..-.+.+.|.-
T Consensus 197 e~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLEHmVDtVlyFEG 243 (456)
T COG1066 197 EVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRVLEHMVDTVLYFEG 243 (456)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEEcccccccCchheeeeeeEEEEEec
Confidence 456789999999999887 677766653 46788888843
No 133
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=25.76 E-value=1.3e+02 Score=22.60 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=33.0
Q ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccCCC
Q 022243 7 REVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGY 53 (300)
Q Consensus 7 ~~~~Ia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g 53 (300)
+..+|+.+...- -+-...+...++|..+-+.+++.|++|+..++.
T Consensus 4 ~~~~v~~~~s~~--~~i~~~qdalDLi~~~~~~~~~~i~l~~~~l~~ 48 (113)
T PF13788_consen 4 NGIRVAEVSSDE--PLISDEQDALDLIGTAYEHGADRIILPKEALSE 48 (113)
T ss_pred CCeEEEEEeCCC--CeecchhHHHHHHHHHHHcCCCEEEEEhHHCCH
Confidence 457787776653 223344667778888888999999999988875
No 134
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=25.57 E-value=90 Score=25.63 Aligned_cols=25 Identities=20% Similarity=-0.005 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCCeEEEeccccCC
Q 022243 28 TAERLVRAAHGKGANIILIQELFEG 52 (300)
Q Consensus 28 ~~~~~i~~A~~~~~dliVfPE~~~~ 52 (300)
...+.+.++.++|-.++||||-..+
T Consensus 98 ~~~~~~~~~l~~G~~l~IFPEGtr~ 122 (203)
T cd07992 98 AVFDAVGEALKAGGAIGIFPEGGSH 122 (203)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 3344455566678899999997643
No 135
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=25.38 E-value=56 Score=23.90 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhCCCeE
Q 022243 28 TAERLVRAAHGKGANI 43 (300)
Q Consensus 28 ~~~~~i~~A~~~~~dl 43 (300)
....+++-|.++++||
T Consensus 50 d~~~l~~~a~~~~idl 65 (100)
T PF02844_consen 50 DPEELADFAKENKIDL 65 (100)
T ss_dssp -HHHHHHHHHHTTESE
T ss_pred CHHHHHHHHHHcCCCE
Confidence 3334444444444444
No 136
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.35 E-value=3.9e+02 Score=22.00 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHcCcEEeeeeeecc-CCceeeEEEEEcC-CCCeeee
Q 022243 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDA-DGSDLGL 118 (300)
Q Consensus 74 ~~~~~l~~~a~~~~v~iv~g~~~~~-~~~~yN~~~vi~~-~G~i~~~ 118 (300)
.+.+.|.++.++.+..|++-+-... -..+.+..++++. +|+++..
T Consensus 169 ~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 169 QLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 4456677776665655554432211 1245677788854 6887543
No 137
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=25.14 E-value=2.6e+02 Score=23.16 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEee
Q 022243 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (300)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~ 92 (300)
....+.+.+.++ +.++|-.+++|||-.-+.. . .. .++..-...+|++.++.|+-
T Consensus 106 ~~~~~~~~~~~~-~l~~g~~v~IfPEGtr~~~--~--------~~-----~~f~~G~~~lA~~~~~pIvP 159 (214)
T PLN02901 106 RSQLECLKRCME-LLKKGASVFFFPEGTRSKD--G--------KL-----AAFKKGAFSVAAKTGVPVVP 159 (214)
T ss_pred HHHHHHHHHHHH-HHhCCCEEEEeCCCCCCCC--C--------cc-----cCchhhHHHHHHHcCCCEEE
Confidence 333444444444 4456889999999653210 0 00 12333455788888887663
No 138
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.57 E-value=3.4e+02 Score=21.04 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=41.5
Q ss_pred EEEEEeCCC-C----CCHHHHHHHHHHHHHHHHh--CCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHH
Q 022243 10 VVSALQFAC-T----DDVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQEL 82 (300)
Q Consensus 10 ~Ia~~Q~~~-~----~~~~~n~~~~~~~i~~A~~--~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (300)
.+.+++... . .+.+...+.+.++++.+.+ .++.+++..=....+... .. .... ..+-+.++++
T Consensus 50 d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~~-~~----~~~~-----~~~n~~l~~~ 119 (169)
T cd01828 50 KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGELKS-IP----NEQI-----EELNRQLAQL 119 (169)
T ss_pred CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCccCc-CC----HHHH-----HHHHHHHHHH
Confidence 455555554 1 3467777777778877766 688988864322111000 00 0000 2456778889
Q ss_pred HHHcCcEEe
Q 022243 83 AKELGVVMP 91 (300)
Q Consensus 83 a~~~~v~iv 91 (300)
|++.++.++
T Consensus 120 a~~~~~~~i 128 (169)
T cd01828 120 AQQEGVTFL 128 (169)
T ss_pred HHHCCCEEE
Confidence 998888766
No 139
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=24.51 E-value=84 Score=18.73 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=9.8
Q ss_pred cceEEECCCCCccccc
Q 022243 237 GNSFIAGPTGEIVAAA 252 (300)
Q Consensus 237 G~S~i~~p~G~~i~~~ 252 (300)
|.|.|+-|+|..+.-.
T Consensus 1 G~SGii~~dG~~~q~~ 16 (40)
T PF08140_consen 1 GPSGIITPDGTNVQFP 16 (40)
T ss_pred CCCceECCCCCEEECC
Confidence 4566777777665444
No 140
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=24.00 E-value=1.3e+02 Score=26.06 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeec-cCCceeeEE
Q 022243 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANNAHYNSI 106 (300)
Q Consensus 28 ~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~-~~~~~yN~~ 106 (300)
+=+-+++.|...+++++++=|=... .+.. .+-+.++.+++++++.+.+|++-.-+. ..-++....
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs~-----------LDi~---~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTSH-----------LDIA---HQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCccc-----------cCHH---HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 4455777888889999999992211 1111 113677889999999898888765322 122455666
Q ss_pred EEEcCCCCeee
Q 022243 107 AIIDADGSDLG 117 (300)
Q Consensus 107 ~vi~~~G~i~~ 117 (300)
+++ .+|+++.
T Consensus 210 i~l-k~G~i~a 219 (258)
T COG1120 210 ILL-KDGKIVA 219 (258)
T ss_pred EEE-ECCeEEe
Confidence 666 6888754
No 141
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=24.00 E-value=1e+02 Score=26.73 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeecc-CCceeeEEEE
Q 022243 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAI 108 (300)
Q Consensus 30 ~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~-~~~~yN~~~v 108 (300)
+-++++|-..++||+++=|=+. | . ++.....+.+.|.++.++ |++|++-.-+.. -..+++..++
T Consensus 147 RV~lARAL~~~p~lllLDEP~~-g---v----------D~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~ 211 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFT-G---V----------DVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVIC 211 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcc-c---C----------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEE
Confidence 3467778888999999999332 1 1 111123667888888888 888876542211 1246667777
Q ss_pred Ec
Q 022243 109 ID 110 (300)
Q Consensus 109 i~ 110 (300)
++
T Consensus 212 Ln 213 (254)
T COG1121 212 LN 213 (254)
T ss_pred Ec
Confidence 73
No 142
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=23.94 E-value=3.6e+02 Score=23.16 Aligned_cols=63 Identities=19% Similarity=0.104 Sum_probs=33.1
Q ss_pred HHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee-cc-----CCceeeEEE
Q 022243 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-----NNAHYNSIA 107 (300)
Q Consensus 34 ~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~-~~-----~~~~yN~~~ 107 (300)
+.....|+|+|+.|-...... ....+...+...|-+.+++++..... .. +...+-.+.
T Consensus 163 r~l~~~ga~ii~~ps~~~~~~----------------~~~~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S~ 226 (280)
T cd07574 163 RALAEAGADLLLVPSCTDTRA----------------GYWRVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQAA 226 (280)
T ss_pred HHHHHcCCCEEEECCcCCccc----------------cHHHHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccccce
Confidence 444567999999985321110 00122233455667778888754321 11 123445566
Q ss_pred EEcCC
Q 022243 108 IIDAD 112 (300)
Q Consensus 108 vi~~~ 112 (300)
+++|.
T Consensus 227 i~~P~ 231 (280)
T cd07574 227 VYTPC 231 (280)
T ss_pred eecCC
Confidence 77775
No 143
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=23.94 E-value=3.8e+02 Score=22.33 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=36.7
Q ss_pred HHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeeccC-CceeeEEEEEcCCC
Q 022243 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADG 113 (300)
Q Consensus 35 ~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~~-~~~yN~~~vi~~~G 113 (300)
.|-..+++++++=|-+. |. ++.......+.|.+++++.+..|++-+-.... ..+.+..+++ .+|
T Consensus 127 ~al~~~p~lllLDEPt~-gL-------------D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l-~~G 191 (230)
T TIGR01184 127 RALSIRPKVLLLDEPFG-AL-------------DALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML-TNG 191 (230)
T ss_pred HHHHcCCCEEEEcCCCc-CC-------------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE-eCC
Confidence 34455778888888221 11 00011245566777777766666554422211 2456777888 478
Q ss_pred Cee
Q 022243 114 SDL 116 (300)
Q Consensus 114 ~i~ 116 (300)
+++
T Consensus 192 ~i~ 194 (230)
T TIGR01184 192 PAA 194 (230)
T ss_pred cEe
Confidence 875
No 144
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=23.59 E-value=1.6e+02 Score=26.45 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHH---cCcEEeeeee
Q 022243 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE---LGVVMPVSFF 95 (300)
Q Consensus 30 ~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~---~~v~iv~g~~ 95 (300)
.+.|+..++.-+|++|+...|++.|.... |-..... ..+.+.+.++.|.+.|-. .|+.+++++-
T Consensus 100 ~rair~iK~~~p~l~vi~DVcLc~YT~hG-HcGil~~-g~idND~Tl~~L~~~Al~~A~AGaDiVAPSd 166 (323)
T PRK09283 100 QRAIRAIKKAFPELGVITDVCLDEYTSHG-HCGILED-GYVDNDETLELLAKQALSQAEAGADIVAPSD 166 (323)
T ss_pred HHHHHHHHHhCCCcEEEEeeeccCCCCCC-ceecccC-CcCcCHHHHHHHHHHHHHHHHhCCCEEEccc
Confidence 44444444445899999999999885432 1112222 234456778888887754 4889888753
No 145
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.58 E-value=29 Score=29.38 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=36.6
Q ss_pred HHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCC
Q 022243 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADG 113 (300)
Q Consensus 34 ~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G 113 (300)
++|.+-.++++++=|=+ ...+|+......+.+.++.++|-|.||..... +..++-....++ ..|
T Consensus 161 ARalAv~PeVlLmDEPt--------------SALDPIsT~kIEeLi~eLk~~yTIviVTHnmq-QAaRvSD~taFf-~~G 224 (253)
T COG1117 161 ARALAVKPEVLLMDEPT--------------SALDPISTLKIEELITELKKKYTIVIVTHNMQ-QAARVSDYTAFF-YLG 224 (253)
T ss_pred HHHHhcCCcEEEecCcc--------------cccCchhHHHHHHHHHHHHhccEEEEEeCCHH-HHHHHhHhhhhh-ccc
Confidence 33445567888887722 12334444456677788888886666654321 112333333444 378
Q ss_pred Cee
Q 022243 114 SDL 116 (300)
Q Consensus 114 ~i~ 116 (300)
+++
T Consensus 225 ~Lv 227 (253)
T COG1117 225 ELV 227 (253)
T ss_pred EEE
Confidence 765
No 146
>PTZ00056 glutathione peroxidase; Provisional
Probab=23.44 E-value=4.2e+02 Score=21.75 Aligned_cols=15 Identities=7% Similarity=0.361 Sum_probs=11.2
Q ss_pred EEEEEcCCCCeeeee
Q 022243 105 SIAIIDADGSDLGLY 119 (300)
Q Consensus 105 ~~~vi~~~G~i~~~~ 119 (300)
+.++||++|+++.+|
T Consensus 147 ~tflID~~G~iv~~~ 161 (199)
T PTZ00056 147 GKFLVNKSGNVVAYF 161 (199)
T ss_pred EEEEECCCCcEEEEe
Confidence 578888888887543
No 147
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=23.15 E-value=2.9e+02 Score=24.68 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeee
Q 022243 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (300)
Q Consensus 22 ~~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~ 94 (300)
.+...+.+.+.++..++.|...|| |.+..|+. .-...|+++|++.|+.|+++.
T Consensus 33 ~~~~~~~~~~El~~~k~~Gg~tiV--d~T~~g~G------------------Rd~~~l~~is~~tGv~II~~T 85 (308)
T PF02126_consen 33 RDEDVEAAVAELKEFKAAGGRTIV--DATPIGLG------------------RDVEALREISRRTGVNIIAST 85 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEE--E--SGGGT------------------B-HHHHHHHHHHHT-EEEEEE
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEE--ecCCcccC------------------cCHHHHHHHHHHhCCeEEEeC
Confidence 445777888888888889999888 44433321 223778999999999999764
No 148
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.02 E-value=4.6e+02 Score=22.08 Aligned_cols=61 Identities=7% Similarity=-0.042 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCc-cchHHHhhcCCCCCChhHHHHHHHHHHcCcEEee
Q 022243 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQA-QREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (300)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~ 92 (300)
++..+.+.+.++.|+.-|+..|.++= |..+.. ...+..+.. -+.++.+.+.|+++|+.+.+
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~i~~~~----g~~~~~~~~~~~~~~~-----~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 80 EEFREGVALAIAYARALGCPQVNCLA----GKRPAGVSPEEARATL-----VENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECc----CCCCCCCCHHHHHHHH-----HHHHHHHHHHHHhcCCEEEE
Confidence 44457778889999999998886542 221111 011111111 14467777888899988665
No 149
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=23.00 E-value=2.9e+02 Score=23.82 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=38.0
Q ss_pred HHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECC
Q 022243 166 AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 244 (300)
Q Consensus 166 ~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p 244 (300)
..+.+...|+|+|+.|=.+-. .+ ...........+..|.++ ++++.-...- .. + +-.++-...+++|
T Consensus 31 ~i~~a~~~ga~lvvfPE~~l~-g~---~~~~~~~~~~l~~~ak~~~i~ii~G~~~~-~~-----~--~~~~~Ns~~~i~~ 98 (270)
T cd07571 31 LTRELADEKPDLVVWPETALP-FD---LQRDPDALARLARAARAVGAPLLTGAPRR-EP-----G--GGRYYNSALLLDP 98 (270)
T ss_pred HHhhcccCCCCEEEecCCcCC-cc---cccCHHHHHHHHHHHHhcCCeEEEeeeee-cc-----C--CCceEEEEEEECC
Confidence 344445668999999887422 11 111223334445566777 7766533211 00 0 0023345667889
Q ss_pred CCCccc
Q 022243 245 TGEIVA 250 (300)
Q Consensus 245 ~G~~i~ 250 (300)
+|+++.
T Consensus 99 ~G~i~~ 104 (270)
T cd07571 99 GGGILG 104 (270)
T ss_pred CCCCcC
Confidence 997653
No 150
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=22.66 E-value=81 Score=27.97 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=25.2
Q ss_pred cCCceeeEEEEEcCCCCeeeeeeeccCCC
Q 022243 98 ANNAHYNSIAIIDADGSDLGLYRKSHIPD 126 (300)
Q Consensus 98 ~~~~~yN~~~vi~~~G~i~~~~~K~~l~~ 126 (300)
++...||...|+|-+|..+.+|+|.++..
T Consensus 123 ~l~~~yrk~hlFD~d~~~~~ry~e~~~~~ 151 (298)
T KOG0806|consen 123 DGLAKYRKNHLFDTDGPGVIRYRESHLLS 151 (298)
T ss_pred chhheeeeeEEeccCCccceeeeeeeccC
Confidence 34578999999999999999999999865
No 151
>PTZ00261 acyltransferase; Provisional
Probab=22.65 E-value=1.2e+02 Score=27.65 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEeccccC
Q 022243 26 LATAERLVRAAHGKGANIILIQELFE 51 (300)
Q Consensus 26 ~~~~~~~i~~A~~~~~dliVfPE~~~ 51 (300)
.+.+.+.+++..++|-.++||||-.-
T Consensus 201 ~~~v~~~~~e~Lk~G~sLvIFPEGTR 226 (355)
T PTZ00261 201 QAQVQQAIDAHLRLGGSLAFFPEGAI 226 (355)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCcCC
Confidence 33455555555677889999999654
No 152
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=22.61 E-value=4.1e+02 Score=22.02 Aligned_cols=41 Identities=5% Similarity=0.098 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCCC
Q 022243 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGS 114 (300)
Q Consensus 74 ~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~ 114 (300)
.+.+.|.+++++.+..|++-+-..+.-...+..+++++++.
T Consensus 175 ~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~ 215 (225)
T PRK10247 175 NVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAG 215 (225)
T ss_pred HHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccc
Confidence 34466667777656655544322111123677778865543
No 153
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=22.39 E-value=4.1e+02 Score=21.97 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCCCee
Q 022243 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (300)
Q Consensus 74 ~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~ 116 (300)
...+.|.+++++.+..|++-+-....-...+..+++ .+|+++
T Consensus 184 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l-~~g~i~ 225 (228)
T PRK10584 184 KIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRL-VNGQLQ 225 (228)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCEEE
Confidence 445667777776666555443211111224566777 477653
No 154
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.27 E-value=2.1e+02 Score=24.87 Aligned_cols=31 Identities=6% Similarity=-0.047 Sum_probs=26.7
Q ss_pred EEEEeeccCCCHHHHHHHHHcCCcEEEeecc
Q 022243 153 IGVAICWDQWFPEAARAMVLQGAEILFYPTA 183 (300)
Q Consensus 153 ig~~IC~D~~~~~~~~~~~~~gadlii~ps~ 183 (300)
.=+++.+-+..++..+.+...|||-+++-|+
T Consensus 203 ~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 203 KPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred CCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 3455788888999999999999999999987
No 155
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.21 E-value=1.3e+02 Score=26.26 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=37.4
Q ss_pred HHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCC
Q 022243 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADG 113 (300)
Q Consensus 34 ~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G 113 (300)
..|-..+++++++=|-+.. . ++.....+.+.|.+++++.+..|++-+-....-...+..+++ .+|
T Consensus 152 Aral~~~p~lLlLDEPt~~-L-------------D~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l-~~G 216 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSM-L-------------DPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVM-KNG 216 (279)
T ss_pred HHHHHcCCCEEEEECCccc-C-------------CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECC
Confidence 3344557788888883211 0 000112456677778777676666543221111356777888 578
Q ss_pred Cee
Q 022243 114 SDL 116 (300)
Q Consensus 114 ~i~ 116 (300)
++.
T Consensus 217 ~i~ 219 (279)
T PRK13650 217 QVE 219 (279)
T ss_pred EEE
Confidence 875
No 156
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=21.99 E-value=1.2e+02 Score=27.42 Aligned_cols=69 Identities=16% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeeccC-CceeeEEEEEcCC
Q 022243 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDAD 112 (300)
Q Consensus 34 ~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~~-~~~yN~~~vi~~~ 112 (300)
.+|-..+++++++=|-+.. . ++......++.|.++.++.+++|++-+-+.+. ..+.+..+++ .+
T Consensus 152 ARAL~~~P~iLLlDEPts~-L-------------D~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl-~~ 216 (343)
T TIGR02314 152 ARALASNPKVLLCDEATSA-L-------------DPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVI-SN 216 (343)
T ss_pred HHHHHhCCCEEEEeCCccc-C-------------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-EC
Confidence 3344557788888773311 1 11111255677888888878877765432221 2467788888 48
Q ss_pred CCeee
Q 022243 113 GSDLG 117 (300)
Q Consensus 113 G~i~~ 117 (300)
|+++.
T Consensus 217 G~iv~ 221 (343)
T TIGR02314 217 GELIE 221 (343)
T ss_pred CEEEE
Confidence 88763
No 157
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=21.94 E-value=1.1e+02 Score=23.56 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=13.4
Q ss_pred eEEEEEcCCCCeeeeee
Q 022243 104 NSIAIIDADGSDLGLYR 120 (300)
Q Consensus 104 N~~~vi~~~G~i~~~~~ 120 (300)
.+.++||++|+++..|.
T Consensus 121 ~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 121 RISFLIDADGKIEHVFD 137 (154)
T ss_pred eEEEEECCCCEEEEEEc
Confidence 56799999999876654
No 158
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=21.92 E-value=1.3e+02 Score=25.81 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=44.8
Q ss_pred hCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeee-eccCC--ceeeEEEEEcCCCC
Q 022243 38 GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANN--AHYNSIAIIDADGS 114 (300)
Q Consensus 38 ~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~-~~~~~--~~yN~~~vi~~~G~ 114 (300)
+.||.++.||-.+..-. -...|.-.++.-|-+.+++|++... -+++. .-|--+.++||=|.
T Consensus 184 ~~gA~iLtyPSAFT~~T----------------G~AHWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWGt 247 (295)
T KOG0807|consen 184 KMGAQILTYPSAFTIKT----------------GEAHWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWGT 247 (295)
T ss_pred HcCCcEEeccchhhhcc----------------cHHHHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchhh
Confidence 56999999998653210 0125556677777888999997642 22222 34667788899999
Q ss_pred eeeeeee
Q 022243 115 DLGLYRK 121 (300)
Q Consensus 115 i~~~~~K 121 (300)
+++++..
T Consensus 248 Vva~~se 254 (295)
T KOG0807|consen 248 VVARCSE 254 (295)
T ss_pred hheecCC
Confidence 8876553
No 159
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.74 E-value=4.3e+02 Score=21.61 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHcCcEEeeeeeecc-CCceeeEEEEEcCCCCee
Q 022243 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (300)
Q Consensus 74 ~~~~~l~~~a~~~~v~iv~g~~~~~-~~~~yN~~~vi~~~G~i~ 116 (300)
...+.|.+++++.+..|++-+-... -..+.+..+++ .+|+++
T Consensus 169 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~ 211 (214)
T cd03297 169 QLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVM-EDGRLQ 211 (214)
T ss_pred HHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEE-ECCEEE
Confidence 4556677777765666555432211 12355667777 477754
No 160
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.71 E-value=4.1e+02 Score=22.11 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHcCcEEeeeeeeccC-CceeeEEEEEcCCCCee
Q 022243 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (300)
Q Consensus 74 ~~~~~l~~~a~~~~v~iv~g~~~~~~-~~~yN~~~vi~~~G~i~ 116 (300)
...+.|.+++++.+..|++-.-.... ..+.+..+++ .+|+++
T Consensus 182 ~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l-~~G~i~ 224 (241)
T cd03256 182 QVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGL-KDGRIV 224 (241)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 44566777776656666554322211 2356778888 478865
No 161
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.54 E-value=3.9e+02 Score=23.15 Aligned_cols=67 Identities=12% Similarity=0.198 Sum_probs=35.8
Q ss_pred HHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCCC
Q 022243 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGS 114 (300)
Q Consensus 35 ~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~ 114 (300)
.|...+++++++=|-... . ... ....+.+.|.+++++.+..|++-+-....-...+..+++ .+|+
T Consensus 153 ral~~~p~lllLDEPt~g-L-----D~~--------~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l-~~G~ 217 (279)
T PRK13635 153 GVLALQPDIIILDEATSM-L-----DPR--------GRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVM-NKGE 217 (279)
T ss_pred HHHHcCCCEEEEeCCccc-C-----CHH--------HHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEE-ECCE
Confidence 344557788888883211 0 000 112455677777777676666543211111236777777 4787
Q ss_pred ee
Q 022243 115 DL 116 (300)
Q Consensus 115 i~ 116 (300)
++
T Consensus 218 i~ 219 (279)
T PRK13635 218 IL 219 (279)
T ss_pred EE
Confidence 64
No 162
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=21.48 E-value=4.9e+02 Score=23.58 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEecc----ccCCC------ccC---Cc--cchHHHhhcCCCCCChhHHHHHHHHHH
Q 022243 21 DVSTNLATAERLVRAAHGKGANIILIQE----LFEGY------YFC---QA--QREDFFQRAKPYKDHPTILKMQELAKE 85 (300)
Q Consensus 21 ~~~~n~~~~~~~i~~A~~~~~dliVfPE----~~~~g------~~~---~~--~~~~~~~~~~~~~~~~~~~~l~~~a~~ 85 (300)
|-...+++..++|+.|++.|||.|=|-= -.++. |.. .+ .-.+..+.++. ..+|...|.+.|++
T Consensus 24 NHnG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~--p~e~~~~Lke~a~~ 101 (347)
T COG2089 24 NHNGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAET--PLEWHAQLKEYARK 101 (347)
T ss_pred cccCcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 3445567888999999999999987644 23331 110 00 11233444432 24788899999999
Q ss_pred cCcEEeee
Q 022243 86 LGVVMPVS 93 (300)
Q Consensus 86 ~~v~iv~g 93 (300)
.|+.+..+
T Consensus 102 ~Gi~~~SS 109 (347)
T COG2089 102 RGIIFFSS 109 (347)
T ss_pred cCeEEEec
Confidence 99887654
No 163
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=21.32 E-value=4.6e+02 Score=21.43 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCCC
Q 022243 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGS 114 (300)
Q Consensus 74 ~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~ 114 (300)
...+.|.+++++.+..|++-+-....-...+..+++ .+|+
T Consensus 178 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l-~~G~ 217 (218)
T cd03255 178 EVMELLRELNKEAGTTIVVVTHDPELAEYADRIIEL-RDGK 217 (218)
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEe-eCCc
Confidence 455667777665555555443221111256666777 3564
No 164
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=21.04 E-value=7.6e+02 Score=26.05 Aligned_cols=102 Identities=12% Similarity=0.155 Sum_probs=53.9
Q ss_pred cCCCCeeeeeeeccCCCCCCCCcceeecCCCCCceeeecCCccEEEEeeccCCCHHHHHHHHHcCCcEEEeeccCCCCCC
Q 022243 110 DADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQ 189 (300)
Q Consensus 110 ~~~G~i~~~~~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~~~~~~~~~~~gadlii~ps~~~~~~~ 189 (300)
+++|.-+..-.-.|.|. -+|.....||.. +..+.++.+|+|.+=---.+ ........++++|||= -|. |.
T Consensus 310 g~HGTHVAgIa~anhpe---~p~~NGvAPgaq-IvSl~IGD~RLgsMETgtal-tRA~~~v~e~~vDiIN-mSy-GE--- 379 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPE---TPELNGVAPGAQ-IVSLKIGDGRLGSMETGTAL-TRAMIEVIEHNVDIIN-MSY-GE--- 379 (1304)
T ss_pred CCCcceehhhhccCCCC---CccccCCCCCCE-EEEEEecCccccccccchHH-HHHHHHHHHhcCCEEE-ecc-Cc---
Confidence 45565444433333333 357788999986 67788899999985222211 2223334568899764 333 11
Q ss_pred CCCCCcHHHHHHHhhhhhhccceEEEecCCCCc
Q 022243 190 DDGLDSRDHWRRVMQGHAGANVPLVASNRIGKE 222 (300)
Q Consensus 190 ~~~~~~~~~~~~~~~~~A~e~~~vv~~n~~G~~ 222 (300)
+..+-...+.-.+++..... .-||+++.+|..
T Consensus 380 ~a~~pn~GRviEl~~e~vnK-r~vI~VsSAGN~ 411 (1304)
T KOG1114|consen 380 DAHLPNSGRVIELLRELVNK-RGVIYVSSAGNN 411 (1304)
T ss_pred cCCCCCcchHHHHHHHHhhh-ccEEEEEeCCCC
Confidence 11122345555555532222 445555555543
No 165
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.84 E-value=4.4e+02 Score=22.77 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=38.0
Q ss_pred HHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeeccC-CceeeEEEEEcC
Q 022243 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA 111 (300)
Q Consensus 33 i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~~-~~~yN~~~vi~~ 111 (300)
+..|...+++++++=|-+.. . ++.....+.+.|.+++++.+.+|++-+-.... ....+..+++ .
T Consensus 148 laraL~~~p~llilDEPt~g-L-------------D~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l-~ 212 (277)
T PRK13652 148 IAGVIAMEPQVLVLDEPTAG-L-------------DPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVM-D 212 (277)
T ss_pred HHHHHHcCCCEEEEeCCccc-C-------------CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-E
Confidence 33444557788888773211 0 00011245567777777667766655422221 2456777888 5
Q ss_pred CCCee
Q 022243 112 DGSDL 116 (300)
Q Consensus 112 ~G~i~ 116 (300)
+|+++
T Consensus 213 ~G~i~ 217 (277)
T PRK13652 213 KGRIV 217 (277)
T ss_pred CCeEE
Confidence 78875
No 166
>PHA01633 putative glycosyl transferase group 1
Probab=20.69 E-value=1.7e+02 Score=26.55 Aligned_cols=78 Identities=6% Similarity=0.055 Sum_probs=39.4
Q ss_pred cCCcEEEeeccCCCCCCCCCCCcHHHHHHHhhhhhhcc-ceEEEecCCCCccccccCCCcceeeccceEEECCCCCcccc
Q 022243 173 QGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGAN-VPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAA 251 (300)
Q Consensus 173 ~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~~A~e~-~~vv~~n~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~~i~~ 251 (300)
..+|+++.||.+... + +...-|... ++||.++..|... +...|...++.++.-....
T Consensus 222 ~~aDifV~PS~~Egf-------G------lvlLEAMA~G~PVVas~~~~l~E---------i~g~~~~~Li~~~~v~~~~ 279 (335)
T PHA01633 222 GAMDFTIVPSGTEGF-------G------MPVLESMAMGTPVIHQLMPPLDE---------FTSWQWNLLIKSSKVEEYY 279 (335)
T ss_pred HhCCEEEECCccccC-------C------HHHHHHHHcCCCEEEccCCCcee---------ecCCccceeeCCCCHHHhc
Confidence 459999999985331 1 112234556 8888877654322 2222355555322221111
Q ss_pred cCCCCCcEEEEEechhhHHhh
Q 022243 252 ADDKEEAVLVAQFDLDKLKSK 272 (300)
Q Consensus 252 ~~~~~~~~~~~~id~~~~~~~ 272 (300)
.+....++.+-..|.+.+...
T Consensus 280 ~~~~g~g~~~~~~d~~~la~a 300 (335)
T PHA01633 280 DKEHGQKWKIHKFQIEDMANA 300 (335)
T ss_pred CcccCceeeecCCCHHHHHHH
Confidence 112223555555666666554
No 167
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.68 E-value=4.4e+02 Score=23.62 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEee
Q 022243 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (300)
Q Consensus 23 ~~n~~~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~ 92 (300)
..|++.+.++++...+++..+.=++=-.+|-+.......++.+.+ .+.++.+.++|+++++.+.+
T Consensus 48 ~~Nl~~l~~~L~~n~~~~I~f~RisS~l~P~ash~~~~~~~~~~~-----~~~l~~iG~~a~~~~iRLS~ 112 (312)
T TIGR00629 48 KANLRDTMKTLHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVTFA-----QKELREIGELAKTHQHRLTF 112 (312)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEecCccccCcCcCchhhhhHHHHH-----HHHHHHHHHHHHHcCeEEEE
Confidence 467888888888888888877665543333332222112222222 25678899999999987653
No 168
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=20.63 E-value=2.6e+02 Score=21.66 Aligned_cols=48 Identities=21% Similarity=0.145 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeee
Q 022243 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (300)
Q Consensus 28 ~~~~~i~~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~ 96 (300)
.+.+++++|++.|.+.|.+=+.... .....+.+.+++.++.++.|.-.
T Consensus 17 ~~~e~v~~A~~~Gl~~i~iTDH~~~---------------------~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAITDHNNF---------------------AGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SHHHHHHHHHHTTESEEEEEEETTT---------------------TTHHHHHHHHHHTTSEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEcCCccc---------------------ccchHHHHHHHhcCCceEEeEee
Confidence 5677789999999999999997211 11234556677789999999743
No 169
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.57 E-value=4.3e+02 Score=22.90 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=36.0
Q ss_pred HHHhCCCeEEEeccccCCCccCCccchHHHhhcCCCCCChhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCCC
Q 022243 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGS 114 (300)
Q Consensus 35 ~A~~~~~dliVfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~ 114 (300)
.|...+++++++=|-+..- | . .......+.|.+++++.+..|++-+-....-...+..+++ .+|+
T Consensus 156 ral~~~P~llllDEPt~gL----D--~--------~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l-~~G~ 220 (282)
T PRK13640 156 GILAVEPKIIILDESTSML----D--P--------AGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVL-DDGK 220 (282)
T ss_pred HHHHcCCCEEEEECCcccC----C--H--------HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCE
Confidence 3445577888887732210 0 0 0012455677777776666665543221111346777888 5888
Q ss_pred ee
Q 022243 115 DL 116 (300)
Q Consensus 115 i~ 116 (300)
++
T Consensus 221 i~ 222 (282)
T PRK13640 221 LL 222 (282)
T ss_pred EE
Confidence 75
No 170
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=20.30 E-value=5.4e+02 Score=22.21 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHcCcEEeeeeeeccCCceeeEEEEEcCCCCee
Q 022243 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (300)
Q Consensus 74 ~~~~~l~~~a~~~~v~iv~g~~~~~~~~~yN~~~vi~~~G~i~ 116 (300)
...+.|.+++++.+..|++-+-....-...+..+++ .+|+++
T Consensus 182 ~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l-~~G~i~ 223 (280)
T PRK13633 182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVM-DSGKVV 223 (280)
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEE-ECCEEE
Confidence 455677777776676666543221111236677778 478765
Done!