BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022248
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
+VL+IG G G ++ + +GVD ++ + A + A G+ N +F Q E+
Sbjct: 24 RVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEXVEVASSFAQEKGV--ENVRFQQGTAES 80
Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV 247
+P D S D + DV ++EV RVLK G +L V+H A +D +F
Sbjct: 81 LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEF---- 136
Query: 248 VDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG 280
V+ L ++ D H+ R++ + +A FS+ +L
Sbjct: 137 VNHLNRL-RDPSHV-RESSLSEWQAXFSANQLA 167
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
+VL++G G G A DV+V G+ +R A A AAGL F A
Sbjct: 64 RVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-ANRVTFSYADAXD 122
Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233
+P DAS DAV L D L+E RVL+PGG + V
Sbjct: 123 LPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADFV 168
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 92 YEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQV 151
YE +Y + + + + + E + L + +LE+G GTG L+ Q
Sbjct: 10 YEAWYGTPLGAYVIAEE-------ERALKGLLPPGESLLEVGAGTGYWLRRLPYP---QK 59
Query: 152 LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211
+GV+P+ + A A +++A GEA+P S D V+ L V+DV+
Sbjct: 60 VGVEPSEAXLAVGRRRAPEA-------TWVRAWGEALPFPGESFDVVLLFTTLEFVEDVE 112
Query: 212 MTLQEVRRVLKPGG 225
L E RRVL+PGG
Sbjct: 113 RVLLEARRVLRPGG 126
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 120 DNLRGKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF 178
D + KVLE G G G A + D ++ +D + + + A+ G+ N
Sbjct: 32 DTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI--KNV 89
Query: 179 KFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231
KFLQA ++P D+S D + VL ++ + L+ +++VLKPGG +E
Sbjct: 90 KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE 142
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 15/101 (14%)
Query: 130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189
+EIG+GTG +A +++ GV+P+ + + A+ V L+ E +P
Sbjct: 52 VEIGVGTGR----FAVPLKIKI-GVEPSERXAEIARKRGVFV---------LKGTAENLP 97
Query: 190 VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV 230
+ D S D + +C V D + L+E R+LK GG YL V
Sbjct: 98 LKDESFDFALXVTTICFVDDPERALKEAYRILKKGG-YLIV 137
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
+QL + L KA VL+IG G G +A A ++ G+D ++ A AA
Sbjct: 76 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLD-------VSKVAIKAAAKR 128
Query: 175 LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGG 225
F A +P SD S DA++ C +E+ RV+KPGG
Sbjct: 129 YPQVTFCVASSHRLPFSDTSXDAIIRIYAPCKA-------EELARVVKPGG 172
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 94 EFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTG-PNLKYYAADTDVQVL 152
E+Y ++ ++ +AE+ + ++ + + ++VL++ GTG P L+ A+ +V+
Sbjct: 10 EYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLE--LAERGYEVV 67
Query: 153 GVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVV---GTLVLCSVK 208
G+D + +M + A+ A L + +FLQ G+ + ++ DAV T++ +
Sbjct: 68 GLDLHEEMLRVARRKAKERNLKI---EFLQ--GDVLEIAFKNEFDAVTMFFSTIMYFDEE 122
Query: 209 DVDMTLQEVRRVLKPGGIYL 228
D+ +V LKPGG+++
Sbjct: 123 DLRKLFSKVAEALKPGGVFI 142
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 72/180 (40%), Gaps = 25/180 (13%)
Query: 97 ASVMNSSMKSYEAEVAGYKSQLFDNL---RGKAKKVLEIGIGTGP--------NLKYYAA 145
A+ ++++ EVAG + + +G+ LE+G+GTG +Y A
Sbjct: 8 AAYAYDRLRAHPPEVAGQIATAXASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIAL 67
Query: 146 DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205
D D L V + Q A + +QA AIP+ D SV V+ +
Sbjct: 68 DADAAXLEV--------FRQKIAGVD----RKVQVVQADARAIPLPDESVHGVIVVHLWH 115
Query: 206 SVKDVDMTLQEVRRVLKPGGIYL--FVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTR 263
V D L E RVLKPGG L + + A+ + T + W+ V G H R
Sbjct: 116 LVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKR 175
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL-----TNFKFLQ 182
++L+IG G+G + A V G+D N + + A+TAA + GL FK
Sbjct: 33 EILDIGCGSG-KISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVEN 91
Query: 183 AVGEAIPVSDASVDAVVGTLVLCSV---KDVDMTLQEVRRVLKPGGIYLFVE 231
A ++ D+S D V L SV K+ ++EV RVLKPG VE
Sbjct: 92 A--SSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPN----RKMEKYAQTAAVAAGLPLTNFKF 180
K KVL++ G G + D +V+GVD + RK +YA++ +N +F
Sbjct: 38 KRGKVLDLACGVG-GFSFLLEDYGFEVVGVDISEDXIRKAREYAKSRE-------SNVEF 89
Query: 181 LQAVGEAIPVSDASVDAVV--GTLVLCSVKDVDMTLQEVRRVLKPGGIYL 228
+ + D + D V+ ++V +++ +EVRRVLKP G ++
Sbjct: 90 IVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 24/144 (16%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
+VL++G GTG + + +V+ VDP+++ + A+ V ++A E
Sbjct: 57 RVLDLGGGTG-KWSLFLQERGFEVVLVDPSKEXLEVAREKGVK--------NVVEAKAED 107
Query: 188 IPVSDASVDAVVGT-LVLCSVKDVDMTLQEVRRVLKPGGI--------YLFVEHVAAKDG 238
+P + +AV+ VL V++ D E+RRVL P G+ Y F++ KD
Sbjct: 108 LPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQXIEKDA 167
Query: 239 TFLKFWQNVVDPLQ-QIVSDGCHL 261
W + L+ Q S G L
Sbjct: 168 -----WDQITRFLKTQTTSVGTTL 186
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
+++++G G G ++ VLG+D + K A+ A P T + +A +
Sbjct: 46 RIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLARARAAG-----PDTGITYERADLDK 100
Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF-VEH 232
+ + S D +L L V+DV + V + L PGG ++F EH
Sbjct: 101 LHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH 146
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186
K VL++G G G + Y A +VLG+D + +M A+ + P+ ++ Q E
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS---PVVCYE--QKAIE 100
Query: 187 AIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF-VEH-VAAKDG 238
I + + + V+ +L L + D ++V LK G ++F VEH V DG
Sbjct: 101 DIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADG 154
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQV--LGVDP--NRKMEKYAQTAAVAAGLPLTNFKFLQA 183
K L++G G G ++ V + L + P N++ E+Y A +A + + FL+
Sbjct: 85 KGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE- 143
Query: 184 VGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGI 226
IP D S D + D QE RVLKP G+
Sbjct: 144 ----IPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGV 182
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 129 VLEIGIGTGPNLKYYA--ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186
VL++G G G L Y + +V +D +M YA GL N + L++
Sbjct: 41 VLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL--KNVEVLKSEEN 98
Query: 187 AIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKP 223
IP+ D +VD + + + L+E++RV KP
Sbjct: 99 KIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKP 135
>pdb|4E30|A Chain A, X-Ray Structure Of The H181nE224Q DOUBLE MUTANT OF TCAB9,
A C-3'- Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 87 PRPDWYEEFYA--SVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA 144
PR + E Y S +S M+ + A +A + L L G ++EIG G L+
Sbjct: 69 PRDLMFHEVYPYHSSGSSVMREHFAMLA--RDFLATELTGPDPFIVEIGCNDGIMLRTIQ 126
Query: 145 ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204
+ V+ LG +P+ + A+ + T+F F +A + + ++ + + L
Sbjct: 127 -EAGVRHLGFEPSSGVAAKAREKGIRV---RTDF-FEKATADDVRRTEGPANVIYAANTL 181
Query: 205 CSVKDVDMTLQEVRRVLKPGGIYLF 229
C++ V L+ V +L P G+++F
Sbjct: 182 CNIPYVQSVLEGVDALLAPDGVFVF 206
>pdb|4E2W|A Chain A, X-Ray Structure Of The H181n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 87 PRPDWYEEFYA--SVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA 144
PR + E Y S +S M+ + A +A + L L G ++EIG G L+
Sbjct: 69 PRDLMFHEVYPYHSSGSSVMREHFAMLA--RDFLATELTGPDPFIVEIGCNDGIMLRTIQ 126
Query: 145 ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204
+ V+ LG +P+ + A+ + T+F F +A + + ++ + + L
Sbjct: 127 -EAGVRHLGFEPSSGVAAKAREKGIRV---RTDF-FEKATADDVRRTEGPANVIYAANTL 181
Query: 205 CSVKDVDMTLQEVRRVLKPGGIYLF 229
C++ V L+ V +L P G+++F
Sbjct: 182 CNIPYVQSVLEGVDALLAPDGVFVF 206
>pdb|4E2Y|A Chain A, X-Ray Structure Of The E224q Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 87 PRPDWYEEFYA--SVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA 144
PR + E Y S +S M+ + A +A + L L G ++EIG G L+
Sbjct: 69 PRDLMFHEVYPYHSSGSSVMREHFAMLA--RDFLATELTGPDPFIVEIGCNDGIMLRTIQ 126
Query: 145 ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204
+ V+ LG +P+ + A+ + T+F F +A + + ++ + + L
Sbjct: 127 -EAGVRHLGFEPSSGVAAKAREKGIRV---RTDF-FEKATADDVRRTEGPANVIYAANTL 181
Query: 205 CSVKDVDMTLQEVRRVLKPGGIYLF 229
C + V L+ V +L P G+++F
Sbjct: 182 CHIPYVQSVLEGVDALLAPDGVFVF 206
>pdb|3NDI|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosylmethionine And Dtmp
pdb|3NDJ|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosyl-L-Homocysteine And Sugar Product
pdb|4E32|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Dtdp-Sugar
Substrate
pdb|4E33|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Reduced
Dtdp-Sugar Substrate
Length = 416
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 87 PRPDWYEEFYA--SVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA 144
PR + E Y S +S M+ + A +A + L L G ++EIG G L+
Sbjct: 69 PRDLMFHEVYPYHSSGSSVMREHFAMLA--RDFLATELTGPDPFIVEIGCNDGIMLRTIQ 126
Query: 145 ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204
+ V+ LG +P+ + A+ + T+F F +A + + ++ + + L
Sbjct: 127 -EAGVRHLGFEPSSGVAAKAREKGIRV---RTDF-FEKATADDVRRTEGPANVIYAANTL 181
Query: 205 CSVKDVDMTLQEVRRVLKPGGIYLF 229
C + V L+ V +L P G+++F
Sbjct: 182 CHIPYVQSVLEGVDALLAPDGVFVF 206
>pdb|4E2X|A Chain A, X-Ray Structure Of The Y222f Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 87 PRPDWYEEFYA--SVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA 144
PR + E Y S +S M+ + A +A + L L G ++EIG G L+
Sbjct: 69 PRDLMFHEVYPYHSSGSSVMREHFAMLA--RDFLATELTGPDPFIVEIGCNDGIMLRTIQ 126
Query: 145 ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204
+ V+ LG +P+ + A+ + T+F F +A + + ++ + + L
Sbjct: 127 -EAGVRHLGFEPSSGVAAKAREKGIRV---RTDF-FEKATADDVRRTEGPANVIYAANTL 181
Query: 205 CSVKDVDMTLQEVRRVLKPGGIYLF 229
C + V L+ V +L P G+++F
Sbjct: 182 CHIPYVQSVLEGVDALLAPDGVFVF 206
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 96 YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVD 155
Y S + Y+ A Y+ L D + VLE G+GTG NL V G++
Sbjct: 16 YDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTG-NLTNKLLLAGRTVYGIE 74
Query: 156 PNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD--VDMT 213
P+R+M A+ + +T FL +P S+D +V T + D ++
Sbjct: 75 PSREMRMIAK-EKLPKEFSITEGDFLSF---EVP---TSIDTIVSTYAFHHLTDDEKNVA 127
Query: 214 LQEVRRVLKPGGIYLFVEHVAAKDGTFLK 242
+ + ++L GG +F + + A + K
Sbjct: 128 IAKYSQLLNKGGKIVFADTIFADQDAYDK 156
>pdb|4E2Z|A Chain A, X-Ray Structure Of The H225n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 87 PRPDWYEEFYA--SVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA 144
PR + E Y S +S M+ + A +A + L L G ++EIG G L+
Sbjct: 69 PRDLMFHEVYPYHSSGSSVMREHFAMLA--RDFLATELTGPDPFIVEIGCNDGIMLRTIQ 126
Query: 145 ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204
+ V+ LG +P+ + A+ + T+F F +A + + ++ + + L
Sbjct: 127 -EAGVRHLGFEPSSGVAAKAREKGIRV---RTDF-FEKATADDVRRTEGPANVIYAANTL 181
Query: 205 CSVKDVDMTLQEVRRVLKPGGIYLF 229
C + V L+ V +L P G+++F
Sbjct: 182 CHIPYVQSVLEGVDALLAPDGVFVF 206
>pdb|4E31|A Chain A, X-Ray Structure Of The Y76f Mutant Of Tcab9, A
C-3'-Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 91 WYEEF-YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV 149
++E F Y S +S M+ + A +A + L L G ++EIG G L+ + V
Sbjct: 74 FHEVFPYHSSGSSVMREHFAMLA--RDFLATELTGPDPFIVEIGCNDGIMLRTIQ-EAGV 130
Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209
+ LG +P+ + A+ + T+F F +A + + ++ + + LC +
Sbjct: 131 RHLGFEPSSGVAAKAREKGIRV---RTDF-FEKATADDVRRTEGPANVIYAANTLCHIPY 186
Query: 210 VDMTLQEVRRVLKPGGIYLF 229
V L+ V +L P G+++F
Sbjct: 187 VQSVLEGVDALLAPDGVFVF 206
>pdb|2ZFU|A Chain A, Structure Of The Methyltransferase-Like Domain Of
Nucleomethylin
pdb|2ZFU|B Chain B, Structure Of The Methyltransferase-Like Domain Of
Nucleomethylin
Length = 215
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK 236
+P+ D SVD V L L D L+E RVLKPGG+ L V V+++
Sbjct: 109 VPLEDESVDVAVFCLSLMGTNIRDF-LEEANRVLKPGGL-LKVAEVSSR 155
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 176 TNFKFLQAVGE--AIPVSDASVDAVV--GTLVLCSVKDVDMTLQEVRRVLKPGGI 226
NFK + G+ +P D S V GT+ DV + E++RVLKPGG+
Sbjct: 69 NNFKLNISKGDIRKLPFKDESXSFVYSYGTIFHXRKNDVKEAIDEIKRVLKPGGL 123
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185
A ++IG G G A +D + +D ++ + A A L + +Q
Sbjct: 44 AGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLN-DRIQIVQGDV 102
Query: 186 EAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGG 225
IP+ D D +V + +DV +E+ R+LK GG
Sbjct: 103 HNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGG 142
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
Pyruvate Carboxylase
Length = 451
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
K + + N+ KA K EIG +++ AD + + ++ N +++ + + G+
Sbjct: 250 KREYYGNIVTKAAK--EIGYYNAGTMEF-IADQEGNLYFIEMNTRIQVEHPVSEMVTGID 306
Query: 175 LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSV------KDVDMTLQEVRRVLKPGGIYL 228
+ ++ A GE + + V G + C + K+ + + + R PGG +
Sbjct: 307 IVKWQIKIAAGEPLTIKQEDVK-FNGYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGI 365
Query: 229 FVEHVAAKDGTFLKFWQNVVDPL 251
VEH AA+ ++ +++ L
Sbjct: 366 RVEHAAARGFEVTPYYDSMIAKL 388
>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
+VL+ G G G A+ QV+ D + + A+ AA A G+ N +F+ +
Sbjct: 71 RVLDAGGGEG-QTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGVS-DNXQFIHCAAQD 128
Query: 188 IPVS-DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGI 226
+ + VD ++ VL V D LQ + VL+PGG+
Sbjct: 129 VASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGV 168
>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
+VL+ G G G A+ QV+ D + + A+ AA A G+ N +F+ +
Sbjct: 71 RVLDAGGGEG-QTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGVS-DNXQFIHCAAQD 128
Query: 188 IPVS-DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGI 226
+ + VD ++ VL V D LQ + VL+PGG+
Sbjct: 129 VASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGV 168
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT 176
++ D G LE GP YA D D + LG+ A+ AA+A+G L+
Sbjct: 206 RVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGL---------AREAALASG--LS 254
Query: 177 NFKFLQAVGEAIPVSDASVDAVV 199
+FL+A +P VD ++
Sbjct: 255 WIRFLRADARHLPRFFPEVDRIL 277
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 5/158 (3%)
Query: 122 LRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL 181
L+G ++VL++ G G +A +V+ D + K A+ A G +++
Sbjct: 35 LKGN-EEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVAR--AFIEGNGHQQVEYV 90
Query: 182 QAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFL 241
Q E P +D V + + + E RVLK GG L V++ A ++ F
Sbjct: 91 QGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFD 150
Query: 242 KFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL 279
F+ N V+ + + EAGF EL
Sbjct: 151 VFY-NYVEKERDYSHHRAWKKSDWLKXLEEAGFELEEL 187
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 129 VLEIGIGTGPNLKYYAADTDVQVLGVD-PNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
+L++G GTG L A + +VLG D +EK Q P +F A
Sbjct: 61 ILDLGCGTG-QLTEKIAQSGAEVLGTDNAATXIEKARQN------YPHLHFDVADARNFR 113
Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYL 228
+ D +DAV L VK+ + + + + LK GG ++
Sbjct: 114 V---DKPLDAVFSNAXLHWVKEPEAAIASIHQALKSGGRFV 151
>pdb|1NF4|A Chain A, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|B Chain B, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|C Chain C, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|D Chain D, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|E Chain E, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|F Chain F, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|G Chain G, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|H Chain H, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|I Chain I, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|J Chain J, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|K Chain K, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|L Chain L, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|M Chain M, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|N Chain N, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|O Chain O, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|P Chain P, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF6|A Chain A, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|B Chain B, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|C Chain C, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|D Chain D, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|E Chain E, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|F Chain F, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|G Chain G, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|H Chain H, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|I Chain I, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|J Chain J, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|K Chain K, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|L Chain L, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|M Chain M, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|N Chain N, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|O Chain O, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|P Chain P, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NFV|A Chain A, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|B Chain B, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|C Chain C, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|D Chain D, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|E Chain E, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|F Chain F, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|G Chain G, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|H Chain H, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|I Chain I, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|J Chain J, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|K Chain K, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|L Chain L, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|M Chain M, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|N Chain N, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|O Chain O, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|P Chain P, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
Length = 179
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 139 NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-------- 190
++ Y +++++ +D R E +A+ G P T + G+A+PV
Sbjct: 39 DMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQ 98
Query: 191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYL 228
DA+++A L +C + +T + R+++ +L
Sbjct: 99 EDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHL 136
>pdb|1XOV|A Chain A, The Crystal Structure Of The Listeria Monocytogenes
Bacteriophage Psa Endolysin Plypsa
Length = 326
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
L G GTG + YYA D + L V+ + KM K A GLP
Sbjct: 92 LNAGKGTGVEVWYYAGDEKGRKLAVEISAKMAK-------ALGLP 129
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 90 DWYEEFYASV-MNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT 147
D+Y + YA ++ M E Y++ +F N K K VL++G GTG + A
Sbjct: 23 DYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG 82
Query: 148 DVQVLGVD 155
+V+G++
Sbjct: 83 ARKVIGIE 90
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 90 DWYEEFYASV-MNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT 147
D+Y + YA ++ M E Y++ +F N K K VL++G GTG + A
Sbjct: 33 DYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG 92
Query: 148 DVQVLGVD 155
+V+G++
Sbjct: 93 ARKVIGIE 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,525,675
Number of Sequences: 62578
Number of extensions: 281151
Number of successful extensions: 759
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 44
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)