BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022247
         (300 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K44|A Chain A, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
 pdb|3K44|B Chain B, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
 pdb|3K44|C Chain C, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
 pdb|3K44|D Chain D, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
          Length = 146

 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 22/144 (15%)

Query: 32  ELVCKTLQVEHKLFYFDLKENPRGRYLKISE-KTSATRSTIIVPSSGISWFLD----LFN 86
           EL  K LQ++ K FY D+K+N RGR++K++E      RS I +  S  + F D      +
Sbjct: 4   ELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSD 63

Query: 87  YYV-----NSD----DHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRN--RSTI 135
           YY      N+D    D +L S+ +  D + +Y D+ EN RGRFL+VS+ +++R   RS I
Sbjct: 64  YYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQ-TITRGGPRSQI 122

Query: 136 IVPAGSSRDEGWAAFRNILAEINE 159
            +PA     +G   FR+ L ++ E
Sbjct: 123 ALPA-----QGMIEFRDALTDLLE 141



 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 50/188 (26%)

Query: 93  DHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRN 152
           + EL +K LQ+ SK FY D+ +NRRGRF+KV+E      RS I +   ++     A FR+
Sbjct: 2   EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTA-----AEFRD 56

Query: 153 ILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLP 212
                                   HL   SD         + S   P    N D   +LP
Sbjct: 57  ------------------------HLSSFSD--------YYASLGPP----NTD---NLP 77

Query: 213 AQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVA--GSDRSSIILPLSGLKQFH 270
              E G +    +I+ D +R++ DL  N RG FLR+S+    G  RS I LP  G+ +F 
Sbjct: 78  ---EDGKLKSEMMIK-DYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPAQGMIEFR 133

Query: 271 EIVGHFVE 278
           + +   +E
Sbjct: 134 DALTDLLE 141



 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 30  DVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTS--ATRSTIIVPSSGISWFLD 83
           D +L  + +  +++ +Y DLKEN RGR+L++S+  +    RS I +P+ G+  F D
Sbjct: 79  DGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPAQGMIEFRD 134


>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
          Length = 1015

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 108 FYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGS-SRDEGWAAFRNILAEINEASRLL 164
           FY D+GEN+     K+   S+ +N     V  G    DE  + +RN+L ++ E    L
Sbjct: 107 FYHDLGENK-----KLQXKSIVKNGQLEFVTGGWVXPDEANSHWRNVLLQLTEGQTWL 159


>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
           Pseudomonas Fluorescens
 pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
          Length = 208

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 166 LPNQQGSEQSEHLVGLSDDVGAGFISGHGSQP 197
           +P   G E  E L  +SD +   FI+ HG  P
Sbjct: 58  MPGMSGIELQEQLTAISDGIPIVFITAHGDIP 89


>pdb|1EJ6|A Chain A, Reovirus Core
 pdb|2CSE|U Chain U, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
          Length = 1289

 Score = 28.5 bits (62), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 81  FLDLFNYYVNSDDHELFSKELQLDSKVFYFDIGE 114
           +L + NY  + DD  LF+K+L   +K FY D  E
Sbjct: 172 YLQMENYSNDDDDPPLFAKDLSDYAKAFYSDTYE 205


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,817,055
Number of Sequences: 62578
Number of extensions: 310813
Number of successful extensions: 773
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 8
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)