Query 022247
Match_columns 300
No_of_seqs 128 out of 154
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 16:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k44_A Purine-rich binding pro 100.0 3.8E-48 1.3E-52 332.4 13.7 141 93-281 2-144 (146)
2 3k44_A Purine-rich binding pro 100.0 4.6E-47 1.6E-51 325.7 12.5 128 29-161 1-143 (146)
3 3n8b_A Uncharacterized protein 98.2 2E-06 6.8E-11 69.3 5.6 61 224-284 9-75 (98)
4 3n8b_A Uncharacterized protein 98.1 5.8E-06 2E-10 66.7 6.9 59 30-88 2-67 (98)
5 3nm7_A Uncharacterized protein 96.7 0.0032 1.1E-07 52.7 6.5 61 28-88 7-74 (127)
6 3nm7_A Uncharacterized protein 96.4 0.0052 1.8E-07 51.4 5.9 65 222-286 13-84 (127)
7 3ntt_A Capsid protein; gene th 72.3 2.9 9.8E-05 43.7 4.2 30 31-62 223-252 (724)
8 3ng9_A Capsid protein; beta ba 72.1 3.1 0.00011 43.5 4.4 29 32-62 234-262 (736)
9 1k3v_A Capsid protein VP2; ico 47.8 18 0.00062 36.9 4.9 26 36-63 61-86 (579)
10 4agh_A Mosub1, transcription c 46.8 35 0.0012 29.3 5.8 54 230-286 44-114 (158)
11 4b4t_W RPN10, 26S proteasome r 30.7 12 0.00042 34.2 0.5 9 26-34 221-229 (268)
12 3hia_A Choline binding protein 24.5 87 0.003 23.8 4.3 20 31-50 12-31 (94)
13 2ysd_A Membrane-associated gua 24.1 74 0.0025 22.6 3.5 25 206-237 10-34 (57)
14 1i5h_W Rnedd4, ubiquitin ligas 22.4 72 0.0024 21.9 3.1 26 206-238 7-32 (50)
15 1ixd_A Cylindromatosis tumour- 21.4 24 0.00084 28.2 0.5 28 228-257 66-93 (104)
No 1
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=3.8e-48 Score=332.43 Aligned_cols=141 Identities=37% Similarity=0.601 Sum_probs=126.4
Q ss_pred CCcccccccccccceEEEeccCCCccceeEEeecccCCCCceEeecCCCCchhHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 022247 93 DHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGS 172 (300)
Q Consensus 93 ~~~~~s~~l~vdnKrFYfDlkeN~RGRFLRISE~~~~~~RstI~IPag~~~~~Gw~~FRd~L~ei~e~~~~l~~p~~~~~ 172 (300)
+++++|+.|++|+|+||||||+|+|||||||||+.+++.|++|+||+ +||.+|||+|++++|++..+.++++
T Consensus 2 ~~eL~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~~~~g~rs~I~lp~-----~~~~efrd~L~~~ie~~~~~g~~~~--- 73 (146)
T 3k44_A 2 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLAL-----STAAEFRDHLSSFSDYYASLGPPNT--- 73 (146)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECTTCCEEEEEECH-----HHHHHHHHHHHHHHHHHHTSCSCCS---
T ss_pred cccccceeEEEeceEEEEEecccCCeEEEEEEEecCCCcceEEEEEh-----hHHHHHHHHHHHHHHHHHhcCCCcc---
Confidence 56899999999999999999999999999999998777899999999 9999999999999998876654432
Q ss_pred ccchhccccccccCCCcccCCCCCCCCCCcccccCCCCCCcccccCCcccceeEeeccceEEEecCCCCceeeEEEeee-
Q 022247 173 EQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEV- 251 (300)
Q Consensus 173 ~~~e~l~~l~d~~G~~~~~~~~~q~~s~~~~~~~~~~~LP~~~~~~~~~~s~~ir~dnK~FyFDlg~N~RG~FLRISEv- 251 (300)
.+||+. +.++|++|++|||+||||||+|+||+||||||+
T Consensus 74 ------------------------------------~~~~~~----~~l~s~~i~~~~k~fyfDl~~N~RGrFLRIsE~~ 113 (146)
T 3k44_A 74 ------------------------------------DNLPED----GKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTI 113 (146)
T ss_dssp ------------------------------------SCCCTT----CEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred ------------------------------------ccCCcc----ccccchheeccCceEEEEecccCcceEEEEEEee
Confidence 145553 235689999999999999999999999999999
Q ss_pred -cCCCCceeeechhhHHHHHHHHHHHHHHHH
Q 022247 252 -AGSDRSSIILPLSGLKQFHEIVGHFVEITK 281 (300)
Q Consensus 252 -~~~~Rs~I~iP~~~~~~Fre~l~~~~d~~~ 281 (300)
++++|++||||+++|.+|+|+|++|+|+|.
T Consensus 114 ~~~~~R~~I~iP~~g~~~Fr~~l~~~~~~~~ 144 (146)
T 3k44_A 114 TRGGPRSQIALPAQGMIEFRDALTDLLEEFG 144 (146)
T ss_dssp SSCCCCEEEEEEGGGHHHHHHHHHHHHHHHC
T ss_pred ccCCCcceEEecHHHHHHHHHHHHHHHHHhc
Confidence 688999999999999999999999999984
No 2
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=4.6e-47 Score=325.74 Aligned_cols=128 Identities=38% Similarity=0.619 Sum_probs=113.2
Q ss_pred CcccceeeeeeeeceeEEEeccCCCCcceEEEEEecC-CcceEEEeecccHHHHHHHh----hhhhcCC---------CC
Q 022247 29 NDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTS-ATRSTIIVPSSGISWFLDLF----NYYVNSD---------DH 94 (300)
Q Consensus 29 ~~~eL~S~~l~ie~KrFYlDlKeN~RGRFLKIaE~~~-g~rs~I~lp~~g~~efrd~L----~~y~~~~---------~~ 94 (300)
++++||||+|++|+||||||||||+|||||||||+++ |.||+|+||+++++||+|+| ++|+... +.
T Consensus 1 ~~~eL~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~~~~g~rs~I~lp~~~~~efrd~L~~~ie~~~~~g~~~~~~~~~~~ 80 (146)
T 3k44_A 1 VEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNLPEDG 80 (146)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECTTCCEEEEEECHHHHHHHHHHHHHHHHHHHTSCSCCSSCCCTTC
T ss_pred CcccccceeEEEeceEEEEEecccCCeEEEEEEEecCCCcceEEEEEhhHHHHHHHHHHHHHHHHHhcCCCccccCCccc
Confidence 3689999999999999999999999999999999964 78999999999999999987 4676431 12
Q ss_pred cccccccccccceEEEeccCCCccceeEEeecc-cCCCCceEeecCCCCchhHHHHHHHHHHHHHHHH
Q 022247 95 ELFSKELQLDSKVFYFDIGENRRGRFLKVSEAS-VSRNRSTIIVPAGSSRDEGWAAFRNILAEINEAS 161 (300)
Q Consensus 95 ~~~s~~l~vdnKrFYfDlkeN~RGRFLRISE~~-~~~~RstI~IPag~~~~~Gw~~FRd~L~ei~e~~ 161 (300)
.+.|+.|++|||+||||||+|+|||||||||+. .+++|++||||+ +||++|||+|++|++++
T Consensus 81 ~l~s~~i~~~~k~fyfDl~~N~RGrFLRIsE~~~~~~~R~~I~iP~-----~g~~~Fr~~l~~~~~~~ 143 (146)
T 3k44_A 81 KLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPA-----QGMIEFRDALTDLLEEF 143 (146)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSCCCCEEEEEEG-----GGHHHHHHHHHHHHHHH
T ss_pred cccchheeccCceEEEEecccCcceEEEEEEeeccCCCcceEEecH-----HHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999999985 356899999999 99999999999998654
No 3
>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}
Probab=98.18 E-value=2e-06 Score=69.34 Aligned_cols=61 Identities=23% Similarity=0.529 Sum_probs=54.8
Q ss_pred eeEeeccceEEEecCCCCcee-eEEEeeec----CC-CCceeeechhhHHHHHHHHHHHHHHHHhhh
Q 022247 224 KVIRADQKRFFFDLGSNNRGH-FLRISEVA----GS-DRSSIILPLSGLKQFHEIVGHFVEITKDRI 284 (300)
Q Consensus 224 ~~ir~dnK~FyFDlg~N~RG~-FLRISEv~----~~-~Rs~I~iP~~~~~~Fre~l~~~~d~~~~~~ 284 (300)
+++++..++|||||++|+.|. ||.|+|-+ +. .|..|.|+..-+..|.++|.+.++-++...
T Consensus 9 kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~G~ferHkI~LYkEDf~~F~e~L~e~i~~I~~~~ 75 (98)
T 3n8b_A 9 KMFTESERTYFMNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENMNEFESNLLKAIAVIKQKV 75 (98)
T ss_dssp EECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhcCCeEEEEEeecccCCCeEEEEEeecccCCCCeeeEEEEEEHHHHHHHHHHHHHHHHHHHHhc
Confidence 566788999999999999998 99999974 44 799999999999999999999999988763
No 4
>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}
Probab=98.11 E-value=5.8e-06 Score=66.66 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=51.7
Q ss_pred cccceeeeeeee-ceeEEEeccCCCCcc-eEEEEEec---CC--cceEEEeecccHHHHHHHhhhh
Q 022247 30 DVELVCKTLQVE-HKLFYFDLKENPRGR-YLKISEKT---SA--TRSTIIVPSSGISWFLDLFNYY 88 (300)
Q Consensus 30 ~~eL~S~~l~ie-~KrFYlDlKeN~RGR-FLKIaE~~---~g--~rs~I~lp~~g~~efrd~L~~y 88 (300)
.+||-|+++... +|.||+|||+|..|. ||.|+|.. .| .|.+|.|..+-+..|.+.|++-
T Consensus 2 RgEvfS~kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~G~ferHkI~LYkEDf~~F~e~L~e~ 67 (98)
T 3n8b_A 2 RGEVYSEKMFTESERTYFMNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENMNEFESNLLKA 67 (98)
T ss_dssp TTEEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cchhhHHHHHhcCCeEEEEEeecccCCCeEEEEEeecccCCCCeeeEEEEEEHHHHHHHHHHHHHH
Confidence 478999999988 999999999999999 99999973 23 5899999999999999887643
No 5
>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}
Probab=96.69 E-value=0.0032 Score=52.69 Aligned_cols=61 Identities=30% Similarity=0.464 Sum_probs=51.2
Q ss_pred CCcccceeeeeeee-ceeEEEeccCCCCcc-eEEEEEec---CC--cceEEEeecccHHHHHHHhhhh
Q 022247 28 GNDVELVCKTLQVE-HKLFYFDLKENPRGR-YLKISEKT---SA--TRSTIIVPSSGISWFLDLFNYY 88 (300)
Q Consensus 28 ~~~~eL~S~~l~ie-~KrFYlDlKeN~RGR-FLKIaE~~---~g--~rs~I~lp~~g~~efrd~L~~y 88 (300)
|..+||-|+.+... ++.||+|||+|..|. ||-|+|.. .| .|..|.|=.+-+..|.+.|++-
T Consensus 7 g~ReEIfSkkv~~aGkRTYFFDVK~tR~gDyyLtITESKk~~~G~feKHKIfLYkEDF~kF~e~L~e~ 74 (127)
T 3nm7_A 7 GERGEVYSEKLFTESERTYFFNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENINEFESNLLKA 74 (127)
T ss_dssp -CTTEEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cchhhhhHHHHhhCCCeeEEEEeecccCCCeEEEEEeecccCCCCeeEEEEEEEHHHHHHHHHHHHHH
Confidence 45689999999887 999999999999997 89999974 23 5889999999999998877643
No 6
>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}
Probab=96.39 E-value=0.0052 Score=51.43 Aligned_cols=65 Identities=23% Similarity=0.503 Sum_probs=54.7
Q ss_pred cce-eEeeccceEEEecCCCCce-eeEEEeeec----CC-CCceeeechhhHHHHHHHHHHHHHHHHhhhcC
Q 022247 222 VSK-VIRADQKRFFFDLGSNNRG-HFLRISEVA----GS-DRSSIILPLSGLKQFHEIVGHFVEITKDRIEG 286 (300)
Q Consensus 222 ~s~-~ir~dnK~FyFDlg~N~RG-~FLRISEv~----~~-~Rs~I~iP~~~~~~Fre~l~~~~d~~~~~~~~ 286 (300)
-|+ ++++..++|||||++|+.| .||-|+|-+ +. .|..|.|=..-+..|.++|.+.++-++....+
T Consensus 13 fSkkv~~aGkRTYFFDVK~tR~gDyyLtITESKk~~~G~feKHKIfLYkEDF~kF~e~L~e~i~~I~~~~~e 84 (127)
T 3nm7_A 13 YSEKLFTESERTYFFNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENINEFESNLLKAIAVIKQKVST 84 (127)
T ss_dssp EEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHSCC
T ss_pred hHHHHhhCCCeeEEEEeecccCCCeEEEEEeecccCCCCeeEEEEEEEHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 454 4467789999999999996 689999975 33 78999999999999999999999999876443
No 7
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=72.29 E-value=2.9 Score=43.73 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=24.4
Q ss_pred ccceeeeeeeeceeEEEeccCCCCcceEEEEE
Q 022247 31 VELVCKTLQVEHKLFYFDLKENPRGRYLKISE 62 (300)
Q Consensus 31 ~eL~S~~l~ie~KrFYlDlKeN~RGRFLKIaE 62 (300)
.=+....+....|.++|-...|- +|.+|..
T Consensus 223 ~f~~n~V~T~~TR~~~l~~~n~h--~Yk~~~~ 252 (724)
T 3ntt_A 223 TWMGDRVVTKSTRTWVLPSYNNH--QYREIKS 252 (724)
T ss_dssp EEETTEEEEEEEEEEEECCGGGS--CCEEEEE
T ss_pred EECCCEEEEeeeeEEEecCCCCc--eeeeecc
Confidence 34566788889999999999988 7888875
No 8
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=72.08 E-value=3.1 Score=43.53 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=24.0
Q ss_pred cceeeeeeeeceeEEEeccCCCCcceEEEEE
Q 022247 32 ELVCKTLQVEHKLFYFDLKENPRGRYLKISE 62 (300)
Q Consensus 32 eL~S~~l~ie~KrFYlDlKeN~RGRFLKIaE 62 (300)
=+....+....|.++|-...|- +|.+|..
T Consensus 234 f~~n~V~T~~TR~~~l~~~n~h--~Yk~~~~ 262 (736)
T 3ng9_A 234 WLGDRVITTSTRTWALPTYNNH--LYKQISS 262 (736)
T ss_dssp ECSSEEEEEEEEEEEEECCGGG--CCEEEEC
T ss_pred ECCCEEEEeeeeEEEecCCCCc--eeeeecc
Confidence 4456778889999999999888 8988874
No 9
>1k3v_A Capsid protein VP2; icosahadral, beta sheet, icosahedral virus; 3.50A {Porcine parvovirus} SCOP: b.121.5.2
Probab=47.80 E-value=18 Score=36.95 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=20.3
Q ss_pred eeeeeeceeEEEeccCCCCcceEEEEEe
Q 022247 36 KTLQVEHKLFYFDLKENPRGRYLKISEK 63 (300)
Q Consensus 36 ~~l~ie~KrFYlDlKeN~RGRFLKIaE~ 63 (300)
+.+....|+++|.+... -.|.+|...
T Consensus 61 ~vtt~~TR~~~l~~~~~--h~Y~~i~~~ 86 (579)
T 1k3v_A 61 RITAHASRLIHLNMPEH--ETYKRIHVL 86 (579)
T ss_dssp EEEEEEEEEEEEECCSC--CSCEEEEEC
T ss_pred EEEEEeeeEEEecCCCC--CceeEEecc
Confidence 46667799999988777 489998753
No 10
>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}
Probab=46.84 E-value=35 Score=29.35 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=41.3
Q ss_pred cceEEEecCCCCceeeEEEeeecC-----------------CCCceeeechhhHHHHHHHHHHHHHHHHhhhcC
Q 022247 230 QKRFFFDLGSNNRGHFLRISEVAG-----------------SDRSSIILPLSGLKQFHEIVGHFVEITKDRIEG 286 (300)
Q Consensus 230 nK~FyFDlg~N~RG~FLRISEv~~-----------------~~Rs~I~iP~~~~~~Fre~l~~~~d~~~~~~~~ 286 (300)
+.-.||+|+.|+| +.|++.+| .-+-=|.|+...|..|.+++.++-+.++.+-..
T Consensus 44 ~g~~~~~Ls~~rr---vtV~~fkG~~~vdIREyY~k~G~~~PgkKGISLs~~qw~~L~~~~~~I~~ai~~~g~~ 114 (158)
T 4agh_A 44 EGNPFWEISDKRR---VGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTAFLKAIPAINAELRSRGHD 114 (158)
T ss_dssp TSCEEEESSSSEE---EEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEeEEcCCCcE---EEEEeeCCCEEEEeEeEEcCCCcCCCcccceecCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4557999988765 55555543 234568999999999999999999999887543
No 11
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.69 E-value=12 Score=34.23 Aligned_cols=9 Identities=33% Similarity=0.272 Sum_probs=0.0
Q ss_pred CCCCcccce
Q 022247 26 GGGNDVELV 34 (300)
Q Consensus 26 ~~~~~~eL~ 34 (300)
.+..|-||+
T Consensus 221 dp~~dpela 229 (268)
T 4b4t_W 221 DPSMDPELA 229 (268)
T ss_dssp ---------
T ss_pred CCCCCHHHH
Confidence 445566765
No 12
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus pneumoniae}
Probab=24.52 E-value=87 Score=23.80 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=12.9
Q ss_pred ccceeeeeeeeceeEEEecc
Q 022247 31 VELVCKTLQVEHKLFYFDLK 50 (300)
Q Consensus 31 ~eL~S~~l~ie~KrFYlDlK 50 (300)
...++.=+++.++.||+|-.
T Consensus 12 ~~~~~~W~~~~g~WYy~~~~ 31 (94)
T 3hia_A 12 VAPTTGWKQENGMWYFYNTD 31 (94)
T ss_dssp --CCCEEEEETTEEEEECTT
T ss_pred ccccCCeEEECCEEEEECCC
Confidence 34555667788888888743
No 13
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=24.11 E-value=74 Score=22.55 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=15.6
Q ss_pred cCCCCCCcccccCCcccceeEeeccceEEEec
Q 022247 206 DRSVDLPAQDEIGNMGVSKVIRADQKRFFFDL 237 (300)
Q Consensus 206 ~~~~~LP~~~~~~~~~~s~~ir~dnK~FyFDl 237 (300)
+...+||..=+ ..+..+.+.||+|-
T Consensus 10 ~~~~~LP~GWe-------~~~~~~Gr~Yyinh 34 (57)
T 2ysd_A 10 DNLGPLPENWE-------MAYTENGEVYFIDH 34 (57)
T ss_dssp SCCCSCCSSEE-------EEECSSCCEEEEET
T ss_pred CCCCCCCcCcE-------EEECCCCCEEEEEC
Confidence 44557888533 22334688899984
No 14
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=22.41 E-value=72 Score=21.89 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=15.8
Q ss_pred cCCCCCCcccccCCcccceeEeeccceEEEecC
Q 022247 206 DRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLG 238 (300)
Q Consensus 206 ~~~~~LP~~~~~~~~~~s~~ir~dnK~FyFDlg 238 (300)
++...||+.=+ ..+..+.+.||+|-.
T Consensus 7 ~~~~~LP~gWe-------~~~~~~Gr~Yy~nh~ 32 (50)
T 1i5h_W 7 NDLGPLPPGWE-------ERTHTDGRVFFINHN 32 (50)
T ss_dssp SCCSSCSTTEE-------EEECTTSCEEEEETT
T ss_pred ccCCCCCcCcE-------EEEcCCCCEEEEECC
Confidence 34457888532 233456788999843
No 15
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=21.40 E-value=24 Score=28.18 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=19.8
Q ss_pred eccceEEEecCCCCceeeEEEeeecCCCCc
Q 022247 228 ADQKRFFFDLGSNNRGHFLRISEVAGSDRS 257 (300)
Q Consensus 228 ~dnK~FyFDlg~N~RG~FLRISEv~~~~Rs 257 (300)
++.++ ||.+. ..+|.|+|.+.|....|.
T Consensus 66 v~G~r-YF~C~-p~~G~FVr~~~v~~~~rf 93 (104)
T 1ixd_A 66 FRGTR-YFTCA-LKKALFVKLKSCRPDSRF 93 (104)
T ss_dssp ETTEE-CSCCC-TTCBEEEEGGGEEECCTT
T ss_pred ECCEE-eeecC-CCcEEEEcHHHceecccc
Confidence 34445 56886 669999999998765443
Done!