Query 022244
Match_columns 300
No_of_seqs 241 out of 553
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 16:17:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wnf_A CMP-N-acetylneuraminate 100.0 5.7E-36 2E-40 281.0 2.1 196 64-299 14-217 (298)
2 2p2v_A Alpha-2,3-sialyltransfe 98.8 4.5E-09 1.5E-13 98.6 4.7 58 169-229 17-75 (288)
3 1ro7_A Alpha-2,3/8-sialyltrans 98.7 1.2E-08 4.3E-13 93.8 5.0 55 172-229 2-57 (259)
4 2wqq_A Alpha-2,3-/2,8-sialyltr 98.5 5E-08 1.7E-12 91.3 4.0 55 172-229 2-57 (291)
5 3qkg_A Protein AMBP; beta barr 10.2 1.3E+02 0.0046 24.9 2.3 35 56-90 153-193 (193)
6 2ook_A Hypothetical protein; s 8.3 1.3E+02 0.0045 23.7 1.4 17 169-185 83-99 (127)
7 2v40_A Adenylosuccinate synthe 8.2 1.2E+02 0.0042 30.0 1.3 65 157-227 20-90 (459)
8 2es9_A Putative cytoplasmic pr 6.4 1.3E+02 0.0045 24.1 0.5 18 276-295 79-96 (115)
9 1ei0_A P8MTCP1; helix-turn-hel 6.3 1.8E+02 0.0063 18.9 1.1 22 46-73 7-28 (38)
10 2q3l_A Uncharacterized protein 6.2 1.7E+02 0.0057 23.0 1.0 15 169-183 83-97 (126)
No 1
>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A
Probab=100.00 E-value=5.7e-36 Score=281.00 Aligned_cols=196 Identities=24% Similarity=0.303 Sum_probs=135.2
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHhhcccccccHHHhhhCCCCchhhhHHHhhhcccc
Q 022244 64 SGEDYCQVKINFPKDTVPKWRDPNTGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAWRRINKGVLL 143 (300)
Q Consensus 64 ~~~~~C~~~l~~~~~~~~~w~~~~f~~~e~l~~~f~~~~~vl~w~~~r~~~t~~t~e~~d~lp~g~~~~~w~~i~s~l~l 143 (300)
+..+.|+.|+..+.. |.|++.+|..- . ..++|++... ++.. .-..|.+++...
T Consensus 14 ~~~~~c~~~~~~~~~--s~~f~~~f~~~----------~-----------~~~lt~~~~~-~~~~-~~~~w~~l~~~~-- 66 (298)
T 2wnf_A 14 YRPCTCTRCIEEQRV--SAWFDERFNRS----------M-----------QPLLTAKNAH-LEED-TYKWWLRLQREK-- 66 (298)
T ss_dssp --CCSSSSCTTCSSS--CHHHHHHCCTT----------C-----------CCBCCTTTCC-CCHH-HHHHHHHHHCCS--
T ss_pred CCCCCCCcccccccc--CHHHHhHhCCC----------C-----------CceeccCcCC-CCHH-HHHHHHhccccc--
Confidence 468899999998654 88877776643 1 1234433311 1110 012367776532
Q ss_pred ccccchhHHHHHhhccCCCCCC-CCC---CCccceEEEcCCcccCCCCCCCcccccceeeccCCCcccCcccCcCccceE
Q 022244 144 NRCQNKTLCMEKLSLVLPETPP-YSP---RQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTF 219 (300)
Q Consensus 144 ~~~~n~~~~~~~l~~~lP~~~p-~~~---~~c~rCAVVGNsGiL~gS~~G~eID~~D~ViR~N~aP~~gfe~DVG~KTt~ 219 (300)
...+...+.+++++++|+.+| +.. .+|++||||||||||+||+||+|||+||||||||.||++|||+|||+|||+
T Consensus 67 -~~~~~~~v~~~l~~~lP~~~~~~~~~~~~~~~~CAVVGNsGiL~~S~~G~eIDs~D~ViR~N~aP~~gye~DVG~KTt~ 145 (298)
T 2wnf_A 67 -QPNNLNDTIRELFQVVPGNVDPLLEKRLVSCRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPTEGFEADVGSKTTH 145 (298)
T ss_dssp -SCCCHHHHHHHHTTTSCSCCCTTTTGGGCSCCEEEEECCBGGGTTCCCHHHHHTSSEEEEETTCCCTTCHHHHCSCCSE
T ss_pred -ccccHHHHHHHHHHhCCCccccccccccCCCCeEEEECCccccCCCCccccccchhheeccCcCCcCcccccCccCcee
Confidence 334667788999999999887 765 799999999999999999999999999999999999999999999999999
Q ss_pred EEeeccchhcccccccccccchhhhhhhhhhhhccc--ccceeeecccceeEEEeehhhhhhccccceeeeeCcceee--
Q 022244 220 RLLNRGSAKALDKVVELDGMNIVHLLLYVLHITSCA--LNISYTVETRKEVLIVKTTIHDIMSKMIQVCTLFSKYFFV-- 295 (300)
Q Consensus 220 ~~~~p~s~~~L~~~~s~~~~~~~~~~l~~fw~~sa~--~~i~~t~~t~k~~lrv~~~l~~~~~~~~qkv~i~NP~yl~-- 295 (300)
+++||+++..+.+.++++-. .....+..|+.++. +.+..++... ...+.. ++ +++.|+||.|++
T Consensus 146 ~~~n~~s~~~~~~~~~~v~~--~~~~~~~~w~~~~~~~~~~~~~~~~~------~~~~~~--~~--~~v~i~~P~~~~~~ 213 (298)
T 2wnf_A 146 HFVYPESFRELAQEVSMILV--PFKTTDLEWVISATTTGRISHTYVPV------PAKIKV--KK--EKILIYHPAFIKYV 213 (298)
T ss_dssp EEEBTTBCCCCCTTCEEEEC--CSSHHHHHHHHHHTTTCCCCBSSSBC------CSCCCC--CG--GGEEEBCHHHHHHH
T ss_pred EEeccccccccCCCceEEEe--ecCccchhhhhHhhcCCcccchhhhh------hHHhhc--cC--CeEEEeCHHHHHHH
Confidence 99999999887776554311 11345667765543 2221111111 111111 23 789999999987
Q ss_pred eccC
Q 022244 296 SDRF 299 (300)
Q Consensus 296 ~~rf 299 (300)
.++|
T Consensus 214 ~~~w 217 (298)
T 2wnf_A 214 FDRW 217 (298)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4444
No 2
>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A
Probab=98.75 E-value=4.5e-09 Score=98.60 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=52.6
Q ss_pred CCccceEEEcCCcccCCCCCCCcccccceeeccCCCccc-CcccCcCccceEEEeeccchhc
Q 022244 169 RQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQ-NYTDYVGKKSTFRLLNRGSAKA 229 (300)
Q Consensus 169 ~~c~rCAVVGNsGiL~gS~~G~eID~~D~ViR~N~aP~~-gfe~DVG~KTt~~~~~p~s~~~ 229 (300)
..-++|+||||||+|+++. |.+||++|+|||||.++.. .| ++|++|.+.+++|+....
T Consensus 17 ~~~~~c~IvGNGPSL~~~~-~~~i~~~~~v~rvN~~~~~~~~--~~g~~~~yv~~dp~~~~~ 75 (288)
T 2p2v_A 17 KNMQNIIIAGNGPSLKNIN-YKRLPREYDVFRCNQFYFEDKY--YLGKKIKAVFFNPGVFLQ 75 (288)
T ss_dssp TTCCEEEEECCSGGGGGCC-GGGSCSSCEEEEETTGGGCSBC--TTCSEESEEEECGGGHHH
T ss_pred CCCCeEEEEecChhhcCCC-chhhccCCEEEEEcChHhcCcc--cccccceEEEECcHHHHH
Confidence 3467999999999999998 9999999999999999996 57 499999999999988765
No 3
>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} SCOP: c.130.1.1 PDB: 1ro8_A* 2drj_A* 2x62_A* 2x61_A* 2x63_A*
Probab=98.68 E-value=1.2e-08 Score=93.83 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=47.3
Q ss_pred cceEEEcCCcccCCCCCCCcccccceeeccCCCcccC-cccCcCccceEEEeeccchhc
Q 022244 172 GRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQN-YTDYVGKKSTFRLLNRGSAKA 229 (300)
Q Consensus 172 ~rCAVVGNsGiL~gS~~G~eID~~D~ViR~N~aP~~g-fe~DVG~KTt~~~~~p~s~~~ 229 (300)
++|+||||||+|+...++. |++.+.|||||+++... | |||+||++.+++|+.+..
T Consensus 2 k~c~ivGNGpsL~~id~~~-l~~~~~v~r~N~~~~~d~y--~VG~kt~~v~~NPsv~~~ 57 (259)
T 1ro7_A 2 KKVIIAGNGPSLKEIDYSR-LPNDFDVFRCNQFYFEDKY--YLGKKCKAVFYNPSLFFE 57 (259)
T ss_dssp CEEEEECCSGGGGCCCTTS-CCSSEEEEEETTGGGCSEE--TTCSEEEEEEECGGGHHH
T ss_pred ceEEEEeCcHHHhhhhhhh-hccCCeEEEEeChhhcCcc--ccccccceEEECcHHHHH
Confidence 5899999999999888885 77777799999997753 5 599999999999988754
No 4
>2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransfer; HET: CSF; 2.25A {Campylobacter jejuni}
Probab=98.51 E-value=5e-08 Score=91.32 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=49.7
Q ss_pred cceEEEcCCcccCCCCCCCcccccceeeccCCCccc-CcccCcCccceEEEeeccchhc
Q 022244 172 GRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQ-NYTDYVGKKSTFRLLNRGSAKA 229 (300)
Q Consensus 172 ~rCAVVGNsGiL~gS~~G~eID~~D~ViR~N~aP~~-gfe~DVG~KTt~~~~~p~s~~~ 229 (300)
++|+||||||+|.++. +.+||++|+|||||.++.. .| ++|++|.+.+++|+....
T Consensus 2 ~~c~IvGNGpSL~~~~-~~~i~~~~~vi~vN~~~~~~~~--~~g~~~~yv~~dp~~~~~ 57 (291)
T 2wqq_A 2 KKVIIAGNGPSLKEID-YSRLPNDFDVFRCNQFYFEDKY--YLGKKCKAVFYNPSLFFE 57 (291)
T ss_dssp CEEEEECCSGGGGCCC-GGGCCSSEEEEEETTGGGCSEE--TTCSEEEEEEECGGGHHH
T ss_pred CcEEEEeCchhhccCc-hhhhccCCeEEEEcCccccccc--ccccCccEEEEchHHHHH
Confidence 5899999999999997 9999999999999999995 46 499999999999986654
No 5
>3qkg_A Protein AMBP; beta barrel, binding protein, bound chromophore, human plasm system; 2.30A {Homo sapiens}
Probab=10.19 E-value=1.3e+02 Score=24.95 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=10.2
Q ss_pred CCCcccc---ccccccccccccCCC---CCCCCCCCCCCCC
Q 022244 56 NGLGLEA---VSGEDYCQVKINFPK---DTVPKWRDPNTGE 90 (300)
Q Consensus 56 ~g~~~~~---~~~~~~C~~~l~~~~---~~~~~w~~~~f~~ 90 (300)
.|+.... ..+.+.|+.--+.+. -+-|.|.||+|.+
T Consensus 153 ~G~~~~~i~~~~q~~~C~~~~~~~~~~~~~~~~~~~~~~~~ 193 (193)
T 3qkg_A 153 VGIPEDSIFTMADRGECVPGEQEPEPILIPRSAWSHPQFEK 193 (193)
T ss_dssp TTCCSTTEEECBCCCCCCC----------------------
T ss_pred cCCCHHHEEECCCCCccCCcccccCccccccccccCccccC
Confidence 5665443 346689988777666 3568999999963
No 6
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=8.31 E-value=1.3e+02 Score=23.65 Aligned_cols=17 Identities=29% Similarity=0.359 Sum_probs=13.7
Q ss_pred CCccceEEEcCCcccCC
Q 022244 169 RQFGRCAVIGNSGDLLK 185 (300)
Q Consensus 169 ~~c~rCAVVGNsGiL~g 185 (300)
..+.||||||+..-...
T Consensus 83 ~~~~RiAvV~d~~W~~~ 99 (127)
T 2ook_A 83 SEFERVAILGNKDWQEW 99 (127)
T ss_dssp CCEEEEEEECCSSCCTT
T ss_pred hcCCEEEEEcChHHHHH
Confidence 46899999999986643
No 7
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis, metal- binding, purine metabolism, nucleotide-binding, GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens} PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A* 1mf0_A* 1mf1_A* 2dgn_A*
Probab=8.15 E-value=1.2e+02 Score=30.04 Aligned_cols=65 Identities=28% Similarity=0.312 Sum_probs=37.1
Q ss_pred hccCCCCCCCCCCCccce-EEEcCCcccCCCCCCCccc----ccceeeccCCCcccCcccCc-CccceEEEeeccch
Q 022244 157 SLVLPETPPYSPRQFGRC-AVIGNSGDLLKTRFGKEID----GYDVVIRENGAPIQNYTDYV-GKKSTFRLLNRGSA 227 (300)
Q Consensus 157 ~~~lP~~~p~~~~~c~rC-AVVGNsGiL~gS~~G~eID----~~D~ViR~N~aP~~gfe~DV-G~KTt~~~~~p~s~ 227 (300)
|+-.|...|+. .++ +|||-..-= .+-|+-+| .+|+|.|+|+.+-.|+.--+ |.|..++.+-..++
T Consensus 20 ~~~~~~~~~~~----~~v~vVvG~QWGD--EGKGKivD~La~~~dvVvR~qGG~NAGHTVv~~g~k~~lhliPSGil 90 (459)
T 2v40_A 20 FQSMPRARPGG----NRVTVVLGAQWGD--EGKGKVVDLLAQDADIVCRCQGGNNAGHTVVVDSVEYDFHLLPSGII 90 (459)
T ss_dssp ---------CC----CCEEEEEESSSSC--SSHHHHHHHHHTTCSEEEECSBCSCCCEEEEETTEEEEESSSCGGGG
T ss_pred ecCCCccCCCC----eeEEEEEecCcCC--CCCceEEEEeccCCCEEeecCccCCCCcEEEECCEEEEEEccCcccc
Confidence 44556655553 124 788765543 34466665 68999999999888877444 55777776655544
No 8
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=6.41 E-value=1.3e+02 Score=24.09 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=13.8
Q ss_pred hhhhccccceeeeeCcceee
Q 022244 276 HDIMSKMIQVCTLFSKYFFV 295 (300)
Q Consensus 276 ~~~~~~~~qkv~i~NP~yl~ 295 (300)
+++.+- ++++|-||+||-
T Consensus 79 ek~esG--er~vIKnPEyFs 96 (115)
T 2es9_A 79 EKVASG--NRILIKNPEYFS 96 (115)
T ss_dssp HHHHTT--CCCCCSSGGGSC
T ss_pred HHhccC--CeeeecChHHHH
Confidence 345555 899999999984
No 9
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=6.35 E-value=1.8e+02 Score=18.90 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=16.3
Q ss_pred HHHHhhhhhcCCCccccccccccccccc
Q 022244 46 QNAFRKCVSANGLGLEAVSGEDYCQVKI 73 (300)
Q Consensus 46 ~~~~~~~~~~~g~~~~~~~~~~~C~~~l 73 (300)
...||+|.+.|| ...+.|+..+
T Consensus 7 a~a~q~CL~~n~------~d~skCq~~i 28 (38)
T 1ei0_A 7 AAEIQKCLQANS------YLESKCQAVI 28 (38)
T ss_dssp HHHHHHHHHHTT------TCGGGTHHHH
T ss_pred HHHHHHHHHHCC------CcHHHHHHHH
Confidence 467899999988 5677776544
No 10
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=6.22 E-value=1.7e+02 Score=23.03 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=11.8
Q ss_pred CCccceEEEcCCccc
Q 022244 169 RQFGRCAVIGNSGDL 183 (300)
Q Consensus 169 ~~c~rCAVVGNsGiL 183 (300)
..+.||||||+..-.
T Consensus 83 ~~~~RiAvV~d~~W~ 97 (126)
T 2q3l_A 83 KEFKRVAIIGQGELQ 97 (126)
T ss_dssp GGEEEEEEECCSHHH
T ss_pred hcCCEEEEEcChHHH
Confidence 357899999998644
Done!