Query 022247
Match_columns 300
No_of_seqs 128 out of 154
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 16:20:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022247.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022247hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pcfa_ d.18.1.1 (A:) Transcri 65.9 3.9 0.00028 28.7 4.5 28 255-282 38-65 (66)
2 d1ixda_ b.34.10.1 (A:) Cylindr 38.0 3.6 0.00026 31.2 0.3 27 228-256 66-92 (104)
3 d1i5hw_ b.72.1.1 (W:) Ubiquiti 31.0 19 0.0014 23.6 3.1 28 205-239 6-33 (50)
4 d2bj7a1 a.43.1.3 (A:1-50) Nick 19.7 29 0.0021 22.8 2.3 20 255-274 4-23 (50)
5 d2hzaa1 a.43.1.3 (A:1-48) Nick 19.1 31 0.0023 22.4 2.3 20 255-274 2-21 (48)
6 d2e3ha1 b.34.10.1 (A:212-282) 18.2 13 0.00097 25.9 0.2 23 228-252 46-68 (71)
7 d1emsa1 d.13.1.1 (A:281-440) N 15.4 2E+02 0.014 21.7 6.9 58 224-283 30-88 (160)
8 d1tk7a1 b.72.1.1 (A:1-45) Supp 15.3 74 0.0054 20.1 3.5 24 209-239 11-34 (45)
9 d2j8ga1 b.109.1.1 (A:191-339) 14.0 77 0.0056 23.5 3.9 18 94-111 68-85 (149)
10 d1v86a_ d.15.1.1 (A:) hypothet 12.1 1.5E+02 0.011 20.5 4.8 36 30-88 14-49 (95)
No 1
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.91 E-value=3.9 Score=28.73 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=23.7
Q ss_pred CCceeeechhhHHHHHHHHHHHHHHHHh
Q 022247 255 DRSSIILPLSGLKQFHEIVGHFVEITKD 282 (300)
Q Consensus 255 ~Rs~I~iP~~~~~~Fre~l~~~~d~~~~ 282 (300)
.+-=|.++...|.++.+++.++-+.+++
T Consensus 38 gkKGIsL~~~qw~~l~~~~~~i~~ai~~ 65 (66)
T d1pcfa_ 38 GRKGISLNPEQWSQLKEQISDIDDAVRK 65 (66)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEECHHHHHHHHHHHHHHHHHHHh
Confidence 3456999999999999999998888775
No 2
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.03 E-value=3.6 Score=31.21 Aligned_cols=27 Identities=15% Similarity=0.365 Sum_probs=20.1
Q ss_pred eccceEEEecCCCCceeeEEEeeecCCCC
Q 022247 228 ADQKRFFFDLGSNNRGHFLRISEVAGSDR 256 (300)
Q Consensus 228 ~dnK~FyFDlg~N~RG~FLRISEv~~~~R 256 (300)
++.++ ||++. -++|.|+|.+.++...|
T Consensus 66 ~~G~r-YF~C~-~~~G~Fv~~~~~~~~~~ 92 (104)
T d1ixda_ 66 FRGTR-YFTCA-LKKALFVKLKSCRPDSR 92 (104)
T ss_dssp ETTEE-CSCCC-TTCBEEEEGGGEEECCT
T ss_pred ECCEE-EEecC-CCcEEEechHHCccccc
Confidence 34555 67997 46899999999986544
No 3
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=31.00 E-value=19 Score=23.60 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=18.0
Q ss_pred ccCCCCCCcccccCCcccceeEeeccceEEEecCC
Q 022247 205 VDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGS 239 (300)
Q Consensus 205 ~~~~~~LP~~~~~~~~~~s~~ir~dnK~FyFDlg~ 239 (300)
.+...+||..=+ +.+..+.+.||+|...
T Consensus 6 ~~~~~pLP~gWe-------~~~~~~G~~YY~nh~t 33 (50)
T d1i5hw_ 6 SNDLGPLPPGWE-------ERTHTDGRVFFINHNI 33 (50)
T ss_dssp SSCCSSCSTTEE-------EEECTTSCEEEEETTT
T ss_pred CCCCCCCCCCce-------EEECCCCCEEEEECCC
Confidence 334457998533 3455678889999543
No 4
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=19.75 E-value=29 Score=22.79 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=16.4
Q ss_pred CCceeeechhhHHHHHHHHH
Q 022247 255 DRSSIILPLSGLKQFHEIVG 274 (300)
Q Consensus 255 ~Rs~I~iP~~~~~~Fre~l~ 274 (300)
.|.+|+||.+-+.+|-+.+.
T Consensus 4 ~Risvslp~~Ll~~lD~~v~ 23 (50)
T d2bj7a1 4 IRFSISIPSKLLEKFDQIIE 23 (50)
T ss_dssp EEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHH
Confidence 47899999999988876654
No 5
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.09 E-value=31 Score=22.42 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.0
Q ss_pred CCceeeechhhHHHHHHHHH
Q 022247 255 DRSSIILPLSGLKQFHEIVG 274 (300)
Q Consensus 255 ~Rs~I~iP~~~~~~Fre~l~ 274 (300)
.|.+|+||.+-+.+|-+.+.
T Consensus 2 ~RisVslp~~Ll~~lD~~v~ 21 (48)
T d2hzaa1 2 QRVTITLDDDLLETLDSLSQ 21 (48)
T ss_dssp EEEEEEECHHHHHHHHHHHH
T ss_pred ceEEEecCHHHHHHHHHHHH
Confidence 47899999999988876554
No 6
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.20 E-value=13 Score=25.95 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=16.8
Q ss_pred eccceEEEecCCCCceeeEEEeeec
Q 022247 228 ADQKRFFFDLGSNNRGHFLRISEVA 252 (300)
Q Consensus 228 ~dnK~FyFDlg~N~RG~FLRISEv~ 252 (300)
++.++ ||++.. ++|.|++.+.|+
T Consensus 46 ~~G~~-YF~c~~-~~G~Fv~~~kv~ 68 (71)
T d2e3ha1 46 VAGTR-YFQCQP-KYGLFAPVHKVT 68 (71)
T ss_dssp ETTEE-SCCCCT-TCEEEEEGGGEE
T ss_pred ECCEE-EEecCC-CCEEEeCHHHcE
Confidence 34445 678884 599999988764
No 7
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=15.37 E-value=2e+02 Score=21.73 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=41.1
Q ss_pred eeEeeccceE-EEecCCCCceeeEEEeeecCCCCceeeechhhHHHHHHHHHHHHHHHHhh
Q 022247 224 KVIRADQKRF-FFDLGSNNRGHFLRISEVAGSDRSSIILPLSGLKQFHEIVGHFVEITKDR 283 (300)
Q Consensus 224 ~~ir~dnK~F-yFDlg~N~RG~FLRISEv~~~~Rs~I~iP~~~~~~Fre~l~~~~d~~~~~ 283 (300)
++|--|.+.+ |.|+.-...|++|=|.-- ...+---+|..-+..+..++..+...+++.
T Consensus 30 ~ii~ede~~~af~Di~P~~pgH~LVIPK~--H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~ 88 (160)
T d1emsa1 30 HIFYSTPHSFVFVNLKPVTDGHVLVSPKR--VVPRLTDLTDAETADLFIVAKKVQAMLEKH 88 (160)
T ss_dssp GEEEECSSEEEEECSSCSSTTCEEEEESS--CCSCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCCCEEEEECCCCCCCCeEEEEEec--ccchhhhhhhHHHHHHHHHHHHhhhhhhhc
Confidence 5666666664 899999999999998532 233334467777888888777777777654
No 8
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=15.33 E-value=74 Score=20.09 Aligned_cols=24 Identities=29% Similarity=0.435 Sum_probs=16.4
Q ss_pred CCCCcccccCCcccceeEeeccceEEEecCC
Q 022247 209 VDLPAQDEIGNMGVSKVIRADQKRFFFDLGS 239 (300)
Q Consensus 209 ~~LP~~~~~~~~~~s~~ir~dnK~FyFDlg~ 239 (300)
-+||..=+ ..+..+.+.||+|-..
T Consensus 11 gpLP~GWe-------~~~d~~G~~Yyinh~t 34 (45)
T d1tk7a1 11 GPLPDGWE-------KKIQSDNRVYFVNHKN 34 (45)
T ss_dssp SSSSSSCC-------EEEETTTEEEEEETTT
T ss_pred CCCCCCce-------EEECCCCCEEEEECCC
Confidence 36888533 4566778899998543
No 9
>d2j8ga1 b.109.1.1 (A:191-339) C-terminal domain of endolysin {Bacteriophage cp-1 [TaxId: 10747]}
Probab=13.99 E-value=77 Score=23.51 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=12.3
Q ss_pred CcccccccccccceEEEe
Q 022247 94 HELFSKELQLDSKVFYFD 111 (300)
Q Consensus 94 ~~~~s~~l~vdnKrFYfD 111 (300)
....+..+.++++.||||
T Consensus 68 G~~~~g~~~~~g~~Yyf~ 85 (149)
T d2j8ga1 68 GAMATGWVLVGSEWYYMD 85 (149)
T ss_dssp SCBCCEEEEETTEEEEEC
T ss_pred cccccceeeeccceEEEC
Confidence 344555666788888887
No 10
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.10 E-value=1.5e+02 Score=20.49 Aligned_cols=36 Identities=14% Similarity=-0.061 Sum_probs=24.6
Q ss_pred cccceeeeeeeeceeEEEeccCCCCcceEEEEEecCCcceEEEeecccHHHHHHHhhhh
Q 022247 30 DVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYY 88 (300)
Q Consensus 30 ~~eL~S~~l~ie~KrFYlDlKeN~RGRFLKIaE~~~g~rs~I~lp~~g~~efrd~L~~y 88 (300)
.+++..-+|...+|+|-|+|..+ ..+.+|.+.|...
T Consensus 14 ~~~~i~v~V~~~~k~~~i~v~~~-----------------------~TV~~LK~~I~~~ 49 (95)
T d1v86a_ 14 GKELVDLKIIWNKTKHDVKVPLD-----------------------STGSELKQKIHSI 49 (95)
T ss_dssp CCCCEEEEEEETTEEEEEEECTT-----------------------SBHHHHHHHHHHH
T ss_pred CccEEEEEEEECCEEEEEEECCC-----------------------CcHHHHHHHHHHH
Confidence 46666667777777777777654 3567787777654
Done!