Query 022246
Match_columns 300
No_of_seqs 282 out of 2505
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 16:19:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 3.1E-25 1.1E-29 201.6 19.1 198 100-297 8-236 (491)
2 3o7q_A L-fucose-proton symport 99.9 1.5E-23 5.1E-28 187.6 20.2 182 103-286 25-236 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.9 1.8E-24 6.2E-29 194.2 11.8 184 100-287 24-213 (451)
4 2gfp_A EMRD, multidrug resista 99.9 9E-23 3.1E-27 179.1 14.8 178 107-287 3-181 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 3.3E-21 1.1E-25 175.1 15.2 153 124-279 34-194 (491)
6 2xut_A Proton/peptide symporte 99.8 1.3E-19 4.6E-24 165.9 17.8 154 124-280 33-197 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.7 6.5E-17 2.2E-21 144.8 15.2 157 123-282 271-434 (451)
8 2cfq_A Lactose permease; trans 99.6 2.1E-15 7.1E-20 134.3 12.8 143 144-287 262-406 (417)
9 3o7q_A L-fucose-proton symport 99.6 4.4E-15 1.5E-19 132.5 14.8 153 124-282 279-433 (438)
10 4gc0_A D-xylose-proton symport 99.6 1.2E-15 4.1E-20 138.3 6.5 166 120-287 293-469 (491)
11 2cfq_A Lactose permease; trans 99.6 7.2E-16 2.5E-20 137.3 2.5 154 126-283 30-189 (417)
12 4aps_A DI-OR tripeptide H+ sym 99.5 9.2E-14 3.1E-18 125.9 12.2 158 126-287 306-478 (491)
13 2gfp_A EMRD, multidrug resista 99.2 2.2E-12 7.6E-17 112.7 3.5 136 127-268 223-363 (375)
14 2xut_A Proton/peptide symporte 99.1 1.8E-10 6.2E-15 105.1 10.4 142 144-285 338-507 (524)
15 2g9p_A Antimicrobial peptide l 50.5 3.6 0.00012 19.2 0.1 14 160-173 2-15 (26)
16 4dve_A Biotin transporter BIOY 38.2 43 0.0015 25.7 4.6 25 147-171 99-123 (198)
17 3arc_T Photosystem II reaction 36.1 42 0.0015 17.2 2.8 11 276-286 18-28 (32)
18 4aw6_A CAAX prenyl protease 1 34.4 2.4E+02 0.0084 24.9 10.2 59 130-190 149-214 (482)
19 4ev6_A Magnesium transport pro 23.3 40 0.0014 28.2 2.3 17 258-274 309-325 (339)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.93 E-value=3.1e-25 Score=201.61 Aligned_cols=198 Identities=33% Similarity=0.571 Sum_probs=171.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCh------hhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHH
Q 022246 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAE------NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173 (300)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~ 173 (300)
+..+.+.++++++.++.+++.++++..++.+.++++.+. .....+++.+.+.+|.++|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 445666677788889999999999999999999885432 12234889999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHH------------------HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHH
Q 022246 174 FQLDAVPLAAGAFLCA------------------TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 235 (300)
Q Consensus 174 ~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 235 (300)
++++.+++.++.++++ +++|+++++++|+++|++.|+..+....+++|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999998 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCC-------CCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcCcccc
Q 022246 236 QLFICVGILAALVAGLPLAGN-------PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDYI 297 (300)
Q Consensus 236 ~~~~~~g~~~~~~~~~~~~~~-------~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~ 297 (300)
..+..+|.++++.++..+... ..+||+.+.+..+..++..+..+++||+|+++..+++.++.
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a 236 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQA 236 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHH
Confidence 999999999888887665431 24689999988888888888889999999999888776554
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=1.5e-23 Score=187.61 Aligned_cols=182 Identities=18% Similarity=0.203 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~ 182 (300)
+..+..+++..+..++......+..|.+.+++|++..+. +++.+++.++..++.+++|+++||+|||++++.+.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 344555566667777777788889999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc-CCCC
Q 022246 183 AGAFLC---ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-GNPL 258 (300)
Q Consensus 183 ~~~~~~---~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ 258 (300)
++.+++ +++++++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.+++|++++.+. ....
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998 888999999999999999999999999999999999999999999999999999999999999987 5423
Q ss_pred c------------------------hHHHHHHhHHHHHHHHHHhhc--CCCChh
Q 022246 259 W------------------------WRTMFGLAAIPSILLALGMGL--SPESPR 286 (300)
Q Consensus 259 ~------------------------w~~~f~~~~~~~~~~~~~~~~--~pe~~~ 286 (300)
. ||+.|++.+++.++..+++++ .||+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 3 999998887777665554433 466543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.91 E-value=1.8e-24 Score=194.21 Aligned_cols=184 Identities=17% Similarity=0.131 Sum_probs=165.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhH
Q 022246 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (300)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~ 179 (300)
+.++..+...++..+...+....+.+..|.+.+++ .+..+. +++.+++.++..++.+++|+++||+|||++++++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 44566677777888888888888888999999999 998888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246 180 PLAAGAFLCAT----AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (300)
Q Consensus 180 ~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 255 (300)
+.+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCc-hHHHHHHhHHHHHHHHH-HhhcCCCChhH
Q 022246 256 NPLW-WRTMFGLAAIPSILLAL-GMGLSPESPRW 287 (300)
Q Consensus 256 ~~~~-w~~~f~~~~~~~~~~~~-~~~~~pe~~~~ 287 (300)
. .+ ||+.|++.+++.++..+ ..+++||+++.
T Consensus 181 ~-~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 181 W-FNDWHAALYMPAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp H-TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred H-hccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence 5 66 99999999988866554 45667877654
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=9e-23 Score=179.14 Aligned_cols=178 Identities=17% Similarity=0.197 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (300)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~ 186 (300)
..+++..+...+....+.+..|.+.+++|.+..+. +++.+++.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 34455666677777788888999999999999888 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHH
Q 022246 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL 266 (300)
Q Consensus 187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~ 266 (300)
+.+++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+.+. .+||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-WNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-ccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765 789999999
Q ss_pred hHHHHHHHHH-HhhcCCCChhH
Q 022246 267 AAIPSILLAL-GMGLSPESPRW 287 (300)
Q Consensus 267 ~~~~~~~~~~-~~~~~pe~~~~ 287 (300)
.+++.++..+ ..+++||+++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHCcccCCC
Confidence 8888776665 45567887654
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.86 E-value=3.3e-21 Score=175.07 Aligned_cols=153 Identities=20% Similarity=0.131 Sum_probs=138.7
Q ss_pred hhhHHHHHHH-----hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc-cCchHHHHHHhHHHHHHHHHHHHhhhHHHH
Q 022246 124 NGALEYLAKD-----LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQSVQTM 197 (300)
Q Consensus 124 ~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (300)
....+++.++ +|++..+. +++.+++.++..++++++|+++|| +|||++++.+.++.+++.++++++++++.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL 111 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHH
T ss_pred HHHHHHHHhccchhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4466677777 99999888 999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccCCccc--chhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246 198 IIGRVLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (300)
Q Consensus 198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~ 275 (300)
+++|++.|++.+...+...+++.|++|+++ |+.++++++.+..+|..++|.+++.+.+. .+||+.|++.++..++..
T Consensus 112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-AGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 77888889999999999999999998776 789999999887776655
Q ss_pred HHhh
Q 022246 276 LGMG 279 (300)
Q Consensus 276 ~~~~ 279 (300)
+..+
T Consensus 191 ~~~~ 194 (491)
T 4aps_A 191 LVYY 194 (491)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.83 E-value=1.3e-19 Score=165.86 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=138.4
Q ss_pred hhhHHHHHHHhC------CChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-CchHHHHHHhHHHHHHHHHHHHhh-hHH
Q 022246 124 NGALEYLAKDLG------IAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ-SVQ 195 (300)
Q Consensus 124 ~~~~~~~~~~~~------~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~ 195 (300)
....+++.+++| ++..+. +++.+++.++..++.+++|+++||+ |||+++..+.++.+++.+++++++ +++
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ 110 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 445667888899 998888 9999999999999999999999999 999999999999999999999998 999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHH---HHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246 196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV---NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (300)
Q Consensus 196 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 272 (300)
.+++.|++.|++.+...+...+++.|++|+++|+++.+. +..+..+|.+++|.+++.+.+. .+||+.|++.+++.+
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~f~~~~~~~~ 189 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-FGAAVAFGIPGVLMF 189 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999876666 8889999999999999988765 789999999888877
Q ss_pred HHHHHhhc
Q 022246 273 LLALGMGL 280 (300)
Q Consensus 273 ~~~~~~~~ 280 (300)
+..+.+++
T Consensus 190 ~~~~~~~~ 197 (524)
T 2xut_A 190 VATVFFWL 197 (524)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 66555443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.72 E-value=6.5e-17 Score=144.85 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=131.6
Q ss_pred hhhhHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc--CchHHHHHHhHHHH-HHHHHHHHh--hhHHH
Q 022246 123 VNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTFQLDAVPLA-AGAFLCATA--QSVQT 196 (300)
Q Consensus 123 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~ 196 (300)
.....|. +.+.+|.+..+. +++.+...++..++.++.|+++||+ |||+.+..+.++.. ++.++..+. .+.+.
T Consensus 271 ~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (451)
T 1pw4_A 271 ILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 348 (451)
T ss_dssp HHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHH
Confidence 3344454 444589998888 8999999999999999999999999 99999888777766 566665555 36777
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHH-HHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (300)
Q Consensus 197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~ 275 (300)
++++.++.|++.++..+....++.|.+|+++|++++|+.+....+ |..++|.+.+.+.+. .||++.|++.+++.++..
T Consensus 349 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~ 427 (451)
T 1pw4_A 349 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAV 427 (451)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHH
Confidence 788888999998888888899999999999999999999999999 999999999998876 789999999988887776
Q ss_pred HHhhcCC
Q 022246 276 LGMGLSP 282 (300)
Q Consensus 276 ~~~~~~p 282 (300)
++.++++
T Consensus 428 ~~~~~~~ 434 (451)
T 1pw4_A 428 ILLIVVM 434 (451)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.63 E-value=2.1e-15 Score=134.35 Aligned_cols=143 Identities=10% Similarity=0.030 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccC
Q 022246 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~ 223 (300)
++..++..++..++.++.|+++||+|||+++..+.++.++..++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 67777777888889999999999999999999888888887777777778888888888888887777777888999999
Q ss_pred CcccchhhHHH-HHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHh-hcCCCChhH
Q 022246 224 PTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM-GLSPESPRW 287 (300)
Q Consensus 224 ~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~~pe~~~~ 287 (300)
|++.|+++.++ ++....+|.+++|.++|.+.+. .|++..|++.+++.++..+.. ++.||+++.
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 99999999998 5788889999999999988765 679999998888877766654 446665543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.63 E-value=4.4e-15 Score=132.50 Aligned_cols=153 Identities=12% Similarity=0.010 Sum_probs=124.9
Q ss_pred hhhHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH
Q 022246 124 NGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202 (300)
Q Consensus 124 ~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (300)
.+...+ +.+.+|.+..+. ++..+...++..++.+++|+++||+|||+++..+.++.+++.++..+.++.+.++. .+
T Consensus 279 ~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 355 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LT 355 (438)
T ss_dssp HHHHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HH
T ss_pred HHHHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HH
Confidence 445556 566669998888 89999999999999999999999999999999999999998888888887766554 48
Q ss_pred HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc-hHHHHHHhHHHHHHHHHHhhcC
Q 022246 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPSILLALGMGLS 281 (300)
Q Consensus 203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~~ 281 (300)
+.|++.+..++....+..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+. .| ++..|++.+++.++..++.++.
T Consensus 356 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA-AGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH-HTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999976 888888877 5568999999999998876 55 8888887766655554444444
Q ss_pred C
Q 022246 282 P 282 (300)
Q Consensus 282 p 282 (300)
+
T Consensus 433 ~ 433 (438)
T 3o7q_A 433 S 433 (438)
T ss_dssp C
T ss_pred H
Confidence 3
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.58 E-value=1.2e-15 Score=138.34 Aligned_cols=166 Identities=17% Similarity=0.062 Sum_probs=120.0
Q ss_pred HHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-----hhH
Q 022246 120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSV 194 (300)
Q Consensus 120 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~ 194 (300)
...+....+.+.+..+.+.... ........++..++.++.+++.||+|||+.++.+..+.+++.+..+.. ++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 370 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 370 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH
Confidence 3455557788888888877666 566777778888999999999999999999999888888777665542 122
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC-----CCchHHHHHHhHH
Q 022246 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-----PLWWRTMFGLAAI 269 (300)
Q Consensus 195 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~w~~~f~~~~~ 269 (300)
..++...++.+....+..++.+.+.+|.+|++.|++++|+......+|+++++.+.+.+... ..++.+.|++.++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~ 450 (491)
T 4gc0_A 371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC 450 (491)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 22222222222222334567788999999999999999999999999998888776665431 1235567788777
Q ss_pred HHHHHHH-HhhcCCCChhH
Q 022246 270 PSILLAL-GMGLSPESPRW 287 (300)
Q Consensus 270 ~~~~~~~-~~~~~pe~~~~ 287 (300)
++++..+ .++++|||+..
T Consensus 451 ~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 451 MGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHheecCCCCC
Confidence 7766655 55778999754
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.55 E-value=7.2e-16 Score=137.31 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=106.9
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH---HHHHhhhHH-HHHHHH
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF---LCATAQSVQ-TMIIGR 201 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~---~~~~~~~~~-~l~~~~ 201 (300)
...++++++|++..+. +++.+.+.++..++++++|+++||+|||++++.+.++++++.. ...+.+... .++..+
T Consensus 30 ~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (417)
T 2cfq_A 30 FPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS 107 (417)
T ss_dssp HHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHH
T ss_pred HHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445777799999888 9999999999999999999999999999999988777655322 112222211 233445
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCc--ccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh
Q 022246 202 VLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 279 (300)
++.|++.+..++.....+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+|++.|++.+++.++..+..+
T Consensus 108 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~~~~~~~~~~~~~ 185 (417)
T 2cfq_A 108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGSGCALILAVLLF 185 (417)
T ss_dssp HGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTTTTTTTTHHHHSC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHH
Confidence 555555444444444444444433 345777788777778899999999988864 5799999988777655555555
Q ss_pred cCCC
Q 022246 280 LSPE 283 (300)
Q Consensus 280 ~~pe 283 (300)
+.+|
T Consensus 186 ~~~~ 189 (417)
T 2cfq_A 186 FAKT 189 (417)
T ss_dssp SSCC
T ss_pred HcCc
Confidence 5543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.51 E-value=9.2e-14 Score=125.94 Aligned_cols=158 Identities=13% Similarity=0.009 Sum_probs=117.8
Q ss_pred hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH-----HHhHHHHHHHHHHHHhh--------
Q 022246 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-----LDAVPLAAGAFLCATAQ-------- 192 (300)
Q Consensus 126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~-----~~~~~~~~~~~~~~~~~-------- 192 (300)
...++.+.++.+.... ++..+...++..++.++.|+++||+|||+... .+.++.+++.++.+...
T Consensus 306 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
T 4aps_A 306 LATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK 383 (491)
T ss_dssp HHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT
T ss_pred HHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3345555577764455 67778888888899999999999999986554 66666666666555533
Q ss_pred -hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHH
Q 022246 193 -SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271 (300)
Q Consensus 193 -~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 271 (300)
+.+.+++..++.|++.+...+....++.|.+|++.|+++.|+.+....+|..+++.+.+.+.+ .++.+.|++.+++.
T Consensus 384 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~~~~~~ 461 (491)
T 4aps_A 384 VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA--KSEVAYFSYFGLGS 461 (491)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG--SSTTHHHHHTHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH
Confidence 667777888999999999899999999999999999999999999999999999999998875 45667788877777
Q ss_pred HHHHHHh-hcCCCChhH
Q 022246 272 ILLALGM-GLSPESPRW 287 (300)
Q Consensus 272 ~~~~~~~-~~~pe~~~~ 287 (300)
++..++. ++.++.++.
T Consensus 462 ~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 462 VVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 6665544 444554443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.25 E-value=2.2e-12 Score=112.73 Aligned_cols=136 Identities=16% Similarity=0.107 Sum_probs=104.5
Q ss_pred HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHH-HHHHHH--HHHH--hhhHHHHHHHH
Q 022246 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP-LAAGAF--LCAT--AQSVQTMIIGR 201 (300)
Q Consensus 127 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~l~~~~ 201 (300)
..++++.+|.+..+. +++.+...++..++.++.+++.||+|++. ..+..+ ..++.. .... .++.+.+++..
T Consensus 223 ~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPA 298 (375)
T ss_dssp SCSSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence 334556688887777 89999999999999999999999998832 223222 222221 2222 24667777888
Q ss_pred HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (300)
Q Consensus 202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~ 268 (300)
++.|++.+...+....++.|.+| ++|+++.++.+....+|..++|.+.+.+.+. .+|+..+++.+
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~ 363 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT-GQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccHHHHHHH
Confidence 89999999999999999999998 8899999999999999999999998888654 66777776643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.13 E-value=1.8e-10 Score=105.12 Aligned_cols=142 Identities=16% Similarity=0.058 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc----cccCc----hHHHHHHhHHHHHHHHHHHHh---------hhHHHHHHHHHHHHH
Q 022246 144 GWIVSSLLAGATVGSFTGGSLA----DKFGR----TRTFQLDAVPLAAGAFLCATA---------QSVQTMIIGRVLAGI 206 (300)
Q Consensus 144 ~~~~~~~~i~~~i~~~~~g~ls----d~~Gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~l~G~ 206 (300)
+++.....++..++.++.+++. +|.|+ ++.+..+.++.+++.++.++. .+.+.+++..++.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 5556666666667777777764 55543 245667777777777766653 366777788899999
Q ss_pred hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC-Cch---------HHHHHHhHHHHHHHHH
Q 022246 207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-LWW---------RTMFGLAAIPSILLAL 276 (300)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~w---------~~~f~~~~~~~~~~~~ 276 (300)
+.+...+....++.|.+|+++||+++|+++....+|..++|.+.+.+.+.. .+| +..|++.+++.++..+
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI 497 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987631 123 3337777776666655
Q ss_pred Hhhc-CCCCh
Q 022246 277 GMGL-SPESP 285 (300)
Q Consensus 277 ~~~~-~pe~~ 285 (300)
+.++ .++.+
T Consensus 498 ~~~~~~~~~~ 507 (524)
T 2xut_A 498 VFALYARSYQ 507 (524)
T ss_dssp HHC-------
T ss_pred HHHHHHHHhc
Confidence 4444 44443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=50.54 E-value=3.6 Score=19.20 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=10.9
Q ss_pred hhhhhccccCchHH
Q 022246 160 TGGSLADKFGRTRT 173 (300)
Q Consensus 160 ~~g~lsd~~Grr~~ 173 (300)
++|.|..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36788899999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=38.20 E-value=43 Score=25.72 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhhhhhccccCch
Q 022246 147 VSSLLAGATVGSFTGGSLADKFGRT 171 (300)
Q Consensus 147 ~~~~~i~~~i~~~~~g~lsd~~Grr 171 (300)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567888888999999999987644
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=36.11 E-value=42 Score=17.24 Aligned_cols=11 Identities=27% Similarity=0.190 Sum_probs=6.2
Q ss_pred HHhhcCCCChh
Q 022246 276 LGMGLSPESPR 286 (300)
Q Consensus 276 ~~~~~~pe~~~ 286 (300)
.+..+++|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 34445677765
No 18
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=34.41 E-value=2.4e+02 Score=24.90 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=30.0
Q ss_pred HHHHhCCChhhhHHHHHHH----HHHHHHHHHHhhh---hhhccccCchHHHHHHhHHHHHHHHHHHH
Q 022246 130 LAKDLGIAENTVLQGWIVS----SLLAGATVGSFTG---GSLADKFGRTRTFQLDAVPLAAGAFLCAT 190 (300)
Q Consensus 130 ~~~~~~~s~~~~~~~~~~~----~~~i~~~i~~~~~---g~lsd~~Grr~~~~~~~~~~~~~~~~~~~ 190 (300)
+.+.+|++..+. +.... ...++.+++.++. =++.++.|+.+.+-...+..++..++..+
T Consensus 149 le~~~Gfnk~t~--~~f~~D~~k~~~l~~vi~~pl~~~~~~ii~~~g~~~wl~~w~~~~~~~l~~~~i 214 (482)
T 4aw6_A 149 IEEKHGFNQQTL--GFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTI 214 (482)
T ss_dssp HHHHTTCBCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhcCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 567899887654 22111 1122222332221 25677888888766555554444444433
No 19
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.33 E-value=40 Score=28.23 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=10.0
Q ss_pred CchHHHHHHhHHHHHHH
Q 022246 258 LWWRTMFGLAAIPSILL 274 (300)
Q Consensus 258 ~~w~~~f~~~~~~~~~~ 274 (300)
..|.+.|++..++.++.
T Consensus 309 l~~~~gy~~~l~~m~~~ 325 (339)
T 4ev6_A 309 ANNPQGFWLVMALMVVI 325 (339)
T ss_dssp SSCTTHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHH
Confidence 35777776665555443
Done!