BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022244
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WNB|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In
Complex With Disaccharide And Cmp
pdb|2WNF|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In
Complex With Gal-Beta-1-3galnac-Ortho-Nitrophenol
Length = 298
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 173 RCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDK 232
RCAV+GNSG+L ++ +G +ID +D V+R N AP + + VG K+T + S + L +
Sbjct: 99 RCAVVGNSGNLKESYYGPQIDSHDFVLRXNKAPTEGFEADVGSKTTHHFVYPESFRELAQ 158
Query: 233 VV 234
V
Sbjct: 159 EV 160
>pdb|2WML|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase
Length = 298
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 173 RCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDK 232
RCAV+GNSG+L ++ +G +ID +D V+R N AP + + VG K+T + S + L +
Sbjct: 99 RCAVVGNSGNLKESYYGPQIDSHDFVLRXNKAPTEGFEADVGSKTTHHFVYPESFRELAQ 158
Query: 233 VV 234
V
Sbjct: 159 EV 160
>pdb|4EIV|A Chain A, 1.37 Angstrom Resolution Crystal Structure Of Apo-Form Of
A Putative Deoxyribose-Phosphate Aldolase From
Toxoplasma Gondii Me49
pdb|4EIV|B Chain B, 1.37 Angstrom Resolution Crystal Structure Of Apo-Form Of
A Putative Deoxyribose-Phosphate Aldolase From
Toxoplasma Gondii Me49
Length = 297
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 44/163 (26%)
Query: 98 FNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYA----WRRINKGVLLNRCQNKTLCM 153
+C AV E T+ + E + AL +G +E WRR+N+ V + + L
Sbjct: 84 IKVCAAVNFPEGTGTPDTV-SLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVS 142
Query: 154 EKLSLVLPETPPYSPRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYV 213
E +V P+T L G E+ G D++ R A ++ D++
Sbjct: 143 EVKKVVGPKT-------------------LKVVLSGGELQGGDIISRAAVAALEGGADFL 183
Query: 214 GKKSTFRLLNRGSAKALDKVVELDGMNIVHLLLYVLHITSCAL 256
S G+ H ++ +H+ S AL
Sbjct: 184 QTSS--------------------GLGATHATMFTVHLISIAL 206
>pdb|3QYQ|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
pdb|3QYQ|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
pdb|3QYQ|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
pdb|3QYQ|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
Length = 293
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 44/163 (26%)
Query: 98 FNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYA----WRRINKGVLLNRCQNKTLCM 153
+C AV E T+ + E + AL +G +E WRR+N+ V + + L
Sbjct: 85 IKVCAAVNFPEGTGTPDTV-SLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVS 143
Query: 154 EKLSLVLPETPPYSPRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYV 213
E +V P+T L G E+ G D++ R A ++ D++
Sbjct: 144 EVKKVVGPKT-------------------LKVVLSGGELQGGDIISRAAVAALEGGADFL 184
Query: 214 GKKSTFRLLNRGSAKALDKVVELDGMNIVHLLLYVLHITSCAL 256
S G+ H ++ +H+ S AL
Sbjct: 185 QTSS--------------------GLGATHATMFTVHLISIAL 207
>pdb|1BF5|A Chain A, Tyrosine Phosphorylated Stat-1DNA COMPLEX
Length = 575
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 88 TGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAW 134
T EL SLSF+ LC+ + S ++ + LP+GW W
Sbjct: 292 TEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILW 338
>pdb|1YVL|A Chain A, Structure Of Unphosphorylated Stat1
pdb|1YVL|B Chain B, Structure Of Unphosphorylated Stat1
Length = 683
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 88 TGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAW 134
T EL SLSF+ LC+ + S ++ + LP+GW W
Sbjct: 427 TEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILW 473
>pdb|3S6P|A Chain A, Crystal Structure Of Helicoverpa Armigera Stunt Virus
pdb|3S6P|B Chain B, Crystal Structure Of Helicoverpa Armigera Stunt Virus
pdb|3S6P|C Chain C, Crystal Structure Of Helicoverpa Armigera Stunt Virus
pdb|3S6P|D Chain D, Crystal Structure Of Helicoverpa Armigera Stunt Virus
Length = 575
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 95 SFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWE 130
SFD N+ AVA + + +S +I+TK Y GWE
Sbjct: 502 SFDQNMSTAVAHFRSLSHSCSIVTKTY-----QGWE 532
>pdb|2ZS6|B Chain B, Ha3 Subcomponent Of Botulinum Type C Progenitor Toxin
pdb|4EN6|B Chain B, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-3-Sialyllactose
pdb|4EN7|B Chain B, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-3-Sialyllactosamine
pdb|4EN8|B Chain B, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-6-Sialyllactose
pdb|4EN9|B Chain B, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-6-Sialyllactosamine
Length = 420
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 187 RFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDKVVELDGMNIV 242
R + I+GY+++ I NY+D + LLN + KV EL+ NI+
Sbjct: 364 RLTESINGYNLIT------INNYSDLLNNVEPISLLNGATYIFRVKVTELNNYNII 413
>pdb|2ZOE|B Chain B, Ha3 Subcomponent Of Clostridium Botulinum Type C
Progenitor Toxin, Complex With N-Acetylneuramic Acid
Length = 420
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 187 RFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDKVVELDGMNIV 242
R + I+GY+++ I NY+D + LLN + KV EL+ NI+
Sbjct: 364 RLTESINGYNLIT------INNYSDLLNNVEPISLLNGATYIFRVKVTELNNYNII 413
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,586,894
Number of Sequences: 62578
Number of extensions: 362837
Number of successful extensions: 712
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 708
Number of HSP's gapped (non-prelim): 13
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)