Query 022246
Match_columns 300
No_of_seqs 282 out of 2505
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01299 synapt_SV2 synaptic 100.0 8.7E-27 1.9E-31 219.2 22.7 196 99-296 162-369 (742)
2 TIGR02332 HpaX 4-hydroxyphenyl 99.9 1.3E-24 2.9E-29 194.8 18.8 184 101-286 5-194 (412)
3 PRK10077 xylE D-xylose transpo 99.9 1.1E-23 2.4E-28 192.5 19.2 192 100-293 8-226 (479)
4 TIGR00891 2A0112 putative sial 99.9 2.2E-23 4.9E-28 186.0 20.7 188 99-288 7-195 (405)
5 KOG1330 Sugar transporter/spin 99.9 1.9E-25 4.2E-30 193.0 6.6 186 99-286 28-214 (493)
6 PRK14995 methyl viologen resis 99.9 2.1E-23 4.5E-28 191.4 20.2 181 102-285 4-186 (495)
7 PRK10642 proline/glycine betai 99.9 4E-23 8.7E-28 189.3 21.6 186 104-289 16-220 (490)
8 TIGR00887 2A0109 phosphate:H+ 99.9 3.8E-23 8.1E-28 190.1 21.2 194 99-294 11-237 (502)
9 COG2814 AraJ Arabinose efflux 99.9 2.4E-23 5.1E-28 180.3 17.5 177 103-282 12-189 (394)
10 PRK11551 putative 3-hydroxyphe 99.9 1.9E-22 4E-27 180.6 21.2 186 100-288 11-197 (406)
11 PRK10406 alpha-ketoglutarate t 99.9 2E-22 4.4E-27 181.9 21.5 188 101-288 19-225 (432)
12 PRK12307 putative sialic acid 99.9 2.5E-22 5.5E-27 180.9 22.1 184 101-287 15-198 (426)
13 PRK03545 putative arabinose tr 99.9 1.1E-22 2.4E-27 181.3 19.4 177 106-285 11-188 (390)
14 COG2271 UhpC Sugar phosphate p 99.9 1.3E-23 2.9E-28 180.0 12.4 187 97-286 22-211 (448)
15 TIGR00879 SP MFS transporter, 99.9 1E-22 2.2E-27 185.2 18.5 188 99-289 23-224 (481)
16 PRK10213 nepI ribonucleoside t 99.9 4.7E-22 1E-26 177.4 21.0 180 103-285 19-199 (394)
17 PRK15403 multidrug efflux syst 99.9 4.1E-22 8.9E-27 178.8 19.5 179 105-286 17-196 (413)
18 PRK11663 regulatory protein Uh 99.9 3.1E-22 6.6E-27 180.8 18.8 181 103-286 22-203 (434)
19 PRK03893 putative sialic acid 99.9 1.8E-21 3.9E-26 178.7 22.4 184 101-287 17-200 (496)
20 TIGR00903 2A0129 major facilit 99.9 3.2E-22 7E-27 176.5 16.5 165 119-287 6-171 (368)
21 PRK09556 uhpT sugar phosphate 99.9 2.1E-22 4.6E-27 183.5 13.0 184 100-285 25-216 (467)
22 PLN00028 nitrate transmembrane 99.9 6E-21 1.3E-25 174.2 22.0 175 105-282 37-219 (476)
23 PRK09952 shikimate transporter 99.9 5.9E-21 1.3E-25 172.6 21.4 185 103-290 21-228 (438)
24 TIGR00711 efflux_EmrB drug res 99.9 9.2E-22 2E-26 180.0 15.9 178 105-285 3-181 (485)
25 PRK10091 MFS transport protein 99.9 3.6E-21 7.7E-26 171.1 18.8 176 107-285 6-182 (382)
26 PF07690 MFS_1: Major Facilita 99.9 2.1E-21 4.5E-26 170.0 16.6 172 110-284 2-175 (352)
27 PRK15402 multidrug efflux syst 99.9 3.7E-21 8E-26 172.3 18.0 185 99-286 8-193 (406)
28 PRK15075 citrate-proton sympor 99.9 1E-20 2.2E-25 170.9 20.4 184 103-287 14-217 (434)
29 PRK03699 putative transporter; 99.9 1.1E-20 2.5E-25 168.5 20.0 176 103-280 6-181 (394)
30 KOG0254 Predicted transporter 99.9 7.9E-21 1.7E-25 175.0 18.9 195 103-297 44-245 (513)
31 TIGR00710 efflux_Bcr_CflA drug 99.9 7.9E-21 1.7E-25 168.6 17.8 170 113-285 14-184 (385)
32 TIGR00895 2A0115 benzoate tran 99.9 5.2E-21 1.1E-25 170.2 16.6 184 101-287 14-198 (398)
33 PRK09705 cynX putative cyanate 99.9 1.1E-20 2.4E-25 168.5 18.5 171 103-277 9-179 (393)
34 TIGR00898 2A0119 cation transp 99.9 1.1E-21 2.4E-26 180.6 12.1 164 125-294 110-276 (505)
35 TIGR00894 2A0114euk Na(+)-depe 99.9 1.5E-21 3.2E-26 178.0 12.0 186 98-285 13-223 (465)
36 PRK10504 putative transporter; 99.9 2.1E-20 4.6E-25 170.6 19.4 175 106-283 12-187 (471)
37 PRK11652 emrD multidrug resist 99.9 2.6E-20 5.7E-25 166.2 19.3 178 105-285 9-187 (394)
38 TIGR00893 2A0114 d-galactonate 99.9 3.8E-21 8.2E-26 170.5 13.5 169 114-285 4-173 (399)
39 TIGR00890 2A0111 Oxalate/Forma 99.9 9.2E-21 2E-25 167.2 15.2 161 120-284 19-180 (377)
40 KOG0255 Synaptic vesicle trans 99.9 1.3E-21 2.8E-26 180.8 10.0 160 132-297 111-270 (521)
41 PRK11273 glpT sn-glycerol-3-ph 99.9 2.1E-20 4.6E-25 169.7 17.6 180 103-286 28-213 (452)
42 TIGR00806 rfc RFC reduced fola 99.9 5.4E-20 1.2E-24 162.2 19.3 172 109-286 32-207 (511)
43 TIGR00900 2A0121 H+ Antiporter 99.9 2.6E-20 5.5E-25 163.8 17.1 167 111-280 6-177 (365)
44 TIGR00881 2A0104 phosphoglycer 99.9 5.1E-21 1.1E-25 169.0 12.2 170 113-285 4-175 (379)
45 PRK10473 multidrug efflux syst 99.9 5.3E-20 1.1E-24 164.1 18.6 172 111-285 10-182 (392)
46 PRK12382 putative transporter; 99.8 6.1E-20 1.3E-24 163.7 18.6 169 112-283 23-200 (392)
47 PRK11043 putative transporter; 99.8 5.1E-20 1.1E-24 164.7 18.2 169 113-284 15-183 (401)
48 PRK05122 major facilitator sup 99.8 8.8E-20 1.9E-24 163.0 18.7 172 109-283 20-200 (399)
49 TIGR00886 2A0108 nitrite extru 99.8 6.6E-20 1.4E-24 161.7 17.3 174 109-285 6-192 (366)
50 TIGR00712 glpT glycerol-3-phos 99.8 6.1E-20 1.3E-24 166.1 16.9 181 103-286 26-211 (438)
51 TIGR00892 2A0113 monocarboxyla 99.8 1.5E-19 3.3E-24 164.1 17.2 174 103-280 18-192 (455)
52 PRK10207 dipeptide/tripeptide 99.8 3E-19 6.4E-24 163.1 18.5 178 98-281 12-193 (489)
53 PRK11102 bicyclomycin/multidru 99.8 1.6E-19 3.4E-24 160.0 16.3 163 120-285 7-170 (377)
54 PRK11195 lysophospholipid tran 99.8 3.2E-19 7E-24 159.1 17.9 167 112-285 11-177 (393)
55 PRK15034 nitrate/nitrite trans 99.8 7.2E-19 1.6E-23 157.3 19.6 177 104-283 34-234 (462)
56 PRK10054 putative transporter; 99.8 5.9E-19 1.3E-23 157.5 18.5 163 118-284 21-185 (395)
57 TIGR00805 oat sodium-independe 99.8 5.1E-20 1.1E-24 172.6 12.1 176 107-284 36-283 (633)
58 PRK10133 L-fucose transporter; 99.8 1.7E-18 3.7E-23 156.4 20.2 147 105-253 27-176 (438)
59 KOG0569 Permease of the major 99.8 1.9E-18 4.2E-23 154.1 19.8 198 100-297 7-221 (485)
60 KOG2533 Permease of the major 99.8 7.7E-20 1.7E-24 164.8 11.0 187 98-286 39-232 (495)
61 TIGR00885 fucP L-fucose:H+ sym 99.8 1E-18 2.2E-23 156.5 18.1 175 107-283 6-210 (410)
62 PRK09874 drug efflux system pr 99.8 1.4E-18 3.1E-23 155.4 19.1 173 110-284 20-196 (408)
63 PRK03633 putative MFS family t 99.8 2.1E-18 4.6E-23 153.2 19.7 149 106-256 8-156 (381)
64 PF06609 TRI12: Fungal trichot 99.8 1.1E-18 2.5E-23 159.3 17.2 169 103-276 43-211 (599)
65 PRK11646 multidrug resistance 99.8 2.8E-18 6E-23 153.4 19.2 156 124-283 31-187 (400)
66 cd06174 MFS The Major Facilita 99.8 9.5E-19 2.1E-23 152.7 15.4 168 110-280 5-172 (352)
67 TIGR00924 yjdL_sub1_fam amino 99.8 2.1E-18 4.5E-23 157.3 17.5 165 113-280 19-190 (475)
68 TIGR00899 2A0120 sugar efflux 99.8 1.9E-18 4.1E-23 152.8 16.6 171 113-286 6-181 (375)
69 PTZ00207 hypothetical protein; 99.8 5.4E-18 1.2E-22 155.7 19.5 172 102-281 26-205 (591)
70 PF00083 Sugar_tr: Sugar (and 99.8 1.5E-21 3.3E-26 177.1 -5.1 189 111-299 7-209 (451)
71 PRK10489 enterobactin exporter 99.8 1.1E-18 2.4E-23 156.9 12.1 168 115-285 28-200 (417)
72 KOG2532 Permease of the major 99.8 2.1E-18 4.6E-23 155.1 13.7 152 132-285 66-220 (466)
73 KOG0253 Synaptic vesicle trans 99.8 4.4E-18 9.5E-23 143.4 14.0 192 100-296 74-265 (528)
74 PRK10642 proline/glycine betai 99.8 1.2E-17 2.5E-22 153.3 18.2 166 124-291 271-439 (490)
75 TIGR00883 2A0106 metabolite-pr 99.8 1.2E-17 2.6E-22 148.2 17.5 173 115-289 4-198 (394)
76 TIGR00897 2A0118 polyol permea 99.8 2E-17 4.3E-22 148.1 18.4 144 126-272 35-183 (402)
77 PRK09584 tppB putative tripept 99.8 3.4E-17 7.3E-22 150.2 18.7 149 124-275 42-194 (500)
78 KOG2615 Permease of the major 99.8 8E-18 1.7E-22 142.5 11.7 143 142-285 69-217 (451)
79 KOG0252 Inorganic phosphate tr 99.7 3.7E-18 8E-23 147.8 8.6 188 99-288 36-252 (538)
80 TIGR00896 CynX cyanate transpo 99.7 2.3E-17 4.9E-22 145.2 13.9 150 121-274 17-167 (355)
81 TIGR01299 synapt_SV2 synaptic 99.7 1.5E-16 3.3E-21 150.3 19.7 140 145-286 599-738 (742)
82 PRK15011 sugar efflux transpor 99.7 5.4E-16 1.2E-20 138.4 21.0 155 126-284 239-393 (393)
83 PRK15462 dipeptide/tripeptide 99.7 2.3E-16 4.9E-21 142.7 18.4 151 124-277 30-184 (493)
84 PRK11010 ampG muropeptide tran 99.7 2.5E-16 5.5E-21 144.3 18.9 169 113-285 21-198 (491)
85 COG2223 NarK Nitrate/nitrite t 99.7 5.6E-17 1.2E-21 139.6 13.5 177 105-286 15-198 (417)
86 PRK06814 acylglycerophosphoeth 99.7 2.5E-16 5.5E-21 158.2 19.2 178 106-285 17-198 (1140)
87 PRK08633 2-acyl-glycerophospho 99.7 3.6E-16 7.8E-21 157.2 19.8 163 124-286 30-204 (1146)
88 PRK11551 putative 3-hydroxyphe 99.7 3.3E-16 7.2E-21 140.2 17.2 156 125-282 241-396 (406)
89 PRK11902 ampG muropeptide tran 99.7 6.6E-16 1.4E-20 138.3 18.5 172 110-285 5-185 (402)
90 PRK15011 sugar efflux transpor 99.7 1.5E-15 3.2E-20 135.6 20.2 164 118-285 29-198 (393)
91 TIGR00880 2_A_01_02 Multidrug 99.7 1.5E-16 3.3E-21 120.3 11.0 135 148-283 5-140 (141)
92 TIGR00889 2A0110 nucleoside tr 99.7 6.7E-16 1.4E-20 138.8 16.2 145 144-288 254-409 (418)
93 PRK09528 lacY galactoside perm 99.7 8E-16 1.7E-20 138.5 15.3 149 135-286 258-408 (420)
94 TIGR00902 2A0127 phenyl propri 99.7 1.8E-15 4E-20 134.5 17.0 163 110-277 10-174 (382)
95 KOG3764 Vesicular amine transp 99.7 6.4E-17 1.4E-21 137.8 7.1 144 135-281 102-246 (464)
96 TIGR00901 2A0125 AmpG-related 99.7 1.2E-15 2.6E-20 134.3 15.3 158 122-284 6-181 (356)
97 PRK11128 putative 3-phenylprop 99.7 1.9E-15 4E-20 134.4 16.2 165 113-284 13-181 (382)
98 TIGR00899 2A0120 sugar efflux 99.7 8.6E-15 1.9E-19 129.5 20.0 154 126-283 222-375 (375)
99 PRK09952 shikimate transporter 99.7 7.4E-15 1.6E-19 132.9 19.3 160 124-285 271-436 (438)
100 PRK05122 major facilitator sup 99.7 6.5E-15 1.4E-19 131.6 18.6 155 126-285 238-392 (399)
101 TIGR00890 2A0111 Oxalate/Forma 99.7 2.3E-15 5.1E-20 132.7 15.4 146 126-274 227-374 (377)
102 KOG2504 Monocarboxylate transp 99.7 6.5E-16 1.4E-20 140.7 12.0 177 102-282 44-221 (509)
103 cd06174 MFS The Major Facilita 99.7 8.5E-15 1.8E-19 127.7 18.4 159 120-281 191-351 (352)
104 PRK09556 uhpT sugar phosphate 99.7 5.3E-15 1.1E-19 135.0 17.7 155 125-281 280-448 (467)
105 TIGR00882 2A0105 oligosacchari 99.7 8.1E-15 1.8E-19 130.9 18.3 166 113-284 11-186 (396)
106 TIGR00887 2A0109 phosphate:H+ 99.6 5E-15 1.1E-19 136.4 14.9 164 124-287 308-494 (502)
107 PRK09528 lacY galactoside perm 99.6 2.9E-14 6.2E-19 128.4 18.0 155 123-281 30-190 (420)
108 TIGR00893 2A0114 d-galactonate 99.6 2.6E-14 5.7E-19 126.6 17.5 150 126-279 238-396 (399)
109 PRK03699 putative transporter; 99.6 3E-14 6.5E-19 127.2 17.6 159 124-286 226-384 (394)
110 TIGR00883 2A0106 metabolite-pr 99.6 1.2E-14 2.6E-19 129.0 14.9 145 126-272 242-391 (394)
111 PRK12382 putative transporter; 99.6 4E-14 8.6E-19 126.3 18.3 150 126-280 238-387 (392)
112 TIGR00879 SP MFS transporter, 99.6 1.4E-14 3.1E-19 131.7 15.2 173 110-285 290-474 (481)
113 PRK03545 putative arabinose tr 99.6 9.8E-14 2.1E-18 123.7 20.0 152 124-280 226-378 (390)
114 TIGR00892 2A0113 monocarboxyla 99.6 2.6E-14 5.6E-19 130.0 16.0 150 126-277 263-416 (455)
115 PRK10489 enterobactin exporter 99.6 7.9E-14 1.7E-18 125.4 18.4 158 126-286 246-404 (417)
116 TIGR00902 2A0127 phenyl propri 99.6 1.5E-13 3.4E-18 122.1 19.4 148 126-279 228-376 (382)
117 PRK09705 cynX putative cyanate 99.6 1.5E-13 3.3E-18 122.7 19.0 159 126-288 227-388 (393)
118 PRK11273 glpT sn-glycerol-3-ph 99.6 5.7E-14 1.2E-18 127.7 16.5 162 122-286 272-441 (452)
119 COG0738 FucP Fucose permease [ 99.6 1.2E-13 2.6E-18 118.6 16.8 176 107-284 16-214 (422)
120 PRK09874 drug efflux system pr 99.6 7.9E-14 1.7E-18 124.8 16.2 136 144-280 261-396 (408)
121 PRK10077 xylE D-xylose transpo 99.6 9.8E-14 2.1E-18 127.0 16.6 164 121-287 288-463 (479)
122 TIGR00891 2A0112 putative sial 99.6 4.4E-14 9.5E-19 126.0 13.6 141 124-267 259-401 (405)
123 PRK03633 putative MFS family t 99.6 3E-13 6.5E-18 120.2 18.6 150 126-281 222-371 (381)
124 COG2271 UhpC Sugar phosphate p 99.6 5.5E-14 1.2E-18 121.3 13.0 171 107-280 255-432 (448)
125 PRK03893 putative sialic acid 99.6 1.7E-13 3.7E-18 126.0 17.3 143 126-271 298-442 (496)
126 TIGR01301 GPH_sucrose GPH fami 99.6 3E-13 6.5E-18 122.1 18.3 165 119-285 19-222 (477)
127 PRK11663 regulatory protein Uh 99.6 1.9E-13 4.1E-18 123.6 16.7 153 125-280 265-422 (434)
128 TIGR00897 2A0118 polyol permea 99.5 6.4E-13 1.4E-17 119.0 19.6 153 124-281 242-400 (402)
129 PF11700 ATG22: Vacuole efflux 99.5 4.5E-13 9.6E-18 121.5 18.3 164 120-285 298-471 (477)
130 TIGR00889 2A0110 nucleoside tr 99.5 3.1E-13 6.8E-18 121.5 17.1 164 112-285 10-183 (418)
131 COG2807 CynX Cyanate permease 99.5 6.3E-13 1.4E-17 112.7 17.1 175 103-281 11-185 (395)
132 TIGR00792 gph sugar (Glycoside 99.5 2.2E-13 4.7E-18 123.2 15.3 160 124-285 20-198 (437)
133 PRK12307 putative sialic acid 99.5 1.3E-12 2.8E-17 117.8 19.0 135 126-263 253-389 (426)
134 PRK10504 putative transporter; 99.5 1.7E-12 3.8E-17 118.5 19.6 132 122-255 279-414 (471)
135 PRK10406 alpha-ketoglutarate t 99.5 1.5E-12 3.2E-17 117.7 18.9 159 122-283 262-425 (432)
136 PRK11010 ampG muropeptide tran 99.5 1.2E-12 2.6E-17 120.1 17.9 158 124-284 243-405 (491)
137 PRK15075 citrate-proton sympor 99.5 1.2E-12 2.6E-17 118.4 17.6 132 126-260 261-397 (434)
138 TIGR00898 2A0119 cation transp 99.5 2.5E-13 5.5E-18 125.2 13.0 137 147-286 361-499 (505)
139 TIGR00895 2A0115 benzoate tran 99.5 1.2E-12 2.7E-17 116.2 17.1 130 122-253 268-397 (398)
140 PF05977 MFS_3: Transmembrane 99.5 1.8E-12 3.9E-17 118.8 16.9 158 122-282 28-190 (524)
141 PRK11128 putative 3-phenylprop 99.5 5.4E-12 1.2E-16 112.2 19.1 144 128-276 229-373 (382)
142 KOG0569 Permease of the major 99.5 2.3E-12 5E-17 115.5 16.1 164 119-286 285-459 (485)
143 TIGR00882 2A0105 oligosacchari 99.5 2.4E-12 5.3E-17 115.0 16.2 133 144-277 257-390 (396)
144 PLN00028 nitrate transmembrane 99.5 2.8E-12 6.1E-17 117.3 16.8 154 124-282 273-433 (476)
145 TIGR00712 glpT glycerol-3-phos 99.5 1.1E-12 2.3E-17 118.9 13.8 161 122-285 270-437 (438)
146 COG3104 PTR2 Dipeptide/tripept 99.4 9.5E-13 2.1E-17 116.2 12.2 179 98-282 19-206 (498)
147 COG2814 AraJ Arabinose efflux 99.4 7E-12 1.5E-16 109.2 17.4 155 121-280 229-384 (394)
148 TIGR00788 fbt folate/biopterin 99.4 2.7E-12 5.8E-17 117.0 15.5 170 110-284 32-211 (468)
149 KOG0253 Synaptic vesicle trans 99.4 4.8E-13 1E-17 113.3 9.3 130 153-285 393-523 (528)
150 TIGR02718 sider_RhtX_FptX side 99.4 9.2E-12 2E-16 111.0 18.1 175 106-283 3-185 (390)
151 PRK08633 2-acyl-glycerophospho 99.4 6.5E-12 1.4E-16 126.7 19.0 149 124-274 253-402 (1146)
152 TIGR00881 2A0104 phosphoglycer 99.4 1.7E-12 3.8E-17 114.5 13.0 137 125-264 238-379 (379)
153 TIGR00900 2A0121 H+ Antiporter 99.4 2E-12 4.4E-17 113.5 13.4 130 125-256 232-363 (365)
154 KOG2504 Monocarboxylate transp 99.4 4E-12 8.6E-17 116.1 15.2 172 109-282 303-476 (509)
155 TIGR00894 2A0114euk Na(+)-depe 99.4 8E-12 1.7E-16 114.0 17.2 155 124-281 282-449 (465)
156 TIGR02332 HpaX 4-hydroxyphenyl 99.4 6E-12 1.3E-16 113.1 16.1 148 122-271 260-410 (412)
157 TIGR00792 gph sugar (Glycoside 99.4 4.6E-12 1E-16 114.5 15.0 143 144-287 260-426 (437)
158 PRK10091 MFS transport protein 99.4 2E-11 4.4E-16 108.5 18.6 152 124-279 220-373 (382)
159 TIGR01272 gluP glucose/galacto 99.4 2.2E-11 4.8E-16 105.1 17.9 145 120-270 157-303 (310)
160 PF05977 MFS_3: Transmembrane 99.4 1.8E-11 3.9E-16 112.3 18.1 150 126-278 240-390 (524)
161 COG2270 Permeases of the major 99.4 1E-11 2.2E-16 107.5 14.2 162 121-284 270-431 (438)
162 PRK15402 multidrug efflux syst 99.4 6.7E-11 1.4E-15 106.0 20.1 146 127-276 239-389 (406)
163 KOG2325 Predicted transporter/ 99.4 1.2E-11 2.7E-16 110.1 14.6 183 103-286 33-234 (488)
164 PRK10054 putative transporter; 99.4 1.4E-11 3E-16 110.1 15.2 149 133-285 238-388 (395)
165 PF06813 Nodulin-like: Nodulin 99.4 2E-11 4.4E-16 100.7 14.4 176 103-284 2-184 (250)
166 TIGR02718 sider_RhtX_FptX side 99.4 4.5E-11 9.8E-16 106.6 17.8 147 128-277 232-386 (390)
167 KOG4686 Predicted sugar transp 99.4 3.7E-11 8.1E-16 98.7 15.3 155 123-281 284-442 (459)
168 PRK10213 nepI ribonucleoside t 99.4 1.1E-10 2.5E-15 104.2 19.9 149 124-276 237-385 (394)
169 PRK06814 acylglycerophosphoeth 99.4 3.3E-11 7.2E-16 121.5 17.9 149 124-274 246-414 (1140)
170 TIGR00903 2A0129 major facilit 99.3 1.4E-10 3.1E-15 102.5 18.4 150 125-283 213-366 (368)
171 COG2223 NarK Nitrate/nitrite t 99.3 2.7E-11 5.8E-16 104.9 13.3 166 106-280 223-399 (417)
172 PRK11902 ampG muropeptide tran 99.3 9.6E-11 2.1E-15 104.9 17.4 150 126-282 232-390 (402)
173 TIGR00710 efflux_Bcr_CflA drug 99.3 3.9E-10 8.5E-15 100.0 21.0 137 126-267 229-371 (385)
174 TIGR00896 CynX cyanate transpo 99.3 7.1E-11 1.5E-15 103.9 15.9 134 125-261 218-353 (355)
175 TIGR00711 efflux_EmrB drug res 99.3 1.4E-10 3E-15 106.3 16.7 129 126-256 278-410 (485)
176 PRK10133 L-fucose transporter; 99.3 1.8E-10 3.9E-15 104.3 16.4 148 124-277 279-428 (438)
177 PRK11646 multidrug resistance 99.3 1.7E-10 3.6E-15 103.4 16.0 152 126-279 230-385 (400)
178 PRK09669 putative symporter Ya 99.3 1.7E-10 3.7E-15 104.7 16.0 160 123-284 29-207 (444)
179 PRK11195 lysophospholipid tran 99.3 5.4E-10 1.2E-14 99.8 18.5 145 126-275 228-373 (393)
180 PRK15034 nitrate/nitrite trans 99.3 1.2E-10 2.5E-15 104.8 13.8 132 147-278 292-450 (462)
181 PRK14995 methyl viologen resis 99.2 4.4E-10 9.6E-15 103.4 16.8 127 126-254 282-411 (495)
182 PRK10473 multidrug efflux syst 99.2 5.8E-10 1.3E-14 99.5 16.5 122 127-252 227-349 (392)
183 KOG2563 Permease of the major 99.2 9.5E-10 2.1E-14 96.1 17.0 158 96-256 37-202 (480)
184 PF03825 Nuc_H_symport: Nucleo 99.2 1.5E-09 3.2E-14 96.8 18.8 163 120-284 223-398 (400)
185 PRK09848 glucuronide transport 99.2 2.8E-10 6E-15 103.4 14.6 127 126-254 250-386 (448)
186 PRK11102 bicyclomycin/multidru 99.2 1.5E-09 3.2E-14 96.2 18.7 125 126-253 217-346 (377)
187 PRK10429 melibiose:sodium symp 99.2 6.7E-10 1.4E-14 101.7 16.8 159 124-284 27-204 (473)
188 TIGR00901 2A0125 AmpG-related 99.2 5.7E-10 1.2E-14 98.2 15.3 113 126-240 231-355 (356)
189 PF07690 MFS_1: Major Facilita 99.2 2E-10 4.4E-15 100.4 12.3 123 123-247 225-352 (352)
190 KOG0252 Inorganic phosphate tr 99.2 4.7E-11 1E-15 104.2 7.4 186 104-289 304-505 (538)
191 PF13347 MFS_2: MFS/sugar tran 99.2 7.7E-10 1.7E-14 100.0 15.1 130 122-254 243-382 (428)
192 PF03825 Nuc_H_symport: Nucleo 99.2 1.2E-09 2.6E-14 97.4 15.9 169 113-285 11-183 (400)
193 PF01306 LacY_symp: LacY proto 99.2 1.6E-10 3.5E-15 101.7 10.2 141 143-284 261-403 (412)
194 PF00083 Sugar_tr: Sugar (and 99.2 1.3E-13 2.8E-18 125.3 -10.2 161 122-287 271-442 (451)
195 PF05631 DUF791: Protein of un 99.2 2.2E-09 4.8E-14 91.8 16.1 154 129-285 59-220 (354)
196 PF13347 MFS_2: MFS/sugar tran 99.2 4.1E-10 8.8E-15 101.8 12.4 158 124-283 22-200 (428)
197 COG0477 ProP Permeases of the 99.1 4.3E-09 9.2E-14 89.3 17.2 155 118-274 16-177 (338)
198 PRK11043 putative transporter; 99.1 8.2E-09 1.8E-13 92.4 19.4 128 126-256 225-357 (401)
199 PRK10429 melibiose:sodium symp 99.1 1.1E-09 2.3E-14 100.3 13.5 128 126-255 253-392 (473)
200 PRK09669 putative symporter Ya 99.1 2.2E-09 4.7E-14 97.5 15.2 112 144-255 267-387 (444)
201 KOG2532 Permease of the major 99.1 2.3E-09 5.1E-14 96.9 13.3 164 122-289 277-456 (466)
202 COG2807 CynX Cyanate permease 99.1 2.7E-08 5.9E-13 84.9 18.7 176 98-280 206-383 (395)
203 TIGR00924 yjdL_sub1_fam amino 99.0 2.3E-08 4.9E-13 91.6 18.6 136 144-280 315-466 (475)
204 PRK09584 tppB putative tripept 99.0 1.8E-08 4E-13 92.7 18.0 137 144-280 319-477 (500)
205 KOG3626 Organic anion transpor 99.0 2.7E-09 5.8E-14 99.3 12.2 181 104-286 97-347 (735)
206 TIGR00885 fucP L-fucose:H+ sym 99.0 2.3E-08 4.9E-13 89.9 17.0 143 124-271 253-401 (410)
207 PRK11652 emrD multidrug resist 99.0 1.1E-07 2.4E-12 84.9 19.6 128 126-256 230-360 (394)
208 KOG3762 Predicted transporter 99.0 3.8E-09 8.2E-14 94.1 9.6 167 110-279 377-544 (618)
209 PRK11462 putative transporter; 99.0 3.1E-08 6.7E-13 90.3 15.9 159 124-284 30-207 (460)
210 TIGR00886 2A0108 nitrite extru 98.9 6.7E-09 1.4E-13 91.5 10.9 116 124-242 246-365 (366)
211 KOG2816 Predicted transporter 98.9 2.1E-08 4.6E-13 90.5 13.7 175 104-285 22-203 (463)
212 KOG0254 Predicted transporter 98.9 3.7E-08 7.9E-13 91.2 15.7 177 108-288 299-490 (513)
213 TIGR00926 2A1704 Peptide:H+ sy 98.9 4.2E-08 9E-13 92.4 14.8 154 124-279 8-179 (654)
214 PF01306 LacY_symp: LacY proto 98.9 2E-08 4.3E-13 88.7 11.2 156 120-281 23-187 (412)
215 PRK09848 glucuronide transport 98.9 1.6E-07 3.5E-12 85.4 17.5 127 125-253 30-174 (448)
216 PF03137 OATP: Organic Anion T 98.9 3.3E-10 7.2E-15 104.4 -0.7 175 108-284 7-252 (539)
217 PRK11462 putative transporter; 98.8 2.6E-07 5.7E-12 84.3 17.6 111 144-254 266-385 (460)
218 PRK10207 dipeptide/tripeptide 98.8 1.8E-07 3.9E-12 85.9 16.5 137 144-280 312-474 (489)
219 COG2211 MelB Na+/melibiose sym 98.8 6.9E-08 1.5E-12 86.3 13.2 120 135-254 266-394 (467)
220 TIGR00788 fbt folate/biopterin 98.8 1.3E-08 2.9E-13 92.9 8.0 123 132-256 281-413 (468)
221 COG2211 MelB Na+/melibiose sym 98.8 2.6E-07 5.6E-12 82.6 15.7 161 123-285 32-211 (467)
222 COG0738 FucP Fucose permease [ 98.8 3.3E-07 7.1E-12 79.5 14.6 148 120-273 252-400 (422)
223 KOG3764 Vesicular amine transp 98.8 3.2E-08 6.9E-13 85.4 8.1 155 122-279 288-451 (464)
224 PF03092 BT1: BT1 family; Int 98.7 1.8E-07 4E-12 84.5 13.0 153 125-281 11-174 (433)
225 KOG4686 Predicted sugar transp 98.7 1.7E-09 3.6E-14 89.1 -0.3 153 101-255 41-197 (459)
226 PF03209 PUCC: PUCC protein; 98.7 1.2E-06 2.6E-11 76.5 16.6 151 126-278 231-394 (403)
227 TIGR01301 GPH_sucrose GPH fami 98.7 5.5E-07 1.2E-11 81.8 15.1 142 144-285 308-475 (477)
228 PRK15403 multidrug efflux syst 98.6 4.2E-06 9.1E-11 75.4 19.0 141 127-273 242-388 (413)
229 PF01770 Folate_carrier: Reduc 98.6 2E-06 4.3E-11 75.9 15.8 177 107-286 8-186 (412)
230 PF05978 UNC-93: Ion channel r 98.6 2.2E-06 4.9E-11 65.7 14.1 108 145-253 41-148 (156)
231 KOG0255 Synaptic vesicle trans 98.6 1.4E-06 3E-11 80.9 15.0 154 126-286 340-497 (521)
232 PF06779 DUF1228: Protein of u 98.6 6.3E-07 1.4E-11 60.7 8.4 79 117-197 5-83 (85)
233 PF06609 TRI12: Fungal trichot 98.6 3.6E-06 7.7E-11 78.0 16.1 160 126-287 333-559 (599)
234 KOG2533 Permease of the major 98.6 4.3E-07 9.4E-12 82.7 10.0 161 108-270 277-444 (495)
235 PF11700 ATG22: Vacuole efflux 98.5 9.7E-06 2.1E-10 74.0 18.2 145 142-286 71-252 (477)
236 PF03209 PUCC: PUCC protein; 98.5 1.2E-05 2.5E-10 70.5 15.7 130 130-262 6-157 (403)
237 PF12832 MFS_1_like: MFS_1 lik 98.4 1.7E-06 3.6E-11 58.0 7.7 68 112-181 8-75 (77)
238 TIGR01272 gluP glucose/galacto 98.4 1.4E-06 3E-11 75.3 8.5 96 189-284 5-117 (310)
239 KOG2615 Permease of the major 98.3 1.2E-05 2.5E-10 69.5 11.5 123 131-255 289-413 (451)
240 PRK15462 dipeptide/tripeptide 98.3 8.6E-05 1.9E-09 67.9 18.0 131 144-274 311-469 (493)
241 PTZ00207 hypothetical protein; 98.2 3.6E-05 7.8E-10 71.7 14.2 164 122-287 371-558 (591)
242 TIGR00769 AAA ADP/ATP carrier 98.2 0.00023 5.1E-09 64.6 18.7 127 126-254 25-189 (472)
243 KOG1237 H+/oligopeptide sympor 98.2 6.9E-05 1.5E-09 69.7 15.4 156 121-279 55-242 (571)
244 PF00854 PTR2: POT family; In 98.1 3.6E-05 7.9E-10 68.3 10.4 109 172-281 2-122 (372)
245 PF02487 CLN3: CLN3 protein; 98.0 0.00025 5.4E-09 62.7 15.2 106 144-253 284-394 (402)
246 KOG0637 Sucrose transporter an 98.0 2.1E-05 4.6E-10 69.4 8.4 126 126-253 54-202 (498)
247 COG2270 Permeases of the major 98.0 8.8E-05 1.9E-09 65.1 12.1 159 126-284 38-223 (438)
248 COG3104 PTR2 Dipeptide/tripept 97.9 0.00017 3.6E-09 64.7 12.0 137 144-280 327-485 (498)
249 KOG2816 Predicted transporter 97.9 0.0001 2.3E-09 66.8 10.6 124 128-254 266-390 (463)
250 KOG3574 Acetyl-CoA transporter 97.8 0.00042 9.1E-09 60.1 11.7 141 108-253 35-192 (510)
251 PRK03612 spermidine synthase; 97.8 0.0047 1E-07 57.2 19.5 126 127-255 38-170 (521)
252 KOG2563 Permease of the major 97.6 0.00025 5.5E-09 62.7 7.9 151 132-284 294-452 (480)
253 TIGR00805 oat sodium-independe 97.4 0.0029 6.3E-08 60.2 12.6 132 122-255 349-580 (633)
254 PF02487 CLN3: CLN3 protein; 97.4 0.0029 6.2E-08 56.1 11.4 126 150-280 68-193 (402)
255 KOG3098 Uncharacterized conser 97.4 0.0061 1.3E-07 55.0 13.6 106 147-253 56-161 (461)
256 KOG1330 Sugar transporter/spin 97.3 0.0007 1.5E-08 60.2 7.0 132 128-261 272-417 (493)
257 COG3202 ATP/ADP translocase [E 97.3 0.057 1.2E-06 48.8 18.6 162 126-287 45-254 (509)
258 KOG3098 Uncharacterized conser 97.3 0.021 4.6E-07 51.6 16.1 107 144-251 282-409 (461)
259 PF03092 BT1: BT1 family; Int 97.1 0.0022 4.8E-08 58.1 8.3 151 136-288 252-419 (433)
260 KOG4332 Predicted sugar transp 97.0 0.00046 9.9E-09 57.2 2.7 96 125-223 58-154 (454)
261 TIGR00939 2a57 Equilibrative N 96.9 0.02 4.3E-07 51.9 12.4 108 144-252 310-430 (437)
262 PF06963 FPN1: Ferroportin1 (F 96.9 0.031 6.7E-07 50.4 13.4 126 126-253 280-415 (432)
263 PF03219 TLC: TLC ATP/ADP tran 96.5 0.34 7.3E-06 44.6 17.4 103 153-255 71-205 (491)
264 KOG2325 Predicted transporter/ 96.4 0.0031 6.8E-08 57.1 3.9 74 202-276 396-469 (488)
265 KOG3762 Predicted transporter 96.4 0.0015 3.3E-08 59.2 1.8 73 116-190 23-96 (618)
266 KOG3810 Micronutrient transpor 96.2 0.0085 1.8E-07 51.6 5.1 161 126-288 27-189 (433)
267 PF03137 OATP: Organic Anion T 96.2 0.0013 2.8E-08 61.2 0.0 133 122-256 324-514 (539)
268 KOG1479 Nucleoside transporter 95.9 0.74 1.6E-05 41.0 15.9 163 118-285 32-207 (406)
269 PF13000 Acatn: Acetyl-coenzym 95.9 0.042 9E-07 49.8 8.1 142 109-254 5-178 (544)
270 PF01770 Folate_carrier: Reduc 95.8 0.21 4.5E-06 44.7 11.8 108 144-254 288-397 (412)
271 KOG3626 Organic anion transpor 95.3 0.24 5.3E-06 47.3 11.2 59 197-255 589-648 (735)
272 KOG3097 Predicted membrane pro 95.3 0.15 3.3E-06 43.8 8.8 69 154-223 71-139 (390)
273 TIGR00939 2a57 Equilibrative N 95.2 1.1 2.3E-05 40.9 14.8 88 193-285 105-199 (437)
274 PF06963 FPN1: Ferroportin1 (F 94.8 3.1 6.7E-05 37.8 18.9 163 110-276 8-194 (432)
275 PF07672 MFS_Mycoplasma: Mycop 94.5 0.43 9.3E-06 39.7 9.4 101 145-245 145-257 (267)
276 PF01733 Nucleoside_tran: Nucl 94.4 0.012 2.7E-07 50.8 0.3 107 146-252 187-306 (309)
277 KOG1479 Nucleoside transporter 94.3 0.13 2.8E-06 45.6 6.4 108 144-252 285-401 (406)
278 PF13000 Acatn: Acetyl-coenzym 93.5 1.9 4.1E-05 39.5 12.2 58 198-255 409-466 (544)
279 TIGR00806 rfc RFC reduced fola 93.5 2 4.4E-05 39.4 12.5 107 144-253 301-409 (511)
280 KOG3880 Predicted small molecu 93.3 0.12 2.5E-06 44.1 4.0 105 144-253 291-401 (409)
281 PF06912 DUF1275: Protein of u 92.5 4.8 0.0001 32.5 16.5 40 146-185 51-93 (209)
282 KOG0637 Sucrose transporter an 92.0 0.1 2.3E-06 46.7 2.2 128 144-271 335-485 (498)
283 KOG3810 Micronutrient transpor 91.6 4.6 9.9E-05 35.4 11.5 131 144-277 274-416 (433)
284 TIGR00880 2_A_01_02 Multidrug 89.3 6.5 0.00014 28.3 10.2 40 144-183 90-129 (141)
285 TIGR00769 AAA ADP/ATP carrier 87.3 24 0.00052 32.5 17.5 72 201-273 273-345 (472)
286 COG1230 CzcD Co/Zn/Cd efflux s 86.8 19 0.00041 30.8 14.3 77 103-187 24-103 (296)
287 PRK10263 DNA translocase FtsK; 86.5 4.6 0.0001 41.4 9.1 20 150-169 61-80 (1355)
288 KOG3880 Predicted small molecu 85.5 0.65 1.4E-05 39.8 2.4 124 153-281 74-198 (409)
289 KOG4332 Predicted sugar transp 85.0 19 0.00042 30.6 10.6 134 142-276 283-425 (454)
290 KOG1237 H+/oligopeptide sympor 84.4 21 0.00046 33.8 12.1 88 193-280 457-558 (571)
291 COG4262 Predicted spermidine s 83.8 30 0.00065 30.6 14.3 78 144-221 46-132 (508)
292 PF11947 DUF3464: Protein of u 83.1 5.7 0.00012 30.2 6.3 51 192-245 95-145 (153)
293 TIGR00926 2A1704 Peptide:H+ sy 80.1 11 0.00024 36.3 8.7 85 193-278 564-648 (654)
294 KOG2765 Predicted membrane pro 76.3 19 0.00041 31.7 8.0 13 165-177 208-220 (416)
295 TIGR01666 YCCS hypothetical me 75.1 41 0.00088 32.8 10.9 53 159-211 41-98 (704)
296 COG5336 Uncharacterized protei 74.2 13 0.00028 26.3 5.4 24 151-174 52-76 (116)
297 PF06570 DUF1129: Protein of u 73.2 47 0.001 26.7 10.2 22 260-281 176-197 (206)
298 TIGR01667 YCCS_YHJK integral m 73.1 55 0.0012 32.0 11.3 53 159-211 41-98 (701)
299 PF12805 FUSC-like: FUSC-like 64.9 56 0.0012 27.8 8.7 34 176-209 4-38 (284)
300 KOG2601 Iron transporter [Inor 63.8 1.1E+02 0.0024 27.5 13.5 118 155-273 77-217 (503)
301 PF07760 DUF1616: Protein of u 63.0 94 0.002 26.5 9.7 68 197-265 22-89 (287)
302 KOG3574 Acetyl-CoA transporter 62.2 1.1E+02 0.0023 27.8 9.7 55 201-255 376-430 (510)
303 PF02632 BioY: BioY family; I 61.3 35 0.00077 25.9 6.1 26 147-172 59-84 (148)
304 PF04346 EutH: Ethanolamine ut 59.4 1.3E+02 0.0027 26.6 10.3 106 144-250 50-161 (354)
305 COG1268 BioY Uncharacterized c 55.5 56 0.0012 25.9 6.4 24 147-170 88-111 (184)
306 COG5336 Uncharacterized protei 54.7 36 0.00079 24.1 4.6 52 225-276 37-89 (116)
307 TIGR00844 c_cpa1 na(+)/h(+) an 54.4 1.7E+02 0.0036 29.1 10.5 14 126-139 28-41 (810)
308 COG3619 Predicted membrane pro 54.3 1.2E+02 0.0026 24.9 16.9 27 144-170 58-84 (226)
309 TIGR00927 2A1904 K+-dependent 53.2 1.6E+02 0.0035 29.8 10.2 49 123-175 952-1000(1096)
310 PF03219 TLC: TLC ATP/ADP tran 52.9 2E+02 0.0043 26.9 18.0 72 201-273 289-361 (491)
311 PF11833 DUF3353: Protein of u 52.2 84 0.0018 25.1 7.0 27 229-255 140-166 (194)
312 COG2233 UraA Xanthine/uracil p 51.9 1.9E+02 0.0042 26.5 13.6 104 128-234 38-145 (451)
313 PF10225 DUF2215: Uncharacteri 51.2 1.3E+02 0.0027 25.2 8.2 51 190-244 30-80 (249)
314 PTZ00265 multidrug resistance 50.7 3.6E+02 0.0077 29.2 13.7 23 258-280 195-217 (1466)
315 PF11299 DUF3100: Protein of u 49.3 31 0.00067 28.3 4.2 91 162-253 128-229 (241)
316 PF11947 DUF3464: Protein of u 48.9 1.2E+02 0.0026 23.2 7.1 28 144-171 99-126 (153)
317 PF02694 UPF0060: Uncharacteri 45.1 41 0.00089 23.8 3.7 44 144-187 57-100 (107)
318 PRK11588 hypothetical protein; 44.7 1.5E+02 0.0033 27.7 8.3 22 258-279 229-250 (506)
319 TIGR02230 ATPase_gene1 F0F1-AT 44.6 1.1E+02 0.0024 21.5 5.9 31 240-270 53-86 (100)
320 COG0109 CyoE Polyprenyltransfe 44.3 40 0.00086 28.9 4.3 81 168-261 96-176 (304)
321 PLN02332 membrane bound O-acyl 44.2 1.7E+02 0.0037 27.0 8.7 29 170-198 340-368 (465)
322 KOG1307 K+-dependent Ca2+/Na+ 44.1 1.5E+02 0.0033 27.2 7.9 20 122-141 442-461 (588)
323 PF00854 PTR2: POT family; In 43.2 80 0.0017 27.8 6.4 65 126-190 54-121 (372)
324 PF15061 DUF4538: Domain of un 43.0 11 0.00024 23.3 0.6 21 258-278 3-23 (58)
325 PF11345 DUF3147: Protein of u 41.7 1.3E+02 0.0028 21.5 6.5 40 241-280 66-105 (108)
326 PRK03818 putative transporter; 41.4 2.9E+02 0.0063 26.2 9.9 78 144-222 438-516 (552)
327 PF10785 NADH-u_ox-rdase: NADH 40.6 99 0.0021 21.0 5.0 36 159-194 36-78 (86)
328 PF11151 DUF2929: Protein of u 40.5 89 0.0019 19.3 6.2 45 239-284 11-55 (57)
329 PRK11715 inner membrane protei 39.9 3E+02 0.0065 25.2 9.6 68 163-234 319-391 (436)
330 COG2119 Predicted membrane pro 39.8 1.9E+02 0.0041 22.9 9.1 38 149-186 142-179 (190)
331 KOG2927 Membrane component of 39.7 20 0.00042 31.2 1.8 13 160-172 178-190 (372)
332 PF08566 Pam17: Mitochondrial 39.4 60 0.0013 25.3 4.2 30 133-162 71-100 (173)
333 PF01405 PsbT: Photosystem II 38.7 61 0.0013 16.9 2.9 12 275-286 17-28 (29)
334 COG4858 Uncharacterized membra 38.3 2E+02 0.0044 22.8 9.5 24 258-281 189-212 (226)
335 COG1289 Predicted membrane pro 38.1 2E+02 0.0044 28.0 8.6 49 144-197 37-85 (674)
336 PF06123 CreD: Inner membrane 37.6 3.2E+02 0.007 25.0 9.8 68 163-234 313-385 (430)
337 TIGR02230 ATPase_gene1 F0F1-AT 37.5 1.5E+02 0.0032 20.9 5.8 14 161-174 62-76 (100)
338 COG0861 TerC Membrane protein 37.5 2.5E+02 0.0054 23.6 9.2 65 202-269 24-88 (254)
339 PF04550 Phage_holin_2: Phage 37.2 1.1E+02 0.0025 20.8 4.7 35 192-226 29-63 (89)
340 PF11872 DUF3392: Protein of u 36.6 1.6E+02 0.0034 21.0 6.4 31 102-135 51-81 (106)
341 COG1288 Predicted membrane pro 36.6 3.4E+02 0.0074 24.9 12.6 72 175-247 358-437 (481)
342 PLN02776 prenyltransferase 36.2 3E+02 0.0066 24.2 9.9 24 170-193 75-98 (341)
343 PF06779 DUF1228: Protein of u 35.7 1.4E+02 0.003 20.2 7.9 67 205-275 5-71 (85)
344 PRK15049 L-asparagine permease 35.5 3.7E+02 0.008 25.0 10.7 22 259-280 446-467 (499)
345 TIGR00986 3a0801s05tom22 mitoc 35.1 1.2E+02 0.0026 22.8 5.1 24 218-241 57-80 (145)
346 KOG4830 Predicted sugar transp 34.9 93 0.002 26.4 4.9 45 127-173 40-93 (412)
347 PRK11875 psbT photosystem II r 34.8 75 0.0016 16.8 2.8 10 277-286 19-28 (31)
348 PF02535 Zip: ZIP Zinc transpo 34.7 2.9E+02 0.0063 23.5 15.7 14 197-210 263-276 (317)
349 COG2274 SunT ABC-type bacterio 34.5 4.6E+02 0.01 25.8 12.4 26 258-283 291-316 (709)
350 PF04281 Tom22: Mitochondrial 34.1 1.1E+02 0.0023 23.0 4.7 24 218-241 59-82 (137)
351 PF07857 DUF1632: CEO family ( 33.8 1.5E+02 0.0034 24.8 6.2 22 260-281 114-135 (254)
352 PRK02237 hypothetical protein; 33.4 1.8E+02 0.0039 20.8 7.2 44 144-187 59-102 (109)
353 PF13829 DUF4191: Domain of un 32.8 1.3E+02 0.0028 24.6 5.3 42 231-276 26-67 (224)
354 PRK12847 ubiA 4-hydroxybenzoat 32.3 3.1E+02 0.0068 23.2 11.5 18 171-188 92-109 (285)
355 CHL00031 psbT photosystem II p 31.8 82 0.0018 17.0 2.7 11 276-286 18-28 (33)
356 PF02660 G3P_acyltransf: Glyce 31.6 2.6E+02 0.0055 22.0 6.9 41 186-226 50-90 (178)
357 PF04474 DUF554: Protein of un 30.9 1.6E+02 0.0034 24.2 5.6 54 149-202 10-63 (226)
358 PF06645 SPC12: Microsomal sig 30.8 1.3E+02 0.0029 19.8 4.4 6 160-165 26-31 (76)
359 PF07672 MFS_Mycoplasma: Mycop 30.8 37 0.00079 28.6 2.0 56 226-281 2-61 (267)
360 TIGR03802 Asp_Ala_antiprt aspa 30.6 4.2E+02 0.0091 25.2 9.2 30 144-174 453-482 (562)
361 PRK10692 hypothetical protein; 30.3 1.8E+02 0.0039 19.8 4.9 17 170-186 3-19 (92)
362 PF10183 ESSS: ESSS subunit of 29.5 79 0.0017 22.4 3.3 28 258-285 57-85 (105)
363 COG4177 LivM ABC-type branched 29.3 2.9E+02 0.0064 24.0 7.3 19 236-254 249-267 (314)
364 COG4769 Predicted membrane pro 28.8 1.4E+02 0.003 23.2 4.5 52 150-207 82-133 (181)
365 PF04226 Transgly_assoc: Trans 28.6 1.3E+02 0.0029 17.8 4.7 34 241-275 6-39 (48)
366 COG5547 Small integral membran 28.5 1.5E+02 0.0033 18.4 5.1 17 172-188 9-25 (62)
367 PRK12996 ulaA PTS system ascor 27.8 4.9E+02 0.011 24.0 11.9 57 192-250 146-203 (463)
368 COG1288 Predicted membrane pro 27.7 54 0.0012 29.7 2.6 39 242-280 200-238 (481)
369 PRK13629 threonine/serine tran 27.7 4.9E+02 0.011 24.0 8.9 59 115-176 112-171 (443)
370 COG1811 Uncharacterized membra 26.9 2.4E+02 0.0053 22.9 5.8 53 150-202 12-64 (228)
371 PRK15086 ethanolamine utilizat 26.8 4.6E+02 0.0099 23.4 10.2 67 144-211 51-120 (372)
372 PRK10457 hypothetical protein; 26.2 2.1E+02 0.0045 19.3 7.1 38 237-274 34-72 (82)
373 TIGR00801 ncs2 uracil-xanthine 25.3 5.1E+02 0.011 23.4 15.9 104 126-232 24-132 (415)
374 PRK11715 inner membrane protei 25.0 5.4E+02 0.012 23.6 11.7 14 163-176 350-363 (436)
375 PRK04972 putative transporter; 24.7 5.7E+02 0.012 24.3 8.9 109 143-253 64-184 (558)
376 PF10762 DUF2583: Protein of u 23.6 2.3E+02 0.0049 19.2 4.3 16 170-185 3-18 (89)
377 TIGR02865 spore_II_E stage II 23.6 5.2E+02 0.011 25.7 8.7 24 200-223 189-212 (764)
378 TIGR03750 conj_TIGR03750 conju 23.4 2.7E+02 0.0059 20.0 5.0 15 163-177 3-17 (111)
379 PHA02844 putative transmembran 23.4 94 0.002 20.4 2.4 16 259-274 45-60 (75)
380 COG1079 Uncharacterized ABC-ty 23.0 5E+02 0.011 22.5 10.9 92 157-252 23-116 (304)
381 TIGR00927 2A1904 K+-dependent 22.8 3.9E+02 0.0086 27.3 7.5 24 118-141 474-497 (1096)
382 PF11085 YqhR: Conserved membr 22.6 3.8E+02 0.0082 21.0 8.7 57 154-210 81-150 (173)
383 PF06826 Asp-Al_Ex: Predicted 22.3 3.8E+02 0.0082 20.8 9.6 78 144-224 59-138 (169)
384 PF06123 CreD: Inner membrane 22.1 6.1E+02 0.013 23.2 11.7 19 161-179 342-360 (430)
385 PTZ00370 STEVOR; Provisional 22.0 1.3E+02 0.0028 25.6 3.6 23 258-280 255-277 (296)
386 PF04024 PspC: PspC domain; I 22.0 81 0.0018 19.8 2.0 27 259-285 30-60 (61)
387 PF03616 Glt_symporter: Sodium 21.6 1.1E+02 0.0024 27.3 3.4 34 130-166 147-180 (368)
388 KOG1277 Endosomal membrane pro 21.6 4E+02 0.0087 24.6 6.7 30 144-173 326-360 (593)
389 PHA03054 IMV membrane protein; 21.3 1.1E+02 0.0024 19.8 2.4 16 259-274 45-60 (72)
390 PF05631 DUF791: Protein of un 21.1 5.9E+02 0.013 22.6 17.8 101 154-254 176-302 (354)
391 PF01733 Nucleoside_tran: Nucl 20.9 32 0.0007 29.6 0.0 78 202-284 5-86 (309)
392 COG4232 Thiol:disulfide interc 20.8 6.9E+02 0.015 23.8 8.3 82 198-279 170-260 (569)
393 PHA02819 hypothetical protein; 20.7 1.2E+02 0.0025 19.7 2.4 16 259-274 43-58 (71)
394 TIGR00918 2A060602 The Eukaryo 20.6 1E+03 0.022 25.1 13.0 28 193-220 1018-1045(1145)
395 TIGR00930 2a30 K-Cl cotranspor 20.5 9.4E+02 0.02 24.7 16.4 7 259-265 518-524 (953)
396 TIGR03718 R_switched_Alx integ 20.2 5.7E+02 0.012 22.1 9.7 52 222-276 91-142 (302)
397 TIGR00210 gltS sodium--glutama 20.2 1.1E+02 0.0024 27.6 3.2 36 128-166 145-180 (398)
398 PF14494 DUF4436: Domain of un 20.1 3.9E+02 0.0085 22.4 6.2 23 156-178 221-243 (256)
No 1
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.95 E-value=8.7e-27 Score=219.20 Aligned_cols=196 Identities=27% Similarity=0.317 Sum_probs=174.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHh
Q 022246 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA 178 (300)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~ 178 (300)
.+..|.++++++++.+..+++...++..+|.+.+++|++..+. +++.+++.++.+++.+++|+++||+|||+++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~--g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l 239 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK--GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL 239 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 4556777778888888888888888999999999999998887 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC--
Q 022246 179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-- 256 (300)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-- 256 (300)
++++++.++++++++++.++++|++.|++.++..+....++.|++|++.|+..++++.++..+|.++++.+++.+...
T Consensus 240 il~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G 319 (742)
T TIGR01299 240 SVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG 319 (742)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876554321
Q ss_pred ----------CCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcCccc
Q 022246 257 ----------PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDY 296 (300)
Q Consensus 257 ----------~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~ 296 (300)
..+||+.|++.++..++.+++.+++||+|+|+..+++.++
T Consensus 320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~e 369 (742)
T TIGR01299 320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDE 369 (742)
T ss_pred chhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHH
Confidence 1469999999888888777788889999999887666543
No 2
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.93 E-value=1.3e-24 Score=194.80 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHH
Q 022246 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~ 180 (300)
.+|.++..+++.++.++++...++...|.+.+++|++..+. +++.+++.+++++++++.|+++||+|||+++..+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF--GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence 34667777788888899999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC-----
Q 022246 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG----- 255 (300)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----- 255 (300)
++++.+++++++|++.+++.|++.|++.++..+....++.|++|+++|+++++++..+..+|.++++++++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (412)
T TIGR02332 83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM 162 (412)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887753
Q ss_pred CCCchHHHHHHhHHHHHHHH-HHhhcCCCChh
Q 022246 256 NPLWWRTMFGLAAIPSILLA-LGMGLSPESPR 286 (300)
Q Consensus 256 ~~~~w~~~f~~~~~~~~~~~-~~~~~~pe~~~ 286 (300)
...|||+.|++.+++.++.. +.++++||+|+
T Consensus 163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred CccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 13689999999888876554 45566788763
No 3
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.92 E-value=1.1e-23 Score=192.53 Aligned_cols=192 Identities=35% Similarity=0.594 Sum_probs=163.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh--------CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCch
Q 022246 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL--------GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT 171 (300)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr 171 (300)
+....++.++.++.+..+++...++...+.+++++ +.+..+. +++.+++.++.+++++++|+++||+|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~ig~~~~~~~~G~l~dr~Grr 85 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL--GFCVASALIGCIIGGALGGYCSNRFGRR 85 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 33455667777888999999999999999999988 7777777 9999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHH
Q 022246 172 RTFQLDAVPLAAGAFLCATA------------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFI 239 (300)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 239 (300)
++++.+.++++++.++++++ ..+..+++.|+++|++.|+..+...++++|++|+++|++++++...+.
T Consensus 86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 165 (479)
T PRK10077 86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI 165 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence 99999999998888877653 235678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccC-------CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcC
Q 022246 240 CVGILAALVAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFL 293 (300)
Q Consensus 240 ~~g~~~~~~~~~~~~~-------~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~ 293 (300)
.+|.++++++++.+.. ...+||+.|++.++..++..+..+++||+|+++..+++
T Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~ 226 (479)
T PRK10077 166 IFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGK 226 (479)
T ss_pred HHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCC
Confidence 9999998887765431 23689999999888887777777788999887644433
No 4
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.92 E-value=2.2e-23 Score=185.97 Aligned_cols=188 Identities=23% Similarity=0.304 Sum_probs=167.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHh
Q 022246 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA 178 (300)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~ 178 (300)
.+..|..+..+++..+..+++....+...+.+++++|++..+. +++.+++.++..++.++.|+++||+|||++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA--ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3455677788888889999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC-
Q 022246 179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP- 257 (300)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 257 (300)
++.+++.++++++++++.+++.|++.|++.+..++....++.|++|+++|+++.++...+..+|.++++.+++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876541
Q ss_pred CchHHHHHHhHHHHHHHHHHhhcCCCChhHH
Q 022246 258 LWWRTMFGLAAIPSILLALGMGLSPESPRWL 288 (300)
Q Consensus 258 ~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~ 288 (300)
.+||+.|++.++..++..+....+||++++.
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 195 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWLRKNIPEAEDWK 195 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 3599999987776666666666778876543
No 5
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.9e-25 Score=193.02 Aligned_cols=186 Identities=20% Similarity=0.286 Sum_probs=171.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHh
Q 022246 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA 178 (300)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~ 178 (300)
.+..++.+.+.++...+++++...+....+.+++.||++++.. |++.+++.+++.++.|++|+|+|||+||+++.+|.
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~--Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~ 105 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL--GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGI 105 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc--cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHH
Confidence 3444667788889999999999999999999999999998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 022246 179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL 258 (300)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 258 (300)
.+|.++.++++++..+|+++++|.+.|+|.+...++.+.+++|.||..+|++++++++++..+|..+|.+++..+.....
T Consensus 106 ~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 106 FIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987756
Q ss_pred chHHHHHHhHHHHHHHHHHh-hcCCCChh
Q 022246 259 WWRTMFGLAAIPSILLALGM-GLSPESPR 286 (300)
Q Consensus 259 ~w~~~f~~~~~~~~~~~~~~-~~~pe~~~ 286 (300)
.|||.|++.+++.++++++. ++++|+++
T Consensus 186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 186 WWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred ceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 69999999999998876654 55666554
No 6
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.92 E-value=2.1e-23 Score=191.38 Aligned_cols=181 Identities=17% Similarity=0.157 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHH
Q 022246 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (300)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~ 181 (300)
+|..+..+++..++..++.++++..+|.+.+++|.+.++. +|+.+.+.++.+++.+++|+++||+|||++++.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4667888889999999999999999999999999998888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccC-CcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (300)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w 260 (300)
+++.+++++++|++.++++|+++|++.++..+.....+.+.+ |+++|+++++++.....+|..+||.+++.+.+. .+|
T Consensus 82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~-~gw 160 (495)
T PRK14995 82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH-FYW 160 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCh
Confidence 999999999999999999999999999998888888887776 678999999999999999999999999999876 899
Q ss_pred HHHHHHhHHHHHHHHH-HhhcCCCCh
Q 022246 261 RTMFGLAAIPSILLAL-GMGLSPESP 285 (300)
Q Consensus 261 ~~~f~~~~~~~~~~~~-~~~~~pe~~ 285 (300)
||.|++...+.++.++ ..+++|+.+
T Consensus 161 r~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 161 GSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999998877766544 445567654
No 7
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.91 E-value=4e-23 Score=189.31 Aligned_cols=186 Identities=19% Similarity=0.230 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhh---HHHH-HHHHHHHHHHHHHhhhhhhccccCchHHHHHHhH
Q 022246 104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTV---LQGW-IVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (300)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~-~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~ 179 (300)
..+....++.++.+++..++++..+.+.++++.+.+.. ...+ ..++..++..+|++++|+++||+|||++++++.+
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 95 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV 95 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35566678889999999999999999999997543221 1111 2477788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHH--------HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhh
Q 022246 180 PLAAGAFLCATAQSVQT--------MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL 251 (300)
Q Consensus 180 ~~~~~~~~~~~~~~~~~--------l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 251 (300)
+++++.+++++++|+.. ++++|+++|++.|+.++....+++|++|+++||++.++...+..+|..+++.+..
T Consensus 96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~ 175 (490)
T PRK10642 96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV 175 (490)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 7899999999999999999999999999999999999999888888877776554
Q ss_pred hccC-------CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHH
Q 022246 252 PLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLF 289 (300)
Q Consensus 252 ~~~~-------~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~ 289 (300)
.+.. ...|||+.|++.+++.++..++...+||+|++..
T Consensus 176 ~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~ 220 (490)
T PRK10642 176 LISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQ 220 (490)
T ss_pred HHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHH
Confidence 3321 1379999999987766655556667899987654
No 8
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.91 E-value=3.8e-23 Score=190.09 Aligned_cols=194 Identities=22% Similarity=0.307 Sum_probs=165.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh-----CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHH
Q 022246 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-----GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173 (300)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~ 173 (300)
.+..+.++.++.++.+.++++...++...+.+..++ +.+..+. +++.+.+.++..++.+++|+++||+|||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~ 88 (502)
T TIGR00887 11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVS--AAVNGSASIGTLAGQLFFGWLADKLGRKRV 88 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 344566777888899999999999999888887753 2233344 789999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHhhh------HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH
Q 022246 174 FQLDAVPLAAGAFLCATAQS------VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (300)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 247 (300)
+..+.+++.++.++++++++ ++.++++|++.|++.|+.++....+++|++|+++|++++++......+|.++++
T Consensus 89 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 89 YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888765 788999999999999999999999999999999999999999999999999888
Q ss_pred HhhhhccC----------------------CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcCc
Q 022246 248 VAGLPLAG----------------------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLH 294 (300)
Q Consensus 248 ~~~~~~~~----------------------~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~ 294 (300)
.++..+.. ...+||+.|.+.++..++.++..+++||+|+|+..+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~ 237 (502)
T TIGR00887 169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKD 237 (502)
T ss_pred HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcc
Confidence 88765421 114799999988888887777888899999998765554
No 9
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.4e-23 Score=180.26 Aligned_cols=177 Identities=23% Similarity=0.270 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
+..++.+.++.|..+....+....+|.+.+|+|+|..+. |+..++|.++..++.++...++||+.||++++..+.++.
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a--G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi 89 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI 89 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 555666677788888888899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (300)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~ 262 (300)
++.+++++++||+.+++.|++.|+..|.++++...+..++.|+++|+++++++.++..++.++|..++.++.+. .|||+
T Consensus 90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~-~GWR~ 168 (394)
T COG2814 90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL-FGWRA 168 (394)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH-hhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 99999
Q ss_pred HHHHhHHHHHHHHH-HhhcCC
Q 022246 263 MFGLAAIPSILLAL-GMGLSP 282 (300)
Q Consensus 263 ~f~~~~~~~~~~~~-~~~~~p 282 (300)
.|++.++++++..+ .+..+|
T Consensus 169 ~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 169 TFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 99999999987766 555678
No 10
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.91 E-value=1.9e-22 Score=180.62 Aligned_cols=186 Identities=26% Similarity=0.390 Sum_probs=167.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhH
Q 022246 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (300)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~ 179 (300)
++.|..++++++..+..+++....+...|.+.+++|.++.+. +++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM--GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 466778888888899999999999999999999999999888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 022246 180 PLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (300)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 259 (300)
+.+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++++++.+.+. .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~ 167 (406)
T PRK11551 89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD-AA 167 (406)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877665 78
Q ss_pred hHHHHHHhHHHHHHHHH-HhhcCCCChhHH
Q 022246 260 WRTMFGLAAIPSILLAL-GMGLSPESPRWL 288 (300)
Q Consensus 260 w~~~f~~~~~~~~~~~~-~~~~~pe~~~~~ 288 (300)
||+.|++.+++.++..+ ..+++||++++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 197 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFA 197 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 99999998876655544 445678887654
No 11
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.90 E-value=2e-22 Score=181.88 Aligned_cols=188 Identities=18% Similarity=0.226 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhC---CChhhh-HHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH
Q 022246 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG---IAENTV-LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL 176 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~-~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~ 176 (300)
+++..+...+++.++.+++...++...|.+.++++ .+..+. ..+...+...++..++++++|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34556666677888999999999999999999985 444332 11223344455556999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHH
Q 022246 177 DAVPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALV 248 (300)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 248 (300)
+.++++++.+++++++++. .++++|+++|++.|+.++....++.|++|+++|+++.++...+...|.+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764 58899999999999999999999999999999999999988888888887776
Q ss_pred hhhhccC-------CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHH
Q 022246 249 AGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWL 288 (300)
Q Consensus 249 ~~~~~~~-------~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~ 288 (300)
+...+.. ...|||+.|++.+++.++..++...+||++++.
T Consensus 179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~ 225 (432)
T PRK10406 179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE 225 (432)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 6544321 137899999998887776665656678877643
No 12
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.90 E-value=2.5e-22 Score=180.88 Aligned_cols=184 Identities=22% Similarity=0.323 Sum_probs=160.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHH
Q 022246 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~ 180 (300)
..+..+..+++..+..+++.....+..+.+.+++|+++.+. ++..+++.++..++++++|+++||+|||++++.+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG--AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 33455667777888888888888999999999999999888 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (300)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w 260 (300)
.+++.++++++++++.++++|++.|++.+..++....++.|++|+++|+++.++...+..+|.++++.+.+.+.+. .+|
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~-~~w 171 (426)
T PRK12307 93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA-YGW 171 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc-CCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988887765 799
Q ss_pred HHHHHHhHHHHHHHHHHhhcCCCChhH
Q 022246 261 RTMFGLAAIPSILLALGMGLSPESPRW 287 (300)
Q Consensus 261 ~~~f~~~~~~~~~~~~~~~~~pe~~~~ 287 (300)
|+.|++.++..++...+....||++++
T Consensus 172 ~~~f~i~~~~~~~~~~~~~~~p~~~~~ 198 (426)
T PRK12307 172 RAAFFVGLLPVLLVIYIRARAPESKEW 198 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCChHH
Confidence 999998655444333333345776654
No 13
>PRK03545 putative arabinose transporter; Provisional
Probab=99.90 E-value=1.1e-22 Score=181.27 Aligned_cols=177 Identities=20% Similarity=0.170 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH
Q 022246 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (300)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~ 185 (300)
++.+.+..+..........+..|.+.+++|.+..+. ++..+.+.+++.++++++|+++||+|||+++..+.++++++.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 88 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV--GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASH 88 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 333333334433333445557899999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 022246 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (300)
Q Consensus 186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~ 265 (300)
+++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+++.+.+. .|||+.|+
T Consensus 89 ~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-~gw~~~f~ 167 (390)
T PRK03545 89 VLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-LGWRTTFL 167 (390)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-hcHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999988765 79999999
Q ss_pred HhHHHHHHHHHH-hhcCCCCh
Q 022246 266 LAAIPSILLALG-MGLSPESP 285 (300)
Q Consensus 266 ~~~~~~~~~~~~-~~~~pe~~ 285 (300)
+.+++.++..+. ..++||.+
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 168 AIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 998887666543 34456543
No 14
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=180.01 Aligned_cols=187 Identities=20% Similarity=0.144 Sum_probs=172.2
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH
Q 022246 97 KSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL 176 (300)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~ 176 (300)
..++.++.++..+++++..+++....++.+.|++.++.++|.++. |++.+.+.+.+.++.++.|.++||.+.|+.+..
T Consensus 22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l--G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~ 99 (448)
T COG2271 22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL--GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence 445667888999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhh--hhcc
Q 022246 177 DAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG--LPLA 254 (300)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~~ 254 (300)
++++.++..++++++++.+.+.++.++.|+++|...|.+...++.+|+++|||+..++++.+.++|+.+.|++. +.+.
T Consensus 100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~ 179 (448)
T COG2271 100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA 179 (448)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888 7776
Q ss_pred CCCCchHHHHHHhHHHHHHHHHH-hhcCCCChh
Q 022246 255 GNPLWWRTMFGLAAIPSILLALG-MGLSPESPR 286 (300)
Q Consensus 255 ~~~~~w~~~f~~~~~~~~~~~~~-~~~~pe~~~ 286 (300)
.+ .+||..|++.++++++..++ ++.++++|+
T Consensus 180 ~~-~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 180 FH-GGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred hc-cchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 65 69999999999999776664 455677764
No 15
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.90 E-value=1e-22 Score=185.21 Aligned_cols=188 Identities=44% Similarity=0.727 Sum_probs=159.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCC--------hhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc
Q 022246 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIA--------ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170 (300)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr 170 (300)
.++.+....++.+..+...++...+....+.+..+++.+ ..+. +++.+++.++.+++++++|+++||+||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~g~l~d~~gr 100 (481)
T TIGR00879 23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLW--GLVVSIFLVGGFIGALFAGWLSDRFGR 100 (481)
T ss_pred cHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHH--HHHHHHHHHHHHHHHHHhhHhhhhhhh
Confidence 344455555666677777777888888888888888887 5566 999999999999999999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH
Q 022246 171 TRTFQLDAVPLAAGAFLCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (300)
Q Consensus 171 r~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 247 (300)
|++++.+.++++++.+++.+. .+++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++
T Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 180 (481)
T TIGR00879 101 KKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999998888554 34568999999999999999999999999999999999999999999999999999
Q ss_pred Hhh---hhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHH
Q 022246 248 VAG---LPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLF 289 (300)
Q Consensus 248 ~~~---~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~ 289 (300)
+++ ...... .+||+.|++.++..++.++..+++||+|++..
T Consensus 181 ~~~~~~~~~~~~-~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~ 224 (481)
T TIGR00879 181 GFGSGKVSLNNT-LGWRIPLGLQLIPAGLLFLGLFFLPESPRWLV 224 (481)
T ss_pred HHHHHhhcCCCC-ccHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 998 555444 79999999977777777677778899876543
No 16
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.90 E-value=4.7e-22 Score=177.37 Aligned_cols=180 Identities=22% Similarity=0.179 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
|..+..+.+..+............+|.+.+++|.++.+. ++..+++.++..+++++.|+++||+|||++++.+.++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~ 96 (394)
T PRK10213 19 WSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA--GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLT 96 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 444444444444444444454557788999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (300)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~ 262 (300)
++.++++++++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.+++|.+++.+.+. .+||+
T Consensus 97 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~-~gw~~ 175 (394)
T PRK10213 97 LSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL-IGWRN 175 (394)
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876 79999
Q ss_pred HHHHhHHHHHHHHHHh-hcCCCCh
Q 022246 263 MFGLAAIPSILLALGM-GLSPESP 285 (300)
Q Consensus 263 ~f~~~~~~~~~~~~~~-~~~pe~~ 285 (300)
.|++.+++.+++.+.. ..+||++
T Consensus 176 ~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 176 VFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
Confidence 9999887776655433 3467754
No 17
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.90 E-value=4.1e-22 Score=178.77 Aligned_cols=179 Identities=17% Similarity=0.220 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHH
Q 022246 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (300)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~ 184 (300)
......+..+...+....+.+.+|.+.+++|.+.... ++..+++.++++++++++|+++||+|||++++.+.++++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 94 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA--PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA 94 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH
Confidence 3344455566666777788889999999999999888 89999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 022246 185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (300)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f 264 (300)
.++++++++++.++++|+++|++.+...+....++.|.+|+++|+++++++.....+|..++|++++.+.+. .+||+.|
T Consensus 95 ~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-~gw~~~f 173 (413)
T PRK15403 95 CAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-VHWKVLF 173 (413)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHH
Confidence 999999999999999999999998877777788899999999999999999999999999999999988765 7999999
Q ss_pred HHhHHHHHHHHHH-hhcCCCChh
Q 022246 265 GLAAIPSILLALG-MGLSPESPR 286 (300)
Q Consensus 265 ~~~~~~~~~~~~~-~~~~pe~~~ 286 (300)
++.+++.++..+. ++++||+++
T Consensus 174 ~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 174 AIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcc
Confidence 9998887776554 455788653
No 18
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.90 E-value=3.1e-22 Score=180.82 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
+.++...++..+..+++...++...|.+.+++|++..+. +++.+.+.+++.+++++.|+++||+|||+++.++.++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 22 RHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI--GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 345555666667777777777888999999999999888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (300)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~ 262 (300)
++.++++++++++.+++.|++.|++.|..++....++.|++|+++|++++++++.+..+|.++++++++.+.+. .+||+
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw~~ 178 (434)
T PRK11663 100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH-YGWRY 178 (434)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999988766 78999
Q ss_pred HHHHhHHHHHHHH-HHhhcCCCChh
Q 022246 263 MFGLAAIPSILLA-LGMGLSPESPR 286 (300)
Q Consensus 263 ~f~~~~~~~~~~~-~~~~~~pe~~~ 286 (300)
.|++.+++.++.. +..+++||+|+
T Consensus 179 ~f~~~~i~~~~~~~~~~~~~~~~p~ 203 (434)
T PRK11663 179 GMMIAGIIAIVVGLFLCWRLRDKPQ 203 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHh
Confidence 9999887765543 34455677664
No 19
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.89 E-value=1.8e-21 Score=178.73 Aligned_cols=184 Identities=20% Similarity=0.333 Sum_probs=163.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHH
Q 022246 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~ 180 (300)
..+..+..+++..+...++.....+..|.+.+++|++..+. +++.+.+.+++.++.++.|+++||+|||++++.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA--ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 44566777778888888888888889999999999999888 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (300)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w 260 (300)
.+++.+++++.++++.+++.|++.|++.++.++....++.|.+|+++|++++++...+..+|..+++.+++.+.+. .+|
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w 173 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV-WGW 173 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988776 899
Q ss_pred HHHHHHhHHHHHHHHHHhhcCCCChhH
Q 022246 261 RTMFGLAAIPSILLALGMGLSPESPRW 287 (300)
Q Consensus 261 ~~~f~~~~~~~~~~~~~~~~~pe~~~~ 287 (300)
|+.|++.++..++.++....+||++++
T Consensus 174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~ 200 (496)
T PRK03893 174 RALFFIGILPIIFALWLRKNLPEAEDW 200 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 999988655544444444557776554
No 20
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.89 E-value=3.2e-22 Score=176.45 Aligned_cols=165 Identities=16% Similarity=0.091 Sum_probs=138.2
Q ss_pred HHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHH
Q 022246 119 HLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMI 198 (300)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (300)
....+++..|.+.+++|++..+. +++.+.+.+++.+++++.|+++||+|||++++.+.+....+.+.....++++.++
T Consensus 6 ~~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDVSKEEL--GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLL 83 (368)
T ss_pred HHHHHHhhHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34466789999999999999988 9999999999999999999999999999987766555544433333347999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH-H
Q 022246 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-G 277 (300)
Q Consensus 199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~ 277 (300)
++|++.|++.+. .......++|++|+++|++++++...+..+|.++++++++.+.+. .|||+.|++.++++++..+ .
T Consensus 84 ~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 84 ACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA-GGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHH
Confidence 999999999886 556666779999999999999999999999999999999998875 8999999998887766544 5
Q ss_pred hhcCCCChhH
Q 022246 278 MGLSPESPRW 287 (300)
Q Consensus 278 ~~~~pe~~~~ 287 (300)
++++||+|++
T Consensus 162 ~~~lp~~p~~ 171 (368)
T TIGR00903 162 LAALPALPFQ 171 (368)
T ss_pred HHHcCCCCCC
Confidence 5668987654
No 21
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.88 E-value=2.1e-22 Score=183.55 Aligned_cols=184 Identities=16% Similarity=0.078 Sum_probs=156.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhH
Q 022246 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (300)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~ 179 (300)
+..+.++.++++.++..+.+...++...|.+.+++|++..+. |++.+.+.++++++++++|+++||+|||+++..+.+
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~ 102 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL--GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI 102 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence 345667777788888888888889999999999999999988 999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHH-----hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246 180 PLAAGAFLCAT-----AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (300)
Q Consensus 180 ~~~~~~~~~~~-----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (300)
++++..++.+. +++++.++++|++.|++.+...+....+++|++|+++||+++|++..+..+|.++++++...+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 88887776655 5899999999999999999999999999999999999999999999999999999988876554
Q ss_pred CC--CCchHHHHHHhHHHHHHHHHH-hhcCCCCh
Q 022246 255 GN--PLWWRTMFGLAAIPSILLALG-MGLSPESP 285 (300)
Q Consensus 255 ~~--~~~w~~~f~~~~~~~~~~~~~-~~~~pe~~ 285 (300)
.. ..+||..|.+.+++.++..+. +++.++.|
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p 216 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSP 216 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 32 136999998888777665443 34445554
No 22
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.88 E-value=6e-21 Score=174.22 Aligned_cols=175 Identities=12% Similarity=0.117 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHH
Q 022246 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (300)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~ 184 (300)
.+...+...+...+......+..|.+.+++|++.++. +++.+.+.+++.++++++|+++||+|||+++..+.++++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~ 114 (476)
T PLN00028 37 AFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI--GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA 114 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3333344444445555566778899999999999888 88999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc----C----C
Q 022246 185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA----G----N 256 (300)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~----~ 256 (300)
.++++++++++.++++|++.|++.+.. .....+++|++|+++||+++++.+....+|..+++.+.+.+. . .
T Consensus 115 ~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 193 (476)
T PLN00028 115 VFCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPS 193 (476)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999988764 445668899999999999999988777777766655554332 1 1
Q ss_pred CCchHHHHHHhHHHHHHHHHHhhcCC
Q 022246 257 PLWWRTMFGLAAIPSILLALGMGLSP 282 (300)
Q Consensus 257 ~~~w~~~f~~~~~~~~~~~~~~~~~p 282 (300)
..|||+.|++.+++.++..+..++++
T Consensus 194 ~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 194 FTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 25899999999988877665554443
No 23
>PRK09952 shikimate transporter; Provisional
Probab=99.88 E-value=5.9e-21 Score=172.62 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHh--CCChhhhHHHHHH-----HHHHHHHHHHHhhhhhhccccCchHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALE-YLAKDL--GIAENTVLQGWIV-----SSLLAGATVGSFTGGSLADKFGRTRTF 174 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~s~~~~~~~~~~-----~~~~i~~~i~~~~~g~lsd~~Grr~~~ 174 (300)
+..+...++..+.++++...+....+ .+.+++ +.++.. ++.. ++..++..+++++.|+++||+|||+++
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l 97 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence 34666777788889999998887776 455555 666553 4433 344566788999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHH
Q 022246 175 QLDAVPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAA 246 (300)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 246 (300)
+.+.++++++.+++++++++. .++++|+++|++.|+.++....++.|++|+++|++..+....+..+|.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~ 177 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS 177 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 588899999999999999999999999999999999999999999998888
Q ss_pred HHhhhhccC-------CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHh
Q 022246 247 LVAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290 (300)
Q Consensus 247 ~~~~~~~~~-------~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~ 290 (300)
..+...+.. ...+||+.|++.+++.++...+....||++++...
T Consensus 178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~ 228 (438)
T PRK09952 178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQ 228 (438)
T ss_pred HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Confidence 766655431 13789999999887765554455567898876543
No 24
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.88 E-value=9.2e-22 Score=180.04 Aligned_cols=178 Identities=26% Similarity=0.375 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHH
Q 022246 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (300)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~ 184 (300)
++..+++..+...++....+...|.+.+++|.+..+. +++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3456667778888888899999999999999998888 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 022246 185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (300)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f 264 (300)
.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++++..+..+|..++|.+++.+.+. .+||+.|
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~w~~~f 159 (485)
T TIGR00711 81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN-YHWRWIF 159 (485)
T ss_pred HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC-cCceehh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876 8999999
Q ss_pred HHhHHHHHHHHHH-hhcCCCCh
Q 022246 265 GLAAIPSILLALG-MGLSPESP 285 (300)
Q Consensus 265 ~~~~~~~~~~~~~-~~~~pe~~ 285 (300)
++.+++.++..+. .+++||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCcc
Confidence 9988877665543 34456543
No 25
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.88 E-value=3.6e-21 Score=171.08 Aligned_cols=176 Identities=20% Similarity=0.201 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (300)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~ 186 (300)
....+..+...+......+.+|.+.+++|.+..+. ++..+.+.+++.++++++|+++||+|||+++..+.++.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA--GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH--hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 34445555666666677788999999999998888 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHH
Q 022246 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL 266 (300)
Q Consensus 187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~ 266 (300)
+++++++++.+++.|++.|++.+...+....++.|++++++|+++++++..+..+|..++|.+++.+.+. .+||+.|++
T Consensus 84 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~gwr~~f~~ 162 (382)
T PRK10091 84 MFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE-FSWRYTFLL 162 (382)
T ss_pred HHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-ccHHHHHHH
Confidence 9999999999999999999999988888888999999999999999999999999999999999888765 789999999
Q ss_pred hHHHHHHHHH-HhhcCCCCh
Q 022246 267 AAIPSILLAL-GMGLSPESP 285 (300)
Q Consensus 267 ~~~~~~~~~~-~~~~~pe~~ 285 (300)
.+++.++..+ ..+++||.+
T Consensus 163 ~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 163 IAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 9887766554 344577753
No 26
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.88 E-value=2.1e-21 Score=169.96 Aligned_cols=172 Identities=30% Similarity=0.452 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH
Q 022246 110 CLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188 (300)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~ 188 (300)
++..++..+......+..+ ++.+++|.+..+. +++.+++.++..++.+++|+++||+|||++++.+.++.+++.++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI--GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH--HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 3445555666667777888 8999999999998 999999999999999999999999999999999999999996666
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (300)
Q Consensus 189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~ 268 (300)
.++++.+.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|++.+
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~~~~~~~~~~~ 158 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-FGWRWAFLISA 158 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-CHHCCHHHHHH
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc-ccccccccccc
Confidence 66688889999999999999999999999999999999999999999999999999999999999855 88999999999
Q ss_pred HHHHHHHHH-hhcCCCC
Q 022246 269 IPSILLALG-MGLSPES 284 (300)
Q Consensus 269 ~~~~~~~~~-~~~~pe~ 284 (300)
++.++..++ .++++++
T Consensus 159 ~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEP 175 (352)
T ss_dssp HHHHHHHHHHHCCC---
T ss_pred chhhhhhhhHhhhhhhc
Confidence 998877664 3444433
No 27
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.87 E-value=3.7e-21 Score=172.32 Aligned_cols=185 Identities=21% Similarity=0.182 Sum_probs=162.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHh
Q 022246 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA 178 (300)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~ 178 (300)
+++.+.....+.+..+...+....+.+..+.+.+++|.+..+. ++..+.+.+++.++.++.|+++||+|||+++..+.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 85 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV--PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV 85 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 4566777777777888777778888888899999999998888 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 022246 179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL 258 (300)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 258 (300)
++.+++.++++++++++.+++.|++.|++.+...+....++.|.+|+++|+++.++......+|..++|.+++.+.+. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~ 164 (406)
T PRK15402 86 AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV-L 164 (406)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c
Confidence 999999999999999999999999999999888888999999999999999999998888888999999999888765 7
Q ss_pred chHHHHHHhHHHHHHHHHH-hhcCCCChh
Q 022246 259 WWRTMFGLAAIPSILLALG-MGLSPESPR 286 (300)
Q Consensus 259 ~w~~~f~~~~~~~~~~~~~-~~~~pe~~~ 286 (300)
+||+.|++.+++.++..+. ++..||+++
T Consensus 165 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 165 PWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 8999999988887666553 445677643
No 28
>PRK15075 citrate-proton symporter; Provisional
Probab=99.87 E-value=1e-20 Score=170.93 Aligned_cols=184 Identities=19% Similarity=0.232 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHH-----HHHHHHHHhhhhhhccccCchHHHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSL-----LAGATVGSFTGGSLADKFGRTRTFQLD 177 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-----~i~~~i~~~~~g~lsd~~Grr~~~~~~ 177 (300)
+.....++++.++.+++...++...|.+.++++.++.+.. .+..+.. .++..+++++.|+++||+|||++++.+
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA-SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 3457777889999999999999999999999998776641 2222222 223357889999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHh
Q 022246 178 AVPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA 249 (300)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 249 (300)
.++++++.++++++++++ .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.+
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877 468899999999999888889999999999999999999988888887777777
Q ss_pred hhhccC-------CCCchHHHHHHhHHHHHHHHHHhhcCCCChhH
Q 022246 250 GLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRW 287 (300)
Q Consensus 250 ~~~~~~-------~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~ 287 (300)
++.+.. ...|||+.|++.++..++..+.....||++++
T Consensus 173 g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~ 217 (434)
T PRK15075 173 GYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEF 217 (434)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 766521 23789999998655443333333446776543
No 29
>PRK03699 putative transporter; Provisional
Probab=99.87 E-value=1.1e-20 Score=168.50 Aligned_cols=176 Identities=13% Similarity=0.133 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
+++...+++..+..+......+...|.+.+++|++..+. +++.+.+.+++.++.+++|+++||+|||++++.+.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM--SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345555666777777777778888999999999999888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (300)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~ 262 (300)
++.++++++++++.++++|++.|++.+...+....++.|.+|+++|+.++++.+....+|..++|.+.+.+.....+||+
T Consensus 84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~ 163 (394)
T PRK03699 84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW 163 (394)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 99999999999999999999999999988888999999999999999999998888888998999888776554479999
Q ss_pred HHHHhHHHHHHHHHHhhc
Q 022246 263 MFGLAAIPSILLALGMGL 280 (300)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~ 280 (300)
.|++.+++.++..++.++
T Consensus 164 ~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK03699 164 VYACIGLVYVAIFILTLF 181 (394)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999988877665554433
No 30
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.87 E-value=7.9e-21 Score=174.98 Aligned_cols=195 Identities=42% Similarity=0.692 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHhCCCh---hh--hHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH
Q 022246 103 LPFVGVACLGAILFGYH--LGVVNGALEYLAKDLGIAE---NT--VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~---~~--~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~ 175 (300)
........+..+..+++ .+..+.....+.+...... +. ...+|+.+.+.++..++++++|+++|++|||+.++
T Consensus 44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~ 123 (513)
T KOG0254|consen 44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL 123 (513)
T ss_pred HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444445555555554 3455556666666432111 11 12279999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 176 LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
++.+++.++.+++++++|+.+++++|++.|+|.|+...+.+.+++|..|++.||...++......+|..++..++.....
T Consensus 124 ~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~ 203 (513)
T KOG0254|consen 124 LAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK 203 (513)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999665555432
Q ss_pred CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcCcccc
Q 022246 256 NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDYI 297 (300)
Q Consensus 256 ~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~ 297 (300)
...+||..+++..+.+++.++..+++||+|+|+.++++.++.
T Consensus 204 ~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a 245 (513)
T KOG0254|consen 204 VYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEA 245 (513)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHH
Confidence 114899999999999988888888899999999987776554
No 31
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.87 E-value=7.9e-21 Score=168.59 Aligned_cols=170 Identities=22% Similarity=0.298 Sum_probs=151.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh
Q 022246 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ 192 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~ 192 (300)
.+........+.+..|.+.+++|.+..+. +++.+.+.++..++.+++|+++||+|||+++..+.++.+++.+++++++
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 91 (385)
T TIGR00710 14 SILGPLGIDMYLPAFPEIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN 91 (385)
T ss_pred HHHHHHHHHHhcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 34445566677788999999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (300)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 272 (300)
+++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.+. .+||+.|++.+++.+
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~ 170 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW-LSWHAIFAFLSLAGI 170 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988765 789999999888776
Q ss_pred HHHHH-hhcCCCCh
Q 022246 273 LLALG-MGLSPESP 285 (300)
Q Consensus 273 ~~~~~-~~~~pe~~ 285 (300)
+..+. .++.||++
T Consensus 171 ~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 171 LLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHHhCCCCC
Confidence 65544 44566654
No 32
>TIGR00895 2A0115 benzoate transport.
Probab=99.87 E-value=5.2e-21 Score=170.16 Aligned_cols=184 Identities=26% Similarity=0.368 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHH
Q 022246 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~ 180 (300)
..+..+..+++..+..++......+..|.+.+++|.+..+. +++.+++.++..++.++.|+++||+|||+++..+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 34555566666677777777778889999999999998888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (300)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w 260 (300)
.+++.++.++.++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+. .+|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~ 170 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV-FGW 170 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988776 789
Q ss_pred HHHHHHhHHHHHHH-HHHhhcCCCChhH
Q 022246 261 RTMFGLAAIPSILL-ALGMGLSPESPRW 287 (300)
Q Consensus 261 ~~~f~~~~~~~~~~-~~~~~~~pe~~~~ 287 (300)
++.|++.+++.++. .+..+++||++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESIDF 198 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCChH
Confidence 99999986555444 4455667877543
No 33
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.87 E-value=1.1e-20 Score=168.54 Aligned_cols=171 Identities=15% Similarity=0.183 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
|......++..+.... ....++..|.+++++|++.++. +++.+++.+++.+++++.|+++||+|||+++..+.++++
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~ 85 (393)
T PRK09705 9 FMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVA--ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA 85 (393)
T ss_pred HHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence 4444444444433322 3466789999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (300)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~ 262 (300)
++.++++++++++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+.+...+||+
T Consensus 86 ~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~ 164 (393)
T PRK09705 86 VGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ 164 (393)
T ss_pred HHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999997 7899999999999999999999998887765458999
Q ss_pred HHHHhHHHHHHHHHH
Q 022246 263 MFGLAAIPSILLALG 277 (300)
Q Consensus 263 ~f~~~~~~~~~~~~~ 277 (300)
.+.+.++..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (393)
T PRK09705 165 TLAWWALPAVVALFA 179 (393)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887766655444333
No 34
>TIGR00898 2A0119 cation transport protein.
Probab=99.86 E-value=1.1e-21 Score=180.58 Aligned_cols=164 Identities=25% Similarity=0.400 Sum_probs=148.4
Q ss_pred hhHHHHHHHhCCC---hhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHH
Q 022246 125 GALEYLAKDLGIA---ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGR 201 (300)
Q Consensus 125 ~~~~~~~~~~~~s---~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (300)
...+.+.+|+|++ ..+. ++..+++.++..++.+++|+++||+|||++++++.++.+++.++.+++++++.++++|
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~--~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r 187 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKV--DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR 187 (505)
T ss_pred cccccEEEEecceechHHHH--HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3567788899998 6666 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 281 (300)
++.|++.++..+....++.|++|+++|+.+.++...+..+|.++++++++.+. +||+.|++.++..++..+.++++
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999987763 39999999999888777777889
Q ss_pred CCChhHHHhhcCc
Q 022246 282 PESPRWLFQVFLH 294 (300)
Q Consensus 282 pe~~~~~~~~~~~ 294 (300)
||+|+|+..+++.
T Consensus 264 ~esp~~l~~~~~~ 276 (505)
T TIGR00898 264 PESPRWLISQGRI 276 (505)
T ss_pred CCChHHHHHCCCH
Confidence 9999887655443
No 35
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.86 E-value=1.5e-21 Score=177.96 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=160.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----------------------HhCCChhhhHHHHHHHHHHHHHH
Q 022246 98 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAK----------------------DLGIAENTVLQGWIVSSLLAGAT 155 (300)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~~~~~~~i~~~ 155 (300)
..+.++.++.+++++....+.+...++...+.+.+ +++++..+. |++.+.+.+++.
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~ 90 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ--GLILSSHFYGQI 90 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh--hHHHHHHHHHHH
Confidence 45556777788888888888888888887777766 788888887 999999999999
Q ss_pred HHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHH
Q 022246 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233 (300)
Q Consensus 156 i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 233 (300)
++++++|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|+++++
T Consensus 91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 170 (465)
T TIGR00894 91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG 170 (465)
T ss_pred HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999998888876544 567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc-CCCCh
Q 022246 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-SPESP 285 (300)
Q Consensus 234 ~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~-~pe~~ 285 (300)
+...+..+|.++++++++.+.+...+||+.|++.+++.++..+++++ .+|+|
T Consensus 171 ~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p 223 (465)
T TIGR00894 171 MSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDP 223 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999988765248999999999888776665544 45544
No 36
>PRK10504 putative transporter; Provisional
Probab=99.86 E-value=2.1e-20 Score=170.57 Aligned_cols=175 Identities=24% Similarity=0.301 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH
Q 022246 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (300)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~ 185 (300)
+.++++..++..++...+++..|.+.+++|.+..+. +++.+.+.++.+++.+++|+++||+|||++++.+.++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM--HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 344455666677777788889999999999999888 899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 022246 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (300)
Q Consensus 186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~ 265 (300)
++++++++++.+++.|+++|++.+...+....++.|.+|+++|+++.++......+|..++|.+++.+.+. .+||+.|+
T Consensus 90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-~gw~~~f~ 168 (471)
T PRK10504 90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-ASWHWIFL 168 (471)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-ccHHHHHH
Confidence 98899999999999999999999999999999999999999999999999999999999999999998876 78999999
Q ss_pred HhHHHHHHHHHHh-hcCCC
Q 022246 266 LAAIPSILLALGM-GLSPE 283 (300)
Q Consensus 266 ~~~~~~~~~~~~~-~~~pe 283 (300)
+..++.++..+.. ...|+
T Consensus 169 ~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 169 INIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9887766555443 33454
No 37
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.86 E-value=2.6e-20 Score=166.16 Aligned_cols=178 Identities=17% Similarity=0.219 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHH
Q 022246 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (300)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~ 184 (300)
.+.+.........+....+.+..|.+.+++|.++.+. +++.+.+.++..++++++|+++||+|||++++.+.++.+++
T Consensus 9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 86 (394)
T PRK11652 9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV--QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILG 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence 3333333444444556677778899999999999988 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 022246 185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (300)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f 264 (300)
.+++.++++++.+++.|++.|++.+...+....++.|.++.++|+.+.++...+..+|..++|.+++.+.+. .+||+.|
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~~f 165 (394)
T PRK11652 87 TLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-FGWRACY 165 (394)
T ss_pred HHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHH
Confidence 999999999999999999999998888888888999999999999999999999999999999999988765 7899999
Q ss_pred HHhHHHHHHHHH-HhhcCCCCh
Q 022246 265 GLAAIPSILLAL-GMGLSPESP 285 (300)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~pe~~ 285 (300)
++.+++.++..+ ..+++||++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 166 LFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCccC
Confidence 998877665443 445677764
No 38
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.86 E-value=3.8e-21 Score=170.49 Aligned_cols=169 Identities=22% Similarity=0.226 Sum_probs=151.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhh
Q 022246 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS 193 (300)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~ 193 (300)
+..+++...++...|.+.+++|.+..+. +++.+++.++..++.+++|+++||+|||+++..+.++.+++.++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 81 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA 81 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhhH--HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence 3445566677888899999999999888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH
Q 022246 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (300)
Q Consensus 194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~ 273 (300)
++.++++|++.|++.+...+....++.|++|+++|++++++......+|.++++.+++.+.+. .+||+.|++.+++.++
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH-FSWQWAFIIEGVLGII 160 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987766 7899999998888766
Q ss_pred HHHHh-hcCCCCh
Q 022246 274 LALGM-GLSPESP 285 (300)
Q Consensus 274 ~~~~~-~~~pe~~ 285 (300)
..+.. ++.||++
T Consensus 161 ~~~~~~~~~~~~~ 173 (399)
T TIGR00893 161 WGVLWLKFIPDPP 173 (399)
T ss_pred HHHHhhheecCCC
Confidence 65544 4455544
No 39
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.86 E-value=9.2e-21 Score=167.24 Aligned_cols=161 Identities=20% Similarity=0.132 Sum_probs=138.8
Q ss_pred HHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHH
Q 022246 120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII 199 (300)
Q Consensus 120 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (300)
....++..|++.+++|++..+. +++.+++.++..++++++|+++||+|||+++..+.++.+++.++++++++++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAV--AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYL 96 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHh-
Q 022246 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM- 278 (300)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~- 278 (300)
+|++.|++.+..++.....+.+++| ++|+++.++...+..+|..+++.+.+.+.+. .+||+.|++.+++.++..+..
T Consensus 97 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 97 TYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL-EGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888899887 6799999999999999987655555454444 789999999988887665543
Q ss_pred hcCCCC
Q 022246 279 GLSPES 284 (300)
Q Consensus 279 ~~~pe~ 284 (300)
++++++
T Consensus 175 ~~~~~~ 180 (377)
T TIGR00890 175 FLIGYP 180 (377)
T ss_pred HheecC
Confidence 444443
No 40
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.86 E-value=1.3e-21 Score=180.77 Aligned_cols=160 Identities=28% Similarity=0.279 Sum_probs=143.4
Q ss_pred HHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q 022246 132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGIS 211 (300)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~ 211 (300)
+.++.+.... .+..+++.+|.++|++++|+++||+|||++++.++++.+++.++.++++|++.++++|++.|++.++.
T Consensus 111 ~~~c~~~~~~--~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 111 NLVCDSSTLV--ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGP 188 (521)
T ss_pred ceeeCcHhHH--HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccch
Confidence 4455555555 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhh
Q 022246 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQV 291 (300)
Q Consensus 212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~ 291 (300)
..+...+++|++++++|+.+..+ ......++.+++.+++++.. +|||.+|+..++.++.++.+++.||+|+|+..+
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK 264 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence 99999999999999999999999 77777777777777777764 699999999999988888877778999999988
Q ss_pred cCcccc
Q 022246 292 FLHDYI 297 (300)
Q Consensus 292 ~~~~~~ 297 (300)
++.++.
T Consensus 265 g~~~~a 270 (521)
T KOG0255|consen 265 GRIDEA 270 (521)
T ss_pred CchHHH
Confidence 776544
No 41
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.86 E-value=2.1e-20 Score=169.70 Aligned_cols=180 Identities=18% Similarity=0.187 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
|.++..+++.....+.+...+.+..|++.++ |++..+. +++.+.+.++.+++++++|+++||+|||++++.+.++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~--g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH--HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 4444445555555555555566788898888 9999888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHH-HHHHHhhhhccCCC
Q 022246 183 AGAFLCATAQ----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI-LAALVAGLPLAGNP 257 (300)
Q Consensus 183 ~~~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 257 (300)
++.+++++.+ +++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|. +++|+++..+...
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~- 183 (452)
T PRK11273 105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF- 183 (452)
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 9988887753 678889999999999998888888899999999999999999999998886 4566654333323
Q ss_pred CchHHHHHHhHHHHHHH-HHHhhcCCCChh
Q 022246 258 LWWRTMFGLAAIPSILL-ALGMGLSPESPR 286 (300)
Q Consensus 258 ~~w~~~f~~~~~~~~~~-~~~~~~~pe~~~ 286 (300)
.+||+.|++.+++.++. ++..+++||+++
T Consensus 184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~ 213 (452)
T PRK11273 184 NDWHAALYMPAFAAILVALFAFAMMRDTPQ 213 (452)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence 58999999988877664 445566787764
No 42
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.85 E-value=5.4e-20 Score=162.21 Aligned_cols=172 Identities=16% Similarity=0.126 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhCCChhh-hHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENT-VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (300)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~ 187 (300)
+|+..|+--+ ....+.+.|++.+++|++.++ . |.+.+++..++++++++.|+++||+|.|+++.++.+.+++..++
T Consensus 32 lC~fGF~~e~-R~n~s~a~p~L~~elglT~~qv~--G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L 108 (511)
T TIGR00806 32 LCFYGFMAQF-RPGESFITPYLLTVLNFTEETVT--NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLL 108 (511)
T ss_pred HHHHHHHHHh-hchHHHHHHHHHHHcCCCHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3333444333 556677889999999999998 6 99999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHh
Q 022246 188 CATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267 (300)
Q Consensus 188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~ 267 (300)
.+++.++..+.++|++.|++.|+.+ ....++..++|+++|+++.++...+..+|.++++++++++. . .|||+.+.+.
T Consensus 109 ~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s-~gWr~y~~Ln 185 (511)
T TIGR00806 109 LLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T-LGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cCchhHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999999999999999843 3 7898866544
Q ss_pred ---HHHHHHHHHHhhcCCCChh
Q 022246 268 ---AIPSILLALGMGLSPESPR 286 (300)
Q Consensus 268 ---~~~~~~~~~~~~~~pe~~~ 286 (300)
.....+.+++.+++|..++
T Consensus 186 ~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 186 IISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHHHHhCCCCch
Confidence 3333445566677885444
No 43
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.85 E-value=2.6e-20 Score=163.78 Aligned_cols=167 Identities=12% Similarity=0.015 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH
Q 022246 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT 190 (300)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~ 190 (300)
...++..+........+|.+..+++.+..+. +++.+++.++..++.+++|+++||+|||++++.+.++.+++.++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVL--SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566778888888999988888 99999999999999999999999999999999999998888888887
Q ss_pred hh-----hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 022246 191 AQ-----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (300)
Q Consensus 191 ~~-----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~ 265 (300)
.. +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~g~~~~~~ 162 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT-LGIKWAIW 162 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 77 9999999999999999999999999999999999999999999999999999999999998765 78999999
Q ss_pred HhHHHHHHHHHHhhc
Q 022246 266 LAAIPSILLALGMGL 280 (300)
Q Consensus 266 ~~~~~~~~~~~~~~~ 280 (300)
+.++..++..+..++
T Consensus 163 ~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 163 VDAVGFAISALLIVS 177 (365)
T ss_pred HHHHHHHHHHHHHHh
Confidence 988776665544433
No 44
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.85 E-value=5.1e-21 Score=168.95 Aligned_cols=170 Identities=19% Similarity=0.182 Sum_probs=149.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh
Q 022246 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ 192 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~ 192 (300)
++..+++...++...|++.+++|.+..+. +++.+++.++..++.+++|+++||+|||++++.+.++.+++.+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDL--GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHH--HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 44555667777888999999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH-HhhhhccCCCCchHHHHHHhHHHH
Q 022246 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL-VAGLPLAGNPLWWRTMFGLAAIPS 271 (300)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~w~~~f~~~~~~~ 271 (300)
+++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ ++++.+... .+||+.|++.+++.
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIA 160 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-CCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 566655544 78999999988777
Q ss_pred HHHHH-HhhcCCCCh
Q 022246 272 ILLAL-GMGLSPESP 285 (300)
Q Consensus 272 ~~~~~-~~~~~pe~~ 285 (300)
++..+ ..++.||++
T Consensus 161 ~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 161 IIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHheeeCCCc
Confidence 66544 445566654
No 45
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.85 E-value=5.3e-20 Score=164.09 Aligned_cols=172 Identities=23% Similarity=0.298 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH
Q 022246 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT 190 (300)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~ 190 (300)
...+........+.+.+|.+.+++|.+..+. ++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~ 87 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQL--HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL 87 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455678999999999999888 99999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHH
Q 022246 191 AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP 270 (300)
Q Consensus 191 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~ 270 (300)
+++++.+++.|++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|++++.+.+. .+||+.|++.+++
T Consensus 88 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-~g~~~~~~~~~~~ 166 (392)
T PRK10473 88 AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-FPWQSLFYTMAAM 166 (392)
T ss_pred hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cChHHHHHHHHHH
Confidence 999999999999999999998999999999999999999999999999999999999999887655 7899999998887
Q ss_pred HHHHHH-HhhcCCCCh
Q 022246 271 SILLAL-GMGLSPESP 285 (300)
Q Consensus 271 ~~~~~~-~~~~~pe~~ 285 (300)
.++..+ ..+++||++
T Consensus 167 ~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 167 GILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 766554 345567654
No 46
>PRK12382 putative transporter; Provisional
Probab=99.85 E-value=6.1e-20 Score=163.69 Aligned_cols=169 Identities=16% Similarity=0.187 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH-
Q 022246 112 GAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA- 189 (300)
Q Consensus 112 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~- 189 (300)
..+.......+..+.+| ++.+++|.+..+. +++.+.+.+++.++++++|+++||+|||++++.+.++..++.+...
T Consensus 23 ~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~--g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 100 (392)
T PRK12382 23 AVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV--GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLL 100 (392)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 33444444555566666 5788999999998 9999999999999999999999999999999998887766554322
Q ss_pred -------HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246 190 -------TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (300)
Q Consensus 190 -------~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~ 262 (300)
...+++.+++.|+++|++.+...+....++.|.+|+++|+++++++..+..+|..++|.+++.+... .||++
T Consensus 101 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~ 179 (392)
T PRK12382 101 AAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH-FGFAA 179 (392)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc-cChHH
Confidence 1357889999999999999988888889999999999999999999999999999999999888765 78999
Q ss_pred HHHHhHHHHHHHHHHhhcCCC
Q 022246 263 MFGLAAIPSILLALGMGLSPE 283 (300)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~pe 283 (300)
.+++..+..++..+.....||
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~ 200 (392)
T PRK12382 180 LALTTMVLPLLAWAFNGTVRK 200 (392)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 877765554443333333444
No 47
>PRK11043 putative transporter; Provisional
Probab=99.85 E-value=5.1e-20 Score=164.68 Aligned_cols=169 Identities=18% Similarity=0.224 Sum_probs=147.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh
Q 022246 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ 192 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~ 192 (300)
..+..+....+.+..+.+.+++|.+..+. ++..+++.++..++.+++|+++||+|||+++..+.++.+++.+++++++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAV--SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 33344555677777888999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (300)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 272 (300)
+++.+++.|++.|++.+...+....++.|.+++++++...+.......+|..++|++++.+.+. .+||+.|++.+++.+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~~~~~~~~~~~ 171 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH-FGWQAIFATLFAITL 171 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Confidence 9999999999999998888888888999999999999999998888899999999999998766 799999999888887
Q ss_pred HHHHHhhcCCCC
Q 022246 273 LLALGMGLSPES 284 (300)
Q Consensus 273 ~~~~~~~~~pe~ 284 (300)
+..+..++++|+
T Consensus 172 ~~~~~~~~~~~~ 183 (401)
T PRK11043 172 LLILPTLRLKPS 183 (401)
T ss_pred HHHHHHHHcCCC
Confidence 766655555543
No 48
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.85 E-value=8.8e-20 Score=163.01 Aligned_cols=172 Identities=17% Similarity=0.133 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246 109 ACLGAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (300)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~ 187 (300)
.++..+...++..+..+.+|. +.+++|.+..+. +++.+++.+++.+++++.|+++||+|||++++.+.++++++.+.
T Consensus 20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~ 97 (399)
T PRK05122 20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA--GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLL 97 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH--HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHH
Confidence 444555555556666667764 778999998888 99999999999999999999999999999999999888877665
Q ss_pred HHHh--------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 022246 188 CATA--------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (300)
Q Consensus 188 ~~~~--------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 259 (300)
++++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+++.+... .+
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~g 176 (399)
T PRK05122 98 YLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW-GG 176 (399)
T ss_pred HHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc-cc
Confidence 5443 25678899999999999999999999999999999999999999999999999999999988765 88
Q ss_pred hHHHHHHhHHHHHHHHHHhhcCCC
Q 022246 260 WRTMFGLAAIPSILLALGMGLSPE 283 (300)
Q Consensus 260 w~~~f~~~~~~~~~~~~~~~~~pe 283 (300)
|++.+++.+++.++..+.....|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~ 200 (399)
T PRK05122 177 LAGLGLLIMLLALLGLLLARPRPA 200 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999988877766554444443444
No 49
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.84 E-value=6.6e-20 Score=161.70 Aligned_cols=174 Identities=24% Similarity=0.234 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246 109 ACLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (300)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~ 187 (300)
.++..+........+.+..| ++++++|++..+. +++.+++.++++++++++|+++||+|||++++.+.++.+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~ 83 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL--GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW 83 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh--hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 33444444555557777888 5999999999988 99999999999999999999999999999999999999999999
Q ss_pred HHHhh-hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC---------CC
Q 022246 188 CATAQ-SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---------NP 257 (300)
Q Consensus 188 ~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~ 257 (300)
+++++ +++.+++.|++.|++.+ .+.....+++|++|+++|+++.++......+|..+++.+++.+.. ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 84 AGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred HHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999 99999999999999855 456778899999999999999999987777777777666655432 12
Q ss_pred CchHHHHHH-hHHHHHHH-HHHhhcCCCCh
Q 022246 258 LWWRTMFGL-AAIPSILL-ALGMGLSPESP 285 (300)
Q Consensus 258 ~~w~~~f~~-~~~~~~~~-~~~~~~~pe~~ 285 (300)
.+||+.|++ .+++.++. .+..++.+|++
T Consensus 163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (366)
T TIGR00886 163 LAWGWAFVIVPAGILLLPALLIFFVGADTP 192 (366)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence 489999944 34444333 33444455544
No 50
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.84 E-value=6.1e-20 Score=166.07 Aligned_cols=181 Identities=17% Similarity=0.137 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
+..+....+.....+.....+....|++++ +|++.++. +++.+++.++..++.+++|+++||+|||++++.+.++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL--GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh--HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 445555555666666656656667788876 59999988 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 022246 183 AGAFLCATA----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL 258 (300)
Q Consensus 183 ~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 258 (300)
++.++++.. .++..+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|..+++.+.+.......
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 182 (438)
T TIGR00712 103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN 182 (438)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence 888877654 4677788899999999998888889999999999999999999999999999888777655433336
Q ss_pred chHHHHHHhHHHHHHHH-HHhhcCCCChh
Q 022246 259 WWRTMFGLAAIPSILLA-LGMGLSPESPR 286 (300)
Q Consensus 259 ~w~~~f~~~~~~~~~~~-~~~~~~pe~~~ 286 (300)
+||+.|++.+++.++.. +.++++||+++
T Consensus 183 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~~ 211 (438)
T TIGR00712 183 DWHAALYFPAICAIIVALFAFAMMRDTPQ 211 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 89999999888876654 45566787664
No 51
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.83 E-value=1.5e-19 Score=164.14 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
|.++..+++...........++...+.+.+++|.+.++. +++.+.+.++..++.+++|+++||+|||++++.+.++.+
T Consensus 18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 95 (455)
T TIGR00892 18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET--AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS 95 (455)
T ss_pred hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH--HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence 555555555555444444456668899999999998888 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHH-HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchH
Q 022246 183 AGAFLCATAQSVQTMII-GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR 261 (300)
Q Consensus 183 ~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~ 261 (300)
++.++++++++++.+++ .|++.|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+.+. .|||
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~-~gwr 173 (455)
T TIGR00892 96 LGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES-FGWR 173 (455)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hChH
Confidence 99999999999988865 4689999988776777788889986 7899999999999999999999999888765 7999
Q ss_pred HHHHHhHHHHHHHHHHhhc
Q 022246 262 TMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 262 ~~f~~~~~~~~~~~~~~~~ 280 (300)
+.|++.+++.+++.+..++
T Consensus 174 ~~f~~~~~~~~~~~v~~~~ 192 (455)
T TIGR00892 174 GSFLILGGLLLHCCVCGAL 192 (455)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999887665554433
No 52
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.83 E-value=3e-19 Score=163.06 Aligned_cols=178 Identities=18% Similarity=0.144 Sum_probs=141.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc-cCchHHHHH
Q 022246 98 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQL 176 (300)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~ 176 (300)
+++..+.+++......+.++. .......|+.+++|++..+. +++.+.+.....+..+++|+++|| +|||++++.
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~---~~~~l~~yl~~~lg~~~~~a--~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~ 86 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYG---VQGILAVFFVKQLGFSQEQA--FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVL 86 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHH
Confidence 344444444443333333322 33446678889999998888 899999988888888999999999 999999999
Q ss_pred HhHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhhhhhhhhhhhhhhccCCccc--chhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246 177 DAVPLAAGAFLCATAQSVQT-MIIGRVLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPL 253 (300)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~-l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~ 253 (300)
+.++++++.++++++.+... +++.|+++|++.|...+...+++.|.+|+++ |+.++++++++.++|.+++|.+++++
T Consensus 87 g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l 166 (489)
T PRK10207 87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876444 4578999999999999999999999998874 57899999999999999999999999
Q ss_pred cCCCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246 254 AGNPLWWRTMFGLAAIPSILLALGMGLS 281 (300)
Q Consensus 254 ~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 281 (300)
.+. .|||+.|++.++..++..+.+++.
T Consensus 167 ~~~-~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 167 ADK-FGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHh-hChHHHHHHHHHHHHHHHHHHHHc
Confidence 877 799999999765444444443333
No 53
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.83 E-value=1.6e-19 Score=160.05 Aligned_cols=163 Identities=26% Similarity=0.378 Sum_probs=147.0
Q ss_pred HHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHH
Q 022246 120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII 199 (300)
Q Consensus 120 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (300)
..++.+..|.+.+++|++..+. +++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.+.++++.+++
T Consensus 7 ~~~~~p~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (377)
T PRK11102 7 IDMYLPALPVIAADFGVSAGSV--QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY 84 (377)
T ss_pred HHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 4456678899999999999888 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH-Hh
Q 022246 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-GM 278 (300)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~ 278 (300)
.|++.|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+.+. .+||+.|++.+++.++..+ ..
T Consensus 85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-FSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988765 7899999998887766544 44
Q ss_pred hcCCCCh
Q 022246 279 GLSPESP 285 (300)
Q Consensus 279 ~~~pe~~ 285 (300)
+++||++
T Consensus 164 ~~~~~~~ 170 (377)
T PRK11102 164 FFIPETL 170 (377)
T ss_pred HhCCccC
Confidence 5667754
No 54
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.83 E-value=3.2e-19 Score=159.09 Aligned_cols=167 Identities=19% Similarity=0.082 Sum_probs=138.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh
Q 022246 112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA 191 (300)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~ 191 (300)
+.++..+....+....+.+.+++|.+.... +++.+.+.+++.++.+++|+++||+|||++++.+.++.+++.+++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~ 88 (393)
T PRK11195 11 AQFFSALADNALLFAAIALLKELHYPDWSQ--PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG 88 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH
Confidence 344444333333445556678999888777 999999999999999999999999999999999999998888877776
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHH
Q 022246 192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271 (300)
Q Consensus 192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 271 (300)
.+. ++.|+++|++.+...|...+++.|++|+++|++++++......+|.++||.+++.+.+. .|+..+++.+...
T Consensus 89 ~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~~~ 163 (393)
T PRK11195 89 IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCALIY 163 (393)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 664 67899999999999999999999999999999999999999999999999999999764 3777777766655
Q ss_pred HHHHHHhhcCCCCh
Q 022246 272 ILLALGMGLSPESP 285 (300)
Q Consensus 272 ~~~~~~~~~~pe~~ 285 (300)
++..+..+++||.+
T Consensus 164 ~~~~~~~~~l~~~~ 177 (393)
T PRK11195 164 LLAALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHhcCCCCc
Confidence 55555566677754
No 55
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.83 E-value=7.2e-19 Score=157.28 Aligned_cols=177 Identities=11% Similarity=0.011 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 104 PFVGVACLGAILFGYHLGVVNGALEYLAK-DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
+.+.+..+..+.........++..+.+.+ ++|++.++. +++.+++.+++.++.++.|++.||+|.|+++.++.++++
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~--g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL--FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 34555555555666666677887887766 899999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-----hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc---
Q 022246 183 AGAFLCATA-----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA--- 254 (300)
Q Consensus 183 ~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--- 254 (300)
+.+++.+++ ++++.+++.|++.|++ ++.++.....++++||+++||+++|++....++|..++++++..+.
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~ 190 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP 190 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999887 8999999999999998 7788999999999999999999999997666666655544443321
Q ss_pred --C------------CCCchHHHHHHhHHHHHHHHHHh-hcCCC
Q 022246 255 --G------------NPLWWRTMFGLAAIPSILLALGM-GLSPE 283 (300)
Q Consensus 255 --~------------~~~~w~~~f~~~~~~~~~~~~~~-~~~pe 283 (300)
. ...+||..+++..++.++..++. +++++
T Consensus 191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 12458888888888776665544 44444
No 56
>PRK10054 putative transporter; Provisional
Probab=99.82 E-value=5.9e-19 Score=157.51 Aligned_cols=163 Identities=20% Similarity=0.180 Sum_probs=139.7
Q ss_pred HHHHhhhh-hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHH
Q 022246 118 YHLGVVNG-ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT 196 (300)
Q Consensus 118 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (300)
.......+ ..+++.+++|++..+. +++.+++.+++.+++++.|+++||+|||++++.+.++.+++.++.++.++++.
T Consensus 21 ~g~~~~~~~l~~~l~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (395)
T PRK10054 21 IGRGATLPFMTIYLSRQYSLSVDLI--GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTL 98 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33334444 4567888999999998 99999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
+++++++.|.+.+...+....+..|.+|+++|++++++......+|.+++|.+++.+.. .+|++.|++.+++.++..+
T Consensus 99 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--~g~~~~f~~~~~~~~i~~i 176 (395)
T PRK10054 99 VVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--QSINLPFWLAAICSAFPLV 176 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcHHHHHHHHHHHHHH
Confidence 98889888888777788889999999999999999999999999999999999998864 6899999998887766654
Q ss_pred H-hhcCCCC
Q 022246 277 G-MGLSPES 284 (300)
Q Consensus 277 ~-~~~~pe~ 284 (300)
. .+++||+
T Consensus 177 ~~~~~~~~~ 185 (395)
T PRK10054 177 FIQIWVQRS 185 (395)
T ss_pred HHHHHHhcc
Confidence 3 3445554
No 57
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.82 E-value=5.1e-20 Score=172.60 Aligned_cols=176 Identities=14% Similarity=0.148 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (300)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~ 186 (300)
+..++..+...+..+..+..++.++++|+++..+. |++.+.+.++++++.++.+++.||+|||+++.++.++++++.+
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~--G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l 113 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS--GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF 113 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc--eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence 34444566666667788889999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHhh---------------------------------------------------hHHHHHHHHHHHHHhhhhhhhhh
Q 022246 187 LCATAQ---------------------------------------------------SVQTMIIGRVLAGIGIGISSAIV 215 (300)
Q Consensus 187 ~~~~~~---------------------------------------------------~~~~l~~~~~l~G~~~~~~~~~~ 215 (300)
++++.+ .+..++++|+++|+|.+..++..
T Consensus 114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~ 193 (633)
T TIGR00805 114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG 193 (633)
T ss_pred HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence 887653 24567789999999999999999
Q ss_pred hhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC---------------------chHHHHHHhHHHHHHH
Q 022246 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL---------------------WWRTMFGLAAIPSILL 274 (300)
Q Consensus 216 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------------------~w~~~f~~~~~~~~~~ 274 (300)
.+++.|++|+++|+.+++++..+..+|.++|+++++.+.+... .|+..|++.+++.++.
T Consensus 194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~ 273 (633)
T TIGR00805 194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT 273 (633)
T ss_pred chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764211 2777788888888776
Q ss_pred HHHhhcCCCC
Q 022246 275 ALGMGLSPES 284 (300)
Q Consensus 275 ~~~~~~~pe~ 284 (300)
++.++++|++
T Consensus 274 ~v~l~~~p~~ 283 (633)
T TIGR00805 274 SIPFFFFPKA 283 (633)
T ss_pred HHHHHhCccc
Confidence 6666666654
No 58
>PRK10133 L-fucose transporter; Provisional
Probab=99.82 E-value=1.7e-18 Score=156.42 Aligned_cols=147 Identities=18% Similarity=0.222 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHH
Q 022246 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (300)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~ 184 (300)
.+...++..+...+.........|.+++++|++..+. ++..+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~--gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~ 104 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3444445556666667788889999999999999888 99999999999999999999999999999999999999999
Q ss_pred HHHH---HHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246 185 AFLC---ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (300)
Q Consensus 185 ~~~~---~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 253 (300)
.+++ +.+++++.++++|+++|++.+...+....++.|..+.++|+..+++.+....+|..+++++++.+
T Consensus 105 ~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9875 46789999999999999999999999999999987777777789999999999999999887654
No 59
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.9e-18 Score=154.10 Aligned_cols=198 Identities=37% Similarity=0.655 Sum_probs=158.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--------HHhC--CChhh--hHHHHHHHHHHHHHHHHHhhhhhhccc
Q 022246 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLA--------KDLG--IAENT--VLQGWIVSSLLAGATVGSFTGGSLADK 167 (300)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~s~~~--~~~~~~~~~~~i~~~i~~~~~g~lsd~ 167 (300)
++...+.....++.+-++|....++.....+. +.+| .++++ ...+.+.+++.+|.++|.++.++++||
T Consensus 7 ~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~ 86 (485)
T KOG0569|consen 7 RRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADR 86 (485)
T ss_pred HHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555566777787777766544433 3445 33332 245778899999999999999999999
Q ss_pred cCchHHHHHHhHHHHHHHHHHHH---hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHH
Q 022246 168 FGRTRTFQLDAVPLAAGAFLCAT---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGIL 244 (300)
Q Consensus 168 ~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 244 (300)
+|||..+.++.++..++.++..+ .+++.++++.|++.|+..|......+.++.|..|.+.||....+...+..+|.+
T Consensus 87 ~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~l 166 (485)
T KOG0569|consen 87 FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGIL 166 (485)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHH
Confidence 99999999888887777665554 478899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhh-ccCCCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHh-hcCcccc
Q 022246 245 AALVAGLP-LAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ-VFLHDYI 297 (300)
Q Consensus 245 ~~~~~~~~-~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~-~~~~~~~ 297 (300)
++..++.. +..+...|.+.+.+..+++++..+...++||+|+++.. +++.+++
T Consensus 167 l~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A 221 (485)
T KOG0569|consen 167 LGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEA 221 (485)
T ss_pred HHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHH
Confidence 98666543 44444679999999999999999999999999999987 5665554
No 60
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.81 E-value=7.7e-20 Score=164.84 Aligned_cols=187 Identities=18% Similarity=0.209 Sum_probs=156.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH
Q 022246 98 SSGVVLPFVGVACLGAILFGYHLGVVNG-ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL 176 (300)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~ 176 (300)
.+|..+.++..+++.++..+.+...++. .+..+.+|.++..++. +++.+++.++++++.++++.|.||++-.+.+..
T Consensus 39 ~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l--~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~ 116 (495)
T KOG2533|consen 39 LRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL--GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSV 116 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh--hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHH
Confidence 3344455555555666666655554433 2233558888888888 999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC-
Q 022246 177 DAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG- 255 (300)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~- 255 (300)
..+++++..++.+...|++.+++.|+++|+.+++.+|....+++.+|.+++|++.+++++....+|+++|.+++..+..
T Consensus 117 ~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~ 196 (495)
T KOG2533|consen 117 SGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKL 196 (495)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhh
Confidence 9999999998888899999999999999999999999999999999999999999999999999999999999988532
Q ss_pred ----CCCchHHHHHHhHHHHHHHHHH-hhcCCCChh
Q 022246 256 ----NPLWWRTMFGLAAIPSILLALG-MGLSPESPR 286 (300)
Q Consensus 256 ----~~~~w~~~f~~~~~~~~~~~~~-~~~~pe~~~ 286 (300)
...||||.|++.+++.++..++ ++++|+.|.
T Consensus 197 ~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 197 NGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred cCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 2378999999999999887765 455788775
No 61
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.81 E-value=1e-18 Score=156.51 Aligned_cols=175 Identities=16% Similarity=0.191 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (300)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~ 186 (300)
.+++...+..++......+..|.+++++|++..+. +++.+.+.+++.++.++.|++.||+|||++++.+.++++++.+
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~--g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA--ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 34455666667777788889999999999999988 9999999999999999999999999999999999999999988
Q ss_pred HHHH---hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC-------
Q 022246 187 LCAT---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN------- 256 (300)
Q Consensus 187 ~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~------- 256 (300)
++.. .++++.+++.|++.|++.+...+....++.+..|+++|++.+++.+....+|..++|.+++.+...
T Consensus 84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~ 163 (410)
T TIGR00885 84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ 163 (410)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 7644 358999999999999999999999999999999999999999999999999999999998876422
Q ss_pred ------------------CCchHHHHHHhHHHHHHHHHHhhc--CCC
Q 022246 257 ------------------PLWWRTMFGLAAIPSILLALGMGL--SPE 283 (300)
Q Consensus 257 ------------------~~~w~~~f~~~~~~~~~~~~~~~~--~pe 283 (300)
..+||+.|++.+++.++..++..+ .|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~ 210 (410)
T TIGR00885 164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPA 210 (410)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 125999999888877665544433 454
No 62
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.81 E-value=1.4e-18 Score=155.44 Aligned_cols=173 Identities=24% Similarity=0.192 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhh---HHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTV---LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (300)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~ 186 (300)
++..++..+......+.+|.+.+++|++..+. ..+++.+++.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 99 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV 99 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence 44455555666677788898889999886542 237888999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHH
Q 022246 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL 266 (300)
Q Consensus 187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~ 266 (300)
++++.++++.+++.|++.|++.+ ..+....++.|.+|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~ 177 (408)
T PRK09874 100 LMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS-YGLRPVFFI 177 (408)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHH
Confidence 88899999999999999999754 5677788899999999999999999999999999999999988765 789999999
Q ss_pred hHHHHHHHHHH-hhcCCCC
Q 022246 267 AAIPSILLALG-MGLSPES 284 (300)
Q Consensus 267 ~~~~~~~~~~~-~~~~pe~ 284 (300)
.+++.++..+. .+++||+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 178 TASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 98877665543 4445654
No 63
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.81 E-value=2.1e-18 Score=153.21 Aligned_cols=149 Identities=19% Similarity=0.250 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH
Q 022246 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (300)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~ 185 (300)
+...++..++.........+..|.+.+++|.+..+. |++.+.+.++..++++++|+++||+|||+++..+.++.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV--GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666777788889999999999998888 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN 256 (300)
Q Consensus 186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 256 (300)
++++++++++.++++|++.|++.+...+.....+.+..++++|+++++++..+..+|..++|.+++.+.+.
T Consensus 86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999998888888888999999999999999999999999999999988654
No 64
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.81 E-value=1.1e-18 Score=159.31 Aligned_cols=169 Identities=26% Similarity=0.382 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
+..+..+++.....++........++++..|+|-++.. .|+.+...++.+++.++.|+|+|.||||++++.+.++..
T Consensus 43 i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~---~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~v 119 (599)
T PF06609_consen 43 IASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNW---SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGV 119 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 33333444444444455555566788999999987655 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (300)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~ 262 (300)
++.++++.++|...+++...+.|+|.|... .....++|..|.+.|+.+.++......+...+++.++..+..+ .+|||
T Consensus 120 vG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~-~~WRw 197 (599)
T PF06609_consen 120 VGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH-SGWRW 197 (599)
T ss_pred hHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC-CCcch
Confidence 999999999999999999999999977665 4566689999999998888877766666666788888776554 78999
Q ss_pred HHHHhHHHHHHHHH
Q 022246 263 MFGLAAIPSILLAL 276 (300)
Q Consensus 263 ~f~~~~~~~~~~~~ 276 (300)
.|++..++..+.++
T Consensus 198 ~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 198 IFYIFIIWSGIALV 211 (599)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988766544
No 65
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.81 E-value=2.8e-18 Score=153.43 Aligned_cols=156 Identities=20% Similarity=0.153 Sum_probs=139.0
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 203 (300)
....+++++++|.+..+. |++.+.+.++..+..+++|+++||+|||++++.+.++.+++.+++.+.++++.+++.|++
T Consensus 31 ~~~~~~~~~~~g~s~~~~--gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 108 (400)
T PRK11646 31 PLISIRFVDQLGWAAVMV--GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCIL 108 (400)
T ss_pred HHHHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 335557889999999888 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH-HhhcCC
Q 022246 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-GMGLSP 282 (300)
Q Consensus 204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~p 282 (300)
.|++.+...+...+++.|.+|+++|++++++......+|..+||.+++.+. . .+||+.|++.++..++..+ ..+++|
T Consensus 109 ~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~-~g~~~~f~~~~~~~~~~~i~~~~~~~ 186 (400)
T PRK11646 109 SGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q-YDFRLVCATGAVLFVLAAAFNAWLLP 186 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999998888888999999999999999999999999999999999999987 4 7899999998877665543 344556
Q ss_pred C
Q 022246 283 E 283 (300)
Q Consensus 283 e 283 (300)
|
T Consensus 187 ~ 187 (400)
T PRK11646 187 A 187 (400)
T ss_pred c
Confidence 5
No 66
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.80 E-value=9.5e-19 Score=152.72 Aligned_cols=168 Identities=35% Similarity=0.494 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH
Q 022246 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (300)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~ 189 (300)
++..+...+.........+.+.+++|.+..+. ++..+...++..++.+++|+++||+|||+.+..+.++..++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 44555666666777888899999999998888 9999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHH
Q 022246 190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI 269 (300)
Q Consensus 190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~ 269 (300)
+.++++.+++.|++.|++.+...+....++.|++|+++|++.+++......+|..++|.+++.+.+. .+||+.|++.++
T Consensus 83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~ 161 (352)
T cd06174 83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILAI 161 (352)
T ss_pred HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876 679999999888
Q ss_pred HHHHHHHHhhc
Q 022246 270 PSILLALGMGL 280 (300)
Q Consensus 270 ~~~~~~~~~~~ 280 (300)
+.++..+..++
T Consensus 162 ~~~~~~~~~~~ 172 (352)
T cd06174 162 LGLLLALLLLF 172 (352)
T ss_pred HHHHHHHHHHH
Confidence 77666554443
No 67
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.80 E-value=2.1e-18 Score=157.27 Aligned_cols=165 Identities=18% Similarity=0.192 Sum_probs=138.6
Q ss_pred HHHHHHHHHhhhh-hHHHHHHH--hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc-cCchHHHHHHhHHHHHHHHHH
Q 022246 113 AILFGYHLGVVNG-ALEYLAKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLC 188 (300)
Q Consensus 113 ~~~~~~~~~~~~~-~~~~~~~~--~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~~~~~~~~~~~~~ 188 (300)
.+...+.+....+ ...++.++ +|++..+. +++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.
T Consensus 19 ~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a--g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~ 96 (475)
T TIGR00924 19 ELWERFSYYGMQGILAVYLVQQAGLGFSQEQA--FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 3333333333344 44455666 89998888 999999999999999999999999 899999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCccc---chhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 022246 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI---RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (300)
Q Consensus 189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~ 265 (300)
+++++++.+++.+++.|++.|...+...++++|++|+++ |+.++++++.+.++|.+++|++++.+.+. .+|++.|+
T Consensus 97 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~-~g~~~~f~ 175 (475)
T TIGR00924 97 AMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN-YGYHVGFN 175 (475)
T ss_pred HhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh-cChHHHHH
Confidence 998888888899999999999999999999999998764 88899999999999999999999998865 78999999
Q ss_pred HhHHHHHHHHHHhhc
Q 022246 266 LAAIPSILLALGMGL 280 (300)
Q Consensus 266 ~~~~~~~~~~~~~~~ 280 (300)
+.++..++..+.+++
T Consensus 176 ~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 176 LAAVGMVIGLLTFFA 190 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988665555444433
No 68
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.80 E-value=1.9e-18 Score=152.84 Aligned_cols=171 Identities=18% Similarity=0.112 Sum_probs=138.2
Q ss_pred HHHHHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH-HHhHHHHHHHHHHHH
Q 022246 113 AILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCAT 190 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~-~~~~~~~~~~~~~~~ 190 (300)
.++..+......+.++ ++.+++|.+..+. +++.+++.++..+.+++.|+++||+|||+.++ .+.++.+++.+++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMI--GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 4455555556666666 5778999998888 99999999999999999999999999988765 456666677788888
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhh--HHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246 191 AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGAL--GSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (300)
Q Consensus 191 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~ 268 (300)
+++++.+++.|++.|.+.+...+....+..|..|++.|+.+ .++...+..+|.+++|.+++.+.+. .+||+.|++.+
T Consensus 84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~f~~~~ 162 (375)
T TIGR00899 84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-FGFTVMFLTAA 162 (375)
T ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-cccHHHHHHHH
Confidence 99999999999999888777888888888898887777654 5777888889999999999988766 78999999998
Q ss_pred HHHHHHHHH-hhcCCCChh
Q 022246 269 IPSILLALG-MGLSPESPR 286 (300)
Q Consensus 269 ~~~~~~~~~-~~~~pe~~~ 286 (300)
++.++..+. ++++||.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 163 LAFVLCGVLVWLFLPSYPR 181 (375)
T ss_pred HHHHHHHHHHHHhCCCccc
Confidence 877666554 455787654
No 69
>PTZ00207 hypothetical protein; Provisional
Probab=99.80 E-value=5.4e-18 Score=155.70 Aligned_cols=172 Identities=12% Similarity=0.089 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHH
Q 022246 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (300)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~ 181 (300)
+|..+..........+.. ..++...+.+++++|++..+. +++.++. ....+++++.|+++||+|||++++++.+++
T Consensus 26 Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgls~~~l--~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~ 101 (591)
T PTZ00207 26 RFALLVLGAFCSICTSFM-YAFNLISGAMQARYNLTQRDL--STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF 101 (591)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 344444444444443332 234557788999999999888 7777763 344567778999999999999999999999
Q ss_pred HHHHHHHHHh------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHH-HHHhhhhcc
Q 022246 182 AAGAFLCATA------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILA-ALVAGLPLA 254 (300)
Q Consensus 182 ~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~ 254 (300)
+++.++++++ ++++.+.+.|++.|++.+..++....++.++|| ++||++.|+..++..+|+++ +++..+++.
T Consensus 102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 689999999999999999998999999999997 77999999999999999964 666665553
Q ss_pred CCCCchHHHHHHhHHHHHHHHH-HhhcC
Q 022246 255 GNPLWWRTMFGLAAIPSILLAL-GMGLS 281 (300)
Q Consensus 255 ~~~~~w~~~f~~~~~~~~~~~~-~~~~~ 281 (300)
.+|++.|++.+++.++..+ .++++
T Consensus 181 ---~~~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 181 ---DNTSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred ---HhHHHHHHHHHHHHHHHHHHHHhhe
Confidence 4588888888888866554 34444
No 70
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.79 E-value=1.5e-21 Score=177.14 Aligned_cols=189 Identities=37% Similarity=0.611 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHH--HHhCCChh-------hhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHH
Q 022246 111 LGAILFGYHLGVVNGALEYLA--KDLGIAEN-------TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (300)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~-------~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~ 181 (300)
++.+..+++...++...+... ..++.+.. +...++..+...+|..+|.+++|+++||+|||++++++.++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~ 86 (451)
T PF00083_consen 7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM 86 (451)
T ss_pred HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 444677777777666555444 22222221 122378899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh---hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC--
Q 022246 182 AAGAFLCATAQ---SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-- 256 (300)
Q Consensus 182 ~~~~~~~~~~~---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-- 256 (300)
.++.++.++++ +++.++++|++.|++.|+..+....++.|..|+++|+...++...+..+|.+++.+++..+...
T Consensus 87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 166 (451)
T PF00083_consen 87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD 166 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999 9999999999999999999999999999999999999999999999999998888887665332
Q ss_pred CCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcCcccccC
Q 022246 257 PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDYISH 299 (300)
Q Consensus 257 ~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~ 299 (300)
..+||+.+++.++++++..+..+++||+|+|+..++|.++.++
T Consensus 167 ~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~ 209 (451)
T PF00083_consen 167 NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEK 209 (451)
T ss_pred cccccccccccccccccccccccccccccceeccccccccccc
Confidence 1359999999999988888888889999999998887776543
No 71
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.78 E-value=1.1e-18 Score=156.86 Aligned_cols=168 Identities=18% Similarity=0.158 Sum_probs=142.1
Q ss_pred HHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH----
Q 022246 115 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT---- 190 (300)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~---- 190 (300)
...+.........|.+.++++.+..+. +++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~ 105 (417)
T PRK10489 28 ISIFGLGLLGVAVPVQIQMMTGSTLQV--GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence 334444566668888888898888777 99999999999999999999999999999999888877776655442
Q ss_pred -hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHH
Q 022246 191 -AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI 269 (300)
Q Consensus 191 -~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~ 269 (300)
.++++.+++.|++.|++.+...+....++.|++|+++|+++.++......+|..+||.+++.+.+. .+|+|.|++.++
T Consensus 106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~-~~~~~~~~~~~~ 184 (417)
T PRK10489 106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA-GGVAWNYGLAAA 184 (417)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 467888899999999998888888899999999999999999999999999999999999988765 789999999888
Q ss_pred HHHHHHHHhhcCCCCh
Q 022246 270 PSILLALGMGLSPESP 285 (300)
Q Consensus 270 ~~~~~~~~~~~~pe~~ 285 (300)
..++..+..+.+|+++
T Consensus 185 ~~~~~~~~~~~l~~~~ 200 (417)
T PRK10489 185 GTFITLLPLLRLPALP 200 (417)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 7777666666777654
No 72
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.78 E-value=2.1e-18 Score=155.09 Aligned_cols=152 Identities=23% Similarity=0.342 Sum_probs=136.7
Q ss_pred HHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhh
Q 022246 132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIG 209 (300)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~ 209 (300)
.+++.+.++. +++.+.+..|+.+++++.|+++||+|-|+++..+.++.++++++..++. +++.++++|+++|++.|
T Consensus 66 ~~~~ws~~~k--~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 66 GEYDWSSTEK--GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQG 143 (466)
T ss_pred ceecCCHHHH--HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHh
Confidence 3567777777 9999999999999999999999999999999999999999999888765 44577999999999999
Q ss_pred hhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc-CCCCh
Q 022246 210 ISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-SPESP 285 (300)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~-~pe~~ 285 (300)
..++....+.+.|.|++||++..++...+..+|.+++..++|.+.+...||++.|++.++.+++..+++++ ..|+|
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P 220 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSP 220 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999877689999999999999887776554 44444
No 73
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.78 E-value=4.4e-18 Score=143.40 Aligned_cols=192 Identities=20% Similarity=0.228 Sum_probs=168.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhH
Q 022246 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (300)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~ 179 (300)
+..|...+.+.+......+.....+...|.+.+..|.+..+. .++......|..++...||.++|++|||+.+.+...
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~--~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l 151 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA--PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL 151 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh--hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence 444566667777777777666677778888999999888877 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 022246 180 PLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (300)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 259 (300)
..++..++.+.++|+..+.++|.+.|+|.|+ +|...++-.|..|..+|+..+-.. ..+.+|.++...+++..... .|
T Consensus 152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~-~g 228 (528)
T KOG0253|consen 152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN-FG 228 (528)
T ss_pred HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-hh
Confidence 9999999999999999999999999999999 899999999999999998877766 88899999999999888776 89
Q ss_pred hHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcCccc
Q 022246 260 WRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDY 296 (300)
Q Consensus 260 w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~ 296 (300)
|||..........+.+.+.+++||+|++...+++.++
T Consensus 229 wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k 265 (528)
T KOG0253|consen 229 WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYK 265 (528)
T ss_pred HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHH
Confidence 9999999888878788888899999999887766543
No 74
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.78 E-value=1.2e-17 Score=153.28 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=125.8
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH---HHHhhhHHHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQTMIIG 200 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 200 (300)
.+.++++.+++|++.... ++......++..++.+++|+++||+|||+++..+.++..+..+. ...+.+...+++.
T Consensus 271 ~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (490)
T PRK10642 271 TYMPSYLSHNLHYSEDHG--VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG 348 (490)
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 345556667889987766 67778888899999999999999999999988877654433322 2233456777788
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
+++.|++.+...+....++.|.+|++.|++++++.+....+++.++|.+.+.+.+...+|+..+++..+.+++.++..++
T Consensus 349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777888899999999999999985444556667788888877654345787777777777777777777
Q ss_pred CCCChhHHHhh
Q 022246 281 SPESPRWLFQV 291 (300)
Q Consensus 281 ~pe~~~~~~~~ 291 (300)
+||+|+++.++
T Consensus 429 ~pes~~~~~~~ 439 (490)
T PRK10642 429 MKETANRPLKG 439 (490)
T ss_pred hccccCCCCCC
Confidence 89999886643
No 75
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.78 E-value=1.2e-17 Score=148.24 Aligned_cols=173 Identities=20% Similarity=0.280 Sum_probs=135.3
Q ss_pred HHHHHHHhhhhhHHHHHHHhCC--ChhhhHHHHHHH--HH---HHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246 115 LFGYHLGVVNGALEYLAKDLGI--AENTVLQGWIVS--SL---LAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (300)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~--~~---~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~ 187 (300)
.++++...+++..+++.+++.. ++++. +...+ .+ .++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 81 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLV--ALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCChHH--HHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777654 23333 33333 22 2333468899999999999999999999999999999
Q ss_pred HHHhhhHH--------HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC----
Q 022246 188 CATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---- 255 (300)
Q Consensus 188 ~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---- 255 (300)
+++++++. .+++.|+++|++.+...+....++.|++++++|++..++...+..+|.+++++++..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~ 161 (394)
T TIGR00883 82 IGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD 161 (394)
T ss_pred HhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99988865 478899999999999999999999999999999999999999999999999887765432
Q ss_pred ---CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHH
Q 022246 256 ---NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLF 289 (300)
Q Consensus 256 ---~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~ 289 (300)
...+||+.|++.+++.++..++....||++++..
T Consensus 162 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (394)
T TIGR00883 162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEK 198 (394)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 2368999999888777666666566788765443
No 76
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.77 E-value=2e-17 Score=148.07 Aligned_cols=144 Identities=10% Similarity=0.047 Sum_probs=121.0
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH---H-hhhHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---T-AQSVQTMIIGR 201 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~~ 201 (300)
.++.+.+++|.+..+. ++..+.+.+++.++.+++|+++||+|||+++..+.++++++.+++. . .++++.+++.|
T Consensus 35 ~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (402)
T TIGR00897 35 WLSPFLKALGLSPQQS--ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFY 112 (402)
T ss_pred hHHHHHHHhCCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH
Confidence 4455558899999888 9999999999999999999999999999999999999888876543 3 25788888999
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHH-HHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI-LAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 272 (300)
++.|++.+...+.....+.+.+|+++|++++|+..++..+|. .++|.+++.+.+. .||+..+|......+
T Consensus 113 ~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~-~g~~~~~~~~~~~~~ 183 (402)
T TIGR00897 113 GIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA-FGEMNTLWSALAFVL 183 (402)
T ss_pred HHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHHH
Confidence 999999888777788889999999999999999999999996 6889998887765 677666665544433
No 77
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.76 E-value=3.4e-17 Score=150.23 Aligned_cols=149 Identities=24% Similarity=0.257 Sum_probs=123.9
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc-cCchHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGR 201 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 201 (300)
.....++.+++|++..+. ++..+.+........+++|+++|| +|||++++.+.++.+++.++++++. +...+++.+
T Consensus 42 ~~l~~yl~~~lg~s~~~a--~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~ 119 (500)
T PRK09584 42 GIMAVYLVKQLGMSEADS--ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGM 119 (500)
T ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 346667889999998887 677777766555666789999999 5999999999999999988888874 456677788
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCccc--chhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~ 275 (300)
+++|++.|...+....++.|++|+++ |..++++++++.++|.+++|++++++.+. .|||+.|++.++..++..
T Consensus 120 ~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~-~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 120 ATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK-YGWSVAFALSVVGMLITV 194 (500)
T ss_pred HHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHH
Confidence 99999999888888899999998653 45688899999999999999999999876 799999999876555443
No 78
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.75 E-value=8e-18 Score=142.49 Aligned_cols=143 Identities=20% Similarity=0.178 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 022246 142 LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE 221 (300)
Q Consensus 142 ~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 221 (300)
..|.+.+.+.+++.+..+.+|.++||+|||+++.+|++..++...+.+++.|+..+++.|++.|+..|- ..+..++++|
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rAiisd 147 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRAIISD 147 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHHHHHh
Confidence 448999999999999999999999999999999999999999999999999997777779999999764 5788999999
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC---CCCch--HHHHHHhHHHHHH-HHHHhhcCCCCh
Q 022246 222 ISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---NPLWW--RTMFGLAAIPSIL-LALGMGLSPESP 285 (300)
Q Consensus 222 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~w--~~~f~~~~~~~~~-~~~~~~~~pe~~ 285 (300)
.+++++|+.+++.+.....+|.++||.+|+++.+ ....+ -..-++..++.+. ..++.+++|||-
T Consensus 148 V~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 148 VVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred hcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999999999876 11111 1222333333333 334557789984
No 79
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.7e-18 Score=147.76 Aligned_cols=188 Identities=24% Similarity=0.300 Sum_probs=152.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh-C-------CChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc
Q 022246 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-G-------IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170 (300)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr 170 (300)
.++....+.+..++.+.+.|+...++...+.+...+ | ++.... +.+..+.++|.++|++++|++.|++||
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~--~~Vn~~A~vGti~GQl~FG~lgD~~GR 113 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVL--ALVNAAALVGTIFGQLFFGWLGDKFGR 113 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHH--HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345567788889999999999999999998887765 2 222333 788899999999999999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHH
Q 022246 171 TRTFQLDAVPLAAGAFLCATAQ-------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI 243 (300)
Q Consensus 171 r~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 243 (300)
|+++...++++.+++++++++. -.+++.+.|+++|+|.|+-||...++.+|....+.||...+.+......|.
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 9999999999999999777642 256788999999999999999999999999999999988888666666655
Q ss_pred HHHHHhhhhc----cCCC----------CchHHHHHHhHHHHHHHHHHhhcCCCChhHH
Q 022246 244 LAALVAGLPL----AGNP----------LWWRTMFGLAAIPSILLALGMGLSPESPRWL 288 (300)
Q Consensus 244 ~~~~~~~~~~----~~~~----------~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~ 288 (300)
..|.+++-.+ .... .=||..|.+.++.+++.+...+.+|||++..
T Consensus 194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT 252 (538)
T ss_pred hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence 5555444333 2110 1299999999888888888888899999876
No 80
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.75 E-value=2.3e-17 Score=145.18 Aligned_cols=150 Identities=23% Similarity=0.353 Sum_probs=130.8
Q ss_pred HhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHH
Q 022246 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIG 200 (300)
Q Consensus 121 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (300)
....+.+|.+.+++|++..+. +++.+++.+++.++.++.|+++||+|||+++..+.++.+++.+.+ ..++.+.+++.
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 93 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVA--GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG 93 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence 456778999999999999988 999999999999999999999999999999999998888887777 77889999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC-CchHHHHHHhHHHHHHH
Q 022246 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-LWWRTMFGLAAIPSILL 274 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~w~~~f~~~~~~~~~~ 274 (300)
|++.|++.+...+....++.|.++ ++|++++++++.+..+|..+++.+++.+.+.. .+||+.|.+.+++.++.
T Consensus 94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 999999999888888888899886 68999999999999999999999888876542 24999988776654443
No 81
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.74 E-value=1.5e-16 Score=150.29 Aligned_cols=140 Identities=15% Similarity=0.037 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCC
Q 022246 145 WIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISP 224 (300)
Q Consensus 145 ~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~ 224 (300)
+...+..++.+++.++.|+++||+|||+++++++++.++++++.++.++...+++++++.|++.++.++...++++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556668889999999999999999999999999999999999998888888888889999888889999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCChh
Q 022246 225 TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR 286 (300)
Q Consensus 225 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~ 286 (300)
+++|++++|+.++...+|.+++|++++.+... +...+|++.+++.++++++.+++|||.+
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~~ 738 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTRG 738 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999877653 3567888888877777777778899764
No 82
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.73 E-value=5.4e-16 Score=138.42 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=127.8
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 205 (300)
...++++++|++..+. +++.+...++..++.+++|+++||+|||+.+..+.+...+........++.+.+++.+++.+
T Consensus 239 ~p~~l~~~~~~~~~~~--g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 316 (393)
T PRK15011 239 MPLFIINELHLPEKLA--GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA 316 (393)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4456778899988777 77777777778888999999999999999888776666555555555677777888888888
Q ss_pred HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCC
Q 022246 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPES 284 (300)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~ 284 (300)
++.+...+....+..|.+|. +|+++.++++....+|..+++.+++.+.+. .+|+..|++.+++.++.++..+++||+
T Consensus 317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (393)
T PRK15011 317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI-WNYHAVFWFALVMIIATLFCLLRIKDV 393 (393)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 88777777777888999985 599999999998999999999999999876 789999999888888888777777653
No 83
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.73 E-value=2.3e-16 Score=142.72 Aligned_cols=151 Identities=23% Similarity=0.199 Sum_probs=122.0
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-CchHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGR 201 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 201 (300)
.....++.+++|++..+. +.+.+.+.+...++++++|+++||+ |||++++++.++.+++.++++... +...+++..
T Consensus 30 ~~L~~yL~~~lgls~~~a--~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l 107 (493)
T PRK15462 30 ALLILYLTNQLKYDDNHA--YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSL 107 (493)
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 345567788899999888 8889999999999999999999999 999999999999999887776543 223344444
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcc--cchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTE--IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 277 (300)
.+.+++.|...+...++++|.+|++ +|..++++++.+.++|+.++|++.+++.+. .||++.|++.++..++..+.
T Consensus 108 ~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 108 AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-YSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHH
Confidence 4555666666677788999999976 689999999999999999999999999766 78999999877654444443
No 84
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.73 E-value=2.5e-16 Score=144.25 Aligned_cols=169 Identities=21% Similarity=0.232 Sum_probs=136.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-----CchHH-HHHHhHHHHHHHH
Q 022246 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRT-FQLDAVPLAAGAF 186 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-----Grr~~-~~~~~~~~~~~~~ 186 (300)
.+..++........+|...++.|.+.++. +.. +.....+ ++++++|+++||+ |||+. ++.+.++.+++.+
T Consensus 21 ~~~~gl~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~ 96 (491)
T PRK11010 21 GFASGLPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIA 96 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHH
Confidence 33444445566778888888889998887 665 3333333 5889999999999 99885 5577777777777
Q ss_pred HHHHh---hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHH
Q 022246 187 LCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263 (300)
Q Consensus 187 ~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~ 263 (300)
++++. .+++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+...|||..
T Consensus 97 ~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~ 176 (491)
T PRK11010 97 AMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGM 176 (491)
T ss_pred HHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 77664 468888889999999999999999999999999999999999999999999999999998887633699999
Q ss_pred HHHhHHHHHHHHHHhhcCCCCh
Q 022246 264 FGLAAIPSILLALGMGLSPESP 285 (300)
Q Consensus 264 f~~~~~~~~~~~~~~~~~pe~~ 285 (300)
|++.+++.++..+..+++||++
T Consensus 177 f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 177 YWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc
Confidence 9999988777766666678764
No 85
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.73 E-value=5.6e-17 Score=139.65 Aligned_cols=177 Identities=19% Similarity=0.169 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHH
Q 022246 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (300)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~ 184 (300)
.+.+..+......+.....++..+.+.+++|+|++|. +++.++..+...+..++.|.+.||+|.|++.+++.++..+-
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~--~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP 92 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIP 92 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH--HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHH
Confidence 3333444444444455577788888999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhh---hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc--
Q 022246 185 AFLCATAQ---SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-- 259 (300)
Q Consensus 185 ~~~~~~~~---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-- 259 (300)
++..+++. +++.+++++++.|++ |+.+++...+++.+||++++|.++|++. ..++|..+..+++..+... .+
T Consensus 93 ~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~-~g~~ 169 (417)
T COG2223 93 CLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA-FGFL 169 (417)
T ss_pred HHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH-HhhH
Confidence 99888874 456999999999998 5668999999999999999999999999 7788887777777776655 55
Q ss_pred -hHHHHHHhHHHHHHHHH-HhhcCCCChh
Q 022246 260 -WRTMFGLAAIPSILLAL-GMGLSPESPR 286 (300)
Q Consensus 260 -w~~~f~~~~~~~~~~~~-~~~~~pe~~~ 286 (300)
|+...++..+..++..+ .++++.+.|.
T Consensus 170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p~ 198 (417)
T COG2223 170 AWRNVAGIYVVALAIAAVLAWLGMNDVPE 198 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 99999998888877655 4555555554
No 86
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.72 E-value=2.5e-16 Score=158.21 Aligned_cols=178 Identities=16% Similarity=0.085 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH---HhHHH
Q 022246 106 VGVACLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL---DAVPL 181 (300)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~---~~~~~ 181 (300)
+...++..+...+....+..... .+..+.+.+... ..++..+++.+.++++++++|+++||+|||+++.. ..+++
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~ 95 (1140)
T PRK06814 17 FWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNA-LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGI 95 (1140)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHH-HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHH
Confidence 33334444444443333333322 333333333222 23788889999999999999999999999997533 22233
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchH
Q 022246 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR 261 (300)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~ 261 (300)
++..+.....++++.++++|+++|++.+...+...+++.|++++++|++++|+..++..+|.++||++++++... .+|+
T Consensus 96 ~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-~~~~ 174 (1140)
T PRK06814 96 AALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS-GNFV 174 (1140)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-cccH
Confidence 333333334589999999999999999999999999999999999999999999999999999999999999876 8999
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCCh
Q 022246 262 TMFGLAAIPSILLALGMGLSPESP 285 (300)
Q Consensus 262 ~~f~~~~~~~~~~~~~~~~~pe~~ 285 (300)
+.|++.+++.++.+++.+++|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 175 ILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999666666666666666676653
No 87
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.72 E-value=3.6e-16 Score=157.22 Aligned_cols=163 Identities=20% Similarity=0.072 Sum_probs=128.9
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH---HHhhhHHHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATAQSVQTMIIG 200 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~ 200 (300)
....+.+..+++.+......+++.+++.++++++++++|+++||+|||++++++.++.+++.++. ....+++.++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV 109 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34556677777776666555899999999999999999999999999999998887665555443 345789999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC--------CCchHHHHHHhHHHH-
Q 022246 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN--------PLWWRTMFGLAAIPS- 271 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~w~~~f~~~~~~~- 271 (300)
|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++++++++... ..+|.+.+.+.++..
T Consensus 110 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1146)
T PRK08633 110 TFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVA 189 (1146)
T ss_pred HHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988653 234555554444433
Q ss_pred HHHHHHhhcCCCChh
Q 022246 272 ILLALGMGLSPESPR 286 (300)
Q Consensus 272 ~~~~~~~~~~pe~~~ 286 (300)
++.+++.+++||.++
T Consensus 190 ~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 190 VLGLIFAYRLPKVPA 204 (1146)
T ss_pred HHHHHHHhcCcCCCC
Confidence 333445556677653
No 88
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.72 E-value=3.3e-16 Score=140.21 Aligned_cols=156 Identities=19% Similarity=0.153 Sum_probs=131.2
Q ss_pred hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022246 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (300)
Q Consensus 125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 204 (300)
...|.+.++.|.+..+. ++..+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+++..++.
T Consensus 241 ~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (406)
T PRK11551 241 NWLPSLLVGQGLSRSQA--GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA 318 (406)
T ss_pred HHHHHHHHhCCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34566667789988887 8899999999999999999999999999999887777777777677777777777788888
Q ss_pred HHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCC
Q 022246 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP 282 (300)
Q Consensus 205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~p 282 (300)
|++.++..+....++.|.+|+++|+++.|+.+....+|..++|.+++.+.+...+|...+++.+.+.++.+++.+++.
T Consensus 319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 988888888899999999999999999999999999999999999999987656777788777777666665555443
No 89
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.71 E-value=6.6e-16 Score=138.25 Aligned_cols=172 Identities=24% Similarity=0.210 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-----CchH-HHHHHhHHHHH
Q 022246 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTR-TFQLDAVPLAA 183 (300)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-----Grr~-~~~~~~~~~~~ 183 (300)
+..++.+++..+.....+|.+.++.|++.++. |++..+... .+.++++|+++||+ |||+ +++.+.++.++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i--g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTI--GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 34455666667777778888888899999999 888766665 58899999999999 8775 67788888877
Q ss_pred HHHHHHHh---hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246 184 GAFLCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (300)
Q Consensus 184 ~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w 260 (300)
+..++++. .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+...||
T Consensus 81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw 160 (402)
T PRK11902 81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW 160 (402)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence 77777776 357777778788888888888999999999999999999999999999999999999888887643589
Q ss_pred HHHHHHhHHHHHHHHHHhhcCCCCh
Q 022246 261 RTMFGLAAIPSILLALGMGLSPESP 285 (300)
Q Consensus 261 ~~~f~~~~~~~~~~~~~~~~~pe~~ 285 (300)
|..|++.+++.++..+..+++||++
T Consensus 161 ~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 161 GNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999998888776666556677654
No 90
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.71 E-value=1.5e-15 Score=135.59 Aligned_cols=164 Identities=14% Similarity=0.104 Sum_probs=121.7
Q ss_pred HHHHhhhh-hHHHHHHHhCCChhhhHHHHHHHHH-HHHHHHHHhhhhhhccccCchHHH-HHHhHHHHHHHHHHHHhhhH
Q 022246 118 YHLGVVNG-ALEYLAKDLGIAENTVLQGWIVSSL-LAGATVGSFTGGSLADKFGRTRTF-QLDAVPLAAGAFLCATAQSV 194 (300)
Q Consensus 118 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~-~i~~~i~~~~~g~lsd~~Grr~~~-~~~~~~~~~~~~~~~~~~~~ 194 (300)
.......+ ..+++.+++|.+..+. |++.+.. .++..++++++++ +||+|||+.+ +.+.++.+++.++.++++++
T Consensus 29 ~~~~~~~p~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 105 (393)
T PRK15011 29 IAGALQTPTLSIFLTDEVHARPAMV--GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNY 105 (393)
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33334444 4446788999999888 8887655 4466666666666 9999999875 45566666777788888999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccc--hhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR--GALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (300)
Q Consensus 195 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 272 (300)
+.+++.+.+.|...+...+....++.|+.+++.| +...++...+..+|.+++|.+++.+.+. .|||+.|++.++..+
T Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~-~gw~~~f~~~~~~~~ 184 (393)
T PRK15011 106 FVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG-FSFTVMYLSAAVAFI 184 (393)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 9887666555555556677888888888776655 3445788888999999999999999765 799999999988776
Q ss_pred HHHHH-hhcCCCCh
Q 022246 273 LLALG-MGLSPESP 285 (300)
Q Consensus 273 ~~~~~-~~~~pe~~ 285 (300)
+..+. ++++||.+
T Consensus 185 ~~~~~~~~~~~~~~ 198 (393)
T PRK15011 185 VCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHhhcCccC
Confidence 66554 45567754
No 91
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.70 E-value=1.5e-16 Score=120.27 Aligned_cols=135 Identities=27% Similarity=0.342 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCccc
Q 022246 148 SSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI 227 (300)
Q Consensus 148 ~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 227 (300)
+.+.++..++.++.|++.||+|||+.+..+..+..++.++....++++.+++.+++.|++.+...+....++.|.+|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 44567788899999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh-cCCC
Q 022246 228 RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG-LSPE 283 (300)
Q Consensus 228 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~-~~pe 283 (300)
|+++.++......+|..+++.+++.+.+. .+|++.|++.+++.++..+..+ +.||
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQF-LGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhcc-cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999998765 7899999998887766655444 4455
No 92
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.69 E-value=6.7e-16 Score=138.81 Aligned_cols=145 Identities=15% Similarity=0.106 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh----hHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ----SVQTMIIGRVLAGIGIGISSAIVPLYI 219 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~ 219 (300)
+...++..++..++.++.|+++||+|||++++.+.++.++...+..... +++.+++.+++.|++.+...+....++
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i 333 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFV 333 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888889999999999999999999999999999888876666532 245667788999999988888889999
Q ss_pred hccCCcccchhhHHHHH-HHHHHHHHHHHHhhhhccCCC-----CchHHHHHHhHHHHHHHHH-HhhcCCCChhHH
Q 022246 220 SEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNP-----LWWRTMFGLAAIPSILLAL-GMGLSPESPRWL 288 (300)
Q Consensus 220 ~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~-----~~w~~~f~~~~~~~~~~~~-~~~~~pe~~~~~ 288 (300)
.|.+|+++|++++|+.+ ....+|.++||+++|.+.+.. .||++.|.+.+++.+++.+ .+++++|+++..
T Consensus 334 ~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 334 EKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred HHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 99999999999999997 667899999999999987642 4699999988888766554 556678775443
No 93
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.68 E-value=8e-16 Score=138.47 Aligned_cols=149 Identities=12% Similarity=0.049 Sum_probs=124.9
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhh
Q 022246 135 GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAI 214 (300)
Q Consensus 135 ~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 214 (300)
+.+.... +++.++..++..++.+++|+++||+|+|+.+..+.++.++..++.++.++.+.+++.+++.|++.+...+.
T Consensus 258 ~~~~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 258 EQGTRVF--GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred CcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4554455 88889899999999999999999999999999999999998888888889999999999999988887788
Q ss_pred hhhhhhccCCcccchhhHHH-HHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH-HhhcCCCChh
Q 022246 215 VPLYISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-GMGLSPESPR 286 (300)
Q Consensus 215 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~pe~~~ 286 (300)
...++.|.+|++.|++..+. ++....+|.++++.+.|.+.+. .||+..|++.+++.++..+ ..+++++.++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 408 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-IGFQGTYLILGGIVLLFTLISVFTLSGDRE 408 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 88899999999999887665 6777889999999999999876 7899999998887766554 3444555443
No 94
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.68 E-value=1.8e-15 Score=134.48 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhH-HHHHHH-HH
Q 022246 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV-PLAAGA-FL 187 (300)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~-~~~~~~-~~ 187 (300)
.+..+..++..++..+++|.+.+++|.+..+. +++.+++.++..++++++|+++||+||++....... ...+.. ..
T Consensus 10 ~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i--g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~ 87 (382)
T TIGR00902 10 ALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI--GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAF 87 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 34455555666788888999999999999999 999999999999999999999999998554322211 111121 23
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHh
Q 022246 188 CATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267 (300)
Q Consensus 188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~ 267 (300)
+..+++++.+++.|+++|.+.+...+...++..+. .++|++++|....+..+|.+++|++++.+.+. .|||+.|++.
T Consensus 88 ~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~-~g~~~~f~~~ 164 (382)
T TIGR00902 88 SAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM-FDEQNILAIL 164 (382)
T ss_pred HHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH-cChhHHHHHH
Confidence 44678899999999999998888888888877654 47789999999999999999999999999876 8999999887
Q ss_pred HHHHHHHHHH
Q 022246 268 AIPSILLALG 277 (300)
Q Consensus 268 ~~~~~~~~~~ 277 (300)
+++.++.++.
T Consensus 165 ~~~~~~~~~~ 174 (382)
T TIGR00902 165 TAGLAFMLIG 174 (382)
T ss_pred HHHHHHHHHH
Confidence 6654333333
No 95
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=6.4e-17 Score=137.81 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=132.9
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhh
Q 022246 135 GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAI 214 (300)
Q Consensus 135 ~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 214 (300)
+-++.+. |++.+...+.+.+.+++.|.+.||+|+|..+++|++++...++++++..++++++++|.++|+|.++....
T Consensus 102 ~~e~~~i--G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 102 DRENTQI--GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred cccccch--hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence 3344555 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCcc-cchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246 215 VPLYISEISPTE-IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (300)
Q Consensus 215 ~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 281 (300)
..++++|.||.+ +|+.++|+.-.+..+|..+||.+||.+.+. .|.+..|.+.++++++-..+.+++
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-AGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-cCCcCcHHHHHHHHHHHHHHHHhe
Confidence 999999999986 479999999999999999999999999887 899999999999998876665554
No 96
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.68 E-value=1.2e-15 Score=134.29 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=127.7
Q ss_pred hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-----CchHHH-HHHhHHHHHHHHHHHHh---h
Q 022246 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRTF-QLDAVPLAAGAFLCATA---Q 192 (300)
Q Consensus 122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-----Grr~~~-~~~~~~~~~~~~~~~~~---~ 192 (300)
.+++..|.+.+++|++.++. ++.... .+...+ .+++|+++||+ ||||.+ +.+.++.++...+.++. .
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~--g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTI--GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHH--HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 55668899999999999988 777655 444444 89999999998 898874 56777777776677666 4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc--------hHHHH
Q 022246 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW--------WRTMF 264 (300)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------w~~~f 264 (300)
+.+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+... .+ ||+.|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~g~~~~~~~~wr~~f 160 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP-EFANTGLITLWGYIF 160 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccHHHH
Confidence 5666777778888888888899999999999999999999999999999999999999888765 55 99999
Q ss_pred HHhHHHHHHHHHHhhc-CCCC
Q 022246 265 GLAAIPSILLALGMGL-SPES 284 (300)
Q Consensus 265 ~~~~~~~~~~~~~~~~-~pe~ 284 (300)
++.+++.++..+..++ .||+
T Consensus 161 ~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 161 FWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCC
Confidence 9999887776655443 5664
No 97
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.67 E-value=1.9e-15 Score=134.43 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=127.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCch----HHHHHHhHHHHHHHHHH
Q 022246 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT----RTFQLDAVPLAAGAFLC 188 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr----~~~~~~~~~~~~~~~~~ 188 (300)
++......+.+.+.+|.+.+++|.+..+. |+..+++.++..++++++|+++||+||| +.+.+...+ ......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i--G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI--GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHH--HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHH
Confidence 33444445677788888889999999998 9999999999999999999999999984 332222221 122233
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (300)
Q Consensus 189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~ 268 (300)
...++++.+++.|++.|++.+...+...+++.++ .++|+++.+.......+|..++|++++.+.+. .|||..|++.+
T Consensus 89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-~g~~~~f~~~~ 165 (382)
T PRK11128 89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-FGEQAILWILT 165 (382)
T ss_pred HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-cChhHHHHHHH
Confidence 4457899999999999999888888877777776 45688888998888999999999999999876 79999999888
Q ss_pred HHHHHHHHHhhcCCCC
Q 022246 269 IPSILLALGMGLSPES 284 (300)
Q Consensus 269 ~~~~~~~~~~~~~pe~ 284 (300)
+..++..+..++.||.
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (382)
T PRK11128 166 AGVASMLLGQLLRPTI 181 (382)
T ss_pred HHHHHHHHHHHccCCC
Confidence 7655555444555654
No 98
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.67 E-value=8.6e-15 Score=129.47 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=128.1
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 205 (300)
...++.+++|.++.+. +++.....+...++.++.|++.||+|||+++..+.++..+..+.....++.+.+++.+++.|
T Consensus 222 ~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 299 (375)
T TIGR00899 222 MPLLIIHELGLPDKLA--GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNA 299 (375)
T ss_pred hHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678899988877 77777777777788899999999999999988887776666666666778888888889999
Q ss_pred HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCC
Q 022246 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE 283 (300)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe 283 (300)
++.+...+....++.|..|+ +++.++++++....+|..++|.+++.+.+. .||+..|++.+++.++..+..++++|
T Consensus 300 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 300 IFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER-WSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHheecC
Confidence 99888888888899999875 567999999999999999999999998776 78999999999888877777666654
No 99
>PRK09952 shikimate transporter; Provisional
Probab=99.66 E-value=7.4e-15 Score=132.92 Aligned_cols=160 Identities=18% Similarity=0.104 Sum_probs=118.4
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH---h-hhHHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT---A-QSVQTMII 199 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~ 199 (300)
.+.++++.+++|++.... ..+..+..+...++.+++|+++||+|||++++.+.++.+++.+.+.. . ++...+++
T Consensus 271 ~~~~~y~~~~~g~s~~~~--~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T PRK09952 271 AFALNYSTQNLGLPRELF--LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFF 348 (438)
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 445567778889887654 44555566667788899999999999999988877665554433322 1 23444445
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHH-HHHHHHHHHHHHhhhhccCC-CCchHHHHHHhHHHHHHHHHH
Q 022246 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLALG 277 (300)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~-~~~w~~~f~~~~~~~~~~~~~ 277 (300)
..++.+++.+...+..++++.|.+|++.|+.+.++.+ .+..+|+.++|.+.+.+.+. ..+|+..+.+.+++.++.++.
T Consensus 349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~ 428 (438)
T PRK09952 349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT 428 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 5667788888888888999999999999998888844 44568899999999988763 245888888888887777777
Q ss_pred hhcCCCCh
Q 022246 278 MGLSPESP 285 (300)
Q Consensus 278 ~~~~pe~~ 285 (300)
.+.++|+.
T Consensus 429 ~~~~~~~~ 436 (438)
T PRK09952 429 ALLMKDNQ 436 (438)
T ss_pred HHHccccc
Confidence 66677643
No 100
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.66 E-value=6.5e-15 Score=131.62 Aligned_cols=155 Identities=16% Similarity=0.115 Sum_probs=127.9
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 205 (300)
..+.+..+.|.+ .. ++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++....++.+.+++..++.|
T Consensus 238 ~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 313 (399)
T PRK05122 238 FITLYYAARGWD--GA--ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG 313 (399)
T ss_pred HHHHHHHHcccc--cc--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334334455653 33 56677888888999999999999999999999988888888888888888888888899999
Q ss_pred HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCCh
Q 022246 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESP 285 (300)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~ 285 (300)
++.+..++.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+. .||++.|++.+++.++..+..+++++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-FGYPSIFLAAALAALLGLALTWLLYRRA 392 (399)
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999988888888888999999999999999999999998888888888766 7899999998888877766655555433
No 101
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.66 E-value=2.3e-15 Score=132.71 Aligned_cols=146 Identities=15% Similarity=0.041 Sum_probs=122.9
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhH--HHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV--QTMIIGRVL 203 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~l 203 (300)
..+.+.+++|.+..+. ++..+++.++..++.++.|+++||+|||+.+..+.++.+++.++..+.++. ..+++..++
T Consensus 227 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFL--VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL 304 (377)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence 3444567788887777 888999999999999999999999999999999988888888777666533 334456678
Q ss_pred HHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHH
Q 022246 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL 274 (300)
Q Consensus 204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~ 274 (300)
.|++.+...+....++.|.+|+++|+++.|+.+....+|..++|++.+.+.+. .||++.|++.+++.++.
T Consensus 305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE-IGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHh
Confidence 88888888888888999999999999999999999999999999999998876 78999999888776654
No 102
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.66 E-value=6.5e-16 Score=140.70 Aligned_cols=177 Identities=17% Similarity=0.135 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHH
Q 022246 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (300)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~ 181 (300)
-|.+++..++......-....+..+.+.++++++.+..+. +|+.++......+..++.+.+.||+|.|++.+.|.++.
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~--~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~ 121 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI--AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVA 121 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH--HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHH
Confidence 3555555555555544444555668899999999998887 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHH-HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246 182 AAGAFLCATAQSVQTMIIGR-VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (300)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w 260 (300)
+++.++.+++++++.+++.. ++.|+|.+..+.....++..+|. ++|+.+.|+...+..+|.++-|.+.-.+.+. .||
T Consensus 122 ~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~-~G~ 199 (509)
T KOG2504|consen 122 ALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSK-YGW 199 (509)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHH-hCc
Confidence 99999999999999988776 89999999999999999997775 6699999999999999998888888788776 899
Q ss_pred HHHHHHhHHHHHHHHHHhhcCC
Q 022246 261 RTMFGLAAIPSILLALGMGLSP 282 (300)
Q Consensus 261 ~~~f~~~~~~~~~~~~~~~~~p 282 (300)
|+.+++.+.+.+-+.+..+.++
T Consensus 200 r~~~l~~~~~~l~~~~~~~~~r 221 (509)
T KOG2504|consen 200 RGALLIFGGISLNVLVAGALLR 221 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999888876666555543
No 103
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.66 E-value=8.5e-15 Score=127.74 Aligned_cols=159 Identities=25% Similarity=0.335 Sum_probs=140.3
Q ss_pred HHhhhhhHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchH-HHHHHhHHHHHHHHHHHHhhhHHHH
Q 022246 120 LGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR-TFQLDAVPLAAGAFLCATAQSVQTM 197 (300)
Q Consensus 120 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~l 197 (300)
........+.+.++ +|.+..+. ++..+...++..++.++++++.||+|||+ .+..+.++..++.++....++.+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 268 (352)
T cd06174 191 YYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALL 268 (352)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33444455544444 48888887 89999999999999999999999999999 9999999999999999998888889
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH
Q 022246 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (300)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 277 (300)
++..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+. .+|++.|++.+++.++..+.
T Consensus 269 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-GGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876 88999999999998887776
Q ss_pred hhcC
Q 022246 278 MGLS 281 (300)
Q Consensus 278 ~~~~ 281 (300)
.+++
T Consensus 348 ~~~~ 351 (352)
T cd06174 348 LLLL 351 (352)
T ss_pred heec
Confidence 6554
No 104
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.66 E-value=5.3e-15 Score=134.99 Aligned_cols=155 Identities=17% Similarity=0.092 Sum_probs=117.3
Q ss_pred hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH--HHHHhhhHHHHHHHHH
Q 022246 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF--LCATAQSVQTMIIGRV 202 (300)
Q Consensus 125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~ 202 (300)
+.+.++++++|++..+. ++..+...++..++.+++|+++||+|||+.++....+..++.. ......+...+.++++
T Consensus 280 ~~p~yl~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (467)
T PRK09556 280 WSPVYAFQELGFSKEDA--INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLF 357 (467)
T ss_pred HHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34557788899998888 8888999999999999999999999999877665444433322 2223346666667788
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHH-HHHHHHHhhhhccCC-----------CCchHHHHHHhHHH
Q 022246 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGN-----------PLWWRTMFGLAAIP 270 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-----------~~~w~~~f~~~~~~ 270 (300)
+.|++..+........+.|.+|++.||++.|+.+....+ |..++|.+.|.+.+. ..+|+..|++.+++
T Consensus 358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~ 437 (467)
T PRK09556 358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA 437 (467)
T ss_pred HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence 888655444444446777999999999999999988886 778999999998871 26799999998777
Q ss_pred HHHHHHHhhcC
Q 022246 271 SILLALGMGLS 281 (300)
Q Consensus 271 ~~~~~~~~~~~ 281 (300)
.+++.+..+++
T Consensus 438 ~~~~~~~~~~~ 448 (467)
T PRK09556 438 AIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHH
Confidence 77766555443
No 105
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.66 E-value=8.1e-15 Score=130.94 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=121.1
Q ss_pred HHHHHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH---
Q 022246 113 AILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC--- 188 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~--- 188 (300)
.++.+.....+.+..+ ++.+++|.+..+. +++.+++.++..++++++|+++||+|||+.++.+.+..++.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 88 (396)
T TIGR00882 11 FFLYFFIMSAYFPFFPIWLHDVNGLSKTDT--GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIY 88 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555544 6677899999988 999999999999999999999999999999988766665443322
Q ss_pred HHh-----hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHH
Q 022246 189 ATA-----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263 (300)
Q Consensus 189 ~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~ 263 (300)
.+. .....+++.+++.|++.+...+....+..|.. ++++..++.......+|.+++|.+++.+.+ .+|++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~--~~~~~~ 164 (396)
T TIGR00882 89 VFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS--IDPQIV 164 (396)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc--cCchHH
Confidence 111 12334566678888888777777777776653 334567777778888999999999988754 689999
Q ss_pred HHHhHHHHHHHHHHhhc-CCCC
Q 022246 264 FGLAAIPSILLALGMGL-SPES 284 (300)
Q Consensus 264 f~~~~~~~~~~~~~~~~-~pe~ 284 (300)
|++.+++.++..++.++ .||.
T Consensus 165 f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 165 FWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 99998888776655544 4554
No 106
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.63 E-value=5e-15 Score=136.37 Aligned_cols=164 Identities=18% Similarity=0.092 Sum_probs=111.3
Q ss_pred hhhHHHHHHHhCCChhhhH---------HH-HHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhh
Q 022246 124 NGALEYLAKDLGIAENTVL---------QG-WIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS 193 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~---------~~-~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~ 193 (300)
....|.+.++.|++..... .. ....+..++..++.+++++++||+|||++++++.++.+++.++.++..+
T Consensus 308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~ 387 (502)
T TIGR00887 308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN 387 (502)
T ss_pred ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666678888654210 00 1233344556668889999999999999998888777776665554321
Q ss_pred ----HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC---------CCch
Q 022246 194 ----VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN---------PLWW 260 (300)
Q Consensus 194 ----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~w 260 (300)
...+...-++..++..+..+..+.+.+|.+|++.|+++.++.+....+|.+++|.+.+.+.+. ..++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 467 (502)
T TIGR00887 388 HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWM 467 (502)
T ss_pred hcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccc
Confidence 111111112222222334566778889999999999999999999999999999999888763 1345
Q ss_pred HHHHHHhHHHHHHHHHHhhcCCCChhH
Q 022246 261 RTMFGLAAIPSILLALGMGLSPESPRW 287 (300)
Q Consensus 261 ~~~f~~~~~~~~~~~~~~~~~pe~~~~ 287 (300)
...|++.+++.++..++++++|||++.
T Consensus 468 ~~~~~i~~~~~~~~~i~~~~lpEt~~~ 494 (502)
T TIGR00887 468 GHVLEIFALFMFLGILFTLLIPETKGK 494 (502)
T ss_pred hHHHHHHHHHHHHHHHHheEeccCCCC
Confidence 667777777777766666778998753
No 107
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.62 E-value=2.9e-14 Score=128.41 Aligned_cols=155 Identities=15% Similarity=0.047 Sum_probs=104.1
Q ss_pred hhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH---HhhhHH-HHH
Q 022246 123 VNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---TAQSVQ-TMI 198 (300)
Q Consensus 123 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~---~~~~~~-~l~ 198 (300)
......++.+++|++..+. |++.+++.++..++++++|+++||+|||++++++..+.+++..... ..+... ..+
T Consensus 30 ~~~~~~~l~~~~g~s~~~~--g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (420)
T PRK09528 30 FSFFPIWLHDINGLSGTDT--GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNIL 107 (420)
T ss_pred HHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445557777899999988 9999999999999999999999999999999887666554433221 111111 011
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhccCC--cccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 199 IGRVLAGIGIGISSAIVPLYISEISP--TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 199 ~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
...++.++..+.........+.++.+ .++++..++.......+|..++|++++.+.+ .+|++.|++.+++.++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~--~~~~~~f~~~~~~~~~~~~ 185 (420)
T PRK09528 108 LGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN--INPQINFWLGSGSALILLV 185 (420)
T ss_pred HHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh--cCchHhHHHHHHHHHHHHH
Confidence 11222233223222222222222222 2456778888888889999999999998864 5799999998888776666
Q ss_pred HhhcC
Q 022246 277 GMGLS 281 (300)
Q Consensus 277 ~~~~~ 281 (300)
.++++
T Consensus 186 ~~~~~ 190 (420)
T PRK09528 186 LLFFA 190 (420)
T ss_pred HHhcc
Confidence 55554
No 108
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.62 E-value=2.6e-14 Score=126.58 Aligned_cols=150 Identities=19% Similarity=0.170 Sum_probs=109.9
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchH--HHHH------HhHHHHHHHHHHHHhhhHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR--TFQL------DAVPLAAGAFLCATAQSVQTM 197 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~--~~~~------~~~~~~~~~~~~~~~~~~~~l 197 (300)
...++.+++|.+..+. +++.+...++..++.+++|+++||+|||+ .... +.++.++..+.....++.+..
T Consensus 238 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (399)
T TIGR00893 238 FPTYLVQERGLSILEA--GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAA 315 (399)
T ss_pred HHHHHHHHhcccHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 4456677889988877 88899999999999999999999999996 1111 111111111111222344444
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc-hHHHHHHhHHHHHHHHH
Q 022246 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPSILLAL 276 (300)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~ 276 (300)
+...++.+++.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+. .+ |++.|++.+++.++..+
T Consensus 316 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~-~g~~~~~~~~~~~~~~~~~~ 393 (399)
T TIGR00893 316 LALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT-TGSFAGALMVVAALALIGAL 393 (399)
T ss_pred HHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC-CCchhHHHHHHHHHHHHHHH
Confidence 444444444444 7888999999999999999999999999999999999999999876 56 99999998888776655
Q ss_pred Hhh
Q 022246 277 GMG 279 (300)
Q Consensus 277 ~~~ 279 (300)
..+
T Consensus 394 ~~~ 396 (399)
T TIGR00893 394 SYL 396 (399)
T ss_pred HHH
Confidence 443
No 109
>PRK03699 putative transporter; Provisional
Probab=99.62 E-value=3e-14 Score=127.23 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=130.1
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 203 (300)
.+..+++.+++|++..+. +++.+.+.++..++.+++|+++||+|||+++.....+.++..++....++...+.+..++
T Consensus 226 ~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDA--GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILG 303 (394)
T ss_pred HHHHHHHHHHcCCChHHh--hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 445556778889998888 899999999999999999999999999999988877777766666667777777777788
Q ss_pred HHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCC
Q 022246 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE 283 (300)
Q Consensus 204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe 283 (300)
.|++.++.++....+..+..| +.++...++......+|..++|.+.+.+.+. .||+..+++.+++.+++.+...++++
T Consensus 304 ~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 304 LGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH-FGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH-hCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 899888888888888888776 4467888888888899999999999999876 78999999988887777666555554
Q ss_pred Chh
Q 022246 284 SPR 286 (300)
Q Consensus 284 ~~~ 286 (300)
..|
T Consensus 382 ~~~ 384 (394)
T PRK03699 382 VSK 384 (394)
T ss_pred HHH
Confidence 433
No 110
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.62 E-value=1.2e-14 Score=128.97 Aligned_cols=145 Identities=20% Similarity=0.131 Sum_probs=112.5
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH--HHHHH--hhhHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA--FLCAT--AQSVQTMIIGR 201 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~~ 201 (300)
...++++++|.+..+. ++......++..++.+++|+++||+|||+.+..+..+..+.. +.... ..+.+.+++..
T Consensus 242 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (394)
T TIGR00883 242 LPTYLTQTLGLSANSA--LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLV 319 (394)
T ss_pred HHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4445667889988877 888888999999999999999999999998775554444333 22222 24566666777
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHH-HHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 272 (300)
++.|++.+...+....++.|.+|+++|+++.++ ++.+..+|..++|.+++.+.+....|++.++...+..+
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 320 LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 888998888899999999999999999999998 45666788899999999998763338887777665444
No 111
>PRK12382 putative transporter; Provisional
Probab=99.62 E-value=4e-14 Score=126.26 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=126.1
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 205 (300)
..+.+.++.+.+. . ++....+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|
T Consensus 238 ~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 313 (392)
T PRK12382 238 FVSLYFASKGWAM--A--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG 313 (392)
T ss_pred HHHHHHHhcCCch--h--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444445566643 3 55666777888899999999999999999999998888888888878888888888899999
Q ss_pred HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
++.+...+.....+.|.+|+++||++.++++....+|..++|.+.+.+.+. .||++.|++.+++.++..+..++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-FGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHh
Confidence 999888888888999999999999999999999999999999999999876 78999999998888776655443
No 112
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.61 E-value=1.4e-14 Score=131.71 Aligned_cols=173 Identities=13% Similarity=0.003 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH
Q 022246 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (300)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~ 189 (300)
++..+.............+++.+++|.+..+. ++......++..++.+++|+++||+|||+.+..+.++.+++.++.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (481)
T TIGR00879 290 VLQWFQQFTGINAIMYYSPTIFENAGVSTDHA--FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG 367 (481)
T ss_pred HHHHHHHHhCCeehHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 33333333333344557788888999988766 7888888899999999999999999999999988887777766665
Q ss_pred Hh-----h------hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 022246 190 TA-----Q------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL 258 (300)
Q Consensus 190 ~~-----~------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 258 (300)
+. + +...++...++.+....+..+....++.|.+|+++|++++++.+....+|.+++|.+.+.+.+. .
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~-~ 446 (481)
T TIGR00879 368 ILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES-I 446 (481)
T ss_pred HHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 21 1 2223333333333333334466677889999999999999999999999999999999988766 7
Q ss_pred chHHHHHHhHHHHHHHHHHh-hcCCCCh
Q 022246 259 WWRTMFGLAAIPSILLALGM-GLSPESP 285 (300)
Q Consensus 259 ~w~~~f~~~~~~~~~~~~~~-~~~pe~~ 285 (300)
+|++.|++.++++++.+++. ++.||++
T Consensus 447 ~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 447 GVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred CccceehhHHHHHHHHHHHHheecccCC
Confidence 89999999888887766654 4567765
No 113
>PRK03545 putative arabinose transporter; Provisional
Probab=99.61 E-value=9.8e-14 Score=123.71 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=121.8
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH-HHHHHhhhHHHHHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA-FLCATAQSVQTMIIGRV 202 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 202 (300)
.+..+++.+.+|.+.... +++.+...++..++.++.|+++||+|||.+++. ..+..++. ++....++.+.++++.+
T Consensus 226 ~~~~~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ 302 (390)
T PRK03545 226 SYIEPFVQQVAGLSENFA--TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPAANSEWHLSVLSI 302 (390)
T ss_pred HHHHHHHHHhcCCCccHH--HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 445667777789988877 888899999999999999999999998875444 34333433 33445677778888888
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
+.|++.+...+.....+.+..| +.|++++|+++....+|..+||+++|.+.+. .|++..|++.+++.++..+...+
T Consensus 303 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 303 FWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH-LGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHH
Confidence 9999887777777788888876 6789999999999999999999999999877 89999999999888776654433
No 114
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.60 E-value=2.6e-14 Score=129.96 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=121.6
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc--CchHHHHH--HhHHHHHHHHHHHHhhhHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTFQL--DAVPLAAGAFLCATAQSVQTMIIGR 201 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~--Grr~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (300)
.++.+.+++|++.... +++.++..++..++.+++|+++||. ++|+...+ +.++.+++.+++...++++.+++.+
T Consensus 263 ~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 263 FLVPYAKDKGVDEYEA--AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 4444456789988887 8999999999999999999999984 34433333 3344445555666778888888899
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 277 (300)
++.|++.+...+....++.|.+|++++++++++++....+|.+++|.+++.+.+...+|++.|++.+++.++..+.
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 9999999998899999999999999999999999999999999999999999876447999999988877665543
No 115
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.60 E-value=7.9e-14 Score=125.42 Aligned_cols=158 Identities=15% Similarity=0.051 Sum_probs=131.7
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 205 (300)
...++.+.+|.+.... +++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.++++.++.|
T Consensus 246 ~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (417)
T PRK10489 246 YPALADEVWQMGAAQI--GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG 323 (417)
T ss_pred hHHHHHhccCCChhHh--HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 3345555589988777 89999999999999999999999988888888888888888888888888887788888999
Q ss_pred HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH-HHHHhhcCCCC
Q 022246 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL-LALGMGLSPES 284 (300)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~pe~ 284 (300)
++.+...+...+++.|.+|++.||+++|+++....+|..+++.+.|.+.+. .|++..+++.++..++ ..+..+.+++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM-MTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 988877778888999999999999999999999999999999999999876 7788888776665544 45555667776
Q ss_pred hh
Q 022246 285 PR 286 (300)
Q Consensus 285 ~~ 286 (300)
++
T Consensus 403 ~~ 404 (417)
T PRK10489 403 RR 404 (417)
T ss_pred cc
Confidence 64
No 116
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.59 E-value=1.5e-13 Score=122.13 Aligned_cols=148 Identities=11% Similarity=0.035 Sum_probs=127.7
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 205 (300)
..+++ +++|.+.... +++.++..++..++.++.+++.||+|+|+.+.++.++.++..++.++.++.+.+++..++.|
T Consensus 228 ~~~~l-~~~g~s~~~~--g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g 304 (382)
T TIGR00902 228 SAIYW-QAAGISASAT--GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC 304 (382)
T ss_pred HHHHH-HHCCCCHhHH--HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 44444 5699998888 88888899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhccCCcccchhhHHHHH-HHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh
Q 022246 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (300)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 279 (300)
+..+...+....++.+. |+++|+++.++++ ....+|.+++++++|.+.+. .|+ ..|++.+++.++..++++
T Consensus 305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-~g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-LGA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 9899999999976 56789999999999999887 676 556666666665554443
No 117
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.59 E-value=1.5e-13 Score=122.67 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=122.0
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGRVLA 204 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~ 204 (300)
..|.+.+++|.+..+. ++..+++.++..++.+++|++.||+|||+.+..+..+.+++.++....+ +...+ ..++.
T Consensus 227 ~lp~~l~~~g~s~~~a--g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~ 302 (393)
T PRK09705 227 WLPAFYIEIGASAQYS--GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVC 302 (393)
T ss_pred HHHHHHHHcCCChhhh--hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHH
Confidence 4444445689998888 8999999999999999999999999999999888877777666544323 22222 23456
Q ss_pred HHhhhhhhhhhhhhhhccCC-cccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH-HhhcCC
Q 022246 205 GIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-GMGLSP 282 (300)
Q Consensus 205 G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~p 282 (300)
|++.+..++.......+.++ +++|++..++.+....++..++|.+.+++.+...+|...|++.+++.++..+ ..++.|
T Consensus 303 g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 303 GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 78877777877777777775 5788999999999999999999999999988645688888888777766554 455668
Q ss_pred CChhHH
Q 022246 283 ESPRWL 288 (300)
Q Consensus 283 e~~~~~ 288 (300)
|++...
T Consensus 383 ~~~~~~ 388 (393)
T PRK09705 383 ARFPQL 388 (393)
T ss_pred ccccch
Confidence 876543
No 118
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.59 E-value=5.7e-14 Score=127.66 Aligned_cols=162 Identities=17% Similarity=0.127 Sum_probs=109.7
Q ss_pred hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc--CchHHH-HHHhHHHHHHHHHHHH--hhhHHH
Q 022246 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTF-QLDAVPLAAGAFLCAT--AQSVQT 196 (300)
Q Consensus 122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~--Grr~~~-~~~~~~~~~~~~~~~~--~~~~~~ 196 (300)
...+.+.++++++|++..+. ++...++.++..++.+++|+++||+ |||+.. +....+..++.++... ..+...
T Consensus 272 ~~~~~P~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 349 (452)
T PRK11273 272 ILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTV 349 (452)
T ss_pred HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHH
Confidence 33445566777789987777 7888888899999999999999999 555432 2222333333322222 234444
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHH-HHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGIL-AALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (300)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~ 275 (300)
++++.++.|.+..+.......+..|.+|++.||++.|+.+....+|+. ++|.+.+.+.+. .||++.|++.++++++++
T Consensus 350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~-~g~~~~f~~~~~~~~~~~ 428 (452)
T PRK11273 350 DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAV 428 (452)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH-hcchHHHHHHHHHHHHHH
Confidence 444555555544333333445678999999999999999888888765 479999888876 789999998888777665
Q ss_pred HHhh--cCCCChh
Q 022246 276 LGMG--LSPESPR 286 (300)
Q Consensus 276 ~~~~--~~pe~~~ 286 (300)
+... ..+|+++
T Consensus 429 ~~~~~~~~~~~~~ 441 (452)
T PRK11273 429 ILLIVVMIGEKRH 441 (452)
T ss_pred HHHHHHhccccch
Confidence 5433 3455443
No 119
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.2e-13 Score=118.59 Aligned_cols=176 Identities=18% Similarity=0.173 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (300)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~ 186 (300)
..++...++.++........+|.+++.|+++..++ +++...++.++.++.++.|++.+|+|+|+-++.|+.+++++++
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a--~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA--SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH--HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34444555566666777889999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHH---HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC-------
Q 022246 187 LCA---TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN------- 256 (300)
Q Consensus 187 ~~~---~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~------- 256 (300)
+.. ...++..+++..|+.|.|.+...+..+.+++.+.+++.-...+.+.+..+.+|.+++|++++.+...
T Consensus 94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~ 173 (422)
T COG0738 94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS 173 (422)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence 885 4568889999999999999999999999999999998889999999999999999999999887651
Q ss_pred -----------CCchHHHHHHhHHHHHHHHHHhhc--CCCC
Q 022246 257 -----------PLWWRTMFGLAAIPSILLALGMGL--SPES 284 (300)
Q Consensus 257 -----------~~~w~~~f~~~~~~~~~~~~~~~~--~pe~ 284 (300)
...|++.|...+...+++.+.... +|+.
T Consensus 174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~ 214 (422)
T COG0738 174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDL 214 (422)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcC
Confidence 124788888888777666665544 3543
No 120
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.57 E-value=7.9e-14 Score=124.83 Aligned_cols=136 Identities=21% Similarity=0.154 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccC
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~ 223 (300)
+.+.++..++..++.+++|+++||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+....++.+..
T Consensus 261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 340 (408)
T PRK09874 261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS 340 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC
Confidence 55666777888889999999999999999999988888877777777788888888999999999999999999999999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 224 PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 224 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
|+++||+.++++.....+|..++|.+++.+.+. .+|++.|++.+++.++..+..++
T Consensus 341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-YGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred CcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876 78999999999888776665544
No 121
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.57 E-value=9.8e-14 Score=126.96 Aligned_cols=164 Identities=18% Similarity=0.094 Sum_probs=119.7
Q ss_pred HhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hH--HH
Q 022246 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SV--QT 196 (300)
Q Consensus 121 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~--~~ 196 (300)
....+..|++.+++|.+.... .+......++.+++.+++|+++||+|||++++.+.++.+++.++++... +. ..
T Consensus 288 ~~~~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~ 365 (479)
T PRK10077 288 NVVLYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV 365 (479)
T ss_pred hHHHHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHH
Confidence 344556788888899887666 5666777788889999999999999999999999998888877765431 21 12
Q ss_pred HHHHHHHHHHhhhh-hhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc------CCCCchHHHHHHhHH
Q 022246 197 MIIGRVLAGIGIGI-SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA------GNPLWWRTMFGLAAI 269 (300)
Q Consensus 197 l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~w~~~f~~~~~ 269 (300)
.+.+.++.+++.+. ..+..+.++.|.+|+++|++++|+.+....+|.++++.+.+.+. +. .+|++.|++.++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~ 444 (479)
T PRK10077 366 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH-FHNGFSYWIYGC 444 (479)
T ss_pred HHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh-ccCccHHHHHHH
Confidence 22233344444333 23667899999999999999999999999888888866655433 33 678888988887
Q ss_pred HHHHHHHHh-hcCCCChhH
Q 022246 270 PSILLALGM-GLSPESPRW 287 (300)
Q Consensus 270 ~~~~~~~~~-~~~pe~~~~ 287 (300)
+.++.+++. ++.||+++.
T Consensus 445 ~~~~~~~~~~~~~~e~~~~ 463 (479)
T PRK10077 445 MGVLAALFMWKFVPETKGK 463 (479)
T ss_pred HHHHHHHHHHhccccCCCC
Confidence 776665544 456887643
No 122
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.57 E-value=4.4e-14 Score=126.03 Aligned_cols=141 Identities=25% Similarity=0.223 Sum_probs=114.8
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH-HHHHhhhHHHHHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF-LCATAQSVQTMIIGRV 202 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 202 (300)
....+++.+++|.+..+. +++.+...++..++.++.|+++||+|||+.+..+.++.++..+ ......+.+.+.+..+
T Consensus 259 ~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (405)
T TIGR00891 259 DLLPTYLKADLGLSPHTV--ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLF 336 (405)
T ss_pred hhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 345567778899998888 8899999999999999999999999999998887766533333 3334456666666667
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc-hHHHHHHh
Q 022246 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLA 267 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-w~~~f~~~ 267 (300)
+.|++.++..+....++.|.+|+++|++++|+.+....+|..++|++++.+.+. .| |+..++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~g~~~~~~~~~ 401 (405)
T TIGR00891 337 FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR-LDEYGTALASL 401 (405)
T ss_pred HHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHhh
Confidence 777777777788889999999999999999999999999999999999999886 55 87766653
No 123
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.56 E-value=3e-13 Score=120.21 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=120.6
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 205 (300)
.+|.+.++.|.+.... ++..+...++..+++++.|+++||+|+|+++..+.++..++.+... . ....+...++.|
T Consensus 222 ~lp~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g 296 (381)
T PRK03633 222 LMPLYLNHQGMSDASI--GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG 296 (381)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence 4566666789888777 8888899999999999999999999999999888777776655433 2 233445667778
Q ss_pred HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (300)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 281 (300)
++.+...+.....+.|..|+++++...+.++....+|..++|.++|.+.+. .+|++.|++.+.+.++..+..+..
T Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN-YSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHhc
Confidence 877777899999999999988888888888888999999999999999876 789999999888777665554443
No 124
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.56 E-value=5.5e-14 Score=121.33 Aligned_cols=171 Identities=20% Similarity=0.180 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHH-hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc--CchHHH-HHHhHHHH
Q 022246 107 GVACLGAILFGYHLG-VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTF-QLDAVPLA 182 (300)
Q Consensus 107 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~--Grr~~~-~~~~~~~~ 182 (300)
..+++..++.+.... +..+.+.|+.|..|++..++ ++..+.+-++...|.+++|++|||+ |||... ++.+++..
T Consensus 255 W~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a--~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~ 332 (448)
T COG2271 255 WLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKA--NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT 332 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHH--HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 344444444444444 55556668999999999998 9999999999999999999999996 666554 44555555
Q ss_pred HHHHHHHHhh--hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHH-HHHHHHHhhhhccCCCCc
Q 022246 183 AGAFLCATAQ--SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLW 259 (300)
Q Consensus 183 ~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 259 (300)
++.+....++ |+....++.++.|+...+..-+......|..|++--|++.|+...+..+ |..++....+.+.+. .|
T Consensus 333 ~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~-~g 411 (448)
T COG2271 333 ASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT-WG 411 (448)
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec-CC
Confidence 5566666665 4588888899999998888877778888999999999999999999988 888888888888887 89
Q ss_pred hHHHHHHhHHHHHHHHHHhhc
Q 022246 260 WRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 260 w~~~f~~~~~~~~~~~~~~~~ 280 (300)
|...|++..+.++++.++.+.
T Consensus 412 W~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 412 WDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 999999988887776654433
No 125
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.56 E-value=1.7e-13 Score=125.96 Aligned_cols=143 Identities=21% Similarity=0.121 Sum_probs=111.7
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh--hhHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVL 203 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l 203 (300)
...++.+++|.+..+. +++.+.+.++..++.+++|+++||+|||++++.+.++..+..++.... .+.+.+.+..++
T Consensus 298 lp~~l~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (496)
T PRK03893 298 LPTYLKTDLGYDPHTV--ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF 375 (496)
T ss_pred HHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3445557999998888 899999999999999999999999999999888877666655444332 333444444555
Q ss_pred HHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHH
Q 022246 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271 (300)
Q Consensus 204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 271 (300)
.++...+..+....++.|.+|+++|++++++.+....+|..++|++++.+.+. .||+..+++.++..
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~-~g~~~~~~~~~~~~ 442 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR-LDLGTALASLSFSL 442 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc-CChHHHHHHHHHHH
Confidence 54444445567778899999999999999999999999999999999999876 78988876655444
No 126
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.56 E-value=3e-13 Score=122.07 Aligned_cols=165 Identities=17% Similarity=0.221 Sum_probs=124.9
Q ss_pred HHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc----ccCchHHHHHH-hHHHHHHHHHHHHhhh
Q 022246 119 HLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTRTFQLD-AVPLAAGAFLCATAQS 193 (300)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd----~~Grr~~~~~~-~~~~~~~~~~~~~~~~ 193 (300)
.+.......+.+.+++|++.... +++..+..+...+.+++.|+++| |+|||+.++.+ .+...++.++.+++++
T Consensus 19 ~~~l~~~~l~~yl~~lg~~~~~~--~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~ 96 (477)
T TIGR01301 19 GWALQLSLLTPYVQELGIPHAWA--SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD 96 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence 34444556666778899988877 89999999999999999999999 59999998874 6666666677777655
Q ss_pred HH-----------------HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccc--hhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246 194 VQ-----------------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIR--GALGSVNQLFICVGILAALVAGLPLA 254 (300)
Q Consensus 194 ~~-----------------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (300)
.. .++++..+..++.....+...++++|.+|+++| +.+.++.+....+|.++++.+++...
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~ 176 (477)
T TIGR01301 97 IGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSG 176 (477)
T ss_pred hhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32 223333445567777888889999999998865 68999999999999999999887641
Q ss_pred --C-------C-----CCchHHHHHHhHHHHHHHHH-HhhcCCCCh
Q 022246 255 --G-------N-----PLWWRTMFGLAAIPSILLAL-GMGLSPESP 285 (300)
Q Consensus 255 --~-------~-----~~~w~~~f~~~~~~~~~~~~-~~~~~pe~~ 285 (300)
. . ..+.|+.|++.+++.+++.+ ..++.+|.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 177 LYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 0 0 02678999998888877665 445578865
No 127
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.55 E-value=1.9e-13 Score=123.60 Aligned_cols=153 Identities=18% Similarity=0.103 Sum_probs=106.7
Q ss_pred hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc--Cc-hHHHHHHhHHHHHHHHHHH--HhhhHHHHHH
Q 022246 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GR-TRTFQLDAVPLAAGAFLCA--TAQSVQTMII 199 (300)
Q Consensus 125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~--Gr-r~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 199 (300)
+.++++.+++|++..+. ++..+.+.++..++.+++|+++||+ ++ |+......+...+...... ...+...+.+
T Consensus 265 ~~p~~l~~~~g~s~~~a--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (434)
T PRK11663 265 WGNLYMSETLGVDLVTA--NSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAA 342 (434)
T ss_pred HHHHHHHhccCCCHHHH--HHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHH
Confidence 34556667889998887 8889999999999999999999999 33 3332221111111111111 1223333334
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh
Q 022246 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (300)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 279 (300)
..++.|++..+.......++.|.+|+++|++++|+.+....+|..++|.+.+.+.+. .||+..|++.+++.++..+..+
T Consensus 343 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~-~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 343 CFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI-WHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh-cccHHHHHHHHHHHHHHHHHHH
Confidence 444455543333334456778999999999999999999999999999999999876 7899999999888877665544
Q ss_pred c
Q 022246 280 L 280 (300)
Q Consensus 280 ~ 280 (300)
+
T Consensus 422 ~ 422 (434)
T PRK11663 422 P 422 (434)
T ss_pred H
Confidence 3
No 128
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.55 E-value=6.4e-13 Score=118.97 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=116.7
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH-HHhHHHHHHHHHHHH-----hhhHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCAT-----AQSVQTM 197 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~l 197 (300)
....|.+.+++|++..+. +++.+...++..++.++.|+++||+|||+.+. .+.+..++..+.+.. .++.+.+
T Consensus 242 ~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 319 (402)
T TIGR00897 242 AVFLPMFVAELGFSTSEW--LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA 319 (402)
T ss_pred HHHHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence 345566667899988877 78888889999999999999999999988764 333333333333322 2356666
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH
Q 022246 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (300)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 277 (300)
+++.++.|++.+...+ ....+.|..| ++|++++|+.+....+|..++|.+++.+.+. .||...|++.+++.++..+.
T Consensus 320 ~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~-~g~~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 320 LIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF-FGAIGVVWIFAALYVVSAFL 396 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHH
Confidence 7778888888776544 4456677655 6899999999999999999999999999877 78999999999888777666
Q ss_pred hhcC
Q 022246 278 MGLS 281 (300)
Q Consensus 278 ~~~~ 281 (300)
.+|+
T Consensus 397 ~~~~ 400 (402)
T TIGR00897 397 TAFI 400 (402)
T ss_pred HHHh
Confidence 5554
No 129
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.54 E-value=4.5e-13 Score=121.51 Aligned_cols=164 Identities=13% Similarity=0.025 Sum_probs=140.8
Q ss_pred HHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCch--HHHHHHhHHHHHHHHHHHH-------
Q 022246 120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLDAVPLAAGAFLCAT------- 190 (300)
Q Consensus 120 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr--~~~~~~~~~~~~~~~~~~~------- 190 (300)
.+++.....+..+++|++..+. ..+..+..+..++|.+++|++.||+|.| ++++++++++.+..+...+
T Consensus 298 ~ti~~~~~i~a~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~ 375 (477)
T PF11700_consen 298 NTIISFAGIYATEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFF 375 (477)
T ss_pred HHHHHHHHHHHHHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3344456667778999999887 6777888888999999999999999999 8888888887666555554
Q ss_pred -hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHH
Q 022246 191 -AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI 269 (300)
Q Consensus 191 -~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~ 269 (300)
..+.+.+.++-++.|++.|+.++..-++.+++.|+++.+..+|++........++||++.+.+.+...+-|+.++...+
T Consensus 376 g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~ 455 (477)
T PF11700_consen 376 GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLV 455 (477)
T ss_pred CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 5678889999999999999999999999999999999999999999999999999999999998875568999999888
Q ss_pred HHHHHHHHhhcCCCCh
Q 022246 270 PSILLALGMGLSPESP 285 (300)
Q Consensus 270 ~~~~~~~~~~~~pe~~ 285 (300)
+.++.+++.++++.++
T Consensus 456 lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 456 LFLIGLILLFFVDVEK 471 (477)
T ss_pred HHHHHHHHHhhccchh
Confidence 8888888777776654
No 130
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.54 E-value=3.1e-13 Score=121.55 Aligned_cols=164 Identities=19% Similarity=0.125 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhh-hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc-hHHHHHHhHHHHHHHHHHH
Q 022246 112 GAILFGYHLGVV-NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPLAAGAFLCA 189 (300)
Q Consensus 112 ~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr-r~~~~~~~~~~~~~~~~~~ 189 (300)
..++.+..+++. .+..+++.+++|++..+. |++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..
T Consensus 10 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i--Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 10 MSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI--GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 556678888899999998 999999999999999999999999965 7788888888888888888
Q ss_pred HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhh--------ccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchH
Q 022246 190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYIS--------EISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR 261 (300)
Q Consensus 190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~ 261 (300)
+.++++.+++.|++.|++.+...+...++.. |......|.+..| .+|.+++|++++.+... ..|+
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~-~~~~ 160 (418)
T TIGR00889 88 QVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE-LSNI 160 (418)
T ss_pred HhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc-chhH
Confidence 8889999999999999987766665554432 2222223444444 35777788888776322 3465
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCCh
Q 022246 262 TMFGLAAIPSILLALGMGLSPESP 285 (300)
Q Consensus 262 ~~f~~~~~~~~~~~~~~~~~pe~~ 285 (300)
+ |++.+++.++..++.+++||++
T Consensus 161 ~-f~~~~~~~~~~~~~~~~~~e~~ 183 (418)
T TIGR00889 161 Q-LYITAGSSALLGVFALTLPDIP 183 (418)
T ss_pred H-HHHHHHHHHHHHHHHhcCCCCC
Confidence 4 4455555555555566778765
No 131
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.54 E-value=6.3e-13 Score=112.67 Aligned_cols=175 Identities=23% Similarity=0.319 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
+..+..+.+..+-.....+...+.++.+.+++|+|.+.. |.++++..+...+..++..+|+.|+|.++.+..++++.+
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a--GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA--GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444455445556677889999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (300)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~ 262 (300)
++.++-... +...++..-.+.|.+.+......++.+-+.||++ -+..+|++.....+|+.+++.+...+.++..+||.
T Consensus 89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~ 166 (395)
T COG2807 89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG 166 (395)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence 999988877 7778888999999999999999999999999854 69999999999999999999999888877568999
Q ss_pred HHHHhHHHHHHHHHHhhcC
Q 022246 263 MFGLAAIPSILLALGMGLS 281 (300)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~ 281 (300)
.+.+.+.++++.++.++.-
T Consensus 167 aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 167 ALGFWALLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999998888877664
No 132
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.53 E-value=2.2e-13 Score=123.19 Aligned_cols=160 Identities=17% Similarity=0.172 Sum_probs=124.4
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc----cCch-HHHHHHhHHHHHHHHHHHHhhh-----
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRT-RTFQLDAVPLAAGAFLCATAQS----- 193 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~----~Grr-~~~~~~~~~~~~~~~~~~~~~~----- 193 (300)
.+..+++.+++|+++... |++.++..+..++..|+.|+++|| +||| +.++.+.++++++.+++...++
T Consensus 20 ~~l~~~~~~~~g~s~~~~--g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~ 97 (437)
T TIGR00792 20 TYLLFFYTDVLGLSAAFV--GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATG 97 (437)
T ss_pred HHHHHHHHHccCCCHHHH--HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcch
Confidence 446778888999999888 999999999999999999999997 6774 4677788888888777776553
Q ss_pred -HHHHHHHHHHHHHhhhhhhhhhhhhhhccC-CcccchhhHHHHHHHHHHHHHHHHHhhhhcc------CCCCchHHHHH
Q 022246 194 -VQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPLA------GNPLWWRTMFG 265 (300)
Q Consensus 194 -~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~w~~~f~ 265 (300)
...+++.+++.+++.+.......++..|+. ++++|++..++...+..+|..+++.+.+.+. ....+||+.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~ 177 (437)
T TIGR00792 98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFAL 177 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHH
Confidence 456667788888888887778888889987 4688999999988888887766655544332 12368999999
Q ss_pred HhHHHHHHHHH-HhhcCCCCh
Q 022246 266 LAAIPSILLAL-GMGLSPESP 285 (300)
Q Consensus 266 ~~~~~~~~~~~-~~~~~pe~~ 285 (300)
+.+++.++..+ .+++.||++
T Consensus 178 i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 178 VLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHHHHcCCEecC
Confidence 99888876655 445567754
No 133
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.52 E-value=1.3e-12 Score=117.81 Aligned_cols=135 Identities=15% Similarity=0.063 Sum_probs=99.5
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVL 203 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l 203 (300)
..|.+.++.|.+.... +...+...++..++.+++|+++||+|||+.+..+.++.++..+.....+ +...+.+..+.
T Consensus 253 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (426)
T PRK12307 253 LLPTYLAGEGFDTGVV--SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFG 330 (426)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 4555556678887777 7888888999999999999999999999999888877766655444332 22222222222
Q ss_pred HHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHH
Q 022246 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263 (300)
Q Consensus 204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~ 263 (300)
.+++..+..+..+.++.|.+|++.||+++|+......+|+.++|++.+.+.+. .++...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~-~g~~~~ 389 (426)
T PRK12307 331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT-MGLGAA 389 (426)
T ss_pred HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc-ccHHHH
Confidence 22222233455667889999999999999999999999999999999998866 665544
No 134
>PRK10504 putative transporter; Provisional
Probab=99.51 E-value=1.7e-12 Score=118.54 Aligned_cols=132 Identities=12% Similarity=0.100 Sum_probs=106.8
Q ss_pred hhhhhHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh---hhHHHH
Q 022246 122 VVNGALEYLAK-DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQTM 197 (300)
Q Consensus 122 ~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l 197 (300)
......|++.+ .+|.++... ++......++..++.++.|+++||+|||+++..+.++.++..++..+. .+.+.+
T Consensus 279 ~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (471)
T PRK10504 279 MLPFMTPVFLQIGLGFSPFHA--GLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLL 356 (471)
T ss_pred HHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 33445565544 688888777 888888888888888999999999999999998888777776655543 334444
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
.+..++.|++.+..++....++.+..|++.++.+.++.+....+|..+|+.+++.+.+
T Consensus 357 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 357 PFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888888888889999999999999999999999999999999999888754
No 135
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.51 E-value=1.5e-12 Score=117.75 Aligned_cols=159 Identities=15% Similarity=0.025 Sum_probs=103.5
Q ss_pred hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH--H--hhhHHHH
Q 022246 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA--T--AQSVQTM 197 (300)
Q Consensus 122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~l 197 (300)
...+.++++.+++|.+..+. ++..++..++..+++++.|+++||+|||++++.+.++.++..+... . ..+....
T Consensus 262 ~~~~lp~~l~~~~g~s~~~~--~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (432)
T PRK10406 262 FTTYMQKYLVNTAGMHANVA--SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA 339 (432)
T ss_pred HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 33445566777889987777 7778887778888899999999999999988776655443332221 1 1223322
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHH-HHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
+.+-++.+++.+...+....++.|++|++.|+++.|+.+....+ ++...|.+.+.+... ..|...+++.++..++.++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~-g~~~~~~~~~~~~~~i~~~ 418 (432)
T PRK10406 340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI-GMETAFFWYVTLMAVVAFL 418 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHH
Confidence 22222233333444456678889999999999999997765443 344577777765432 4466677766666666666
Q ss_pred HhhcCCC
Q 022246 277 GMGLSPE 283 (300)
Q Consensus 277 ~~~~~pe 283 (300)
..+++++
T Consensus 419 ~~~~l~~ 425 (432)
T PRK10406 419 VSLMLHR 425 (432)
T ss_pred HHHHhhh
Confidence 5555443
No 136
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.50 E-value=1.2e-12 Score=120.09 Aligned_cols=158 Identities=12% Similarity=0.139 Sum_probs=120.1
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHH-HHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH---HHh-hhHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVS-SLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATA-QSVQTMI 198 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~-~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~ 198 (300)
....+++.+++|++..+. ++... ...++..++.+++|+++||+|+|+.+.++.++.++..++. +.. ++...+.
T Consensus 243 ~~~~~~l~~~~G~s~~~~--g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~ 320 (491)
T PRK11010 243 SLTTTFLIRGVGFDAGEV--GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMG 320 (491)
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 346677778899999888 88764 5567899999999999999999988776665545443322 232 3444455
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHh
Q 022246 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM 278 (300)
Q Consensus 199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 278 (300)
+..++..++.|...+...++..+..+++.+++..++.+....+|..+++.+.|.+.+. .||+..|.+.++++++.++..
T Consensus 321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~-~G~~~~f~~~~~~~l~~l~~~ 399 (491)
T PRK11010 321 AAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA-HGWPTFYLFSVAAAVPGLLLL 399 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHH
Confidence 5556656555656667788889999999999999999999999998888888888876 789999999998888877766
Q ss_pred hcCCCC
Q 022246 279 GLSPES 284 (300)
Q Consensus 279 ~~~pe~ 284 (300)
++++++
T Consensus 400 ~~~~~~ 405 (491)
T PRK11010 400 LVCRQT 405 (491)
T ss_pred HHHHhc
Confidence 655543
No 137
>PRK15075 citrate-proton symporter; Provisional
Probab=99.50 E-value=1.2e-12 Score=118.44 Aligned_cols=132 Identities=16% Similarity=0.047 Sum_probs=95.1
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH-H---HHhhhHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL-C---ATAQSVQTMIIGR 201 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~~ 201 (300)
.+.++++.+|++..+. ++....+.++..++.+++|+++||+|||++++.+.++.++..+. . ...+++..+.+..
T Consensus 261 ~p~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (434)
T PRK15075 261 TPTFGKTVLHLSAADS--LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVE 338 (434)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4445666689988877 78888888889999999999999999999988765544332221 1 1123444444445
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHH-HHHHHHHHHHHHhhhhccCCCCch
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNPLWW 260 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~w 260 (300)
++.|++.+...+....++.|.+|++.|++++++.+ .+..+++.++|.+.+.+.+. .|+
T Consensus 339 ~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~-~g~ 397 (434)
T PRK15075 339 LWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV-TGD 397 (434)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh-cCC
Confidence 56667777666777788999999999999999954 44455577788888888765 444
No 138
>TIGR00898 2A0119 cation transport protein.
Probab=99.50 E-value=2.5e-13 Score=125.15 Aligned_cols=137 Identities=19% Similarity=0.108 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhH--HHHHHHHHHHHHhhhhhhhhhhhhhhccCC
Q 022246 147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV--QTMIIGRVLAGIGIGISSAIVPLYISEISP 224 (300)
Q Consensus 147 ~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~ 224 (300)
..+..++..++.++.++++||+|||+++.++.++.+++.++..+.++. +..++..++.+++.++.++..+.+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344556677888999999999999999999999888888877776543 445555667777777888889999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCChh
Q 022246 225 TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR 286 (300)
Q Consensus 225 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~ 286 (300)
++.|++++|+.+....+|.+++|++.+ +.. .++...+++.+++.++..++.+++||+.+
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~lpet~~ 499 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE--KWLFLPLVLFGGLALLAGILTLFLPETKG 499 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH--HHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 999999999999999999999999988 432 55777888888888888787888898764
No 139
>TIGR00895 2A0115 benzoate transport.
Probab=99.50 E-value=1.2e-12 Score=116.25 Aligned_cols=130 Identities=18% Similarity=0.106 Sum_probs=106.7
Q ss_pred hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHH
Q 022246 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGR 201 (300)
Q Consensus 122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (300)
......|++.+++|.+..+. ++..+...++..++.+++|+++||+|||+.+....+......++.....+.+.+++..
T Consensus 268 ~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (398)
T TIGR00895 268 FLTNWLPKLMVELGFSLSLA--ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLG 345 (398)
T ss_pred HHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 44446678888999988877 8899999999999999999999999999554444333333333333356677777888
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 253 (300)
++.|++.++..+....++.|.+|+++|++++|+......+|..++|.++|.+
T Consensus 346 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 346 AIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999999999999999999999999999998875
No 140
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.48 E-value=1.8e-12 Score=118.82 Aligned_cols=158 Identities=22% Similarity=0.188 Sum_probs=128.0
Q ss_pred hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-----hhHHH
Q 022246 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSVQT 196 (300)
Q Consensus 122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~ 196 (300)
+.....+.+..+..-|+... +++..+..+-..+..+++|.++||++||++++.+-++.++..+..++. .+.+.
T Consensus 28 ~~~va~~wlv~~lt~S~~~v--alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~ 105 (524)
T PF05977_consen 28 MQTVALAWLVTQLTGSPLMV--ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWL 105 (524)
T ss_pred HHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHH
Confidence 33345555555655555555 888999999999999999999999999999999887776655444332 47888
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
++++-++.|++.+...|...+++.|+.|+++...+.++.....++..++||.++|.+... .|-.+.|++.++..++.++
T Consensus 106 Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~-~G~~~~f~inalsfl~~i~ 184 (524)
T PF05977_consen 106 LLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF-FGAAAAFLINALSFLISIL 184 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998765 6788899888776665554
Q ss_pred HhhcCC
Q 022246 277 GMGLSP 282 (300)
Q Consensus 277 ~~~~~p 282 (300)
+.+..+
T Consensus 185 ~l~~~~ 190 (524)
T PF05977_consen 185 ALLRWK 190 (524)
T ss_pred HHHHcc
Confidence 444443
No 141
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.47 E-value=5.4e-12 Score=112.24 Aligned_cols=144 Identities=15% Similarity=0.067 Sum_probs=117.8
Q ss_pred HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 022246 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG 207 (300)
Q Consensus 128 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 207 (300)
+.+.++.|.+.... +.+.++..++..++.++.|++.||+|+|+++..+.++.++..++.+..++.+.+++..++.|++
T Consensus 229 ~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 229 AIYWQAAGYSASTI--GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33446789988777 8888888888999999999999999999999999999888888888889999999999999999
Q ss_pred hhhhhhhhhhhhhccCCcccchhhHHHHH-HHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 208 IGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
.+...+....++.+. +++++++..++++ ....+|..++|.++|.+.+. .++ ..|++.+++.++.++
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~-~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH-LGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-HHHHHHHHHHHHHHH
Confidence 998888888888887 5566788888876 55667889999999999876 666 456666665554433
No 142
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.46 E-value=2.3e-12 Score=115.45 Aligned_cols=164 Identities=17% Similarity=0.095 Sum_probs=122.2
Q ss_pred HHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh---hHH
Q 022246 119 HLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ---SVQ 195 (300)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~---~~~ 195 (300)
+...+..+...+.++.|++...+ .++.....+...+..+++.++.||+|||+.++.+..+..+..+++.... +..
T Consensus 285 Gi~ai~~Yst~i~~~aG~~~~~a--~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~ 362 (485)
T KOG0569|consen 285 GINAIFFYSTSIFKTAGFTPEEA--QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF 362 (485)
T ss_pred CcceeHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667778889999999888 7889999999999999999999999999999999998888877665431 111
Q ss_pred ------HHHHHHHHHHHhh-hhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246 196 ------TMIIGRVLAGIGI-GISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (300)
Q Consensus 196 ------~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~ 268 (300)
..+++.++..++. -+..|+.+-+.+|++|++.|+.++++......+..++-.+....+.+. .|- +.|.+..
T Consensus 363 ~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~-~g~-~~filF~ 440 (485)
T KOG0569|consen 363 GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV-IGP-YVFILFV 440 (485)
T ss_pred hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-hhhHHHH
Confidence 1123333333322 234688889999999999999999999999888887776666666544 333 6666677
Q ss_pred HHHHHHHH-HhhcCCCChh
Q 022246 269 IPSILLAL-GMGLSPESPR 286 (300)
Q Consensus 269 ~~~~~~~~-~~~~~pe~~~ 286 (300)
+.+++..+ .++++|||+.
T Consensus 441 i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 441 IPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred HHHHHHHHHHHHhCcccCC
Confidence 76666554 6667899974
No 143
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.46 E-value=2.4e-12 Score=114.98 Aligned_cols=133 Identities=8% Similarity=0.076 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccC
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~ 223 (300)
++..++..+...++.++.|++.||+|||+.++++.++.++..++....++.+.+++..++.|++..........++.+..
T Consensus 257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 336 (396)
T TIGR00882 257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF 336 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77888888888889999999999999999999999888888887778888888888899999988776667777888888
Q ss_pred CcccchhhHHH-HHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH
Q 022246 224 PTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (300)
Q Consensus 224 ~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 277 (300)
+++.+++..+. ++....+|..++++++|.+.+. .||+..|.+.+++.++..+.
T Consensus 337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~-~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS-IGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence 88888887766 6778899999999999999876 78999999988887665443
No 144
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.46 E-value=2.8e-12 Score=117.28 Aligned_cols=154 Identities=18% Similarity=0.108 Sum_probs=111.3
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCch-------HHHHHHhHHHHHHHHHHHHhhhHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT-------RTFQLDAVPLAAGAFLCATAQSVQT 196 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr-------~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (300)
++..+++.+++|++.... +++.+++.++..++.+++|+++||+||| ..+.+..++.++..++.+...+.+.
T Consensus 273 ~~~p~~l~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~ 350 (476)
T PLN00028 273 NIIAEYFYDRFGLSLETA--GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGA 350 (476)
T ss_pred hHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 345567778889998888 8899999999999999999999999875 2333333333343444445556555
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
.++..++.+++.++..+...+++.+..| ++||.+.|+.+.+..+|+.+++.+.+ . ....+|+..|++.+++.+++.+
T Consensus 351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~-~~~~~y~~~f~~~~~~~~i~~~ 427 (476)
T PLN00028 351 AIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-T-GSSYSTETGISLMGVMIIACTL 427 (476)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-h-cCCccHhhHHHHHHHHHHHHHH
Confidence 5556666677666666666677777654 68999999998888888888877654 1 2225799999999888877777
Q ss_pred HhhcCC
Q 022246 277 GMGLSP 282 (300)
Q Consensus 277 ~~~~~p 282 (300)
+.++++
T Consensus 428 ~~~~~~ 433 (476)
T PLN00028 428 PVAFIH 433 (476)
T ss_pred HHHhee
Confidence 666653
No 145
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.46 E-value=1.1e-12 Score=118.89 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=106.3
Q ss_pred hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH---HHHHHHHH--hhhHHH
Q 022246 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA---AGAFLCAT--AQSVQT 196 (300)
Q Consensus 122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~---~~~~~~~~--~~~~~~ 196 (300)
...+...++++..|.+.... ++....+.++..++.+++|+++||+|+++....+..+.. ++.+.... ..+.+.
T Consensus 270 ~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T TIGR00712 270 VLDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV 347 (438)
T ss_pred HHHhHHHHHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 33445566777789888777 888888999999999999999999965432222322221 11122222 123333
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHH-HHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (300)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~ 275 (300)
..+..++.|++..+..........|.+|+++|+++.|+.+....+| .+++|.+.|.+.+. .||.+.|++.+++.++..
T Consensus 348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~-~g~~~~~~~~~~~~~~~~ 426 (438)
T TIGR00712 348 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAV 426 (438)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh-ccchHHHHHHHHHHHHHH
Confidence 3344455555433322233346789999999999999998887776 46899999998876 789999988777765554
Q ss_pred H-HhhcCCCCh
Q 022246 276 L-GMGLSPESP 285 (300)
Q Consensus 276 ~-~~~~~pe~~ 285 (300)
+ ..+++||.+
T Consensus 427 ~~~~~~~~~~~ 437 (438)
T TIGR00712 427 ILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHhhcc
Confidence 4 444566654
No 146
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.45 E-value=9.5e-13 Score=116.21 Aligned_cols=179 Identities=24% Similarity=0.237 Sum_probs=139.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhC----CChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-CchH
Q 022246 98 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG----IAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTR 172 (300)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-Grr~ 172 (300)
+.+..+.++.+=+.-.|.++- +-....-|+..+++ ++++++ .-+.+.|..-.=+.++++||++||+ |+|+
T Consensus 19 ~Pr~l~~if~vE~WERFsyYG---mraiL~~Yl~~~~~~gLg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~ 93 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYG---MRAILILYLYYQLGDGLGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRR 93 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhh---hHHHHHHHHHHhccccCCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 445555554444444444332 22335557777777 888877 4445554443345678999999995 9999
Q ss_pred HHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCccc--chhhHHHHHHHHHHHHHHHHH
Q 022246 173 TFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALV 248 (300)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~ 248 (300)
.++.|.++++++.++.+.+. +...+++..++.++|.|..=+....++.|.+|++. |-.++++++++.++|++++|+
T Consensus 94 tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~ 173 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPI 173 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHH
Confidence 99999999999999999884 78889999999999999999999999999998753 678889999999999999999
Q ss_pred hhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCC
Q 022246 249 AGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP 282 (300)
Q Consensus 249 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~p 282 (300)
+.+++.+. .||...|.+.++-..+.++.+++.+
T Consensus 174 i~~~~~~~-~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 174 ITGLLAIN-YGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999877 8999999999888777777665544
No 147
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.45 E-value=7e-12 Score=109.24 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=130.6
Q ss_pred HhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-hhHHHHHH
Q 022246 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMII 199 (300)
Q Consensus 121 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 199 (300)
..++|.-|++++..|++.+.. +++..++.++..+|++++|+++|| +.|+.+.....+.++..+...+. .+.+..++
T Consensus 229 ~~ftYi~P~L~~v~g~s~~~v--s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~ 305 (394)
T COG2814 229 ALYTYIRPFLESVAGFSVSAV--SLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALA 305 (394)
T ss_pred hhHHhHHHHHHHccCCCHhHH--HHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 366778899999999999888 999999999999999999999999 99998888877777776665554 45556666
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh
Q 022246 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (300)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 279 (300)
.-++.|+..+.........+++ .-++.+..+.+++....++|..+|..+||.+.++ .|+....|+.+++.++.+++.+
T Consensus 306 ~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-~g~~~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 306 LLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA-LGYAATGWVGAALLLLALLLAL 383 (394)
T ss_pred HHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHH
Confidence 6777888877766666667777 4457789999999999999999999999999988 9999999999999888777655
Q ss_pred c
Q 022246 280 L 280 (300)
Q Consensus 280 ~ 280 (300)
.
T Consensus 384 ~ 384 (394)
T COG2814 384 L 384 (394)
T ss_pred H
Confidence 4
No 148
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.45 E-value=2.7e-12 Score=117.01 Aligned_cols=170 Identities=20% Similarity=0.080 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC-----chHHHHHHhHHHH-H
Q 022246 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-----RTRTFQLDAVPLA-A 183 (300)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G-----rr~~~~~~~~~~~-~ 183 (300)
...++..++.........+++.+++|++.++. +...++..+...+-.+ +|+++||++ ||+.++++.++.+ +
T Consensus 32 ~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i--~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~ 108 (468)
T TIGR00788 32 LQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY--QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAI 108 (468)
T ss_pred HHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHH
Confidence 33445555553344456777888899999998 8888888888887544 999999998 7887777776663 4
Q ss_pred HHHHHHHhhhHHHHH-HHHHHHHHhhhhhhhhhhhhhhccCCcccchhh---HHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 022246 184 GAFLCATAQSVQTMI-IGRVLAGIGIGISSAIVPLYISEISPTEIRGAL---GSVNQLFICVGILAALVAGLPLAGNPLW 259 (300)
Q Consensus 184 ~~~~~~~~~~~~~l~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 259 (300)
.....+..++...+. ++.++.+++.+.......+++.|..+ ++++.. .++......+|.++++.++|.+.+. .+
T Consensus 109 ~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~-~~ 186 (468)
T TIGR00788 109 LYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK-TL 186 (468)
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 333344444544444 47889999999999999999999998 555443 3344444568999999999998765 78
Q ss_pred hHHHHHHhHHHHHHHHHHhhcCCCC
Q 022246 260 WRTMFGLAAIPSILLALGMGLSPES 284 (300)
Q Consensus 260 w~~~f~~~~~~~~~~~~~~~~~pe~ 284 (300)
|+..|++.+++.++..+..++++|+
T Consensus 187 ~~~~f~~~a~l~ll~~~~~~~~~E~ 211 (468)
T TIGR00788 187 TRILFLITAALLLLQLFVSNLSKER 211 (468)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988887776666777875
No 149
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.44 E-value=4.8e-13 Score=113.32 Aligned_cols=130 Identities=18% Similarity=0.177 Sum_probs=99.9
Q ss_pred HHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhH
Q 022246 153 GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALG 232 (300)
Q Consensus 153 ~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 232 (300)
.-.-|.++.+++.||+|||+.+..++++++++.++...+.+--...+..|..-++.++.+.+.+.|..|.||+..|+++.
T Consensus 393 aefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgv 472 (528)
T KOG0253|consen 393 AEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGV 472 (528)
T ss_pred hhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcch
Confidence 34567889999999999999999999999999998887755444444444444555666788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCC-CCh
Q 022246 233 SVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP-ESP 285 (300)
Q Consensus 233 ~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~p-e~~ 285 (300)
|.-.....+|+++.|+++ .... .+-.....+.+.+.++..+..+++| ||+
T Consensus 473 GtcSsmaRIggI~~p~iA-~~~e--~s~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 473 GTCSSMARIGGIFSPVIA-MRAE--LSTSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred hhhhhHHhhhhhhhhHHH-HHhc--cceeehHHHHHHHHHHHHHHheeeeeccC
Confidence 999999999999999999 3222 2233444555666666777777776 443
No 150
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.44 E-value=9.2e-12 Score=111.02 Aligned_cols=175 Identities=15% Similarity=0.037 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHH--HHHHHHHHHHHHhhh-hhhccccCchHHHHHHhHHH-
Q 022246 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWI--VSSLLAGATVGSFTG-GSLADKFGRTRTFQLDAVPL- 181 (300)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~~i~~~i~~~~~-g~lsd~~Grr~~~~~~~~~~- 181 (300)
...++..++.++...+...+.+|.+.++.|++.++. |.. .++..+...+.++++ ++++||+|||+.+++...+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i--Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL--AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence 344556677788888888899999999999999988 776 456677777777777 55899999999876554332
Q ss_pred HHHHHHHH---Hhhh-HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC
Q 022246 182 AAGAFLCA---TAQS-VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP 257 (300)
Q Consensus 182 ~~~~~~~~---~~~~-~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 257 (300)
++.....+ ...+ ...++...++.++..+...+....+..|..++++++...+....+..+|.++++.+.+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~- 159 (390)
T TIGR02718 81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK- 159 (390)
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 22222222 1222 333444455566666667777777888888888888888888888889999999888887765
Q ss_pred CchHHHHHHhHHHHHHHHHHhhcCCC
Q 022246 258 LWWRTMFGLAAIPSILLALGMGLSPE 283 (300)
Q Consensus 258 ~~w~~~f~~~~~~~~~~~~~~~~~pe 283 (300)
.|||..|++.+++.++..+..++++|
T Consensus 160 ~gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 160 FGQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 79999999999888776655555433
No 151
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.44 E-value=6.5e-12 Score=126.67 Aligned_cols=149 Identities=23% Similarity=0.287 Sum_probs=125.7
Q ss_pred hhhHHHHHHHhCCChh-hhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH
Q 022246 124 NGALEYLAKDLGIAEN-TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~-~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (300)
.....++.+.+|.+.. .. +++.+...++.+++.+++|+++||+++++++.++.++.+++.++..+..+.+.++++.+
T Consensus 253 ~~~~~~~~~~~g~s~~~~~--g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1146)
T PRK08633 253 ANFPAYAKEVLGLDNTFQV--QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFF 330 (1146)
T ss_pred HhhHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4456677888999887 66 89999999999999999999999999999998888888888888888888888888899
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHH
Q 022246 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL 274 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~ 274 (300)
+.|++.++..+...+++.+..|++.||+++++.++...+|.++++.+++.+.....++...|++.+.+.++.
T Consensus 331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 402 (1146)
T PRK08633 331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG 402 (1146)
T ss_pred HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999998889999999999999999999999999999998888888776543345666676666554443
No 152
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.43 E-value=1.7e-12 Score=114.48 Aligned_cols=137 Identities=19% Similarity=0.227 Sum_probs=101.0
Q ss_pred hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC-chHHHH-HHh-HHHHHHHHHHHH--hhhHHHHHH
Q 022246 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-RTRTFQ-LDA-VPLAAGAFLCAT--AQSVQTMII 199 (300)
Q Consensus 125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G-rr~~~~-~~~-~~~~~~~~~~~~--~~~~~~l~~ 199 (300)
+...++.+.+|.+..+. ++..+.+.++..++.++.|+++||++ ||+..+ ... .+..++...... ..+...+++
T Consensus 238 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (379)
T TIGR00881 238 WSPLYLTQEKGFSKEKA--SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLI 315 (379)
T ss_pred HHHHHHHHHhCCCHHHH--HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Confidence 35556777889988887 88999999999999999999999864 333222 211 112222222222 234555566
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 022246 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (300)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f 264 (300)
+.++.|+...+..+....++.|.+|+++|+++.++++....+|..++|.+.+.+.+. .||++.|
T Consensus 316 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~f 379 (379)
T TIGR00881 316 CLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG-FGWAGAF 379 (379)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh-hcccccC
Confidence 667777766666667778899999999999999999999999999999999999876 7888754
No 153
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.43 E-value=2e-12 Score=113.54 Aligned_cols=130 Identities=17% Similarity=0.262 Sum_probs=114.1
Q ss_pred hhHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhh-HHHHHHHHH
Q 022246 125 GALEYLAK-DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS-VQTMIIGRV 202 (300)
Q Consensus 125 ~~~~~~~~-~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 202 (300)
...|++.+ .+|.+..+. ++..+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ .+.+++..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHY--GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF 309 (365)
T ss_pred HHhHHHHHHHhCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 35565555 489888877 88999999999999999999999999999999888888888777777764 888888899
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN 256 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 256 (300)
+.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+++.+.+.
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988653
No 154
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.43 E-value=4e-12 Score=116.07 Aligned_cols=172 Identities=20% Similarity=0.189 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC--chHHHHHHhHHHHHHHH
Q 022246 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAF 186 (300)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G--rr~~~~~~~~~~~~~~~ 186 (300)
..+...+..+........++.+.++.+++..+. ..+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+
T Consensus 303 ~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a--a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~ 380 (509)
T KOG2504|consen 303 LALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA--AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL 380 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh--HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH
Confidence 334444444555566668888888999999988 89999999999999999999999988 56677788888888888
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHH
Q 022246 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL 266 (300)
Q Consensus 187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~ 266 (300)
.+.++.+++.+++.-.+.|++.|...+....++.|+...++-..+.|+......++.++||.+++.+.+...+|...|++
T Consensus 381 ~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~ 460 (509)
T KOG2504|consen 381 FLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYF 460 (509)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhh
Confidence 99999999999999999999999988888889999999999999999999999999999999999988876669999999
Q ss_pred hHHHHHHHHHHhhcCC
Q 022246 267 AAIPSILLALGMGLSP 282 (300)
Q Consensus 267 ~~~~~~~~~~~~~~~p 282 (300)
.+++.++..+++++.|
T Consensus 461 ~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 461 CGLCFLLSAVLLLILR 476 (509)
T ss_pred cChHHHHHHHHHHHhH
Confidence 9999888887777766
No 155
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.43 E-value=8e-12 Score=114.04 Aligned_cols=155 Identities=19% Similarity=0.086 Sum_probs=106.9
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHH--------HHHhHHH--HHHHHHHHH-hh
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF--------QLDAVPL--AAGAFLCAT-AQ 192 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~--------~~~~~~~--~~~~~~~~~-~~ 192 (300)
.+.+.++.+.+|.+..+. ++..++..++..++.+++|+++||+++|+.. ..+..+. ++..+.... ..
T Consensus 282 ~~lp~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (465)
T TIGR00894 282 TYLPTFISWVLRVSGKEN--GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA 359 (465)
T ss_pred HHHHHHHHHHhCcChHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345557778899988888 8999999999999999999999998754321 1111111 111111222 22
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC--CchHHHHHHhHHH
Q 022246 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP--LWWRTMFGLAAIP 270 (300)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~w~~~f~~~~~~ 270 (300)
+....+++.++.+.+.++..+.......|..|. .+|.+.++.+....+|+.++|.+.+.+.+.. .+|+..|++.++.
T Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~ 438 (465)
T TIGR00894 360 AFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFV 438 (465)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHH
Confidence 344444445555555555555555566677765 7899999999999999999999999887642 4599999998888
Q ss_pred HHHHHHHhhcC
Q 022246 271 SILLALGMGLS 281 (300)
Q Consensus 271 ~~~~~~~~~~~ 281 (300)
.++..++..+.
T Consensus 439 ~~i~~i~~~~~ 449 (465)
T TIGR00894 439 NILCVIFYLIF 449 (465)
T ss_pred HHHHHHHeeee
Confidence 87776665554
No 156
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.42 E-value=6e-12 Score=113.08 Aligned_cols=148 Identities=14% Similarity=0.036 Sum_probs=100.1
Q ss_pred hhhhhHHHHHHHh--CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHH-HHHHhHHHHHHHHHHHHhhhHHHHH
Q 022246 122 VVNGALEYLAKDL--GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT-FQLDAVPLAAGAFLCATAQSVQTMI 198 (300)
Q Consensus 122 ~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (300)
.+....|.+.+++ +.+..+. +.......++..++.+++|+++||++||+. ++...++.+++.++.....+....+
T Consensus 260 ~~~~~~p~~l~~~~~~~s~~~~--~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (412)
T TIGR02332 260 AINIWTPQILQSFNQGSSNIMI--GLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQL 337 (412)
T ss_pred HHHHHHHHHHHhcCCCCcHHHh--HHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3344555555554 5566666 788899999999999999999999997774 3334333333332222222222222
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHH
Q 022246 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271 (300)
Q Consensus 199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 271 (300)
++-++.+++.....+.......|.+|+++|++++|+.+....+|.+++|.+.+.+.+...+|++.|++.++..
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 338 LGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 2222333333333344455667889999999999999999999999999999999887456999998776654
No 157
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.42 E-value=4.6e-12 Score=114.53 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 222 (300)
+++.++..++..++.+++++++||+|+|+++..+.++.+++.++..+. .+.+.+++..++.|++.+...+..+++++|.
T Consensus 260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (437)
T TIGR00792 260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT 339 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 677778889999999999999999999999999988888877766654 3566667777889999998889999999988
Q ss_pred CC-------cccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc--------------hHHHHHHhHHH-HHHHHHHhh-
Q 022246 223 SP-------TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW--------------WRTMFGLAAIP-SILLALGMG- 279 (300)
Q Consensus 223 ~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------------w~~~f~~~~~~-~~~~~~~~~- 279 (300)
.+ ++.+|...|+++....+|..+++.+.+.+.+. .| .++.+....++ .++.+++..
T Consensus 340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~-~G~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~ 418 (437)
T TIGR00792 340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI-IGYVANAAQSPITLNGIKILMFAVPALFLLLAAIIIGR 418 (437)
T ss_pred hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 45569999999999999999999998887643 22 24444444333 344444544
Q ss_pred cCCCChhH
Q 022246 280 LSPESPRW 287 (300)
Q Consensus 280 ~~pe~~~~ 287 (300)
++|.+++.
T Consensus 419 ~y~l~~~~ 426 (437)
T TIGR00792 419 FYKLTEKK 426 (437)
T ss_pred HeeCcHHH
Confidence 66665443
No 158
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.41 E-value=2e-11 Score=108.52 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=111.4
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH-hhhHHHHHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-AQSVQTMIIGRV 202 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 202 (300)
.+..+++.+.+|.++.+. ++..+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..+
T Consensus 220 ~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 297 (382)
T PRK10091 220 SYIKPYMMFISGFSETSM--TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAF 297 (382)
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345677777889988887 89999999999999999999999999999998888877777655543 445555556666
Q ss_pred HHHHhhhhhhhhhhh-hhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh
Q 022246 203 LAGIGIGISSAIVPL-YISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (300)
Q Consensus 203 l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 279 (300)
+.+++..+..+.... ...+..+.+.++.+. .+....+|..+||.++|.+.+...+|++.+++.+++.++......
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 298 ICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 666665544444443 344444545555443 456678999999999999887657899999998877766554433
No 159
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.41 E-value=2.2e-11 Score=105.10 Aligned_cols=145 Identities=16% Similarity=0.110 Sum_probs=112.0
Q ss_pred HHhhhhhHHHHHHH--hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHH
Q 022246 120 LGVVNGALEYLAKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTM 197 (300)
Q Consensus 120 ~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (300)
.++..+...++.+. +|+++++. ++..+.+..+..+|.++.+++.||+|+|+++.++.++.+++.++....++...+
T Consensus 157 ~~~~~w~~~yl~~~~~~g~s~~~a--~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~ 234 (310)
T TIGR01272 157 VSAGSFLVNFLSDPHALGLPEDQA--AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM 234 (310)
T ss_pred HHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34445556666543 68888888 899999999999999999999999999999888888877777666555544333
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHH
Q 022246 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP 270 (300)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~ 270 (300)
...++.|++.+..+|...+...+.+|++ .+.+.++. ....+|+.+.|.+.|.+.+. .|.++.|++..++
T Consensus 235 -~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~-~g~~~a~~v~~~~ 303 (310)
T TIGR01272 235 -WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC-LGIQLAFALPVPC 303 (310)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh-ccchHHHHHHHHH
Confidence 3556889999999999999999988754 45666665 45668889999988888776 6788888754443
No 160
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.41 E-value=1.8e-11 Score=112.32 Aligned_cols=150 Identities=22% Similarity=0.208 Sum_probs=132.8
Q ss_pred hHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022246 126 ALEYL-AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (300)
Q Consensus 126 ~~~~~-~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 204 (300)
.+|.+ .+.+|.+...+ |++.+.+.+|.++|.++.+++.+|+++++++..+.++++++.+..+++++.+..+++.++.
T Consensus 240 LlPl~a~~~l~~~a~~y--Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~ 317 (524)
T PF05977_consen 240 LLPLFARDVLGGGASGY--GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA 317 (524)
T ss_pred hhhHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 45554 56788888877 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHh
Q 022246 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM 278 (300)
Q Consensus 205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 278 (300)
|++.........+.+.+..|++.||+.++++.+....+..+|.++.|.+.+. .|-+..+.+.++..++..++.
T Consensus 318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~-~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH-FGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHH
Confidence 9999998889999999999999999999999999999999999999999876 788888887776655554443
No 161
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.39 E-value=1e-11 Score=107.55 Aligned_cols=162 Identities=16% Similarity=0.109 Sum_probs=139.9
Q ss_pred HhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHH
Q 022246 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIG 200 (300)
Q Consensus 121 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (300)
+.+.....+-..++|++..+. ..+.....+..++|++++|+|.||+|-|+++..+++++.+.++..-+......++++
T Consensus 270 til~~~~~fg~~~~gls~~~l--ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~ 347 (438)
T COG2270 270 TILAMGGVFGAADLGLSSTEL--LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWIL 347 (438)
T ss_pred HHHHHHHHHHHHHcCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHH
Confidence 344445556677999998888 777888888899999999999999999999999999998888877777777777788
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
-.+.|++.|+.++..-++.+++.|+++-++.+|+++.....+..+||++.+.+.+...+-|..+....++.++.++..++
T Consensus 348 gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 348 GLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred HHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence 89999999999999999999999999999999999999999999999999999876567888888777777777777777
Q ss_pred CCCC
Q 022246 281 SPES 284 (300)
Q Consensus 281 ~pe~ 284 (300)
+|+.
T Consensus 428 v~~~ 431 (438)
T COG2270 428 VKVP 431 (438)
T ss_pred ecCC
Confidence 7654
No 162
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.39 E-value=6.7e-11 Score=106.04 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=112.2
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-----hhHHHHHHHH
Q 022246 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSVQTMIIGR 201 (300)
Q Consensus 127 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~ 201 (300)
+.++.+++|.+..+. ++......++..++.++.|+++||+|+|+.+.++.++.+++.++.... .+.+.+++..
T Consensus 239 p~~~~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (406)
T PRK15402 239 PVILISGEQLSSYEY--GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGL 316 (406)
T ss_pred HHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 345667889988777 777777778888999999999999999999988888777776666543 3456667778
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
++.|++.+...+......... ++++||+..+.++....+|..+|+.+++.+.+. .++....+..++..++.++
T Consensus 317 ~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 317 SLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG-GGNGLFNLFNLANGLLWLL 389 (406)
T ss_pred HHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC-CchHHHHHHHHHHHHHHHH
Confidence 889999888777666555444 448899999999999999999999999998766 5666555555555544433
No 163
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.38 E-value=1.2e-11 Score=110.13 Aligned_cols=183 Identities=19% Similarity=0.199 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc-hHHHHHHhHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPL 181 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr-r~~~~~~~~~~ 181 (300)
|+.+.++.+..++.....+++.+..-.+.++++.+.+....|++.++..++.+++.+++|+.+.|.|. |+.++.+.++.
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~ 112 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA 112 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence 56666777777777777776666444444554443333334999999999999999999999999995 77788888889
Q ss_pred HHHHHHH-HHh---h-hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246 182 AAGAFLC-ATA---Q-SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN 256 (300)
Q Consensus 182 ~~~~~~~-~~~---~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 256 (300)
+++.++. ++. + ..+.++++|++.|+|.|. .+..-.|+++-...+.|.++++....+..+|.++||.+...+..-
T Consensus 113 ~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L 191 (488)
T KOG2325|consen 113 IIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL 191 (488)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence 9998877 332 3 567788999999999765 578889999988889999999998888888877777776555321
Q ss_pred C-Cc-----------hHHHHHHhHHHHHHHHH-HhhcCCCChh
Q 022246 257 P-LW-----------WRTMFGLAAIPSILLAL-GMGLSPESPR 286 (300)
Q Consensus 257 ~-~~-----------w~~~f~~~~~~~~~~~~-~~~~~pe~~~ 286 (300)
. .| +...-|+.+++.++..+ +.++++|.++
T Consensus 192 g~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 192 GEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred cCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 0 11 34566777777766655 3444566543
No 164
>PRK10054 putative transporter; Provisional
Probab=99.38 E-value=1.4e-11 Score=110.08 Aligned_cols=149 Identities=14% Similarity=0.057 Sum_probs=114.1
Q ss_pred HhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhhhh
Q 022246 133 DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMIIGRVLAGIGIGIS 211 (300)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~ 211 (300)
+.+.+.... +++.....+.....+++.|++.||+++|+.+..++++.+++.+...+. ++.+.+++..++.|++.+..
T Consensus 238 ~~~~~~~~~--g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 315 (395)
T PRK10054 238 DSDFAEKVV--AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIY 315 (395)
T ss_pred ccchHHHHH--HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Confidence 344444444 677777777777777888999999999999999988888877767654 56776777888999998888
Q ss_pred hhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh-cCCCCh
Q 022246 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG-LSPESP 285 (300)
Q Consensus 212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~-~~pe~~ 285 (300)
.+.....+.+..|++.|+++++..+ ...+|..+||.++|.+.+. .|....|++.+....+..++.+ -.+|+|
T Consensus 316 ~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 316 APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT-LPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH-cChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 8888889999999999999988765 5568999999999999887 6888888877665544444333 344433
No 165
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.37 E-value=2e-11 Score=100.73 Aligned_cols=176 Identities=16% Similarity=0.067 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
|..+..........+. ...++..-|.+++.+|++.++. +.+.+.-.+|..+| ++.|.+.|++|.+.++.+|.+...
T Consensus 2 W~~l~a~~~v~~~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~ 77 (250)
T PF06813_consen 2 WLSLVASIWVQLCSGT-TYTFSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGF 77 (250)
T ss_pred hhhHHHHHHHHHhcCc-ccchhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHH
Confidence 4444443433433332 3345667889999999999998 88888999998775 889999999999999999999999
Q ss_pred HHHHHHHHh-------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 183 AGAFLCATA-------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 183 ~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
++..+...+ .++|.+.+..++.|.+.+...........+.|| ++||++.|+.-....+++.+-..+...+..
T Consensus 78 ~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 78 VGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 888776653 356777777788888877777777777889998 579999999999999988766666555544
Q ss_pred CCCchHHHHHHhHHHHHHHHHHhhcCCCC
Q 022246 256 NPLWWRTMFGLAAIPSILLALGMGLSPES 284 (300)
Q Consensus 256 ~~~~w~~~f~~~~~~~~~~~~~~~~~pe~ 284 (300)
. ..-...+.+.....++.++..++++..
T Consensus 157 ~-~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 157 D-DPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred C-ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 3 323333333333345555555555443
No 166
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.37 E-value=4.5e-11 Score=106.58 Aligned_cols=147 Identities=18% Similarity=0.079 Sum_probs=109.3
Q ss_pred HHHHHHhCCChhhhHHHHHHHHHH-HHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH-H-----hhhHHHHHHH
Q 022246 128 EYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA-T-----AQSVQTMIIG 200 (300)
Q Consensus 128 ~~~~~~~~~s~~~~~~~~~~~~~~-i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~ 200 (300)
+.+.+|.|++.++. +++..+.. +...++.+++|++.||+|+|+++..+.++.++..+... . .++...++..
T Consensus 232 ~~~l~~~G~s~~~i--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 232 KLYLVDAGWPLEWI--GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred hHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 34445689999888 88777765 45667789999999999999998887766533322221 1 1233344445
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCCc-ccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH
Q 022246 201 RVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 277 (300)
..+.+++.+...+.....+.+..++ +.+++.+++.+....+|..++|.++|.+.+. .||+..|++.+++.++.++.
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~-~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR-FGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHH
Confidence 5566667777777777787777776 7889999999999999999999999999876 78999999888776665443
No 167
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.36 E-value=3.7e-11 Score=98.65 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=113.2
Q ss_pred hhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHH-HHHHHHHhhhHHHHHHHH
Q 022246 123 VNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA-GAFLCATAQSVQTMIIGR 201 (300)
Q Consensus 123 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 201 (300)
+......+++.||+|...+ +.+.+......++..++.|.++||+|++...+.+..+..+ +-.+..+ +.+.=.+..
T Consensus 284 i~lg~~fF~~rfGlS~~~a--~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m 359 (459)
T KOG4686|consen 284 ITLGPMFFQKRFGLSAVSA--GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSM 359 (459)
T ss_pred hhhhHHHHHHhhCCChhhc--cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHH
Confidence 3345567899999999888 7777777777888899999999999999887765444333 3333332 233334566
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchH---HHHHHhHHHHHHHHHHh
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR---TMFGLAAIPSILLALGM 278 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~---~~f~~~~~~~~~~~~~~ 278 (300)
.+.|+.....-...+..++-+.|.+..|++.|+.+...++|-.+.|++++++.+...++- ..|.+.+.+++....+.
T Consensus 360 ~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil 439 (459)
T KOG4686|consen 360 TFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGIL 439 (459)
T ss_pred HHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 788888877766788899999999999999999999999999999999999998644333 33444444444444444
Q ss_pred hcC
Q 022246 279 GLS 281 (300)
Q Consensus 279 ~~~ 281 (300)
+.+
T Consensus 440 ~~~ 442 (459)
T KOG4686|consen 440 FYL 442 (459)
T ss_pred hhe
Confidence 444
No 168
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.36 E-value=1.1e-10 Score=104.19 Aligned_cols=149 Identities=11% Similarity=0.021 Sum_probs=114.5
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 203 (300)
.+..|.+.+++|++.... ++....+.++..++.++.+++.||.+++..+....+......++....++.+.+.+..++
T Consensus 237 ~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 314 (394)
T PRK10213 237 TYIRPVYMNLAGFGVDGL--TLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAII 314 (394)
T ss_pred HHHHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 335577788899998877 888999999999999999999999654433333333333334444455677777788899
Q ss_pred HHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
.|++.+...+....++.+..| +++++..++......+|..+|+.++|.+.+. .|++..++..+++.++..+
T Consensus 315 ~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~-~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 315 WGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN-IGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHH
Confidence 999998888888888888887 5567778888888889999999999999876 7888888887766554443
No 169
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.35 E-value=3.3e-11 Score=121.48 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=120.3
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh------------
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA------------ 191 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~------------ 191 (300)
...+.++.+.+|.+.... +++.+.+.++.++|.++.|+++|+.++++.+..+.++.+++.+.+++.
T Consensus 246 ~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (1140)
T PRK06814 246 SQLPLLAKETLGGDENVA--TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK 323 (1140)
T ss_pred HHhHHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence 345567777789988877 999999999999999999999998887776666666655555444432
Q ss_pred --------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHH
Q 022246 192 --------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263 (300)
Q Consensus 192 --------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~ 263 (300)
.+.+.+++..++.|++.+...+...+++.+.+|++.||+++|+.++...+|..+++++++.+.....++...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~ 403 (1140)
T PRK06814 324 SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWI 403 (1140)
T ss_pred chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 566777788889999999999999999999999999999999999999999999999998886443677777
Q ss_pred HHHhHHHHHHH
Q 022246 264 FGLAAIPSILL 274 (300)
Q Consensus 264 f~~~~~~~~~~ 274 (300)
|++.+++.++.
T Consensus 404 ~~~~~~~~~~~ 414 (1140)
T PRK06814 404 ILFIALANLIV 414 (1140)
T ss_pred HHHHHHHHHHH
Confidence 77666554443
No 170
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.33 E-value=1.4e-10 Score=102.47 Aligned_cols=150 Identities=17% Similarity=0.105 Sum_probs=102.7
Q ss_pred hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc---hHHHHH-HhHHHHHHHHHHHHhhhHHHHHHH
Q 022246 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR---TRTFQL-DAVPLAAGAFLCATAQSVQTMIIG 200 (300)
Q Consensus 125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr---r~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 200 (300)
.++|.+.++.|++.. . +...++..++..++ .++++||..| |+.... ..++.++...+.++..+....+++
T Consensus 213 ~wlp~~L~~~g~s~~-~--~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (368)
T TIGR00903 213 IWLEAALRPAGLEDI-A--GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAF 286 (368)
T ss_pred HHHHHHHHHCCCChH-H--HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 344544466787754 3 55566655555544 4677777654 333332 344444444444545455455556
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
.++.|++..+.++..+++.+|.+|++.|+++.|+.+....+|++++|++.+.+.. +.+..|.+.++..++.++..++
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~---~~~~~f~~~~~~~~i~~~~~~~ 363 (368)
T TIGR00903 287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS---SAEAYFTFLAILITIAFAIALL 363 (368)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777778888999999999999999999999999999888888877653 5777888888887777666554
Q ss_pred CCC
Q 022246 281 SPE 283 (300)
Q Consensus 281 ~pe 283 (300)
+++
T Consensus 364 ~~~ 366 (368)
T TIGR00903 364 LPN 366 (368)
T ss_pred CCC
Confidence 444
No 171
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.33 E-value=2.7e-11 Score=104.87 Aligned_cols=166 Identities=19% Similarity=0.075 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH
Q 022246 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (300)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~ 185 (300)
+.+.++..|...... .+.+.-+++++|+++..++ +.....+.+...+..+.+|+|+||+|.++++......++++.
T Consensus 223 lsllY~~tFG~Fvgf--s~~l~~~~~~~fg~~~~~A--g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~ 298 (417)
T COG2223 223 LSLLYFATFGGFVGF--SAYLPMYLVTQFGLSPVTA--GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAA 298 (417)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHhcCCChhhH--HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHH
Confidence 334444444444432 2346668999999999888 889999999999999999999999999999999998888888
Q ss_pred HHHHHhh-------hHHH----HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246 186 FLCATAQ-------SVQT----MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (300)
Q Consensus 186 ~~~~~~~-------~~~~----l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (300)
.+..+.. +... ++...++.|+|.|. .+.++...||. +-|.+.|+......+|+.+.|...+...
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGs----vfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~ 373 (417)
T COG2223 299 ALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGS----VFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSL 373 (417)
T ss_pred HHHHccccccccCcchHHHHHHHHHHHHHhccCcch----heeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHH
Confidence 8777653 3333 34445555555554 44566666654 6799999999999999999898888887
Q ss_pred CCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 255 GNPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 255 ~~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
+....+...|++...+.+++.+..+.
T Consensus 374 ~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 374 DLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 76556999999998888777665433
No 172
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.33 E-value=9.6e-11 Score=104.93 Aligned_cols=150 Identities=18% Similarity=0.214 Sum_probs=104.9
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHH-HHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH---HHh-hhHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATA-QSVQTMIIG 200 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~-i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~ 200 (300)
..+++.+++|++..+. +++..... ++..++.+++|++.||+|+|+.+..+.++.++..+.. +.. ++.+.+++.
T Consensus 232 ~~~~l~~~~G~~~~~~--g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 309 (402)
T PRK11902 232 STTFLIRGAGFSAGEV--GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALA 309 (402)
T ss_pred HHHHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4456778899998877 78776544 4678899999999999999998877766655554332 343 355555544
Q ss_pred H----HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 201 R----VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 201 ~----~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
. ++.|++.+...+....++.+.+|.+.+ ++.+....+|..+++.++|.+.+. .||+..|.+.++++++.++
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~-~G~~~~f~~~~~~~~~~~~ 384 (402)
T PRK11902 310 IGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEA-YGWPGFYLMTVVIALPGLA 384 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHH
Confidence 4 345566666677777777777775544 445555566666556678888776 8999999999888877766
Q ss_pred HhhcCC
Q 022246 277 GMGLSP 282 (300)
Q Consensus 277 ~~~~~p 282 (300)
+.+..+
T Consensus 385 ~~~~~~ 390 (402)
T PRK11902 385 LLWLMR 390 (402)
T ss_pred HHHHHh
Confidence 654443
No 173
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.32 E-value=3.9e-10 Score=99.99 Aligned_cols=137 Identities=20% Similarity=0.305 Sum_probs=102.4
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-----hhHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSVQTMIIG 200 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~ 200 (300)
...++.+++|.++.+. +++.+...++..++.++.|++.||+|+|+.+..+.++..++.++.... ++...+++.
T Consensus 229 ~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (385)
T TIGR00710 229 APFVYIDIMGVSPSVF--GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGP 306 (385)
T ss_pred ChHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3445667899988887 888999999999999999999999999999888877777766655443 234445556
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHH-HHHHHHHhhhhccCCCCchHHHHHHh
Q 022246 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLA 267 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~w~~~f~~~ 267 (300)
.++.|++.+...+.......|.+| ++|+++.++.+..... |.+.+++++ .+.+. .+|...+...
T Consensus 307 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~-~~~~~~~~~~ 371 (385)
T TIGR00710 307 MMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGN-TAWPMSLSCL 371 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hcccc-ChHHHHHHHH
Confidence 778889888888888889999887 6789999998776654 566666655 44333 4555444443
No 174
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.32 E-value=7.1e-11 Score=103.91 Aligned_cols=134 Identities=16% Similarity=0.047 Sum_probs=103.2
Q ss_pred hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-CchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022246 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (300)
Q Consensus 125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 203 (300)
...|.+.++.|.+.... ++..+++.++..++.++.|+++||+ +||+.+..+.++.+++.+++.+.++....+ ..++
T Consensus 218 ~~lp~~~~~~g~~~~~~--g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 294 (355)
T TIGR00896 218 GWLPAILISHGASAATA--GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALV 294 (355)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHH
Confidence 34565556789988777 8999999999999999999999999 566677777777777776666655433322 4567
Q ss_pred HHHhhhhhhhhhhhhhhccCC-cccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchH
Q 022246 204 AGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR 261 (300)
Q Consensus 204 ~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~ 261 (300)
.|++.+..++.....+.+..+ +++++...++.+....+|..++|.+.|.+.+...+|.
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 899998888887777776555 4567899999888888899999999999877534443
No 175
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.29 E-value=1.4e-10 Score=106.33 Aligned_cols=129 Identities=15% Similarity=0.136 Sum_probs=109.8
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH----hhhHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT----AQSVQTMIIGR 201 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 201 (300)
...++++.+|.+..+. ++......++..++.++.|++.||+|||+++..+.++.+++.++..+ ..+++.++...
T Consensus 278 ~p~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (485)
T TIGR00711 278 LPLYLQQVLGYTALQA--GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQ 355 (485)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 4446667789998888 89999999999999999999999999999999998888888777662 23556667778
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN 256 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 256 (300)
++.|++.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.++
T Consensus 356 ~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 356 FIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988878888888889999999999999999999999999998887653
No 176
>PRK10133 L-fucose transporter; Provisional
Probab=99.28 E-value=1.8e-10 Score=104.32 Aligned_cols=148 Identities=13% Similarity=0.003 Sum_probs=113.8
Q ss_pred hhhHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH
Q 022246 124 NGALEYL-AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202 (300)
Q Consensus 124 ~~~~~~~-~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (300)
.+..+++ ++.+|+++... ++....+.++..++.+++|++.||+|+|+++..+.++.++..++..+.++.. .+...+
T Consensus 279 ~~~~~~l~~~~~g~s~~~a--g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 355 (438)
T PRK10133 279 SYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALT 355 (438)
T ss_pred HHHHHHHhhhcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHH
Confidence 3344564 45789999888 9999999999999999999999999999999888877777666666655543 245667
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc-hHHHHHHhHHHHHHHHHH
Q 022246 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPSILLALG 277 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~ 277 (300)
+.|++.+..+|...+...+.++++ .+.+.++..+ ..+|+.++|.+.+.+.+. .| -+..|++..++.+..++.
T Consensus 356 l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~-~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDA-AGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998754 5777777764 445677777777777665 55 788888766655544444
No 177
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.28 E-value=1.7e-10 Score=103.37 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=112.7
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc-ccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-KFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd-~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 204 (300)
..|.+.++.+.++... +++.++..++..++..+.+++.| |++.++.+..+.++.+++.++.+..++++.+++..++.
T Consensus 230 ~~p~~~~~~~~~~~~~--g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 307 (400)
T PRK11646 230 MLPIMVNDIAGSPSAV--KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLF 307 (400)
T ss_pred hhhhhHHhhcCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4555555544455555 77777776666655555566555 57767777788888888887777888888777778888
Q ss_pred HHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC--c-hHHHHHHhHHHHHHHHHHhh
Q 022246 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL--W-WRTMFGLAAIPSILLALGMG 279 (300)
Q Consensus 205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~-w~~~f~~~~~~~~~~~~~~~ 279 (300)
+++.+...+....++.+..|+++||+++|+.+....+|..+||.++|.+.+... + ....+++.++++++..+...
T Consensus 308 ~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 308 YIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred HHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHH
Confidence 888888888889999999999999999999999999999999999999976521 2 34555555555555554433
No 178
>PRK09669 putative symporter YagG; Provisional
Probab=99.27 E-value=1.7e-10 Score=104.73 Aligned_cols=160 Identities=14% Similarity=0.111 Sum_probs=116.1
Q ss_pred hhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc----cCc-hHHHHHHhHHHHHHHHHHHHhhh----
Q 022246 123 VNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGR-TRTFQLDAVPLAAGAFLCATAQS---- 193 (300)
Q Consensus 123 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~----~Gr-r~~~~~~~~~~~~~~~~~~~~~~---- 193 (300)
..+...++.+++|++.... |.+..+..+..++..|+.|+++|| +|| |+.++.+.+..++..++....++
T Consensus 29 ~~~l~~~~t~~~gls~~~~--g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~ 106 (444)
T PRK09669 29 MLFLAYFYTDVFGLSAAIM--GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGAT 106 (444)
T ss_pred HHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 3446778899999999888 999999999999999999999998 777 45566676777776665554432
Q ss_pred --HHHHHHHHHHHHHhhhhhhhhhhhhhhccC-CcccchhhHHHHHHHHHHHHHHHHHhhhhcc----C--CCCchHHHH
Q 022246 194 --VQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPLA----G--NPLWWRTMF 264 (300)
Q Consensus 194 --~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~--~~~~w~~~f 264 (300)
...+++..++.+.+......+..++.+|+. ++++|.+..++...+..+|..+++.+...+. . ...+|+..+
T Consensus 107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~ 186 (444)
T PRK09669 107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAM 186 (444)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence 455566666777777777778889999988 5578998888877777777766655433221 1 125788888
Q ss_pred HHhHHHHHHHHHHh-hcCCCC
Q 022246 265 GLAAIPSILLALGM-GLSPES 284 (300)
Q Consensus 265 ~~~~~~~~~~~~~~-~~~pe~ 284 (300)
++.+++.+++.+.. +..+|.
T Consensus 187 ~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 187 MVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHHHHHHHHHhCCeEEe
Confidence 88888776655443 334543
No 179
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.26 E-value=5.4e-10 Score=99.82 Aligned_cols=145 Identities=15% Similarity=0.078 Sum_probs=111.9
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 205 (300)
..+++++.+|.++.+. |++.+...++..++.++.+++.||.++|+++..+. +.++..++.++.++++.+++..++.|
T Consensus 228 ~~~~~~~~lg~s~~~~--G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G 304 (393)
T PRK11195 228 VLAWAPVALGITLNQP--AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIG 304 (393)
T ss_pred HHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456777889998887 99999999999999999999999999998887775 34444555566677777777788899
Q ss_pred HhhhhhhhhhhhhhhccCCccc-chhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246 206 IGIGISSAIVPLYISEISPTEI-RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (300)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~ 275 (300)
++.+...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+.. .|-++.+++.++..++.+
T Consensus 305 ~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 373 (393)
T PRK11195 305 ALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK--LGVPVVAVIVGFGLLVAL 373 (393)
T ss_pred HhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHH
Confidence 9988888888888888766554 6999999999999999999998887744 444444444444333433
No 180
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.26 E-value=1.2e-10 Score=104.77 Aligned_cols=132 Identities=15% Similarity=-0.072 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH-h-----hhHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 022246 147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-A-----QSVQTMIIGRVLAGIGIGISSAIVPLYIS 220 (300)
Q Consensus 147 ~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~-~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~ 220 (300)
..+..+...++.+++|+|+||+|+|+++.++.++.+++.+.... . .+++.+++..+...++.|........++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 34455677888999999999999999999888877776543222 1 24555554444444444444455556666
Q ss_pred ccCCc---------------------ccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHh
Q 022246 221 EISPT---------------------EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM 278 (300)
Q Consensus 221 ~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 278 (300)
+.||. ++-|.+.|+......+|+++.|.+.+...+...++...|++..+..+++.++.
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 450 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLT 450 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 66663 14578899999999999988887766666554779999999888887776543
No 181
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.23 E-value=4.4e-10 Score=103.41 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=108.9
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh---hhHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQTMIIGRV 202 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 202 (300)
...+++..+|.+..+. +.....+.++..++.++.|++.||+|+|+++..+.++.+++.++.... ++.+...+..+
T Consensus 282 ~~~~lq~v~g~s~~~a--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (495)
T PRK14995 282 MAQELQFVHGLSPLEA--GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMA 359 (495)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 4557788899999888 899999999999999999999999999999988888887776655432 35556667788
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (300)
+.|++.|...+.....+.+..|+++++.+.++++....+|..+|+.+.+.+.
T Consensus 360 l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 360 LLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888889999999999999999999999999998888887764
No 182
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.22 E-value=5.8e-10 Score=99.46 Aligned_cols=122 Identities=15% Similarity=0.131 Sum_probs=82.3
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022246 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGI 206 (300)
Q Consensus 127 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 206 (300)
..++.+++|.+..+. +...+...++..++.++.+++.||+|||+++..+.++..++.++..+.++....+...++.++
T Consensus 227 ~~~~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (392)
T PRK10473 227 PVLLMEQMGFSRGEY--AIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICA 304 (392)
T ss_pred HHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667889988877 888888999999999999999999999999999988888888777776655544444444444
Q ss_pred hhhhhhhhhhhhhhccCCcccc-hhhHHHHHHHHHHHHHHHHHhhhh
Q 022246 207 GIGISSAIVPLYISEISPTEIR-GALGSVNQLFICVGILAALVAGLP 252 (300)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~ 252 (300)
+.+..++.. ...+..|.++| +.+.++..++..+|..+++.+.+.
T Consensus 305 g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~ 349 (392)
T PRK10473 305 GFSVGFGVA--MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAV 349 (392)
T ss_pred HHHHHhHHH--HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433332 33444454444 555555555555555555544443
No 183
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.22 E-value=9.5e-10 Score=96.05 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=128.6
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH
Q 022246 96 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175 (300)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~ 175 (300)
.+..+++|.++.+.++..+.+.+.+..+++...+....|| +.+.. -|...+|++.+....+++-|+.||+|-|..+.
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~--~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l 113 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA--DWLSMIYMVVSVPFGFAAMWILDKFGLRTALL 113 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH--HHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence 3567788999888888888888777777777788888888 44444 69999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhh------hHH--HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH
Q 022246 176 LDAVPLAAGAFLCATAQ------SVQ--TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (300)
Q Consensus 176 ~~~~~~~~~~~~~~~~~------~~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 247 (300)
++..+.+++..+-..+. .++ ..+.+..+.+..+-.....-.-+..-||++++|+.+..+-.++..+|.+++.
T Consensus 114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ 193 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF 193 (480)
T ss_pred HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence 99999999988766542 334 4455666666666555555556778899999999999999999999999999
Q ss_pred HhhhhccCC
Q 022246 248 VAGLPLAGN 256 (300)
Q Consensus 248 ~~~~~~~~~ 256 (300)
++...+..+
T Consensus 194 llppilV~~ 202 (480)
T KOG2563|consen 194 LLPPILVPS 202 (480)
T ss_pred hccceecCC
Confidence 988888754
No 184
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.22 E-value=1.5e-09 Score=96.79 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=121.0
Q ss_pred HHhhhhhHHHHHHHhC-CChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-hhHHHH
Q 022246 120 LGVVNGALEYLAKDLG-IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTM 197 (300)
Q Consensus 120 ~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l 197 (300)
...+..+.+.+.++.| .+.... +...++..+.-++.-.+.+++..|+|.|+++.++.+.+++=..+.+.. ++.+..
T Consensus 223 ~~~~~~f~~~yl~~~gg~~~~~~--g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~ 300 (400)
T PF03825_consen 223 HAAYYTFFSIYLQELGGYSGSTI--GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFI 300 (400)
T ss_pred HHHHHHHHHHHHHHcccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 3334445555566666 666655 666677777777888889999999999999999999988888888776 454443
Q ss_pred HHH----HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHH-HHHHHHHHHHHhhhhccCCC-----CchHHHHHHh
Q 022246 198 IIG----RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQL-FICVGILAALVAGLPLAGNP-----LWWRTMFGLA 267 (300)
Q Consensus 198 ~~~----~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~-----~~w~~~f~~~ 267 (300)
++. ..+.|+..+........++.+..|++.|+++.++++. ...+|..+|.+++|.+.+.. ..|...+.+.
T Consensus 301 ~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~ 380 (400)
T PF03825_consen 301 VALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVF 380 (400)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 333 3569999999999999999999999999999999776 46789999999999998751 2345556666
Q ss_pred HHHHHHHHH-HhhcCCCC
Q 022246 268 AIPSILLAL-GMGLSPES 284 (300)
Q Consensus 268 ~~~~~~~~~-~~~~~pe~ 284 (300)
+++.++..+ ++++.+|+
T Consensus 381 a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 381 AVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHHhhccCC
Confidence 665555444 33445554
No 185
>PRK09848 glucuronide transporter; Provisional
Probab=99.22 E-value=2.8e-10 Score=103.44 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=98.6
Q ss_pred hHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHH
Q 022246 126 ALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRV 202 (300)
Q Consensus 126 ~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 202 (300)
..+ ++++.+|.+.... ++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..+
T Consensus 250 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 327 (448)
T PRK09848 250 SSLFYVRYVLNDTGLFT--VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALA 327 (448)
T ss_pred hheeeEeeecCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 344 3444567654433 4444444667788899999999999999999999988888777666643 5666777788
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcc-------cchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246 203 LAGIGIGISSAIVPLYISEISPTE-------IRGALGSVNQLFICVGILAALVAGLPLA 254 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (300)
+.|+|.+...+...++.+|..+.+ .+|...++++....+|..+++.+.+.+.
T Consensus 328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988754 3489999999999999999988887764
No 186
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.21 E-value=1.5e-09 Score=96.18 Aligned_cols=125 Identities=10% Similarity=0.081 Sum_probs=88.1
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH---HHh-hhHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATA-QSVQTMIIGR 201 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~~ 201 (300)
...++.+.+|.++.+. ++..+...++..++.++.|++.||+|||+.+..+.++..+..+.. ... .+.+.+++..
T Consensus 217 ~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (377)
T PRK11102 217 GPFVYIELNGVSPQNF--GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGV 294 (377)
T ss_pred CHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4456677789998887 899999999999999999999999999999888876644433222 221 2344444444
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHH-HHHHHHHHHHhhhhc
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPL 253 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~ 253 (300)
.+.+.+.+........++.|..| +.++.+.++.+.. ..+|..+++++++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~ 346 (377)
T PRK11102 295 AAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAP 346 (377)
T ss_pred HHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444455555566667778776 7889999986654 456777888776543
No 187
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.21 E-value=6.7e-10 Score=101.65 Aligned_cols=159 Identities=12% Similarity=0.100 Sum_probs=113.9
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc----ccCc-hHHHHHHhHHHHHHHHHHHHhh------
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGR-TRTFQLDAVPLAAGAFLCATAQ------ 192 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd----~~Gr-r~~~~~~~~~~~~~~~~~~~~~------ 192 (300)
.+...++.+.+|++.... |.+..+.-+..++..|+.|+++| |+|| |+.++.+.+..+++.+++...+
T Consensus 27 ~~l~~yyt~v~Gls~~~v--g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~ 104 (473)
T PRK10429 27 MYLMYYYTDVVGLSVGLV--GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTA 104 (473)
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccH
Confidence 346667888889998888 99999999999999999999999 5698 6666677777777766654432
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhccC-CcccchhhHHHHHHHHHHHHHHHHHhhhhc----c--CCCCchHHHHH
Q 022246 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPL----A--GNPLWWRTMFG 265 (300)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~--~~~~~w~~~f~ 265 (300)
.+..+++..++.+++.........+++.|+. ++++|.+..++-..+..+|+.+.+.+...+ . +...+|++..+
T Consensus 105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 184 (473)
T PRK10429 105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTL 184 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence 1334555666778888888888899999999 588999988886666666654444333221 1 11246888877
Q ss_pred HhHHHHHHHHHH-hhcCCCC
Q 022246 266 LAAIPSILLALG-MGLSPES 284 (300)
Q Consensus 266 ~~~~~~~~~~~~-~~~~pe~ 284 (300)
+.+++.+++.+. ++..+|.
T Consensus 185 i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 185 VLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHHHHHHHHcCceec
Confidence 777776665443 3446765
No 188
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.20 E-value=5.7e-10 Score=98.20 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=90.4
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHH-HHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-----------hh
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----------QS 193 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~-i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-----------~~ 193 (300)
..+.+.+++|.+.++. +.+..+.. ++..++.+++|+++||+|||+.++.+.++.++...+..+. ++
T Consensus 231 ~~~~~l~~~g~~~~~~--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (356)
T TIGR00901 231 LTTLFLLDMGFSKEEI--ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH 308 (356)
T ss_pred HHHHHHHHcCCCHHHH--HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 3444444589988887 77776655 5678899999999999999999888888877766654442 34
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHH
Q 022246 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFIC 240 (300)
Q Consensus 194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 240 (300)
.+.++.+.++.+++.+...+...+++.|.+|+++||+.+|+.+....
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 56677788899999999999999999999999999999999876543
No 189
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.20 E-value=2e-10 Score=100.36 Aligned_cols=123 Identities=28% Similarity=0.350 Sum_probs=102.2
Q ss_pred hhhhHHH-HHHHhCCC-hhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh---hhHHHH
Q 022246 123 VNGALEY-LAKDLGIA-ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQTM 197 (300)
Q Consensus 123 ~~~~~~~-~~~~~~~s-~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l 197 (300)
.....|. +.+++|.+ ..+. ++..++..++..++.++.|+++||+|+|+..........+..+...+. .+....
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (352)
T PF07690_consen 225 FSFFLPLYLQEVLGFSGPSQA--GLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWL 302 (352)
T ss_dssp HHHHHHHHCCHHHHCCTHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHH
T ss_pred hhcccchhhhhccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3445554 48899998 5666 888999999999999999999999999888777776666666655443 345667
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH
Q 022246 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (300)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 247 (300)
++..++.|++.+...+....++.|.+|+++||++.|+.+....+|..++|
T Consensus 303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 77888899999999999999999999999999999999999999999987
No 190
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.19 E-value=4.7e-11 Score=104.16 Aligned_cols=186 Identities=15% Similarity=0.007 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHH------HHHHHH-HHHHHHHHHhhhhhhccccCchHHHHH
Q 022246 104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQ------GWIVSS-LLAGATVGSFTGGSLADKFGRTRTFQL 176 (300)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------~~~~~~-~~i~~~i~~~~~g~lsd~~Grr~~~~~ 176 (300)
..++..+..+|+........+.....+.+.+|..+.+... .....+ ...+++.|-.+...++|++|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 3455566666666666666666777888877776544310 111111 222333466677889999999999999
Q ss_pred HhHHHHHHHHHHHHhhh----HHHHHHHHHHHHH-hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhh
Q 022246 177 DAVPLAAGAFLCATAQS----VQTMIIGRVLAGI-GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL 251 (300)
Q Consensus 177 ~~~~~~~~~~~~~~~~~----~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 251 (300)
+++++++..+..+...| ...++++..+..+ +.-+.......+.+|.||.+.|++.-|+....+-+|++++.....
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 99999999998887655 2333333333332 333455667778899999999999999999999999999999888
Q ss_pred hccCC----CCchHHHHHHhHHHHHHHHHHhhcCCCChhHHH
Q 022246 252 PLAGN----PLWWRTMFGLAAIPSILLALGMGLSPESPRWLF 289 (300)
Q Consensus 252 ~~~~~----~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~ 289 (300)
.+.++ ..+.++.|++.+++.++..+..+++|||++...
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~l 505 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSL 505 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCH
Confidence 88771 268899999999999999999999999986544
No 191
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.17 E-value=7.7e-10 Score=99.96 Aligned_cols=130 Identities=25% Similarity=0.268 Sum_probs=108.3
Q ss_pred hhhhhHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hHHHHH
Q 022246 122 VVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMI 198 (300)
Q Consensus 122 ~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 198 (300)
..+...+++.++ +|.+ +.. ++...+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ +.+.++
T Consensus 243 ~~~~~~~y~~~~vl~~~-~~~--~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (428)
T PF13347_consen 243 LMNTFLPYYFTYVLGNE-GLI--SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVL 319 (428)
T ss_pred hhhhHHHHHHHHHhcCc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444455555444 5544 344 6788888999999999999999999999999999999999999888876 899999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhccCCcc-------cchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246 199 IGRVLAGIGIGISSAIVPLYISEISPTE-------IRGALGSVNQLFICVGILAALVAGLPLA 254 (300)
Q Consensus 199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (300)
+..++.|++.+..+....++++|..+.+ ..|...+.++....+|..+++.+.+.+.
T Consensus 320 i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 320 ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998742 2389999999999999998888887764
No 192
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.17 E-value=1.2e-09 Score=97.38 Aligned_cols=169 Identities=22% Similarity=0.195 Sum_probs=117.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC-chHHHHHHhHHHHHHHHHHHHh
Q 022246 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-RTRTFQLDAVPLAAGAFLCATA 191 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G-rr~~~~~~~~~~~~~~~~~~~~ 191 (300)
.++++...+.+.+..+.+.++.|++..++ |.+.++..+...++++++|+++||++ +|+++.+..++.++..+.....
T Consensus 11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~qI--G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~ 88 (400)
T PF03825_consen 11 YFLYFFAYGAFLPYLPLYLESRGFSGTQI--GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS 88 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445566677777888899999999 99999999999999999999999986 5677777777777777777788
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHh-hhhccCC--CCchHHHHHHhH
Q 022246 192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA-GLPLAGN--PLWWRTMFGLAA 268 (300)
Q Consensus 192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~~~~~--~~~w~~~f~~~~ 268 (300)
.+++.+++..++..+......|...++..+.... ++.-.|-.-..+.+|-+++.+. ++.+... ..+..+.+++.+
T Consensus 89 ~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 166 (400)
T PF03825_consen 89 SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAA 166 (400)
T ss_pred ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence 8899888888888888888888888888777652 3344444444444454444322 1111111 122345666666
Q ss_pred HHHHHHHHHhhcCCCCh
Q 022246 269 IPSILLALGMGLSPESP 285 (300)
Q Consensus 269 ~~~~~~~~~~~~~pe~~ 285 (300)
+..++.....+.+|++|
T Consensus 167 ~~~~ll~~~~l~lp~~~ 183 (400)
T PF03825_consen 167 ILSLLLAGFALFLPKTP 183 (400)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 66666666666778766
No 193
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.17 E-value=1.6e-10 Score=101.72 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 022246 143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222 (300)
Q Consensus 143 ~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 222 (300)
.|++.++..+.-++.-.+..++.+|+|.|+.++++.++.++=.++++++++.+.+.+.+.+.|+-.+.......-|+++.
T Consensus 261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~ 340 (412)
T PF01306_consen 261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH 340 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhHHH-HHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH-hhcCCCC
Q 022246 223 SPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG-MGLSPES 284 (300)
Q Consensus 223 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~-~~~~pe~ 284 (300)
+|++..++...+ ++....+|.++.+.++|.+.+. .|.+..|++.+.+.++..++ .+.+++.
T Consensus 341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~-~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR-IGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh-cCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 999988888877 5678889999999999999887 89999998888887665554 4445443
No 194
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.16 E-value=1.3e-13 Score=125.27 Aligned_cols=161 Identities=17% Similarity=0.090 Sum_probs=105.8
Q ss_pred hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH----HhhhH---
Q 022246 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA----TAQSV--- 194 (300)
Q Consensus 122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~----~~~~~--- 194 (300)
......+.+.+..+.+.. . .......+...++.+++.++.||+|||++++.+.++.+++.+..+ ...+.
T Consensus 271 ~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (451)
T PF00083_consen 271 FIFYYSPSIFENAGISNS-F---LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSW 346 (451)
T ss_pred cccccccccccccccccc-c---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344466777777887766 2 222333344556777788999999999999999888887777664 11111
Q ss_pred --HHHHHHHHHHH-HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc-hHHHHHHhHHH
Q 022246 195 --QTMIIGRVLAG-IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIP 270 (300)
Q Consensus 195 --~~l~~~~~l~G-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-w~~~f~~~~~~ 270 (300)
...+++-.+.. ....+..+..+.+..|.||++.|+++.++......++.++++.+...+.+. .+ +...+...++.
T Consensus 347 ~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-~~~~~~~~i~~~~~ 425 (451)
T PF00083_consen 347 WSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-LGGWGVFLIFAGVC 425 (451)
T ss_pred cccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccchhhHHHH
Confidence 11122222222 222244567778899999999999999999999999999888888777655 33 43333334444
Q ss_pred HHHHHHHhhcCCCChhH
Q 022246 271 SILLALGMGLSPESPRW 287 (300)
Q Consensus 271 ~~~~~~~~~~~pe~~~~ 287 (300)
.+...+.++++|||++.
T Consensus 426 ~i~~i~~~~~lpET~g~ 442 (451)
T PF00083_consen 426 LIAIIFVYFFLPETKGK 442 (451)
T ss_pred HHHHhheeEEEeeCCCC
Confidence 44445566779999753
No 195
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.16 E-value=2.2e-09 Score=91.85 Aligned_cols=154 Identities=21% Similarity=0.193 Sum_probs=106.7
Q ss_pred HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 022246 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGI 208 (300)
Q Consensus 129 ~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 208 (300)
.+-+++|+++.++ +.+.....+..++..++.|.++||+|||+..+...+++++.++ +-..+++..+++.|++.|++.
T Consensus 59 ~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaT 135 (354)
T PF05631_consen 59 ALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIAT 135 (354)
T ss_pred HHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHH
Confidence 3446899999998 7888888888899999999999999999999998888888885 445688999999999999999
Q ss_pred hhhhhhhhhhhh-cc----CCcccchhhHHHHH-HHHHHHHHHHHHhhhhccCC-CCchHHHHHHhHHHHHHHHHHhhc-
Q 022246 209 GISSAIVPLYIS-EI----SPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLALGMGL- 280 (300)
Q Consensus 209 ~~~~~~~~~~~~-~~----~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~-~~~w~~~f~~~~~~~~~~~~~~~~- 280 (300)
+..++.--+++. |. +|.+..+.-++... ..+.+-.+++.+++-.+.+. ..|-..+|....++.+++.+++..
T Consensus 136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~ 215 (354)
T PF05631_consen 136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKT 215 (354)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence 998888777553 33 23332233333222 22222233344444444332 234577888877777766665543
Q ss_pred CCCCh
Q 022246 281 SPESP 285 (300)
Q Consensus 281 ~pe~~ 285 (300)
.+|++
T Consensus 216 W~ENy 220 (354)
T PF05631_consen 216 WPENY 220 (354)
T ss_pred ccccC
Confidence 56654
No 196
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.16 E-value=4.1e-10 Score=101.75 Aligned_cols=158 Identities=22% Similarity=0.227 Sum_probs=122.9
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc----ccCchHHH-HHHhHHHHHHHHHHHHh-h-----
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTRTF-QLDAVPLAAGAFLCATA-Q----- 192 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd----~~Grr~~~-~~~~~~~~~~~~~~~~~-~----- 192 (300)
.+..+++.+.+|+++... +.+..+.-+..++..|+.|.++| |+|||+.+ +.+.++.+++.+++... +
T Consensus 22 ~~~~~f~~~~~gl~~~~~--g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~ 99 (428)
T PF13347_consen 22 SYLLYFYTDVLGLSPALA--GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSF 99 (428)
T ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhh
Confidence 357788889999999888 89999999999999999999999 89976654 46778888887777655 4
Q ss_pred --hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCC-cccchhhHHHHHHHHHHHHHHHHHhhhhccC----CC--CchHHH
Q 022246 193 --SVQTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAG----NP--LWWRTM 263 (300)
Q Consensus 193 --~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~--~~w~~~ 263 (300)
....+++..++..++.........++..|+.+ +++|.+..++-..+..+|.++...+.+.+.. .. .+|++.
T Consensus 100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~ 179 (428)
T PF13347_consen 100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM 179 (428)
T ss_pred hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH
Confidence 23345666777788888888999999999998 4789999999888888888655555555442 11 179999
Q ss_pred HHHhHHHHHHHHHH-hhcCCC
Q 022246 264 FGLAAIPSILLALG-MGLSPE 283 (300)
Q Consensus 264 f~~~~~~~~~~~~~-~~~~pe 283 (300)
.++.+++.++..++ .+..+|
T Consensus 180 ~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 180 ALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHhhhhhheeee
Confidence 99998888776554 455677
No 197
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=99.14 E-value=4.3e-09 Score=89.34 Aligned_cols=155 Identities=28% Similarity=0.439 Sum_probs=121.9
Q ss_pred HHHHhhhhhHHHHHHHhCCChh--hhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhh--
Q 022246 118 YHLGVVNGALEYLAKDLGIAEN--TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS-- 193 (300)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~-- 193 (300)
..........+.+..+++.+.. .. ++..+.+.++..++.++.|.++||+|||+.++.+.....++.+.+++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLY--GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVG 93 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccch
Confidence 4445555677777777776652 45 78999999999999999999999999998888887765666666666665
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCc-ccchhhHHHHHH-HHHHHHHHHHHhhhhccCC-CCchHHHHHHhHHH
Q 022246 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQL-FICVGILAALVAGLPLAGN-PLWWRTMFGLAAIP 270 (300)
Q Consensus 194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~w~~~f~~~~~~ 270 (300)
.+.+++.|++.|++.+...+....++.|.+|. ++|+...++... ...+|..+++++++.+... ..+||+.|++....
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL 173 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 88899999999999999999999999999998 678888888887 5777888888777665432 35799977777666
Q ss_pred HHHH
Q 022246 271 SILL 274 (300)
Q Consensus 271 ~~~~ 274 (300)
....
T Consensus 174 ~~~~ 177 (338)
T COG0477 174 GLLL 177 (338)
T ss_pred HHHH
Confidence 5433
No 198
>PRK11043 putative transporter; Provisional
Probab=99.13 E-value=8.2e-09 Score=92.36 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=96.4
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH---HH--hhhHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---AT--AQSVQTMIIG 200 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~---~~--~~~~~~l~~~ 200 (300)
..|.+.+++|.+..+. ++......++..++.++.+++.||+|+|+.+....++.+++.+.. .. .++.+.+++.
T Consensus 225 ~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (401)
T PRK11043 225 GSPFILEQMGYSPADI--GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP 302 (401)
T ss_pred HhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4555667789988777 777777888888999999999999999987665555444443322 22 2355555566
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN 256 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 256 (300)
..+.|++.+..++.......+..| ++||++.++++.....++.+++.+.+.+.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 677888888888888888888776 5799999999988887888888888777654
No 199
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.12 E-value=1.1e-09 Score=100.30 Aligned_cols=128 Identities=13% Similarity=0.035 Sum_probs=94.5
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH-----hhhHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-----AQSVQTMIIG 200 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~ 200 (300)
..+++.+...-+.+.. +++.++..++..++.+++++++||+|+|+.+.++.++.+++.+.... ..+.+.+++.
T Consensus 253 ~~~y~~~y~~~~~~~~--~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 330 (473)
T PRK10429 253 FAIYYFTYVIGDADLF--PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIA 330 (473)
T ss_pred heeeEEEEECCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 3444444433333333 56667777888899999999999999999998888776655544432 3456666677
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCC-----cccc--hhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 201 RVLAGIGIGISSAIVPLYISEISP-----TEIR--GALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~-----~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
-++.|++.+...+...++++|..+ ..+| |..+++......+|..+++.+.|.+.+
T Consensus 331 ~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 331 GILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999955 3333 778899999999999999888887653
No 200
>PRK09669 putative symporter YagG; Provisional
Probab=99.11 E-value=2.2e-09 Score=97.51 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT--AQSVQTMIIGRVLAGIGIGISSAIVPLYISE 221 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 221 (300)
+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+ ..+.+.+++..++.|++.+...+..+++++|
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556667777888899999999999999998887766654432222 3466677777889999999999999999999
Q ss_pred cCCcc-------cchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 222 ISPTE-------IRGALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 222 ~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
..+.+ ..|..++++.....+|..+++.+++.+.+
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88622 23677888888889999999998888754
No 201
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.07 E-value=2.3e-09 Score=96.90 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=111.6
Q ss_pred hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc--------hHHH-HHHhHHHHHHHHHHHHhh
Q 022246 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR--------TRTF-QLDAVPLAAGAFLCATAQ 192 (300)
Q Consensus 122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr--------r~~~-~~~~~~~~~~~~~~~~~~ 192 (300)
...+.+.|+.+.+|++..+. |+..++..+...+..+++|.++||.-+ ||++ .++....+++.+..++.+
T Consensus 277 l~~y~PtY~~~VL~f~v~~~--G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~ 354 (466)
T KOG2532|consen 277 LLTYLPTYLKEVLGFDVRET--GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS 354 (466)
T ss_pred HHHHhhHHHHHHhCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence 44556668888999999888 999999999999999999999998754 2332 345555666666666655
Q ss_pred h--H-HHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC--CCchHHHHHHh
Q 022246 193 S--V-QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN--PLWWRTMFGLA 267 (300)
Q Consensus 193 ~--~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~w~~~f~~~ 267 (300)
+ . ..++++-+..++ .|...+..+.-..|. -+++-+..+|+.+....+.++++|.+.+.+..+ ...|++.|++.
T Consensus 355 ~~~~~~a~~~l~~~~~~-~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~ 432 (466)
T KOG2532|consen 355 DEHRLLAVILLTIAIGL-SGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIA 432 (466)
T ss_pred CCcchHHHHHHHHHHHH-cccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHH
Confidence 2 2 122211111121 122222222233333 456679999999999999999999999999853 24799999999
Q ss_pred HHHHHHHHHHhhcC--CCChhHHH
Q 022246 268 AIPSILLALGMGLS--PESPRWLF 289 (300)
Q Consensus 268 ~~~~~~~~~~~~~~--pe~~~~~~ 289 (300)
+++.++..+++.++ -|..+|..
T Consensus 433 a~i~~~~~i~f~~f~s~e~~~w~~ 456 (466)
T KOG2532|consen 433 AGILIVGNIIFLFFGSGEPAPWTK 456 (466)
T ss_pred HHHHHHhchheeEeecCcccCccC
Confidence 99988877655554 34444544
No 202
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.07 E-value=2.7e-08 Score=84.89 Aligned_cols=176 Identities=17% Similarity=0.081 Sum_probs=134.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-CchHHHHH
Q 022246 98 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQL 176 (300)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-Grr~~~~~ 176 (300)
+.+..|.+...+.+..+.++ .....+|.+..|.|+|..++ |+..+...+......+....+.+|. .+|+..+.
T Consensus 206 ~~~~aW~vtLfmGlqS~~~Y----~~~~WLP~ili~~G~sa~~a--G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~ 279 (395)
T COG2807 206 RSPLAWQVTLFMGLQSLLYY----IVIGWLPAILIDRGLSAAEA--GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVL 279 (395)
T ss_pred cCchhHHHHHHHHhhHHHHH----HHHHHHHHHHHHcCCCHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 33445655555555555543 33347788888899999999 9999999999999999999999954 67888888
Q ss_pred HhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcc-cchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 177 DAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE-IRGALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
...++.++.+.+.+.+....++- .++.|+|.|+.++.....+.+-.... +-+.-.++.+....+=..+||.+.|++.|
T Consensus 280 ~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD 358 (395)
T COG2807 280 ALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD 358 (395)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence 88888888887777765433332 48999999999999999999887654 34666777777777777899999999988
Q ss_pred CCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 256 NPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 256 ~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
...+|+..++..+...+++.++-+.
T Consensus 359 a~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 359 ATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhh
Confidence 7789999988887777666554443
No 203
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.04 E-value=2.3e-08 Score=91.56 Aligned_cols=136 Identities=20% Similarity=0.123 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHhhhh----hhccc-cCchHHH--HHHhHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHh
Q 022246 144 GWIVSSLLAGATVGSFTGG----SLADK-FGRTRTF--QLDAVPLAAGAFLCAT---------AQSVQTMIIGRVLAGIG 207 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g----~lsd~-~Grr~~~--~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~ 207 (300)
+++.++..+...+.+++.. ++.+| .+.+... .+|+++.+++.+..++ ..+++++++..++.++|
T Consensus 315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g 394 (475)
T TIGR00924 315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG 394 (475)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence 5777777777777776644 45554 3333433 6788888888777664 45889999999999999
Q ss_pred hhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
.....|..+.++.+..|++.||+++|++.....+|..+++.+....... .+|.+.|...++..++..++.++
T Consensus 395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP-QGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888776554 67888888887777665554433
No 204
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.04 E-value=1.8e-08 Score=92.72 Aligned_cols=137 Identities=16% Similarity=0.093 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHhhh----hhhccccCchHHHHHHhHHHHHHHHHHHHhhh---------HHHHHHHHHHHHHhhhh
Q 022246 144 GWIVSSLLAGATVGSFTG----GSLADKFGRTRTFQLDAVPLAAGAFLCATAQS---------VQTMIIGRVLAGIGIGI 210 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~----g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~l~G~~~~~ 210 (300)
+++.++..+...+..++. +++.+|++..+.+.+|+++.+++.+..+...+ .++++...++.|+++..
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 455555555555555544 77777777778889999999999888776654 45788899999999999
Q ss_pred hhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc-----CC----CCchHHHHHHhHHHHHHHHHHhhc
Q 022246 211 SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-----GN----PLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~----~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
..|...+++.+..|++.||+++|.+.....+|..++..+..... .. ..++.+.|...++.++++.++.+.
T Consensus 399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888877766664221 11 124678888888777655443333
No 205
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.03 E-value=2.7e-09 Score=99.27 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHH
Q 022246 104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA 183 (300)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~ 183 (300)
..+.+.++..+...+..+.+...+..+.+.|+++..+. |++.+.+-++..+...+..++.-|.-|-+.+-.|.+++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s--G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS--GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL 174 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc--eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence 34455556666666666777889999999999999998 9999999999999999999999999888888899999999
Q ss_pred HHHHHHHh--------------------h-----------------------------h--HH-HHHHHHHHHHHhhhhh
Q 022246 184 GAFLCATA--------------------Q-----------------------------S--VQ-TMIIGRVLAGIGIGIS 211 (300)
Q Consensus 184 ~~~~~~~~--------------------~-----------------------------~--~~-~l~~~~~l~G~~~~~~ 211 (300)
+.+++++- + + ++ .++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 99888741 0 0 22 4566779999999999
Q ss_pred hhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC------------------CchHHHHHHhHHHHHH
Q 022246 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP------------------LWWRTMFGLAAIPSIL 273 (300)
Q Consensus 212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------------~~w~~~f~~~~~~~~~ 273 (300)
++....|+-|...+++-+..+|++.....+|.++|-+++++....+ .-|..-|++.+.+.++
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999998899999999999999999999998875311 1266677777888877
Q ss_pred HHHHhhcCCCChh
Q 022246 274 LALGMGLSPESPR 286 (300)
Q Consensus 274 ~~~~~~~~pe~~~ 286 (300)
..+.++++|++.+
T Consensus 335 ~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 335 SAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHhCcccCc
Confidence 7887788776543
No 206
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.01 E-value=2.3e-08 Score=89.85 Aligned_cols=143 Identities=9% Similarity=-0.083 Sum_probs=102.5
Q ss_pred hhhHHHHHHHh-CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH
Q 022246 124 NGALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202 (300)
Q Consensus 124 ~~~~~~~~~~~-~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (300)
++..++..+.. +.+.... +...+.+..+..+|.++++++.||+++|+++.++.++.++..++....++... +.+.+
T Consensus 253 s~l~~y~~~~~~~~~~~~a--~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~ 329 (410)
T TIGR00885 253 TFIIQYAVRLIPGMTAGFA--ANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLT 329 (410)
T ss_pred HHHHHHHhhccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHH
Confidence 33445554321 3333333 45566667888999999999999999999999988888888888877766544 45667
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC-----CchHHHHHHhHHHH
Q 022246 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-----LWWRTMFGLAAIPS 271 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~w~~~f~~~~~~~ 271 (300)
+.|++.+..+|.......+..+++.+..+.++.. + .+|+.+.|.+.|.+.+.. .+.+..|++..++-
T Consensus 330 ~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~ 401 (410)
T TIGR00885 330 LCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF 401 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence 7888889999999999999998765433333333 2 388898999999988741 25778887654443
No 207
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.96 E-value=1.1e-07 Score=84.86 Aligned_cols=128 Identities=17% Similarity=0.136 Sum_probs=94.8
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH-HHHHHHHH--hhhHHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA-AGAFLCAT--AQSVQTMIIGRV 202 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~-~~~~~~~~--~~~~~~l~~~~~ 202 (300)
...++.+.+|.+..+. ++......++..++.++.+++.||++++........+.+ +....... ..+.+.+++..+
T Consensus 230 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T PRK11652 230 SGVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAA 307 (394)
T ss_pred ChHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3345666689988777 888888888888999999999999984433322222222 22222222 235566777788
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN 256 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 256 (300)
+.|++.+...+....+..|.+| +++|.+.++.+....+|..+++.+++.+...
T Consensus 308 ~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 308 LFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999887 5789999999999999999999999887654
No 208
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.96 E-value=3.8e-09 Score=94.11 Aligned_cols=167 Identities=19% Similarity=0.165 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH
Q 022246 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (300)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~ 189 (300)
++..+..+.....+..++=.-.+|.+-.+.-. |....+-..+-++.-++.++|..|+|+-+++.+++++..+=.+...
T Consensus 377 f~~av~mG~g~~lv~tFLfWHled~~~~~~Lf--Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S 454 (618)
T KOG3762|consen 377 FFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLF--GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS 454 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCcceee--eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH
Confidence 33444445555555556666677777655555 7777777777788888999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHH-HHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246 190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (300)
Q Consensus 190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~ 268 (300)
+..|.|+.+..-+++|+..+..+..+.+|+++..||+.|+++.+++... ..+|--+|.++||.+... .|-|..|++.+
T Consensus 455 ~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~-fg~~ttf~~~g 533 (618)
T KOG3762|consen 455 YLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER-FGARTTFRIFG 533 (618)
T ss_pred HhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee-ehhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996654 567888999999999876 88899999998
Q ss_pred HHHHHHHHHhh
Q 022246 269 IPSILLALGMG 279 (300)
Q Consensus 269 ~~~~~~~~~~~ 279 (300)
+.+++..+...
T Consensus 534 iAcl~~l~~~~ 544 (618)
T KOG3762|consen 534 IACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHH
Confidence 88877655443
No 209
>PRK11462 putative transporter; Provisional
Probab=98.95 E-value=3.1e-08 Score=90.32 Aligned_cols=159 Identities=17% Similarity=0.133 Sum_probs=118.3
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc----cCchH-HHHHHhHHHHHHHHHHHHhhh-----
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTR-TFQLDAVPLAAGAFLCATAQS----- 193 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~----~Grr~-~~~~~~~~~~~~~~~~~~~~~----- 193 (300)
.+.+.++.+.+|++.... |.+..+.-+.-++.-|+.|.++|| +|||+ .++++.+..++..+++...++
T Consensus 30 ~~l~~fyt~~~Gl~~~~~--g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~ 107 (460)
T PRK11462 30 LYMMFFYTDIFGIPAGFV--GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNG 107 (460)
T ss_pred HHHHHHHHHhhCCCHHHH--HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcch
Confidence 346667888999998888 999999999999999999999996 68765 455676777777766655442
Q ss_pred -HHHHHHHHHHHHHhhhhhhhhhhhhhhccCC-cccchhhHHHHHHHHHHHHHHHHHhhhhccCC------CCchHHHHH
Q 022246 194 -VQTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAGN------PLWWRTMFG 265 (300)
Q Consensus 194 -~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~w~~~f~ 265 (300)
...+++...+..++......+..++.+|+.+ +++|.+..++...+..+|..+++.+...+... ..+|+....
T Consensus 108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~ 187 (460)
T PRK11462 108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIA 187 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence 3455666677788888888888899999997 68999999999988888877776664433211 136888877
Q ss_pred HhHHHHHHHHHHhh-cCCCC
Q 022246 266 LAAIPSILLALGMG-LSPES 284 (300)
Q Consensus 266 ~~~~~~~~~~~~~~-~~pe~ 284 (300)
+.+++.+++.++.+ ..+|.
T Consensus 188 i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 188 VLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHHHHHHHHhcceec
Confidence 77777666554433 34554
No 210
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.95 E-value=6.7e-09 Score=91.54 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=86.7
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH--hh--hHHHHHH
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT--AQ--SVQTMII 199 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~--~~--~~~~l~~ 199 (300)
.....++.+.+|.+..+. ++..++..++..++.+++|+++||+|||+.+..+..+.+.+..+..+ .. +...+++
T Consensus 246 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
T TIGR00886 246 SIFAMFFKDQFGLSKVTA--GAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV 323 (366)
T ss_pred HHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 345557777889988887 88888899999999999999999999998887776666665554443 22 5555555
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHH
Q 022246 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG 242 (300)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 242 (300)
..++.+++.|...+....++.+.+| +++|.+.|+++....+|
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 5555566666666677778888887 68999999988776654
No 211
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.93 E-value=2.1e-08 Score=90.46 Aligned_cols=175 Identities=21% Similarity=0.178 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHH----HHHHHHHHHhhhhhhccccCchHHHHHHhH
Q 022246 104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSS----LLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (300)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~----~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~ 179 (300)
.+....++..+..++..........+....++.+..... +..... ..+...+..+..|.++||+|||..+...++
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~ 100 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLEN-GLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF 100 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchh-hhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence 344444555555555555555566666666655433221 233333 356677888999999999999999999888
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC
Q 022246 180 PLAAGAFLCATAQSVQTMIIGRVLAGI--GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP 257 (300)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 257 (300)
...+..+...+.. +| +++ +.++ +.+..++...++++|....++|...+|+.......+..++|.+++.+...
T Consensus 101 ~~~l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~- 174 (463)
T KOG2816|consen 101 GTILPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF- 174 (463)
T ss_pred HHHHhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-
Confidence 8777776666655 33 333 3333 23456788889999999999999999999999999999999999998876
Q ss_pred CchHHHHHHhHHHHHHHHH-HhhcCCCCh
Q 022246 258 LWWRTMFGLAAIPSILLAL-GMGLSPESP 285 (300)
Q Consensus 258 ~~w~~~f~~~~~~~~~~~~-~~~~~pe~~ 285 (300)
.|.-..|.+..+..++..+ ..+++||+.
T Consensus 175 ~~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 175 LGIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred cCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 7888889988888877665 456678864
No 212
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.93 E-value=3.7e-08 Score=91.16 Aligned_cols=177 Identities=15% Similarity=0.035 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246 108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (300)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~ 187 (300)
.+.+..+..........++.+.+.+..|.+.+.. +...+..+...++..++..+.||+|||+.++.+.+.++++.++
T Consensus 299 ~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~---~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~ 375 (513)
T KOG0254|consen 299 GLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTF---LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVI 375 (513)
T ss_pred HHHHHHHHHHhCCceEEeehHHHHHhcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Confidence 3344444444555566677888888888875432 4455555666777788899999999999999999999999887
Q ss_pred HHHhhhH-------------HHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246 188 CATAQSV-------------QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (300)
Q Consensus 188 ~~~~~~~-------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (300)
++..... ..+...-++......+..++.+.+.+|.+|.+.|+++.++......+...+-........
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~ 455 (513)
T KOG0254|consen 376 LAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFIT 455 (513)
T ss_pred HHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7754211 122222233333334445677788999999999999999977777666544333322222
Q ss_pred CCCCchHHHHHHhHHHHHH-HH-HHhhcCCCChhHH
Q 022246 255 GNPLWWRTMFGLAAIPSIL-LA-LGMGLSPESPRWL 288 (300)
Q Consensus 255 ~~~~~w~~~f~~~~~~~~~-~~-~~~~~~pe~~~~~ 288 (300)
.. .++...|.+.+..+.+ .. .+++++|||+...
T Consensus 456 ~~-~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s 490 (513)
T KOG0254|consen 456 EA-LGIGGTFGYFGGICLLSLIIFVFFFVPETKGLT 490 (513)
T ss_pred Hh-ccccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence 22 2234445444444433 44 4667789997543
No 213
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.90 E-value=4.2e-08 Score=92.36 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=119.6
Q ss_pred hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc-cCchHHHHHHhHHHHHHHHHHHHhhh--------H
Q 022246 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQS--------V 194 (300)
Q Consensus 124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~ 194 (300)
..+..++.+.+|.+.+.+ ..+...+....-+.++++|+++|+ +||++.+.++.++..++.++.++... .
T Consensus 8 aiLvlYl~~~lg~~~~~A--~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~ 85 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTS--TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD 85 (654)
T ss_pred HHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence 345667777889988777 556666666666778899999995 79999999999999999887776421 2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhccCCccc---chhhHHHHHHHHHHHHHHHHHhhhhccCC------CCchHHHHH
Q 022246 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEI---RGALGSVNQLFICVGILAALVAGLPLAGN------PLWWRTMFG 265 (300)
Q Consensus 195 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~w~~~f~ 265 (300)
...+++.++.++|.|+.-+...+...|.+++++ |-..+.+++.+.++|+++++++.+.+... ..+|...|.
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~ 165 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG 165 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence 335566778888999999999999999997643 56788888999999999998888887632 246999999
Q ss_pred HhHHHHHHHHHHhh
Q 022246 266 LAAIPSILLALGMG 279 (300)
Q Consensus 266 ~~~~~~~~~~~~~~ 279 (300)
+.+++.++.+++..
T Consensus 166 i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 166 VPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877665443
No 214
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.88 E-value=2e-08 Score=88.70 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=93.9
Q ss_pred HHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHH--HH-HHHHHh----
Q 022246 120 LGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA--GA-FLCATA---- 191 (300)
Q Consensus 120 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~--~~-~~~~~~---- 191 (300)
.++..++.+ .+.++.|++.++. |.+.++..+...+.+++.|.++||+|.||-++....+..+ +. +...+.
T Consensus 23 ~gi~~pF~~iWL~~~~GLs~~~i--G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~ 100 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLSGTEI--GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ 100 (412)
T ss_dssp HHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCHHHH--HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445444 5666799999999 9999999999999999999999999977765543322221 22 121222
Q ss_pred hhH-HHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHH
Q 022246 192 QSV-QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP 270 (300)
Q Consensus 192 ~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~ 270 (300)
.|. ...++.-.+.|+...+..++.-+++-++. +..+.-.|-.-+.+.+|.+++..++|.+.+ .+-...||+..+.
T Consensus 101 ~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~--i~p~~~fwi~s~~ 176 (412)
T PF01306_consen 101 SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN--INPNIIFWIASAA 176 (412)
T ss_dssp TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee--eCccHHHHHHHHH
Confidence 232 22233333344444444445444444432 223566666777888888888889988864 4567888887776
Q ss_pred HHHHHHHhhcC
Q 022246 271 SILLALGMGLS 281 (300)
Q Consensus 271 ~~~~~~~~~~~ 281 (300)
+++..++.++.
T Consensus 177 ~~il~lll~~~ 187 (412)
T PF01306_consen 177 AIILLLLLLLL 187 (412)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHHc
Confidence 66555544443
No 215
>PRK09848 glucuronide transporter; Provisional
Probab=98.87 E-value=1.6e-07 Score=85.35 Aligned_cols=127 Identities=15% Similarity=0.219 Sum_probs=86.8
Q ss_pred hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc----CchHHH-HHHhHHHHHHHHHHH-H----hh--
Q 022246 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF----GRTRTF-QLDAVPLAAGAFLCA-T----AQ-- 192 (300)
Q Consensus 125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~----Grr~~~-~~~~~~~~~~~~~~~-~----~~-- 192 (300)
+...++++.+|++..+. |.+.++..+..++..+++|+++||. |||+.+ ..+.+...+..++.. . ..
T Consensus 30 ~l~~y~~~~~gl~~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (448)
T PRK09848 30 FLLSYYTDVAGVGAAAA--GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSS 107 (448)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcch
Confidence 35568888899998888 9999999999999999999999996 766644 455554444433322 1 11
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCc-ccchhhHHHHHHH-----HHHHHHHHHHhhhhc
Q 022246 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLF-----ICVGILAALVAGLPL 253 (300)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~-----~~~g~~~~~~~~~~~ 253 (300)
....+++..++.+++.+...+...++..++... ++|....++-..+ ..++..++|++++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 108 KVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 223344555677888888887777777776654 6788776665433 334556677766543
No 216
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.86 E-value=3.3e-10 Score=104.38 Aligned_cols=175 Identities=20% Similarity=0.216 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246 108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (300)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~ 187 (300)
..++..+.+.+..+.....++.+++.|+++..+. |++.+.+-++..+..++..++.+|..|-+.+-.|.++.+++.++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~--G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l 84 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS--GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL 84 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence 3344444445666677778899999999999999 99999999999999999999999988888888899999999887
Q ss_pred HHHhh--------------------------------------------------hHHHHHHHHHHHHHhhhhhhhhhhh
Q 022246 188 CATAQ--------------------------------------------------SVQTMIIGRVLAGIGIGISSAIVPL 217 (300)
Q Consensus 188 ~~~~~--------------------------------------------------~~~~l~~~~~l~G~~~~~~~~~~~~ 217 (300)
+++-+ -+..++++.++.|+|....+++..+
T Consensus 85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t 164 (539)
T PF03137_consen 85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT 164 (539)
T ss_dssp -------------------------------------------------------------------SSS----------
T ss_pred HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence 76310 0244677889999999999999999
Q ss_pred hhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC---------------------CchHHHHHHhHHHHHHHHH
Q 022246 218 YISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP---------------------LWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 218 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------------------~~w~~~f~~~~~~~~~~~~ 276 (300)
|+-|..+++.-+..+|++.....+|.++|-++++.+...+ ..|-.-|++.+++.++..+
T Consensus 165 YiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai 244 (539)
T PF03137_consen 165 YIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI 244 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998775310 1154556666666666666
Q ss_pred HhhcCCCC
Q 022246 277 GMGLSPES 284 (300)
Q Consensus 277 ~~~~~pe~ 284 (300)
.++++|+.
T Consensus 245 pl~~FPk~ 252 (539)
T PF03137_consen 245 PLFFFPKK 252 (539)
T ss_dssp --------
T ss_pred HHHcCCcc
Confidence 66666653
No 217
>PRK11462 putative transporter; Provisional
Probab=98.84 E-value=2.6e-07 Score=84.27 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIGISSAIVPLYISE 221 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 221 (300)
+.+...+.++.+++.+++++++||+|+|+++..+.++.++..++..+.+ +...+++.-++.|++.+...+..+++++|
T Consensus 266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad 345 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD 345 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888899999999999999999987755554444333333322 23334445566788777777777777777
Q ss_pred cCCc-----ccc--hhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246 222 ISPT-----EIR--GALGSVNQLFICVGILAALVAGLPLA 254 (300)
Q Consensus 222 ~~~~-----~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (300)
..+- .+| |..++.......+|..+++.+++.+.
T Consensus 346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL 385 (460)
T PRK11462 346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML 385 (460)
T ss_pred hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7652 234 55556666777778877777776654
No 218
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.83 E-value=1.8e-07 Score=85.86 Aligned_cols=137 Identities=17% Similarity=0.090 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHH-------HHHHhHHHHHHHHHHH-----Hh-----hhHHHHHHHHHHHHH
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRT-------FQLDAVPLAAGAFLCA-----TA-----QSVQTMIIGRVLAGI 206 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~-------~~~~~~~~~~~~~~~~-----~~-----~~~~~l~~~~~l~G~ 206 (300)
.++.++..+...+..++.+++.||+|+|+. +.+|+++.+++.+..+ +. .+.++++...++.|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 455666666677788889999999999973 6677777666654321 11 356778888899999
Q ss_pred hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC---------CCchHHHHHHhHHHHHHHHHH
Q 022246 207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN---------PLWWRTMFGLAAIPSILLALG 277 (300)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~w~~~f~~~~~~~~~~~~~ 277 (300)
|.+...++...++.+..|++.+|.++|++.....+|..++..++...... ...+.+.|...++..+++.++
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~ 471 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV 471 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988887654210 013567787777777665554
Q ss_pred hhc
Q 022246 278 MGL 280 (300)
Q Consensus 278 ~~~ 280 (300)
.++
T Consensus 472 ~~~ 474 (489)
T PRK10207 472 MAL 474 (489)
T ss_pred HHH
Confidence 444
No 219
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.83 E-value=6.9e-08 Score=86.27 Aligned_cols=120 Identities=21% Similarity=0.282 Sum_probs=95.5
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhhhhh
Q 022246 135 GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIGISS 212 (300)
Q Consensus 135 ~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~ 212 (300)
+++..+....+.......+.+++.+++.+|.+|+|+|+++..+.++++++.++..+.+ +.+.++++.++.+++.+...
T Consensus 266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~ 345 (467)
T COG2211 266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIAN 345 (467)
T ss_pred EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccc
Confidence 3443443335667777777777799999999999999999999999999998888765 67788888899999999999
Q ss_pred hhhhhhhhccCCc-----ccc--hhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246 213 AIVPLYISEISPT-----EIR--GALGSVNQLFICVGILAALVAGLPLA 254 (300)
Q Consensus 213 ~~~~~~~~~~~~~-----~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (300)
+..+++++|...- .+| |...+.+....-+|..++..+.+++.
T Consensus 346 ~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 346 PLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred cccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887643 233 78888888888888877776666654
No 220
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.80 E-value=1.3e-08 Score=92.87 Aligned_cols=123 Identities=9% Similarity=0.038 Sum_probs=104.6
Q ss_pred HHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH----------hhhHHHHHHHH
Q 022246 132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT----------AQSVQTMIIGR 201 (300)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~ 201 (300)
..+|.++... |.+.....++..++..+.+++.+|++.|+++.++.++.+++.+.... .++.+.++...
T Consensus 281 ~~lG~s~~~~--G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 281 QCLPGGPSFS--GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred ccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 5689998888 89999999999999999999999999999999999988887754321 13333445556
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN 256 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 256 (300)
++.+++.+..+.+...++.+..|++.+|+..++..+...+|..+++.+++.+.+.
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999999999999999999999999999999999998888653
No 221
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.80 E-value=2.6e-07 Score=82.62 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=122.8
Q ss_pred hhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc----cCch-HHHHHHhHHHHHHHHHHHHhhh----
Q 022246 123 VNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRT-RTFQLDAVPLAAGAFLCATAQS---- 193 (300)
Q Consensus 123 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~----~Grr-~~~~~~~~~~~~~~~~~~~~~~---- 193 (300)
..+.+-++.+.+|++...+ |.+..+.=+.-++.-|+.|.++|| +||+ |.++.+.+.+++..+++..+++
T Consensus 32 ~~yLl~fYTdv~Gis~~~a--G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~ 109 (467)
T COG2211 32 VLYLLFFYTDVFGLSAALA--GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMT 109 (467)
T ss_pred HHHHHHHHhcccCCcHHHH--HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccC
Confidence 3446667888999998888 888888888899999999999995 6754 5566777888888888887763
Q ss_pred --HHHHHHHHHHHHHhhhhhhhhhhhhhhccCC-cccchhhHHHHHHHHHHHHHHHHHhhhhc----cCC--CCchHHHH
Q 022246 194 --VQTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPL----AGN--PLWWRTMF 264 (300)
Q Consensus 194 --~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~~~--~~~w~~~f 264 (300)
....++...+.+++......+..++.+|+.+ ++||....++-..+..+|.++..++...+ ... ..||+...
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~ 189 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTA 189 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 4556677889999999999999999999985 58899999998888888755444333332 222 45899888
Q ss_pred HHhHHHHHHHHHHhhc-CCCCh
Q 022246 265 GLAAIPSILLALGMGL-SPESP 285 (300)
Q Consensus 265 ~~~~~~~~~~~~~~~~-~pe~~ 285 (300)
++.+++.++..++.++ .+|.+
T Consensus 190 ~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 190 LVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 8888888777665554 56654
No 222
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.76 E-value=3.3e-07 Score=79.48 Aligned_cols=148 Identities=17% Similarity=0.124 Sum_probs=111.7
Q ss_pred HHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHH
Q 022246 120 LGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMI 198 (300)
Q Consensus 120 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (300)
......+++ ++.+..|+++.+. ....+.+..+..+|.+++.++..|+...|++.+..++..+.++..++.++...++
T Consensus 252 Eva~gsfl~~y~~~~~g~~~~~a--a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~ 329 (422)
T COG0738 252 EVAIGSFLVSYLEELLGLNEQQA--AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY 329 (422)
T ss_pred HHHHHHHHHHHHHhcCCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 334444444 5555588888888 8999999999999999999999999999999999888888888888888865554
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH
Q 022246 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (300)
Q Consensus 199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~ 273 (300)
.-++.|++.+..+|...+...+..+ ++-..+.++ .....+|+.+-|.+-|++.+. .+-...+.....++.+
T Consensus 330 -~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~-l~maivGGAiiP~l~G~i~d~-~g~~~~~~~~pllc~l 400 (422)
T COG0738 330 -ALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGL-LVMAIVGGAIIPPLQGVIADM-FGIQLTFLIVPLLCYL 400 (422)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHhccC-cccccccee-eeeheecchHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 4567889999999999999999998 433344343 344456777777788888776 6666666644444433
No 223
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=3.2e-08 Score=85.35 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=119.2
Q ss_pred hhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC--chHHHHHHhHHHHHHHHHHHHhhhHHHHH
Q 022246 122 VVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFLCATAQSVQTMI 198 (300)
Q Consensus 122 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (300)
..-+.++ ...|.+..+..+. |...--..+.+.++..+.|.++||++ |-.....+++..++.+....+++++.+++
T Consensus 288 fLePtlslwm~e~m~~p~w~~--G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~ 365 (464)
T KOG3764|consen 288 FLEPTLSLWMLETMFTPGWEV--GLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLW 365 (464)
T ss_pred HhCcccHHHHHHhccCCCcce--eeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHh
Confidence 3344444 3667777444455 66666677889999999999999999 64444556777777777888899999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhccCCcc------cchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246 199 IGRVLAGIGIGISSAIVPLYISEISPTE------IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (300)
Q Consensus 199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 272 (300)
+-++..+++.+...+.......++...+ .-|...++...+..+|.++||.++|.+.+. .|++|...+.++..+
T Consensus 366 vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~-iGF~wl~~iig~~n~ 444 (464)
T KOG3764|consen 366 VPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA-IGFEWLMTIIGILNL 444 (464)
T ss_pred hhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee-hhHHHHHHHHHHHHH
Confidence 9999999988887777776666666443 337888889999999999999999999877 899999988888877
Q ss_pred HHHHHhh
Q 022246 273 LLALGMG 279 (300)
Q Consensus 273 ~~~~~~~ 279 (300)
+..-+.+
T Consensus 445 iyapvl~ 451 (464)
T KOG3764|consen 445 IYAPVLL 451 (464)
T ss_pred HHHHHHH
Confidence 7654433
No 224
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.74 E-value=1.8e-07 Score=84.45 Aligned_cols=153 Identities=20% Similarity=0.182 Sum_probs=117.1
Q ss_pred hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-----CchHHHHHHhHHHHHHHHHHHHhh----hHH
Q 022246 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRTFQLDAVPLAAGAFLCATAQ----SVQ 195 (300)
Q Consensus 125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-----Grr~~~~~~~~~~~~~~~~~~~~~----~~~ 195 (300)
...+++.+++|+++.+. ....++..+--. ..+++|.++|-+ .||+-++++.++.+++.+.++..+ +..
T Consensus 11 ~~~~~l~~~l~ls~~~~--~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQL--QRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 36678999999999887 666666665544 478899999976 366666777777766555555433 456
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhccCCc--ccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH
Q 022246 196 TMIIGRVLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (300)
Q Consensus 196 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~ 273 (300)
...++.++..+|......+.-+++.|.... +.||...+.......+|.+++..++|.+.+. .++++.|.+.+++.++
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~-~~~~~~f~i~~~~~~l 166 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS-FGPQGVFLISAALPLL 166 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCeEEehHHHHHHHH
Confidence 666777888899999999999999998843 3367888888888999999999999998876 7899999998888777
Q ss_pred HHHHhhcC
Q 022246 274 LALGMGLS 281 (300)
Q Consensus 274 ~~~~~~~~ 281 (300)
..+..+++
T Consensus 167 ~~~~~~~~ 174 (433)
T PF03092_consen 167 MLIVALFL 174 (433)
T ss_pred HHHHHHHh
Confidence 66554444
No 225
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.73 E-value=1.7e-09 Score=89.12 Aligned_cols=153 Identities=17% Similarity=0.074 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc-cCchHHHHHHhH
Q 022246 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAV 179 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~~~~ 179 (300)
++...+..+|+..|..++.+-.......+...+.+++.++. .++-++|..-.++-++++|++.|| +|-|+.-++-..
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf--tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~ 118 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF--TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCI 118 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee--eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHH
Confidence 44556666677677666665555555666777777777666 677888888888899999999996 688876666555
Q ss_pred HHHHHHHHHH---HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 180 PLAAGAFLCA---TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 180 ~~~~~~~~~~---~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
...++.++++ ..+.+|.+++.||+.|+|.-..-..-+.+...+|..+|.+.++|+......+|..+--.+.+++.+
T Consensus 119 fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~ 197 (459)
T KOG4686|consen 119 FVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD 197 (459)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence 5666665554 468899999999999998766666677899999999999999999999999998766655555543
No 226
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.71 E-value=1.2e-06 Score=76.52 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=122.2
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc-ccCchHHHHHHhHHHHHHHHHHH---HhhhHHHHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-KFGRTRTFQLDAVPLAAGAFLCA---TAQSVQTMIIGR 201 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd-~~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~ 201 (300)
.-||=.+.||++..+. ..++.....|..+|-...|++.. |.++++.-..++.+.+++..+.. ...+.+.+...-
T Consensus 231 LEPygg~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~ 308 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGV 308 (403)
T ss_pred cCCchhHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 5577888899999888 78899999999999988888776 67777777777777666655443 345778888889
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC---------CCCchHHHHHHhHHHHH
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---------NPLWWRTMFGLAAIPSI 272 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~w~~~f~~~~~~~~ 272 (300)
++.|++.|.+.....+.+.|+..+++.|..+|.+...+.++..++.++++.+.+ ...+|...|.+.+++.+
T Consensus 309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~ 388 (403)
T PF03209_consen 309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL 388 (403)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 999999999988889999999999989999999999999999999988888754 12467788888877766
Q ss_pred HHHHHh
Q 022246 273 LLALGM 278 (300)
Q Consensus 273 ~~~~~~ 278 (300)
+++++.
T Consensus 389 ~a~~ll 394 (403)
T PF03209_consen 389 AALVLL 394 (403)
T ss_pred HHHHHH
Confidence 665543
No 227
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.71 E-value=5.5e-07 Score=81.78 Aligned_cols=142 Identities=16% Similarity=0.047 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCc-hHHHHHHhHHHHHHHHHHHHhhh---------------------HHHHHHHH
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPLAAGAFLCATAQS---------------------VQTMIIGR 201 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Gr-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~ 201 (300)
.+....+.+...+..++..++.+++|+ |.+..++.++.+++.+...+..+ .+..++..
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 355556666666777788889999995 77778898888888777765443 36677888
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcc--cchhhHHHHHHHHHHHHHHHHHhhhhccCC-CCchHHHHHHhHHHHHHHHHHh
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTE--IRGALGSVNQLFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLALGM 278 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~w~~~f~~~~~~~~~~~~~~ 278 (300)
.+.|+..+..+.+-++++++..+++ ..|..+|+++.+..+.+++..+..|.+... ..+-.+.+.+.++..++.+++.
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999954 449999999999999999888777774332 2345678888888888876654
Q ss_pred -hcCCCCh
Q 022246 279 -GLSPESP 285 (300)
Q Consensus 279 -~~~pe~~ 285 (300)
+.+|+++
T Consensus 468 ~~~~~~~~ 475 (477)
T TIGR01301 468 LILLPRPR 475 (477)
T ss_pred HHhCCCCC
Confidence 4567764
No 228
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.65 E-value=4.2e-06 Score=75.36 Aligned_cols=141 Identities=15% Similarity=0.082 Sum_probs=87.2
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhc-cccCchHHHHHHhHHHHHHHHHHH-----HhhhHHHHHHH
Q 022246 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA-DKFGRTRTFQLDAVPLAAGAFLCA-----TAQSVQTMIIG 200 (300)
Q Consensus 127 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~ls-d~~Grr~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~ 200 (300)
+.++++.+|.+..+. ++.......+..++..+.+.+. |+.++|. +.....+..++.++.. ..+++..+++.
T Consensus 242 P~~l~~~~g~s~~~~--gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 318 (413)
T PRK15403 242 PVILIDAGGMTTSQF--AWTQVPVFGAVIVANAIVARFVKDPTEPRF-IWRAVPIQLVGLALLIVGNLLWPHVWLWSVLG 318 (413)
T ss_pred hHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCchhH-HHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence 345666779998888 8887777778888878777765 4444443 3222222222222211 12334345667
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH
Q 022246 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~ 273 (300)
.++.++|.+...+......-.. ....+|++.++.+.....+..+++.+++++... +=++.|...+.+..+
T Consensus 319 ~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 319 TSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN--GGRLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHH
Confidence 7888888888777776433221 223479999999888888888888888887553 335555555544433
No 229
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.63 E-value=2e-06 Score=75.85 Aligned_cols=177 Identities=16% Similarity=0.056 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH
Q 022246 107 GVACLGAILFGYHLGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (300)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~ 185 (300)
..+|+..|+-.+ ...-.+..|++.+. .|++.++.. .-+.-+..-.+....++...++|.+|.|++++++.+...+..
T Consensus 8 ~llc~~gf~~~f-rPsEPfl~~yL~~~~kn~T~~qv~-~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~ 85 (412)
T PF01770_consen 8 LLLCLFGFFKEF-RPSEPFLTPYLTGPDKNFTEEQVN-NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITW 85 (412)
T ss_pred HHHHHHHHHHhc-CCCCccchHHHcCCccCCCHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344444444333 22333466777775 788887763 344444445566777889999999999999999999988888
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC-CCCchHHHH
Q 022246 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG-NPLWWRTMF 264 (300)
Q Consensus 186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~w~~~f 264 (300)
++.-+.++...+-+..++.|++.+. ..+.++++--..++++-.++.++......+|.+++.++|-.+.. ...+++...
T Consensus 86 ~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~ 164 (412)
T PF01770_consen 86 LLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLN 164 (412)
T ss_pred HHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 8888999999999999999998765 67777888888888887899999888888888888888877765 236678887
Q ss_pred HHhHHHHHHHHHHhhcCCCChh
Q 022246 265 GLAAIPSILLALGMGLSPESPR 286 (300)
Q Consensus 265 ~~~~~~~~~~~~~~~~~pe~~~ 286 (300)
++......+.++..+++|..++
T Consensus 165 ~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 165 YISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHHcCCCCc
Confidence 7777766667777777776543
No 230
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.62 E-value=2.2e-06 Score=65.67 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCC
Q 022246 145 WIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISP 224 (300)
Q Consensus 145 ~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~ 224 (300)
...++......+++++.+.+.+++|.|+.++++.+++.+..... +-++.+.++..-++.|++.+..+.....++.+...
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 34555666677888889999999999999999999988666554 45677888899999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246 225 TEIRGALGSVNQLFICVGILAALVAGLPL 253 (300)
Q Consensus 225 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 253 (300)
++.|++..+++......+.++|.++...+
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888887766554
No 231
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.60 E-value=1.4e-06 Score=80.86 Aligned_cols=154 Identities=21% Similarity=0.143 Sum_probs=108.4
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHH---HHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT---MIIGRV 202 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~ 202 (300)
.+......+|.+.. ............+....+.+.|++|||+....+.++..++.++.++...... ..+...
T Consensus 340 gl~~~~~~lg~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (521)
T KOG0255|consen 340 GLSLNVSGLGGNIY-----LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPL 414 (521)
T ss_pred hhhhhhhhcCchHH-----HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 45555555664432 2333333345555666689999999999999999999999999888765433 455556
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHH-HHHhhcC
Q 022246 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL-ALGMGLS 281 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~ 281 (300)
+..++.+..+.....+.+|++|+..|+.+.+.......+|.+++|.+..........+.... .+.+..+. .+..+++
T Consensus 415 ~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~l 492 (521)
T KOG0255|consen 415 LGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL--FGWLALLLGLLSLLLL 492 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH--HHHHHHHHHHHHHhcC
Confidence 66666777777789999999999999999999999999999999998865543212222222 34444444 4455788
Q ss_pred CCChh
Q 022246 282 PESPR 286 (300)
Q Consensus 282 pe~~~ 286 (300)
||+..
T Consensus 493 pet~~ 497 (521)
T KOG0255|consen 493 PETKG 497 (521)
T ss_pred cccCC
Confidence 98753
No 232
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.56 E-value=6.3e-07 Score=60.68 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=71.7
Q ss_pred HHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHH
Q 022246 117 GYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT 196 (300)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (300)
++....+.+.+|.++++.++|.++. +|+.+...+|+.+|.+...++.++..+++.+..+.+...+..+.+++..+++.
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~a--g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~ 82 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQA--GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL 82 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 4556677889999999999999999 99999999999999999999999988899999999999999999999887765
Q ss_pred H
Q 022246 197 M 197 (300)
Q Consensus 197 l 197 (300)
+
T Consensus 83 w 83 (85)
T PF06779_consen 83 W 83 (85)
T ss_pred H
Confidence 4
No 233
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.56 E-value=3.6e-06 Score=78.01 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=115.4
Q ss_pred hHHHHHHHhCCChh---hhHHHHHHHHHHHHHHHHHhhhhhhccccCchH-HHHHHhHHHHHHHHHHHHh--hhHHHHHH
Q 022246 126 ALEYLAKDLGIAEN---TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR-TFQLDAVPLAAGAFLCATA--QSVQTMII 199 (300)
Q Consensus 126 ~~~~~~~~~~~s~~---~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~-~~~~~~~~~~~~~~~~~~~--~~~~~l~~ 199 (300)
++..+..-|+-+.. .. ++....+.++..+|.++.|.+.-+++|-| .++++.+++.+++.+++.. .|....+.
T Consensus 333 ~p~~~~~vf~~d~~~~~~~--~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~ 410 (599)
T PF06609_consen 333 WPQQVVNVFGSDPISITEI--GWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIA 410 (599)
T ss_pred HHHHHhhhccCCCccccee--ehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHH
Confidence 44445555655442 34 67888888889999999999998887644 4556766666554444432 35555667
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC----------------------
Q 022246 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP---------------------- 257 (300)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------------------- 257 (300)
.-++.|++.|+...+....+.-..|.+.-|++.++....-.+|+.+|.-+...+..+.
T Consensus 411 ~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~s 490 (599)
T PF06609_consen 411 FLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESS 490 (599)
T ss_pred HHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhh
Confidence 7889999999888888877777888888899999998888888877766554332100
Q ss_pred ---------------------------------------CchHHHHHHhHHHHHHHHHHhhcCCCChhH
Q 022246 258 ---------------------------------------LWWRTMFGLAAIPSILLALGMGLSPESPRW 287 (300)
Q Consensus 258 ---------------------------------------~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~ 287 (300)
.++|+.|+....+++++++..+|+++..+.
T Consensus 491 l~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~ 559 (599)
T PF06609_consen 491 LPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKY 559 (599)
T ss_pred HHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHh
Confidence 238899999988899999998998876543
No 234
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.56 E-value=4.3e-07 Score=82.66 Aligned_cols=161 Identities=14% Similarity=0.009 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc----cCchHHHHHHhHHHH
Q 022246 108 VACLGAILFGYHLGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTRTFQLDAVPLA 182 (300)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~----~Grr~~~~~~~~~~~ 182 (300)
..+++.++.....+.+..++|.+.++ .|++..+. +.+.+.+.++.+++.+++|+++|| ..+|..+.....++.
T Consensus 277 ~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a--~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 277 PFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQA--NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA 354 (495)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHh--ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33445555555555667778877777 56887777 889999999999999999999999 677777666665555
Q ss_pred HHH-HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccc-hhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246 183 AGA-FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR-GALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (300)
Q Consensus 183 ~~~-~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w 260 (300)
+.. +......+........+....+.....+.......+....+.| -...+....+...+++++|.+-.......++|
T Consensus 355 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~ 434 (495)
T KOG2533|consen 355 IIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGW 434 (495)
T ss_pred HHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhh
Confidence 544 3333333333333333444445556667777777777766655 34444455555555555554443332222577
Q ss_pred HHHHHHhHHH
Q 022246 261 RTMFGLAAIP 270 (300)
Q Consensus 261 ~~~f~~~~~~ 270 (300)
.+.|.+....
T Consensus 435 ~~~f~~~~~~ 444 (495)
T KOG2533|consen 435 GAVFYMLVAA 444 (495)
T ss_pred hhHHHHHHHH
Confidence 7777444333
No 235
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.54 E-value=9.7e-06 Score=74.00 Aligned_cols=145 Identities=19% Similarity=0.153 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHH-hHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHhhhhhhhhhhhh
Q 022246 142 LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLD-AVPLAAGAFLCATA-Q-SVQTMIIGRVLAGIGIGISSAIVPLY 218 (300)
Q Consensus 142 ~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~-~~~~~~~~~~~~~~-~-~~~~l~~~~~l~G~~~~~~~~~~~~~ 218 (300)
..++..++..+..++..|+.|.++|+-|+||.++.. ..+..++++++.+. + +++...++.++.-++.+.......++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888999999999999999877766554 44444555555553 3 44444555666667888888899999
Q ss_pred hhccCCcccc--------------------------hhhHHHHHHHHHHHHHHHHHhhhhccCC-------CCchHHHHH
Q 022246 219 ISEISPTEIR--------------------------GALGSVNQLFICVGILAALVAGLPLAGN-------PLWWRTMFG 265 (300)
Q Consensus 219 ~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~w~~~f~ 265 (300)
+.|+.+++.+ ++..+.-...+.+|+++.-++.-.+... ..+-|..+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~ 230 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL 230 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence 9999999888 8888888888888887766655443211 133588888
Q ss_pred HhHHHHHHHHH-HhhcCCCChh
Q 022246 266 LAAIPSILLAL-GMGLSPESPR 286 (300)
Q Consensus 266 ~~~~~~~~~~~-~~~~~pe~~~ 286 (300)
+.++..++..+ .++++||.|+
T Consensus 231 ~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 231 IVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC
Confidence 88888766655 5556777654
No 236
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.45 E-value=1.2e-05 Score=70.46 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=97.5
Q ss_pred HHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC-----chHHHH-HHhHHHHHHHHHHHH-----hh------
Q 022246 130 LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-----RTRTFQ-LDAVPLAAGAFLCAT-----AQ------ 192 (300)
Q Consensus 130 ~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G-----rr~~~~-~~~~~~~~~~~~~~~-----~~------ 192 (300)
+..|++++..-. +...++..+... ..+.+|+.||+.+ ||..++ .|.++.+.+..+..+ ..
T Consensus 6 MIvEL~vpA~lv--~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~ 82 (403)
T PF03209_consen 6 MIVELGVPAWLV--ALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS 82 (403)
T ss_pred HHHHhccHHHHH--HHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 456788876665 777777776554 5889999999998 776665 455555554443332 11
Q ss_pred --hH-H--HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246 193 --SV-Q--TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (300)
Q Consensus 193 --~~-~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~ 262 (300)
.+ + ...+...+.|+|.+.......++++|..|+++|+++.++......+|.+++.++.+.+.+....-|.
T Consensus 83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL 157 (403)
T PF03209_consen 83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL 157 (403)
T ss_pred cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 12 2 2345568889999999999999999999999999999999999999999999999988876333343
No 237
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.42 E-value=1.7e-06 Score=58.05 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHH
Q 022246 112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (300)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~ 181 (300)
.+++.+...+...+..+...++.|++..+. |.+.++..+...++++++|+++||+|+++.++....++
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i--Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQI--GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 344455555666777887888899999999 99999999999999999999999999999877665543
No 238
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.39 E-value=1.4e-06 Score=75.28 Aligned_cols=96 Identities=21% Similarity=0.157 Sum_probs=79.5
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC-----------
Q 022246 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP----------- 257 (300)
Q Consensus 189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------- 257 (300)
+...++..+++..++.|.|.+...+..+.++++..+++++++.+++.+..+.+|.+++|++++.+....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 345789999999999999999999999999999999999999999999999999999999999776321
Q ss_pred ----CchHHHHHHhHHHHHHHHHHhhc--CCCC
Q 022246 258 ----LWWRTMFGLAAIPSILLALGMGL--SPES 284 (300)
Q Consensus 258 ----~~w~~~f~~~~~~~~~~~~~~~~--~pe~ 284 (300)
..|++.|++.+.+.++..+++.+ +||.
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~ 117 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPEL 117 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 36999999776665555444434 4553
No 239
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.29 E-value=1.2e-05 Score=69.49 Aligned_cols=123 Identities=10% Similarity=0.107 Sum_probs=105.8
Q ss_pred HHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC--chHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 022246 131 AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGI 208 (300)
Q Consensus 131 ~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 208 (300)
.+.+|+++.+. |.+.+...++.++.+....+..||.. -+-.+..++.++.-..++.+.++....+.+.-.+-.+..
T Consensus 289 ~~rfg~ss~~~--G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~ 366 (451)
T KOG2615|consen 289 HGRFGYSSMQQ--GKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFST 366 (451)
T ss_pred cCccCCChhhh--eeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence 36788988888 88888888888888888889999887 666777777777777788888888888888888888888
Q ss_pred hhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 209 GISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
+...+-...++....|..+||..+|+......++-++||+++|.+..
T Consensus 367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 88788888888999999999999999999999999999999988754
No 240
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.29 E-value=8.6e-05 Score=67.94 Aligned_cols=131 Identities=13% Similarity=0.064 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCc--h----HH-HHHHhHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHh
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGR--T----RT-FQLDAVPLAAGAFLCATA---------QSVQTMIIGRVLAGIG 207 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Gr--r----~~-~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~l~G~~ 207 (300)
+|..++..+...+..|+.+++-.|.+| | +. +.+|+++.+++.+.+.++ .+.+++++..+++++|
T Consensus 311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g 390 (493)
T PRK15462 311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA 390 (493)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence 577888777777777877777666532 2 11 566777777776555431 2567788899999999
Q ss_pred hhhhhhhhhhhhhccCCcccchhhHHHHHHH-HHHHHHHHHHhhhhccCC-----------CCchHHHHHHhHHHHHHH
Q 022246 208 IGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPLAGN-----------PLWWRTMFGLAAIPSILL 274 (300)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~~-----------~~~w~~~f~~~~~~~~~~ 274 (300)
+-...|+..+.++++.|++.||..+|.+... ..+|..++..++...... ...+...|...++..+++
T Consensus 391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764 467777777776655311 023666777777666544
No 241
>PTZ00207 hypothetical protein; Provisional
Probab=98.22 E-value=3.6e-05 Score=71.72 Aligned_cols=164 Identities=11% Similarity=-0.027 Sum_probs=111.9
Q ss_pred hhhhhHHHHHHHh-CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc--------hHH-HHHHhHHHHHHHHHHHHh
Q 022246 122 VVNGALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR--------TRT-FQLDAVPLAAGAFLCATA 191 (300)
Q Consensus 122 ~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr--------r~~-~~~~~~~~~~~~~~~~~~ 191 (300)
++..-+.++.+.+ |.+.++.......+++.+++.+|.+..|.++...-+ |++ +.+..+ +.++.+++++.
T Consensus 371 ~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~ 449 (591)
T PTZ00207 371 VIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLT 449 (591)
T ss_pred eeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHH
Confidence 4444556777888 763333100237888999999999999988822222 222 333333 55555555555
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHH-HHhhhhccCCC----C-----c--
Q 022246 192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAA-LVAGLPLAGNP----L-----W-- 259 (300)
Q Consensus 192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~----~-----~-- 259 (300)
-....+++..++.|++.|..+++...+++|+|. ++-|+-..+......+|..+- -.+.|.+.+.. . |
T Consensus 450 ~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~ 528 (591)
T PTZ00207 450 LPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERV 528 (591)
T ss_pred CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCce
Confidence 433688999999999999999999999999999 878888888888888888654 56666665420 1 1
Q ss_pred -hHHHHHHhHHHHHHHHHHhhc-CCCChhH
Q 022246 260 -WRTMFGLAAIPSILLALGMGL-SPESPRW 287 (300)
Q Consensus 260 -w~~~f~~~~~~~~~~~~~~~~-~pe~~~~ 287 (300)
++..|.+.++++++..++... .-++.++
T Consensus 529 C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~ 558 (591)
T PTZ00207 529 CVVMPLAFLLGLSFLAFITSTYVHLQYRRL 558 (591)
T ss_pred eeHhHHHHHHHHHHHHHHHHhheeeehHHH
Confidence 788999988888777665443 3344433
No 242
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.21 E-value=0.00023 Score=64.56 Aligned_cols=127 Identities=10% Similarity=0.025 Sum_probs=91.5
Q ss_pred hHHHHHHHhCCCh-----hhhHHHHHHHHHHHHHHHH-HhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh--h-----
Q 022246 126 ALEYLAKDLGIAE-----NTVLQGWIVSSLLAGATVG-SFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--Q----- 192 (300)
Q Consensus 126 ~~~~~~~~~~~s~-----~~~~~~~~~~~~~i~~~i~-~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~--~----- 192 (300)
.+-.+.+.+.++. +.. .++-+...+...+. .++.+++++|++|++++-.....+.+...++++. +
T Consensus 25 iLR~lKD~lvv~~~~~gae~i--~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~ 102 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEII--PFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLL 102 (472)
T ss_pred HHHhhhhheeecccCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhc
Confidence 5667788877632 233 67766665555554 7889999999999999877666666665554432 1
Q ss_pred ------------------------hHHHHHHHHHHHHHhhhhhhh-hhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH
Q 022246 193 ------------------------SVQTMIIGRVLAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (300)
Q Consensus 193 ------------------------~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 247 (300)
+.|...++.+...+......+ +-+.++.|.+..++-.+-.+++..+.++|.++++
T Consensus 103 ~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg 182 (472)
T TIGR00769 103 HPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSG 182 (472)
T ss_pred CCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333444455555555555 7889999999999999999999999999999999
Q ss_pred Hhhhhcc
Q 022246 248 VAGLPLA 254 (300)
Q Consensus 248 ~~~~~~~ 254 (300)
.+...+.
T Consensus 183 ~~~~~~~ 189 (472)
T TIGR00769 183 RTIKYFS 189 (472)
T ss_pred HHHHHHH
Confidence 8877765
No 243
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=98.19 E-value=6.9e-05 Score=69.71 Aligned_cols=156 Identities=18% Similarity=0.163 Sum_probs=117.8
Q ss_pred HhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-CchHHHHHHhHHHHHHHHHHHHhhh------
Q 022246 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQS------ 193 (300)
Q Consensus 121 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-Grr~~~~~~~~~~~~~~~~~~~~~~------ 193 (300)
+.....+.++.+++|.+...+ ....+.+.-.....++++++++|-| ||-+++.++.++..++.++..++..
T Consensus 55 g~~~nlv~ylt~~~~~~~~~a--a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p 132 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGA--ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP 132 (571)
T ss_pred cchhHHHHHHHHHhccchHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 345668899999999987655 5666777666777789999999975 8999999988888888665543211
Q ss_pred -------------------HHHHHHHHHHHHHhhhhhhhhhhhhhhccCC---cccc---hhhHHHHHHHHHHHHHHHHH
Q 022246 194 -------------------VQTMIIGRVLAGIGIGISSAIVPLYISEISP---TEIR---GALGSVNQLFICVGILAALV 248 (300)
Q Consensus 194 -------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~---~~~r---~~~~~~~~~~~~~g~~~~~~ 248 (300)
...++....+..+|.|+.-+...++-+|.++ ++++ ...+.++....++|..++-.
T Consensus 133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t 212 (571)
T KOG1237|consen 133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT 212 (571)
T ss_pred ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence 1245556677778999999999999999998 3322 46778888888999988888
Q ss_pred hhhhccCCCCchHHHHHHhHHHHHHHHHHhh
Q 022246 249 AGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (300)
Q Consensus 249 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 279 (300)
+.-++.++ .+|.+.|.+..+..+++.++++
T Consensus 213 ~~vyiq~~-~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 213 VLVYIQDN-VGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHhhhhc-ccceeeccHHHHHHHHHHHHHH
Confidence 77777655 8999999988877766655443
No 244
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=98.06 E-value=3.6e-05 Score=68.29 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=87.3
Q ss_pred HHHHHHhHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcc---cchhhHHHHHHHH
Q 022246 172 RTFQLDAVPLAAGAFLCATAQ---------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE---IRGALGSVNQLFI 239 (300)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~ 239 (300)
|++.++.+++.++.++..++. +...++++.++.++|.|+.-+....+.+|.++++ +|...+.+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567778888888887744432 2356788889999999999999999999999876 3577888899999
Q ss_pred HHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246 240 CVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (300)
Q Consensus 240 ~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 281 (300)
++|..+++.+.+++.++ .+|.+.|++.++..+++.+.++.-
T Consensus 82 n~G~~~~~~~~~~i~~~-~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN-YGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHC-S-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccc-cchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999876 899999999998887777665553
No 245
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.05 E-value=0.00025 Score=62.74 Aligned_cols=106 Identities=21% Similarity=0.136 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHH--HHH---HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL--AAG---AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLY 218 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~--~~~---~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 218 (300)
.+...+|.+|-.++.--...+ |+ |++.+...+-. .+. ..+.-+.++.|.+++.-+..|+..|+.+......
T Consensus 284 ~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~ 359 (402)
T PF02487_consen 284 RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR 359 (402)
T ss_pred HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 677888887766654422221 33 44333332222 222 2233356889999899999999999999999999
Q ss_pred hhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246 219 ISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (300)
Q Consensus 219 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 253 (300)
+.|-.++++|..++|....+-.+|..++.+++-.+
T Consensus 360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999888887654
No 246
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.05 E-value=2.1e-05 Score=69.40 Aligned_cols=126 Identities=20% Similarity=0.250 Sum_probs=87.8
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc----cCchHHHH-HHhHHHHHHHHHHHHhhhHH-----
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTRTFQ-LDAVPLAAGAFLCATAQSVQ----- 195 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~----~Grr~~~~-~~~~~~~~~~~~~~~~~~~~----- 195 (300)
+.+.+..+.|++..-. +.+-...-+...+-+++.|..+|| ||||+.++ .+.++.++..++..++.++.
T Consensus 54 y~tPyl~~lGvphk~~--S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd 131 (498)
T KOG0637|consen 54 YLTPYLQSLGVPHKWS--SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD 131 (498)
T ss_pred cccHHHHHcCCCcccc--cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence 4444556778876544 444444444556678999999995 78877665 45666666777776655432
Q ss_pred ------------HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchh-hHHHHHHHHHHHHHHHHHhhhhc
Q 022246 196 ------------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA-LGSVNQLFICVGILAALVAGLPL 253 (300)
Q Consensus 196 ------------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~~ 253 (300)
.+++...+.=+..-.....+-++++|+.....+.+ +.+++.....+|+.+|-.++...
T Consensus 132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 23333344445566778888999999998877777 99999999999999988887643
No 247
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.04 E-value=8.8e-05 Score=65.12 Aligned_cols=159 Identities=17% Similarity=0.086 Sum_probs=106.5
Q ss_pred hHHHHHHHhCC---C--hhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH-HHhHHHHHHHHHHHHhhh--H-HH
Q 022246 126 ALEYLAKDLGI---A--ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCATAQS--V-QT 196 (300)
Q Consensus 126 ~~~~~~~~~~~---s--~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~-~~~~~~~~~~~~~~~~~~--~-~~ 196 (300)
+.+|+.+..+. + ..++.+++..++..+..++-.|+.|.++|..|+||... ....+..++.++..+.++ + +.
T Consensus 38 fply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~ 117 (438)
T COG2270 38 FPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLL 117 (438)
T ss_pred hHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHH
Confidence 44455554433 2 23444588889999999999999999999999766554 455555566666666654 4 44
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhh--hhccC---------------CCCc
Q 022246 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG--LPLAG---------------NPLW 259 (300)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~~~---------------~~~~ 259 (300)
.+++..+..++.........+++.+..++++-++..++-.....+|+.+.-++. ..+.. ....
T Consensus 118 ~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 197 (438)
T COG2270 118 LLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED 197 (438)
T ss_pred HHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc
Confidence 455667888888888888999999999988777777776666666665544432 11111 1244
Q ss_pred hHHHHHHhHHHHHHHHH-HhhcCCCC
Q 022246 260 WRTMFGLAAIPSILLAL-GMGLSPES 284 (300)
Q Consensus 260 w~~~f~~~~~~~~~~~~-~~~~~pe~ 284 (300)
-|..+.+.++..++..+ .++..++.
T Consensus 198 ~ri~~~l~A~W~li~~iPm~~~v~~~ 223 (438)
T COG2270 198 VRITGLLAALWWLLFALPMILNVHDA 223 (438)
T ss_pred chhHHHHHHHHHHHHHhHHHhccccc
Confidence 68888888888777666 44445543
No 248
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.93 E-value=0.00017 Score=64.71 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCch---H----HHHHHhHHHHHHHHHHHHh----------hhHHHHHHHHHHHHH
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRT---R----TFQLDAVPLAAGAFLCATA----------QSVQTMIIGRVLAGI 206 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr---~----~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~l~G~ 206 (300)
.|..++..+.-.+..++..++.-+.+++ + =+.+++++++.+.++.... .+.++++...+++++
T Consensus 327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~ 406 (498)
T COG3104 327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF 406 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 4777877777778888888777775544 1 2345555555555444332 257888899999999
Q ss_pred hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC-----CCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG-----NPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
|+=+..|+..++++...|+...+..++.+......|..++..+++.-.. ........|+..++..++..+..+.
T Consensus 407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888888888777763210 1244667788888777666554433
No 249
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.91 E-value=0.0001 Score=66.80 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=106.9
Q ss_pred HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhh-hhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022246 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG-SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGI 206 (300)
Q Consensus 128 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g-~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 206 (300)
-++...++.+..+. +...+...+...+++++.. .+.-.+|-|+++..|++.-.+..++.+++.+.|+++...++.++
T Consensus 266 ~yl~~~f~w~~~~~--s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~ 343 (463)
T KOG2816|consen 266 LYLKAKFGWNKKEF--SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL 343 (463)
T ss_pred EEEeeecCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Confidence 45667789988888 8778888887888888766 78888999999999999999999999999999999888877776
Q ss_pred hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246 207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (300)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (300)
. +...+...+.++-+..++++|+++++......+..+++|.+-+.+.
T Consensus 344 ~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 344 A-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred h-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 5 4567888999999999999999999999999999988888877764
No 250
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.79 E-value=0.00042 Score=60.07 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc-----ccCchHHHHH-HhHHH
Q 022246 108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-----KFGRTRTFQL-DAVPL 181 (300)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd-----~~Grr~~~~~-~~~~~ 181 (300)
...+.+..++.-.+... .+|.+.+.-|.|.++. +....++.= ..-.++|.++.| |+||||..++ +..+.
T Consensus 35 lLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ll 109 (510)
T KOG3574|consen 35 LLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--AIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLL 109 (510)
T ss_pred HHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--hhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeeehHHHH
Confidence 33445566666666666 8888888778877665 443333321 123578999999 9999987554 44445
Q ss_pred HHHHHHHHHh-----------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhh
Q 022246 182 AAGAFLCATA-----------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG 250 (300)
Q Consensus 182 ~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 250 (300)
+..+.+.+.. ++...+....++.-+..+.--...-.+...+..+++-|.+......+...|.+++..+.
T Consensus 110 G~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 110 GLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 5555544432 23333434455666666655666667777888888888888777777777777665554
Q ss_pred hhc
Q 022246 251 LPL 253 (300)
Q Consensus 251 ~~~ 253 (300)
-.+
T Consensus 190 LaL 192 (510)
T KOG3574|consen 190 LAL 192 (510)
T ss_pred eEe
Confidence 333
No 251
>PRK03612 spermidine synthase; Provisional
Probab=97.79 E-value=0.0047 Score=57.23 Aligned_cols=126 Identities=14% Similarity=0.007 Sum_probs=73.6
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH-HhHHHHHHH-HHH----HHhhhH-HHHHH
Q 022246 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL-DAVPLAAGA-FLC----ATAQSV-QTMII 199 (300)
Q Consensus 127 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~-~~~~~~~~~-~~~----~~~~~~-~~l~~ 199 (300)
.-.+.--+|.+..+. +.+.+++++|.++|..+++++.++.-++...+- +..+.+... .+. ++.... ..++.
T Consensus 38 ~r~l~~~~G~s~~~~--~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~ 115 (521)
T PRK03612 38 GTLASYLLGDSVTQF--STVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYV 115 (521)
T ss_pred HHHHHHHhCchHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567766666 899999999999999998888744333332211 111111111 111 111111 12233
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
..++.++..|+..|....+..+... ++-+...|-.+....+|+++|.++.+++.-
T Consensus 116 ~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 116 LVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 4456778888888877766655332 223566777777788888888888777654
No 252
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.61 E-value=0.00025 Score=62.74 Aligned_cols=151 Identities=14% Similarity=-0.023 Sum_probs=92.7
Q ss_pred HHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc-hHHHHHHhHHHHHHHHHHHHh----hhHHHHHHHHHHHHH
Q 022246 132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPLAAGAFLCATA----QSVQTMIIGRVLAGI 206 (300)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr-r~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~l~G~ 206 (300)
..-|++.... |++..+..++.+++..+.|.+.||... |.++.+......++....... ...+.+++.-.+.|+
T Consensus 294 ~~sgY~~~~a--G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~ 371 (480)
T KOG2563|consen 294 CPSGYEGVFA--GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGF 371 (480)
T ss_pred ccccCCcccc--chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHH
Confidence 3446665555 999999999999999999999999864 444444444444443222211 123445555577788
Q ss_pred hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC--chHH-HHHHhHHHHHHHHHHhhcCCC
Q 022246 207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL--WWRT-MFGLAAIPSILLALGMGLSPE 283 (300)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~w~~-~f~~~~~~~~~~~~~~~~~pe 283 (300)
+..+.+|+..-+-.|..-|..-++..|+.+...++-+++-.++-+....... +|.+ .-+......++.+++..++++
T Consensus 372 ~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~ 451 (480)
T KOG2563|consen 372 FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP 451 (480)
T ss_pred hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence 8888889888888887766656777888776666655555555555554422 2322 333333334444444444444
Q ss_pred C
Q 022246 284 S 284 (300)
Q Consensus 284 ~ 284 (300)
.
T Consensus 452 ~ 452 (480)
T KOG2563|consen 452 D 452 (480)
T ss_pred h
Confidence 3
No 253
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.39 E-value=0.0029 Score=60.22 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=88.9
Q ss_pred hhhhhHHHHHHHhCCChhhhHHHHHHHHHHH-HHHHHHhhhhhhccccC--chHHHHHHhHHHHHHHHHHH---------
Q 022246 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFLCA--------- 189 (300)
Q Consensus 122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i-~~~i~~~~~g~lsd~~G--rr~~~~~~~~~~~~~~~~~~--------- 189 (300)
...+...++++.+|++..++ +++.+...+ +.+++.+++|+++||++ .|+++..++++..+..++..
T Consensus 349 ~~~~lP~yl~~~~g~s~~~a--g~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 426 (633)
T TIGR00805 349 YITFLPKYLENQYGISSAEA--NFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCES 426 (633)
T ss_pred HHHHHHHHHHHHcCCcHHHH--HHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCC
Confidence 44456668888899998888 888877665 66889999999999998 44555555554444432211
Q ss_pred ---------------------H-------hh-------------------------------------------------
Q 022246 190 ---------------------T-------AQ------------------------------------------------- 192 (300)
Q Consensus 190 ---------------------~-------~~------------------------------------------------- 192 (300)
- ..
T Consensus 427 ~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~ 506 (633)
T TIGR00805 427 APVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAK 506 (633)
T ss_pred CccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCc
Confidence 0 00
Q ss_pred ---------h-HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHH-HHHHHHHHHhhhhccC
Q 022246 193 ---------S-VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFI-CVGILAALVAGLPLAG 255 (300)
Q Consensus 193 ---------~-~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 255 (300)
+ +..++++.++..+..+........++....|+++|..++|+..... .+|.+=+|++.|.+.+
T Consensus 507 ~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD 580 (633)
T TIGR00805 507 KGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLID 580 (633)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhh
Confidence 0 1223333444444444555566667778889999999999966554 5578889999998876
No 254
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.37 E-value=0.0029 Score=56.13 Aligned_cols=126 Identities=16% Similarity=0.020 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccch
Q 022246 150 LLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG 229 (300)
Q Consensus 150 ~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~ 229 (300)
-.+-..+..+++.++.+|+.-+.=+....++.+++.++.+++++.+.-+++-++.+++.|........+.. .+++
T Consensus 68 di~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~---- 142 (402)
T PF02487_consen 68 DILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK---- 142 (402)
T ss_pred HHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc----
Confidence 33445566677788888876555456667788889999999999998888889999998887777777644 5553
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 230 ALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 230 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
...+-+..+...++++|+..-..+.....+-|..+.+..++.++.++.+++
T Consensus 143 ~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~ 193 (402)
T PF02487_consen 143 SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFF 193 (402)
T ss_pred cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777665555443355688888887777666655444
No 255
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0061 Score=55.04 Aligned_cols=106 Identities=14% Similarity=0.012 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcc
Q 022246 147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226 (300)
Q Consensus 147 ~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 226 (300)
.++....+.+++++.+.+.|+.|.|+.++++..++....+..-+ +|-+.+++.-++.|+|.+..+..-..+++|...++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 66677778899999999999999999999999998887776655 45667788899999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246 227 IRGALGSVNQLFICVGILAALVAGLPL 253 (300)
Q Consensus 227 ~r~~~~~~~~~~~~~g~~~~~~~~~~~ 253 (300)
.+.+..++.......+.++|.++...+
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~ 161 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIY 161 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheee
Confidence 888888888877777777776555444
No 256
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.0007 Score=60.20 Aligned_cols=132 Identities=22% Similarity=0.182 Sum_probs=78.3
Q ss_pred HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc-------hHHHHH----HhHHHHHHHHHHHH-hhhHH
Q 022246 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-------TRTFQL----DAVPLAAGAFLCAT-AQSVQ 195 (300)
Q Consensus 128 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr-------r~~~~~----~~~~~~~~~~~~~~-~~~~~ 195 (300)
++..+-.|.+.++. -+...+...+..+|.+++|.++||+-| .++=.+ +..+.+.+.++... ..+..
T Consensus 272 ~~~~~~~~~~~~~~--~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~ 349 (493)
T KOG1330|consen 272 YYSYELIGFDHNAT--LIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSM 349 (493)
T ss_pred HHHHHHhCCccccc--hhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHH
Confidence 33334445555555 477788888899999999999999422 221111 22222222222222 22223
Q ss_pred HHHHHHHHHHHhhh-hhhhhhhhhhhccCCcccchhhHHHHHHHH-HHHHHHHHHhhhhccCCCCchH
Q 022246 196 TMIIGRVLAGIGIG-ISSAIVPLYISEISPTEIRGALGSVNQLFI-CVGILAALVAGLPLAGNPLWWR 261 (300)
Q Consensus 196 ~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~w~ 261 (300)
.+....++.|+... ...+....+..|..|+++|..+.++-.... .+|-+-+|.+.|.+.+...+|+
T Consensus 350 ~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 350 IFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred HHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 33334455554433 345566678889999999999999955554 4466667767778777655666
No 257
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=97.29 E-value=0.057 Score=48.78 Aligned_cols=162 Identities=13% Similarity=0.022 Sum_probs=102.4
Q ss_pred hHHHHHHHhCCChhhh-HHHHHHHHHHH-HHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh------------
Q 022246 126 ALEYLAKDLGIAENTV-LQGWIVSSLLA-GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA------------ 191 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~-~~~~~~~~~~i-~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~------------ 191 (300)
.+-.+.+.+.++.... ...++-+...+ +..+..++.+++.+++.|.+++-.-+..+..+.+++++.
T Consensus 45 ~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~ 124 (509)
T COG3202 45 LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDP 124 (509)
T ss_pred HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCH
Confidence 5566777776652221 11455555555 567778889999999999999877666666666655531
Q ss_pred ---h--------h---------HHHHHHHHHHHHHhhhhhhh-hhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhh
Q 022246 192 ---Q--------S---------VQTMIIGRVLAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG 250 (300)
Q Consensus 192 ---~--------~---------~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 250 (300)
. + .|..-+...+.-+-.....+ .-+....|.+..++-.+..+.++.+.+++..++..+.
T Consensus 125 ~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~ 204 (509)
T COG3202 125 EFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT 204 (509)
T ss_pred HHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1 1 13333333333343344444 5567888999999999999999999999998888887
Q ss_pred hhccCCCCc---------hHHHHHHhHHHHHHHHHHhhc----CCCChhH
Q 022246 251 LPLAGNPLW---------WRTMFGLAAIPSILLALGMGL----SPESPRW 287 (300)
Q Consensus 251 ~~~~~~~~~---------w~~~f~~~~~~~~~~~~~~~~----~pe~~~~ 287 (300)
.++...... .+..+.+.++.++++.++..+ +.++|..
T Consensus 205 ~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f 254 (509)
T COG3202 205 SWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLF 254 (509)
T ss_pred HHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Confidence 777543222 445555555555555555444 3445543
No 258
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.021 Score=51.62 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcc---ccCchHHHHHHhHHHHHHHHHHHHh------------------hhHHHHHHHHH
Q 022246 144 GWIVSSLLAGATVGSFTGGSLAD---KFGRTRTFQLDAVPLAAGAFLCATA------------------QSVQTMIIGRV 202 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd---~~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~ 202 (300)
+.......+|..++..+.+.+++ ++||++.+.++..+..+..++.-.. +++...++.-+
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 34444445555666666777775 5799999998888877777765432 24566778889
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhh
Q 022246 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL 251 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 251 (300)
+.|++-+......+.++.+.+ ++.|..+.+++-.-..++..++-....
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999 577889999988887777766544443
No 259
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.11 E-value=0.0022 Score=58.10 Aligned_cols=151 Identities=11% Similarity=0.016 Sum_probs=97.9
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH----------hhhHHHHHHHHHHHH
Q 022246 136 IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT----------AQSVQTMIIGRVLAG 205 (300)
Q Consensus 136 ~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~l~G 205 (300)
+++.-. +.+..+..++..+|..++..+.-+..-|+++....++.++..+.-.. .++.+..+.--++..
T Consensus 252 fs~~f~--~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~ 329 (433)
T PF03092_consen 252 FSPSFY--GTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEE 329 (433)
T ss_pred cCHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHH
Confidence 665555 67777777777888888877766777788887777766655443211 112222223335555
Q ss_pred HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC-------CCchHHHHHHhHHHHHHHHHHh
Q 022246 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-------PLWWRTMFGLAAIPSILLALGM 278 (300)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~w~~~f~~~~~~~~~~~~~~ 278 (300)
+.....+-+...+++++.|+..-|+..++..+..++|..++..++..+.+. ..+-.+..++..++.++.+.+.
T Consensus 330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll 409 (433)
T PF03092_consen 330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL 409 (433)
T ss_pred HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 555566667777899999999999999999999999888888887776532 1122344455555555555556
Q ss_pred hcCCCChhHH
Q 022246 279 GLSPESPRWL 288 (300)
Q Consensus 279 ~~~pe~~~~~ 288 (300)
.++|+..+..
T Consensus 410 ~lLp~~~~~~ 419 (433)
T PF03092_consen 410 FLLPPQKRIT 419 (433)
T ss_pred HHcCCCchhh
Confidence 6677755433
No 260
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.00046 Score=57.16 Aligned_cols=96 Identities=22% Similarity=0.329 Sum_probs=65.4
Q ss_pred hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022246 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (300)
Q Consensus 125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 204 (300)
+..-++-..+|....++ +.+.....-..+++..+.|-|+||-|||+..+.-.+.+.+.++ .-.++.+-.+++.|++.
T Consensus 58 PYvYyLYstYgFgkG~I--gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LG 134 (454)
T KOG4332|consen 58 PYVYYLYSTYGFGKGDI--GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLG 134 (454)
T ss_pred ceeeeeehhcCccCCcc--ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhh
Confidence 34445666778877777 5554444444566778889999999999975544333333222 22467888999999999
Q ss_pred HHhhhhhhhhhhhh-hhccC
Q 022246 205 GIGIGISSAIVPLY-ISEIS 223 (300)
Q Consensus 205 G~~~~~~~~~~~~~-~~~~~ 223 (300)
|+..+..++..-++ +.|.-
T Consensus 135 GiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 135 GIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 99998888777664 44543
No 261
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=96.89 E-value=0.02 Score=51.92 Aligned_cols=108 Identities=15% Similarity=0.060 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCch--HHHHHH--hHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHhhhh
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLD--AVPLAAGAFLCATA---------QSVQTMIIGRVLAGIGIGI 210 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr--~~~~~~--~~~~~~~~~~~~~~---------~~~~~l~~~~~l~G~~~~~ 210 (300)
-....+++++-.+|..+..+.. .-++| ++++.+ =+++....++|..- ++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4567778888888877554431 11222 333322 22333333444322 3556677778999999999
Q ss_pred hhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhh
Q 022246 211 SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP 252 (300)
Q Consensus 211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 252 (300)
..+..+.+..+..++++|..+..++..+..+|..+|..++..
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888888888776543
No 262
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.89 E-value=0.031 Score=50.41 Aligned_cols=126 Identities=18% Similarity=0.151 Sum_probs=87.5
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH------hh----hHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT------AQ----SVQ 195 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~------~~----~~~ 195 (300)
....+...-|+++... |..-++..+....+.+++.++.+|+|..+.=..+...-.++..++.. .+ +..
T Consensus 280 lmt~yl~~~G~s~~~i--gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~ 357 (432)
T PF06963_consen 280 LMTAYLKSQGYSPSVI--GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY 357 (432)
T ss_pred HHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence 3343444449998888 88899999999999999999999999888766665544333332221 12 233
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246 196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (300)
Q Consensus 196 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 253 (300)
.++.+-.+.=+|.=++--...-++.|..|+++||...|.-.....+--++-..++-.+
T Consensus 358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333334444555555666677889999999999999998888888777766665443
No 263
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=96.50 E-value=0.34 Score=44.61 Aligned_cols=103 Identities=15% Similarity=0.066 Sum_probs=71.1
Q ss_pred HHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh---------h----------------------hHHHHHHHH
Q 022246 153 GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---------Q----------------------SVQTMIIGR 201 (300)
Q Consensus 153 ~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~---------~----------------------~~~~l~~~~ 201 (300)
+..+...+..+++++++|.+++-+....+.....+.++. + +.|...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 345556779999999999998876665555554444431 0 122233333
Q ss_pred HHHHHhhhhhhh-hhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 202 VLAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 202 ~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
++.-+......+ .-+.+..|.++.++-.+..+++..+.++|.+++..+...+..
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444344444 468899999999999999999999999999988887777655
No 264
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.44 E-value=0.0031 Score=57.09 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=56.1
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
++.|++.-.......++-++...++.++++.+++.....++.+++|++...+... .|.|+...+.+...++...
T Consensus 396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~-~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL-SGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh-cCccHHHHHHHHHHHHHHH
Confidence 4555555555666778889999999999999999999999999999988777654 6677766666555544433
No 265
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.43 E-value=0.0015 Score=59.23 Aligned_cols=73 Identities=25% Similarity=0.332 Sum_probs=57.5
Q ss_pred HHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH-HhHHHHHHHHHHHH
Q 022246 116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL-DAVPLAAGAFLCAT 190 (300)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~-~~~~~~~~~~~~~~ 190 (300)
.+...+.+.+.++.+.+++|+++.+. |.++..--+..+++.|++|+++|||-+|+.+++ ++++...+.++..+
T Consensus 23 ~~~~~g~l~pll~vy~kQLGl~p~~~--Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 23 FGARFGSLFPLLAVYFKQLGLNPAVV--GTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred eeecccccchHHHHHHHHcCCCHHHh--hhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence 34445566778889999999999999 999999999999999999999999987665554 55555555555544
No 266
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=96.23 E-value=0.0085 Score=51.59 Aligned_cols=161 Identities=17% Similarity=0.084 Sum_probs=107.7
Q ss_pred hHHHHH-HHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022246 126 ALEYLA-KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (300)
Q Consensus 126 ~~~~~~-~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 204 (300)
..|++. .+.|+++.+.. .-+.-+..-.+.+.-++.=.+.|-.--|++++.-.+...+..++.-+.++.+.+=++-++.
T Consensus 27 ~tpyl~gp~~NlT~~~l~-~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~Fy 105 (433)
T KOG3810|consen 27 LTPYLLGPDKNLTEDQLT-NEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFY 105 (433)
T ss_pred cchhccCCCCCccHHHHh-cccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhc
Confidence 444544 34566655431 1111122222344445555789999899998887777777777777888888888888888
Q ss_pred HHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC-CCchHHHHHHhHHHHHHHHHHhhcCCC
Q 022246 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLALGMGLSPE 283 (300)
Q Consensus 205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~w~~~f~~~~~~~~~~~~~~~~~pe 283 (300)
|...+. ....++++-+..+++++.++.++.-.....|...|..++-.+... ..++...=.+......+..++.+++|.
T Consensus 106 G~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~ 184 (433)
T KOG3810|consen 106 GPATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPR 184 (433)
T ss_pred ChHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCC
Confidence 887654 567888888999999999999998888777877777777766542 234454445554444555667778877
Q ss_pred ChhHH
Q 022246 284 SPRWL 288 (300)
Q Consensus 284 ~~~~~ 288 (300)
.++..
T Consensus 185 v~rSl 189 (433)
T KOG3810|consen 185 VKRSL 189 (433)
T ss_pred Cchhh
Confidence 66443
No 267
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.18 E-value=0.0013 Score=61.16 Aligned_cols=133 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHhCCChhhhHHHHHHHHHHH-HHHHHHhhhhhhccccC--chHHHHHHhHHHHHHHHH------HH---
Q 022246 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFL------CA--- 189 (300)
Q Consensus 122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i-~~~i~~~~~g~lsd~~G--rr~~~~~~~~~~~~~~~~------~~--- 189 (300)
.....+.|++.+|+++...+ +.+..+..+ +.++|.+++|++..|+. .|.++....+...+..+. ..
T Consensus 324 ~~tF~pKylE~QF~~sas~A--~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~ 401 (539)
T PF03137_consen 324 FATFLPKYLESQFGLSASQA--SLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPN 401 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHH--HHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCC
Confidence 33445669999999998887 666655554 66788999999999884 333333322222222211 00
Q ss_pred ---------H------------------------------------hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCC
Q 022246 190 ---------T------------------------------------AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISP 224 (300)
Q Consensus 190 ---------~------------------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~ 224 (300)
. ...+..+++..++.-+..+........++....+
T Consensus 402 ~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~ 481 (539)
T PF03137_consen 402 PPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVP 481 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCC
Confidence 0 0012223444444445555556666667778889
Q ss_pred cccchhhHHHHHHH-HHHHHHHHHHhhhhccCC
Q 022246 225 TEIRGALGSVNQLF-ICVGILAALVAGLPLAGN 256 (300)
Q Consensus 225 ~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 256 (300)
+++|+.++|+.... ..+|.+=+|++.|.+.+.
T Consensus 482 ~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 482 PEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ---------------------------------
T ss_pred hhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 99999999996554 455788899999988764
No 268
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.74 Score=40.96 Aligned_cols=163 Identities=12% Similarity=-0.006 Sum_probs=79.2
Q ss_pred HHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHH----HHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh--
Q 022246 118 YHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLA----GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-- 191 (300)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i----~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-- 191 (300)
..++.+....+|+.+++-....+ ......+.+ ...+....-..+.-|. |+++.....+...+..+.+.++
T Consensus 32 lpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~il~i~~l~~~~v 107 (406)
T KOG1479|consen 32 LPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAILFIVTLDLALV 107 (406)
T ss_pred cchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666778888777544432 233444433 3344444445555552 2222111111111222222221
Q ss_pred -------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 022246 192 -------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (300)
Q Consensus 192 -------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f 264 (300)
..+...++.-++.+++.+......+...+++-++-.++...|- +.++.+-.++--+......+...+=...|
T Consensus 108 ~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~-a~aG~l~Sl~~i~tka~~~~~~~sA~~yF 186 (406)
T KOG1479|consen 108 KTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQ-ALAGTLTSLLRILTKAAFSDSRTSALIYF 186 (406)
T ss_pred ccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcc-hhHhHHHHHHHHHHHHhcCCCCceeehhH
Confidence 2345556666778888887777777777765443333332222 22222222222222222222234445667
Q ss_pred HHhHHHHHHHHHHhhcCCCCh
Q 022246 265 GLAAIPSILLALGMGLSPESP 285 (300)
Q Consensus 265 ~~~~~~~~~~~~~~~~~pe~~ 285 (300)
.+..++.+++++++..+|+.|
T Consensus 187 ~~s~~~~llC~i~y~~l~~lp 207 (406)
T KOG1479|consen 187 ITSTVILLLCFVLYLVLPKLP 207 (406)
T ss_pred HHHHHHHHHHHHHHHHhhcch
Confidence 777777777777777667665
No 269
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=95.90 E-value=0.042 Score=49.81 Aligned_cols=142 Identities=11% Similarity=0.065 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH--hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc-----ccCchHHHHH-HhHH
Q 022246 109 ACLGAILFGYHLGVVNGALEYLAKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-----KFGRTRTFQL-DAVP 180 (300)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd-----~~Grr~~~~~-~~~~ 180 (300)
+.+.+++++.-.+......|.+.++ -+.+.++. +...-+ ..-+ -.-++|.++.| |+||||..++ .-.+
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~~fSla-~~Pf-SlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l 80 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--AIFSLA-SYPF-SLKLLWAPIVDSVYSKRIGRRKSWIIPIQYL 80 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHh--eeeeee-echh-HHHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence 3445666666566554577877777 56666654 222111 1111 12455666665 8999997665 2333
Q ss_pred HHHHHHHHHHhh------------------------hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHH
Q 022246 181 LAAGAFLCATAQ------------------------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ 236 (300)
Q Consensus 181 ~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 236 (300)
.++.++..+... +...+....++.-+..+----+.-.+.-.+..++.++.|.....
T Consensus 81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt 160 (544)
T PF13000_consen 81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT 160 (544)
T ss_pred HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence 333333333211 01112222223333333333344456666777888888888888
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 022246 237 LFICVGILAALVAGLPLA 254 (300)
Q Consensus 237 ~~~~~g~~~~~~~~~~~~ 254 (300)
.+..+|.+++-.+.-.+.
T Consensus 161 vG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 161 VGQTAGYFLSFTVFLALN 178 (544)
T ss_pred hHhhhhHHHHHHHHHhhC
Confidence 888888877766554443
No 270
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=95.76 E-value=0.21 Score=44.66 Aligned_cols=108 Identities=11% Similarity=0.085 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHH--HHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTF--QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE 221 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 221 (300)
|.+-++..+.++++.+..|++..++.+-.-+ ....++.+...++++...|.+...++.++.+.......++...-++.
T Consensus 288 G~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~ 367 (412)
T PF01770_consen 288 GAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAK 367 (412)
T ss_pred hHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888889999999996666664433 34445556667778888999998888888777777777777777777
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246 222 ISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (300)
Q Consensus 222 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (300)
....+.-|..+|+.... +.++-.++...+.
T Consensus 368 ~l~~e~yaLVFGiNtf~---Al~LQtilT~iV~ 397 (412)
T PF01770_consen 368 NLSEERYALVFGINTFV---ALVLQTILTLIVV 397 (412)
T ss_pred hccccceeeeeeeHHHH---HHHHHHheEEEEE
Confidence 77656558888876543 3344444444443
No 271
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.29 E-value=0.24 Score=47.31 Aligned_cols=59 Identities=8% Similarity=0.036 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHH-HHHHHHHHHhhhhccC
Q 022246 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFI-CVGILAALVAGLPLAG 255 (300)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 255 (300)
+++..++.-+..+......+.++....++++|..++|+..+.. .+|.+=+|++-|++.+
T Consensus 589 Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 589 FLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred HHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence 3444444445445555677778888999999999999965554 5577888999999876
No 272
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=95.28 E-value=0.15 Score=43.77 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=49.4
Q ss_pred HHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccC
Q 022246 154 ATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (300)
Q Consensus 154 ~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~ 223 (300)
.+...++.+.+..++|-|+.++++...+..... .-+-+.+..++..-.+.|++.+..+..-.+|++++-
T Consensus 71 l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 71 LIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 345556666889999999999887776654332 223356778888888999998888777766666554
No 273
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=95.21 E-value=1.1 Score=40.87 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHh----hhhccCC---CCchHHHHH
Q 022246 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA----GLPLAGN---PLWWRTMFG 265 (300)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~----~~~~~~~---~~~w~~~f~ 265 (300)
.++..++.-++.|++.+.......++.+ .+|++. ++.+..|..++++++.++ .....+. ..+=...|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 4555666678888888888877777777 456443 333333333333333322 2112121 112234555
Q ss_pred HhHHHHHHHHHHhhcCCCCh
Q 022246 266 LAAIPSILLALGMGLSPESP 285 (300)
Q Consensus 266 ~~~~~~~~~~~~~~~~pe~~ 285 (300)
+..++.+++++.+..+++.|
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~ 199 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLP 199 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCH
Confidence 55555566666665666554
No 274
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=94.79 E-value=3.1 Score=37.77 Aligned_cols=163 Identities=10% Similarity=-0.145 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhC-CChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH
Q 022246 110 CLGAILFGYHLGVVNGALEYLAKDLG-IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188 (300)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~ 188 (300)
+...++...+.-+.....+.+..+.. -+--.. +...-+-.+..+++.+..|.+.||..|.+++..+.++--+...+.
T Consensus 8 y~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~--siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s 85 (432)
T PF06963_consen 8 YLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPV--SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAAS 85 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHH
Confidence 33444444444455555555444442 121111 222333334456677888999999999998766654433332221
Q ss_pred H------Hh--h----hHHHH---HHHHHHHHHhhhhhhhhhh--hhhhccC------CcccchhhHHHHHHHHHHHHHH
Q 022246 189 A------TA--Q----SVQTM---IIGRVLAGIGIGISSAIVP--LYISEIS------PTEIRGALGSVNQLFICVGILA 245 (300)
Q Consensus 189 ~------~~--~----~~~~l---~~~~~l~G~~~~~~~~~~~--~~~~~~~------~~~~r~~~~~~~~~~~~~g~~~ 245 (300)
+ +. . +.+.. ++.-.+.|...- ...... ++=-||. ++..+....+.+--.=.+--++
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~-Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckll 164 (432)
T PF06963_consen 86 CALFLLLLSYPSSSSQSSWLFIALFALLILLGAIER-LASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLL 164 (432)
T ss_pred HHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHH-HHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHH
Confidence 1 11 1 11222 221222221111 111111 1112332 2233344444444444556789
Q ss_pred HHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 246 ALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 246 ~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
+|++.|.+... .+.+...++.++..++..+
T Consensus 165 aPl~vG~l~t~-~s~~~~~~~i~~~N~~S~~ 194 (432)
T PF06963_consen 165 APLFVGLLMTF-ASPVIAAIFIAGWNLASVF 194 (432)
T ss_pred HHHHHHHHhhc-cCHHHHHHHHHHHHHHHHH
Confidence 99999999775 7788877777777766544
No 275
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=94.55 E-value=0.43 Score=39.70 Aligned_cols=101 Identities=16% Similarity=0.047 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhccc-cCchHHHH----HHhHHHHHHHHHHHH-h----hhHHHHHHHHHHHHHhhhhhhhh
Q 022246 145 WIVSSLLAGATVGSFTGGSLADK-FGRTRTFQ----LDAVPLAAGAFLCAT-A----QSVQTMIIGRVLAGIGIGISSAI 214 (300)
Q Consensus 145 ~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~----~~~~~~~~~~~~~~~-~----~~~~~l~~~~~l~G~~~~~~~~~ 214 (300)
...-++..|..+|.+..|++... +.||+.+. .+.+++.+..+..+. . .+...++++-|+.|++.=+..++
T Consensus 145 ~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~V 224 (267)
T PF07672_consen 145 IFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGV 224 (267)
T ss_pred HHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44555666777777888888774 45555443 233333333333211 1 13556777778888776555665
Q ss_pred hhhhhhccC--CcccchhhHHHHHHHHHHHHHH
Q 022246 215 VPLYISEIS--PTEIRGALGSVNQLFICVGILA 245 (300)
Q Consensus 215 ~~~~~~~~~--~~~~r~~~~~~~~~~~~~g~~~ 245 (300)
...+.-|.= .|++-|..+|+.-+.+.+...+
T Consensus 225 iL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi 257 (267)
T PF07672_consen 225 ILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTI 257 (267)
T ss_pred HhcChhhhcCCCcceehhHHHHHHHHHHHHHHH
Confidence 555544432 2333455555544443333333
No 276
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=94.42 E-value=0.012 Score=50.76 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHhhhhhhccc-cCchHHHHHH--hHHHHHHHHHHH----------HhhhHHHHHHHHHHHHHhhhhhh
Q 022246 146 IVSSLLAGATVGSFTGGSLADK-FGRTRTFQLD--AVPLAAGAFLCA----------TAQSVQTMIIGRVLAGIGIGISS 212 (300)
Q Consensus 146 ~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~~--~~~~~~~~~~~~----------~~~~~~~l~~~~~l~G~~~~~~~ 212 (300)
...+++++-.+|..+.++.-=+ -.+|++++.+ =+++....++|. ..++-+..++..++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4557788888888877654211 1345544332 122222223331 12345667778899999999999
Q ss_pred hhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhh
Q 022246 213 AIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP 252 (300)
Q Consensus 213 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 252 (300)
+..+.+..+..++++|..+-.+......+|..+|..++..
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp HHHH------------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888888888887777766543
No 277
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=94.33 E-value=0.13 Score=45.63 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=73.5
Q ss_pred HHHHHH-HHHHHHHHHhhhhhhccccCchHHHHHH-hHHHHHHHHH-HH------HhhhHHHHHHHHHHHHHhhhhhhhh
Q 022246 144 GWIVSS-LLAGATVGSFTGGSLADKFGRTRTFQLD-AVPLAAGAFL-CA------TAQSVQTMIIGRVLAGIGIGISSAI 214 (300)
Q Consensus 144 ~~~~~~-~~i~~~i~~~~~g~lsd~~Grr~~~~~~-~~~~~~~~~~-~~------~~~~~~~l~~~~~l~G~~~~~~~~~ 214 (300)
-....+ +++.-.+|.+...++-++- ||+..+.. +=+..+-.+. |- .-.+-+++++...+.|+..|=..+.
T Consensus 285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl 363 (406)
T KOG1479|consen 285 LLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL 363 (406)
T ss_pred HHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence 345555 8888888877777776664 34433322 2222222222 21 1346677888889999999988888
Q ss_pred hhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhh
Q 022246 215 VPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP 252 (300)
Q Consensus 215 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 252 (300)
.+.+.....+++++-.+-.+.......|.+.|..++..
T Consensus 364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88899999999999888888888777777777666543
No 278
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=93.52 E-value=1.9 Score=39.50 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
++.-++..+.....+....++=+.+..|..-|+.|.+.+...++|+..+..+.-.+.+
T Consensus 409 I~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 409 IIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 3444677777777888888899999999999999999999999998877766555443
No 279
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=93.49 E-value=2 Score=39.37 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCc--hHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGR--TRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE 221 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Gr--r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 221 (300)
|.+-++..+..+++.+..|++-.+..+ ..++.+..++.+...++++..+|.|..+++.++.+.......++...-++.
T Consensus 301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~ 380 (511)
T TIGR00806 301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS 380 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777788889999998776644 234445556666667788889999999999999998888888888888888
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246 222 ISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (300)
Q Consensus 222 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 253 (300)
....+.-|..+|+.... +.++-.++.-.+
T Consensus 381 ~L~~~~~aLvFGiNtfv---Al~LQtilT~iV 409 (511)
T TIGR00806 381 SLSKELCALVFGINTFV---ATALKTIITAVV 409 (511)
T ss_pred HhcccceEEEEecHHHH---HHHHHHheEEEE
Confidence 87766668999887654 334444444343
No 280
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=93.29 E-value=0.12 Score=44.11 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCc-hHHH-----HHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGR-TRTF-----QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPL 217 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Gr-r~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~ 217 (300)
-|....|.+|..+ .+=+-++=+ +... ..-.+++.+...+..+.++++..++.-++-|+..|+.+....-
T Consensus 291 RwyqvlYQlGVFi-----SRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~ 365 (409)
T KOG3880|consen 291 RWYQVLYQLGVFI-----SRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFH 365 (409)
T ss_pred hhhheeeeeeEEE-----EeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHH
Confidence 6888888765332 222222212 2211 1223344445556778899999999999999988988888888
Q ss_pred hhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246 218 YISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (300)
Q Consensus 218 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 253 (300)
-+.+-.++++|-.+++...++-.+|..++.+++-.+
T Consensus 366 ~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 366 NIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 888888889999999999999999988887776554
No 281
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=92.53 E-value=4.8 Score=32.49 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhhhh---ccccCchHHHHHHhHHHHHHH
Q 022246 146 IVSSLLAGATVGSFTGGSL---ADKFGRTRTFQLDAVPLAAGA 185 (300)
Q Consensus 146 ~~~~~~i~~~i~~~~~g~l---sd~~Grr~~~~~~~~~~~~~~ 185 (300)
......+++.+|..+++.+ ..+..+|+.....+.+-++..
T Consensus 51 ~~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll 93 (209)
T PF06912_consen 51 RYLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILL 93 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 3444555666777777777 233444444444444433333
No 282
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=91.96 E-value=0.1 Score=46.74 Aligned_cols=128 Identities=12% Similarity=-0.102 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhcc-
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEI- 222 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~- 222 (300)
.|-..++.+...+..+..-++.+|+|-|+.+..+...+.++..+.+..++.......+-..|+-.+....+-+..++..
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 4566777778888899999999999977777777776777777777777777777777666644443333333322221
Q ss_pred --------------------CCccc--chhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHH
Q 022246 223 --------------------SPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271 (300)
Q Consensus 223 --------------------~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 271 (300)
..... +|...|+.++...+..++..+..|.+.+...+=+..-.+.+..+
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s 485 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVA 485 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHH
Confidence 11112 25666667777777776666555555543233333333333333
No 283
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=91.61 E-value=4.6 Score=35.42 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCch--HHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE 221 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 221 (300)
|..-++..+..+++.+..|.+--++.|. ..+.++.+.-+...++++...+.|..++..++.+.......++....++.
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 5556667777888899999998777665 34556666677777788888898888888877777777777777777887
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC-CC---------chHHHHHHhHHHHHHHHHH
Q 022246 222 ISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-PL---------WWRTMFGLAAIPSILLALG 277 (300)
Q Consensus 222 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~---------~w~~~f~~~~~~~~~~~~~ 277 (300)
....+.-|..+|+.... +-++-.++.-...+. .. -+...|.+.+++.++....
T Consensus 354 nL~~e~~gLvFGiNTFv---Al~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~ 416 (433)
T KOG3810|consen 354 NLSSELFGLVFGINTFV---ALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGI 416 (433)
T ss_pred hhhhhhheeeeehHHHH---HHHHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHH
Confidence 77766668888887654 444555555554442 11 1344667777766665443
No 284
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=89.26 E-value=6.5 Score=28.29 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHH
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA 183 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~ 183 (300)
+.......++..+++.+.+.+.|..|.+..+.+...+..+
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (141)
T TIGR00880 90 GLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129 (141)
T ss_pred HHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence 5666777788888888888888888877765554444333
No 285
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=87.26 E-value=24 Score=32.51 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=49.4
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCCc-ccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH
Q 022246 201 RVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~ 273 (300)
-++.|+.....+...-..+.+.+|. ++|...+|-+....++..++..++++.+... .||.....+.-++.++
T Consensus 273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~-~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRK-YGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 3556666666676677788888875 4578888887777666665555555666666 8998776666555544
No 286
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=86.83 E-value=19 Score=30.83 Aligned_cols=77 Identities=22% Similarity=0.203 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc---cCchHHHHHHhH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK---FGRTRTFQLDAV 179 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~---~Grr~~~~~~~~ 179 (300)
....+.+.+.+++.-+..+..+..+..+.+..++..+.. ++..+... ..+..+-.++ ||.||.=+++.+
T Consensus 24 l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~--al~lal~A------~~~a~r~~~~~~TfGy~R~eiLaa~ 95 (296)
T COG1230 24 LLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDAL--ALLLALIA------IKLARRPATKRFTFGYKRLEILAAF 95 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHH--HHHHHHHH------HHHhcCCCCCCCCccHhHHHHHHHH
Confidence 334444444444444445555667777888888765555 44443332 2333344443 787776555555
Q ss_pred HHHHHHHH
Q 022246 180 PLAAGAFL 187 (300)
Q Consensus 180 ~~~~~~~~ 187 (300)
+-++..+.
T Consensus 96 ~nav~Li~ 103 (296)
T COG1230 96 LNALLLIV 103 (296)
T ss_pred HHHHHHHH
Confidence 54444443
No 287
>PRK10263 DNA translocase FtsK; Provisional
Probab=86.51 E-value=4.6 Score=41.36 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhhhhccccC
Q 022246 150 LLAGATVGSFTGGSLADKFG 169 (300)
Q Consensus 150 ~~i~~~i~~~~~g~lsd~~G 169 (300)
-+.++.+|..+...|..-||
T Consensus 61 ~Nl~GiVGA~LAD~L~~LFG 80 (1355)
T PRK10263 61 HNLGGMPGAWLADTLFFIFG 80 (1355)
T ss_pred ccccchHHHHHHHHHHHHHh
Confidence 34444455555544444555
No 288
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=85.55 E-value=0.65 Score=39.76 Aligned_cols=124 Identities=17% Similarity=0.050 Sum_probs=73.8
Q ss_pred HHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhH
Q 022246 153 GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALG 232 (300)
Q Consensus 153 ~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 232 (300)
-..+-.+.+..+.||+---+=+.+..++.+.+.++.+++++.++-+.+-.+..++.|.......++ +..+++ ...
T Consensus 74 PsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~l-ss~Y~~----~~i 148 (409)
T KOG3880|consen 74 PSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLAL-SSRYPS----IVI 148 (409)
T ss_pred HHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhh-hccCCC----cee
Confidence 344455666677777543333445556677788888999999988888888888776544333333 333333 223
Q ss_pred HHHHHHHHHHHHHHHHhhhhccC-CCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246 233 SVNQLFICVGILAALVAGLPLAG-NPLWWRTMFGLAAIPSILLALGMGLS 281 (300)
Q Consensus 233 ~~~~~~~~~g~~~~~~~~~~~~~-~~~~w~~~f~~~~~~~~~~~~~~~~~ 281 (300)
+.+..+...++++|..--..+.+ ...+-|....+...+.++.++.++++
T Consensus 149 ~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 149 AGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred ccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 33333333344444444334433 23677888888888777766655553
No 289
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=85.02 E-value=19 Score=30.61 Aligned_cols=134 Identities=17% Similarity=0.184 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccCch--HHHHHHhHHHHHHHHHHHH----hh---hHHHHHHHHHHHHHhhhhhh
Q 022246 142 LQGWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLDAVPLAAGAFLCAT----AQ---SVQTMIIGRVLAGIGIGISS 212 (300)
Q Consensus 142 ~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr--~~~~~~~~~~~~~~~~~~~----~~---~~~~l~~~~~l~G~~~~~~~ 212 (300)
-.|.+.+.++++..+|.-+..++..|-..| ..+.+.++..++...+... ++ +...-++...+.-.+.|..+
T Consensus 283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw 362 (454)
T KOG4332|consen 283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW 362 (454)
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence 347888899999988888887777654433 3344444433333322221 11 12222444555556677889
Q ss_pred hhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 213 AIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 213 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
|..+-+=....|.+.|++.+.++-.-..+-..++-...- ......+-|..|-++....++..+
T Consensus 363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh-~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLH-VDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecc-cccCccccchhhhhhHHHHHHHHH
Confidence 999999999999999998888876554443333221110 111124567788877776655544
No 290
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=84.44 E-value=21 Score=33.75 Aligned_cols=88 Identities=19% Similarity=0.106 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC---CchH--------
Q 022246 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP---LWWR-------- 261 (300)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~w~-------- 261 (300)
+..+++--.++.|++.........-+.-+-+|++.|+.+.+++.....+|..+...+........ .+|-
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~~~~w~~~~~ln~~ 536 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGKAAEWLGFANLNKG 536 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCChhHhhhh
Confidence 56778888899999999999988899999999999999999999999999998888875543321 1342
Q ss_pred ---HHHHHhHHHHHHHHHHhhc
Q 022246 262 ---TMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 262 ---~~f~~~~~~~~~~~~~~~~ 280 (300)
..||+.+....+-.+..++
T Consensus 537 ~ld~Fy~lla~~~~~n~~~~~~ 558 (571)
T KOG1237|consen 537 RLDYFYWLLAVYSAVNFLYFLI 558 (571)
T ss_pred HHHHHHHHHHHHHhhhhhheEE
Confidence 3456666655554444333
No 291
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=83.82 E-value=30 Score=30.55 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHH----HhHH---HHHHHHHHHH--hhhHHHHHHHHHHHHHhhhhhhhh
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL----DAVP---LAAGAFLCAT--AQSVQTMIIGRVLAGIGIGISSAI 214 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~----~~~~---~~~~~~~~~~--~~~~~~l~~~~~l~G~~~~~~~~~ 214 (300)
+.+.+.|.....+|+...-++.|.--.-+.+.. |++. ..+..+.+++ .++.+.++++-+++|.-.|+-.|.
T Consensus 46 S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL 125 (508)
T COG4262 46 SLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVGAEIPL 125 (508)
T ss_pred HHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcchHH
Confidence 678888888888888887777664322211111 1111 1111112222 246677888889999999988888
Q ss_pred hhhhhhc
Q 022246 215 VPLYISE 221 (300)
Q Consensus 215 ~~~~~~~ 221 (300)
.+.++..
T Consensus 126 ~mrml~~ 132 (508)
T COG4262 126 LMRMLQR 132 (508)
T ss_pred HHHHHHH
Confidence 8877655
No 292
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=83.10 E-value=5.7 Score=30.24 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 022246 192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILA 245 (300)
Q Consensus 192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 245 (300)
+++..+++..++.|+|. ..+.|.+++-.+.+++-|..+|+-.+-.+++-+.
T Consensus 95 P~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 95 PPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred CchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 45555555555555543 3566778888888888899999988777776543
No 293
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=80.11 E-value=11 Score=36.31 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (300)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 272 (300)
+.++.+.-.++.+++.........-+-.+-.|++.+....+++.+...+|.++...+...-... .-|--.+.+.+++.+
T Consensus 564 ~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 642 (654)
T TIGR00926 564 SILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFENFS-VQAAEFFLFASLMLV 642 (654)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh-HHHHHHHHHHHHHHH
Confidence 3455566677788888877777777778889999999999999999999999888777654322 223334444555555
Q ss_pred HHHHHh
Q 022246 273 LLALGM 278 (300)
Q Consensus 273 ~~~~~~ 278 (300)
+++++.
T Consensus 643 ~~~~f~ 648 (654)
T TIGR00926 643 VMAIFS 648 (654)
T ss_pred HHHHHH
Confidence 555443
No 294
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=76.25 E-value=19 Score=31.72 Aligned_cols=13 Identities=8% Similarity=0.289 Sum_probs=9.3
Q ss_pred ccccCchHHHHHH
Q 022246 165 ADKFGRTRTFQLD 177 (300)
Q Consensus 165 sd~~Grr~~~~~~ 177 (300)
.||+.-.|++.+.
T Consensus 208 ~e~ft~sKllav~ 220 (416)
T KOG2765|consen 208 VERFTLSKLLAVF 220 (416)
T ss_pred cchhhHHHHHHHH
Confidence 7888887776543
No 295
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=75.14 E-value=41 Score=32.81 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=33.1
Q ss_pred hhhhhhccc----cCchHHHHHHhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhhhh
Q 022246 159 FTGGSLADK----FGRTRTFQLDAVPLAAGAFLCATA-QSVQTMIIGRVLAGIGIGIS 211 (300)
Q Consensus 159 ~~~g~lsd~----~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~ 211 (300)
.+.+-++|. -||.+-++++.++++++.+...+. +..+.+....++.+++.++.
T Consensus 41 ~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~ml 98 (704)
T TIGR01666 41 IIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFIML 98 (704)
T ss_pred HHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 334566664 356677778888888777776654 44555555556666655543
No 296
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.19 E-value=13 Score=26.28 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhhhhcccc-CchHHH
Q 022246 151 LAGATVGSFTGGSLADKF-GRTRTF 174 (300)
Q Consensus 151 ~i~~~i~~~~~g~lsd~~-Grr~~~ 174 (300)
+++..+-....|||.|+| |-+|..
T Consensus 52 fIsGilVGa~iG~llD~~agTsPwg 76 (116)
T COG5336 52 FISGILVGAGIGWLLDKFAGTSPWG 76 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 334444456678999986 444443
No 297
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=73.17 E-value=47 Score=26.73 Aligned_cols=22 Identities=5% Similarity=-0.452 Sum_probs=10.9
Q ss_pred hHHHHHHhHHHHHHHHHHhhcC
Q 022246 260 WRTMFGLAAIPSILLALGMGLS 281 (300)
Q Consensus 260 w~~~f~~~~~~~~~~~~~~~~~ 281 (300)
.+...|+..++++++.++.+++
T Consensus 176 p~l~~~~~iiig~i~~~~~~~l 197 (206)
T PF06570_consen 176 PVLPPWVYIIIGVIAFALRFYL 197 (206)
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554443
No 298
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=73.14 E-value=55 Score=31.96 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=34.3
Q ss_pred hhhhhhcccc----CchHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhhh
Q 022246 159 FTGGSLADKF----GRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGRVLAGIGIGIS 211 (300)
Q Consensus 159 ~~~g~lsd~~----Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~ 211 (300)
.+++-++|.= ||.+-++++.++++++.+...+.. ..+.+....++.+++.++.
T Consensus 41 ~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~ml 98 (701)
T TIGR01667 41 IIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFILL 98 (701)
T ss_pred hHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 4455666643 567778888888888888777654 4445555556666665544
No 299
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=64.87 E-value=56 Score=27.75 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=14.1
Q ss_pred HHhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhh
Q 022246 176 LDAVPLAAGAFLCATA-QSVQTMIIGRVLAGIGIG 209 (300)
Q Consensus 176 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~ 209 (300)
.+.+++++..++..+. ++.+.+.+..++.+++.+
T Consensus 4 ~~~~~~~~~s~~~~l~~~~~~l~~~~~~~~~F~~~ 38 (284)
T PF12805_consen 4 ATLLCFALASLLVGLLFPYPWLLILVLALLTFFFG 38 (284)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 3344443444444333 333444444444444443
No 300
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=63.78 E-value=1.1e+02 Score=27.49 Aligned_cols=118 Identities=14% Similarity=0.011 Sum_probs=59.3
Q ss_pred HHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH------H------hhhHHHHHHHHHHHHHhhhh--hhhhhhhh--
Q 022246 155 TVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA------T------AQSVQTMIIGRVLAGIGIGI--SSAIVPLY-- 218 (300)
Q Consensus 155 ~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~------~------~~~~~~l~~~~~l~G~~~~~--~~~~~~~~-- 218 (300)
.+..++.|-..|+..|+|++...+.+--+..++++ + +.+...+..+.++.-...+. .......+
T Consensus 77 lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i 156 (503)
T KOG2601|consen 77 LVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILI 156 (503)
T ss_pred HhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 44556678888999999998776555443333322 2 12444444444333222111 11111111
Q ss_pred hhccC----CcccchhhH---HHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH
Q 022246 219 ISEIS----PTEIRGALG---SVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (300)
Q Consensus 219 ~~~~~----~~~~r~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~ 273 (300)
--||. ..+.+.... +..-..-..-..+.|.+.|.+.+. .+-|..-.+.++..++
T Consensus 157 ~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitf-vsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 157 ERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITF-VSLRASAGTFAAWALV 217 (503)
T ss_pred cccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhccccee-echhhhhhhhHHHHHH
Confidence 11222 122232222 444444445567888888888765 6666655555554444
No 301
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=63.04 E-value=94 Score=26.54 Aligned_cols=68 Identities=16% Similarity=0.005 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 022246 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (300)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~ 265 (300)
.-..|.+.|+-. ..+.+.++++.-+||.+++--..--...+..+..++-|++|-.+....+|.+..-+
T Consensus 22 ~~~lr~~~g~~~-vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l~~~~~~i~~~~i 89 (287)
T PF07760_consen 22 IPPLRVILGFPF-VLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLLNYTPWGIRLIPI 89 (287)
T ss_pred hhHHHHHHHHHH-HHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHH
Confidence 345677777654 34567788899999966543222223333444455566666555332234443333
No 302
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=62.17 E-value=1.1e+02 Score=27.75 Aligned_cols=55 Identities=15% Similarity=-0.002 Sum_probs=45.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
..+.+......+...++..+.+.+|...|+.+.+.+...++|+.....+...+.+
T Consensus 376 y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 376 YAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 4566666666677888899999999999999999999999998777777766655
No 303
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=61.26 E-value=35 Score=25.89 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhhhhhccccCchH
Q 022246 147 VSSLLAGATVGSFTGGSLADKFGRTR 172 (300)
Q Consensus 147 ~~~~~i~~~i~~~~~g~lsd~~Grr~ 172 (300)
+.-|.+++.+...+.|++.+|..+++
T Consensus 59 TgGyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 59 TGGYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred CChHHHHHHHHHHHHHHHHHhccccc
Confidence 45577888889999999999988763
No 304
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=59.38 E-value=1.3e+02 Score=26.58 Aligned_cols=106 Identities=14% Similarity=0.069 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHH---HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA---GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYIS 220 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~ 220 (300)
|.+.....+...+ .++.+++...+|--+.+..++++..= ..+....+.|.......-.+.|.-.|.+..-......
T Consensus 50 GI~~laP~la~~l-~~vi~Pl~~~~GaDPamfa~tiLA~DMGGY~LA~~la~~~~~~~fsG~ilgsmlG~TIvFtIPVaL 128 (354)
T PF04346_consen 50 GIMALAPVLAAFL-SPVIGPLFQAIGADPAMFAGTILANDMGGYQLAMELAQDPEAGIFSGLILGSMLGATIVFTIPVAL 128 (354)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHhhhcCcCHHHHHHHcCChhhHHHHHHHHHHhhcccEEeehhhhh
Confidence 4444444444444 45677888899999988887666432 2345556666666666656666555554333333333
Q ss_pred ccCCcccc-hhhHHHHHHHH--HHHHHHHHHhh
Q 022246 221 EISPTEIR-GALGSVNQLFI--CVGILAALVAG 250 (300)
Q Consensus 221 ~~~~~~~r-~~~~~~~~~~~--~~g~~~~~~~~ 250 (300)
.+..++.| -.+.|+..... .+|.+++.++.
T Consensus 129 gii~k~D~~y~a~Gil~GiitIPiG~~vggl~~ 161 (354)
T PF04346_consen 129 GIIEKEDHKYLAKGILAGIITIPIGCFVGGLIA 161 (354)
T ss_pred hhcChhhhHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 44444443 34444443322 23444444433
No 305
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=55.52 E-value=56 Score=25.87 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhhhhhccccCc
Q 022246 147 VSSLLAGATVGSFTGGSLADKFGR 170 (300)
Q Consensus 147 ~~~~~i~~~i~~~~~g~lsd~~Gr 170 (300)
+.-|.+++.++..+.|++.||..+
T Consensus 88 TgGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 88 TGGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhc
Confidence 456778888999999999999885
No 306
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.69 E-value=36 Score=24.14 Aligned_cols=52 Identities=12% Similarity=-0.084 Sum_probs=25.8
Q ss_pred cccchhhHHHHHHHHHHH-HHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 225 TEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 225 ~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
++.++.+.++-...-.++ .++|..+++++-.....=.|.+++..++.+++.+
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~ 89 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGV 89 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 345677777755555554 4566666555432212223444444444444433
No 307
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=54.39 E-value=1.7e+02 Score=29.13 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=7.1
Q ss_pred hHHHHHHHhCCChh
Q 022246 126 ALEYLAKDLGIAEN 139 (300)
Q Consensus 126 ~~~~~~~~~~~s~~ 139 (300)
....+.+.+.++..
T Consensus 28 ~s~~lkeRl~Ls~~ 41 (810)
T TIGR00844 28 VSLFVKEKLYIGES 41 (810)
T ss_pred HHHHHHhhcCCcHH
Confidence 33445556666543
No 308
>COG3619 Predicted membrane protein [Function unknown]
Probab=54.29 E-value=1.2e+02 Score=24.88 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCc
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGR 170 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Gr 170 (300)
.....+..+.+++|......+..|..|
T Consensus 58 a~~~~~pii~Fv~Gv~~~~~~~r~~~~ 84 (226)
T COG3619 58 AVLLLLPILAFVLGVAAAELISRRATR 84 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455666667777776666666666664
No 309
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=53.24 E-value=1.6e+02 Score=29.81 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH
Q 022246 123 VNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175 (300)
Q Consensus 123 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~ 175 (300)
+......+...+|++..-. | .++..+|..+.-++....+-|-|.-.+-+
T Consensus 952 lV~~at~IG~vlGIse~Vm--G--lTfLA~GTSIPDlisSvivArkG~gdMAV 1000 (1096)
T TIGR00927 952 MVWWAHQVGETIGISEEIM--G--LTILAAGTSIPDLITSVIVARKGLGDMAV 1000 (1096)
T ss_pred HHHHHHHhhhhcCCChhhh--h--hhhhhhhcccHHHHHHHHHHHccCCccee
Confidence 3446667777888887655 3 23333345455555555555555444433
No 310
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=52.92 E-value=2e+02 Score=26.85 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=45.3
Q ss_pred HHHHHHhhhhhhhhhhhhhhccCCcc-cchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH
Q 022246 201 RVLAGIGIGISSAIVPLYISEISPTE-IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (300)
Q Consensus 201 ~~l~G~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~ 273 (300)
-+..|+.........-..+.+.+|.. ++...+|-+....++-.++-.++++.+... .||+..-.+.-+..++
T Consensus 289 vi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~-~GW~~~AlitPiv~li 361 (491)
T PF03219_consen 289 VIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRR-FGWRTAALITPIVILI 361 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhHHHHHH
Confidence 34555666666666667778888754 346666666655555555555666777655 8998877665444443
No 311
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=52.17 E-value=84 Score=25.12 Aligned_cols=27 Identities=15% Similarity=-0.061 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 229 GALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 229 ~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
+++.++...+..+|.++|.++..++..
T Consensus 140 ~rA~~~~~~~L~~G~~lGs~l~~~l~~ 166 (194)
T PF11833_consen 140 GRAFLWTLGGLVVGLILGSLLASWLPV 166 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 778888777777888888888777654
No 312
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=51.86 E-value=1.9e+02 Score=26.49 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=62.4
Q ss_pred HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCch-HHHHHHhHHHHHHHHHHHHh--hhHHHHHHHHHHH
Q 022246 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT-RTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLA 204 (300)
Q Consensus 128 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr-~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~ 204 (300)
..+...+|++.++. ..+.+.-.+...++.++--....++|-| +++..+.+.+..-.+...-. .....++..-+..
T Consensus 38 livg~a~~l~~~~~--~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~g~~~~~~~G~ii~a 115 (451)
T COG2233 38 LLVGLALGLSAEDT--AYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTTGDGIAALLGGIIAA 115 (451)
T ss_pred HHhccCCCCCHHHH--HHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34566889998888 7888888888888888766644434434 44444444443333333333 2355555555556
Q ss_pred HHhhhhhhhhhhh-hhhccCCcccchhhHHH
Q 022246 205 GIGIGISSAIVPL-YISEISPTEIRGALGSV 234 (300)
Q Consensus 205 G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~ 234 (300)
|+..-.. +.... .+..+|||-.-|...-.
T Consensus 116 g~~~~li-~~~~~~~l~rlfPPvVtG~Vi~~ 145 (451)
T COG2233 116 GLVYFLI-SPIVKIRLARLFPPVVTGPVVLV 145 (451)
T ss_pred HHHHHHH-HHHHHHHHHHhCCCceEEeEeee
Confidence 6554333 23333 88889998877655433
No 313
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=51.24 E-value=1.3e+02 Score=25.22 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=23.7
Q ss_pred HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHH
Q 022246 190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGIL 244 (300)
Q Consensus 190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 244 (300)
++.|..-.+..-...|+.... ....-..+...| +|.....+..++..+|..
T Consensus 30 LS~s~~FyY~sg~~lGv~~s~--li~~~~~~k~lP--rk~~~~~~l~gg~~~~~y 80 (249)
T PF10225_consen 30 LSRSVLFYYSSGISLGVLASL--LILLFQLSKLLP--RKSMFYAVLYGGWSFGLY 80 (249)
T ss_pred hccChhHHHhhhHHHHHHHHH--HHHHHHHHHHcc--CcchhHHHHhhhhHHHHH
Confidence 344544444444444443222 223335567777 344444444444444443
No 314
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=50.72 E-value=3.6e+02 Score=29.21 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=13.8
Q ss_pred CchHHHHHHhHHHHHHHHHHhhc
Q 022246 258 LWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 258 ~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
.+|+.++++.+++.++.++..++
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~ 217 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVIC 217 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 56888877666655544444433
No 315
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=49.32 E-value=31 Score=28.26 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=54.3
Q ss_pred hhhccccCchH--------HHHHHhHHHHHHHHH-HHHhhhHH--HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchh
Q 022246 162 GSLADKFGRTR--------TFQLDAVPLAAGAFL-CATAQSVQ--TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA 230 (300)
Q Consensus 162 g~lsd~~Grr~--------~~~~~~~~~~~~~~~-~~~~~~~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~ 230 (300)
+.++||||-.- ++++|.++-+++.-+ ..+..+.. .-..+-.-.|.|.+...+....-+.+.+| +....
T Consensus 128 aiI~ekYGldSpEgrGVl~~Yi~GTvfGtiffsllas~~a~~~~fhP~ALAMasGvGSgSMMaAa~~aL~~~~P-~~a~~ 206 (241)
T PF11299_consen 128 AIISEKYGLDSPEGRGVLGVYIIGTVFGTIFFSLLASLLASLGIFHPYALAMASGVGSGSMMAAASGALAAAYP-EMADQ 206 (241)
T ss_pred eeeehhcCCCCccccceEEEeeehhhHHHHHHHHHHHHHHhccCCCHHHHHHHcCCcHHHHHHHHHHHHHHHCc-chHHH
Confidence 57889997432 345555544443322 22222111 12334455788888888888888899996 55667
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhc
Q 022246 231 LGSVNQLFICVGILAALVAGLPL 253 (300)
Q Consensus 231 ~~~~~~~~~~~g~~~~~~~~~~~ 253 (300)
..++....+.+..+.|..+.-++
T Consensus 207 i~A~AaaSNllt~~~G~Y~~ifi 229 (241)
T PF11299_consen 207 ILAFAAASNLLTSVTGLYMSIFI 229 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666665554443
No 316
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=48.88 E-value=1.2e+02 Score=23.20 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCch
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRT 171 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr 171 (300)
.++.+...+|..+..+-.|.||-.+...
T Consensus 99 ~~~~S~~~Fg~gllGisYGilSaSWD~~ 126 (153)
T PF11947_consen 99 VLLVSLVFFGLGLLGISYGILSASWDPE 126 (153)
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccCCC
Confidence 4677777777777788889998877654
No 317
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=45.11 E-value=41 Score=23.85 Aligned_cols=44 Identities=20% Similarity=0.097 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~ 187 (300)
|-+-+.|.-.+++.+++++++.|+.-+-+.=.+|..++.++..+
T Consensus 57 GRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~i 100 (107)
T PF02694_consen 57 GRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAI 100 (107)
T ss_pred hhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHh
Confidence 66677787788889999999999987766656665555555443
No 318
>PRK11588 hypothetical protein; Provisional
Probab=44.70 E-value=1.5e+02 Score=27.66 Aligned_cols=22 Identities=9% Similarity=-0.250 Sum_probs=13.9
Q ss_pred CchHHHHHHhHHHHHHHHHHhh
Q 022246 258 LWWRTMFGLAAIPSILLALGMG 279 (300)
Q Consensus 258 ~~w~~~f~~~~~~~~~~~~~~~ 279 (300)
.+||...|+......+..+..+
T Consensus 229 ~~~R~i~~~v~~~i~i~yv~~Y 250 (506)
T PRK11588 229 SGLRIVMWVIFTLIGLIFTMVY 250 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6789888877665544444443
No 319
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=44.60 E-value=1.1e+02 Score=21.53 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhhccCCC---CchHHHHHHhHHH
Q 022246 240 CVGILAALVAGLPLAGNP---LWWRTMFGLAAIP 270 (300)
Q Consensus 240 ~~g~~~~~~~~~~~~~~~---~~w~~~f~~~~~~ 270 (300)
.+..++|.++|.++-... ..|-..|.+.+++
T Consensus 53 v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~ 86 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVV 86 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 334445555555554321 2344444444443
No 320
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=44.26 E-value=40 Score=28.91 Aligned_cols=81 Identities=12% Similarity=-0.067 Sum_probs=42.9
Q ss_pred cCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH
Q 022246 168 FGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (300)
Q Consensus 168 ~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 247 (300)
+.++..+..++++..++..+..+..|...- ...+.|+. .+...+++.. | |-+...+.. +.+.+.++|
T Consensus 96 i~p~~al~fgl~L~~~g~~~l~~~vn~laa--~l~~~gi~---~Yv~vYT~~l-----K-R~T~~Nivi--Gg~aGa~Pp 162 (304)
T COG0109 96 ISPREALAFGLVLGVAGFSLLWFLVNLLAA--VLGLFGIF---FYVVVYTLWL-----K-RRTPQNIVI--GGFAGAMPP 162 (304)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---HHhhhhhhhc-----c-CCcccceee--eeccccccc
Confidence 345678888999888888888666664221 22223322 2333333221 2 222222221 234566778
Q ss_pred HhhhhccCCCCchH
Q 022246 248 VAGLPLAGNPLWWR 261 (300)
Q Consensus 248 ~~~~~~~~~~~~w~ 261 (300)
++|+...+...++-
T Consensus 163 liGwaAvtg~~~~~ 176 (304)
T COG0109 163 LIGWAAVTGSISLG 176 (304)
T ss_pred cceeeeeeCCCCch
Confidence 88877766545553
No 321
>PLN02332 membrane bound O-acyl transferase (MBOAT) family protein
Probab=44.18 E-value=1.7e+02 Score=27.00 Aligned_cols=29 Identities=7% Similarity=-0.065 Sum_probs=17.1
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhHHHHH
Q 022246 170 RTRTFQLDAVPLAAGAFLCATAQSVQTMI 198 (300)
Q Consensus 170 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (300)
.|+.+...++.+.+..++-++.+++....
T Consensus 340 ~~~~~~~~~~t~~~sa~WHG~~~gYyl~f 368 (465)
T PLN02332 340 KKPGFFQLLATQTVSAVWHGLYPGYILFF 368 (465)
T ss_pred cchhHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 34444444555666777777777665544
No 322
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.13 E-value=1.5e+02 Score=27.22 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=13.4
Q ss_pred hhhhhHHHHHHHhCCChhhh
Q 022246 122 VVNGALEYLAKDLGIAENTV 141 (300)
Q Consensus 122 ~~~~~~~~~~~~~~~s~~~~ 141 (300)
.+.++...+-+.+|+++.-.
T Consensus 442 LMVWwa~~iGeT~gIp~eIM 461 (588)
T KOG1307|consen 442 LMVWWANIIGETLGIPDEIM 461 (588)
T ss_pred HHHHHHHHcccccCCCHHHh
Confidence 34456667777888877655
No 323
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=43.18 E-value=80 Score=27.84 Aligned_cols=65 Identities=9% Similarity=0.158 Sum_probs=45.7
Q ss_pred hHHHHHHHhCCC-hhh--hHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH
Q 022246 126 ALEYLAKDLGIA-ENT--VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT 190 (300)
Q Consensus 126 ~~~~~~~~~~~s-~~~--~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~ 190 (300)
..+...+++.-+ +.+ ....|.-...++|..++..+.+++.|++|....+.+..+...++.+....
T Consensus 54 i~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 54 ISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 555666666644 222 22356777778888888889999999999988888887777777665553
No 324
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=43.00 E-value=11 Score=23.34 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=16.5
Q ss_pred CchHHHHHHhHHHHHHHHHHh
Q 022246 258 LWWRTMFGLAAIPSILLALGM 278 (300)
Q Consensus 258 ~~w~~~f~~~~~~~~~~~~~~ 278 (300)
-|||...++.++++++.+.++
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Y 23 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALY 23 (58)
T ss_pred ccccchhhHHHHHHHHHHHHh
Confidence 479999998888888776554
No 325
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=41.67 E-value=1.3e+02 Score=21.48 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 241 VGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 241 ~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
+|.++.-+..........+|...+.+..+..++..+..++
T Consensus 66 ~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~W~v~a~~~~~ 105 (108)
T PF11345_consen 66 IGTIICVLVVWFLLKASHGWLLSIILGLIVWFVVAVVIFF 105 (108)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444454444357777766555555555444433
No 326
>PRK03818 putative transporter; Validated
Probab=41.42 E-value=2.9e+02 Score=26.20 Aligned_cols=78 Identities=9% Similarity=0.036 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 222 (300)
|+...++.+|...|.-+..-+....|.+..++ +.++..+..++..+. .-..-+=..+.+..++.+...+...+++.|.
T Consensus 438 GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~tp~l~~a~~~ 516 (552)
T PRK03818 438 GIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGY-GFLITAVPLLIVGILARMLAKMNYLTLCGMLAGSMTDPPALAFANNL 516 (552)
T ss_pred hHHHHHHHHHhhhhHHHHHHHhccchHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccCCCcHHHHHHhcc
Confidence 55556666666666666655555566655443 333333222222211 1111111122223344445556666777774
No 327
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=40.63 E-value=99 Score=21.01 Aligned_cols=36 Identities=19% Similarity=0.114 Sum_probs=23.2
Q ss_pred hhhhhhccccCc-------hHHHHHHhHHHHHHHHHHHHhhhH
Q 022246 159 FTGGSLADKFGR-------TRTFQLDAVPLAAGAFLCATAQSV 194 (300)
Q Consensus 159 ~~~g~lsd~~Gr-------r~~~~~~~~~~~~~~~~~~~~~~~ 194 (300)
+.++++.+|.-+ ++.+.++.++...+.+++++..+.
T Consensus 36 p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS~ 78 (86)
T PF10785_consen 36 PPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRSS 78 (86)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555554433 677777777777777777776554
No 328
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=40.46 E-value=89 Score=19.34 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCC
Q 022246 239 ICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPES 284 (300)
Q Consensus 239 ~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~ 284 (300)
..+|.+++-+.+..... .+++....++..+.+++..++...+|+.
T Consensus 11 ~il~~vvgyI~ssL~~~-~~n~~~~~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 11 FILGEVVGYIGSSLTGV-TYNFTTAAIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred HHHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455555544444333 3667777777777776666655555543
No 329
>PRK11715 inner membrane protein; Provisional
Probab=39.90 E-value=3e+02 Score=25.22 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=32.3
Q ss_pred hhccccCchHH-----HHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHH
Q 022246 163 SLADKFGRTRT-----FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV 234 (300)
Q Consensus 163 ~lsd~~Grr~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 234 (300)
++.+...++++ +++|+.+.....++.+++-+... ..+.++.. .++......|+.-.....+||..++.
T Consensus 319 FlfE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF-~~AYliAa---~a~v~li~~Y~~~vl~~~k~g~~~~~ 391 (436)
T PRK11715 319 FLFELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGF-TLAYLIAA---LACVLLIGFYLSAVLRSWKRGLLFAA 391 (436)
T ss_pred HHHHHhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhch-HHHHHHHH---HHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34555555554 34555555555566666654321 11222222 22223344455666655666665544
No 330
>COG2119 Predicted membrane protein [Function unknown]
Probab=39.84 E-value=1.9e+02 Score=22.92 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246 149 SLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (300)
Q Consensus 149 ~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~ 186 (300)
...++.+++.+.+.++++|+..|++-.++.+++.+..+
T Consensus 142 g~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal 179 (190)
T COG2119 142 GMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFAL 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 34456677788899999999999988877666655543
No 331
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.71 E-value=20 Score=31.21 Aligned_cols=13 Identities=0% Similarity=-0.442 Sum_probs=6.8
Q ss_pred hhhhhccccCchH
Q 022246 160 TGGSLADKFGRTR 172 (300)
Q Consensus 160 ~~g~lsd~~Grr~ 172 (300)
..-|+.|+.-.++
T Consensus 178 ~YVW~yep~~~~~ 190 (372)
T KOG2927|consen 178 HYVWIYEPRPLMW 190 (372)
T ss_pred eEEEeccCCchhH
Confidence 3456666654443
No 332
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=39.41 E-value=60 Score=25.30 Aligned_cols=30 Identities=20% Similarity=0.101 Sum_probs=13.6
Q ss_pred HhCCChhhhHHHHHHHHHHHHHHHHHhhhh
Q 022246 133 DLGIAENTVLQGWIVSSLLAGATVGSFTGG 162 (300)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g 162 (300)
-+|+++-.....-.++...+|.++|+.++.
T Consensus 71 I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~ 100 (173)
T PF08566_consen 71 IMGLDPFMVYGLATLACGALGWLVGPSLGN 100 (173)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 346666544323333334444444444433
No 333
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=38.66 E-value=61 Score=16.93 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=3.9
Q ss_pred HHHhhcCCCChh
Q 022246 275 ALGMGLSPESPR 286 (300)
Q Consensus 275 ~~~~~~~pe~~~ 286 (300)
+.+..+++|+|+
T Consensus 17 lffAI~FRePPr 28 (29)
T PF01405_consen 17 LFFAIFFREPPR 28 (29)
T ss_dssp HHHHHHSS----
T ss_pred HHhhhhccCCCC
Confidence 334445677664
No 334
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=38.32 E-value=2e+02 Score=22.80 Aligned_cols=24 Identities=8% Similarity=-0.373 Sum_probs=12.4
Q ss_pred CchHHHHHHhHHHHHHHHHHhhcC
Q 022246 258 LWWRTMFGLAAIPSILLALGMGLS 281 (300)
Q Consensus 258 ~~w~~~f~~~~~~~~~~~~~~~~~ 281 (300)
.+-+..-+...+.+.+.+.+.|++
T Consensus 189 lN~~L~pi~l~IiGav~lalRfyl 212 (226)
T COG4858 189 LNPQLPPIALTIIGAVILALRFYL 212 (226)
T ss_pred CCcCCchHHHHHHHHHHHHHHHHH
Confidence 444444455555555555554444
No 335
>COG1289 Predicted membrane protein [Function unknown]
Probab=38.13 E-value=2e+02 Score=27.97 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHH
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTM 197 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (300)
+|..+...++.. +...+.++.++ +-+++++++++++.++....-+..++
T Consensus 37 ~~~~~~~~i~~~--~~~~~~~~~~~---~rli~tlig~~~~~~~~~~~~~~p~~ 85 (674)
T COG1289 37 SWAVSTVAIVSA--PDSGAVLSKGL---KRLIGTLIGFAVALLLVALLAQEPWL 85 (674)
T ss_pred cHHHHHHHHHhC--cCCCCHHHhhH---HHHHHHHHHHHHHHHHHHHHccCcHH
Confidence 344444443332 34445554444 33566666677777666554433333
No 336
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=37.65 E-value=3.2e+02 Score=24.96 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=32.3
Q ss_pred hhccccCchHH-----HHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHH
Q 022246 163 SLADKFGRTRT-----FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV 234 (300)
Q Consensus 163 ~lsd~~Grr~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 234 (300)
++.+.+.++++ +++|+.+.....++.+++-+.. +..+.++. ..++......|+.-.+...+||..++.
T Consensus 313 flfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~-F~~AYliA---a~a~i~Li~~Y~~~vl~~~k~~~~~~~ 385 (430)
T PF06123_consen 313 FLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIG-FNLAYLIA---ALACIGLISLYLSSVLKSWKRGLIFAG 385 (430)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHH---HHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34455555554 3445555555555666665432 11222222 222333444556666655556555543
No 337
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=37.49 E-value=1.5e+02 Score=20.91 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=6.1
Q ss_pred hhhhcc-ccCchHHH
Q 022246 161 GGSLAD-KFGRTRTF 174 (300)
Q Consensus 161 ~g~lsd-~~Grr~~~ 174 (300)
.|...| +||-++.+
T Consensus 62 lG~WLD~~~~t~~~~ 76 (100)
T TIGR02230 62 VGIWLDRHYPSPFSW 76 (100)
T ss_pred HHHHHHhhcCCCcHH
Confidence 343334 45544433
No 338
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=37.47 E-value=2.5e+02 Score=23.58 Aligned_cols=65 Identities=18% Similarity=0.070 Sum_probs=36.2
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHH
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI 269 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~ 269 (300)
.+.=...|+=.....+++...+|+++|-++.=+-..+..+=-++--..+.++.+. |.+.+.+.+.
T Consensus 24 ~~lE~vL~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l---~~~l~~~fg~ 88 (254)
T COG0861 24 ILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLASISWLLTL---TQPLLYIFGL 88 (254)
T ss_pred HHHHHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHH
Confidence 3333445666777888999999998886665443333222223333334444433 6666666443
No 339
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=37.23 E-value=1.1e+02 Score=20.81 Aligned_cols=35 Identities=17% Similarity=0.425 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcc
Q 022246 192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226 (300)
Q Consensus 192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 226 (300)
+-.+-+++.|.+.|-+.+..-........|+-|..
T Consensus 29 pit~RL~iGR~ilGs~~S~~Aga~Li~~Pdl~plA 63 (89)
T PF04550_consen 29 PITLRLFIGRVILGSAVSVVAGAALIQFPDLPPLA 63 (89)
T ss_pred CCchhHHhHHHHHhhHHHHHHHHHHhcCCCCCHHH
Confidence 33456777888887776665555555555555543
No 340
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=36.58 E-value=1.6e+02 Score=21.00 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhC
Q 022246 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG 135 (300)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (300)
..+....+.++.|.++. .+....|.+.+.+.
T Consensus 51 i~Rt~~FIlicAFGYGl---l~v~~tP~l~~~L~ 81 (106)
T PF11872_consen 51 ILRTLAFILICAFGYGL---LIVWLTPLLARQLA 81 (106)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34444555555666655 33445566666553
No 341
>COG1288 Predicted membrane protein [Function unknown]
Probab=36.56 E-value=3.4e+02 Score=24.89 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=32.9
Q ss_pred HHHhHHHHHHHHHHHHhhhH--HHHHHHHHHHHHh------hhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHH
Q 022246 175 QLDAVPLAAGAFLCATAQSV--QTMIIGRVLAGIG------IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAA 246 (300)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~--~~l~~~~~l~G~~------~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 246 (300)
+.-.++.....++..+++.. ...++...+.++. .+...-..++=++|..... |..+.--++.+..+-.++.
T Consensus 358 i~dTiL~~~~~~lsgls~~~f~i~mli~~~~l~f~VpS~SG~A~ltMPImAPLaD~vgv~-RqvvV~Afq~g~G~~n~I~ 436 (481)
T COG1288 358 ILDTILNYLASLLSGLSSAVFAIGMLIFQALLNFFVPSGSGLAVLTMPIMAPLADLVGVP-RQVVVLAFQLGDGFSNIIA 436 (481)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHheEEEeCCCchhHhhchhhhhhHHhcCCC-HHHhhhhhhhcchhhheec
Confidence 33444555555555554433 2233444555542 2222233344556666543 5555555555544444443
Q ss_pred H
Q 022246 247 L 247 (300)
Q Consensus 247 ~ 247 (300)
|
T Consensus 437 P 437 (481)
T COG1288 437 P 437 (481)
T ss_pred C
Confidence 3
No 342
>PLN02776 prenyltransferase
Probab=36.16 E-value=3e+02 Score=24.22 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=12.2
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhh
Q 022246 170 RTRTFQLDAVPLAAGAFLCATAQS 193 (300)
Q Consensus 170 rr~~~~~~~~~~~~~~~~~~~~~~ 193 (300)
++..+..+.++..++..+.++..|
T Consensus 75 ~~~A~~~~~~l~~~g~~~l~~~~n 98 (341)
T PLN02776 75 VPHAVAWAVVVGAAGVALLAYKTN 98 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666555544443333
No 343
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=35.75 E-value=1.4e+02 Score=20.23 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=36.9
Q ss_pred HHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (300)
Q Consensus 205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~ 275 (300)
|++--..-|..+.++.|..-. ....|+....+.+|..+|.+....+... ...+..+....+.+++..
T Consensus 5 GigRFayTplLP~M~~~~~ls---~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~ 71 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLS---LSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLST 71 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHH
Confidence 333333445555555554322 3445666777777888888777766543 344455555444444433
No 344
>PRK15049 L-asparagine permease; Provisional
Probab=35.53 E-value=3.7e+02 Score=25.00 Aligned_cols=22 Identities=23% Similarity=0.030 Sum_probs=12.6
Q ss_pred chHHHHHHhHHHHHHHHHHhhc
Q 022246 259 WWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 259 ~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
..|+..++..+..++..+.++.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (499)
T PRK15049 446 NGTYTIAALPIIGILLVIGWFG 467 (499)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4677766666555555554444
No 345
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=35.11 E-value=1.2e+02 Score=22.84 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=17.5
Q ss_pred hhhccCCcccchhhHHHHHHHHHH
Q 022246 218 YISEISPTEIRGALGSVNQLFICV 241 (300)
Q Consensus 218 ~~~~~~~~~~r~~~~~~~~~~~~~ 241 (300)
-+.|++|+..|......+......
T Consensus 57 ALkDm~Pp~~R~~i~~~~s~t~s~ 80 (145)
T TIGR00986 57 ALKDIVPPTTRGWIYHKYSTTTNF 80 (145)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHH
Confidence 357999999998777776655443
No 346
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=34.90 E-value=93 Score=26.45 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=30.0
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhh---------ccccCchHH
Q 022246 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSL---------ADKFGRTRT 173 (300)
Q Consensus 127 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~l---------sd~~Grr~~ 173 (300)
+-.+.++.|+++... ..++-...+.-++..++-|.+ .||+|||+.
T Consensus 40 lllfltqiglsp~~~--AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 40 LLLFLTQIGLSPSSR--AMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred HHHHHHHhcCCcchh--HHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 334456678887766 556666666677777777644 468999874
No 347
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=34.83 E-value=75 Score=16.83 Aligned_cols=10 Identities=10% Similarity=-0.061 Sum_probs=5.5
Q ss_pred HhhcCCCChh
Q 022246 277 GMGLSPESPR 286 (300)
Q Consensus 277 ~~~~~pe~~~ 286 (300)
+..+++|+|+
T Consensus 19 FAIfFRepPr 28 (31)
T PRK11875 19 FAIAFRDPPK 28 (31)
T ss_pred HhhhccCCCC
Confidence 3344567664
No 348
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=34.74 E-value=2.9e+02 Score=23.54 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhh
Q 022246 197 MIIGRVLAGIGIGI 210 (300)
Q Consensus 197 l~~~~~l~G~~~~~ 210 (300)
-.+.-.+.++..|.
T Consensus 263 ~~~~~~~~a~aaG~ 276 (317)
T PF02535_consen 263 DIVSGILLAFAAGT 276 (317)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444556665554
No 349
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=34.52 E-value=4.6e+02 Score=25.82 Aligned_cols=26 Identities=12% Similarity=0.214 Sum_probs=13.5
Q ss_pred CchHHHHHHhHHHHHHHHHHhhcCCC
Q 022246 258 LWWRTMFGLAAIPSILLALGMGLSPE 283 (300)
Q Consensus 258 ~~w~~~f~~~~~~~~~~~~~~~~~pe 283 (300)
.+|..+++..+.+.+..++.+.+.|.
T Consensus 291 ys~~L~li~l~~~~l~~l~~~~~~~~ 316 (709)
T COG2274 291 YSWKLTLIVLAAIPLNVLITLIFQPL 316 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666655555554444444444443
No 350
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=34.07 E-value=1.1e+02 Score=22.96 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=17.8
Q ss_pred hhhccCCcccchhhHHHHHHHHHH
Q 022246 218 YISEISPTEIRGALGSVNQLFICV 241 (300)
Q Consensus 218 ~~~~~~~~~~r~~~~~~~~~~~~~ 241 (300)
-+.|++|+..|....+.+......
T Consensus 59 aLkdi~P~~~R~~i~~~~~~~~~~ 82 (137)
T PF04281_consen 59 ALKDIFPPSVRNWISSTVSTTSSA 82 (137)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHH
Confidence 357999999998877776655443
No 351
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=33.83 E-value=1.5e+02 Score=24.78 Aligned_cols=22 Identities=0% Similarity=-0.136 Sum_probs=11.2
Q ss_pred hHHHHHHhHHHHHHHHHHhhcC
Q 022246 260 WRTMFGLAAIPSILLALGMGLS 281 (300)
Q Consensus 260 w~~~f~~~~~~~~~~~~~~~~~ 281 (300)
..+.=++..++.++..+++.++
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFI 135 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeee
Confidence 4444455555555555555554
No 352
>PRK02237 hypothetical protein; Provisional
Probab=33.36 E-value=1.8e+02 Score=20.75 Aligned_cols=44 Identities=16% Similarity=0.010 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~ 187 (300)
|-+-+.|.-.+++.+++++++.|+.-+-+.=.+|..++.++..+
T Consensus 59 GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~i 102 (109)
T PRK02237 59 GRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAV 102 (109)
T ss_pred hhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHH
Confidence 66677788788888999999999987666555555555554433
No 353
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=32.84 E-value=1.3e+02 Score=24.64 Aligned_cols=42 Identities=21% Similarity=-0.126 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 231 LGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 231 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
...++..+..++.++..++.+++. ++.|++.+.+++..+.+.
T Consensus 26 ~l~~~ml~a~l~~~~v~v~ig~l~----~~~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 26 KLPWLMLGAFLGPIAVFVLIGLLF----GSWWYWLIIGILLGLLAA 67 (224)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHHH
Confidence 344444444455444444444443 233555555655544333
No 354
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=32.25 E-value=3.1e+02 Score=23.21 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=9.1
Q ss_pred hHHHHHHhHHHHHHHHHH
Q 022246 171 TRTFQLDAVPLAAGAFLC 188 (300)
Q Consensus 171 r~~~~~~~~~~~~~~~~~ 188 (300)
|..+..+.++..++.++.
T Consensus 92 ~~a~~~~~~l~~~~~~l~ 109 (285)
T PRK12847 92 KQALILLFILLLIALVIL 109 (285)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555555555554444
No 355
>CHL00031 psbT photosystem II protein T
Probab=31.77 E-value=82 Score=16.97 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=6.2
Q ss_pred HHhhcCCCChh
Q 022246 276 LGMGLSPESPR 286 (300)
Q Consensus 276 ~~~~~~pe~~~ 286 (300)
.+..+++|+|+
T Consensus 18 FFAI~FRePPr 28 (33)
T CHL00031 18 FFAIFFREPPK 28 (33)
T ss_pred HHhheecCCCC
Confidence 33445677765
No 356
>PF02660 G3P_acyltransf: Glycerol-3-phosphate acyltransferase; InterPro: IPR003811 This entry describes glycerol-3-phosphate acyltransferase. It catalyses the transfer of an acyl group from acyl-phosphate (acyl-PO4) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilises acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. ; GO: 0005886 plasma membrane
Probab=31.58 E-value=2.6e+02 Score=21.96 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=20.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcc
Q 022246 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226 (300)
Q Consensus 186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 226 (300)
++.=....+-..++.+.+..--.........+++.+.||.-
T Consensus 50 ~~~D~~KG~l~v~la~~~~~~~~~~~l~~l~~vlGH~~p~~ 90 (178)
T PF02660_consen 50 LLLDILKGFLAVLLARFLFPSPWWLYLAGLAAVLGHNFPIF 90 (178)
T ss_pred HHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhccChhh
Confidence 33333444444444454443322223455556778888753
No 357
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=30.92 E-value=1.6e+02 Score=24.24 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH
Q 022246 149 SLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202 (300)
Q Consensus 149 ~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (300)
...+|..+|..+..++.||+........++....++.-..--.++...+++...
T Consensus 10 aIl~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~~~~~~vi~slv 63 (226)
T PF04474_consen 10 AILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKGQNPLLVILSLV 63 (226)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHccCccHHHHHHHH
Confidence 345677788888888888887666666666666665554444445544443333
No 358
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=30.82 E-value=1.3e+02 Score=19.79 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.2
Q ss_pred hhhhhc
Q 022246 160 TGGSLA 165 (300)
Q Consensus 160 ~~g~ls 165 (300)
+.|++.
T Consensus 26 i~Gy~~ 31 (76)
T PF06645_consen 26 IVGYIT 31 (76)
T ss_pred HHHHHH
Confidence 333333
No 359
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=30.75 E-value=37 Score=28.56 Aligned_cols=56 Identities=9% Similarity=0.028 Sum_probs=34.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhhhc---cC-CCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246 226 EIRGALGSVNQLFICVGILAALVAGLPL---AG-NPLWWRTMFGLAAIPSILLALGMGLS 281 (300)
Q Consensus 226 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~~w~~~f~~~~~~~~~~~~~~~~~ 281 (300)
++|+....+...+..+|.++..+..-.. .+ ....|++.+.+.+.+.++-+++++.+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666667777788876543332111 11 12469999999888877666655443
No 360
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=30.59 E-value=4.2e+02 Score=25.23 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHH
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTF 174 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~ 174 (300)
|+..-++.+|...|+-+..-+.. .|-+..+
T Consensus 453 GL~lFla~vG~~aG~~f~~~l~~-~G~~~~~ 482 (562)
T TIGR03802 453 GLALFIAVVGLSAGPQAVTAIKE-MGLTLFL 482 (562)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHH-hhHHHHH
Confidence 56666666776666666666643 5554443
No 361
>PRK10692 hypothetical protein; Provisional
Probab=30.33 E-value=1.8e+02 Score=19.78 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=7.9
Q ss_pred chHHHHHHhHHHHHHHH
Q 022246 170 RTRTFQLDAVPLAAGAF 186 (300)
Q Consensus 170 rr~~~~~~~~~~~~~~~ 186 (300)
||...++|-++++++++
T Consensus 3 Rk~a~~~GN~lMglGmv 19 (92)
T PRK10692 3 RKNASLLGNVLMGLGLV 19 (92)
T ss_pred chhhHHHhhHHHHHHHH
Confidence 44444555444444433
No 362
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=29.55 E-value=79 Score=22.40 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=19.0
Q ss_pred CchHHHHHHhHHHHHH-HHHHhhcCCCCh
Q 022246 258 LWWRTMFGLAAIPSIL-LALGMGLSPESP 285 (300)
Q Consensus 258 ~~w~~~f~~~~~~~~~-~~~~~~~~pe~~ 285 (300)
.+|..+|++...++++ +.+.+.+.|++.
T Consensus 57 e~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 57 EGWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5788888876666544 445566678875
No 363
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=29.28 E-value=2.9e+02 Score=23.97 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhhcc
Q 022246 236 QLFICVGILAALVAGLPLA 254 (300)
Q Consensus 236 ~~~~~~g~~~~~~~~~~~~ 254 (300)
......|...||+++..+.
T Consensus 249 vvlGG~Gt~~G~v~Ga~l~ 267 (314)
T COG4177 249 VVLGGAGTLFGALLGAVLV 267 (314)
T ss_pred HHHcCccccHHHHHHHHHH
Confidence 3334446677887777664
No 364
>COG4769 Predicted membrane protein [Function unknown]
Probab=28.81 E-value=1.4e+02 Score=23.18 Aligned_cols=52 Identities=13% Similarity=0.023 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 022246 150 LLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG 207 (300)
Q Consensus 150 ~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 207 (300)
+.+..++.....-++..++|.|.+-.+|.- ..-++.+|..++++.+++.+-.
T Consensus 82 ~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS------~mGaF~hNl~QLivas~Lv~~~ 133 (181)
T COG4769 82 YSFAGAILSTLFMYFLYQFGPKYLSLLGIS------VMGAFTHNLGQLIVASFLVFTT 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEeeeehh------hHHHHHHhHHHHHHHHHHHhcc
Confidence 333444555556677778888776333322 2345678888888888876543
No 365
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=28.64 E-value=1.3e+02 Score=17.76 Aligned_cols=34 Identities=12% Similarity=-0.218 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246 241 VGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (300)
Q Consensus 241 ~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~ 275 (300)
+|+.++..+.+.+... .++.+.-++.+++..+.+
T Consensus 6 iGa~vGg~l~~~lg~~-~~~~~~~~i~aviGAiil 39 (48)
T PF04226_consen 6 IGAFVGGWLFGLLGIN-GGGSWGSFIVAVIGAIIL 39 (48)
T ss_pred HHHHHHHHHHHHhccc-CCchHHHHHHHHHHHHHH
Confidence 3444444444443322 334444445555444433
No 366
>COG5547 Small integral membrane protein [Function unknown]
Probab=28.50 E-value=1.5e+02 Score=18.36 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=7.3
Q ss_pred HHHHHHhHHHHHHHHHH
Q 022246 172 RTFQLDAVPLAAGAFLC 188 (300)
Q Consensus 172 ~~~~~~~~~~~~~~~~~ 188 (300)
+.++.+++...++...+
T Consensus 9 ypIIgglvglliAili~ 25 (62)
T COG5547 9 YPIIGGLVGLLIAILIL 25 (62)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 33444444444444333
No 367
>PRK12996 ulaA PTS system ascorbate-specific transporter subunit IIC; Reviewed
Probab=27.85 E-value=4.9e+02 Score=24.03 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHH-HHHHHHHHHHHHHHhh
Q 022246 192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV-NQLFICVGILAALVAG 250 (300)
Q Consensus 192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~ 250 (300)
+++...++.-++.|+.....-...+.+.-+....+ +.++|- -..+..++..+|..++
T Consensus 146 ~~~~~Ii~g~l~lG~y~~v~pal~~~~~~kiTg~d--~~aiGH~~~~g~~~s~~ig~~~G 203 (463)
T PRK12996 146 EGVGLVFTGSLILGLVMAFFPALAQRYMRRITGTD--DIAFGHFGTLGYVLSGWIGSLCG 203 (463)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC--CeEEEehhhHHHHHHHHHHHHhC
Confidence 44555566667777776665555555666665433 455553 3333344445555544
No 368
>COG1288 Predicted membrane protein [Function unknown]
Probab=27.74 E-value=54 Score=29.74 Aligned_cols=39 Identities=5% Similarity=-0.249 Sum_probs=24.5
Q ss_pred HHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246 242 GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 242 g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
+..++.-++|.-.....+||...|+...+..+..+.++.
T Consensus 200 ~~~IAq~iAGip~~sG~~~Riv~~v~~~~~~i~y~~~Ya 238 (481)
T COG1288 200 ATVIAQNIAGIPFLSGMGLRIVVWVVFTLISIIYVYWYA 238 (481)
T ss_pred HHHHHhhhcCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443334488999999988777666665544
No 369
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=27.68 E-value=4.9e+02 Score=23.96 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhhHHHHHHHhCC-ChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH
Q 022246 115 LFGYHLGVVNGALEYLAKDLGI-AENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL 176 (300)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~ 176 (300)
+..|.....+....++..++|. +... .+...++.+........+-.+.||..|--++..
T Consensus 112 l~aY~~~itn~l~sfl~~ql~~~~~~r---~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~ 171 (443)
T PRK13629 112 LWIYGVTITNTFMTFWENQLGFAPLNR---GFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPF 171 (443)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcCCccH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333434444455556666 3322 222333333333333456678888876554443
No 370
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=26.90 E-value=2.4e+02 Score=22.94 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH
Q 022246 150 LLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202 (300)
Q Consensus 150 ~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (300)
..+|..+|..+..++.||+-+--+-..|+....++.-+..-++|....++.-+
T Consensus 12 Il~G~iiG~l~~~klper~k~~l~~~~Gl~~l~iGI~m~~~~~n~~~~ilslv 64 (228)
T COG1811 12 ILIGGIIGLLIGKKLPERIKDILMQCLGLAILGIGIKMALQAKNDIMILLALV 64 (228)
T ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 34566777777777888886555555666666666655566667665554443
No 371
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=26.84 E-value=4.6e+02 Score=23.35 Aligned_cols=67 Identities=7% Similarity=0.071 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHH---HHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA---GAFLCATAQSVQTMIIGRVLAGIGIGIS 211 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~l~G~~~~~~ 211 (300)
|.+.....+...+ .++.+++.+.+|--+.+..++++..= ..+...++.|....+..-.+.|--.|++
T Consensus 51 GI~~laP~ls~~l-~~ii~Pi~~~lgaDpsmfa~siLA~DMGGY~LA~~la~~~~~~~fsG~ilgsmlG~T 120 (372)
T PRK15086 51 GIMALAPVLAHVL-GPVIIPIYEALGADPSMFATTLLAVDMGGYQLAKELAGDPEAWLFSGLILGSMMGAT 120 (372)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHhCCCHHHHHHHHHHhcCcCHHHHHHHhcChhhHHHHHHHHHHhccce
Confidence 4444455554444 35567888889999988877666432 2344555666655555555555544443
No 372
>PRK10457 hypothetical protein; Provisional
Probab=26.25 E-value=2.1e+02 Score=19.25 Aligned_cols=38 Identities=8% Similarity=-0.125 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhhhccCC-CCchHHHHHHhHHHHHHH
Q 022246 237 LFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILL 274 (300)
Q Consensus 237 ~~~~~g~~~~~~~~~~~~~~-~~~w~~~f~~~~~~~~~~ 274 (300)
....+|++++..++..+... ..+|.+.-++.++...+.
T Consensus 34 ilGiiGA~iGg~l~~~~g~~~~~g~~~~~~i~aviGAii 72 (82)
T PRK10457 34 ILGIVGAVVGGWISTFFGFGKVDGFNFGSFVVAVIGAIV 72 (82)
T ss_pred HHHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHH
Confidence 34455667777666554321 134444334444444333
No 373
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=25.30 E-value=5.1e+02 Score=23.42 Aligned_cols=104 Identities=10% Similarity=0.144 Sum_probs=53.6
Q ss_pred hHHHHH-HHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022246 126 ALEYLA-KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (300)
Q Consensus 126 ~~~~~~-~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 204 (300)
..|.+. ... +++++. ..+.+...+...++.++-+....+.-|-+......+.+....+......++...+..-++.
T Consensus 24 ~~p~iv~~~~-l~~~~~--~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~~~~~~~~~~g~~i~~ 100 (415)
T TIGR00801 24 LVPLLVGLAP-LSAEQT--QYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIGSGLGIPAIMGALIAT 100 (415)
T ss_pred HHHHHHhccc-CCHHHH--HHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 444433 344 777776 7788888888889988888776543222332222222222222222222344444444444
Q ss_pred HHhhhhhhh----hhhhhhhccCCcccchhhH
Q 022246 205 GIGIGISSA----IVPLYISEISPTEIRGALG 232 (300)
Q Consensus 205 G~~~~~~~~----~~~~~~~~~~~~~~r~~~~ 232 (300)
|+....... .....+.+.+|+...+...
T Consensus 101 gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv 132 (415)
T TIGR00801 101 GLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVV 132 (415)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCCchhHHHhH
Confidence 444332221 1223557888888776533
No 374
>PRK11715 inner membrane protein; Provisional
Probab=24.95 E-value=5.4e+02 Score=23.60 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=6.7
Q ss_pred hhccccCchHHHHH
Q 022246 163 SLADKFGRTRTFQL 176 (300)
Q Consensus 163 ~lsd~~Grr~~~~~ 176 (300)
-+|+.+|--..+++
T Consensus 350 SlSEHigF~~AYli 363 (436)
T PRK11715 350 SLSEHIGFTLAYLI 363 (436)
T ss_pred HHHhhhchHHHHHH
Confidence 35555554444443
No 375
>PRK04972 putative transporter; Provisional
Probab=24.71 E-value=5.7e+02 Score=24.33 Aligned_cols=109 Identities=11% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 022246 143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222 (300)
Q Consensus 143 ~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 222 (300)
.++...+|.+|.-.|+-++.-+-. .-.+.++.+.+...+..+.......+..+=.......++.+...+.......|.
T Consensus 64 ~gl~lF~~~vG~~~Gp~F~~~l~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~~a~~~ 141 (558)
T PRK04972 64 LGFMLFIFCVGVEAGPNFFSIFFR--DGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDT 141 (558)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccccCcHHHHHHHHH
Q ss_pred CCc------------ccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246 223 SPT------------EIRGALGSVNQLFICVGILAALVAGLPL 253 (300)
Q Consensus 223 ~~~------------~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 253 (300)
... .+-+.+.+..+....++.++-......+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~vgYa~~y~~g~i~~i~~~~~~p~l 184 (558)
T PRK04972 142 LRHSGAESRQLSLALDNLSLGYALTYLIGLVSLIVGARYLPKL 184 (558)
T ss_pred HhccCccccchhcccCccchhHHhHHHHHHHHHHHHHHHHHHH
No 376
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=23.64 E-value=2.3e+02 Score=19.17 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=7.2
Q ss_pred chHHHHHHhHHHHHHH
Q 022246 170 RTRTFQLDAVPLAAGA 185 (300)
Q Consensus 170 rr~~~~~~~~~~~~~~ 185 (300)
||...++|-+++++++
T Consensus 3 Rk~a~~~GN~lMglGm 18 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGM 18 (89)
T ss_pred chhhHHHhhHHHHHhH
Confidence 4444444444444443
No 377
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=23.60 E-value=5.2e+02 Score=25.72 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=13.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccC
Q 022246 200 GRVLAGIGIGISSAIVPLYISEIS 223 (300)
Q Consensus 200 ~~~l~G~~~~~~~~~~~~~~~~~~ 223 (300)
+-+..|.+.|+...+...++.-+.
T Consensus 189 ~a~~gG~~~Gaa~Gv~~Gli~~l~ 212 (764)
T TIGR02865 189 ISYIGGSGAGAAGGVVIGVILGLA 212 (764)
T ss_pred HHHhcCchHhHHHHHHHHHHHHhc
Confidence 334556666666666665555554
No 378
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.43 E-value=2.7e+02 Score=20.02 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=9.1
Q ss_pred hhccccCchHHHHHH
Q 022246 163 SLADKFGRTRTFQLD 177 (300)
Q Consensus 163 ~lsd~~Grr~~~~~~ 177 (300)
+|.||.++-++..-|
T Consensus 3 fLp~RLN~ePvV~rG 17 (111)
T TIGR03750 3 FLPDRLNREPVVFRG 17 (111)
T ss_pred CCchhhcCCCceecc
Confidence 456777776665444
No 379
>PHA02844 putative transmembrane protein; Provisional
Probab=23.40 E-value=94 Score=20.36 Aligned_cols=16 Identities=13% Similarity=-0.019 Sum_probs=7.9
Q ss_pred chHHHHHHhHHHHHHH
Q 022246 259 WWRTMFGLAAIPSILL 274 (300)
Q Consensus 259 ~w~~~f~~~~~~~~~~ 274 (300)
++.|..++..++.+++
T Consensus 45 ~~~~~~~ii~i~~v~~ 60 (75)
T PHA02844 45 SSSTKIWILTIIFVVF 60 (75)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 4555555555544443
No 380
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=22.95 E-value=5e+02 Score=22.48 Aligned_cols=92 Identities=13% Similarity=-0.057 Sum_probs=46.8
Q ss_pred HHhhhhhhccccCchHHHHHHhHHHHHHHH-HHHH-hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHH
Q 022246 157 GSFTGGSLADKFGRTRTFQLDAVPLAAGAF-LCAT-AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV 234 (300)
Q Consensus 157 ~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 234 (300)
..-+++.++||-|.-.+=+=|..+.+.... ...+ ..++|.=++ .+...|...+...++++.....++--.+.++
T Consensus 23 laaLG~l~sERsGVlNIglEG~M~~gAf~~~~~~~~t~spw~gl~----~a~l~g~l~~ll~a~~ti~l~~nqiisG~al 98 (304)
T COG1079 23 LAALGGLFSERSGVLNIGLEGIMLLGAFSGALFAYGTGSPWLGLL----AAALVGALFGLLHAFLTIKLRANQIISGLAL 98 (304)
T ss_pred HHHHHHHHHHHhceeeechhhHHHHHHHHHHHHHHccccHHHHHH----HHHHHHHHHHHHHHHHHHhhccccchhHHHH
Confidence 344577888888765543323332222222 1121 334443333 3333444555666666666665655566666
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 022246 235 NQLFICVGILAALVAGLP 252 (300)
Q Consensus 235 ~~~~~~~g~~~~~~~~~~ 252 (300)
...+..+...++-.+.+.
T Consensus 99 nl~a~Glt~fl~~~~~~~ 116 (304)
T COG1079 99 NLLASGLTAFLGQSIFGQ 116 (304)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 666666665555444433
No 381
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=22.83 E-value=3.9e+02 Score=27.28 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=16.8
Q ss_pred HHHHhhhhhHHHHHHHhCCChhhh
Q 022246 118 YHLGVVNGALEYLAKDLGIAENTV 141 (300)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~s~~~~ 141 (300)
...-.+.+.+..+.+.+++++..+
T Consensus 474 v~dDyFVPSLe~IAekLgLSE~VA 497 (1096)
T TIGR00927 474 VCDEYFVPALGVITDKLQISEDVA 497 (1096)
T ss_pred HHHHHhHHHHHHHHHHhCCcHhhh
Confidence 333445567778889999987765
No 382
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=22.61 E-value=3.8e+02 Score=20.95 Aligned_cols=57 Identities=21% Similarity=0.151 Sum_probs=29.7
Q ss_pred HHHHHhhhhhhcccc-CchHHHHHHhHHHHHHHHHHH-Hh-----------hhHHHHHHHHHHHHHhhhh
Q 022246 154 ATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCA-TA-----------QSVQTMIIGRVLAGIGIGI 210 (300)
Q Consensus 154 ~~i~~~~~g~lsd~~-Grr~~~~~~~~~~~~~~~~~~-~~-----------~~~~~l~~~~~l~G~~~~~ 210 (300)
+.+++++.-.+-.|+ |.-+-++.|.+++++..++.. +. ++...-+....+.|++.|-
T Consensus 81 Si~aAllY~~~l~k~~g~W~Gi~YG~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~CiyiLyGlFIGY 150 (173)
T PF11085_consen 81 SIVAALLYYALLKKFKGPWPGILYGLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCIYILYGLFIGY 150 (173)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcccccCChhhhhCchhHHHHHHHHHHHHHHHhce
Confidence 344444444443333 455556777777776665542 11 2333344455677777653
No 383
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=22.33 E-value=3.8e+02 Score=20.85 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhh-HHHHHHHHHHHH-Hhhhhhhhhhhhhhhc
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS-VQTMIIGRVLAG-IGIGISSAIVPLYISE 221 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~l~G-~~~~~~~~~~~~~~~~ 221 (300)
++..-++.+|.-.|+-+..-+.+. |-|.. +.+.+...+..+....... +--+=.. ...| +..+...+.......|
T Consensus 59 GL~lFl~~VGl~aG~~F~~~l~~~-G~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~-~~~G~~aGa~T~tp~L~~A~~ 135 (169)
T PF06826_consen 59 GLALFLAAVGLSAGPGFFSSLKRG-GLKLL-LLGVIITLVPLLIALVIGRYLFKLNPG-IAAGILAGALTSTPALAAAQE 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHccccCcHHHHHHHH
Confidence 677777888888887777776655 55544 3344443333333222111 1000011 1233 3334456677777777
Q ss_pred cCC
Q 022246 222 ISP 224 (300)
Q Consensus 222 ~~~ 224 (300)
...
T Consensus 136 ~~~ 138 (169)
T PF06826_consen 136 AIS 138 (169)
T ss_pred hhh
Confidence 733
No 384
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=22.14 E-value=6.1e+02 Score=23.21 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=10.3
Q ss_pred hhhhccccCchHHHHHHhH
Q 022246 161 GGSLADKFGRTRTFQLDAV 179 (300)
Q Consensus 161 ~g~lsd~~Grr~~~~~~~~ 179 (300)
.=-+|+.+|--..++++.+
T Consensus 342 LLSlSEhi~F~~AYliAa~ 360 (430)
T PF06123_consen 342 LLSLSEHIGFNLAYLIAAL 360 (430)
T ss_pred HHHHHhhhchHHHHHHHHH
Confidence 3346666666555554433
No 385
>PTZ00370 STEVOR; Provisional
Probab=22.01 E-value=1.3e+02 Score=25.65 Aligned_cols=23 Identities=9% Similarity=-0.093 Sum_probs=12.0
Q ss_pred CchHHHHHHhHHHHHHHHHHhhc
Q 022246 258 LWWRTMFGLAAIPSILLALGMGL 280 (300)
Q Consensus 258 ~~w~~~f~~~~~~~~~~~~~~~~ 280 (300)
.+|..+-++..++.++.++++.+
T Consensus 255 ~Pygiaalvllil~vvliilYiw 277 (296)
T PTZ00370 255 YPYGIAALVLLILAVVLIILYIW 277 (296)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544433
No 386
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=21.98 E-value=81 Score=19.81 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=14.8
Q ss_pred chHHHHHHhHHHHHH----HHHHhhcCCCCh
Q 022246 259 WWRTMFGLAAIPSIL----LALGMGLSPESP 285 (300)
Q Consensus 259 ~w~~~f~~~~~~~~~----~~~~~~~~pe~~ 285 (300)
-+|..|.+..++... -+++++++|+.+
T Consensus 30 ~vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 30 LVRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 357777766665422 233445577654
No 387
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=21.58 E-value=1.1e+02 Score=27.26 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=16.1
Q ss_pred HHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 022246 130 LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD 166 (300)
Q Consensus 130 ~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd 166 (300)
+++.+|++..+. ...+...+|...|.++++++..
T Consensus 147 fe~~~G~~~a~~---vg~a~AT~Glv~G~liGgpi~~ 180 (368)
T PF03616_consen 147 FEELYGWEGATS---VGMAAATFGLVVGGLIGGPIAN 180 (368)
T ss_pred HHHhcChhhhHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 333447654443 3444444554445555544443
No 388
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.56 E-value=4e+02 Score=24.59 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcc----cc-CchHH
Q 022246 144 GWIVSSLLAGATVGSFTGGSLAD----KF-GRTRT 173 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd----~~-Grr~~ 173 (300)
|-+.+...+.+++.+++.|+.+. |. ||||+
T Consensus 326 Gal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wi 360 (593)
T KOG1277|consen 326 GALLSAAIVVYALTSPINGYVSGSFYARLGGRRWI 360 (593)
T ss_pred hHHHHHHHHHHHhcccccccccceeeehhccHHHH
Confidence 44455555556666666655544 55 45553
No 389
>PHA03054 IMV membrane protein; Provisional
Probab=21.35 E-value=1.1e+02 Score=19.81 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=8.1
Q ss_pred chHHHHHHhHHHHHHH
Q 022246 259 WWRTMFGLAAIPSILL 274 (300)
Q Consensus 259 ~w~~~f~~~~~~~~~~ 274 (300)
+|.|..++..++.+++
T Consensus 45 ~~~~~~~ii~l~~v~~ 60 (72)
T PHA03054 45 CWGWYWLIIIFFIVLI 60 (72)
T ss_pred CchHHHHHHHHHHHHH
Confidence 4555555555544443
No 390
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=21.08 E-value=5.9e+02 Score=22.61 Aligned_cols=101 Identities=20% Similarity=0.128 Sum_probs=57.0
Q ss_pred HHHHHhhhhhhccccC--chHHHHHHhHHHHHHHHHHHH--hhhH-------------HH--HHHH---H-HHHHHhhhh
Q 022246 154 ATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFLCAT--AQSV-------------QT--MIIG---R-VLAGIGIGI 210 (300)
Q Consensus 154 ~~i~~~~~g~lsd~~G--rr~~~~~~~~~~~~~~~~~~~--~~~~-------------~~--l~~~---~-~l~G~~~~~ 210 (300)
.++.++++-.+.|..| ++..+..+..+.+++.++... ..|+ .. -.+. | .+.|+..+.
T Consensus 176 AI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~qsl 255 (354)
T PF05631_consen 176 AIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQSL 255 (354)
T ss_pred HHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 3444555556666654 566677776666666554432 1111 10 0111 1 466777777
Q ss_pred hhhhhhhhhhccCCccc---chhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246 211 SSAIVPLYISEISPTEI---RGALGSVNQLFICVGILAALVAGLPLA 254 (300)
Q Consensus 211 ~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~ 254 (300)
....++..+-.|.|.-+ +..-.|+......+..++|..+...+.
T Consensus 256 FE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~ 302 (354)
T PF05631_consen 256 FEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLL 302 (354)
T ss_pred HHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888887533 345556655555555666665554433
No 391
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=20.93 E-value=32 Score=29.58 Aligned_cols=78 Identities=13% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhh---ccCC-CCchHHHHHHhHHHHHHHHHH
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP---LAGN-PLWWRTMFGLAAIPSILLALG 277 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~~w~~~f~~~~~~~~~~~~~ 277 (300)
++.|++.+......+++.+. +|++.. ..+..|..+++++..++--. ..+. ..+-...|.+..++.+++++.
T Consensus 5 ~~~~~~~~~~q~s~~glas~-~p~~y~----~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~~ 79 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASL-FPPKYT----QAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCIIL 79 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhc-CCHHHH----HHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHHH
Confidence 44566666666666666665 554432 23333344444443333221 1111 112233444444444555555
Q ss_pred hhcCCCC
Q 022246 278 MGLSPES 284 (300)
Q Consensus 278 ~~~~pe~ 284 (300)
++.+++.
T Consensus 80 ~~~l~~~ 86 (309)
T PF01733_consen 80 YFILPRS 86 (309)
T ss_dssp -------
T ss_pred HHHhccC
Confidence 5555443
No 392
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=20.84 E-value=6.9e+02 Score=23.83 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhh---hhhhhhhhhhhccCCcccc---hhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHH---HHhH
Q 022246 198 IIGRVLAGIGIG---ISSAIVPLYISEISPTEIR---GALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF---GLAA 268 (300)
Q Consensus 198 ~~~~~l~G~~~~---~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f---~~~~ 268 (300)
+...++.|++.. +..|+......-+...++| .++.++...-....+....+++........+|+..+ |+.+
T Consensus 170 ll~afl~GLlL~ftPCVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P~vl~ 249 (569)
T COG4232 170 LLLAFLGGLLLNFTPCVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQPWVLG 249 (569)
T ss_pred HHHHHHHHHHHhhccHhhhhHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHcccHHHH
Q ss_pred HHHHHHHHHhh
Q 022246 269 IPSILLALGMG 279 (300)
Q Consensus 269 ~~~~~~~~~~~ 279 (300)
.++++.+++.+
T Consensus 250 ~la~lf~llAL 260 (569)
T COG4232 250 GLAALFVLLAL 260 (569)
T ss_pred HHHHHHHHHHH
No 393
>PHA02819 hypothetical protein; Provisional
Probab=20.72 E-value=1.2e+02 Score=19.69 Aligned_cols=16 Identities=6% Similarity=0.235 Sum_probs=8.0
Q ss_pred chHHHHHHhHHHHHHH
Q 022246 259 WWRTMFGLAAIPSILL 274 (300)
Q Consensus 259 ~w~~~f~~~~~~~~~~ 274 (300)
+|.|..++..++.+++
T Consensus 43 ~~~~~~~ii~l~~~~~ 58 (71)
T PHA02819 43 SFLRYYLIIGLVTIVF 58 (71)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 4555555555444443
No 394
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=20.64 E-value=1e+03 Score=25.15 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 022246 193 SVQTMIIGRVLAGIGIGISSAIVPLYIS 220 (300)
Q Consensus 193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~ 220 (300)
|...++.+-.-.|++.....-+...+..
T Consensus 1018 naVS~vnLimsIGisVefsaHI~~~F~~ 1045 (1145)
T TIGR00918 1018 SAIPVVILIASVGIGVEFTVHIALGFLT 1045 (1145)
T ss_pred cHHHHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 4444444444466665555555555554
No 395
>TIGR00930 2a30 K-Cl cotransporter.
Probab=20.48 E-value=9.4e+02 Score=24.74 Aligned_cols=7 Identities=14% Similarity=0.378 Sum_probs=3.1
Q ss_pred chHHHHH
Q 022246 259 WWRTMFG 265 (300)
Q Consensus 259 ~w~~~f~ 265 (300)
+|...++
T Consensus 518 ~w~~ali 524 (953)
T TIGR00930 518 SWWAALV 524 (953)
T ss_pred HHHHHHH
Confidence 4644333
No 396
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=20.22 E-value=5.7e+02 Score=22.11 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=26.1
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246 222 ISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (300)
Q Consensus 222 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 276 (300)
-.|+++|.++.-+-..+..+--.+--.++..+.+. +.|.+++.++..+-...
T Consensus 91 ~vP~~~q~rvL~~Gi~gAlvlR~i~i~~g~~Li~~---f~wi~~ifG~fLi~~a~ 142 (302)
T TIGR03718 91 AVPREYQHRVLFWGILGALVLRAIFIALGAALIEQ---FHWVLYIFGAFLLYTGI 142 (302)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHH
Confidence 45777776655543333333333333444444433 44567766665544444
No 397
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=20.22 E-value=1.1e+02 Score=27.55 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=21.5
Q ss_pred HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 022246 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD 166 (300)
Q Consensus 128 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd 166 (300)
+.+.+++|++..+. ...+...+|...|.+++|++..
T Consensus 145 ~~f~e~~G~~~a~~---lgla~AT~GLv~g~liGgpi~~ 180 (398)
T TIGR00210 145 PVFYDNYGFRNATE---IAIACATFGLVFGGIIGGPVAK 180 (398)
T ss_pred HHHHHHcCchhHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44545678776554 4556666666666666665554
No 398
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=20.14 E-value=3.9e+02 Score=22.44 Aligned_cols=23 Identities=22% Similarity=0.014 Sum_probs=17.5
Q ss_pred HHHhhhhhhccccCchHHHHHHh
Q 022246 156 VGSFTGGSLADKFGRTRTFQLDA 178 (300)
Q Consensus 156 i~~~~~g~lsd~~Grr~~~~~~~ 178 (300)
-|.|..|-+.|-.+--+++++-.
T Consensus 221 PGaPP~G~~iD~~~vlW~~i~l~ 243 (256)
T PF14494_consen 221 PGAPPIGSWIDFAGVLWVLIALV 243 (256)
T ss_pred CCCCCCcceEeeeehHHHHHHHH
Confidence 57788899999998777665433
Done!