Query 022248
Match_columns 300
No_of_seqs 255 out of 3287
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 09:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4300 Predicted methyltransf 100.0 2.5E-27 5.3E-32 184.8 17.8 218 79-300 32-252 (252)
2 PLN02244 tocopherol O-methyltr 99.9 4.3E-25 9.3E-30 194.5 24.1 207 77-284 57-281 (340)
3 COG2226 UbiE Methylase involve 99.9 1.1E-25 2.4E-30 185.0 18.9 169 113-283 38-226 (238)
4 PF01209 Ubie_methyltran: ubiE 99.9 1.7E-26 3.7E-31 191.9 13.0 159 124-284 46-223 (233)
5 PLN02396 hexaprenyldihydroxybe 99.9 3E-24 6.4E-29 185.9 19.0 156 125-283 131-291 (322)
6 PLN02233 ubiquinone biosynthes 99.9 1.1E-22 2.5E-27 172.7 22.4 160 124-284 72-251 (261)
7 TIGR02752 MenG_heptapren 2-hep 99.9 8.1E-22 1.7E-26 165.3 22.7 167 115-283 34-220 (231)
8 KOG1540 Ubiquinone biosynthesi 99.9 2.8E-22 6E-27 161.8 18.8 162 117-278 91-278 (296)
9 PRK11088 rrmA 23S rRNA methylt 99.9 2.7E-22 5.8E-27 171.9 16.3 161 41-234 17-184 (272)
10 COG2227 UbiG 2-polyprenyl-3-me 99.9 2.5E-22 5.5E-27 162.2 10.0 157 124-284 58-218 (243)
11 PTZ00098 phosphoethanolamine N 99.9 4.6E-21 1E-25 163.1 17.6 159 116-282 42-203 (263)
12 PRK15451 tRNA cmo(5)U34 methyl 99.9 2.5E-20 5.3E-25 157.5 19.0 168 115-285 46-234 (247)
13 PRK11036 putative S-adenosyl-L 99.9 9.5E-21 2.1E-25 160.9 15.8 165 115-282 34-208 (255)
14 PRK14103 trans-aconitate 2-met 99.9 2.9E-20 6.3E-25 158.0 18.0 155 115-280 18-183 (255)
15 TIGR00740 methyltransferase, p 99.9 6.4E-20 1.4E-24 154.5 18.3 162 118-282 46-228 (239)
16 PRK15068 tRNA mo(5)U34 methylt 99.9 3.6E-20 7.9E-25 161.6 17.1 156 124-283 121-276 (322)
17 PF13489 Methyltransf_23: Meth 99.9 5.3E-21 1.2E-25 151.1 10.9 140 124-278 21-160 (161)
18 PLN02490 MPBQ/MSBQ methyltrans 99.8 4E-20 8.7E-25 160.7 15.7 145 124-282 112-257 (340)
19 PF02353 CMAS: Mycolic acid cy 99.8 8.3E-20 1.8E-24 155.2 16.6 166 111-285 47-221 (273)
20 PF13847 Methyltransf_31: Meth 99.8 6.9E-20 1.5E-24 143.5 14.2 143 125-273 3-152 (152)
21 PLN02336 phosphoethanolamine N 99.8 1.5E-19 3.3E-24 167.0 18.2 151 124-282 265-415 (475)
22 TIGR00452 methyltransferase, p 99.8 1.6E-19 3.4E-24 155.9 16.7 157 124-284 120-276 (314)
23 PRK10258 biotin biosynthesis p 99.8 5.5E-19 1.2E-23 149.9 19.3 141 125-276 42-182 (251)
24 PRK11873 arsM arsenite S-adeno 99.8 3.1E-19 6.6E-24 153.3 17.6 153 124-281 76-230 (272)
25 PF08241 Methyltransf_11: Meth 99.8 3.5E-20 7.5E-25 133.1 9.3 95 130-229 1-95 (95)
26 PRK05785 hypothetical protein; 99.8 1.3E-18 2.7E-23 144.7 19.1 146 125-283 51-213 (226)
27 COG2230 Cfa Cyclopropane fatty 99.8 3.5E-19 7.6E-24 149.1 15.6 164 113-285 59-227 (283)
28 PRK00216 ubiE ubiquinone/menaq 99.8 2.6E-18 5.6E-23 144.7 20.6 157 125-282 51-226 (239)
29 KOG1270 Methyltransferases [Co 99.8 8.8E-20 1.9E-24 148.3 9.7 152 126-281 90-249 (282)
30 smart00828 PKS_MT Methyltransf 99.8 8.9E-19 1.9E-23 146.2 14.8 147 127-285 1-148 (224)
31 PRK08317 hypothetical protein; 99.8 6.1E-18 1.3E-22 142.4 18.3 157 124-284 18-179 (241)
32 PRK11207 tellurite resistance 99.8 3.5E-18 7.5E-23 139.4 16.1 139 125-281 30-170 (197)
33 PF12847 Methyltransf_18: Meth 99.8 9.9E-19 2.1E-23 129.7 11.2 105 125-231 1-111 (112)
34 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 1.8E-17 3.8E-22 138.1 20.0 157 124-284 38-213 (223)
35 TIGR02072 BioC biotin biosynth 99.8 7.9E-18 1.7E-22 141.8 16.7 143 125-282 34-177 (240)
36 TIGR02021 BchM-ChlM magnesium 99.8 1.8E-17 4E-22 137.7 18.6 152 124-282 54-207 (219)
37 PRK01683 trans-aconitate 2-met 99.8 2.7E-17 5.8E-22 140.2 18.9 153 115-276 20-182 (258)
38 TIGR02716 C20_methyl_CrtF C-20 99.8 3.6E-17 7.8E-22 142.7 18.8 153 124-280 148-305 (306)
39 PF08003 Methyltransf_9: Prote 99.8 1.5E-17 3.2E-22 139.4 13.7 156 124-283 114-269 (315)
40 TIGR00477 tehB tellurite resis 99.8 3.3E-17 7.2E-22 133.4 15.5 139 125-282 30-170 (195)
41 PRK00107 gidB 16S rRNA methylt 99.8 1.5E-16 3.2E-21 127.8 18.4 127 125-284 45-172 (187)
42 PRK06202 hypothetical protein; 99.7 9.5E-17 2.1E-21 134.6 16.3 149 124-281 59-222 (232)
43 PRK05134 bifunctional 3-demeth 99.7 3E-16 6.6E-21 131.7 18.6 154 124-281 47-205 (233)
44 PRK12335 tellurite resistance 99.7 1.1E-16 2.5E-21 138.1 15.7 138 125-281 120-259 (287)
45 TIGR00138 gidB 16S rRNA methyl 99.7 3.4E-16 7.3E-21 125.5 16.5 131 125-285 42-173 (181)
46 TIGR01983 UbiG ubiquinone bios 99.7 5.7E-16 1.2E-20 129.2 18.2 156 125-283 45-205 (224)
47 PRK07580 Mg-protoporphyrin IX 99.7 4.7E-16 1E-20 130.3 16.8 153 124-283 62-216 (230)
48 PLN02585 magnesium protoporphy 99.7 8.9E-16 1.9E-20 132.9 18.5 149 125-282 144-300 (315)
49 PF03848 TehB: Tellurite resis 99.7 6.8E-16 1.5E-20 123.2 15.8 139 125-282 30-170 (192)
50 TIGR02081 metW methionine bios 99.7 4.9E-16 1.1E-20 126.6 14.5 147 124-282 12-168 (194)
51 PRK11705 cyclopropane fatty ac 99.7 2.7E-16 5.8E-21 140.3 14.0 158 113-284 154-315 (383)
52 COG4106 Tam Trans-aconitate me 99.7 5.7E-16 1.2E-20 122.5 13.1 158 113-280 17-184 (257)
53 PLN02232 ubiquinone biosynthes 99.7 4.7E-16 1E-20 122.5 12.5 133 152-285 1-151 (160)
54 PF08242 Methyltransf_12: Meth 99.7 1.4E-17 3.1E-22 120.6 3.2 96 130-227 1-99 (99)
55 PF13649 Methyltransf_25: Meth 99.7 6.4E-17 1.4E-21 117.6 6.3 94 129-225 1-101 (101)
56 TIGR00537 hemK_rel_arch HemK-r 99.7 4.1E-15 9E-20 119.6 16.8 130 125-285 19-169 (179)
57 PRK08287 cobalt-precorrin-6Y C 99.7 9.2E-15 2E-19 118.4 18.2 129 124-284 30-159 (187)
58 TIGR03587 Pse_Me-ase pseudamin 99.7 4.1E-15 8.9E-20 121.6 15.9 108 115-233 34-144 (204)
59 PRK00121 trmB tRNA (guanine-N( 99.7 8E-16 1.7E-20 125.9 11.6 111 119-231 34-156 (202)
60 PF07021 MetW: Methionine bios 99.7 2.3E-15 4.9E-20 118.6 13.5 148 123-285 11-171 (193)
61 PLN02336 phosphoethanolamine N 99.7 7.5E-16 1.6E-20 142.5 12.1 145 125-284 37-185 (475)
62 PRK06922 hypothetical protein; 99.7 3.1E-15 6.7E-20 138.0 15.6 106 125-233 418-539 (677)
63 KOG1271 Methyltransferases [Ge 99.6 7.7E-15 1.7E-19 112.9 14.3 129 125-280 67-204 (227)
64 COG4976 Predicted methyltransf 99.6 7E-16 1.5E-20 122.9 8.3 171 112-300 111-285 (287)
65 TIGR03840 TMPT_Se_Te thiopurin 99.6 6.1E-15 1.3E-19 121.1 13.9 156 114-285 22-191 (213)
66 PF05401 NodS: Nodulation prot 99.6 4E-15 8.7E-20 117.4 10.8 102 125-232 43-147 (201)
67 KOG2361 Predicted methyltransf 99.6 1.8E-15 3.8E-20 121.8 8.9 151 127-280 73-236 (264)
68 PRK13944 protein-L-isoaspartat 99.6 1.1E-14 2.5E-19 119.4 14.0 101 124-231 71-173 (205)
69 TIGR02469 CbiT precorrin-6Y C5 99.6 2.5E-14 5.4E-19 107.8 14.3 103 124-231 18-122 (124)
70 TIGR03534 RF_mod_PrmC protein- 99.6 4.9E-14 1.1E-18 119.6 17.4 139 116-283 78-243 (251)
71 TIGR00406 prmA ribosomal prote 99.6 2.5E-14 5.3E-19 123.5 15.7 111 116-232 150-260 (288)
72 smart00138 MeTrc Methyltransfe 99.6 5.5E-15 1.2E-19 125.7 11.4 107 125-231 99-242 (264)
73 PLN03075 nicotianamine synthas 99.6 2.8E-14 6E-19 121.2 15.3 106 124-231 122-233 (296)
74 PRK00517 prmA ribosomal protei 99.6 3.4E-14 7.4E-19 120.2 15.9 123 123-282 117-239 (250)
75 TIGR00091 tRNA (guanine-N(7)-) 99.6 7.8E-15 1.7E-19 119.4 11.5 106 125-232 16-133 (194)
76 PRK04266 fibrillarin; Provisio 99.6 4.6E-14 1E-18 116.8 16.1 135 124-282 71-211 (226)
77 PRK14968 putative methyltransf 99.6 7.8E-14 1.7E-18 113.0 17.1 135 124-285 22-177 (188)
78 PRK00377 cbiT cobalt-precorrin 99.6 1.1E-13 2.3E-18 113.1 17.8 104 124-231 39-145 (198)
79 PRK13255 thiopurine S-methyltr 99.6 3.5E-14 7.6E-19 117.1 14.9 153 113-284 24-193 (218)
80 PRK13942 protein-L-isoaspartat 99.6 3.5E-14 7.5E-19 117.1 14.3 100 124-231 75-176 (212)
81 TIGR00080 pimt protein-L-isoas 99.6 6.7E-14 1.5E-18 115.8 14.5 100 124-231 76-177 (215)
82 TIGR01177 conserved hypothetic 99.6 5.6E-14 1.2E-18 123.6 14.6 131 124-286 181-320 (329)
83 PRK14967 putative methyltransf 99.6 2.5E-13 5.4E-18 113.1 17.5 106 124-233 35-161 (223)
84 TIGR03438 probable methyltrans 99.6 3.8E-13 8.3E-18 116.8 19.0 116 114-231 53-177 (301)
85 COG2264 PrmA Ribosomal protein 99.6 5.6E-14 1.2E-18 118.9 13.3 138 114-282 151-289 (300)
86 PRK14121 tRNA (guanine-N(7)-)- 99.6 3.7E-13 8.1E-18 118.5 18.0 150 125-280 122-285 (390)
87 PRK15001 SAM-dependent 23S rib 99.5 1.4E-13 2.9E-18 121.8 14.8 106 126-232 229-341 (378)
88 PRK11188 rrmJ 23S rRNA methylt 99.5 1.2E-13 2.5E-18 113.5 13.2 98 124-234 50-168 (209)
89 PF06325 PrmA: Ribosomal prote 99.5 1.2E-13 2.6E-18 118.1 13.6 136 113-282 149-284 (295)
90 PF05175 MTS: Methyltransferas 99.5 2.2E-13 4.8E-18 108.5 14.1 105 125-232 31-141 (170)
91 PF13659 Methyltransf_26: Meth 99.5 4.4E-14 9.4E-19 105.5 8.9 106 126-232 1-116 (117)
92 PF05891 Methyltransf_PK: AdoM 99.5 1.4E-13 3E-18 110.6 11.0 147 125-283 55-203 (218)
93 PRK09489 rsmC 16S ribosomal RN 99.5 4.2E-13 9.1E-18 117.9 15.1 105 125-234 196-306 (342)
94 PF12147 Methyltransf_20: Puta 99.5 4.3E-12 9.4E-17 105.6 19.2 166 113-280 121-297 (311)
95 PTZ00146 fibrillarin; Provisio 99.5 9.4E-13 2E-17 111.5 15.5 137 124-282 131-272 (293)
96 TIGR00536 hemK_fam HemK family 99.5 1.2E-12 2.6E-17 112.8 16.1 103 127-231 116-244 (284)
97 PRK14966 unknown domain/N5-glu 99.5 1.9E-12 4.2E-17 114.7 16.8 142 114-285 241-409 (423)
98 PRK07402 precorrin-6B methylas 99.5 1.3E-12 2.8E-17 106.6 14.4 103 124-232 39-143 (196)
99 TIGR03533 L3_gln_methyl protei 99.5 1.6E-12 3.4E-17 111.9 15.2 105 125-231 121-251 (284)
100 PF00891 Methyltransf_2: O-met 99.5 2.2E-12 4.7E-17 108.8 15.9 135 124-270 99-241 (241)
101 PRK00312 pcm protein-L-isoaspa 99.5 1.1E-12 2.4E-17 108.4 13.9 100 124-232 77-176 (212)
102 KOG2940 Predicted methyltransf 99.5 2.5E-13 5.4E-18 108.4 8.5 153 124-280 71-226 (325)
103 COG2518 Pcm Protein-L-isoaspar 99.5 1.6E-12 3.5E-17 104.1 13.1 108 115-231 61-169 (209)
104 PF01135 PCMT: Protein-L-isoas 99.5 7.2E-13 1.6E-17 108.2 11.2 101 124-232 71-173 (209)
105 PRK11805 N5-glutamine S-adenos 99.5 2E-12 4.4E-17 112.2 14.7 103 127-231 135-263 (307)
106 COG4123 Predicted O-methyltran 99.4 1.8E-12 3.9E-17 107.0 13.0 131 125-282 44-195 (248)
107 KOG1541 Predicted protein carb 99.4 6.9E-13 1.5E-17 105.4 9.3 99 125-231 50-160 (270)
108 COG2242 CobL Precorrin-6B meth 99.4 9.6E-12 2.1E-16 97.5 14.8 107 119-231 27-135 (187)
109 cd02440 AdoMet_MTases S-adenos 99.4 2.8E-12 6.1E-17 92.7 11.1 101 128-230 1-103 (107)
110 PRK13943 protein-L-isoaspartat 99.4 2.8E-12 6.1E-17 111.4 12.9 100 124-231 79-180 (322)
111 PRK09328 N5-glutamine S-adenos 99.4 1.8E-11 3.8E-16 105.3 17.7 129 124-281 107-262 (275)
112 PF05148 Methyltransf_8: Hypot 99.4 2.8E-12 6.1E-17 102.0 11.4 122 116-280 61-184 (219)
113 KOG3010 Methyltransferase [Gen 99.4 2.7E-13 5.8E-18 109.4 5.3 102 127-231 35-137 (261)
114 PHA03411 putative methyltransf 99.4 5.8E-12 1.3E-16 105.5 13.0 124 125-275 64-208 (279)
115 PRK13256 thiopurine S-methyltr 99.4 3.5E-12 7.5E-17 104.9 11.2 140 88-232 8-164 (226)
116 PF05724 TPMT: Thiopurine S-me 99.4 9.4E-12 2E-16 102.5 13.7 156 113-284 24-193 (218)
117 PF05219 DREV: DREV methyltran 99.4 5.6E-12 1.2E-16 103.7 12.2 95 125-231 94-188 (265)
118 PRK11783 rlmL 23S rRNA m(2)G24 99.4 1E-11 2.2E-16 119.3 15.8 135 125-285 538-684 (702)
119 PRK01544 bifunctional N5-gluta 99.4 1E-11 2.2E-16 114.9 14.6 128 126-281 139-293 (506)
120 PRK14901 16S rRNA methyltransf 99.4 2.2E-11 4.8E-16 111.0 16.7 109 124-234 251-387 (434)
121 PRK13168 rumA 23S rRNA m(5)U19 99.4 3.8E-11 8.1E-16 109.9 17.4 149 114-298 285-438 (443)
122 PF06080 DUF938: Protein of un 99.4 2.2E-11 4.7E-16 97.6 13.7 158 125-286 24-197 (204)
123 COG2813 RsmC 16S RNA G1207 met 99.4 1.1E-11 2.5E-16 104.4 12.5 111 118-232 150-267 (300)
124 PRK00811 spermidine synthase; 99.4 2.5E-11 5.5E-16 104.3 14.9 108 124-231 75-191 (283)
125 COG2519 GCD14 tRNA(1-methylade 99.3 2.7E-11 5.9E-16 99.2 13.6 103 124-233 93-197 (256)
126 TIGR00438 rrmJ cell division p 99.3 1.3E-11 2.7E-16 100.1 11.2 96 124-232 31-147 (188)
127 PF02390 Methyltransf_4: Putat 99.3 3E-11 6.6E-16 97.9 13.0 105 125-231 17-133 (195)
128 COG2890 HemK Methylase of poly 99.3 9.7E-11 2.1E-15 100.2 16.4 128 128-285 113-267 (280)
129 PF03291 Pox_MCEL: mRNA cappin 99.3 1.7E-11 3.8E-16 106.9 11.9 107 125-232 62-187 (331)
130 PRK03612 spermidine synthase; 99.3 6E-11 1.3E-15 110.3 16.1 108 124-231 296-415 (521)
131 PLN02781 Probable caffeoyl-CoA 99.3 4.7E-11 1E-15 99.8 13.9 103 125-231 68-178 (234)
132 KOG2899 Predicted methyltransf 99.3 3.4E-11 7.4E-16 97.2 11.7 152 124-279 57-255 (288)
133 PRK01581 speE spermidine synth 99.3 1.7E-10 3.8E-15 100.3 17.0 138 124-282 149-298 (374)
134 TIGR03704 PrmC_rel_meth putati 99.3 1.1E-10 2.4E-15 98.6 15.5 124 126-280 87-239 (251)
135 TIGR00563 rsmB ribosomal RNA s 99.3 3.8E-11 8.3E-16 109.3 13.1 111 124-235 237-372 (426)
136 PRK04457 spermidine synthase; 99.3 3.1E-11 6.6E-16 102.6 11.4 108 124-232 65-178 (262)
137 PRK15128 23S rRNA m(5)C1962 me 99.3 1.2E-10 2.6E-15 104.3 15.7 109 125-233 220-341 (396)
138 KOG3045 Predicted RNA methylas 99.3 6.1E-11 1.3E-15 96.6 12.4 120 116-280 169-290 (325)
139 PRK14904 16S rRNA methyltransf 99.3 3E-11 6.5E-16 110.6 11.5 109 124-235 249-381 (445)
140 KOG1975 mRNA cap methyltransfe 99.3 1.9E-11 4.2E-16 102.5 9.2 122 111-232 102-238 (389)
141 PF08704 GCD14: tRNA methyltra 99.3 1.7E-10 3.6E-15 96.2 14.6 127 124-281 39-171 (247)
142 PRK14903 16S rRNA methyltransf 99.3 5.1E-11 1.1E-15 108.3 12.5 110 124-235 236-370 (431)
143 PRK03522 rumB 23S rRNA methylu 99.3 2.6E-10 5.7E-15 99.8 16.4 137 125-298 173-310 (315)
144 TIGR00446 nop2p NOL1/NOP2/sun 99.3 6.8E-11 1.5E-15 100.8 12.4 109 124-234 70-202 (264)
145 PRK10901 16S rRNA methyltransf 99.2 9.8E-11 2.1E-15 106.6 13.2 108 124-234 243-375 (427)
146 COG2521 Predicted archaeal met 99.2 1.8E-11 4E-16 98.2 7.3 143 124-284 133-280 (287)
147 PLN02366 spermidine synthase 99.2 3.8E-10 8.3E-15 97.6 15.6 107 124-230 90-205 (308)
148 smart00650 rADc Ribosomal RNA 99.2 1E-10 2.2E-15 93.1 10.9 98 124-229 12-111 (169)
149 TIGR00417 speE spermidine synt 99.2 3.4E-10 7.4E-15 96.9 14.4 108 124-231 71-186 (270)
150 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.2 1.6E-10 3.4E-15 96.6 11.5 165 124-300 55-256 (256)
151 PF01596 Methyltransf_3: O-met 99.2 2.5E-10 5.3E-15 93.1 12.3 113 113-231 35-155 (205)
152 PF01739 CheR: CheR methyltran 99.2 1.3E-10 2.9E-15 93.8 10.5 107 125-231 31-175 (196)
153 PRK14902 16S rRNA methyltransf 99.2 2.4E-10 5.3E-15 104.7 13.0 108 124-234 249-382 (444)
154 KOG1499 Protein arginine N-met 99.2 2.1E-10 4.6E-15 98.1 11.5 105 123-229 58-165 (346)
155 PLN02476 O-methyltransferase 99.2 5.6E-10 1.2E-14 94.5 13.6 103 125-231 118-228 (278)
156 TIGR00479 rumA 23S rRNA (uraci 99.2 1.1E-09 2.4E-14 100.2 16.2 136 124-294 291-430 (431)
157 KOG1500 Protein arginine N-met 99.2 4.8E-10 1E-14 94.7 12.5 135 90-229 140-280 (517)
158 COG0220 Predicted S-adenosylme 99.2 8.7E-10 1.9E-14 90.9 13.5 149 127-281 50-222 (227)
159 PRK10909 rsmD 16S rRNA m(2)G96 99.1 6.8E-10 1.5E-14 90.1 12.1 105 125-232 53-160 (199)
160 TIGR02085 meth_trns_rumB 23S r 99.1 3.1E-09 6.8E-14 95.1 17.4 137 125-298 233-370 (374)
161 COG4122 Predicted O-methyltran 99.1 6.9E-10 1.5E-14 90.4 11.6 114 113-232 49-167 (219)
162 KOG1661 Protein-L-isoaspartate 99.1 7.7E-10 1.7E-14 87.6 11.0 109 117-231 74-193 (237)
163 COG1092 Predicted SAM-dependen 99.1 3.2E-09 6.9E-14 94.0 15.7 118 117-235 210-340 (393)
164 PF10294 Methyltransf_16: Puta 99.1 1.3E-09 2.9E-14 86.8 12.2 111 123-234 43-159 (173)
165 PF05185 PRMT5: PRMT5 arginine 99.1 1.8E-09 3.9E-14 98.1 14.4 101 126-228 187-294 (448)
166 PLN02672 methionine S-methyltr 99.1 1.6E-09 3.4E-14 106.7 14.7 106 126-231 119-278 (1082)
167 KOG2904 Predicted methyltransf 99.1 5.8E-09 1.3E-13 86.0 15.3 120 124-244 147-298 (328)
168 PHA03412 putative methyltransf 99.1 5.8E-10 1.3E-14 91.5 8.7 94 125-226 49-158 (241)
169 COG1041 Predicted DNA modifica 99.1 3.7E-09 8E-14 91.0 13.8 130 124-286 196-335 (347)
170 COG1352 CheR Methylase of chem 99.1 3E-09 6.6E-14 89.6 13.1 107 125-231 96-241 (268)
171 PRK10611 chemotaxis methyltran 99.1 8E-10 1.7E-14 94.3 9.4 107 125-231 115-262 (287)
172 PLN02589 caffeoyl-CoA O-methyl 99.0 2.6E-09 5.6E-14 89.4 11.7 113 113-231 69-190 (247)
173 KOG1269 SAM-dependent methyltr 99.0 1.2E-09 2.5E-14 96.2 8.8 206 75-281 55-267 (364)
174 COG2263 Predicted RNA methylas 99.0 7.2E-09 1.6E-13 81.2 10.9 72 124-201 44-115 (198)
175 PF10672 Methyltrans_SAM: S-ad 99.0 4.5E-09 9.8E-14 89.5 10.7 110 125-234 123-241 (286)
176 PF07942 N2227: N2227-like pro 99.0 5.2E-08 1.1E-12 82.1 16.7 145 125-281 56-242 (270)
177 TIGR00095 RNA methyltransferas 99.0 1.6E-08 3.5E-13 81.7 13.0 105 125-231 49-159 (189)
178 PRK05031 tRNA (uracil-5-)-meth 99.0 1.3E-08 2.8E-13 90.7 13.5 135 126-298 207-357 (362)
179 KOG3178 Hydroxyindole-O-methyl 99.0 3.9E-09 8.5E-14 90.5 9.4 150 126-285 178-334 (342)
180 PRK01544 bifunctional N5-gluta 98.9 1.3E-08 2.9E-13 94.3 13.3 106 124-231 346-462 (506)
181 PF11968 DUF3321: Putative met 98.9 9E-09 1.9E-13 82.8 10.3 119 126-281 52-181 (219)
182 PRK11727 23S rRNA mA1618 methy 98.9 3E-08 6.6E-13 86.0 14.3 152 125-282 114-293 (321)
183 PF02527 GidB: rRNA small subu 98.9 6.6E-08 1.4E-12 77.4 13.4 99 126-231 49-148 (184)
184 TIGR02143 trmA_only tRNA (urac 98.9 9.3E-08 2E-12 84.9 15.7 135 126-298 198-348 (353)
185 PRK14896 ksgA 16S ribosomal RN 98.9 1.4E-08 3E-13 86.4 9.9 73 124-203 28-100 (258)
186 PF03141 Methyltransf_29: Puta 98.9 1.2E-09 2.7E-14 97.6 3.2 101 127-235 119-223 (506)
187 PLN02823 spermine synthase 98.8 4.5E-08 9.7E-13 85.7 12.2 106 124-230 102-219 (336)
188 PRK00274 ksgA 16S ribosomal RN 98.8 1.4E-08 3.1E-13 86.9 8.8 72 124-201 41-112 (272)
189 KOG3191 Predicted N6-DNA-methy 98.8 8.6E-07 1.9E-11 68.9 17.3 129 125-282 43-194 (209)
190 TIGR00478 tly hemolysin TlyA f 98.8 1.6E-07 3.5E-12 77.7 14.4 136 124-282 74-218 (228)
191 KOG1331 Predicted methyltransf 98.8 5.2E-09 1.1E-13 87.1 5.2 106 116-233 37-145 (293)
192 PF01170 UPF0020: Putative RNA 98.8 1E-07 2.2E-12 76.3 12.3 105 124-229 27-149 (179)
193 PTZ00338 dimethyladenosine tra 98.8 3.9E-08 8.5E-13 84.8 10.0 74 124-201 35-108 (294)
194 COG3963 Phospholipid N-methylt 98.8 1.3E-07 2.8E-12 72.5 11.1 104 124-234 47-159 (194)
195 TIGR03439 methyl_EasF probable 98.8 1.5E-06 3.3E-11 75.5 19.0 117 113-230 65-196 (319)
196 PRK00536 speE spermidine synth 98.8 5E-07 1.1E-11 76.1 15.4 99 124-231 71-171 (262)
197 PF02475 Met_10: Met-10+ like- 98.7 1E-07 2.3E-12 77.1 10.5 99 124-228 100-199 (200)
198 KOG1709 Guanidinoacetate methy 98.7 1.8E-07 3.8E-12 74.6 11.0 119 122-243 98-218 (271)
199 COG0357 GidB Predicted S-adeno 98.7 9.6E-07 2.1E-11 71.9 15.2 131 126-285 68-199 (215)
200 PF03602 Cons_hypoth95: Conser 98.7 7.1E-08 1.5E-12 77.4 8.5 106 125-232 42-154 (183)
201 TIGR00755 ksgA dimethyladenosi 98.7 1.7E-07 3.6E-12 79.6 11.2 81 115-202 18-102 (253)
202 PF04672 Methyltransf_19: S-ad 98.7 3.3E-07 7.1E-12 76.7 12.3 162 111-278 52-233 (267)
203 PF09243 Rsm22: Mitochondrial 98.7 7.7E-07 1.7E-11 76.2 14.9 132 111-247 18-155 (274)
204 PF01564 Spermine_synth: Sperm 98.7 3.1E-07 6.8E-12 77.3 12.3 108 124-231 75-191 (246)
205 PRK04338 N(2),N(2)-dimethylgua 98.7 1.2E-07 2.6E-12 84.8 10.2 99 126-230 58-157 (382)
206 COG2520 Predicted methyltransf 98.7 9.9E-07 2.1E-11 76.7 15.5 108 124-236 187-294 (341)
207 COG2265 TrmA SAM-dependent met 98.7 7.9E-07 1.7E-11 80.5 15.0 112 114-232 281-397 (432)
208 KOG3987 Uncharacterized conser 98.7 1.3E-08 2.7E-13 80.6 2.9 94 125-230 112-206 (288)
209 KOG1663 O-methyltransferase [S 98.7 7.5E-07 1.6E-11 72.1 12.8 112 114-231 64-183 (237)
210 KOG3420 Predicted RNA methylas 98.6 3.9E-08 8.4E-13 73.4 4.8 76 124-202 47-122 (185)
211 PF05958 tRNA_U5-meth_tr: tRNA 98.6 2.9E-07 6.3E-12 81.7 11.1 73 113-188 184-256 (352)
212 PF08123 DOT1: Histone methyla 98.6 1E-07 2.2E-12 77.6 7.1 116 114-230 30-157 (205)
213 COG0421 SpeE Spermidine syntha 98.6 4.5E-07 9.8E-12 77.3 11.2 106 125-230 76-189 (282)
214 PRK11933 yebU rRNA (cytosine-C 98.6 5.9E-07 1.3E-11 82.2 12.5 110 124-235 112-246 (470)
215 KOG2352 Predicted spermine/spe 98.6 5.1E-07 1.1E-11 80.8 11.0 104 127-233 50-163 (482)
216 COG0293 FtsJ 23S rRNA methylas 98.5 2.4E-06 5.1E-11 68.8 12.1 121 111-244 29-172 (205)
217 COG0742 N6-adenine-specific me 98.5 2.2E-06 4.8E-11 67.9 11.2 107 125-232 43-155 (187)
218 KOG2915 tRNA(1-methyladenosine 98.5 1.7E-05 3.7E-10 65.8 15.9 97 124-226 104-204 (314)
219 PF04816 DUF633: Family of unk 98.4 2.9E-06 6.3E-11 69.1 11.0 121 129-280 1-123 (205)
220 COG0500 SmtA SAM-dependent met 98.4 4.3E-06 9.3E-11 65.3 11.9 104 129-236 52-160 (257)
221 PF01728 FtsJ: FtsJ-like methy 98.4 9.1E-07 2E-11 71.2 7.0 97 125-234 23-142 (181)
222 PRK00050 16S rRNA m(4)C1402 me 98.4 1E-06 2.2E-11 75.6 7.5 87 114-204 7-100 (296)
223 PRK04148 hypothetical protein; 98.4 4.2E-06 9.2E-11 62.9 9.8 93 125-232 16-110 (134)
224 PF02384 N6_Mtase: N-6 DNA Met 98.4 2.9E-06 6.2E-11 74.4 10.4 110 124-233 45-185 (311)
225 KOG0820 Ribosomal RNA adenine 98.4 2.9E-06 6.3E-11 70.3 9.1 84 114-201 46-130 (315)
226 TIGR00308 TRM1 tRNA(guanine-26 98.4 2.8E-06 6.1E-11 75.6 9.7 100 126-231 45-147 (374)
227 COG0030 KsgA Dimethyladenosine 98.3 3.7E-06 8.1E-11 70.4 9.2 87 115-207 19-107 (259)
228 COG3897 Predicted methyltransf 98.3 6.2E-06 1.3E-10 65.1 9.4 104 124-234 78-182 (218)
229 PF03059 NAS: Nicotianamine sy 98.3 1.5E-05 3.2E-10 67.6 12.2 105 126-231 121-230 (276)
230 COG0144 Sun tRNA and rRNA cyto 98.3 2.2E-05 4.8E-10 69.8 13.7 110 124-235 155-292 (355)
231 PF09445 Methyltransf_15: RNA 98.3 1.8E-06 4E-11 67.3 5.8 71 128-200 2-75 (163)
232 PF13679 Methyltransf_32: Meth 98.2 2.2E-05 4.7E-10 60.4 11.4 101 124-230 24-130 (141)
233 COG4262 Predicted spermidine s 98.2 2E-05 4.4E-10 67.9 11.4 108 124-231 288-407 (508)
234 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.4E-05 3E-10 77.5 11.6 107 125-232 190-348 (702)
235 PF01269 Fibrillarin: Fibrilla 98.1 9.6E-05 2.1E-09 60.0 13.1 133 124-281 72-212 (229)
236 TIGR02987 met_A_Alw26 type II 98.1 4.8E-05 1E-09 71.5 12.6 75 125-201 31-119 (524)
237 COG4798 Predicted methyltransf 98.1 5.5E-05 1.2E-09 59.7 10.2 143 124-280 47-204 (238)
238 KOG2798 Putative trehalase [Ca 98.0 0.00022 4.8E-09 60.5 14.1 149 125-283 150-339 (369)
239 KOG4589 Cell division protein 98.0 0.00011 2.5E-09 57.6 11.5 116 124-252 68-205 (232)
240 COG4076 Predicted RNA methylas 98.0 9.2E-06 2E-10 63.6 4.8 99 126-229 33-133 (252)
241 PF07091 FmrO: Ribosomal RNA m 98.0 4.4E-05 9.6E-10 63.2 8.7 107 124-235 104-212 (251)
242 KOG3115 Methyltransferase-like 98.0 6.1E-05 1.3E-09 59.9 9.0 108 125-232 60-184 (249)
243 COG2384 Predicted SAM-dependen 98.0 0.00032 7E-09 56.8 13.3 111 115-229 7-118 (226)
244 PF13578 Methyltransf_24: Meth 98.0 3E-06 6.6E-11 61.7 1.4 99 130-231 1-105 (106)
245 PRK11760 putative 23S rRNA C24 97.9 0.00028 6.1E-09 61.3 12.9 87 124-224 210-296 (357)
246 PF06962 rRNA_methylase: Putat 97.9 0.00011 2.4E-09 55.6 9.0 113 150-280 1-124 (140)
247 PF00398 RrnaAD: Ribosomal RNA 97.9 6.2E-05 1.3E-09 64.2 8.6 96 116-219 20-119 (262)
248 COG0116 Predicted N6-adenine-s 97.9 0.00025 5.5E-09 62.4 12.4 107 124-231 190-344 (381)
249 KOG2187 tRNA uracil-5-methyltr 97.9 2.6E-05 5.6E-10 70.4 6.1 105 124-233 382-492 (534)
250 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 8.8E-05 1.9E-09 63.9 9.2 109 124-234 84-222 (283)
251 COG0275 Predicted S-adenosylme 97.8 0.0007 1.5E-08 57.5 13.3 84 114-200 11-102 (314)
252 KOG2730 Methylase [General fun 97.8 5.1E-05 1.1E-09 61.0 5.5 75 125-201 94-172 (263)
253 KOG3201 Uncharacterized conser 97.8 4.4E-05 9.5E-10 58.4 4.8 110 125-234 29-143 (201)
254 COG1189 Predicted rRNA methyla 97.7 0.0015 3.1E-08 53.7 13.5 143 124-284 78-227 (245)
255 TIGR01444 fkbM_fam methyltrans 97.7 0.00014 3E-09 55.9 7.3 57 128-186 1-58 (143)
256 KOG4058 Uncharacterized conser 97.6 0.00047 1E-08 52.0 8.6 122 105-232 51-173 (199)
257 PLN02668 indole-3-acetate carb 97.6 0.0044 9.5E-08 55.3 16.0 110 125-234 63-240 (386)
258 COG4627 Uncharacterized protei 97.6 1.4E-05 3E-10 60.6 0.1 55 178-232 31-87 (185)
259 PF05971 Methyltransf_10: Prot 97.6 0.00055 1.2E-08 58.7 9.4 80 126-206 103-189 (299)
260 PF01861 DUF43: Protein of unk 97.5 0.024 5.1E-07 47.0 18.0 132 124-280 43-177 (243)
261 COG1889 NOP1 Fibrillarin-like 97.5 0.0049 1.1E-07 49.3 13.3 135 124-281 75-214 (231)
262 TIGR00006 S-adenosyl-methyltra 97.5 0.00076 1.7E-08 58.2 9.5 87 114-203 8-101 (305)
263 PF03141 Methyltransf_29: Puta 97.5 0.00026 5.6E-09 64.1 6.7 98 127-231 367-467 (506)
264 KOG0822 Protein kinase inhibit 97.5 0.0013 2.7E-08 59.8 10.3 129 101-232 339-479 (649)
265 COG1064 AdhP Zn-dependent alco 97.4 0.0012 2.6E-08 57.7 9.2 96 124-234 165-262 (339)
266 KOG1122 tRNA and rRNA cytosine 97.4 0.0027 5.7E-08 56.3 11.2 108 124-234 240-374 (460)
267 COG5459 Predicted rRNA methyla 97.3 0.0044 9.5E-08 53.7 11.5 110 124-235 112-229 (484)
268 PF03492 Methyltransf_7: SAM d 97.3 0.007 1.5E-07 53.4 13.1 160 124-283 15-255 (334)
269 PF04989 CmcI: Cephalosporin h 97.3 0.00092 2E-08 54.1 6.5 103 125-231 32-147 (206)
270 PF06859 Bin3: Bicoid-interact 97.2 0.0002 4.3E-09 51.4 1.6 82 194-282 1-93 (110)
271 KOG1501 Arginine N-methyltrans 97.0 0.0014 3E-08 58.2 6.0 99 124-223 65-166 (636)
272 TIGR00027 mthyl_TIGR00027 meth 97.0 0.12 2.6E-06 44.0 17.5 153 126-279 82-248 (260)
273 cd00315 Cyt_C5_DNA_methylase C 96.9 0.02 4.2E-07 49.3 11.8 122 128-276 2-138 (275)
274 KOG1562 Spermidine synthase [A 96.8 0.0078 1.7E-07 51.0 8.4 108 124-231 120-236 (337)
275 KOG2793 Putative N2,N2-dimethy 96.7 0.014 3.1E-07 48.8 9.1 109 125-234 86-202 (248)
276 PHA01634 hypothetical protein 96.5 0.038 8.2E-07 40.9 9.0 72 124-200 27-98 (156)
277 PF03269 DUF268: Caenorhabditi 96.4 0.0065 1.4E-07 46.8 5.0 102 126-236 2-116 (177)
278 PRK09424 pntA NAD(P) transhydr 96.4 0.027 5.8E-07 52.4 10.0 100 124-232 163-286 (509)
279 PF11312 DUF3115: Protein of u 96.4 0.014 3.1E-07 50.1 7.2 108 127-234 88-245 (315)
280 KOG1099 SAM-dependent methyltr 96.4 0.011 2.3E-07 48.3 6.0 111 125-248 41-180 (294)
281 PF02005 TRM: N2,N2-dimethylgu 96.3 0.035 7.5E-07 49.8 10.0 103 125-231 49-154 (377)
282 PRK10742 putative methyltransf 96.3 0.039 8.4E-07 46.1 9.3 74 128-202 91-172 (250)
283 COG3129 Predicted SAM-dependen 96.2 0.021 4.6E-07 46.7 7.1 84 122-206 75-165 (292)
284 COG1565 Uncharacterized conser 96.2 0.03 6.5E-07 49.1 8.4 66 106-171 57-132 (370)
285 PRK01747 mnmC bifunctional tRN 96.1 0.029 6.2E-07 54.5 8.9 108 124-231 56-206 (662)
286 PF01795 Methyltransf_5: MraW 96.1 0.011 2.3E-07 51.2 5.2 85 114-201 8-100 (310)
287 PF03514 GRAS: GRAS domain fam 96.1 0.31 6.6E-06 43.9 14.6 105 124-231 109-244 (374)
288 PF02636 Methyltransf_28: Puta 96.1 0.024 5.2E-07 48.1 7.2 58 113-170 4-72 (252)
289 KOG2920 Predicted methyltransf 96.1 0.013 2.8E-07 49.6 5.3 112 120-231 111-234 (282)
290 PRK11524 putative methyltransf 96.0 0.028 6.1E-07 48.6 7.5 57 113-170 196-252 (284)
291 COG0286 HsdM Type I restrictio 96.0 0.11 2.4E-06 48.4 11.7 109 125-234 186-329 (489)
292 COG3510 CmcI Cephalosporin hyd 95.9 0.048 1E-06 43.4 7.5 102 125-233 69-182 (237)
293 COG1063 Tdh Threonine dehydrog 95.9 0.16 3.6E-06 45.2 11.9 101 125-236 168-274 (350)
294 cd08283 FDH_like_1 Glutathione 95.8 0.072 1.6E-06 48.1 9.8 104 124-232 183-307 (386)
295 PF01555 N6_N4_Mtase: DNA meth 95.8 0.028 6E-07 46.5 6.6 53 113-166 179-231 (231)
296 PRK13699 putative methylase; P 95.8 0.045 9.8E-07 45.6 7.6 58 113-171 151-208 (227)
297 PF07757 AdoMet_MTase: Predict 95.7 0.018 3.9E-07 41.2 4.0 33 125-158 58-90 (112)
298 PF00145 DNA_methylase: C-5 cy 95.6 0.34 7.3E-06 42.5 12.9 121 128-277 2-138 (335)
299 COG1867 TRM1 N2,N2-dimethylgua 95.5 0.096 2.1E-06 46.1 8.5 100 126-231 53-154 (380)
300 PRK13699 putative methylase; P 95.5 0.05 1.1E-06 45.3 6.6 52 179-230 3-71 (227)
301 KOG2539 Mitochondrial/chloropl 95.4 0.08 1.7E-06 47.9 8.1 111 124-237 199-321 (491)
302 KOG2198 tRNA cytosine-5-methyl 95.4 0.25 5.5E-06 43.5 10.9 109 124-234 154-299 (375)
303 KOG1227 Putative methyltransfe 95.4 0.02 4.3E-07 48.7 3.9 105 125-235 194-301 (351)
304 COG0270 Dcm Site-specific DNA 95.1 0.19 4.1E-06 44.4 9.6 123 126-275 3-141 (328)
305 TIGR00561 pntA NAD(P) transhyd 95.1 0.07 1.5E-06 49.6 7.0 97 125-230 163-283 (511)
306 PF00107 ADH_zinc_N: Zinc-bind 95.1 0.028 6E-07 42.1 3.7 86 135-234 1-92 (130)
307 cd08254 hydroxyacyl_CoA_DH 6-h 95.0 0.25 5.4E-06 43.4 10.1 95 124-232 164-264 (338)
308 KOG3924 Putative protein methy 95.0 0.14 3E-06 45.4 8.0 142 90-235 159-312 (419)
309 TIGR00675 dcm DNA-methyltransf 94.7 0.37 8E-06 42.3 10.3 120 129-276 1-135 (315)
310 KOG2651 rRNA adenine N-6-methy 94.7 0.22 4.7E-06 44.0 8.4 43 125-167 153-195 (476)
311 COG3315 O-Methyltransferase in 94.6 1 2.3E-05 39.1 12.7 165 113-279 79-262 (297)
312 KOG2918 Carboxymethyl transfer 94.6 2 4.3E-05 37.1 13.7 166 113-281 76-277 (335)
313 PTZ00357 methyltransferase; Pr 94.5 0.76 1.6E-05 44.0 11.9 99 127-226 702-830 (1072)
314 cd05188 MDR Medium chain reduc 94.3 0.17 3.8E-06 42.6 7.1 97 124-234 133-235 (271)
315 PF10354 DUF2431: Domain of un 94.2 1.1 2.4E-05 35.3 10.9 128 132-283 3-154 (166)
316 PRK09880 L-idonate 5-dehydroge 94.1 0.2 4.2E-06 44.5 7.3 96 125-232 169-267 (343)
317 KOG1596 Fibrillarin and relate 94.1 0.43 9.3E-06 39.5 8.4 101 123-234 154-264 (317)
318 PF07279 DUF1442: Protein of u 93.7 1.6 3.5E-05 35.6 11.1 103 125-234 41-151 (218)
319 COG4301 Uncharacterized conser 93.7 3.6 7.9E-05 34.4 15.6 105 125-231 78-193 (321)
320 PF11599 AviRa: RRNA methyltra 93.5 0.2 4.4E-06 40.7 5.5 107 124-231 50-214 (246)
321 PF05430 Methyltransf_30: S-ad 93.3 0.084 1.8E-06 39.4 3.0 77 177-282 32-112 (124)
322 KOG2671 Putative RNA methylase 93.3 0.083 1.8E-06 45.9 3.2 108 124-232 207-355 (421)
323 PF02254 TrkA_N: TrkA-N domain 93.3 1.3 2.8E-05 32.2 9.4 85 134-231 4-96 (116)
324 PF04445 SAM_MT: Putative SAM- 93.0 0.26 5.6E-06 41.0 5.7 77 127-204 77-161 (234)
325 KOG0024 Sorbitol dehydrogenase 93.0 1.3 2.8E-05 38.6 9.8 99 124-234 168-276 (354)
326 KOG1253 tRNA methyltransferase 92.8 0.099 2.1E-06 47.6 3.1 102 125-231 109-216 (525)
327 COG0686 Ald Alanine dehydrogen 92.7 0.5 1.1E-05 40.8 6.9 100 125-230 167-267 (371)
328 PF05711 TylF: Macrocin-O-meth 92.6 1.4 3.1E-05 37.0 9.7 108 125-234 74-215 (248)
329 cd08232 idonate-5-DH L-idonate 92.6 1.1 2.4E-05 39.3 9.7 94 125-232 165-263 (339)
330 TIGR01202 bchC 2-desacetyl-2-h 92.4 0.84 1.8E-05 39.8 8.5 88 125-233 144-233 (308)
331 cd08230 glucose_DH Glucose deh 92.3 0.95 2.1E-05 40.3 9.0 98 124-234 171-272 (355)
332 cd08237 ribitol-5-phosphate_DH 91.8 1.7 3.8E-05 38.4 9.9 93 124-232 162-257 (341)
333 TIGR02822 adh_fam_2 zinc-bindi 91.7 1.8 3.9E-05 38.1 9.8 91 124-232 164-255 (329)
334 PRK10458 DNA cytosine methylas 91.3 2.8 6.1E-05 38.9 10.8 43 126-168 88-130 (467)
335 TIGR03366 HpnZ_proposed putati 91.1 1.6 3.5E-05 37.4 8.8 95 124-232 119-219 (280)
336 KOG2352 Predicted spermine/spe 90.8 1.1 2.5E-05 41.0 7.6 109 124-234 294-419 (482)
337 PRK11524 putative methyltransf 90.5 0.32 6.9E-06 42.0 3.8 55 177-231 8-80 (284)
338 TIGR03451 mycoS_dep_FDH mycoth 90.2 2.7 5.9E-05 37.4 9.6 99 124-233 175-278 (358)
339 PRK15001 SAM-dependent 23S rib 90.0 14 0.0003 33.3 13.8 115 127-249 46-160 (378)
340 cd08239 THR_DH_like L-threonin 89.9 3.8 8.2E-05 36.0 10.3 99 124-233 162-264 (339)
341 KOG2078 tRNA modification enzy 89.3 0.47 1E-05 42.6 3.8 63 122-185 246-308 (495)
342 cd08234 threonine_DH_like L-th 89.1 2.6 5.7E-05 36.9 8.6 95 124-232 158-258 (334)
343 cd08245 CAD Cinnamyl alcohol d 89.0 3.1 6.6E-05 36.4 9.0 95 124-232 161-257 (330)
344 TIGR00518 alaDH alanine dehydr 89.0 0.86 1.9E-05 41.0 5.5 101 125-231 166-267 (370)
345 PF11899 DUF3419: Protein of u 89.0 0.77 1.7E-05 41.3 5.1 58 176-233 275-336 (380)
346 cd08281 liver_ADH_like1 Zinc-d 88.9 2.2 4.7E-05 38.3 8.1 96 124-233 190-292 (371)
347 PLN03154 putative allyl alcoho 88.8 3.5 7.6E-05 36.6 9.2 98 124-232 157-259 (348)
348 cd08261 Zn_ADH7 Alcohol dehydr 88.6 4.5 9.7E-05 35.5 9.8 97 124-232 158-259 (337)
349 COG1568 Predicted methyltransf 88.6 4.2 9.1E-05 34.7 8.7 104 124-231 151-260 (354)
350 cd08255 2-desacetyl-2-hydroxye 88.3 2.8 6.1E-05 35.5 8.1 94 124-232 96-191 (277)
351 PLN02586 probable cinnamyl alc 88.2 3.8 8.3E-05 36.6 9.1 96 124-232 182-279 (360)
352 TIGR00497 hsdM type I restrict 88.2 9.3 0.0002 35.9 11.9 110 125-234 217-358 (501)
353 PRK05786 fabG 3-ketoacyl-(acyl 88.2 9.9 0.00022 31.3 11.2 103 125-232 4-136 (238)
354 cd00401 AdoHcyase S-adenosyl-L 88.1 2.2 4.9E-05 38.8 7.5 90 124-233 200-291 (413)
355 cd05278 FDH_like Formaldehyde 88.1 4.4 9.5E-05 35.6 9.5 94 124-231 166-267 (347)
356 TIGR02825 B4_12hDH leukotriene 87.8 3.6 7.8E-05 35.9 8.6 96 124-232 137-238 (325)
357 cd05285 sorbitol_DH Sorbitol d 87.7 4.1 9E-05 35.9 9.0 95 124-232 161-266 (343)
358 PF07109 Mg-por_mtran_C: Magne 87.7 1.6 3.4E-05 30.9 4.9 74 209-284 12-85 (97)
359 COG0541 Ffh Signal recognition 87.4 7.1 0.00015 35.5 10.0 105 125-234 99-224 (451)
360 cd08293 PTGR2 Prostaglandin re 87.0 4 8.7E-05 35.9 8.5 91 127-231 156-254 (345)
361 KOG1098 Putative SAM-dependent 86.5 4.9 0.00011 38.1 8.7 112 124-248 43-175 (780)
362 KOG0023 Alcohol dehydrogenase, 86.3 6.6 0.00014 34.3 8.8 96 124-234 180-282 (360)
363 PLN02514 cinnamyl-alcohol dehy 86.3 5.8 0.00013 35.3 9.2 97 125-233 180-277 (357)
364 cd08294 leukotriene_B4_DH_like 85.9 6.6 0.00014 34.2 9.2 93 124-231 142-241 (329)
365 cd08236 sugar_DH NAD(P)-depend 84.8 8 0.00017 34.0 9.3 95 124-232 158-259 (343)
366 PLN02740 Alcohol dehydrogenase 84.4 5.9 0.00013 35.7 8.3 96 124-233 197-302 (381)
367 TIGR03201 dearomat_had 6-hydro 84.2 9.2 0.0002 33.9 9.4 99 124-233 165-274 (349)
368 PRK10309 galactitol-1-phosphat 84.1 9.7 0.00021 33.6 9.5 96 124-233 159-262 (347)
369 cd01842 SGNH_hydrolase_like_5 84.1 1.2 2.6E-05 35.3 3.2 47 190-236 46-104 (183)
370 PRK03659 glutathione-regulated 84.1 11 0.00024 36.3 10.4 89 127-231 401-498 (601)
371 COG0604 Qor NADPH:quinone redu 84.0 2 4.4E-05 37.9 5.0 99 124-234 141-244 (326)
372 PF04072 LCM: Leucine carboxyl 83.1 12 0.00026 29.9 8.8 81 127-208 80-171 (183)
373 cd08295 double_bond_reductase_ 83.1 7.2 0.00016 34.3 8.3 97 124-232 150-252 (338)
374 PF11899 DUF3419: Protein of u 83.0 3.8 8.2E-05 37.0 6.3 45 124-169 34-78 (380)
375 PRK07576 short chain dehydroge 82.3 19 0.00041 30.4 10.2 74 125-202 8-94 (264)
376 cd08285 NADP_ADH NADP(H)-depen 82.1 12 0.00026 33.1 9.3 99 124-233 165-268 (351)
377 cd08231 MDR_TM0436_like Hypoth 81.7 17 0.00037 32.2 10.2 96 125-232 177-281 (361)
378 cd08233 butanediol_DH_like (2R 81.6 31 0.00067 30.4 11.8 99 124-233 171-274 (351)
379 PF10237 N6-adenineMlase: Prob 81.0 25 0.00053 27.6 9.9 95 124-231 24-123 (162)
380 TIGR02818 adh_III_F_hyde S-(hy 81.0 16 0.00035 32.6 9.8 99 124-233 184-289 (368)
381 cd08298 CAD2 Cinnamyl alcohol 80.9 13 0.00029 32.3 9.1 91 124-232 166-257 (329)
382 PF00106 adh_short: short chai 80.7 18 0.00039 27.8 8.9 76 128-206 2-92 (167)
383 PLN02178 cinnamyl-alcohol dehy 80.5 9.9 0.00022 34.2 8.2 94 125-232 178-274 (375)
384 cd05281 TDH Threonine dehydrog 80.4 13 0.00029 32.6 8.9 97 124-232 162-263 (341)
385 PRK12939 short chain dehydroge 80.2 16 0.00035 30.1 9.1 76 125-204 6-94 (250)
386 PRK10669 putative cation:proto 79.5 21 0.00046 34.0 10.5 90 127-231 418-515 (558)
387 TIGR00936 ahcY adenosylhomocys 79.5 9.6 0.00021 34.7 7.7 90 124-233 193-284 (406)
388 TIGR00853 pts-lac PTS system, 79.4 12 0.00026 26.3 6.7 73 127-226 4-76 (95)
389 PRK06124 gluconate 5-dehydroge 79.0 36 0.00078 28.3 11.2 77 124-204 9-98 (256)
390 TIGR02819 fdhA_non_GSH formald 78.8 25 0.00054 31.9 10.3 102 124-233 184-301 (393)
391 PRK07523 gluconate 5-dehydroge 78.7 23 0.0005 29.5 9.6 76 125-204 9-97 (255)
392 PLN02827 Alcohol dehydrogenase 78.7 12 0.00026 33.7 8.2 96 124-233 192-297 (378)
393 COG2933 Predicted SAM-dependen 78.6 13 0.00029 31.5 7.5 87 124-224 210-296 (358)
394 PRK07326 short chain dehydroge 78.5 31 0.00067 28.2 10.2 74 125-203 5-91 (237)
395 cd08278 benzyl_alcohol_DH Benz 78.3 18 0.00038 32.3 9.2 95 124-232 185-286 (365)
396 TIGR00692 tdh L-threonine 3-de 78.3 19 0.00042 31.6 9.3 97 125-232 161-262 (340)
397 PRK08265 short chain dehydroge 78.2 25 0.00054 29.5 9.6 72 125-203 5-89 (261)
398 COG4017 Uncharacterized protei 78.2 24 0.00052 28.4 8.5 89 124-234 43-132 (254)
399 PRK07814 short chain dehydroge 78.2 35 0.00076 28.6 10.6 75 125-203 9-96 (263)
400 KOG1269 SAM-dependent methyltr 77.9 5.8 0.00013 35.5 5.7 108 125-235 180-317 (364)
401 PF03446 NAD_binding_2: NAD bi 77.5 8.1 0.00018 30.1 6.0 87 128-231 3-94 (163)
402 KOG2912 Predicted DNA methylas 77.1 6.8 0.00015 34.1 5.6 70 130-202 107-186 (419)
403 PF14740 DUF4471: Domain of un 77.0 5.9 0.00013 34.2 5.3 67 192-278 220-286 (289)
404 PRK05476 S-adenosyl-L-homocyst 77.0 12 0.00027 34.2 7.7 90 124-233 210-301 (425)
405 PRK07904 short chain dehydroge 76.9 17 0.00037 30.5 8.2 77 125-204 7-97 (253)
406 PRK07109 short chain dehydroge 76.9 39 0.00085 29.8 10.8 76 125-204 7-95 (334)
407 cd08242 MDR_like Medium chain 76.5 24 0.00052 30.6 9.3 91 124-231 154-245 (319)
408 PRK07533 enoyl-(acyl carrier p 76.4 41 0.00089 28.2 10.5 104 125-232 9-149 (258)
409 PRK08306 dipicolinate synthase 76.3 9.9 0.00021 33.0 6.7 90 125-231 151-241 (296)
410 PRK08324 short chain dehydroge 75.7 21 0.00045 35.1 9.4 103 125-232 421-558 (681)
411 COG5379 BtaA S-adenosylmethion 75.6 11 0.00023 32.5 6.3 46 124-170 62-107 (414)
412 PRK12429 3-hydroxybutyrate deh 75.6 41 0.00088 27.9 10.2 75 126-204 4-91 (258)
413 cd08238 sorbose_phosphate_red 75.6 61 0.0013 29.4 12.0 98 124-230 174-287 (410)
414 PRK07806 short chain dehydroge 75.6 34 0.00075 28.2 9.7 103 125-231 5-134 (248)
415 PF02737 3HCDH_N: 3-hydroxyacy 75.6 39 0.00084 26.9 11.8 95 129-231 2-114 (180)
416 PRK05396 tdh L-threonine 3-deh 75.1 27 0.00058 30.6 9.3 94 125-232 163-264 (341)
417 PLN02494 adenosylhomocysteinas 74.8 11 0.00024 34.9 6.8 89 125-232 253-342 (477)
418 PRK06181 short chain dehydroge 74.7 28 0.00061 29.1 9.1 74 127-204 2-88 (263)
419 cd08300 alcohol_DH_class_III c 74.6 29 0.00063 30.9 9.5 96 124-233 185-290 (368)
420 cd08291 ETR_like_1 2-enoyl thi 74.6 18 0.00039 31.5 8.1 83 135-232 155-243 (324)
421 KOG0821 Predicted ribosomal RN 74.5 8.3 0.00018 31.7 5.2 60 124-186 49-108 (326)
422 COG0863 DNA modification methy 74.5 14 0.0003 31.8 7.2 57 114-171 211-267 (302)
423 cd08279 Zn_ADH_class_III Class 73.9 27 0.00058 31.1 9.1 95 124-232 181-283 (363)
424 cd08263 Zn_ADH10 Alcohol dehyd 73.9 20 0.00043 31.9 8.3 95 124-232 186-288 (367)
425 PF05050 Methyltransf_21: Meth 73.8 7.1 0.00015 30.0 4.8 37 131-167 1-42 (167)
426 PF02558 ApbA: Ketopantoate re 73.6 16 0.00034 27.8 6.6 75 146-233 19-103 (151)
427 PLN03209 translocon at the inn 73.4 89 0.0019 30.0 12.6 79 125-204 79-169 (576)
428 KOG1201 Hydroxysteroid 17-beta 73.3 28 0.00061 30.1 8.4 78 125-207 37-127 (300)
429 PRK06701 short chain dehydroge 73.1 44 0.00095 28.7 9.9 104 125-232 45-182 (290)
430 PRK03562 glutathione-regulated 72.9 16 0.00035 35.4 7.8 89 126-230 400-497 (621)
431 cd08274 MDR9 Medium chain dehy 72.6 32 0.00068 30.2 9.2 92 124-231 176-273 (350)
432 PRK07774 short chain dehydroge 72.3 38 0.00083 28.0 9.2 76 125-204 5-93 (250)
433 PF02086 MethyltransfD12: D12 72.0 9.6 0.00021 32.1 5.5 53 116-169 10-63 (260)
434 cd05564 PTS_IIB_chitobiose_lic 72.0 17 0.00037 25.6 5.9 74 132-231 4-78 (96)
435 PTZ00075 Adenosylhomocysteinas 72.0 29 0.00064 32.3 8.8 89 124-232 252-342 (476)
436 cd08241 QOR1 Quinone oxidoredu 71.7 24 0.00053 30.1 8.2 94 124-232 138-239 (323)
437 cd08240 6_hydroxyhexanoate_dh_ 71.5 64 0.0014 28.3 10.9 94 125-232 175-275 (350)
438 PF07652 Flavi_DEAD: Flaviviru 71.3 45 0.00097 25.7 8.5 108 125-234 4-136 (148)
439 cd08243 quinone_oxidoreductase 71.3 24 0.00051 30.3 8.0 95 124-232 141-239 (320)
440 cd08277 liver_alcohol_DH_like 71.2 27 0.00059 31.1 8.5 98 124-233 183-288 (365)
441 COG0027 PurT Formate-dependent 71.1 12 0.00027 32.5 5.7 136 124-277 10-153 (394)
442 PF05206 TRM13: Methyltransfer 70.8 10 0.00023 32.2 5.3 63 124-188 17-85 (259)
443 cd08235 iditol_2_DH_like L-idi 70.6 33 0.00072 30.0 8.8 95 124-232 164-266 (343)
444 COG1255 Uncharacterized protei 70.5 15 0.00033 26.8 5.2 92 125-234 13-105 (129)
445 cd08301 alcohol_DH_plants Plan 70.3 37 0.00079 30.3 9.1 96 124-233 186-291 (369)
446 TIGR00006 S-adenosyl-methyltra 69.9 3.4 7.3E-05 36.0 2.2 34 209-242 218-251 (305)
447 PRK00066 ldh L-lactate dehydro 69.5 41 0.00089 29.5 9.0 103 124-231 4-122 (315)
448 PRK06035 3-hydroxyacyl-CoA deh 68.9 29 0.00063 29.9 7.9 95 127-228 4-118 (291)
449 PRK09072 short chain dehydroge 68.5 66 0.0014 26.9 9.9 75 125-204 4-90 (263)
450 PRK05708 2-dehydropantoate 2-r 68.2 81 0.0018 27.4 10.6 101 127-235 3-108 (305)
451 cd05283 CAD1 Cinnamyl alcohol 67.9 44 0.00096 29.2 9.0 95 124-232 168-264 (337)
452 cd08286 FDH_like_ADH2 formalde 67.8 46 0.001 29.1 9.2 96 125-232 166-267 (345)
453 PRK09496 trkA potassium transp 67.5 38 0.00082 31.2 8.8 69 124-201 229-304 (453)
454 PRK08267 short chain dehydroge 67.4 41 0.0009 28.0 8.5 72 127-204 2-87 (260)
455 PRK05808 3-hydroxybutyryl-CoA 67.4 30 0.00065 29.7 7.6 94 128-228 5-115 (282)
456 PF02153 PDH: Prephenate dehyd 67.3 17 0.00036 30.9 5.9 77 140-231 2-79 (258)
457 cd08270 MDR4 Medium chain dehy 67.0 39 0.00084 28.9 8.4 90 125-232 132-223 (305)
458 PRK09548 PTS system ascorbate- 66.6 51 0.0011 31.6 9.3 58 125-202 505-562 (602)
459 cd08296 CAD_like Cinnamyl alco 66.4 43 0.00094 29.2 8.6 95 124-232 162-260 (333)
460 PF12692 Methyltransf_17: S-ad 66.4 19 0.0004 27.7 5.2 108 115-231 18-134 (160)
461 PRK06128 oxidoreductase; Provi 66.1 86 0.0019 26.9 11.1 104 125-232 54-192 (300)
462 PRK06182 short chain dehydroge 66.0 62 0.0013 27.3 9.3 70 126-205 3-85 (273)
463 cd08266 Zn_ADH_like1 Alcohol d 65.4 55 0.0012 28.2 9.2 95 124-232 165-266 (342)
464 PRK07417 arogenate dehydrogena 65.4 37 0.00079 29.1 7.8 84 128-227 2-87 (279)
465 cd05289 MDR_like_2 alcohol deh 65.1 64 0.0014 27.3 9.4 93 124-232 143-239 (309)
466 cd05286 QOR2 Quinone oxidoredu 64.8 51 0.0011 28.0 8.7 94 124-232 135-236 (320)
467 cd08282 PFDH_like Pseudomonas 64.5 69 0.0015 28.6 9.7 103 124-232 175-286 (375)
468 PRK00050 16S rRNA m(4)C1402 me 64.4 5.3 0.00011 34.7 2.3 33 209-241 214-246 (296)
469 cd08265 Zn_ADH3 Alcohol dehydr 64.3 59 0.0013 29.2 9.3 97 124-232 202-308 (384)
470 PRK09590 celB cellobiose phosp 64.1 47 0.001 23.8 6.8 77 128-231 3-82 (104)
471 PRK06196 oxidoreductase; Provi 63.7 90 0.0019 27.1 10.1 72 125-204 25-109 (315)
472 KOG0725 Reductases with broad 63.6 95 0.0021 26.5 11.3 81 125-206 7-101 (270)
473 COG5379 BtaA S-adenosylmethion 63.3 17 0.00038 31.3 5.1 74 152-232 290-367 (414)
474 PF00072 Response_reg: Respons 63.2 42 0.00091 23.4 6.7 77 151-232 1-79 (112)
475 cd08246 crotonyl_coA_red croto 62.9 49 0.0011 29.8 8.5 43 124-166 192-236 (393)
476 PRK05872 short chain dehydroge 62.7 73 0.0016 27.4 9.2 75 125-204 8-95 (296)
477 PRK07985 oxidoreductase; Provi 62.4 1E+02 0.0022 26.5 10.3 103 125-231 48-185 (294)
478 PRK07502 cyclohexadienyl dehyd 62.4 37 0.00079 29.5 7.3 89 127-229 7-98 (307)
479 PRK07066 3-hydroxybutyryl-CoA 62.0 35 0.00075 30.1 7.0 94 127-226 8-114 (321)
480 cd05288 PGDH Prostaglandin deh 61.9 60 0.0013 28.1 8.7 98 124-232 144-245 (329)
481 COG1062 AdhC Zn-dependent alco 61.6 84 0.0018 27.9 9.0 97 124-234 184-288 (366)
482 PRK06249 2-dehydropantoate 2-r 61.5 46 0.001 29.0 7.8 100 125-234 4-109 (313)
483 PRK09489 rsmC 16S ribosomal RN 61.0 1.2E+02 0.0026 26.9 11.0 110 125-247 19-128 (342)
484 PRK06079 enoyl-(acyl carrier p 60.8 97 0.0021 25.8 10.1 102 125-232 6-144 (252)
485 PRK05855 short chain dehydroge 60.8 85 0.0018 29.7 10.1 77 125-205 314-403 (582)
486 PF01795 Methyltransf_5: MraW 60.7 3.3 7.2E-05 36.1 0.4 37 208-244 218-254 (310)
487 PRK07454 short chain dehydroge 60.5 61 0.0013 26.6 8.1 76 125-204 5-93 (241)
488 PRK06940 short chain dehydroge 60.3 1.1E+02 0.0023 26.0 10.8 99 128-231 4-125 (275)
489 cd00300 LDH_like L-lactate deh 60.2 70 0.0015 27.8 8.6 97 131-231 3-115 (300)
490 PRK06522 2-dehydropantoate 2-r 59.9 92 0.002 26.7 9.4 97 128-233 2-102 (304)
491 KOG0780 Signal recognition par 59.9 1.3E+02 0.0029 27.3 10.0 104 126-234 101-225 (483)
492 PRK05854 short chain dehydroge 59.5 69 0.0015 27.8 8.6 78 125-204 13-103 (313)
493 cd08268 MDR2 Medium chain dehy 59.3 66 0.0014 27.5 8.5 94 124-232 143-244 (328)
494 PRK07819 3-hydroxybutyryl-CoA 59.2 49 0.0011 28.6 7.4 96 127-229 6-119 (286)
495 PLN00112 malate dehydrogenase 59.1 1E+02 0.0023 28.5 9.8 105 124-232 98-227 (444)
496 PRK08703 short chain dehydroge 59.0 62 0.0013 26.5 7.9 76 125-203 5-96 (239)
497 PRK08213 gluconate 5-dehydroge 59.0 65 0.0014 26.8 8.1 76 125-204 11-99 (259)
498 PRK09260 3-hydroxybutyryl-CoA 58.9 49 0.0011 28.5 7.4 95 128-229 3-115 (288)
499 KOG2360 Proliferation-associat 58.8 25 0.00054 31.6 5.4 63 124-188 212-276 (413)
500 PF03686 UPF0146: Uncharacteri 58.6 25 0.00054 26.2 4.6 90 125-232 13-103 (127)
No 1
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=184.82 Aligned_cols=218 Identities=36% Similarity=0.545 Sum_probs=184.2
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhhhhHhHHHHHHHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCH
Q 022248 79 AMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR 158 (300)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~ 158 (300)
..++...+....++...+..+++..+..|.+.+-.-+..++-. .....|||||||+|..-..+-..++..++++|+++
T Consensus 32 ~n~~~~~~~~~~~p~~~ft~~yne~~~~ykrelFs~i~~~~gk--~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~ 109 (252)
T KOG4300|consen 32 LNYESRQKSDLLIPNSNFTSIYNEIADSYKRELFSGIYYFLGK--SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNE 109 (252)
T ss_pred HHHHhcCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHhcc--cCccceEEecccCCCCcccccCCCCceEEEeCCcH
Confidence 3344555666677888888887777777765444433323221 23456899999999877666545788999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCEE-EEecccCcCC-CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248 159 KMEKYAQTAAVAAGLPLTNFK-FLQAVGEAIP-VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK 236 (300)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 236 (300)
.|-+.+.+.+++.. +.++. |+.++.+++| +++++||.|++.++++.+.|+.+.|+++.|+|+|||++++.+++...
T Consensus 110 ~mee~~~ks~~E~k--~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 110 KMEEIADKSAAEKK--PLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred HHHHHHHHHHhhcc--CcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 99999999998874 35777 9999999998 89999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccCCccc-ccceeeEEecC
Q 022248 237 DGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASL-ISPHVYGIAHK 300 (300)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~-~~~~~~~~~~k 300 (300)
.+.+.+.++....+.++....+|....+..++|+++-|+.++..+......|. ..|++||.+.|
T Consensus 188 y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~~~~kr~~~~ttw~~V~~hi~g~~~k 252 (252)
T KOG4300|consen 188 YGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSIDSCKRFNFGTTWVIVEPHIYGVAVK 252 (252)
T ss_pred chHHHHHHHHHhchhhheeccceEEehhHHHHhhhcccccchhhcccCCceEEEEeccccccccC
Confidence 99999999999999999888899888899999999999999999988888888 78999999876
No 2
>PLN02244 tocopherol O-methyltransferase
Probab=99.94 E-value=4.3e-25 Score=194.45 Aligned_cols=207 Identities=16% Similarity=0.163 Sum_probs=148.3
Q ss_pred hHHHHhhcCCCCchhHHHHHHHHH-----hhh--hHhHHHHHHHHHHHHHHhhc------CCCCeEEEECCCCChhHHHh
Q 022248 77 SMAMLNRLHPPRPDWYEEFYASVM-----NSS--MKSYEAEVAGYKSQLFDNLR------GKAKKVLEIGIGTGPNLKYY 143 (300)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~vLDiGcG~G~~~~~l 143 (300)
..+-+..+.....++|+..|...+ ... ...+.+.-.+...++++.+. .++.+|||||||+|.++..+
T Consensus 57 ~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~L 136 (340)
T PLN02244 57 LKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYL 136 (340)
T ss_pred HHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHH
Confidence 344455555556667776664322 111 12233333445555555543 35689999999999999999
Q ss_pred HhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccC
Q 022248 144 AADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKP 223 (300)
Q Consensus 144 ~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lkp 223 (300)
++..+.+++|+|+|+.+++.++++.+..++. ++++|+++|+..+++++++||+|++..+++|+++...+++++.++|||
T Consensus 137 a~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkp 215 (340)
T PLN02244 137 ARKYGANVKGITLSPVQAARANALAAAQGLS-DKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAP 215 (340)
T ss_pred HHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCC
Confidence 8866789999999999999999998887764 579999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecccCCC----chHHHHHHHhhhhhh-hhhcCCcccchHHHHHHHhcCCcEEEEeeecc
Q 022248 224 GGIYLFVEHVAAKD----GTFLKFWQNVVDPLQ-QIVSDGCHLTRQTGNNISEAGFSSVELGNAFL 284 (300)
Q Consensus 224 gG~l~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 284 (300)
||++++.++..... ..........+..+. ........+.+++.++++++||+.++++.+..
T Consensus 216 GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~ 281 (340)
T PLN02244 216 GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSE 281 (340)
T ss_pred CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcH
Confidence 99999987643211 111111111111111 11122345778999999999999999886543
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.94 E-value=1.1e-25 Score=184.95 Aligned_cols=169 Identities=28% Similarity=0.393 Sum_probs=135.2
Q ss_pred HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC
Q 022248 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV 190 (300)
Q Consensus 113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~ 190 (300)
.|.+.+...+. .++.+|||||||||.++..+++. ...+++|+|+|+.|++.|+++....+.. +++|+++|++.+||
T Consensus 38 ~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~--~i~fv~~dAe~LPf 115 (238)
T COG2226 38 LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ--NVEFVVGDAENLPF 115 (238)
T ss_pred HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc--ceEEEEechhhCCC
Confidence 45555555544 36899999999999999999873 4579999999999999999999888764 49999999999999
Q ss_pred CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHH----H-hhhhhhhhhc---------
Q 022248 191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ----N-VVDPLQQIVS--------- 256 (300)
Q Consensus 191 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~--------- 256 (300)
++++||+|++.+.|++++|.+.+|+|++|+|||||++++.+......+....... + .++.+.....
T Consensus 116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL 195 (238)
T COG2226 116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYL 195 (238)
T ss_pred CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHH
Confidence 9999999999999999999999999999999999999999987766543332222 2 2222222111
Q ss_pred ----CCcccchHHHHHHHhcCCcEEEEeeec
Q 022248 257 ----DGCHLTRQTGNNISEAGFSSVELGNAF 283 (300)
Q Consensus 257 ----~~~~~~~~~~~~l~~aGf~~v~~~~~~ 283 (300)
....+.+++.++++++||+.+..+...
T Consensus 196 ~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~ 226 (238)
T COG2226 196 AESIRRFPDQEELKQMIEKAGFEEVRYENLT 226 (238)
T ss_pred HHHHHhCCCHHHHHHHHHhcCceEEeeEeee
Confidence 124567899999999999988855443
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.94 E-value=1.7e-26 Score=191.89 Aligned_cols=159 Identities=27% Similarity=0.401 Sum_probs=93.0
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++.+..+.. +++++++|++++|+++++||+|++.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~--~i~~v~~da~~lp~~d~sfD~v~~~ 123 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ--NIEFVQGDAEDLPFPDNSFDAVTCS 123 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC--CeeEEEcCHHHhcCCCCceeEEEHH
Confidence 46789999999999999999874 4579999999999999999999988764 8999999999999999999999999
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh----hhhhhhc-------------CCcccchH
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD----PLQQIVS-------------DGCHLTRQ 264 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------~~~~~~~~ 264 (300)
+++++++|....++|++|+|||||+++++++..........++..++. .+..... ..+.+.++
T Consensus 124 fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~ 203 (233)
T PF01209_consen 124 FGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEE 203 (233)
T ss_dssp S-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----------------------------------
T ss_pred hhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999888765444333332221 1111111 12456789
Q ss_pred HHHHHHhcCCcEEEEeeecc
Q 022248 265 TGNNISEAGFSSVELGNAFL 284 (300)
Q Consensus 265 ~~~~l~~aGf~~v~~~~~~~ 284 (300)
+.++|+++||+.++.+....
T Consensus 204 ~~~~l~~~Gf~~v~~~~~~~ 223 (233)
T PF01209_consen 204 LKELLEEAGFKNVEYRPLTF 223 (233)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 99999999999988865544
No 5
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.93 E-value=3e-24 Score=185.95 Aligned_cols=156 Identities=16% Similarity=0.115 Sum_probs=122.0
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
++.+|||||||+|.++..+++ .+.+|+|||+++.+++.|+++....+.. .++.+++++++++++.+++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVT-STIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 567999999999999998886 5779999999999999999887655432 47999999999998888899999999999
Q ss_pred cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHH-----HHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248 205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW-----QNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL 279 (300)
Q Consensus 205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 279 (300)
+|+.++..+++++.++|||||.+++.+.+........... ....... ......+++++++.++|+++||+++++
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~g-th~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKG-THQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCC-CcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999999986553221111111 1111111 111123678899999999999999888
Q ss_pred eeec
Q 022248 280 GNAF 283 (300)
Q Consensus 280 ~~~~ 283 (300)
.-..
T Consensus 288 ~G~~ 291 (322)
T PLN02396 288 AGFV 291 (322)
T ss_pred eeeE
Confidence 6433
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.91 E-value=1.1e-22 Score=172.73 Aligned_cols=160 Identities=20% Similarity=0.216 Sum_probs=123.2
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHH--cCCCCCCEEEEecccCcCCCCCCcccEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIPVSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 199 (300)
.++.+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++... ... .+++.++++|++.+|+++++||+|+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~-~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC-YKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhcc-CCCeEEEEcccccCCCCCCCEeEEE
Confidence 46789999999999999888764 346999999999999999877532 111 2479999999999999999999999
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh----hhhhh------------hhcCCcccch
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV----DPLQQ------------IVSDGCHLTR 263 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~----~~~~~------------~~~~~~~~~~ 263 (300)
+.+++++++++..+++++.|+|||||++++.++..............++ .+... .....+.+.+
T Consensus 151 ~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~ 230 (261)
T PLN02233 151 MGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGE 230 (261)
T ss_pred EecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHH
Confidence 9999999999999999999999999999999987654322221111111 01100 0012367889
Q ss_pred HHHHHHHhcCCcEEEEeeecc
Q 022248 264 QTGNNISEAGFSSVELGNAFL 284 (300)
Q Consensus 264 ~~~~~l~~aGf~~v~~~~~~~ 284 (300)
++.++|+++||+.++......
T Consensus 231 el~~ll~~aGF~~~~~~~~~~ 251 (261)
T PLN02233 231 ELEKLALEAGFSSAKHYEISG 251 (261)
T ss_pred HHHHHHHHCCCCEEEEEEcCC
Confidence 999999999999988766443
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.90 E-value=8.1e-22 Score=165.31 Aligned_cols=167 Identities=22% Similarity=0.274 Sum_probs=128.5
Q ss_pred HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191 (300)
Q Consensus 115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 191 (300)
...++..+. .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.++++....++ ++++++.+|++.++++
T Consensus 34 ~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 34 RKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL--HNVELVHGNAMELPFD 111 (231)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEEechhcCCCC
Confidence 344444444 45789999999999999999874 456999999999999999999877665 4899999999998888
Q ss_pred CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh----hhh-------------hh
Q 022248 192 DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD----PLQ-------------QI 254 (300)
Q Consensus 192 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~----~~~-------------~~ 254 (300)
+++||+|++.++++++++...+++++.++|+|||++++.+........+...+..++. ... ..
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE 191 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999988655433222222111110 000 00
Q ss_pred hcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248 255 VSDGCHLTRQTGNNISEAGFSSVELGNAF 283 (300)
Q Consensus 255 ~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 283 (300)
....+.+.+++.++|+++||+.++++...
T Consensus 192 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 192 STRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 11235677899999999999999887654
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.90 E-value=2.8e-22 Score=161.76 Aligned_cols=162 Identities=27% Similarity=0.375 Sum_probs=129.1
Q ss_pred HHHHhhc-CCCCeEEEECCCCChhHHHhHhC-------CCceEEEEcCCHHHHHHHHHHHHHcCCCCC-CEEEEecccCc
Q 022248 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLT-NFKFLQAVGEA 187 (300)
Q Consensus 117 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~~giD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~d~~~ 187 (300)
.++..+. ..+.++||++||||..+..+.+. .+.+|+++|+++.|+..++++.++.++... ++.|+++|+++
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 3444443 46799999999999999999873 236899999999999999999988877532 49999999999
Q ss_pred CCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHH----Hhhhhhhhhhc-------
Q 022248 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ----NVVDPLQQIVS------- 256 (300)
Q Consensus 188 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------- 256 (300)
+||++.+||+.++.+.+.+++++++.++|++|+|||||++.+.++..........+.+ ..++.+..+..
T Consensus 171 LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYq 250 (296)
T KOG1540|consen 171 LPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQ 250 (296)
T ss_pred CCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhh
Confidence 9999999999999999999999999999999999999999999987665333322222 22222222221
Q ss_pred ------CCcccchHHHHHHHhcCCcEEE
Q 022248 257 ------DGCHLTRQTGNNISEAGFSSVE 278 (300)
Q Consensus 257 ------~~~~~~~~~~~~l~~aGf~~v~ 278 (300)
..+.+.+++..+.+++||..+.
T Consensus 251 YLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 251 YLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 2345678999999999999887
No 9
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.89 E-value=2.7e-22 Score=171.90 Aligned_cols=161 Identities=26% Similarity=0.452 Sum_probs=121.1
Q ss_pred ccccCCCchhhhhhhh--cccCCcccCCCCCCCCCCCChHHHHhhcCCCCchhHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q 022248 41 KSCCCGSRRHFIQGAS--TALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQL 118 (300)
Q Consensus 41 ~~~~c~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (300)
.++.|.++|+|+.+++ ++++|. +.+.++.|++..+|+..+. .|+ +.+. |.. +.+.+..+
T Consensus 17 ~~~~C~~~h~fd~a~~Gy~~ll~~----~~~~~~~~~d~~~~~~ar~----~fl--------~~g~--y~~-l~~~i~~~ 77 (272)
T PRK11088 17 NSWICPQNHQFDCAKEGYVNLLPV----QHKRSKDPGDNKEMMQARR----AFL--------DAGH--YQP-LRDAVANL 77 (272)
T ss_pred CEEEcCCCCCCccccCceEEeccc----cccCCCCCCcCHHHHHHHH----HHH--------HCCC--hHH-HHHHHHHH
Confidence 3599999999999987 888887 6677788899999998764 222 1111 222 22222222
Q ss_pred HH-hhcCCCCeEEEECCCCChhHHHhHhCC----CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248 119 FD-NLRGKAKKVLEIGIGTGPNLKYYAADT----DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (300)
Q Consensus 119 ~~-~~~~~~~~vLDiGcG~G~~~~~l~~~~----~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 193 (300)
+. .+.....+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++. +++.|.++|+..+|++++
T Consensus 78 l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~~~ 150 (272)
T PRK11088 78 LAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFADQ 150 (272)
T ss_pred HHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCcCC
Confidence 32 233455789999999999999887631 247999999999999998763 478899999999999999
Q ss_pred cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
+||+|++.+... .++++.|+|||||+++++.+..
T Consensus 151 sfD~I~~~~~~~-------~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 151 SLDAIIRIYAPC-------KAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ceeEEEEecCCC-------CHHHHHhhccCCCEEEEEeCCC
Confidence 999999876532 3589999999999999987543
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.88 E-value=2.5e-22 Score=162.16 Aligned_cols=157 Identities=20% Similarity=0.214 Sum_probs=124.3
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||||||.|.++..+++ .++.|+|+|+++.+++.|+.+..+.++ .+++.+...+++....++||+|+|..+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr-~Ga~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~edl~~~~~~FDvV~cmEV 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLAR-LGASVTGIDASEKPIEVAKLHALESGV---NIDYRQATVEDLASAGGQFDVVTCMEV 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHH-CCCeeEEecCChHHHHHHHHhhhhccc---cccchhhhHHHHHhcCCCccEEEEhhH
Confidence 3789999999999999999997 468999999999999999999998886 578888888888766689999999999
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHH-Hhh-hhh--hhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ-NVV-DPL--QQIVSDGCHLTRQTGNNISEAGFSSVEL 279 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 279 (300)
++|++|++.+++.+.+.+||||.+++++.++........... +++ ... .......+..++|+...+..+|+.+...
T Consensus 134 lEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~ 213 (243)
T COG2227 134 LEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDR 213 (243)
T ss_pred HHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEee
Confidence 999999999999999999999999999987654433322221 111 111 1111123445678889999999998877
Q ss_pred eeecc
Q 022248 280 GNAFL 284 (300)
Q Consensus 280 ~~~~~ 284 (300)
.....
T Consensus 214 ~g~~y 218 (243)
T COG2227 214 KGLTY 218 (243)
T ss_pred cceEe
Confidence 65443
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.87 E-value=4.6e-21 Score=163.07 Aligned_cols=159 Identities=19% Similarity=0.267 Sum_probs=123.7
Q ss_pred HHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (300)
Q Consensus 116 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 194 (300)
..++..+. .++.+|||||||+|..+..++...+.+++|+|+++.+++.|+++.... .++.+..+|+...++++++
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~----~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK----NKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC----CceEEEECCcccCCCCCCC
Confidence 34444443 577899999999999999888755779999999999999999876431 4799999999988998899
Q ss_pred ccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248 195 VDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA 272 (300)
Q Consensus 195 ~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 272 (300)
||+|++..+++|++ +...++++++++|||||++++.++.................. ......+.+++.++|+++
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~a 193 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKK----RKYTLIPIQEYGDLIKSC 193 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHh----cCCCCCCHHHHHHHHHHC
Confidence 99999998888875 778999999999999999999987554322222222221111 112356778999999999
Q ss_pred CCcEEEEeee
Q 022248 273 GFSSVELGNA 282 (300)
Q Consensus 273 Gf~~v~~~~~ 282 (300)
||+.++.+..
T Consensus 194 GF~~v~~~d~ 203 (263)
T PTZ00098 194 NFQNVVAKDI 203 (263)
T ss_pred CCCeeeEEeC
Confidence 9999988753
No 12
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.86 E-value=2.5e-20 Score=157.48 Aligned_cols=168 Identities=16% Similarity=0.215 Sum_probs=123.1
Q ss_pred HHHHHHhhcCCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191 (300)
Q Consensus 115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 191 (300)
...++.....++.+|||||||+|.++..+++ .++.+++|+|+|+.|++.|++++...+.. .+++++++|+..++++
T Consensus 46 ~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-~~v~~~~~d~~~~~~~ 124 (247)
T PRK15451 46 IGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVIEGDIRDIAIE 124 (247)
T ss_pred HHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEeCChhhCCCC
Confidence 3344444445778999999999999888876 36789999999999999999999877653 4799999999888764
Q ss_pred CCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhh-----------hh---hh
Q 022248 192 DASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL-----------QQ---IV 255 (300)
Q Consensus 192 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---~~ 255 (300)
.+|+|+++.+++++++ ...++++++++|||||.|++.+...........++..+.... .. ..
T Consensus 125 --~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~ 202 (247)
T PRK15451 125 --NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSML 202 (247)
T ss_pred --CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5999999999999864 357899999999999999999865443322222111111000 00 00
Q ss_pred --cCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248 256 --SDGCHLTRQTGNNISEAGFSSVELGNAFLS 285 (300)
Q Consensus 256 --~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 285 (300)
.....+.++..++|+++||+.++......+
T Consensus 203 ~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~~~ 234 (247)
T PRK15451 203 ENVMLTDSVETHKARLHKAGFEHSELWFQCFN 234 (247)
T ss_pred HhhcccCCHHHHHHHHHHcCchhHHHHHHHHh
Confidence 112346789999999999998776655444
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.86 E-value=9.5e-21 Score=160.93 Aligned_cols=165 Identities=24% Similarity=0.254 Sum_probs=124.6
Q ss_pred HHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCC
Q 022248 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDA 193 (300)
Q Consensus 115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~ 193 (300)
+..+++.+..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++....++. ++++++++|+.+++ +.++
T Consensus 34 ~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~-~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 34 LDRLLAELPPRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVS-DNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc-cceEEEEcCHHHHhhhcCC
Confidence 34455555556789999999999999999875 679999999999999999999888764 57999999998763 5678
Q ss_pred cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh----hhh-----hhhcCCcccchH
Q 022248 194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD----PLQ-----QIVSDGCHLTRQ 264 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~ 264 (300)
+||+|++..+++++.++..+++++.++|||||++++..++.... .....+...+. ... ........++++
T Consensus 112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 190 (255)
T PRK11036 112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGL-LMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQ 190 (255)
T ss_pred CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHH-HHHHHHccChHHHHhcCccccccCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999887554211 01111110000 000 000122456789
Q ss_pred HHHHHHhcCCcEEEEeee
Q 022248 265 TGNNISEAGFSSVELGNA 282 (300)
Q Consensus 265 ~~~~l~~aGf~~v~~~~~ 282 (300)
+.++|+++||+++...-.
T Consensus 191 l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 191 VYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHHCCCeEeeeeeE
Confidence 999999999998866543
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.86 E-value=2.9e-20 Score=158.03 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=114.3
Q ss_pred HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD 192 (300)
Q Consensus 115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 192 (300)
...+++.+. .++.+|||||||+|.++..+++. ++.+++|+|+|+.|++.|++. +++++.+|++.++ ++
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~ 87 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PK 87 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CC
Confidence 344555554 46789999999999999999874 467999999999999999763 5788999998775 56
Q ss_pred CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh---------hhhhhhhcCCcccch
Q 022248 193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV---------DPLQQIVSDGCHLTR 263 (300)
Q Consensus 193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 263 (300)
++||+|++..++++++++..++++++++|||||++++..+.... ........... ............+.+
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 166 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD-APSHAAVRALARREPWAKLLRDIPFRVGAVVQTPA 166 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC-ChhHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence 79999999999999999999999999999999999997543211 11111111111 000000112345788
Q ss_pred HHHHHHHhcCCcEEEEe
Q 022248 264 QTGNNISEAGFSSVELG 280 (300)
Q Consensus 264 ~~~~~l~~aGf~~v~~~ 280 (300)
++.++|+++||++...+
T Consensus 167 ~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 167 GYAELLTDAGCKVDAWE 183 (255)
T ss_pred HHHHHHHhCCCeEEEEe
Confidence 99999999999855444
No 15
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.85 E-value=6.4e-20 Score=154.45 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=120.5
Q ss_pred HHHhhcCCCCeEEEECCCCChhHHHhHhC---CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248 118 LFDNLRGKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (300)
Q Consensus 118 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 194 (300)
+......++.+|||+|||+|.++..+++. ++.+++|+|+|+.|++.|+++++..+.. .++.++++|+..++++ .
T Consensus 46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~--~ 122 (239)
T TIGR00740 46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDIRHVEIK--N 122 (239)
T ss_pred HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECChhhCCCC--C
Confidence 33344457789999999999999988863 5789999999999999999998776543 4789999999988765 5
Q ss_pred ccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhh--------------hh--hc
Q 022248 195 VDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQ--------------QI--VS 256 (300)
Q Consensus 195 ~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~ 256 (300)
+|+|++.++++++++ ...++++++++|||||.+++.+.....+......+........ .. ..
T Consensus 123 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 202 (239)
T TIGR00740 123 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENV 202 (239)
T ss_pred CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcc
Confidence 899999999999853 5679999999999999999998765443332222222111100 00 01
Q ss_pred CCcccchHHHHHHHhcCCcEEEEeee
Q 022248 257 DGCHLTRQTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 257 ~~~~~~~~~~~~l~~aGf~~v~~~~~ 282 (300)
....+.+++..+++++||..+++...
T Consensus 203 ~~~~s~~~~~~~l~~aGF~~~~~~~~ 228 (239)
T TIGR00740 203 MRTDSIETHKARLKNVGFSHVELWFQ 228 (239)
T ss_pred CCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 12457789999999999997665433
No 16
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.85 E-value=3.6e-20 Score=161.56 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=115.9
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||||||+|.++..++......|+|+|+|+.++.+++...+..+. ..++.++.++++.+++ ++.||+|+|..+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-DQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-CCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 46789999999999999999876555799999999998776554333222 1479999999999988 789999999999
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF 283 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 283 (300)
++|..++..++++++++|+|||.+++.+.....+.....+....+..+...+ ...+.+++.++|+++||+.+++....
T Consensus 199 l~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~--~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 199 LYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY--FIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred hhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce--eCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 9999999999999999999999999876543322211100001111111110 13467899999999999999887543
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.85 E-value=5.3e-21 Score=151.14 Aligned_cols=140 Identities=26% Similarity=0.302 Sum_probs=106.6
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||||||.|.++..+++. +.+++|+|+++.+++. . ++.....+....+.+++.||+|+|..+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-------R-----NVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-------T-----TSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-------h-----hhhhhhhhhhhhhccccchhhHhhHHH
Confidence 57889999999999999999764 5599999999999888 1 333444444445556789999999999
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 278 (300)
++|++++..+++++.++|||||++++.++.... .....+...........+..+++.+++..+++++||++++
T Consensus 88 l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 88 LEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD--PSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS--HHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc--hhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999976532 1222222211111111233577889999999999999886
No 18
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.84 E-value=4e-20 Score=160.72 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=115.9
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
.++.+|||||||+|.++..+++. .+.+++++|+++.|++.|+++... .+++++.+|+++++++++.||+|++..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEEcC
Confidence 35689999999999998888763 457899999999999999987542 367899999999999889999999999
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 282 (300)
+++++++....++++.++|||||++++.+..... .+..+.+...+ ....+.+++.++|+++||+.++++..
T Consensus 187 ~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~-----~~~~r~~~~~~----~~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT-----FWLSRFFADVW----MLFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc-----hhHHHHhhhhh----ccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 9999999999999999999999999987654321 11111111111 12346789999999999999988754
No 19
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.84 E-value=8.3e-20 Score=155.16 Aligned_cols=166 Identities=20% Similarity=0.239 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC
Q 022248 111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (300)
Q Consensus 111 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 189 (300)
-.+.+..+++++. .++.+|||||||.|.++..+++..+.+|+|+++|+.+.+.++++++..|+. +++++...|..+++
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~-~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE-DRVEVRLQDYRDLP 125 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS-STEEEEES-GGG--
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEeeccccC
Confidence 3445556666655 688999999999999999999877889999999999999999999999986 68999999988775
Q ss_pred CCCCcccEEEEcccccCc--ccHHHHHHHHHHcccCCcEEEEEecccCCCchHH------HHHHHhhhhhhhhhcCCccc
Q 022248 190 VSDASVDAVVGTLVLCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFL------KFWQNVVDPLQQIVSDGCHL 261 (300)
Q Consensus 190 ~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 261 (300)
. +||.|++..+++|+ .+...+++++.++|||||++++-..+........ .++.+++-+ .+...+
T Consensus 126 ~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFP-----gg~lps 197 (273)
T PF02353_consen 126 G---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFP-----GGYLPS 197 (273)
T ss_dssp ----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTST-----TS---B
T ss_pred C---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCC-----CCCCCC
Confidence 3 89999999999999 5778999999999999999998776554332222 344444322 223456
Q ss_pred chHHHHHHHhcCCcEEEEeeeccC
Q 022248 262 TRQTGNNISEAGFSSVELGNAFLS 285 (300)
Q Consensus 262 ~~~~~~~l~~aGf~~v~~~~~~~~ 285 (300)
..++...++++||+++..+....+
T Consensus 198 ~~~~~~~~~~~~l~v~~~~~~~~h 221 (273)
T PF02353_consen 198 LSEILRAAEDAGLEVEDVENLGRH 221 (273)
T ss_dssp HHHHHHHHHHTT-EEEEEEE-HHH
T ss_pred HHHHHHHHhcCCEEEEEEEEcCcC
Confidence 778888999999999888765443
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.84 E-value=6.9e-20 Score=143.51 Aligned_cols=143 Identities=27% Similarity=0.419 Sum_probs=111.6
Q ss_pred CCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEE
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG 200 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~ 200 (300)
++.+|||+|||+|.++..+++ .++.+++|+|+++.+++.|+++++..++. +++|+++|+.+++ ++ +.||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~--ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD--NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST--TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc--ccceEEeehhccccccC-CCeeEEEE
Confidence 578999999999999999994 45789999999999999999999988874 8999999999987 55 89999999
Q ss_pred cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh-hhhhhh--cCCcccchHHHHHHHhcC
Q 022248 201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD-PLQQIV--SDGCHLTRQTGNNISEAG 273 (300)
Q Consensus 201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~l~~aG 273 (300)
..+++++.++..+++++.++|++||.+++.+..... .....+..... ....+. .... ..++|..+|++||
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ag 152 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHND--ELPEQLEELMNLYSEVWSMIYIGN-DKEEWKYILEEAG 152 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSH--HHHHHHHHHHHHHHHHHHHCC----CCCGHHHHHHHTT
T ss_pred cCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHH--HHHHHHHHHHHHHHHHhhhhhccc-CHHHHHHHHHhcC
Confidence 999999999999999999999999999998876211 11122221111 011110 0111 6779999999998
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.84 E-value=1.5e-19 Score=166.97 Aligned_cols=151 Identities=23% Similarity=0.307 Sum_probs=120.8
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||||||+|..+..+++..+.+++|+|+|+.+++.|+++..... .++.|+.+|+...++++++||+|++..+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~---~~v~~~~~d~~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK---CSVEFEVADCTKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC---CceEEEEcCcccCCCCCCCEEEEEECCc
Confidence 4577999999999999998887667899999999999999988765332 4789999999998888889999999999
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 282 (300)
++|++++..++++++++|||||.+++.++......... .+...+.. ......+.+++.++++++||+++.++..
T Consensus 342 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~----~g~~~~~~~~~~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 342 ILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSP-EFAEYIKQ----RGYDLHDVQAYGQMLKDAGFDDVIAEDR 415 (475)
T ss_pred ccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcH-HHHHHHHh----cCCCCCCHHHHHHHHHHCCCeeeeeecc
Confidence 99999999999999999999999999987553321111 11111111 1224567789999999999999877643
No 22
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.83 E-value=1.6e-19 Score=155.88 Aligned_cols=157 Identities=14% Similarity=0.095 Sum_probs=112.8
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++++|||||||+|.++..++......++|+|+|+.|+.+++...+.... ..++.+...++++++.. +.||+|++..+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~-~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN-DKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-CCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 46789999999999999888865445799999999999876443222221 14788888898888764 58999999999
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF 283 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 283 (300)
++|++++..++++++++|||||.|++.+............-...+..+... ....+..++..+|+++||+.+++....
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv--~flpS~~~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNV--YFIPSVSALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccc--ccCCCHHHHHHHHHHCCCeEEEEEecc
Confidence 999999999999999999999999997654322110000000001111111 123467899999999999999887543
Q ss_pred c
Q 022248 284 L 284 (300)
Q Consensus 284 ~ 284 (300)
.
T Consensus 276 ~ 276 (314)
T TIGR00452 276 K 276 (314)
T ss_pred C
Confidence 3
No 23
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.83 E-value=5.5e-19 Score=149.92 Aligned_cols=141 Identities=21% Similarity=0.312 Sum_probs=112.4
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
+..+|||+|||+|.++..+++ .+.+++++|+|+.+++.++++. ....++++|++.+++++++||+|+++.++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~V~s~~~l 113 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPMLAQARQKD-------AADHYLAGDIESLPLATATFDLAWSNLAV 113 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHHHHHHHhhC-------CCCCEEEcCcccCcCCCCcEEEEEECchh
Confidence 467999999999999988876 4679999999999999998764 23568899999999988999999999999
Q ss_pred cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcE
Q 022248 205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSS 276 (300)
Q Consensus 205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 276 (300)
++++++..++.++.++|+|||.+++..+......++...+.... .......+.+.+++.+++...|++.
T Consensus 114 ~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 114 QWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVD---ERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred hhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhc---cCCccccCCCHHHHHHHHHhCCcee
Confidence 99999999999999999999999999876544333333332211 1111234667889999999988873
No 24
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.83 E-value=3.1e-19 Score=153.27 Aligned_cols=153 Identities=29% Similarity=0.370 Sum_probs=120.2
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||+|||+|..+..++.. ...+++++|+++.+++.|+++....++ .+++++.+|++.++++++.||+|++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~--~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY--TNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC--CCEEEEEcchhhCCCCCCceeEEEEc
Confidence 46789999999999988776653 345899999999999999999887776 48999999999999888899999999
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN 281 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 281 (300)
.++++.++...+++++.++|||||++++.+...... ....+..... ..........+.+++.++|+++||..+++..
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE--LPEEIRNDAE-LYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC--CCHHHHHhHH-HHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 999999999999999999999999999988654332 1111111111 1111112345678999999999999887753
No 25
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.83 E-value=3.5e-20 Score=133.08 Aligned_cols=95 Identities=34% Similarity=0.486 Sum_probs=84.4
Q ss_pred EEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccCccc
Q 022248 130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209 (300)
Q Consensus 130 LDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~ 209 (300)
||+|||+|..+..+++..+.+++++|+++.+++.++++.... .+.+..+|++.+|+++++||+|++..+++++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccccccccccccccceeeccC
Confidence 899999999999999876889999999999999999987543 466999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccCCcEEEE
Q 022248 210 VDMTLQEVRRVLKPGGIYLF 229 (300)
Q Consensus 210 ~~~~l~~~~~~LkpgG~l~~ 229 (300)
...+++++.|+|||||++++
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999986
No 26
>PRK05785 hypothetical protein; Provisional
Probab=99.82 E-value=1.3e-18 Score=144.74 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=105.8
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
++.+|||||||+|.++..+++..+.+++|+|+|+.|++.|+++ ..++++|++.+|+++++||+|++.+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~~~l 120 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSSFAL 120 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc----------cceEEechhhCCCCCCCEEEEEecChh
Confidence 4789999999999999999875456999999999999999864 135789999999999999999999999
Q ss_pred cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHH----HHHhhhhhhhhhc-------------CCcccchHHHH
Q 022248 205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKF----WQNVVDPLQQIVS-------------DGCHLTRQTGN 267 (300)
Q Consensus 205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~~ 267 (300)
++++|++..+++++|+|||. +++++...........+ .....+.+..... ..+.+.+++.+
T Consensus 121 ~~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~ 198 (226)
T PRK05785 121 HASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE 198 (226)
T ss_pred hccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999994 22333333222211111 1112222211111 12456789999
Q ss_pred HHHhcCCcEEEEeeec
Q 022248 268 NISEAGFSSVELGNAF 283 (300)
Q Consensus 268 ~l~~aGf~~v~~~~~~ 283 (300)
+|+++| ..+..+...
T Consensus 199 ~~~~~~-~~~~~~~~~ 213 (226)
T PRK05785 199 IFEKYA-DIKVYEERG 213 (226)
T ss_pred HHHHHh-CceEEEEcc
Confidence 999974 656665543
No 27
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=3.5e-19 Score=149.09 Aligned_cols=164 Identities=23% Similarity=0.274 Sum_probs=134.5
Q ss_pred HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191 (300)
Q Consensus 113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 191 (300)
..++.+++.+. .++.+|||||||.|.+++.+++..+.+|+|+++|+++.+.++++++..|+. .+++++..|..++.
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~-~~v~v~l~d~rd~~-- 135 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE-DNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC-cccEEEeccccccc--
Confidence 33444555554 789999999999999999999988999999999999999999999999986 68999999988875
Q ss_pred CCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHhhhhhhhhhcCCcccchHHHH
Q 022248 192 DASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNVVDPLQQIVSDGCHLTRQTGN 267 (300)
Q Consensus 192 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (300)
+.||-|++..+++|+.. .+.+++.+.++|+|||.+++...+..... ....|+.+++-+ ++.+.+..++.+
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFP-----gG~lPs~~~i~~ 209 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFP-----GGELPSISEILE 209 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCC-----CCcCCCHHHHHH
Confidence 44999999999999965 88999999999999999999887665533 345555554433 223455688999
Q ss_pred HHHhcCCcEEEEeeeccC
Q 022248 268 NISEAGFSSVELGNAFLS 285 (300)
Q Consensus 268 ~l~~aGf~~v~~~~~~~~ 285 (300)
...++||.+...+....+
T Consensus 210 ~~~~~~~~v~~~~~~~~h 227 (283)
T COG2230 210 LASEAGFVVLDVESLRPH 227 (283)
T ss_pred HHHhcCcEEehHhhhcHH
Confidence 999999999888766555
No 28
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.82 E-value=2.6e-18 Score=144.71 Aligned_cols=157 Identities=29% Similarity=0.392 Sum_probs=121.3
Q ss_pred CCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++...++. .++.++.+|+...+++.+.||+|++..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-cCeEEEecccccCCCCCCCccEEEEec
Confidence 56899999999999999998754 489999999999999999988665443 478999999988887778999999999
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh----hhhhhhhh-------------cCCcccchHH
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV----VDPLQQIV-------------SDGCHLTRQT 265 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------------~~~~~~~~~~ 265 (300)
+++++.+...+++++.++|+|||.+++.+................ ........ .....+.+++
T Consensus 130 ~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (239)
T PRK00216 130 GLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEEL 209 (239)
T ss_pred ccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999886554432221111111 00000000 0124567889
Q ss_pred HHHHHhcCCcEEEEeee
Q 022248 266 GNNISEAGFSSVELGNA 282 (300)
Q Consensus 266 ~~~l~~aGf~~v~~~~~ 282 (300)
.++|+++||+.+++...
T Consensus 210 ~~~l~~aGf~~~~~~~~ 226 (239)
T PRK00216 210 AAMLEEAGFERVRYRNL 226 (239)
T ss_pred HHHHHhCCCceeeeeee
Confidence 99999999999888754
No 29
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.81 E-value=8.8e-20 Score=148.34 Aligned_cols=152 Identities=19% Similarity=0.175 Sum_probs=115.4
Q ss_pred CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCC----CEEEEecccCcCCCCCCcccEEEEc
Q 022248 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT----NFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
+.+|||+|||+|.++..|++ .+++|+|||+++.|++.|+++......... ++++.+.+++.+. +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHh-hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 57899999999999999996 678999999999999999999544333222 4677778877764 459999999
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHH-H---hhhhhhhhhcCCcccchHHHHHHHhcCCcEE
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ-N---VVDPLQQIVSDGCHLTRQTGNNISEAGFSSV 277 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 277 (300)
.+++|+.|+..++..+.++|||||.+++.+.++.....+...+. + .+-+-+....+.+..+.++..++..+++++.
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~ 245 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVN 245 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchh
Confidence 99999999999999999999999999999876644322221111 1 1111222223346678899999999999976
Q ss_pred EEee
Q 022248 278 ELGN 281 (300)
Q Consensus 278 ~~~~ 281 (300)
.+..
T Consensus 246 ~v~G 249 (282)
T KOG1270|consen 246 DVVG 249 (282)
T ss_pred hhhc
Confidence 6653
No 30
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.80 E-value=8.9e-19 Score=146.15 Aligned_cols=147 Identities=20% Similarity=0.246 Sum_probs=117.7
Q ss_pred CeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccccc
Q 022248 127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~ 205 (300)
++|||||||+|.++..+++. ++.+++|+|+|+.+++.+++++...++. +++.++..|+...+++ ++||+|++..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 37999999999999998874 3579999999999999999999888775 5899999998776664 5899999999999
Q ss_pred CcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248 206 SVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLS 285 (300)
Q Consensus 206 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 285 (300)
|+.+...+++++.++|||||++++.+......... ..........+..+|.++++++||+.++......+
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI----------EHEETTSYLVTREEWAELLARNNLRVVEGVDASLE 148 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc----------cccccccccCCHHHHHHHHHHCCCeEEEeEECcHh
Confidence 99999999999999999999999988643211000 00001112456789999999999999888765443
No 31
>PRK08317 hypothetical protein; Provisional
Probab=99.80 E-value=6.1e-18 Score=142.41 Aligned_cols=157 Identities=24% Similarity=0.360 Sum_probs=118.0
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||+|||+|.++..+++. +..+++|+|+++.+++.++++.... ..++.++.+|+...+++++.||+|++.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL---GPNVEFVRGDADGLPFPDGSFDAVRSD 94 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC---CCceEEEecccccCCCCCCCceEEEEe
Confidence 46789999999999999999874 4579999999999999998873222 247899999998888888999999999
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEecccCC---CchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK---DGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 278 (300)
.+++++.++..+++++.++|||||.+++.+..... .......+.+....... .....+...++.++|+++||+.+.
T Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~~~ 173 (241)
T PRK08317 95 RVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD-HFADPWLGRRLPGLFREAGLTDIE 173 (241)
T ss_pred chhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHcCCCcee
Confidence 99999999999999999999999999998753211 01011112222111111 112233456899999999999888
Q ss_pred Eeeecc
Q 022248 279 LGNAFL 284 (300)
Q Consensus 279 ~~~~~~ 284 (300)
++...+
T Consensus 174 ~~~~~~ 179 (241)
T PRK08317 174 VEPYTL 179 (241)
T ss_pred EEEEEE
Confidence 776544
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.80 E-value=3.5e-18 Score=139.37 Aligned_cols=139 Identities=22% Similarity=0.257 Sum_probs=108.4
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....++. ++++.+.|+..++++ +.||+|++..++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD--NLHTAVVDLNNLTFD-GEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--cceEEecChhhCCcC-CCcCEEEEecch
Confidence 5689999999999999999875 679999999999999999998887763 688999999887764 679999999999
Q ss_pred cCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248 205 CSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN 281 (300)
Q Consensus 205 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 281 (300)
++++ +...+++++.++|||||++++.......+.. .. . .....++..++.+.++ ||+++..+.
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~--------~~---~-~~~~~~~~~el~~~~~--~~~~~~~~~ 170 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--------CT---V-GFPFAFKEGELRRYYE--GWEMVKYNE 170 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC--------CC---C-CCCCccCHHHHHHHhC--CCeEEEeeC
Confidence 8875 4678999999999999997765533222110 00 0 0012346678888886 899888754
No 33
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.79 E-value=9.9e-19 Score=129.67 Aligned_cols=105 Identities=28% Similarity=0.364 Sum_probs=89.0
Q ss_pred CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcCCCCCCcccEEEEcc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAVVGTL 202 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~ 202 (300)
|+.+|||||||+|.++..+++ .++.+++|+|+++.+++.|++++...+.. ++++++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS-DRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECccccCccc-CCCCCEEEECC
Confidence 468999999999999999998 58889999999999999999999666654 6999999999 33443 35699999998
Q ss_pred -cccCc---ccHHHHHHHHHHcccCCcEEEEEe
Q 022248 203 -VLCSV---KDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 203 -~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.++++ ++...+++++.+.|+|||++++.+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 45433 455788999999999999999865
No 34
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.79 E-value=1.8e-17 Score=138.14 Aligned_cols=157 Identities=31% Similarity=0.419 Sum_probs=119.4
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||+|||+|.++..+++... .+++++|+++.+++.++++.. . ..++.++.+|+.+.+++++.||+|++.
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~-~~~i~~~~~d~~~~~~~~~~~D~i~~~ 113 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L-PLNIEFIQADAEALPFEDNSFDAVTIA 113 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c-CCCceEEecchhcCCCCCCcEEEEEEe
Confidence 3678999999999999999887544 589999999999999988765 1 247899999999888877899999999
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH----hhhhhhhhh-------------cCCcccchH
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN----VVDPLQQIV-------------SDGCHLTRQ 264 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------~~~~~~~~~ 264 (300)
+++++..+...+++++.++|+|||++++.+............... ......... ...+.+.++
T Consensus 114 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (223)
T TIGR01934 114 FGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEE 193 (223)
T ss_pred eeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999988654432211111111 111001000 012456789
Q ss_pred HHHHHHhcCCcEEEEeeecc
Q 022248 265 TGNNISEAGFSSVELGNAFL 284 (300)
Q Consensus 265 ~~~~l~~aGf~~v~~~~~~~ 284 (300)
|.++|+++||+.+.++....
T Consensus 194 ~~~~l~~aGf~~~~~~~~~~ 213 (223)
T TIGR01934 194 LAAMLKEAGFEEVRYRSLTF 213 (223)
T ss_pred HHHHHHHcCCccceeeeeec
Confidence 99999999999988875543
No 35
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.78 E-value=7.9e-18 Score=141.76 Aligned_cols=143 Identities=24% Similarity=0.318 Sum_probs=113.4
Q ss_pred CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.+.+|||+|||+|.++..+++. +..+++++|+++.+++.++++.. +++.++.+|++..++++++||+|++..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 4579999999999999998874 45679999999999999987653 3688999999999888899999999999
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 282 (300)
++++.++..++.++.++|+|||.+++.++....... +...... ....+.+.+++.+++..+ |..+.+...
T Consensus 108 l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 177 (240)
T TIGR02072 108 LQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHE----LRQSFGQ----HGLRYLSLDELKALLKNS-FELLTLEEE 177 (240)
T ss_pred hhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHH----HHHHHHH----hccCCCCHHHHHHHHHHh-cCCcEEEEE
Confidence 999999999999999999999999998765433211 1111110 223456677899999888 887666543
No 36
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.78 E-value=1.8e-17 Score=137.69 Aligned_cols=152 Identities=24% Similarity=0.207 Sum_probs=110.4
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|++++...+.. .++.|..+|+..++ ++||+|++..+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVA-GNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChhhCC---CCcCEEEEhhH
Confidence 35789999999999999999864 569999999999999999998776543 47999999998876 78999999999
Q ss_pred ccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248 204 LCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN 281 (300)
Q Consensus 204 l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 281 (300)
+++++ +...+++++.+++++++++.+.. .........++...+...........++.+++.++++++||+++..+.
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFAP--KTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEECC--CchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence 98875 35678999999998776655432 111111111222221111111112345788999999999999988764
Q ss_pred e
Q 022248 282 A 282 (300)
Q Consensus 282 ~ 282 (300)
.
T Consensus 207 ~ 207 (219)
T TIGR02021 207 V 207 (219)
T ss_pred c
Confidence 3
No 37
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.78 E-value=2.7e-17 Score=140.19 Aligned_cols=153 Identities=14% Similarity=0.209 Sum_probs=110.9
Q ss_pred HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD 192 (300)
Q Consensus 115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 192 (300)
...++..+. .++.+|||||||+|.++..+++. ++.+++|+|+|+.+++.|+++. +++.|+.+|+..+. ++
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC-CC
Confidence 344455444 46789999999999999999874 4679999999999999998874 47889999988764 45
Q ss_pred CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh--hhhhhh------hcCCcccchH
Q 022248 193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV--DPLQQI------VSDGCHLTRQ 264 (300)
Q Consensus 193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~ 264 (300)
++||+|+++.+++++++...+++++.++|||||.+++..+....... ...+.... ..+... ......+..+
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 170 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPS-HVLMREVAENGPWEQNLPDRGARRAPLPPPHA 170 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHH-HHHHHHHHccCchHHHhccccccCcCCCCHHH
Confidence 68999999999999999999999999999999999996532221111 11111111 000000 0112345678
Q ss_pred HHHHHHhcCCcE
Q 022248 265 TGNNISEAGFSS 276 (300)
Q Consensus 265 ~~~~l~~aGf~~ 276 (300)
+.+++.++|+.+
T Consensus 171 ~~~~l~~~g~~v 182 (258)
T PRK01683 171 YYDALAPAACRV 182 (258)
T ss_pred HHHHHHhCCCce
Confidence 899999999874
No 38
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.77 E-value=3.6e-17 Score=142.71 Aligned_cols=153 Identities=12% Similarity=0.150 Sum_probs=115.0
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
.+..+|||||||+|.++..+++. +..+++++|. +.+++.+++++...++. ++++++.+|+.+.+++ .+|+|++..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~rv~~~~~d~~~~~~~--~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKESYP--EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-ceEEEEecCccCCCCC--CCCEEEeEh
Confidence 45689999999999999999874 6789999997 78999999999888875 5899999999876654 369999999
Q ss_pred cccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCc-hHHHHHHHhhhhhhh-hhcCCcccchHHHHHHHhcCCcEEE
Q 022248 203 VLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDG-TFLKFWQNVVDPLQQ-IVSDGCHLTRQTGNNISEAGFSSVE 278 (300)
Q Consensus 203 ~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGf~~v~ 278 (300)
++|++.+. ..+++++++.|+|||++++.+....... .....+......... .........+++.++|+++||+.++
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 99988654 5789999999999999999987543322 111222222111110 0111234468999999999999887
Q ss_pred Ee
Q 022248 279 LG 280 (300)
Q Consensus 279 ~~ 280 (300)
+.
T Consensus 304 ~~ 305 (306)
T TIGR02716 304 MV 305 (306)
T ss_pred ec
Confidence 53
No 39
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.76 E-value=1.5e-17 Score=139.40 Aligned_cols=156 Identities=20% Similarity=0.174 Sum_probs=112.9
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
..+++|||||||+|+++..++......|+|+|++.....+.+...+-.+.. ..+.++...++.+|. .+.||+|+|..+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~-~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD-PPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC-ccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 478999999999999999998877778999999998877755444434432 234444456678886 689999999999
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF 283 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 283 (300)
|+|..++...|.+++..|+|||.+++-+.....+....-.-...+..+...+ -..+...+..+|+++||+.|++....
T Consensus 192 LYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~--FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 192 LYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVW--FIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred hhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceE--EeCCHHHHHHHHHHcCCceEEEecCc
Confidence 9999999999999999999999999977654332211000000111111111 12366799999999999998886544
No 40
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=3.3e-17 Score=133.38 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=106.5
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....++ ++.+...|+...+++ ++||+|++..++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~~-~~fD~I~~~~~~ 104 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL---PLRTDAYDINAAALN-EDYDFIFSTVVF 104 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC---CceeEeccchhcccc-CCCCEEEEeccc
Confidence 5679999999999999999874 67999999999999999998877765 367777887666654 679999999999
Q ss_pred cCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248 205 CSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 205 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 282 (300)
++++ +...+++++.++|||||++++.+........ .. .......+..++.+++. +|+++.....
T Consensus 105 ~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~-----------~~-~~~~~~~~~~el~~~f~--~~~~~~~~e~ 170 (195)
T TIGR00477 105 MFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYP-----------CH-MPFSFTFKEDELRQYYA--DWELLKYNEA 170 (195)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCC-----------CC-CCcCccCCHHHHHHHhC--CCeEEEeecc
Confidence 9884 4578999999999999998777643322100 00 01123466778888885 5998888744
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.75 E-value=1.5e-16 Score=127.85 Aligned_cols=127 Identities=21% Similarity=0.247 Sum_probs=103.7
Q ss_pred CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
++.+|||+|||+|..+..++. .++.+++++|+++.+++.|+++.+..++. +++++.+|+.+++. +++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~--~i~~~~~d~~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK--NVTVVHGRAEEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC--CEEEEeccHhhCCC-CCCccEEEEcc-
Confidence 478999999999999998876 56789999999999999999999998874 69999999988876 67999999864
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF 283 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 283 (300)
+.+...+++++.++|||||++++...... ..++.++.+..|+.+.+.....
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~~~--------------------------~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKGRDP--------------------------EEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeCCCh--------------------------HHHHHHHHHhcCceEeeeEEEe
Confidence 45678899999999999999999863211 1255566667788866665444
Q ss_pred c
Q 022248 284 L 284 (300)
Q Consensus 284 ~ 284 (300)
+
T Consensus 172 ~ 172 (187)
T PRK00107 172 L 172 (187)
T ss_pred c
Confidence 4
No 42
>PRK06202 hypothetical protein; Provisional
Probab=99.74 E-value=9.5e-17 Score=134.56 Aligned_cols=149 Identities=16% Similarity=0.209 Sum_probs=105.9
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 198 (300)
.++.+|||+|||+|.++..|++. ++.+++|+|+++.|++.|+++.... ++.+...+...++.++++||+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----GVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----CCeEEEEecccccccCCCccEE
Confidence 45679999999999998888741 3469999999999999998875432 4566667777777777899999
Q ss_pred EEcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhh--------hhhhcCCcccchHHHHH
Q 022248 199 VGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL--------QQIVSDGCHLTRQTGNN 268 (300)
Q Consensus 199 ~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 268 (300)
++++++||+++. ..+++++.++++ |.+++.+.......... ......... ........++.+++.++
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l 210 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYAL-FWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL 210 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHH-HHHHHHHhccCceeeccchHHHHhhcCHHHHHHH
Confidence 999999999875 479999999998 66777665554321111 111111100 00111246788999999
Q ss_pred HHhcCCcEEEEee
Q 022248 269 ISEAGFSSVELGN 281 (300)
Q Consensus 269 l~~aGf~~v~~~~ 281 (300)
+++ ||+++....
T Consensus 211 l~~-Gf~~~~~~~ 222 (232)
T PRK06202 211 APQ-GWRVERQWP 222 (232)
T ss_pred hhC-CCeEEeccc
Confidence 999 999765543
No 43
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.74 E-value=3e-16 Score=131.66 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=114.7
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~ 202 (300)
.++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+. ++.++..++...+ ..++.||+|++..
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhhhhcCCCccEEEEhh
Confidence 46789999999999999888864 67899999999999999988776553 5778888877654 3457899999999
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHH-Hhhhhh---hhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ-NVVDPL---QQIVSDGCHLTRQTGNNISEAGFSSVE 278 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~l~~aGf~~v~ 278 (300)
++++.++...+++.+.++|+|||.+++..+...........+. ...... .......+.+.++|.++++++||++++
T Consensus 123 ~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~ 202 (233)
T PRK05134 123 MLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQD 202 (233)
T ss_pred HhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEee
Confidence 9999999999999999999999999988754322111111110 000000 001112355778999999999999988
Q ss_pred Eee
Q 022248 279 LGN 281 (300)
Q Consensus 279 ~~~ 281 (300)
+..
T Consensus 203 ~~~ 205 (233)
T PRK05134 203 ITG 205 (233)
T ss_pred eee
Confidence 764
No 44
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.73 E-value=1.1e-16 Score=138.09 Aligned_cols=138 Identities=20% Similarity=0.233 Sum_probs=107.7
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++++..++ ++.+...|+...++ +++||+|++..++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l---~v~~~~~D~~~~~~-~~~fD~I~~~~vl 194 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL---NIRTGLYDINSASI-QEEYDFILSTVVL 194 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEechhcccc-cCCccEEEEcchh
Confidence 4569999999999999999874 67999999999999999999888775 68888888877665 6789999999999
Q ss_pred cCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248 205 CSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN 281 (300)
Q Consensus 205 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 281 (300)
++++ +...+++++.++|+|||+++++......... ........+...++.+.+. +|+++...+
T Consensus 195 ~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~------------~~~p~~~~~~~~el~~~~~--~~~i~~~~e 259 (287)
T PRK12335 195 MFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP------------CPMPFSFTFKEGELKDYYQ--DWEIVKYNE 259 (287)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC------------CCCCCCcccCHHHHHHHhC--CCEEEEEec
Confidence 9875 5578899999999999998876543322110 0011123466778988885 499988853
No 45
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.72 E-value=3.4e-16 Score=125.54 Aligned_cols=131 Identities=18% Similarity=0.274 Sum_probs=101.1
Q ss_pred CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
++.+|||+|||+|.++..++. .+..+++++|.++.+++.++++++..++. +++++++|+++++ .+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~--~i~~i~~d~~~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN--NVEIVNGRAEDFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC--CeEEEecchhhcc-ccCCccEEEehh-
Confidence 478999999999999988875 34578999999999999999998888763 7999999998875 357999999865
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF 283 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 283 (300)
+.+....++.+.++|+|||++++.. .... ... + .+..+.+...||+.++.....
T Consensus 118 ---~~~~~~~~~~~~~~LkpgG~lvi~~--~~~~--~~~-~------------------~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 118 ---LASLNVLLELTLNLLKVGGYFLAYK--GKKY--LDE-I------------------EEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred ---hhCHHHHHHHHHHhcCCCCEEEEEc--CCCc--HHH-H------------------HHHHHhhhhcCceEeeccccC
Confidence 3456677889999999999999864 1111 000 0 133344445899999988776
Q ss_pred cC
Q 022248 284 LS 285 (300)
Q Consensus 284 ~~ 285 (300)
.+
T Consensus 172 ~~ 173 (181)
T TIGR00138 172 GP 173 (181)
T ss_pred CC
Confidence 65
No 46
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.72 E-value=5.7e-16 Score=129.21 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=116.2
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC-CCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~ 203 (300)
++.+|||+|||+|.++..+++. +..++++|+++.+++.+++++...+.. ++.+...|+.+.+.. .++||+|++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL--KIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 5789999999999999988764 557999999999999999988766542 588888988776544 378999999999
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH-hh-hhh--hhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN-VV-DPL--QQIVSDGCHLTRQTGNNISEAGFSSVEL 279 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 279 (300)
++++.++..+++++.++|+|||.+++................. .. ... .......+.+..++.++++++||+++++
T Consensus 122 l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~ 201 (224)
T TIGR01983 122 LEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV 201 (224)
T ss_pred HHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence 9999999999999999999999999887543221111111110 00 000 0001123456778999999999999988
Q ss_pred eeec
Q 022248 280 GNAF 283 (300)
Q Consensus 280 ~~~~ 283 (300)
+...
T Consensus 202 ~~~~ 205 (224)
T TIGR01983 202 KGLV 205 (224)
T ss_pred eeEE
Confidence 7543
No 47
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.71 E-value=4.7e-16 Score=130.28 Aligned_cols=153 Identities=20% Similarity=0.158 Sum_probs=105.3
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||||||+|.++..+++. +..++|+|+++.+++.|+++....+.. .++.+..+|+. ..+++||+|++..+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~---~~~~~fD~v~~~~~ 136 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLA-GNITFEVGDLE---SLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc-cCcEEEEcCch---hccCCcCEEEEcch
Confidence 35689999999999999999865 457999999999999999998777653 47899998843 34578999999999
Q ss_pred ccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248 204 LCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN 281 (300)
Q Consensus 204 l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 281 (300)
++|+++ ...+++++.+.+++++.+.+.. ..........+...+............+..++.++++++||++++...
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFTFAP--YTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEEECC--ccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 988764 4567888888775444333221 111111111111111111111112345678999999999999988865
Q ss_pred ec
Q 022248 282 AF 283 (300)
Q Consensus 282 ~~ 283 (300)
..
T Consensus 215 ~~ 216 (230)
T PRK07580 215 IS 216 (230)
T ss_pred cc
Confidence 44
No 48
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.71 E-value=8.9e-16 Score=132.85 Aligned_cols=149 Identities=17% Similarity=0.107 Sum_probs=100.9
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL---PLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
++.+|||+|||+|.++..+++. +.+++|+|+|+.|++.++++.+..+. ...++.|...|++.+ ++.||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 5679999999999999999874 67999999999999999999876521 123678888887654 4789999999
Q ss_pred ccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh---hhhhhhhhcCCcccchHHHHHHHhcCCcE
Q 022248 202 LVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV---VDPLQQIVSDGCHLTRQTGNNISEAGFSS 276 (300)
Q Consensus 202 ~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 276 (300)
.+++|+++. ..+++.+.+ +.+||.+ +.. .+. ......+... +..........+++.++++++|+++||++
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~li-Is~-~p~--~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLI-ISF-APK--TLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEE-EEe-CCc--chHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 999888754 345666664 4555554 433 121 1121222211 11101001112447899999999999998
Q ss_pred EEEeee
Q 022248 277 VELGNA 282 (300)
Q Consensus 277 v~~~~~ 282 (300)
+..+..
T Consensus 295 ~~~~~~ 300 (315)
T PLN02585 295 ARREMT 300 (315)
T ss_pred EEEEEe
Confidence 765533
No 49
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.71 E-value=6.8e-16 Score=123.24 Aligned_cols=139 Identities=22% Similarity=0.242 Sum_probs=101.6
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
++.++||+|||.|+.+..|++ .|..|+++|.|+..++.+++.++..++ .++..+.|+....++ +.||+|++..++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~-~G~~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~~Dl~~~~~~-~~yD~I~st~v~ 104 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLAS-QGFDVTAVDISPVALEKLQRLAEEEGL---DIRTRVADLNDFDFP-EEYDFIVSTVVF 104 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHH-TT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T-TTEEEEEEESSG
T ss_pred CCCcEEEcCCCCcHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHhhcCc---eeEEEEecchhcccc-CCcCEEEEEEEe
Confidence 578999999999999999997 577999999999999999999888887 489999999888775 689999998888
Q ss_pred cCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248 205 CSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 205 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 282 (300)
++++ ....+++.+...++|||++++......++-.. + ......+.+.|+...+ +||+++..++.
T Consensus 105 ~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~---------~---~~~~f~~~~~EL~~~y--~dW~il~y~E~ 170 (192)
T PF03848_consen 105 MFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPC---------P---SPFPFLLKPGELREYY--ADWEILKYNED 170 (192)
T ss_dssp GGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS-----------S---S--S--B-TTHHHHHT--TTSEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCC---------C---CCCCcccCHHHHHHHh--CCCeEEEEEcc
Confidence 8874 45678999999999999999977644332100 0 0011233456777777 47998887543
No 50
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.70 E-value=4.9e-16 Score=126.60 Aligned_cols=147 Identities=13% Similarity=0.094 Sum_probs=103.2
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-C-CCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I-PVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~~ 201 (300)
.++.+|||+|||+|.++..+++..+..++|+|+++.+++.+++. +++++.+|+.. + ++++++||+|++.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~---------~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR---------GVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc---------CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 36779999999999999988766667889999999999988642 46788888865 4 4677899999999
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH-hhhh-------hhhhhcCCcccchHHHHHHHhcC
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN-VVDP-------LQQIVSDGCHLTRQTGNNISEAG 273 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~l~~aG 273 (300)
.+++|++++..+++++.|++++ +++..+...........+.. .... .....+..+.+.+++.++++++|
T Consensus 83 ~~l~~~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 83 QTLQATRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred hHhHcCcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence 9999999999999999887654 34432211100000000100 0000 00111224667899999999999
Q ss_pred CcEEEEeee
Q 022248 274 FSSVELGNA 282 (300)
Q Consensus 274 f~~v~~~~~ 282 (300)
|++++....
T Consensus 160 f~v~~~~~~ 168 (194)
T TIGR02081 160 LRILDRAAF 168 (194)
T ss_pred CEEEEEEEe
Confidence 999887654
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.70 E-value=2.7e-16 Score=140.32 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=113.1
Q ss_pred HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191 (300)
Q Consensus 113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 191 (300)
.....+++.+. .++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|+++.. ++ .+++...|...+
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l---~v~~~~~D~~~l--- 225 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL---PVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC---eEEEEECchhhc---
Confidence 33444555544 5678999999999999999987667899999999999999998874 22 477888887665
Q ss_pred CCcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCc-hHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248 192 DASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDG-TFLKFWQNVVDPLQQIVSDGCHLTRQTGNN 268 (300)
Q Consensus 192 ~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (300)
+++||+|++..+++|+. +...+++++.++|||||++++......... ....++.++.. ......+..++.+.
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yif-----p~g~lps~~~i~~~ 300 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIF-----PNGCLPSVRQIAQA 300 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeec-----CCCcCCCHHHHHHH
Confidence 47899999999999985 457899999999999999999875443211 11112211111 11234456677776
Q ss_pred HHhcCCcEEEEeeecc
Q 022248 269 ISEAGFSSVELGNAFL 284 (300)
Q Consensus 269 l~~aGf~~v~~~~~~~ 284 (300)
++ .||++.+++....
T Consensus 301 ~~-~~~~v~d~~~~~~ 315 (383)
T PRK11705 301 SE-GLFVMEDWHNFGA 315 (383)
T ss_pred HH-CCcEEEEEecChh
Confidence 55 6899887765433
No 52
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.69 E-value=5.7e-16 Score=122.46 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=119.0
Q ss_pred HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC
Q 022248 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV 190 (300)
Q Consensus 113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~ 190 (300)
+-..+++..+. ....+|.|+|||+|..+..|++ .+++.++|+|.|++|++.|+++. ++++|..+|+....
T Consensus 17 RPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-------p~~~f~~aDl~~w~- 88 (257)
T COG4106 17 RPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-------PDATFEEADLRTWK- 88 (257)
T ss_pred CcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-------CCCceecccHhhcC-
Confidence 34455666665 4568999999999999999987 58899999999999999998874 69999999998875
Q ss_pred CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh--hhhhh------hcCCcccc
Q 022248 191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD--PLQQI------VSDGCHLT 262 (300)
Q Consensus 191 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~ 262 (300)
++...|+++++.++++++|...+|.++...|.|||+|.+-.+.......+ ..+..... ++... ......+.
T Consensus 89 p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH-~~mr~~A~~~p~~~~l~~~~~~r~~v~s~ 167 (257)
T COG4106 89 PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSH-RLMRETADEAPFAQELGGRGLTRAPLPSP 167 (257)
T ss_pred CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhH-HHHHHHHhcCchhhhhCccccccCCCCCH
Confidence 45789999999999999999999999999999999999976544333222 22222111 11111 12345567
Q ss_pred hHHHHHHHhcCCcEEEEe
Q 022248 263 RQTGNNISEAGFSSVELG 280 (300)
Q Consensus 263 ~~~~~~l~~aGf~~v~~~ 280 (300)
..+.++|...+-+ |.+.
T Consensus 168 a~Yy~lLa~~~~r-vDiW 184 (257)
T COG4106 168 AAYYELLAPLACR-VDIW 184 (257)
T ss_pred HHHHHHhCcccce-eeee
Confidence 7888888887665 4443
No 53
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.69 E-value=4.7e-16 Score=122.50 Aligned_cols=133 Identities=22% Similarity=0.216 Sum_probs=98.7
Q ss_pred EEEcCCHHHHHHHHHHHHHcCC-CCCCEEEEecccCcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEE
Q 022248 152 LGVDPNRKMEKYAQTAAVAAGL-PLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 152 ~giD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 230 (300)
+|+|+|+.|++.|+++.+.... ...+++|+++|++++|+++++||+|++.+++++++|+..++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 4899999999999877653221 014799999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCchHHHHHHHhh-----hhhh------hhh------cCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248 231 EHVAAKDGTFLKFWQNVV-----DPLQ------QIV------SDGCHLTRQTGNNISEAGFSSVELGNAFLS 285 (300)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~-----~~~~------~~~------~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 285 (300)
++..... .......... .+.. ..+ ...+.+.+++.++|+++||+.+......+.
T Consensus 81 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 81 DFNKSNQ-SVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred ECCCCCh-HHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 9875433 2221111100 0000 000 023567889999999999999877655443
No 54
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.68 E-value=1.4e-17 Score=120.61 Aligned_cols=96 Identities=33% Similarity=0.452 Sum_probs=65.0
Q ss_pred EEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEcccccC
Q 022248 130 LEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLVLCS 206 (300)
Q Consensus 130 LDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l~~ 206 (300)
||||||+|.++..+++. +..+++|+|+|+.|++.+++++...... +......+..+.. ...++||+|++..+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND--NFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc--ceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999874 6789999999999999999988876532 3344443333321 12269999999999999
Q ss_pred cccHHHHHHHHHHcccCCcEE
Q 022248 207 VKDVDMTLQEVRRVLKPGGIY 227 (300)
Q Consensus 207 ~~~~~~~l~~~~~~LkpgG~l 227 (300)
++++..++++++++|||||+|
T Consensus 79 l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999986
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.68 E-value=6.4e-17 Score=117.62 Aligned_cols=94 Identities=32% Similarity=0.537 Sum_probs=79.1
Q ss_pred EEEECCCCChhHHHhHhCC----CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc-cc
Q 022248 129 VLEIGIGTGPNLKYYAADT----DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT-LV 203 (300)
Q Consensus 129 vLDiGcG~G~~~~~l~~~~----~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~ 203 (300)
|||+|||+|..+..+.+.. ..+++|+|+|+.+++.+++.....+. +++|+++|+.++++.+++||+|++. .+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999998742 37999999999999999999887664 7899999999998888899999995 44
Q ss_pred ccCccc--HHHHHHHHHHcccCCc
Q 022248 204 LCSVKD--VDMTLQEVRRVLKPGG 225 (300)
Q Consensus 204 l~~~~~--~~~~l~~~~~~LkpgG 225 (300)
++|+.+ ...+++++.++|+|||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 888864 4688999999999998
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.67 E-value=4.1e-15 Score=119.59 Aligned_cols=130 Identities=22% Similarity=0.199 Sum_probs=103.3
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
++.+|||+|||+|.++..++.... +++++|+++.+++.+++++...+. +++++.+|+.+.. .++||+|+++...
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~--~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV---GLDVVMTDLFKGV--RGKFDVILFNPPY 92 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC---ceEEEEccccccc--CCcccEEEECCCC
Confidence 567899999999999999987544 999999999999999999887664 5888989986653 3589999998766
Q ss_pred cCccc---------------------HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccch
Q 022248 205 CSVKD---------------------VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTR 263 (300)
Q Consensus 205 ~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (300)
++.++ ...+++++.++|||||.++++...... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~-------------------------~~ 147 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG-------------------------EP 147 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC-------------------------hH
Confidence 54432 346799999999999999998743221 23
Q ss_pred HHHHHHHhcCCcEEEEeeeccC
Q 022248 264 QTGNNISEAGFSSVELGNAFLS 285 (300)
Q Consensus 264 ~~~~~l~~aGf~~v~~~~~~~~ 285 (300)
++.+.|++.||+...+.+....
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecC
Confidence 7788899999998877765443
No 57
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.67 E-value=9.2e-15 Score=118.43 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=99.9
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
.++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...++. +++++.+|+.. ++ .+.||+|++..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~--~i~~~~~d~~~-~~-~~~~D~v~~~~ 105 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG--NIDIIPGEAPI-EL-PGKADAIFIGG 105 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CeEEEecCchh-hc-CcCCCEEEECC
Confidence 46789999999999999998873 4579999999999999999998877763 78999888742 33 36799999976
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 282 (300)
... ....++..+.++|+|||++++...... ...++.+++++.||+.+++...
T Consensus 106 ~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~~-------------------------~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 106 SGG---NLTAIIDWSLAHLHPGGRLVLTFILLE-------------------------NLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred Ccc---CHHHHHHHHHHhcCCCeEEEEEEecHh-------------------------hHHHHHHHHHHCCCCcceEEEE
Confidence 544 346678999999999999988552111 0136778899999987776543
Q ss_pred cc
Q 022248 283 FL 284 (300)
Q Consensus 283 ~~ 284 (300)
..
T Consensus 158 ~~ 159 (187)
T PRK08287 158 QV 159 (187)
T ss_pred EE
Confidence 33
No 58
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.66 E-value=4.1e-15 Score=121.61 Aligned_cols=108 Identities=22% Similarity=0.245 Sum_probs=87.4
Q ss_pred HHHHHHhhcCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (300)
Q Consensus 115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 193 (300)
+.+.+..+ .++.+|||||||+|.++..+++. ++.+++|+|+|+.+++.|+++. +++.+..+|+.. +++++
T Consensus 34 ~~~~l~~~-~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~ 104 (204)
T TIGR03587 34 FARALNRL-PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDN 104 (204)
T ss_pred HHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCC
Confidence 33344443 36678999999999999999874 5689999999999999998763 356788889887 88889
Q ss_pred cccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecc
Q 022248 194 SVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
+||+|++..+++|++ +...+++++.+++ ++++++.+..
T Consensus 105 sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 105 FFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred CEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 999999999999985 3467889999987 5688887753
No 59
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.66 E-value=8e-16 Score=125.92 Aligned_cols=111 Identities=27% Similarity=0.280 Sum_probs=91.1
Q ss_pred HHhhcCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcCC--CCCCc
Q 022248 119 FDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIP--VSDAS 194 (300)
Q Consensus 119 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~ 194 (300)
...+..++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...++ +++.++++|+ +.++ +++++
T Consensus 34 ~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~--~~v~~~~~d~~~~l~~~~~~~~ 111 (202)
T PRK00121 34 AELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL--TNLRLLCGDAVEVLLDMFPDGS 111 (202)
T ss_pred HHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC--CCEEEEecCHHHHHHHHcCccc
Confidence 3333446789999999999999999864 567899999999999999999888776 4799999999 7666 67789
Q ss_pred ccEEEEcccccCcc--------cHHHHHHHHHHcccCCcEEEEEe
Q 022248 195 VDAVVGTLVLCSVK--------DVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 195 ~D~v~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
||+|++.+...+.. ....+++++.++|||||++++..
T Consensus 112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 99999876543322 13678999999999999999976
No 60
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.66 E-value=2.3e-15 Score=118.56 Aligned_cols=148 Identities=19% Similarity=0.150 Sum_probs=110.2
Q ss_pred cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-C-CCCCCcccEEEE
Q 022248 123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I-PVSDASVDAVVG 200 (300)
Q Consensus 123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~ 200 (300)
..++.+|||+|||.|.++..|.+..+.+.+|+|++++.+..+.++ -+.++++|+++ + .|++++||.||+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r---------Gv~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR---------GVSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc---------CCCEEECCHHHhHhhCCCCCccEEeh
Confidence 357899999999999999999887889999999999998887765 46789999976 3 489999999999
Q ss_pred cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhh-------h-hhhc---CCcccchHHHHHH
Q 022248 201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL-------Q-QIVS---DGCHLTRQTGNNI 269 (300)
Q Consensus 201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~---~~~~~~~~~~~~l 269 (300)
+.+++++.+++.+|+|+.|+ |...+++-++. +.+...++-.+... . .++. -...+..+++++.
T Consensus 82 sqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNF---g~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc 155 (193)
T PF07021_consen 82 SQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNF---GHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC 155 (193)
T ss_pred HhHHHhHhHHHHHHHHHHHh---cCeEEEEecCh---HHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence 99999999999999999776 44666655432 22222232221110 0 0111 1245678999999
Q ss_pred HhcCCcEEEEeeeccC
Q 022248 270 SEAGFSSVELGNAFLS 285 (300)
Q Consensus 270 ~~aGf~~v~~~~~~~~ 285 (300)
++.|+++++-......
T Consensus 156 ~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 156 RELGIRIEERVFLDGG 171 (193)
T ss_pred HHCCCEEEEEEEEcCC
Confidence 9999998877654443
No 61
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.66 E-value=7.5e-16 Score=142.46 Aligned_cols=145 Identities=23% Similarity=0.233 Sum_probs=109.9
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC--cCCCCCCcccEEEEcc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--AIPVSDASVDAVVGTL 202 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~~~ 202 (300)
++.+|||||||+|.++..+++. ..+++|+|+++.+++.+++... . .+++.++++|+. .+++++++||+|++.+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~---~-~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~ 111 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING---H-YKNVKFMCADVTSPDLNISDGSVDLIFSNW 111 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc---c-CCceEEEEecccccccCCCCCCEEEEehhh
Confidence 5679999999999999999875 5599999999999988765321 1 247899999986 4677888999999999
Q ss_pred cccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248 203 VLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG 280 (300)
Q Consensus 203 ~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 280 (300)
+++++++ ...+++++.++|||||++++.+......+.... ......+.....|.+++.++||..+...
T Consensus 112 ~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 112 LLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR----------KNNPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred hHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc----------cCCCCeecChHHHHHHHHHheeccCCCC
Confidence 9999976 468999999999999999998865432211110 0001123346699999999999976655
Q ss_pred eecc
Q 022248 281 NAFL 284 (300)
Q Consensus 281 ~~~~ 284 (300)
...+
T Consensus 182 ~~~~ 185 (475)
T PLN02336 182 SFEL 185 (475)
T ss_pred EEEE
Confidence 4444
No 62
>PRK06922 hypothetical protein; Provisional
Probab=99.65 E-value=3.1e-15 Score=138.02 Aligned_cols=106 Identities=21% Similarity=0.393 Sum_probs=91.0
Q ss_pred CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT 201 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~ 201 (300)
++.+|||+|||+|.++..+++ .++.+++|+|+|+.|++.|+++....+ .++.++++|+.+++ +++++||+|+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 578999999999999888876 467899999999999999998875544 36888999998887 788999999999
Q ss_pred ccccCc-------------ccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 202 LVLCSV-------------KDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 202 ~~l~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
.++|++ .+...+++++.++|||||.+++.+..
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 888865 24578899999999999999998753
No 63
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.64 E-value=7.7e-15 Score=112.92 Aligned_cols=129 Identities=22% Similarity=0.316 Sum_probs=103.9
Q ss_pred CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
...+|||+|||+|.++..|++. ....++|+|+|+.+++.|+..++..+++ ..|+|.+.|+.+..+..+.||+|+--..
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-NEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-cceeEEEeeccCCcccccceeEEeecCc
Confidence 3459999999999999999974 3345999999999999999999988885 4599999999888888899999997655
Q ss_pred ccCc---c-----cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCc
Q 022248 204 LCSV---K-----DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFS 275 (300)
Q Consensus 204 l~~~---~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 275 (300)
+..+ + .+..++..+.+.|+|||+++|...+ ++.+|+.+.++..||+
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN--------------------------~T~dELv~~f~~~~f~ 199 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN--------------------------FTKDELVEEFENFNFE 199 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC--------------------------ccHHHHHHHHhcCCeE
Confidence 5544 1 1245688899999999999997643 3345888889899988
Q ss_pred EEEEe
Q 022248 276 SVELG 280 (300)
Q Consensus 276 ~v~~~ 280 (300)
.....
T Consensus 200 ~~~tv 204 (227)
T KOG1271|consen 200 YLSTV 204 (227)
T ss_pred EEEee
Confidence 76554
No 64
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.64 E-value=7e-16 Score=122.93 Aligned_cols=171 Identities=19% Similarity=0.283 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhcC-CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C
Q 022248 112 AGYKSQLFDNLRG-KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P 189 (300)
Q Consensus 112 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~ 189 (300)
...+.+++..... +-.++||+|||||..+..|.. ....++|+|+|.+|+++|.++--.. ...++++... +
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~-~a~~ltGvDiS~nMl~kA~eKg~YD-------~L~~Aea~~Fl~ 182 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRD-MADRLTGVDISENMLAKAHEKGLYD-------TLYVAEAVLFLE 182 (287)
T ss_pred HHHHHHHHHhccCCccceeeecccCcCcccHhHHH-HHhhccCCchhHHHHHHHHhccchH-------HHHHHHHHHHhh
Confidence 3455566665552 368999999999999988864 3458999999999999998762111 1233333221 1
Q ss_pred -CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248 190 -VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN 268 (300)
Q Consensus 190 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (300)
..++.||+|+...++.++-+.+.++--....|+|||.|.|+.-....++.+ . +.+.+ ..-|+...++.+
T Consensus 183 ~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f--~----l~ps~----RyAH~~~YVr~~ 252 (287)
T COG4976 183 DLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGF--V----LGPSQ----RYAHSESYVRAL 252 (287)
T ss_pred hccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCe--e----cchhh----hhccchHHHHHH
Confidence 356889999999999999999999999999999999999987555443221 0 11111 124566789999
Q ss_pred HHhcCCcEEEEeeeccCC-cccccceeeEEecC
Q 022248 269 ISEAGFSSVELGNAFLSN-ASLISPHVYGIAHK 300 (300)
Q Consensus 269 l~~aGf~~v~~~~~~~~~-~~~~~~~~~~~~~k 300 (300)
++..||++|+++...+.. .--..|-.+.+++|
T Consensus 253 l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark 285 (287)
T COG4976 253 LAASGLEVIAIEDTTIRRDAGEPVPGILVIARK 285 (287)
T ss_pred HHhcCceEEEeecccchhhcCCCCCCceEEEec
Confidence 999999999999876653 33345556666654
No 65
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.63 E-value=6.1e-15 Score=121.14 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=108.9
Q ss_pred HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC----------CCCCCEEEEe
Q 022248 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG----------LPLTNFKFLQ 182 (300)
Q Consensus 114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~----------~~~~~~~~~~ 182 (300)
.+..++..+. .++.+|||+|||.|..+..|++ .+.+|+|+|+|+.+++.+.+...... ....++++++
T Consensus 22 ~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~-~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (213)
T TIGR03840 22 LLVKHWPALGLPAGARVFVPLCGKSLDLAWLAE-QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC 100 (213)
T ss_pred HHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence 3444444432 3667999999999999999996 57899999999999998644221000 0123689999
Q ss_pred cccCcCCCC-CCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCc
Q 022248 183 AVGEAIPVS-DASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGC 259 (300)
Q Consensus 183 ~d~~~~~~~-~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (300)
+|+.+++.. .+.||+|+...++++++. ....++.+.++|||||++++.......... .. ....
T Consensus 101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~------------~g--pp~~ 166 (213)
T TIGR03840 101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM------------AG--PPFS 166 (213)
T ss_pred ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC------------CC--cCCC
Confidence 999887642 467999999888888853 356899999999999998887654322110 00 0124
Q ss_pred ccchHHHHHHHhcCCcEEEEeeeccC
Q 022248 260 HLTRQTGNNISEAGFSSVELGNAFLS 285 (300)
Q Consensus 260 ~~~~~~~~~l~~aGf~~v~~~~~~~~ 285 (300)
.+.+++.++|. .+|+++.++...+.
T Consensus 167 ~~~~eL~~~f~-~~~~i~~~~~~~~~ 191 (213)
T TIGR03840 167 VSPAEVEALYG-GHYEIELLESRDVL 191 (213)
T ss_pred CCHHHHHHHhc-CCceEEEEeecccc
Confidence 56678888775 46887777765544
No 66
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.62 E-value=4e-15 Score=117.38 Aligned_cols=102 Identities=22% Similarity=0.301 Sum_probs=81.6
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
.-.++||+|||.|.++..|+... ..++++|+++.+++.|++++... ++|+|++.++... .+++.||+|+++.++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~-~P~~~FDLIV~SEVl 116 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL----PHVEWIQADVPEF-WPEGRFDLIVLSEVL 116 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEEES-G
T ss_pred ccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCC-CCCCCeeEEEEehHh
Confidence 34789999999999999999765 48999999999999999998643 5899999998665 467999999999999
Q ss_pred cCccc---HHHHHHHHHHcccCCcEEEEEec
Q 022248 205 CSVKD---VDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 205 ~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+++.+ ...++..+...|+|||.|++..+
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99965 45689999999999999999774
No 67
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.62 E-value=1.8e-15 Score=121.79 Aligned_cols=151 Identities=18% Similarity=0.236 Sum_probs=107.9
Q ss_pred CeEEEECCCCChhHHHhHh-C--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC----cCCCCCCcccEEE
Q 022248 127 KKVLEIGIGTGPNLKYYAA-D--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE----AIPVSDASVDAVV 199 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~-~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~D~v~ 199 (300)
.+|||||||.|.....+++ . ....++++|.|+.+++..++...... .++.-.+.|+. ..+...+++|+|+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceeccchhccCCCCcCccceEE
Confidence 4899999999999999987 2 34789999999999999988754432 34444444443 2356779999999
Q ss_pred EcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcC----CcccchHHHHHHHhcC
Q 022248 200 GTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSD----GCHLTRQTGNNISEAG 273 (300)
Q Consensus 200 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~aG 273 (300)
+.++|..++ ....++++++++|||||.+++-+....+-......-.+.+.....+-++ .+++.+++.+++.++|
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcc
Confidence 999999874 4578899999999999999999876643211111001111111111112 3568899999999999
Q ss_pred CcEEEEe
Q 022248 274 FSSVELG 280 (300)
Q Consensus 274 f~~v~~~ 280 (300)
|..++..
T Consensus 230 f~~~~~~ 236 (264)
T KOG2361|consen 230 FEEVQLE 236 (264)
T ss_pred cchhccc
Confidence 9987765
No 68
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.62 E-value=1.1e-14 Score=119.41 Aligned_cols=101 Identities=22% Similarity=0.274 Sum_probs=84.7
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||+|||+|..+..+++. ...+++++|+++.+++.|++++...++. .+++++.+|+.+.....++||+|++.
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-GVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEECCcccCCccCCCccEEEEc
Confidence 46789999999999999888763 2469999999999999999999887764 36899999987754456799999999
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.++.+++ +++.++|+|||+|++..
T Consensus 150 ~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhh------HHHHHhcCcCcEEEEEE
Confidence 8887664 57889999999998854
No 69
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.61 E-value=2.5e-14 Score=107.78 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=84.8
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~ 201 (300)
.++.+|||+|||+|.++..+++. +..+++++|+++.+++.++++++..++. +++++.+|+.. ++...+.||.|++.
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS--NIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC--ceEEEeccccccChhhcCCCCEEEEC
Confidence 35679999999999999999874 4579999999999999999998877653 78888888764 33334689999997
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.... ....+++++.+.|||||.+++..
T Consensus 96 ~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Ccch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 6543 34578999999999999999864
No 70
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.61 E-value=4.9e-14 Score=119.57 Aligned_cols=139 Identities=24% Similarity=0.332 Sum_probs=104.7
Q ss_pred HHHHHhhcCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (300)
Q Consensus 116 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 194 (300)
..+++.+...+.+|||+|||+|.++..++.. +..+++|+|+++.+++.+++++...++. ++.++.+|+.. ++++++
T Consensus 78 ~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~d~~~-~~~~~~ 154 (251)
T TIGR03534 78 EAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD--NVTFLQSDWFE-PLPGGK 154 (251)
T ss_pred HHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhc-cCcCCc
Confidence 3344444445579999999999999999874 5679999999999999999999888764 79999999866 455789
Q ss_pred ccEEEEcccccC------c--------------------ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh
Q 022248 195 VDAVVGTLVLCS------V--------------------KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV 248 (300)
Q Consensus 195 ~D~v~~~~~l~~------~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 248 (300)
||+|+++--... + .....+++++.++|+|||.+++....
T Consensus 155 fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~--------------- 219 (251)
T TIGR03534 155 FDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY--------------- 219 (251)
T ss_pred eeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---------------
Confidence 999998532111 1 11236789999999999999885410
Q ss_pred hhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248 249 DPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF 283 (300)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 283 (300)
...+++.++|+++||+.+++....
T Consensus 220 -----------~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 220 -----------DQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred -----------cHHHHHHHHHHhCCCCceEEEeCC
Confidence 012377888999999988876543
No 71
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.61 E-value=2.5e-14 Score=123.45 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=87.1
Q ss_pred HHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (300)
Q Consensus 116 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 195 (300)
.++++.+..++.+|||+|||+|.++..+++....+++++|+++.+++.|++++...++. .++.+...+.. +..+++|
T Consensus 150 l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~-~~~~~~~~~~~--~~~~~~f 226 (288)
T TIGR00406 150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS-DRLQVKLIYLE--QPIEGKA 226 (288)
T ss_pred HHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-cceEEEecccc--cccCCCc
Confidence 34444445577999999999999998887755568999999999999999999888764 45666666532 2345789
Q ss_pred cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+|+++.... ....++.++.++|||||+++++..
T Consensus 227 DlVvan~~~~---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 227 DVIVANILAE---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred eEEEEecCHH---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999976432 345788999999999999999874
No 72
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.61 E-value=5.5e-15 Score=125.67 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=84.5
Q ss_pred CCCeEEEECCCCCh----hHHHhHhC------CCceEEEEcCCHHHHHHHHHHHHH----cCCC----------------
Q 022248 125 KAKKVLEIGIGTGP----NLKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVA----AGLP---------------- 174 (300)
Q Consensus 125 ~~~~vLDiGcG~G~----~~~~l~~~------~~~~~~giD~s~~~~~~a~~~~~~----~~~~---------------- 174 (300)
++.+|||+|||+|. ++..+++. .+.+++|+|+|+.|++.|++.+-. .+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 34444432 246899999999999999985310 0110
Q ss_pred -----CCCEEEEecccCcCCCCCCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEe
Q 022248 175 -----LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 175 -----~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
..++.|.+.|+.+.+++.+.||+|+|.++++|+++ ...++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 13689999999988877889999999999999964 4579999999999999999854
No 73
>PLN03075 nicotianamine synthase; Provisional
Probab=99.61 E-value=2.8e-14 Score=121.19 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=88.4
Q ss_pred CCCCeEEEECCCCChhHHHh-Hh--CCCceEEEEcCCHHHHHHHHHHHHH-cCCCCCCEEEEecccCcCCCCCCcccEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYY-AA--DTDVQVLGVDPNRKMEKYAQTAAVA-AGLPLTNFKFLQAVGEAIPVSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l-~~--~~~~~~~giD~s~~~~~~a~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 199 (300)
.++.+|+|||||.|.++..+ ++ .++.+++|+|+++.+++.|++.+.. .++. ++++|..+|+.+..-..+.||+|+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-KRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-CCcEEEECchhhcccccCCcCEEE
Confidence 36789999999988554433 32 4677999999999999999999965 6665 589999999987643357899999
Q ss_pred EcccccCc--ccHHHHHHHHHHcccCCcEEEEEe
Q 022248 200 GTLVLCSV--KDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 200 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+. +++++ +++.++++++++.|+|||.+++-.
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 88888 688999999999999999999965
No 74
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.61 E-value=3.4e-14 Score=120.23 Aligned_cols=123 Identities=24% Similarity=0.264 Sum_probs=93.6
Q ss_pred cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
..++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++++..++. .++.+..++ .+||+|+++.
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~~~~--------~~fD~Vvani 187 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-LNVYLPQGD--------LKADVIVANI 187 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEccCC--------CCcCEEEEcC
Confidence 4578899999999999998877654446999999999999999999887763 244443332 2799999864
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 282 (300)
.. .....++.++.++|||||++++.+.... ..+++.+.+++.||+++.....
T Consensus 188 ~~---~~~~~l~~~~~~~LkpgG~lilsgi~~~-------------------------~~~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 188 LA---NPLLELAPDLARLLKPGGRLILSGILEE-------------------------QADEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred cH---HHHHHHHHHHHHhcCCCcEEEEEECcHh-------------------------hHHHHHHHHHHCCCEEEEEEEe
Confidence 32 2345678999999999999999864221 1237788899999998877654
No 75
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.60 E-value=7.8e-15 Score=119.38 Aligned_cols=106 Identities=29% Similarity=0.304 Sum_probs=88.2
Q ss_pred CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEEEE
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVG 200 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~ 200 (300)
...+|||||||+|.++..+++ .+...++|+|+++.+++.|++++...++. ++.++.+|+..++ ++++.+|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~--ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK--NLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC--CEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 567999999999999999987 46789999999999999999999888774 8999999997653 45678999998
Q ss_pred cccccCcccH--------HHHHHHHHHcccCCcEEEEEec
Q 022248 201 TLVLCSVKDV--------DMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 201 ~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.+...+.... ..+++++.++|||||.|++...
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 7654433221 4689999999999999999773
No 76
>PRK04266 fibrillarin; Provisional
Probab=99.60 E-value=4.6e-14 Score=116.85 Aligned_cols=135 Identities=20% Similarity=0.233 Sum_probs=93.9
Q ss_pred CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v 198 (300)
.++.+|||+|||+|.++..+++.. ...|+++|+++.|++.+.++++.. .++.++.+|+... ++. +.||+|
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~-~~~D~i 145 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVV-EKVDVI 145 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhcc-ccCCEE
Confidence 577899999999999999998743 468999999999999887776543 4788999998642 223 569999
Q ss_pred EEcccccCccc-HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEE
Q 022248 199 VGTLVLCSVKD-VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSV 277 (300)
Q Consensus 199 ~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 277 (300)
++.... ++ ...+++++.++|||||.+++.-.....+... .. . .. .++..+.++++||+.+
T Consensus 146 ~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~--------~~-~------~~-~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 146 YQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK--------DP-K------EI-FKEEIRKLEEGGFEIL 206 (226)
T ss_pred EECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC--------CH-H------HH-HHHHHHHHHHcCCeEE
Confidence 964321 11 2346899999999999999942211000000 00 0 00 1245599999999998
Q ss_pred EEeee
Q 022248 278 ELGNA 282 (300)
Q Consensus 278 ~~~~~ 282 (300)
+....
T Consensus 207 ~~~~l 211 (226)
T PRK04266 207 EVVDL 211 (226)
T ss_pred EEEcC
Confidence 77754
No 77
>PRK14968 putative methyltransferase; Provisional
Probab=99.60 E-value=7.8e-14 Score=113.03 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=102.4
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||+|||+|.++..++.. +.+++++|+++.+++.+++++...++....+.++.+|+.+. +.++.||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCC
Confidence 36779999999999999999876 78999999999999999999988776422288888887653 44558999998654
Q ss_pred ccC---------------------cccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccc
Q 022248 204 LCS---------------------VKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLT 262 (300)
Q Consensus 204 l~~---------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (300)
... ......+++++.++|||||.+++..... ...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~-------------------------~~~ 154 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL-------------------------TGE 154 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-------------------------CCH
Confidence 322 1113567999999999999998865211 112
Q ss_pred hHHHHHHHhcCCcEEEEeeeccC
Q 022248 263 RQTGNNISEAGFSSVELGNAFLS 285 (300)
Q Consensus 263 ~~~~~~l~~aGf~~v~~~~~~~~ 285 (300)
+++.+++.++||+++.+....+.
T Consensus 155 ~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 155 DEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred HHHHHHHHHCCCeeeeeeecccC
Confidence 36788999999998777654444
No 78
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.60 E-value=1.1e-13 Score=113.13 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=85.5
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVG 200 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~ 200 (300)
.++.+|||+|||+|.++..++.. ...+++++|+++.+++.++++++..++. +++.++.+|+.+. +...+.||+|++
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-NNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CCeEEEEechhhhHhhcCCCCCEEEE
Confidence 57789999999999999988763 4568999999999999999999888753 5889999998663 333468999998
Q ss_pred cccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.. ...+...+++++.+.|||||++++..
T Consensus 118 ~~---~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 118 GG---GSEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CC---CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence 54 23466788999999999999998744
No 79
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.60 E-value=3.5e-14 Score=117.11 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=107.5
Q ss_pred HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-------------CCCCE
Q 022248 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-------------PLTNF 178 (300)
Q Consensus 113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~-------------~~~~~ 178 (300)
..+.+.+..+. .++.+|||+|||.|..+..|++ .+.+|+|||+|+.+++.+.+. .++ ...++
T Consensus 24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v 99 (218)
T PRK13255 24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAE-QGHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEI 99 (218)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHh-CCCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCce
Confidence 34444444332 3568999999999999999996 577999999999999987432 221 12478
Q ss_pred EEEecccCcCCCC-CCcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhh
Q 022248 179 KFLQAVGEAIPVS-DASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIV 255 (300)
Q Consensus 179 ~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (300)
++.++|+.+++.. .+.||+|+...++++++ ....+++.+.++|+|||+++++.....+... ..
T Consensus 100 ~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~------------~g-- 165 (218)
T PRK13255 100 TIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL------------AG-- 165 (218)
T ss_pred EEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC------------CC--
Confidence 9999999887533 25899999988888885 3467899999999999986665543322110 00
Q ss_pred cCCcccchHHHHHHHhcCCcEEEEeeecc
Q 022248 256 SDGCHLTRQTGNNISEAGFSSVELGNAFL 284 (300)
Q Consensus 256 ~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 284 (300)
.....+.+++.+++. -+|+++.++....
T Consensus 166 Pp~~~~~~el~~~~~-~~~~i~~~~~~~~ 193 (218)
T PRK13255 166 PPFSVSDEEVEALYA-GCFEIELLERQDV 193 (218)
T ss_pred CCCCCCHHHHHHHhc-CCceEEEeeeccc
Confidence 012456778988884 3378777765443
No 80
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.59 E-value=3.5e-14 Score=117.08 Aligned_cols=100 Identities=22% Similarity=0.237 Sum_probs=84.3
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||||||+|+++..+++. ...+++++|+++.+++.++++++..++ .++.++.+|+.....+.+.||+|++.
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~--~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY--DNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCeEEEECCcccCCCcCCCcCEEEEC
Confidence 47789999999999999888764 346999999999999999999988876 48999999987765566899999998
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.....++ ..+.+.|||||++++..
T Consensus 153 ~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcccch------HHHHHhhCCCcEEEEEE
Confidence 7765543 56778999999998854
No 81
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.57 E-value=6.7e-14 Score=115.84 Aligned_cols=100 Identities=24% Similarity=0.212 Sum_probs=83.5
Q ss_pred CCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||||||+|.++..+++.. ..+++++|+++.+++.|+++++..++ ++++++.+|+.......+.||+|++.
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~--~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL--DNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCeEEEECCcccCCcccCCCCEEEEc
Confidence 567899999999999999888743 35799999999999999999998886 48999999987654445789999988
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
....++ ...+.+.|+|||++++..
T Consensus 154 ~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccc------cHHHHHhcCcCcEEEEEE
Confidence 766554 356888999999999854
No 82
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.57 E-value=5.6e-14 Score=123.64 Aligned_cols=131 Identities=21% Similarity=0.217 Sum_probs=104.9
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||+|||+|.++..++. .+..++|+|+++.|++.++++++..++. ++.+..+|+.++++.++.||+|+++--
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~--~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIE--DFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCC--CCeEEecchhcCCcccCCCCEEEECCC
Confidence 4678999999999999887664 5779999999999999999999988875 588999999999988889999999521
Q ss_pred c------c--Cccc-HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCC
Q 022248 204 L------C--SVKD-VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGF 274 (300)
Q Consensus 204 l------~--~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 274 (300)
. . ...+ ...+++++.++|||||++++..+.. .++.+.++++||
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~----------------------------~~~~~~~~~~g~ 309 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR----------------------------IDLESLAEDAFR 309 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC----------------------------CCHHHHHhhcCc
Confidence 1 1 1112 4678999999999999999876322 156677889999
Q ss_pred cEEEEeeeccCC
Q 022248 275 SSVELGNAFLSN 286 (300)
Q Consensus 275 ~~v~~~~~~~~~ 286 (300)
++......++.
T Consensus 310 -i~~~~~~~~h~ 320 (329)
T TIGR01177 310 -VVKRFEVRVHR 320 (329)
T ss_pred -chheeeeeeec
Confidence 87777666654
No 83
>PRK14967 putative methyltransferase; Provisional
Probab=99.57 E-value=2.5e-13 Score=113.11 Aligned_cols=106 Identities=25% Similarity=0.289 Sum_probs=82.8
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||+|||+|.++..++.....+++++|+++.+++.+++++...++ ++.++.+|+... ++++.||+|+++--
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~-~~~~~fD~Vi~npP 110 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV---DVDVRRGDWARA-VEFRPFDVVVSNPP 110 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC---eeEEEECchhhh-ccCCCeeEEEECCC
Confidence 45689999999999999988875445999999999999999999887764 578888888653 45678999999632
Q ss_pred ccCc---------------------ccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 204 LCSV---------------------KDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 204 l~~~---------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
.... .....+++++.++|||||+++++...
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 1111 01355788999999999999987543
No 84
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.56 E-value=3.8e-13 Score=116.78 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=84.8
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCC
Q 022248 114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPV 190 (300)
Q Consensus 114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~ 190 (300)
....+...+ +++.+|||+|||+|..+..|++.. +.+|+++|+|+.|++.+++++.... +..++.++++|+.+ +++
T Consensus 53 ~~~~ia~~~-~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 53 HADEIAAAT-GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFTQPLAL 130 (301)
T ss_pred HHHHHHHhh-CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEcccchhhh
Confidence 333444444 356799999999999999998753 5799999999999999999876543 11357788999876 343
Q ss_pred CCC----cccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEe
Q 022248 191 SDA----SVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 191 ~~~----~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
... ...++++...+++++ +...++++++++|+|||.+++..
T Consensus 131 ~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 131 PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 322 233444556677765 34578999999999999999844
No 85
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=5.6e-14 Score=118.91 Aligned_cols=138 Identities=22% Similarity=0.332 Sum_probs=103.1
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248 114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (300)
Q Consensus 114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 193 (300)
+-.++++.+..++.+|||+|||+|.++.+.++....+++|+|+++.+++.|+.+++.+++.. .+.....+....+ ..+
T Consensus 151 lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-~~~~~~~~~~~~~-~~~ 228 (300)
T COG2264 151 LCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-LVQAKGFLLLEVP-ENG 228 (300)
T ss_pred HHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-hhhcccccchhhc-ccC
Confidence 34455556666899999999999999999987666679999999999999999999988752 2222222222222 236
Q ss_pred cccEEEEcccccCccc-HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248 194 SVDAVVGTLVLCSVKD-VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA 272 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 272 (300)
.||+|+++= +.+ ...+...+.+.|||||+++++...... .+.+.+.+.++
T Consensus 229 ~~DvIVANI----LA~vl~~La~~~~~~lkpgg~lIlSGIl~~q-------------------------~~~V~~a~~~~ 279 (300)
T COG2264 229 PFDVIVANI----LAEVLVELAPDIKRLLKPGGRLILSGILEDQ-------------------------AESVAEAYEQA 279 (300)
T ss_pred cccEEEehh----hHHHHHHHHHHHHHHcCCCceEEEEeehHhH-------------------------HHHHHHHHHhC
Confidence 999999864 223 246789999999999999998832210 13778889999
Q ss_pred CCcEEEEeee
Q 022248 273 GFSSVELGNA 282 (300)
Q Consensus 273 Gf~~v~~~~~ 282 (300)
||+++++...
T Consensus 280 gf~v~~~~~~ 289 (300)
T COG2264 280 GFEVVEVLER 289 (300)
T ss_pred CCeEeEEEec
Confidence 9999888755
No 86
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.55 E-value=3.7e-13 Score=118.46 Aligned_cols=150 Identities=19% Similarity=0.258 Sum_probs=107.6
Q ss_pred CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEEc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGT 201 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~ 201 (300)
.+..+||||||+|.++..+++ .+...++|+|+++.+++.+.+++...++. ++.++.+|+..+ .++++++|.|++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~--NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK--NLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC--cEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 456899999999999999987 46789999999999999999999888874 899999999764 5778999999987
Q ss_pred ccccCcccH------HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhh----hh-cCCcccchHHHHHHH
Q 022248 202 LVLCSVKDV------DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQ----IV-SDGCHLTRQTGNNIS 270 (300)
Q Consensus 202 ~~l~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~l~ 270 (300)
+...+.... ..++.++.|+|+|||.+.+.+... ....+....+..... .. ........++++...
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~----~y~~~~~e~~~~~~~~~~~~~~~~~~~i~TkyE~r~~ 275 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE----LYFEFSLELFLKLPKAKIEIKKNAQLEVSSKYEDRWK 275 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH----HHHHHHHHHHHhCCCceeecccCCCCCCCCHHHHHHH
Confidence 654433221 578999999999999999976322 222332222211100 00 011122347777788
Q ss_pred hcCCcEEEEe
Q 022248 271 EAGFSSVELG 280 (300)
Q Consensus 271 ~aGf~~v~~~ 280 (300)
+.|-.+-.+.
T Consensus 276 ~~G~~Iy~l~ 285 (390)
T PRK14121 276 KQNKDIYDLR 285 (390)
T ss_pred HCCCCEEEEE
Confidence 8888765553
No 87
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.55 E-value=1.4e-13 Score=121.75 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=84.9
Q ss_pred CCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
..+|||+|||+|.++..+++ .+..+++++|+|+.+++.++++++..+.. ..+++++..|.... +++++||+|+|+--
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 46999999999999999987 46789999999999999999998877542 23788888887542 24468999999755
Q ss_pred ccCc---c--cHHHHHHHHHHcccCCcEEEEEec
Q 022248 204 LCSV---K--DVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 204 l~~~---~--~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+|.. . ....+++.+.++|+|||.|+++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 5432 2 235789999999999999999863
No 88
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.54 E-value=1.2e-13 Score=113.53 Aligned_cols=98 Identities=21% Similarity=0.302 Sum_probs=77.7
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--------CCCC
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA 193 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~ 193 (300)
.++.+|||||||+|.++..+++. ....|+|||+++ + ... +++.++++|+...+ +.++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~--~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI--VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC--CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 56789999999999999998874 346899999988 1 111 46899999998753 5678
Q ss_pred cccEEEEcccccCcccH-----------HHHHHHHHHcccCCcEEEEEeccc
Q 022248 194 SVDAVVGTLVLCSVKDV-----------DMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
.||+|++..+.+...++ ..+++++.++|||||.|++..+..
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 99999998776654321 457899999999999999987544
No 89
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.54 E-value=1.2e-13 Score=118.09 Aligned_cols=136 Identities=19% Similarity=0.261 Sum_probs=99.7
Q ss_pred HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD 192 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 192 (300)
+...++++.+..++.+|||+|||+|.++...++....+++|+|+++.+++.|+++++.+++. .++.+. ...+ ...
T Consensus 149 ~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-~~~~v~--~~~~--~~~ 223 (295)
T PF06325_consen 149 RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-DRIEVS--LSED--LVE 223 (295)
T ss_dssp HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-TCEEES--CTSC--TCC
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-eeEEEE--Eecc--ccc
Confidence 34455666666788999999999999999988765568999999999999999999999986 356543 2222 234
Q ss_pred CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248 193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA 272 (300)
Q Consensus 193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 272 (300)
+.||+|+++-... -...++..+.++|+|||+++++...... .+++.+.+++
T Consensus 224 ~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~~~-------------------------~~~v~~a~~~- 274 (295)
T PF06325_consen 224 GKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGILEEQ-------------------------EDEVIEAYKQ- 274 (295)
T ss_dssp S-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEGGG-------------------------HHHHHHHHHT-
T ss_pred ccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEccccHHH-------------------------HHHHHHHHHC-
Confidence 8999999864332 2345678899999999999998854321 1367788876
Q ss_pred CCcEEEEeee
Q 022248 273 GFSSVELGNA 282 (300)
Q Consensus 273 Gf~~v~~~~~ 282 (300)
||++++....
T Consensus 275 g~~~~~~~~~ 284 (295)
T PF06325_consen 275 GFELVEEREE 284 (295)
T ss_dssp TEEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 9998777654
No 90
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.54 E-value=2.2e-13 Score=108.47 Aligned_cols=105 Identities=29% Similarity=0.368 Sum_probs=85.5
Q ss_pred CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
+..+|||+|||+|.++..+++. +..+++++|+++.+++.++++++..++. +++++..|..+. .+++.||+|+++--
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~--~v~~~~~d~~~~-~~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE--NVEVVQSDLFEA-LPDGKFDLIVSNPP 107 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT--TEEEEESSTTTT-CCTTCEEEEEE---
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc--cccccccccccc-ccccceeEEEEccc
Confidence 6789999999999999999874 4457999999999999999999999875 499999997553 23689999999865
Q ss_pred ccCccc-----HHHHHHHHHHcccCCcEEEEEec
Q 022248 204 LCSVKD-----VDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 204 l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
++.-.+ ...++++..++|||||.++++..
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 544332 46789999999999999987664
No 91
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.53 E-value=4.4e-14 Score=105.47 Aligned_cols=106 Identities=24% Similarity=0.370 Sum_probs=87.2
Q ss_pred CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEccc
Q 022248 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLV 203 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~ 203 (300)
+.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++. ++++++++|+.+.. +++++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD-DRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT-TTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC-ceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4589999999999999998755689999999999999999999988774 57999999998865 77899999999654
Q ss_pred ccCc--------ccHHHHHHHHHHcccCCcEEEEEec
Q 022248 204 LCSV--------KDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 204 l~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.... .....+++++.++|||||.++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4322 1235789999999999999999764
No 92
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.51 E-value=1.4e-13 Score=110.63 Aligned_cols=147 Identities=18% Similarity=0.126 Sum_probs=102.6
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
...+.||.|+|.|+.+..++-....+|..+|+.+..++.|++.+....- ...++++..+++...+.+.||+|++-+++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~--~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP--RVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC--CEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC--CcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4578999999999999988766667999999999999999977644211 24577777777765455799999999999
Q ss_pred cCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248 205 CSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 205 ~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 282 (300)
.|+.|. ..+|+++...|+|+|.+++-++....... .++... ..-.++.+.++++|++||+++|..+.+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~-------~~D~~D---sSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD-------EFDEED---SSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE-------EEETTT---TEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc-------ccCCcc---CeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 999765 57899999999999999999977654311 111111 112355679999999999999988765
Q ss_pred c
Q 022248 283 F 283 (300)
Q Consensus 283 ~ 283 (300)
.
T Consensus 203 ~ 203 (218)
T PF05891_consen 203 K 203 (218)
T ss_dssp T
T ss_pred c
Confidence 3
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.51 E-value=4.2e-13 Score=117.89 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=85.9
Q ss_pred CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
...+|||+|||+|.++..+++. +..+++++|+++.+++.++++++..++ ..+++..|.... .++.||+|+++..
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l---~~~~~~~D~~~~--~~~~fDlIvsNPP 270 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL---EGEVFASNVFSD--IKGRFDMIISNPP 270 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCEEEEcccccc--cCCCccEEEECCC
Confidence 3568999999999999998874 567999999999999999999988876 346677776542 2578999999887
Q ss_pred ccCc-----ccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 204 LCSV-----KDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 204 l~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
+|.. .....+++++.++|||||.++++....
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 7753 234688999999999999999987543
No 94
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.50 E-value=4.3e-12 Score=105.61 Aligned_cols=166 Identities=16% Similarity=0.143 Sum_probs=123.8
Q ss_pred HHHHHHHHhhc--CCCCeEEEECCCCChhHHHhHhC-C--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc
Q 022248 113 GYKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAAD-T--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187 (300)
Q Consensus 113 ~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~ 187 (300)
..+.+.+..+. ..+.+||||+||.|.+...+... + ...+...|.++..++..++.+++.|+. +.++|.++|+.+
T Consensus 121 ~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-~i~~f~~~dAfd 199 (311)
T PF12147_consen 121 ELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-DIARFEQGDAFD 199 (311)
T ss_pred HHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-cceEEEecCCCC
Confidence 34444444443 46789999999999998887763 3 368999999999999999999999996 455999999865
Q ss_pred C---CCCCCcccEEEEcccccCcccH---HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCccc
Q 022248 188 I---PVSDASVDAVVGTLVLCSVKDV---DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHL 261 (300)
Q Consensus 188 ~---~~~~~~~D~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (300)
. .--+...++++.+...+.++|- ...++-+.+.+.|||+++.......+..++.............|.. ...+
T Consensus 200 ~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvM-RrRs 278 (311)
T PF12147_consen 200 RDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVM-RRRS 278 (311)
T ss_pred HhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEE-EecC
Confidence 3 2224568999999999999874 3568999999999999999987777765544444322222112221 3567
Q ss_pred chHHHHHHHhcCCcEEEEe
Q 022248 262 TRQTGNNISEAGFSSVELG 280 (300)
Q Consensus 262 ~~~~~~~l~~aGf~~v~~~ 280 (300)
..|+.++++.|||+.+...
T Consensus 279 q~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 279 QAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred HHHHHHHHHHcCCchhhhe
Confidence 8899999999999976654
No 95
>PTZ00146 fibrillarin; Provisional
Probab=99.50 E-value=9.4e-13 Score=111.47 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=92.4
Q ss_pred CCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC---CCCCCcccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v 198 (300)
.++.+|||+|||+|.++..+++.. ...|+++|+++.+++.+.+.++.. .++.++.+|+... ....+.||+|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCccChhhhhcccCCCCEE
Confidence 577899999999999999999853 458999999987665555444322 4788999998542 2234589999
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 278 (300)
++... ...+...++.++.++|||||.|++.......+.. .+... .+. +++ +.|+++||+.++
T Consensus 207 ~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g---------~~pe~-----~f~-~ev-~~L~~~GF~~~e 268 (293)
T PTZ00146 207 FADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCIDST---------AKPEV-----VFA-SEV-QKLKKEGLKPKE 268 (293)
T ss_pred EEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccccccC---------CCHHH-----HHH-HHH-HHHHHcCCceEE
Confidence 98764 2223345667899999999999995322111100 00000 011 245 778999999877
Q ss_pred Eeee
Q 022248 279 LGNA 282 (300)
Q Consensus 279 ~~~~ 282 (300)
....
T Consensus 269 ~v~L 272 (293)
T PTZ00146 269 QLTL 272 (293)
T ss_pred EEec
Confidence 7654
No 96
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.49 E-value=1.2e-12 Score=112.83 Aligned_cols=103 Identities=20% Similarity=0.260 Sum_probs=82.2
Q ss_pred CeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc----
Q 022248 127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT---- 201 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~---- 201 (300)
.+|||+|||+|.++..++.. ++.+++++|+|+.+++.|+++++..++. .++.|+.+|+.+ +++++.||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~-~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE-HRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 68999999999999999874 4579999999999999999999888764 359999999865 3444589999985
Q ss_pred ---------ccccCcc------------cHHHHHHHHHHcccCCcEEEEEe
Q 022248 202 ---------LVLCSVK------------DVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 202 ---------~~l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.+..+-+ ....++.++.++|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1122211 34568899999999999988754
No 97
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.48 E-value=1.9e-12 Score=114.67 Aligned_cols=142 Identities=20% Similarity=0.212 Sum_probs=100.9
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-C
Q 022248 114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-S 191 (300)
Q Consensus 114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 191 (300)
+...++..+. ++.+|||+|||+|.++..++. .++.+++++|+|+.+++.|+++++..+. ++.++.+|+.+..+ .
T Consensus 241 LVe~aL~~l~-~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~---rV~fi~gDl~e~~l~~ 316 (423)
T PRK14966 241 LVEAVLARLP-ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA---RVEFAHGSWFDTDMPS 316 (423)
T ss_pred HHHHhhhccC-CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---cEEEEEcchhcccccc
Confidence 3333444332 456999999999999998876 4678999999999999999999987763 78999999865432 2
Q ss_pred CCcccEEEEccccc-----C----------------ccc----HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH
Q 022248 192 DASVDAVVGTLVLC-----S----------------VKD----VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN 246 (300)
Q Consensus 192 ~~~~D~v~~~~~l~-----~----------------~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 246 (300)
.++||+|+++---. . -.+ ...+++.+.+.|+|||.+++... . .
T Consensus 317 ~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~-~---------- 384 (423)
T PRK14966 317 EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-F-D---------- 384 (423)
T ss_pred CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-c-c----------
Confidence 45799999953100 0 001 23567777889999999876441 1 1
Q ss_pred hhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248 247 VVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLS 285 (300)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 285 (300)
..+.+.+++++.||..+++......
T Consensus 385 --------------Q~e~V~~ll~~~Gf~~v~v~kDl~G 409 (423)
T PRK14966 385 --------------QGAAVRGVLAENGFSGVETLPDLAG 409 (423)
T ss_pred --------------HHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 0137788888999998887654444
No 98
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.48 E-value=1.3e-12 Score=106.62 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~ 201 (300)
.++.+|||+|||+|.++..+++ .++.+++++|+++.+++.++++++..++. +++++.+|+.. ++.....+|.++..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK--NVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--CeEEEECchHHHHhhCCCCCCEEEEE
Confidence 4678999999999999998875 35679999999999999999999887763 79999998854 22222346776553
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
. ..+...+++++.++|+|||++++...
T Consensus 117 ~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 117 G----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred C----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 2 23557889999999999999999874
No 99
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.47 E-value=1.6e-12 Score=111.86 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=82.7
Q ss_pred CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc-
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL- 202 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~- 202 (300)
++.+|||+|||+|.++..++.. ++.+++++|+|+.+++.|+++++..++. .++.++.+|+.+. ++++.||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~-~~i~~~~~D~~~~-~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE-DRVTLIQSDLFAA-LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhhc-cCCCCccEEEECCC
Confidence 4578999999999999999874 5679999999999999999999988874 4799999997542 3456899999851
Q ss_pred -----cc-------cCc------------ccHHHHHHHHHHcccCCcEEEEEe
Q 022248 203 -----VL-------CSV------------KDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 203 -----~l-------~~~------------~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.+ .+- .....+++++.++|+|||++++..
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 01 111 112567899999999999998744
No 100
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.47 E-value=2.2e-12 Score=108.83 Aligned_cols=135 Identities=19% Similarity=0.158 Sum_probs=98.5
Q ss_pred CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
.+..+|||||+|.|.++..+++ .++.+++..|. +.+++.+++ .++++++.+|+. -+++. +|++++.+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f-~~~P~--~D~~~l~~ 166 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFF-DPLPV--ADVYLLRH 166 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TT-TCCSS--ESEEEEES
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHH-hhhcc--ccceeeeh
Confidence 3557899999999999999987 68899999998 888888887 269999999998 55654 99999999
Q ss_pred cccCcccH--HHHHHHHHHcccCC--cEEEEEecccCCCchHHHHH--HHhhh-hhhhhhcCCcccchHHHHHHH
Q 022248 203 VLCSVKDV--DMTLQEVRRVLKPG--GIYLFVEHVAAKDGTFLKFW--QNVVD-PLQQIVSDGCHLTRQTGNNIS 270 (300)
Q Consensus 203 ~l~~~~~~--~~~l~~~~~~Lkpg--G~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~l~ 270 (300)
++|.+++. ..+|+++++.|+|| |+|+|.+....+........ ...+. .+.....+..++.+||+++|.
T Consensus 167 vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 167 VLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 99999765 47899999999999 99999998765443221111 01111 112222356788889988874
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.47 E-value=1.1e-12 Score=108.35 Aligned_cols=100 Identities=23% Similarity=0.208 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++++..++. ++++..+|........+.||+|++...
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH--NVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC--ceEEEECCcccCCCcCCCcCEEEEccC
Confidence 467899999999999998777643 48999999999999999999888764 799999997653223478999999876
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+.++ .+++.+.|+|||++++...
T Consensus 154 ~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhh------hHHHHHhcCCCcEEEEEEc
Confidence 6654 3567899999999998653
No 102
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.46 E-value=2.5e-13 Score=108.45 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=113.0
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
+....++|||||-|.....+....-.+++-+|.|-.|++.++..- ..+ -.+...++|-+.++|.++++|+|+++..
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~---i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPS---IETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCc---eEEEEEecchhcccccccchhhhhhhhh
Confidence 456789999999999999998766678999999999999987542 122 2466788999999999999999999999
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh-hhhhhh-hc-CCcccchHHHHHHHhcCCcEEEEe
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV-DPLQQI-VS-DGCHLTRQTGNNISEAGFSSVELG 280 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~l~~aGf~~v~~~ 280 (300)
+|++.|....+.+|+..|||+|.|+.+-.....--++...++..- ...+.. .+ .++.-..++..+|.+|||..+.+.
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 999999999999999999999999987654433212222221110 000100 00 122334689999999999976665
No 103
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.6e-12 Score=104.12 Aligned_cols=108 Identities=21% Similarity=0.277 Sum_probs=90.4
Q ss_pred HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (300)
Q Consensus 115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 193 (300)
...+++.+. .++.+|||||||+|+.+.-|++-.+ +|+.+|..+...+.|+++++..++. |+.++++|...---+.+
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~--nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE--NVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC--ceEEEECCcccCCCCCC
Confidence 334444444 5789999999999999988886434 9999999999999999999999974 79999999876433458
Q ss_pred cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.||.|++..+...+| +.+.+.||+||++++..
T Consensus 138 PyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 138 PYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CcCEEEEeeccCCCC------HHHHHhcccCCEEEEEE
Confidence 999999999888877 56888999999999966
No 104
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.46 E-value=7.2e-13 Score=108.19 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=80.2
Q ss_pred CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||||||+|+++..++. .....|+++|..+..++.|++++...+.. ++.++.+|....--..+.||.|++.
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~--nv~~~~gdg~~g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID--NVEVVVGDGSEGWPEEAPFDRIIVT 148 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH--SEEEEES-GGGTTGGG-SEEEEEES
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC--ceeEEEcchhhccccCCCcCEEEEe
Confidence 6889999999999999988876 34457999999999999999999988874 8999999986643345789999999
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.....++ ..+.+.|++||+|++.-.
T Consensus 149 ~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 149 AAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp SBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred eccchHH------HHHHHhcCCCcEEEEEEc
Confidence 8887665 568888999999999553
No 105
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=2e-12 Score=112.18 Aligned_cols=103 Identities=18% Similarity=0.149 Sum_probs=81.7
Q ss_pred CeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc---
Q 022248 127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL--- 202 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~--- 202 (300)
.+|||+|||+|.++..++.. +..+++++|+|+.+++.|+++++..++. .+++++.+|+.+. +++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE-DRVTLIESDLFAA-LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CcEEEEECchhhh-CCCCCccEEEECCCCC
Confidence 68999999999999999874 5679999999999999999999988764 4799999997542 2356899999861
Q ss_pred ---c-------ccCcc------------cHHHHHHHHHHcccCCcEEEEEe
Q 022248 203 ---V-------LCSVK------------DVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 203 ---~-------l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
. ..+-+ ....+++++.++|+|||.+++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 0 01111 12567899999999999999843
No 106
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.45 E-value=1.8e-12 Score=107.03 Aligned_cols=131 Identities=18% Similarity=0.251 Sum_probs=102.6
Q ss_pred CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT 201 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~ 201 (300)
...+|||+|||+|.+++.++++ ...++++||+.+.+.+.|+++++.+++. ++++++++|+.... ..-.+||+|+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE-ERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch-hceeEehhhHHHhhhcccccccCEEEeC
Confidence 4789999999999999999986 5589999999999999999999998886 79999999998763 344579999996
Q ss_pred ccccCc------------------ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccch
Q 022248 202 LVLCSV------------------KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTR 263 (300)
Q Consensus 202 ~~l~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (300)
=-.+.. -+.+.+++...++|||||.+.++-... . ..
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e--r------------------------l~ 176 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE--R------------------------LA 176 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH--H------------------------HH
Confidence 221111 134678999999999999999987311 0 11
Q ss_pred HHHHHHHhcCCcEEEEeee
Q 022248 264 QTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 264 ~~~~~l~~aGf~~v~~~~~ 282 (300)
++.+++.+.+|+...+...
T Consensus 177 ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 177 EIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred HHHHHHHhcCCCceEEEEe
Confidence 6677777777776555544
No 107
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.43 E-value=6.9e-13 Score=105.39 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=78.8
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~~ 203 (300)
...-|||||||+|..+..+.+ .+..++|+|+|+.|++.|.+..- .-.++.+|+ +-+||+.++||.+|+..+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~-~Gh~wiGvDiSpsML~~a~~~e~-------egdlil~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSD-SGHQWIGVDISPSMLEQAVEREL-------EGDLILCDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred CCcEEEEeccCCCcchheecc-CCceEEeecCCHHHHHHHHHhhh-------hcCeeeeecCCCCCCCCCccceEEEeee
Confidence 467899999999988877764 56899999999999999987422 124566666 568999999999999888
Q ss_pred ccCcc-------c----HHHHHHHHHHcccCCcEEEEEe
Q 022248 204 LCSVK-------D----VDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 204 l~~~~-------~----~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+.++- + ...++..++.+|++|++.++--
T Consensus 122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 77661 1 2356888999999999998854
No 108
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.42 E-value=9.6e-12 Score=97.53 Aligned_cols=107 Identities=20% Similarity=0.275 Sum_probs=89.4
Q ss_pred HHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCccc
Q 022248 119 FDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD 196 (300)
Q Consensus 119 ~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 196 (300)
+..+. .++.+++|||||+|..+..++. .+..+++++|-++++++..+++.+..++ ++++++.+++.+.--...++|
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~--~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV--DNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC--CcEEEEeccchHhhcCCCCCC
Confidence 33443 6789999999999999999985 4678999999999999999999999996 599999999865421223799
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.|+.... .+.+.+++.+...|||||++++--
T Consensus 105 aiFIGGg----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 105 AIFIGGG----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred EEEECCC----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 9999876 356778999999999999999854
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.42 E-value=2.8e-12 Score=92.71 Aligned_cols=101 Identities=34% Similarity=0.496 Sum_probs=84.8
Q ss_pred eEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEEEcccccC
Q 022248 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTLVLCS 206 (300)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~l~~ 206 (300)
+|+|+|||.|.++..++.....+++++|+++.+++.+++....... .++.++..|..+... ..+.||+|++...+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA--DNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc--cceEEEEcChhhhccccCCceEEEEEccceee
Confidence 5899999999999988875677999999999999998864333332 478899999877653 5678999999999988
Q ss_pred -cccHHHHHHHHHHcccCCcEEEEE
Q 022248 207 -VKDVDMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 207 -~~~~~~~l~~~~~~LkpgG~l~~~ 230 (300)
......+++.+.+.|+|||.+++.
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677788999999999999999885
No 110
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=2.8e-12 Score=111.37 Aligned_cols=100 Identities=27% Similarity=0.222 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||+|||+|.++..+++..+ ..++++|+++.+++.|+++++..+. +++.++.+|+.......+.||+|++.
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~--~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI--ENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEeCChhhcccccCCccEEEEC
Confidence 4678999999999999999987433 4799999999999999999988876 47999999987665455789999998
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
..+.++ ...+.+.|+|||++++..
T Consensus 157 ~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHh------HHHHHHhcCCCCEEEEEe
Confidence 665544 345778999999998853
No 111
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=1.8e-11 Score=105.35 Aligned_cols=129 Identities=24% Similarity=0.294 Sum_probs=95.5
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
.++.+|||+|||+|.++..++.. +..+++++|+++.+++.+++++. ... ..++.++.+|+... +.+++||+|+++-
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~-~~~i~~~~~d~~~~-~~~~~fD~Iv~np 183 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL-GARVEFLQGDWFEP-LPGGRFDLIVSNP 183 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC-CCcEEEEEccccCc-CCCCceeEEEECC
Confidence 45679999999999999999874 46799999999999999999987 222 24799999998543 2357899999852
Q ss_pred ccc--------------------------CcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhc
Q 022248 203 VLC--------------------------SVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVS 256 (300)
Q Consensus 203 ~l~--------------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (300)
-.. .+.....+++++.++|+|||++++.. ...
T Consensus 184 Py~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~--g~~-------------------- 241 (275)
T PRK09328 184 PYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI--GYD-------------------- 241 (275)
T ss_pred CcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE--Cch--------------------
Confidence 110 01123567888899999999999843 100
Q ss_pred CCcccchHHHHHHHhcCCcEEEEee
Q 022248 257 DGCHLTRQTGNNISEAGFSSVELGN 281 (300)
Q Consensus 257 ~~~~~~~~~~~~l~~aGf~~v~~~~ 281 (300)
..+++.+++.+.||..+++..
T Consensus 242 ----~~~~~~~~l~~~gf~~v~~~~ 262 (275)
T PRK09328 242 ----QGEAVRALLAAAGFADVETRK 262 (275)
T ss_pred ----HHHHHHHHHHhCCCceeEEec
Confidence 012678888899999777753
No 112
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.41 E-value=2.8e-12 Score=102.04 Aligned_cols=122 Identities=24% Similarity=0.260 Sum_probs=79.3
Q ss_pred HHHHHhhc--CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248 116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (300)
Q Consensus 116 ~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 193 (300)
..+++.+. ++...|.|+|||.+.++..+. ...+|...|+... +-.++.+|+..+|++++
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~-----------------n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP-----------------NPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH----S---EEEEESS-S-----------------STTEEES-TTS-S--TT
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhcc--cCceEEEeeccCC-----------------CCCEEEecCccCcCCCC
Confidence 33444443 345789999999998886653 3457999998653 22467899999999999
Q ss_pred cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcC
Q 022248 194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG 273 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 273 (300)
++|++++..+|.. .|...++.|..|+|||||.|.|.+....- ...+++.+.++..|
T Consensus 122 svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf-----------------------~~~~~F~~~~~~~G 177 (219)
T PF05148_consen 122 SVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSRF-----------------------ENVKQFIKALKKLG 177 (219)
T ss_dssp -EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG------------------------S-HHHHHHHHHCTT
T ss_pred ceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecccC-----------------------cCHHHHHHHHHHCC
Confidence 9999999888876 68899999999999999999999843211 12347888899999
Q ss_pred CcEEEEe
Q 022248 274 FSSVELG 280 (300)
Q Consensus 274 f~~v~~~ 280 (300)
|+.+..+
T Consensus 178 F~~~~~d 184 (219)
T PF05148_consen 178 FKLKSKD 184 (219)
T ss_dssp EEEEEEE
T ss_pred CeEEecc
Confidence 9987754
No 113
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.40 E-value=2.7e-13 Score=109.36 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=75.0
Q ss_pred CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccC
Q 022248 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS 206 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 206 (300)
..++|+|||+|..++.++.. .-+|+|+|+|+.|++.|++........ ....+...+..++--.++++|+|++..++|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~-t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCH-TPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCccccc-CCccccccccccccCCCcceeeehhhhhHHh
Confidence 48999999999777777754 559999999999999998874332211 1222333333444334899999999999999
Q ss_pred cccHHHHHHHHHHcccCCc-EEEEEe
Q 022248 207 VKDVDMTLQEVRRVLKPGG-IYLFVE 231 (300)
Q Consensus 207 ~~~~~~~l~~~~~~LkpgG-~l~~~~ 231 (300)
+ |.+.+++++.|+||++| .+.+=.
T Consensus 113 F-dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 113 F-DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred h-chHHHHHHHHHHcCCCCCEEEEEE
Confidence 8 77788999999998866 555533
No 114
>PHA03411 putative methyltransferase; Provisional
Probab=99.40 E-value=5.8e-12 Score=105.52 Aligned_cols=124 Identities=13% Similarity=0.147 Sum_probs=92.8
Q ss_pred CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
...+|||+|||+|.++..++.. .+.+++++|+++.+++.++++. +++.++.+|+..... ++.||+|+++-.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIsNPP 135 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVISNPP 135 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEEcCC
Confidence 4579999999999998888764 3579999999999999998763 368899999987653 468999999766
Q ss_pred ccCccc--------------------HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccch
Q 022248 204 LCSVKD--------------------VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTR 263 (300)
Q Consensus 204 l~~~~~--------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (300)
..+.+. ...++.....+|+|+|.+++.-.... ......+.+
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~-------------------~y~~sl~~~ 196 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP-------------------YYDGTMKSN 196 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc-------------------cccccCCHH
Confidence 555321 23566777889999997777621110 012345567
Q ss_pred HHHHHHHhcCCc
Q 022248 264 QTGNNISEAGFS 275 (300)
Q Consensus 264 ~~~~~l~~aGf~ 275 (300)
+++++|+++||.
T Consensus 197 ~y~~~l~~~g~~ 208 (279)
T PHA03411 197 KYLKWSKQTGLV 208 (279)
T ss_pred HHHHHHHhcCcE
Confidence 899999999997
No 115
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.39 E-value=3.5e-12 Score=104.87 Aligned_cols=140 Identities=9% Similarity=0.069 Sum_probs=99.3
Q ss_pred CchhHHHHHHHHHhhhhHhH-HHHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHH
Q 022248 88 RPDWYEEFYASVMNSSMKSY-EAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQ 165 (300)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~ 165 (300)
..+||++.|..- ...| .......+.+.+..+. .++.+||+.|||.|.-...|++ .+..|+|+|+|+.+++.+.
T Consensus 8 ~~~fW~~rw~~~----~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~-~G~~V~GvDlS~~Ai~~~~ 82 (226)
T PRK13256 8 NNQYWLDRWQND----DVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLS-KGVKVIGIELSEKAVLSFF 82 (226)
T ss_pred CHHHHHHHHhcC----CCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHh-CCCcEEEEecCHHHHHHHH
Confidence 335666655532 2223 1122333333344443 3568999999999999999986 4778999999999999986
Q ss_pred HHHHH-------c---CCCCCCEEEEecccCcCCCC---CCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEE
Q 022248 166 TAAVA-------A---GLPLTNFKFLQAVGEAIPVS---DASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 166 ~~~~~-------~---~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~ 230 (300)
+.... . .....++++.++|+.+++.. .+.||+|+-..+++.++. ..+..+.+.++|+|||.++++
T Consensus 83 ~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 83 SQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred HHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 63210 0 01124789999999998632 268999999999998853 357899999999999999998
Q ss_pred ec
Q 022248 231 EH 232 (300)
Q Consensus 231 ~~ 232 (300)
..
T Consensus 163 ~~ 164 (226)
T PRK13256 163 VM 164 (226)
T ss_pred EE
Confidence 75
No 116
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.39 E-value=9.4e-12 Score=102.47 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=104.7
Q ss_pred HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHH-cC---------CCCCCEEEE
Q 022248 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA-AG---------LPLTNFKFL 181 (300)
Q Consensus 113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~-~~---------~~~~~~~~~ 181 (300)
..+.++++.+. .++.+||..|||.|.-...|++. +.+|+|+|+|+.+++.+.+.... .. ....++++.
T Consensus 24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 34444444433 45679999999999999999975 77999999999999998543221 00 112468999
Q ss_pred ecccCcCCCCC-CcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCC
Q 022248 182 QAVGEAIPVSD-ASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDG 258 (300)
Q Consensus 182 ~~d~~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (300)
++|+..++-.. ++||+|+-...++.++ ......+.+.++|+|||.++++........ .. ....
T Consensus 103 ~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~------------~~--GPPf 168 (218)
T PF05724_consen 103 CGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE------------ME--GPPF 168 (218)
T ss_dssp ES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC------------SS--SSS-
T ss_pred EcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC------------CC--CcCC
Confidence 99998876433 5799999888888774 456789999999999999555543222110 00 0011
Q ss_pred cccchHHHHHHHhcCCcEEEEeeecc
Q 022248 259 CHLTRQTGNNISEAGFSSVELGNAFL 284 (300)
Q Consensus 259 ~~~~~~~~~~l~~aGf~~v~~~~~~~ 284 (300)
..+.+++.+++. .+|++..++....
T Consensus 169 ~v~~~ev~~l~~-~~f~i~~l~~~~~ 193 (218)
T PF05724_consen 169 SVTEEEVRELFG-PGFEIEELEEEDS 193 (218)
T ss_dssp ---HHHHHHHHT-TTEEEEEEEEEE-
T ss_pred CCCHHHHHHHhc-CCcEEEEEecccc
Confidence 335578888887 8999888875443
No 117
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.39 E-value=5.6e-12 Score=103.74 Aligned_cols=95 Identities=24% Similarity=0.333 Sum_probs=76.3
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
...++||||+|.|..+..++. ...+|+++|.|+.|....+++ | ++.+.. .+..-.+.+||+|.|.++|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~k----g-----~~vl~~--~~w~~~~~~fDvIscLNvL 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKK----G-----FTVLDI--DDWQQTDFKFDVISCLNVL 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhC----C-----CeEEeh--hhhhccCCceEEEeehhhh
Confidence 457899999999999999975 445899999999997766654 3 333322 2233234689999999999
Q ss_pred cCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 205 CSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
....++..+|+.+++.|+|+|++++.-
T Consensus 162 DRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 162 DRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999999999999999999999954
No 118
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.39 E-value=1e-11 Score=119.35 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=101.6
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEcc-
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTL- 202 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~- 202 (300)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++++.+++...+++++++|+.+. ....++||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 5789999999999999999875445799999999999999999999887545899999998653 11146899999842
Q ss_pred ----------cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248 203 ----------VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA 272 (300)
Q Consensus 203 ----------~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 272 (300)
......+...++..+.++|+|||.+++....... ....+++.++
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~--------------------------~~~~~~~~~~ 671 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF--------------------------KMDEEGLAKL 671 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC--------------------------ChhHHHHHhC
Confidence 1111234567888999999999999886532110 0125777889
Q ss_pred CCcEEEEeeeccC
Q 022248 273 GFSSVELGNAFLS 285 (300)
Q Consensus 273 Gf~~v~~~~~~~~ 285 (300)
|+....++.....
T Consensus 672 g~~~~~i~~~~~~ 684 (702)
T PRK11783 672 GLKAEEITAKTLP 684 (702)
T ss_pred CCeEEEEecCCCC
Confidence 9997777755544
No 119
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.38 E-value=1e-11 Score=114.92 Aligned_cols=128 Identities=13% Similarity=0.163 Sum_probs=94.7
Q ss_pred CCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc--
Q 022248 126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL-- 202 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-- 202 (300)
+.+|||+|||+|.++..++. .++.+++++|+|+.+++.|++++...++. +++.++.+|+... ++.+.||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~~~D~~~~-~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-DRIQIIHSNWFEN-IEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeeeecchhhh-CcCCCccEEEECCCC
Confidence 46899999999999998876 46789999999999999999999887764 4789999997542 3356899999842
Q ss_pred ------------cccCcc------------cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCC
Q 022248 203 ------------VLCSVK------------DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDG 258 (300)
Q Consensus 203 ------------~l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (300)
+..+-+ ....+++.+.++|+|||.+++.. ...
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi--g~~---------------------- 272 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI--GFK---------------------- 272 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE--CCc----------------------
Confidence 111111 12456788899999999998743 111
Q ss_pred cccchHHHHHHHhcCCcEEEEee
Q 022248 259 CHLTRQTGNNISEAGFSSVELGN 281 (300)
Q Consensus 259 ~~~~~~~~~~l~~aGf~~v~~~~ 281 (300)
..+.+.+++.+.||..+++..
T Consensus 273 --q~~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 273 --QEEAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred --hHHHHHHHHHhcCCCceEEEe
Confidence 012667778888988776653
No 120
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.38 E-value=2.2e-11 Score=111.04 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=88.8
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 197 (300)
.++.+|||+|||+|..+..+++. ...+++++|+++.+++.++++++..|+. ++.++.+|+..++ ...+.||.
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~--~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK--SIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC--eEEEEeCChhhcccccccccccCCE
Confidence 46789999999999999998874 3468999999999999999999998874 7999999998765 44678999
Q ss_pred EEEc------ccccCccc----------------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248 198 VVGT------LVLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 198 v~~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
|++. .++.+-++ ...++.++.+.|||||+|+.++...
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9963 23333332 3567999999999999999987544
No 121
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.36 E-value=3.8e-11 Score=109.92 Aligned_cols=149 Identities=23% Similarity=0.241 Sum_probs=106.2
Q ss_pred HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----
Q 022248 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---- 188 (300)
Q Consensus 114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---- 188 (300)
+...+++.+. .++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.|+++++..++. +++|+.+|+.+.
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~--~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD--NVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEEeChHHhhhhh
Confidence 3344444443 45689999999999999999875 469999999999999999999888874 799999998642
Q ss_pred CCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248 189 PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN 268 (300)
Q Consensus 189 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (300)
++.++.||+|++.---. .....++.+.+ ++|++.++++..... +. .++. .
T Consensus 362 ~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSCnp~t----la---------------------RDl~-~ 411 (443)
T PRK13168 362 PWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSCNPAT----LA---------------------RDAG-V 411 (443)
T ss_pred hhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEeChHH----hh---------------------ccHH-H
Confidence 34457899999742111 12345555555 689999888873211 10 1333 3
Q ss_pred HHhcCCcEEEEeeeccCCcccccceeeEEe
Q 022248 269 ISEAGFSSVELGNAFLSNASLISPHVYGIA 298 (300)
Q Consensus 269 l~~aGf~~v~~~~~~~~~~~~~~~~~~~~~ 298 (300)
|.+.||++.++.-.++ |+.|+|+.-++
T Consensus 412 L~~~gY~l~~i~~~Dm---FP~T~HvE~v~ 438 (443)
T PRK13168 412 LVEAGYRLKRAGMLDM---FPHTGHVESMA 438 (443)
T ss_pred HhhCCcEEEEEEEecc---CCCCCcEEEEE
Confidence 4578999888887766 67788876654
No 122
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.36 E-value=2.2e-11 Score=97.59 Aligned_cols=158 Identities=22% Similarity=0.231 Sum_probs=110.4
Q ss_pred CCC-eEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEecccCcC--CC------CCC
Q 022248 125 KAK-KVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVGEAI--PV------SDA 193 (300)
Q Consensus 125 ~~~-~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~~~~--~~------~~~ 193 (300)
... +|||||||+|..+.++++ .+..++.-.|+++......+..+...++. ++ .-+..|+... +. ..+
T Consensus 24 ~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~--Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 24 DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP--NVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc--ccCCCeEeecCCCCCccccccccCCC
Confidence 444 599999999999999987 57788999999999988888887776653 22 1233344333 22 356
Q ss_pred cccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCC---chHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248 194 SVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKD---GTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN 268 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (300)
.||+|+|.+++|..+ ..+.+++...++|+|||.|++..+..... ..........+.... ...+..+.+++.++
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd--p~~GiRD~e~v~~l 179 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD--PEWGIRDIEDVEAL 179 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC--CCcCccCHHHHHHH
Confidence 899999999999775 44678999999999999999988644221 011111111111111 12357788899999
Q ss_pred HHhcCCcEEEEeeeccCC
Q 022248 269 ISEAGFSSVELGNAFLSN 286 (300)
Q Consensus 269 l~~aGf~~v~~~~~~~~~ 286 (300)
.+++|++.++...+--++
T Consensus 180 A~~~GL~l~~~~~MPANN 197 (204)
T PF06080_consen 180 AAAHGLELEEDIDMPANN 197 (204)
T ss_pred HHHCCCccCcccccCCCC
Confidence 999999987777665554
No 123
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.1e-11 Score=104.37 Aligned_cols=111 Identities=25% Similarity=0.310 Sum_probs=86.5
Q ss_pred HHHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (300)
Q Consensus 118 ~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 195 (300)
+++.+. ..+.+|||+|||.|.++..+++ .+..+++-+|++..+++.++++++.+++. +..++..|... +.++ +|
T Consensus 150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~--~~~v~~s~~~~-~v~~-kf 225 (300)
T COG2813 150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE--NTEVWASNLYE-PVEG-KF 225 (300)
T ss_pred HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC--ccEEEEecccc-cccc-cc
Confidence 344444 3355999999999999999998 46789999999999999999999998874 43455555433 2333 89
Q ss_pred cEEEEcccccCcccH-----HHHHHHHHHcccCCcEEEEEec
Q 022248 196 DAVVGTLVLCSVKDV-----DMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 196 D~v~~~~~l~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+|+|+=-+|.=.+. .+++....+.|++||.|.++-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999998766643222 3789999999999999999986
No 124
>PRK00811 spermidine synthase; Provisional
Probab=99.36 E-value=2.5e-11 Score=104.32 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=84.2
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcC--C-CCCCEEEEecccCcC-CCCCCcccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAG--L-PLTNFKFLQAVGEAI-PVSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~--~-~~~~~~~~~~d~~~~-~~~~~~~D~v 198 (300)
+.+.+||+||||+|..+..+++. ...+++++|+++.+++.|++.+...+ . ..++++++.+|+... ...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 46789999999999999999875 34689999999999999999876532 1 246899999998663 3346789999
Q ss_pred EEcccccCccc----HHHHHHHHHHcccCCcEEEEEe
Q 022248 199 VGTLVLCSVKD----VDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 199 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
++.......+. ...+++.+++.|+|||++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 98654332222 2567899999999999988743
No 125
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.7e-11 Score=99.23 Aligned_cols=103 Identities=24% Similarity=0.274 Sum_probs=91.3
Q ss_pred CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||.|.|+|.++.+|+. .+..+++.+|+.+...+.|+++++..++. +++.+..+|+.+.-+++ .||+|+..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-d~v~~~~~Dv~~~~~~~-~vDav~LD 170 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-DRVTLKLGDVREGIDEE-DVDAVFLD 170 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-cceEEEecccccccccc-ccCEEEEc
Confidence 6899999999999999999986 35579999999999999999999998886 45999999998876654 89999974
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
++++.++++.+.++|||||.+++..++
T Consensus 171 -----mp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 171 -----LPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred -----CCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 589999999999999999999998754
No 126
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.34 E-value=1.3e-11 Score=100.13 Aligned_cols=96 Identities=22% Similarity=0.293 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--------CCCC
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA 193 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~ 193 (300)
.++.+|||+|||+|.++..+++. ...+++++|+++.+ . .+++.++++|+.+.+ ++++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~--~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------P--IENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------c--CCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 57889999999999999888763 34589999999854 1 136788888886542 4567
Q ss_pred cccEEEEccccc--------Cc---ccHHHHHHHHHHcccCCcEEEEEec
Q 022248 194 SVDAVVGTLVLC--------SV---KDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 194 ~~D~v~~~~~l~--------~~---~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.||+|++....+ +. .+...++..+.++|+|||++++..+
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 899999865322 11 1235789999999999999999653
No 127
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.33 E-value=3e-11 Score=97.93 Aligned_cols=105 Identities=30% Similarity=0.380 Sum_probs=83.4
Q ss_pred CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C--CCCCcccEEEE
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--VSDASVDAVVG 200 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~v~~ 200 (300)
....+||||||.|.++..+|. .++..++|+|+....+..+.+++...++ .|+.++++|+..+ . ++++++|.|..
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l--~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL--KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT--SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc--cceEEEEccHHHHHhhcccCCchheEEE
Confidence 344899999999999999987 6889999999999999999999998887 4999999999773 2 56789999998
Q ss_pred cccccCccc--------HHHHHHHHHHcccCCcEEEEEe
Q 022248 201 TLVLCSVKD--------VDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 201 ~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.+---+... ...++..+.++|+|||.+.+.+
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 764333321 1468999999999999999977
No 128
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=9.7e-11 Score=100.24 Aligned_cols=128 Identities=21% Similarity=0.298 Sum_probs=94.6
Q ss_pred eEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc--cc
Q 022248 128 KVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL--VL 204 (300)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~--~l 204 (300)
+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++++..++ .++.++..|+..- . .++||+|+++= +-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l--~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL--VRVLVVQSDLFEP-L-RGKFDLIVSNPPYIP 188 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC--ccEEEEeeecccc-c-CCceeEEEeCCCCCC
Confidence 7999999999999999874 456999999999999999999999987 4677777765432 2 24899999851 11
Q ss_pred cC---c--------------------ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCccc
Q 022248 205 CS---V--------------------KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHL 261 (300)
Q Consensus 205 ~~---~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (300)
.. . .-...++.++.+.|+|||.+++..- .. .
T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g--~~------------------------q 242 (280)
T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG--LT------------------------Q 242 (280)
T ss_pred CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC--CC------------------------c
Confidence 11 0 1124678889999999988888551 11 1
Q ss_pred chHHHHHHHhcC-CcEEEEeeeccC
Q 022248 262 TRQTGNNISEAG-FSSVELGNAFLS 285 (300)
Q Consensus 262 ~~~~~~~l~~aG-f~~v~~~~~~~~ 285 (300)
.+.+.+++.+.| |..+........
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCC
Confidence 237889999999 777777665554
No 129
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.32 E-value=1.7e-11 Score=106.86 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=78.4
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC---------CCCCCEEEEecccCcC------C
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG---------LPLTNFKFLQAVGEAI------P 189 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~---------~~~~~~~~~~~d~~~~------~ 189 (300)
++.+|||+|||-|.-+.-+.......++|+|++...++.|+++.+... .. -...|+.+|.... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~-f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD-FIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC-CEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc-chhheeccccccchhhhhcc
Confidence 778999999998887766666566799999999999999999983211 11 1467788877532 2
Q ss_pred CCCCcccEEEEcccccCc----ccHHHHHHHHHHcccCCcEEEEEec
Q 022248 190 VSDASVDAVVGTLVLCSV----KDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 190 ~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.....||+|-|.+++|+. .....+|+.+...|+|||+++...+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 223599999999999987 2345689999999999999999774
No 130
>PRK03612 spermidine synthase; Provisional
Probab=99.32 E-value=6e-11 Score=110.34 Aligned_cols=108 Identities=21% Similarity=0.186 Sum_probs=82.8
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHH--HHHc---CCCCCCEEEEecccCcC-CCCCCccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTA--AVAA---GLPLTNFKFLQAVGEAI-PVSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~--~~~~---~~~~~~~~~~~~d~~~~-~~~~~~~D 196 (300)
+++++|||||||+|..+..+++.+. .+++++|+++++++.++++ +... .+..++++++.+|+.+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4678999999999999999987655 7999999999999999983 3221 23336899999998763 33347899
Q ss_pred EEEEcccccCccc-----HHHHHHHHHHcccCCcEEEEEe
Q 022248 197 AVVGTLVLCSVKD-----VDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 197 ~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+|++.......+. ..++++.+++.|||||.+++..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9999754333222 1357899999999999988854
No 131
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.32 E-value=4.7e-11 Score=99.81 Aligned_cols=103 Identities=21% Similarity=0.232 Sum_probs=84.3
Q ss_pred CCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-----CCCCccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-----VSDASVD 196 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D 196 (300)
++.+|||+|||+|..+..++.. ...+++++|+++.+++.|+++++..++. ++++++.+|+.+. + .+.++||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 6789999999999988888763 4579999999999999999999999986 6899999998653 2 1246899
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+|++...- +....++..+.+.|+|||.+++-+
T Consensus 147 ~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 99985321 344677899999999999988754
No 132
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=3.4e-11 Score=97.18 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=96.6
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCC-----C-----------------------
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGL-----P----------------------- 174 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~-----~----------------------- 174 (300)
..+..+|||||..|.++..+++. ....++|+||++..++.|++.++...- .
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 56789999999999999999984 445799999999999999997753210 0
Q ss_pred -----CCCEEEEecccC-----cCCCCCCcccEEEEcccccCc------ccHHHHHHHHHHcccCCcEEEEEecccCCCc
Q 022248 175 -----LTNFKFLQAVGE-----AIPVSDASVDAVVGTLVLCSV------KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG 238 (300)
Q Consensus 175 -----~~~~~~~~~d~~-----~~~~~~~~~D~v~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 238 (300)
+.++.|...+.. -+.+....||+|+|..+-.++ .....+++++.++|.|||+|++.-.....
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks-- 214 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS-- 214 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH--
Confidence 001112111110 012345789999997765544 23578999999999999999885422211
Q ss_pred hHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc--CCcEEEE
Q 022248 239 TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA--GFSSVEL 279 (300)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--Gf~~v~~ 279 (300)
... ..+........+..-.+.++.+.+++.+. ||+-++-
T Consensus 215 -Y~k-aar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~ 255 (288)
T KOG2899|consen 215 -YKK-AARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVED 255 (288)
T ss_pred -HHH-HHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecc
Confidence 111 11112222222233455678888888876 6664443
No 133
>PRK01581 speE spermidine synthase; Validated
Probab=99.30 E-value=1.7e-10 Score=100.35 Aligned_cols=138 Identities=17% Similarity=0.149 Sum_probs=95.6
Q ss_pred CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHH--HH---HcCCCCCCEEEEecccCcC-CCCCCccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTA--AV---AAGLPLTNFKFLQAVGEAI-PVSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~--~~---~~~~~~~~~~~~~~d~~~~-~~~~~~~D 196 (300)
..+.+||+||||+|..+..+++.. ..++++||+++.+++.|++. +. ...+..++++++.+|+... ....+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999988888754 46899999999999999962 11 1223346999999999763 44457899
Q ss_pred EEEEcccccC---ccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHh
Q 022248 197 AVVGTLVLCS---VKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISE 271 (300)
Q Consensus 197 ~v~~~~~l~~---~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (300)
+|++...-.. ... -..+++.+++.|+|||++++....+. .. ...+ ..+.+.|++
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~----~~---~~~~--------------~~i~~tL~~ 287 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA----DA---PLVY--------------WSIGNTIEH 287 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh----hh---HHHH--------------HHHHHHHHH
Confidence 9998742111 111 14688999999999999877532110 00 0000 146688888
Q ss_pred cCCcEEEEeee
Q 022248 272 AGFSSVELGNA 282 (300)
Q Consensus 272 aGf~~v~~~~~ 282 (300)
+||........
T Consensus 288 af~~v~~y~t~ 298 (374)
T PRK01581 288 AGLTVKSYHTI 298 (374)
T ss_pred hCCceEEEEEe
Confidence 99987666544
No 134
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.30 E-value=1.1e-10 Score=98.61 Aligned_cols=124 Identities=16% Similarity=0.165 Sum_probs=89.0
Q ss_pred CCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CCCCcccEEEEcc
Q 022248 126 AKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVGTL 202 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~v~~~~ 202 (300)
..+|||+|||+|.++..++.. ++.+++++|+++.+++.|+++++..+ ++++.+|+.+. + ...+.||+|+++-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEEECC
Confidence 458999999999999998863 56799999999999999999987654 36788887542 2 1135799999863
Q ss_pred cc------cCc----------------cc----HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhc
Q 022248 203 VL------CSV----------------KD----VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVS 256 (300)
Q Consensus 203 ~l------~~~----------------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (300)
-. ..+ .+ ...++..+.++|+|||++++... ..+
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~--~~~------------------- 220 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS--ERQ------------------- 220 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC--cch-------------------
Confidence 11 000 01 24677888899999999998652 111
Q ss_pred CCcccchHHHHHHHhcCCcEEEEe
Q 022248 257 DGCHLTRQTGNNISEAGFSSVELG 280 (300)
Q Consensus 257 ~~~~~~~~~~~~l~~aGf~~v~~~ 280 (300)
.+++..+|++.||+..-..
T Consensus 221 -----~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 221 -----APLAVEAFARAGLIARVAS 239 (251)
T ss_pred -----HHHHHHHHHHCCCCceeeE
Confidence 1266778888999854444
No 135
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.29 E-value=3.8e-11 Score=109.32 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=87.5
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC--CCCcccEEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--SDASVDAVVG 200 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~v~~ 200 (300)
.++.+|||+|||+|..+..+++. ...+++++|+++.+++.++++++..++. .++.+..+|....+. ..++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccccccccCEEEE
Confidence 46789999999999999998874 3479999999999999999999988875 345557777665543 4678999995
Q ss_pred c------ccccCccc----------------HHHHHHHHHHcccCCcEEEEEecccC
Q 022248 201 T------LVLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVAA 235 (300)
Q Consensus 201 ~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~ 235 (300)
. .++...++ ...+|.++.++|||||+|++++....
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 34444443 35689999999999999999886553
No 136
>PRK04457 spermidine synthase; Provisional
Probab=99.29 E-value=3.1e-11 Score=102.60 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=82.6
Q ss_pred CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~ 201 (300)
.++.+|||||||+|.++..+++ .+..+++++|+++.+++.|++.+...+. .++++++.+|+.+. .-..++||+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-GERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-CCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 3567999999999999998876 4678999999999999999988754332 25899999998553 2223689999975
Q ss_pred ccc-cCcc---cHHHHHHHHHHcccCCcEEEEEec
Q 022248 202 LVL-CSVK---DVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 202 ~~l-~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
..- ...+ ....+++++.+.|+|||++++-.+
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 311 1112 126889999999999999998543
No 137
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.29 E-value=1.2e-10 Score=104.32 Aligned_cols=109 Identities=19% Similarity=0.114 Sum_probs=84.1
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEEEE
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG 200 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~ 200 (300)
++.+|||+|||+|.++..++.....+++++|+++.+++.|+++++.+++...+++++.+|+.+.- ...++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 57899999999999988766544559999999999999999999998875347999999986641 13468999998
Q ss_pred cccccC---------cccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 201 TLVLCS---------VKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 201 ~~~l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
.--... ..+...++....++|+|||.+++....
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 521110 012345667788999999999987643
No 138
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.29 E-value=6.1e-11 Score=96.58 Aligned_cols=120 Identities=20% Similarity=0.288 Sum_probs=90.5
Q ss_pred HHHHHhhc--CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248 116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (300)
Q Consensus 116 ~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 193 (300)
+.+++.+. +....|.|+|||.+.++. .....|+..|+-.. +-.++.+|+..+|.+++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~-----------------~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV-----------------NERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeecC-----------------CCceeeccccCCcCccC
Confidence 33444443 456789999999996654 33447999997542 45678899999999999
Q ss_pred cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcC
Q 022248 194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG 273 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 273 (300)
+.|++++..+|.. .|...++.|+.|+|+|||.++|.+.... +-+...+.+.|...|
T Consensus 228 svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SR-----------------------f~dv~~f~r~l~~lG 283 (325)
T KOG3045|consen 228 SVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSR-----------------------FSDVKGFVRALTKLG 283 (325)
T ss_pred cccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhh-----------------------cccHHHHHHHHHHcC
Confidence 9999998777765 6888999999999999999999884221 112236778888999
Q ss_pred CcEEEEe
Q 022248 274 FSSVELG 280 (300)
Q Consensus 274 f~~v~~~ 280 (300)
|.+....
T Consensus 284 F~~~~~d 290 (325)
T KOG3045|consen 284 FDVKHKD 290 (325)
T ss_pred Ceeeehh
Confidence 9976554
No 139
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=3e-11 Score=110.58 Aligned_cols=109 Identities=18% Similarity=0.234 Sum_probs=86.6
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||+|||+|..+..+++. ...+++++|+++.+++.++++++..++. +++++.+|+..++ +++.||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--~v~~~~~Da~~~~-~~~~fD~Vl~D 325 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT--IIETIEGDARSFS-PEEQPDAILLD 325 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC--eEEEEeCcccccc-cCCCCCEEEEc
Confidence 46789999999999998888763 3469999999999999999999988874 7999999998765 45789999962
Q ss_pred ------ccccCcc----------------cHHHHHHHHHHcccCCcEEEEEecccC
Q 022248 202 ------LVLCSVK----------------DVDMTLQEVRRVLKPGGIYLFVEHVAA 235 (300)
Q Consensus 202 ------~~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 235 (300)
..+..-+ ....++.++.+.|||||++++.+....
T Consensus 326 ~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 326 APCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1111111 123589999999999999999886554
No 140
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.28 E-value=1.9e-11 Score=102.52 Aligned_cols=122 Identities=18% Similarity=0.272 Sum_probs=93.0
Q ss_pred HHHHHHH-HHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCC----CEEEEeccc
Q 022248 111 VAGYKSQ-LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT----NFKFLQAVG 185 (300)
Q Consensus 111 ~~~~~~~-~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~----~~~~~~~d~ 185 (300)
+..|+.. +++....++..++|+|||-|.-++.+-+..-..++|+||++.-+++|+++.+...-..+ .+.|+++|.
T Consensus 102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 102 FNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred hhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 3344433 45555578889999999999877777655566899999999999999998875432212 478899987
Q ss_pred Cc------CCCCCCcccEEEEcccccCc----ccHHHHHHHHHHcccCCcEEEEEec
Q 022248 186 EA------IPVSDASVDAVVGTLVLCSV----KDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 186 ~~------~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.. +++++.+||+|-|-+++|+. ...+-++.++.+.|+|||++|-..+
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 43 35566679999999999976 2345689999999999999988653
No 141
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.27 E-value=1.7e-10 Score=96.25 Aligned_cols=127 Identities=21% Similarity=0.242 Sum_probs=99.3
Q ss_pred CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC---CCcccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS---DASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v 198 (300)
.++.+|||.|.|+|.++..|++ .+..+|+..|..++..+.|+++++..++. +++++...|+....|. +..+|.|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-DNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-TTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-CCceeEecceecccccccccCcccEE
Confidence 6899999999999999999987 46679999999999999999999999985 6899999999654442 3679999
Q ss_pred EEcccccCcccHHHHHHHHHHcc-cCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEE
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVL-KPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSV 277 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 277 (300)
+.. ++++..++..+.+.| ||||++.+..++... . ....+.|++.||..+
T Consensus 118 fLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ------v-------------------~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 118 FLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCIEQ------V-------------------QKTVEALREHGFTDI 167 (247)
T ss_dssp EEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSHHH------H-------------------HHHHHHHHHTTEEEE
T ss_pred EEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCHHH------H-------------------HHHHHHHHHCCCeee
Confidence 974 488888999999999 899999997753211 0 155677888999987
Q ss_pred EEee
Q 022248 278 ELGN 281 (300)
Q Consensus 278 ~~~~ 281 (300)
++.+
T Consensus 168 ~~~E 171 (247)
T PF08704_consen 168 ETVE 171 (247)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
No 142
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=5.1e-11 Score=108.28 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=88.1
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG 200 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~ 200 (300)
.++.+|||+|||+|..+.+++.. ...+++++|+++.+++.++++++..++. ++.++.+|+..++ +.++.||.|++
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~--~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS--SIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhhhhhhhhccCCEEEE
Confidence 46789999999999999988874 3579999999999999999999998874 6899999988775 44678999996
Q ss_pred cc------cccCcc----------------cHHHHHHHHHHcccCCcEEEEEecccC
Q 022248 201 TL------VLCSVK----------------DVDMTLQEVRRVLKPGGIYLFVEHVAA 235 (300)
Q Consensus 201 ~~------~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 235 (300)
.- ++..-+ ...+++.++.+.|||||.+++++....
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 31 222112 124578999999999999999886543
No 143
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.27 E-value=2.6e-10 Score=99.79 Aligned_cols=137 Identities=14% Similarity=0.115 Sum_probs=96.5
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~ 203 (300)
++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|+++++..++ ++++|+++|+.++.. ..+.||+|++.--
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l--~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL--TNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 4689999999999999999874 57999999999999999999998887 489999999977532 3357999998621
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF 283 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 283 (300)
- ......+.+....++|++.+++++..... .+++..+ .||++.++.-.+
T Consensus 250 r---~G~~~~~~~~l~~~~~~~ivyvsc~p~t~-------------------------~rd~~~l---~~y~~~~~~~~D 298 (315)
T PRK03522 250 R---RGIGKELCDYLSQMAPRFILYSSCNAQTM-------------------------AKDLAHL---PGYRIERVQLFD 298 (315)
T ss_pred C---CCccHHHHHHHHHcCCCeEEEEECCcccc-------------------------hhHHhhc---cCcEEEEEEEec
Confidence 1 11112233334446788877776632211 0133332 589887777665
Q ss_pred cCCcccccceeeEEe
Q 022248 284 LSNASLISPHVYGIA 298 (300)
Q Consensus 284 ~~~~~~~~~~~~~~~ 298 (300)
+ |+.|+|+.-++
T Consensus 299 m---FP~T~HvE~v~ 310 (315)
T PRK03522 299 M---FPHTAHYEVLT 310 (315)
T ss_pred c---CCCCCeEEEEE
Confidence 5 66788876544
No 144
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.27 E-value=6.8e-11 Score=100.80 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=86.4
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||+|||+|..+..+++. ....++++|+++.+++.++++++..++. ++.++..|+..++...+.||.|++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL--NVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC--cEEEecCCHHHhhhhccCCCEEEEc
Confidence 46789999999999999988773 2358999999999999999999998874 7999999987766555679999963
Q ss_pred c------cccCcc----------------cHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 202 L------VLCSVK----------------DVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 202 ~------~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
- ++..-+ ....+|+++.+.|||||+|+.++...
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1 111111 12458999999999999999987544
No 145
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=9.8e-11 Score=106.62 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=84.6
Q ss_pred CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG 200 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~ 200 (300)
.++.+|||+|||+|..+..+++.. +..++++|+++.+++.++++++..++ ++.++++|+..++ +..++||.|++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~---~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL---KATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEcCcccchhhcccCCCCEEEE
Confidence 467899999999999999998743 36999999999999999999988876 3688999987754 34578999995
Q ss_pred cc------cccCcc---------c-------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248 201 TL------VLCSVK---------D-------VDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 201 ~~------~l~~~~---------~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
.- ++..-+ + ...++.++.++|||||++++++...
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 32 111101 1 2368999999999999999987543
No 146
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.25 E-value=1.8e-11 Score=98.18 Aligned_cols=143 Identities=19% Similarity=0.238 Sum_probs=106.8
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~ 201 (300)
.++.+|||.+.|-|+.++..++....+|+-++.++..++.|+-+-...++....+.++.+|+.++ .|+|++||+|+-.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 46899999999999999998877666999999999999999877555555445789999999775 5889999999931
Q ss_pred ---ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248 202 ---LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278 (300)
Q Consensus 202 ---~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 278 (300)
+++-.----+++.+|++|+|||||.++-..-++... ..+.-.+..+.+.|+++||++|.
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r------------------yrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR------------------YRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc------------------cccCChhHHHHHHHHhcCceeee
Confidence 111110012568899999999999999876443321 01122345889999999999887
Q ss_pred Eeeecc
Q 022248 279 LGNAFL 284 (300)
Q Consensus 279 ~~~~~~ 284 (300)
.....+
T Consensus 275 ~~~~~~ 280 (287)
T COG2521 275 KVREAL 280 (287)
T ss_pred eehhcc
Confidence 765543
No 147
>PLN02366 spermidine synthase
Probab=99.24 E-value=3.8e-10 Score=97.60 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=83.0
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcC--CCCCCcccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI--PVSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~--~~~~~~~D~v 198 (300)
+.+++||+||||.|.++..+++.+. .+++.+|+++.+++.+++.+... ++..++++++.+|+... ..+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999988654 58999999999999999987643 34446899999997543 1235689999
Q ss_pred EEcccccCccc----HHHHHHHHHHcccCCcEEEEE
Q 022248 199 VGTLVLCSVKD----VDMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 199 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~ 230 (300)
++...-...+. ...+++.+++.|+|||++++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 98543322221 246799999999999998763
No 148
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=1e-10 Score=93.10 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=74.6
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++... ++++++.+|+.++++++..||.|+++.-
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~~~~~~~~~~~d~vi~n~P 86 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDALKFDLPKLQPYKVVGNLP 86 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC----CCEEEEECchhcCCccccCCCEEEECCC
Confidence 45679999999999999999976 679999999999999999887431 4899999999999887777999988643
Q ss_pred ccCcccHHHHHHHHHHc--ccCCcEEEE
Q 022248 204 LCSVKDVDMTLQEVRRV--LKPGGIYLF 229 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~--LkpgG~l~~ 229 (300)
+++. ...+..+.+. +.++|.+++
T Consensus 87 -y~~~--~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 87 -YNIS--TPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred -cccH--HHHHHHHHhcCCCcceEEEEE
Confidence 3332 2334444433 346666665
No 149
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.22 E-value=3.4e-10 Score=96.88 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcC--CCCCCEEEEecccCcC-CCCCCcccEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAI-PVSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~-~~~~~~~D~v~ 199 (300)
+.+.+||+||||+|.++..+++.. ..+++++|+++.+++.+++.+...+ +..++++++.+|.... ...+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345699999999999998888754 5689999999999999999875432 2235788888887542 22247899999
Q ss_pred EcccccCcc--c--HHHHHHHHHHcccCCcEEEEEe
Q 022248 200 GTLVLCSVK--D--VDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 200 ~~~~l~~~~--~--~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+......-+ + ...+++.+.++|+|||++++..
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 865422211 2 3578899999999999999864
No 150
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=99.21 E-value=1.6e-10 Score=96.64 Aligned_cols=165 Identities=18% Similarity=0.156 Sum_probs=101.6
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC---------------C-----------CC
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP---------------L-----------TN 177 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~---------------~-----------~~ 177 (300)
.++.++||||||.-.+-..-+.....+++..|.++..++..++.++..+.- . ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 456799999999976643334345568999999999999888876543210 0 01
Q ss_pred E-EEEecccCcC-CCCC-----CcccEEEEcccccCc-cc---HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH
Q 022248 178 F-KFLQAVGEAI-PVSD-----ASVDAVVGTLVLCSV-KD---VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN 246 (300)
Q Consensus 178 ~-~~~~~d~~~~-~~~~-----~~~D~v~~~~~l~~~-~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 246 (300)
| .++.+|+.+. |+.. .+||+|++.++++.. +| ....++++.++|||||.|++........
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~--------- 205 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY--------- 205 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE---------
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee---------
Confidence 2 2566677553 2322 359999999999876 34 4578999999999999999988543220
Q ss_pred hhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccCCcccccceeeEEecC
Q 022248 247 VVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASLISPHVYGIAHK 300 (300)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~k 300 (300)
+.-....+..-..+.+.+++.|+++||.+++.+. -....--.-.++.+|+|
T Consensus 206 -Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~--~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 206 -YMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK--QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp -EEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG---TTTB---EEEEEEEEE
T ss_pred -EEECCEecccccCCHHHHHHHHHHcCCEEEeccc--ccCcCCCCcEEEEEEeC
Confidence 1111111223345678999999999999988884 11222233456667766
No 151
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.21 E-value=2.5e-10 Score=93.05 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=88.7
Q ss_pred HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C
Q 022248 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P 189 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~ 189 (300)
.++..++... +.++||||||++|+.+..+++. .+.+++.+|.++...+.|++.++..++. ++++++.+|+.+. +
T Consensus 35 ~lL~~l~~~~--~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 35 QLLQMLVRLT--RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEVIEGDALEVLP 111 (205)
T ss_dssp HHHHHHHHHH--T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEEEES-HHHHHH
T ss_pred HHHHHHHHhc--CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEEEEeccHhhHH
Confidence 3444444333 6789999999999999999973 4679999999999999999999999986 6999999998652 2
Q ss_pred -----CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 190 -----VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 190 -----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.+.++||+|+....- .+....+..+.++|+|||.+++-+
T Consensus 112 ~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred HHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcc
Confidence 124689999986532 356678889999999999998855
No 152
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.21 E-value=1.3e-10 Score=93.84 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=69.6
Q ss_pred CCCeEEEECCCCCh--hHHH--hHh---C---CCceEEEEcCCHHHHHHHHHHH--------------HH-----c--CC
Q 022248 125 KAKKVLEIGIGTGP--NLKY--YAA---D---TDVQVLGVDPNRKMEKYAQTAA--------------VA-----A--GL 173 (300)
Q Consensus 125 ~~~~vLDiGcG~G~--~~~~--l~~---~---~~~~~~giD~s~~~~~~a~~~~--------------~~-----~--~~ 173 (300)
+..+|+.+||++|. ++++ +.+ . ...+++|+|+|+.+++.|++-. +. . ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56799999999994 2222 233 1 2479999999999999998811 00 0 00
Q ss_pred C-----CCCEEEEecccCcCCCCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEe
Q 022248 174 P-----LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 174 ~-----~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~ 231 (300)
. ..+|.|...|+.+.+...+.||+|+|.+++.++... ..+++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0 147999999998844456899999999999999654 678999999999999999954
No 153
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2.4e-10 Score=104.67 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=85.4
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~ 199 (300)
.++.+|||+|||+|..+..+++. ...+++++|+++.+++.++++++..++. ++.++.+|+..++ ++ +.||+|+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~~~~-~~fD~Vl 325 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT--NIETKALDARKVHEKFA-EKFDKIL 325 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCCcccccchhc-ccCCEEE
Confidence 46689999999999999999874 3579999999999999999999988874 6999999997753 33 7899999
Q ss_pred Eccc------ccCccc----------------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248 200 GTLV------LCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 200 ~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
+.-- +.+-++ ...++.++.++|||||.++.++...
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 7421 111111 1357999999999999999876433
No 154
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.19 E-value=2.1e-10 Score=98.06 Aligned_cols=105 Identities=24% Similarity=0.281 Sum_probs=85.6
Q ss_pred cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
..+++.|||+|||+|.++...++....+|+++|.|.- ++.|.+.+..+++. +.++++.+.++++.+|.+.+|+|++-|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i-a~~a~~iv~~N~~~-~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI-ADFARKIVKDNGLE-DVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHH-HHHHHHHHHhcCcc-ceEEEeecceEEEecCccceeEEeehh
Confidence 3578999999999999999988877789999998764 59999999999986 579999999998876678999999865
Q ss_pred cccCc--c-cHHHHHHHHHHcccCCcEEEE
Q 022248 203 VLCSV--K-DVDMTLQEVRRVLKPGGIYLF 229 (300)
Q Consensus 203 ~l~~~--~-~~~~~l~~~~~~LkpgG~l~~ 229 (300)
.=+.+ + -.+.++-.=-++|+|||.++=
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 44433 2 234566667789999998763
No 155
>PLN02476 O-methyltransferase
Probab=99.18 E-value=5.6e-10 Score=94.54 Aligned_cols=103 Identities=13% Similarity=0.135 Sum_probs=85.2
Q ss_pred CCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-C----CCCccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V----SDASVD 196 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~----~~~~~D 196 (300)
++++|||||+++|+.+..++.. .+.+++.+|.+++..+.|++.++..|+. ++++++.+|+.+. + + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 6789999999999999999873 3568999999999999999999999986 6899999998552 2 1 246899
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+|+...-- .+...+++.+.++|+|||.+++-+
T Consensus 197 ~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDADK---RMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECCCH---HHHHHHHHHHHHhcCCCcEEEEec
Confidence 99986421 345678899999999999988744
No 156
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.17 E-value=1.1e-09 Score=100.16 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=95.2
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~ 199 (300)
.++.+|||+|||+|.++..+++. ..+++|+|+++.+++.|+++++..++ .+++|+.+|+.+. ++.++.||+|+
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~--~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI--ANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC--CceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 35579999999999999999864 45899999999999999999988886 4899999998653 23456799999
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL 279 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 279 (300)
+.--=. .-...+++.+.+ ++|++.++++.. + ..+.+ ++ +.|.+.||++..+
T Consensus 368 ~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc~-p---~tlar---------------------d~-~~l~~~gy~~~~~ 418 (431)
T TIGR00479 368 LDPPRK--GCAAEVLRTIIE-LKPERIVYVSCN-P---ATLAR---------------------DL-EFLCKEGYGITWV 418 (431)
T ss_pred ECcCCC--CCCHHHHHHHHh-cCCCEEEEEcCC-H---HHHHH---------------------HH-HHHHHCCeeEEEE
Confidence 742111 112445565554 889988777652 1 11110 22 3456789987777
Q ss_pred eeeccCCccccccee
Q 022248 280 GNAFLSNASLISPHV 294 (300)
Q Consensus 280 ~~~~~~~~~~~~~~~ 294 (300)
.-.+| |+.|+|+
T Consensus 419 ~~~Dm---FP~T~Hv 430 (431)
T TIGR00479 419 QPVDM---FPHTAHV 430 (431)
T ss_pred EEecc---CCCCCCC
Confidence 66655 4555554
No 157
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.17 E-value=4.8e-10 Score=94.66 Aligned_cols=135 Identities=22% Similarity=0.361 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHh--hhhHhHHHHHHHHHHHHHHhh-cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHH
Q 022248 90 DWYEEFYASVMN--SSMKSYEAEVAGYKSQLFDNL-RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (300)
Q Consensus 90 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~ 166 (300)
..|-.+|+.... ..+.+|.+.- .+.+.+++.. ...++.|||+|||+|.++...+.....+|++|+.| +|.++|++
T Consensus 140 ~~YF~~YG~L~~QQNMmQDYVRTg-TY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~ 217 (517)
T KOG1500|consen 140 SQYFQFYGYLSQQQNMMQDYVRTG-TYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARK 217 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHH
Confidence 345556654432 2335565532 2333444333 36789999999999999988887777899999974 59999999
Q ss_pred HHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc---cccCcccHHHHHHHHHHcccCCcEEEE
Q 022248 167 AAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL---VLCSVKDVDMTLQEVRRVLKPGGIYLF 229 (300)
Q Consensus 167 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~ 229 (300)
.++.+.+. +++.++.+.++++.++ +..|+||+-- .|.+ +...+..-..++.|||+|.++=
T Consensus 218 Lv~~N~~~-~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~N-ERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 218 LVASNNLA-DRITVIPGKIEDIELP-EKVDVIISEPMGYMLVN-ERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred HHhcCCcc-ceEEEccCccccccCc-hhccEEEeccchhhhhh-HHHHHHHHHHHhhcCCCCcccC
Confidence 99988775 7999999999998776 7799999732 2222 3334455567799999998864
No 158
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.16 E-value=8.7e-10 Score=90.91 Aligned_cols=149 Identities=21% Similarity=0.261 Sum_probs=108.0
Q ss_pred CeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC---CCCCCcccEEEEcc
Q 022248 127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSDASVDAVVGTL 202 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v~~~~ 202 (300)
..+||||||.|.++..+|. .+...++|||+....+..|.+++.+.++. |+.+++.|+..+ -+++++.|-|..++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~--Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK--NLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC--cEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 5899999999999999997 68889999999999999999999999985 999999999764 24556999999877
Q ss_pred cccCcccH--------HHHHHHHHHcccCCcEEEEEecccCCCchHHHH-HHHhhhh---hhh-hh--c-----CCcccc
Q 022248 203 VLCSVKDV--------DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKF-WQNVVDP---LQQ-IV--S-----DGCHLT 262 (300)
Q Consensus 203 ~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~---~~~-~~--~-----~~~~~~ 262 (300)
---|.... ..+++.+.++|+|||.|.+.+- ......+ +...... ... .. + ......
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD----~~~y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD----NEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPV 203 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec----CHHHHHHHHHHHHhcchhhhccccccccccccccCCCC
Confidence 54443221 4689999999999999999772 2233333 2222211 000 00 0 011233
Q ss_pred hHHHHHHHhcCCcEEEEee
Q 022248 263 RQTGNNISEAGFSSVELGN 281 (300)
Q Consensus 263 ~~~~~~l~~aGf~~v~~~~ 281 (300)
.++++.....|..+..+..
T Consensus 204 T~yE~k~~~~g~~i~~l~~ 222 (227)
T COG0220 204 TEYEQKFRRLGHPVYDLEF 222 (227)
T ss_pred cHHHHHHHhCCCceEEEEE
Confidence 5778888888888766654
No 159
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.15 E-value=6.8e-10 Score=90.12 Aligned_cols=105 Identities=8% Similarity=-0.011 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~ 203 (300)
++.+|||+|||+|.++..++.....+++++|.++.+++.++++++..++. ++.++.+|+... +...+.||+|++.=-
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~--~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG--NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC--cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 56799999999999998655445579999999999999999999888863 799999998653 223457999998543
Q ss_pred ccCcccHHHHHHHHHH--cccCCcEEEEEec
Q 022248 204 LCSVKDVDMTLQEVRR--VLKPGGIYLFVEH 232 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~--~LkpgG~l~~~~~ 232 (300)
.. -.-...+++.+.. +|+|+|.+++...
T Consensus 131 y~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 FR-KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CC-CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 11 1112344455544 3789988887653
No 160
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.15 E-value=3.1e-09 Score=95.06 Aligned_cols=137 Identities=14% Similarity=0.069 Sum_probs=97.2
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~ 203 (300)
++.+|||+|||+|.++..++.. +.+++|+|+++.+++.|+++++..++. +++|+.+|+++.. ...+.||+|++.=-
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~--~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD--NLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC--cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 4579999999999999999864 579999999999999999999988874 8999999987642 12246999987521
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF 283 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 283 (300)
. -.-...+++.+. .++|++.++++.... ++. +++..+ .||++.++.-.+
T Consensus 310 -r-~G~~~~~l~~l~-~~~p~~ivyvsc~p~----Tla---------------------RDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 310 -R-RGIGKELCDYLS-QMAPKFILYSSCNAQ----TMA---------------------KDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred -C-CCCcHHHHHHHH-hcCCCeEEEEEeCHH----HHH---------------------HHHHHh---cCceEEEEEEec
Confidence 1 011133445554 479999888877211 111 144433 699987777665
Q ss_pred cCCcccccceeeEEe
Q 022248 284 LSNASLISPHVYGIA 298 (300)
Q Consensus 284 ~~~~~~~~~~~~~~~ 298 (300)
| |+.|+|+.-++
T Consensus 359 m---FPqT~HvE~v~ 370 (374)
T TIGR02085 359 M---FPHTSHYEVLT 370 (374)
T ss_pred c---CCCCCcEEEEE
Confidence 5 66788876554
No 161
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.14 E-value=6.9e-10 Score=90.40 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=89.6
Q ss_pred HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC-C-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEe-cccCcC-
Q 022248 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ-AVGEAI- 188 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~d~~~~- 188 (300)
.++..++.. .++++|||||.+.|+.+..++.. + +.+++.+|.++++.+.|++++++.|+. +++..+. +|+.+.
T Consensus 49 ~~L~~L~~~--~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-~~i~~~~~gdal~~l 125 (219)
T COG4122 49 ALLRLLARL--SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-DRIELLLGGDALDVL 125 (219)
T ss_pred HHHHHHHHh--cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEEecCcHHHHH
Confidence 344444433 37789999999999999999873 2 579999999999999999999999997 5688888 476442
Q ss_pred C-CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 189 P-VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 189 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
. ...++||+|+.-..- .+...+++.+.++|+|||.+++-+.
T Consensus 126 ~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 126 SRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 2 456899999975422 3456789999999999999988553
No 162
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=7.7e-10 Score=87.62 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=86.5
Q ss_pred HHHHhhcCCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcC--------CCCCCEEEEeccc
Q 022248 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAG--------LPLTNFKFLQAVG 185 (300)
Q Consensus 117 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~--------~~~~~~~~~~~d~ 185 (300)
+.++.+..++.+.||+|+|+|+++..++. ..+...+|||.-++.++.+++++...- +...++.++++|.
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 33443446899999999999999988775 345556999999999999999886432 4456888999999
Q ss_pred CcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 186 EAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 186 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
...--+..+||.|.+......+ .+++...|+|||.+++.-
T Consensus 154 r~g~~e~a~YDaIhvGAaa~~~------pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 154 RKGYAEQAPYDAIHVGAAASEL------PQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cccCCccCCcceEEEccCcccc------HHHHHHhhccCCeEEEee
Confidence 8877678999999998554433 488999999999999954
No 163
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.11 E-value=3.2e-09 Score=94.04 Aligned_cols=118 Identities=19% Similarity=0.159 Sum_probs=93.7
Q ss_pred HHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCC
Q 022248 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSD 192 (300)
Q Consensus 117 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~ 192 (300)
..+.... .+++|||+-|=||.++.+.+.....+++.||+|..+++.|+++++-+++...++.|+++|+.+. .-..
T Consensus 210 ~~l~~~~-~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g 288 (393)
T COG1092 210 RALGELA-AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRG 288 (393)
T ss_pred HHHhhhc-cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcC
Confidence 3444444 3899999999999999998865445999999999999999999999999877899999999653 2344
Q ss_pred CcccEEEEc---------ccccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248 193 ASVDAVVGT---------LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA 235 (300)
Q Consensus 193 ~~~D~v~~~---------~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 235 (300)
.+||+|++. ....-..+...++..+.++|+|||.++++.....
T Consensus 289 ~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 289 EKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred CcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 699999972 1111124567789999999999999999886543
No 164
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.11 E-value=1.3e-09 Score=86.83 Aligned_cols=111 Identities=22% Similarity=0.190 Sum_probs=76.5
Q ss_pred cCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcC-CCCCCEEEEecccCc-C---CCCCCccc
Q 022248 123 RGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAG-LPLTNFKFLQAVGEA-I---PVSDASVD 196 (300)
Q Consensus 123 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~-~---~~~~~~~D 196 (300)
..++.+|||+|||+|..+..++.. ...+|+..|..+ .++.++.+++.++ ....++.+...+..+ . ......||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 357889999999999999988875 577999999998 9999999988765 112567777777643 1 12446899
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
+|++..+++.-.....+++-+.++|+|+|.+++....+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999999988888899999999999999877766444
No 165
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.11 E-value=1.8e-09 Score=98.07 Aligned_cols=101 Identities=25% Similarity=0.346 Sum_probs=75.6
Q ss_pred CCeEEEECCCCChhHHHhHhC-----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEE
Q 022248 126 AKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 200 (300)
+..|||||||+|.+....++. ...+|++||-++.++..++++++..++. ++|+++.+|++++..+ +.+|+||+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-TTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEEEEeCcccCCCCC-CceeEEEE
Confidence 578999999999998666543 3579999999999998888887888886 6899999999998765 58999997
Q ss_pred ccc--ccCcccHHHHHHHHHHcccCCcEEE
Q 022248 201 TLV--LCSVKDVDMTLQEVRRVLKPGGIYL 228 (300)
Q Consensus 201 ~~~--l~~~~~~~~~l~~~~~~LkpgG~l~ 228 (300)
=.. +-.-+-..++|....|.|||||.++
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 222 1111234567888999999998775
No 166
>PLN02672 methionine S-methyltransferase
Probab=99.11 E-value=1.6e-09 Score=106.72 Aligned_cols=106 Identities=25% Similarity=0.278 Sum_probs=78.6
Q ss_pred CCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCC--------------CCCEEEEecccCcCCC
Q 022248 126 AKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP--------------LTNFKFLQAVGEAIPV 190 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~--------------~~~~~~~~~d~~~~~~ 190 (300)
+.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|+++++.+++. .++++|+.+|+.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999999874 4579999999999999999999875431 1479999999865431
Q ss_pred C-CCcccEEEEcc--------------cccC------------c--------cc----HHHHHHHHHHcccCCcEEEEEe
Q 022248 191 S-DASVDAVVGTL--------------VLCS------------V--------KD----VDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 191 ~-~~~~D~v~~~~--------------~l~~------------~--------~~----~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
. ...||+|+++= +..+ . .| ...++.+..++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 23699999841 1100 0 11 1467788888999999888643
No 167
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=5.8e-09 Score=85.96 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=86.7
Q ss_pred CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-----CCCCCCcccE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-----IPVSDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~D~ 197 (300)
..+..|||+|||+|..+..++. -+...+++||.|+.++..|.++++..++. ..+.++.-+++. .+...+.+|+
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-GRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-CceEEEecccccccccccccccCceeE
Confidence 3456899999999999998886 35789999999999999999999998885 577777544432 2456789999
Q ss_pred EEEcc--cc------------------------cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHH
Q 022248 198 VVGTL--VL------------------------CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW 244 (300)
Q Consensus 198 v~~~~--~l------------------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 244 (300)
++++= +. ........++.-..|.|+|||.+.+..........+...|
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIW 298 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHH
Confidence 99852 10 0001123456778899999999998765444444444443
No 168
>PHA03412 putative methyltransferase; Provisional
Probab=99.08 E-value=5.8e-10 Score=91.49 Aligned_cols=94 Identities=11% Similarity=0.130 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCChhHHHhHhC----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEE
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 200 (300)
.+.+|||+|||+|.++..+++. ...+++++|+++.+++.|+++. .++.++.+|+...++ +++||+|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~~~~-~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------PEATWINADALTTEF-DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhcccc-cCCccEEEE
Confidence 4679999999999999988763 3568999999999999999774 367899999977664 468999998
Q ss_pred cccccCc--c----------cHHHHHHHHHHcccCCcE
Q 022248 201 TLVLCSV--K----------DVDMTLQEVRRVLKPGGI 226 (300)
Q Consensus 201 ~~~l~~~--~----------~~~~~l~~~~~~LkpgG~ 226 (300)
+=-.... . -...++..+.+++++|+.
T Consensus 121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 5322211 1 134578888886666664
No 169
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.07 E-value=3.7e-09 Score=91.00 Aligned_cols=130 Identities=23% Similarity=0.307 Sum_probs=102.6
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-ccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~v~~~~ 202 (300)
.++..|||--||||.++.... ..+..++|+|++..|++-|+.+++..++. ...+... |+..+|++++++|.|++.-
T Consensus 196 ~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~i~--~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYGIE--DYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred ccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhCcC--ceeEEEecccccCCCCCCccceEEecC
Confidence 577899999999999988865 57889999999999999999999998864 5655655 9999999988999999731
Q ss_pred -----cccCccc----HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcC
Q 022248 203 -----VLCSVKD----VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG 273 (300)
Q Consensus 203 -----~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 273 (300)
.-..... ..++++.+.++||+||++++..+. .....+.+.|
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~------------------------------~~~~~~~~~~ 322 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR------------------------------DPRHELEELG 322 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC------------------------------cchhhHhhcC
Confidence 1001111 357899999999999999997640 2234566899
Q ss_pred CcEEEEeeeccCC
Q 022248 274 FSSVELGNAFLSN 286 (300)
Q Consensus 274 f~~v~~~~~~~~~ 286 (300)
|+++.....+.+.
T Consensus 323 f~v~~~~~~~~H~ 335 (347)
T COG1041 323 FKVLGRFTMRVHG 335 (347)
T ss_pred ceEEEEEEEeecC
Confidence 9998888777664
No 170
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.07 E-value=3e-09 Score=89.63 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=80.3
Q ss_pred CCCeEEEECCCCCh--hHHH--hHhC------CCceEEEEcCCHHHHHHHHHHHHH-----cCCC---------------
Q 022248 125 KAKKVLEIGIGTGP--NLKY--YAAD------TDVQVLGVDPNRKMEKYAQTAAVA-----AGLP--------------- 174 (300)
Q Consensus 125 ~~~~vLDiGcG~G~--~~~~--l~~~------~~~~~~giD~s~~~~~~a~~~~~~-----~~~~--------------- 174 (300)
...+|+-+||++|. ++++ +.+. ...+++|+|++..+++.|++-.=. .+++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999994 3333 3332 257999999999999999872210 1111
Q ss_pred -------CCCEEEEecccCcCCCCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEe
Q 022248 175 -------LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 175 -------~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~ 231 (300)
...|.|...|+...++..+.||+|+|.+|+.++... ..++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 136778888887665345789999999999999644 678999999999999999944
No 171
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.06 E-value=8e-10 Score=94.34 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=79.6
Q ss_pred CCCeEEEECCCCCh--hHHHh--HhC-----CCceEEEEcCCHHHHHHHHHHH------------------HH-----cC
Q 022248 125 KAKKVLEIGIGTGP--NLKYY--AAD-----TDVQVLGVDPNRKMEKYAQTAA------------------VA-----AG 172 (300)
Q Consensus 125 ~~~~vLDiGcG~G~--~~~~l--~~~-----~~~~~~giD~s~~~~~~a~~~~------------------~~-----~~ 172 (300)
+..+|+..||++|. +++++ .+. ...+++|+|+|+.+++.|++.. .. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999994 33333 231 2468999999999999999841 00 00
Q ss_pred ---CC---CCCEEEEecccCcCCCC-CCcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEe
Q 022248 173 ---LP---LTNFKFLQAVGEAIPVS-DASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 173 ---~~---~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+. ...|.|...|+.+.+++ .+.||+|+|.+++.|+. ....+++++++.|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 00 14678889998775443 57899999999999995 45789999999999999887743
No 172
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.05 E-value=2.6e-09 Score=89.39 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=88.0
Q ss_pred HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C
Q 022248 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P 189 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~ 189 (300)
.++..++... +.++|||||+++|+.+..++.. .+.+++.+|.++...+.|++.++..|+. ++++++.+++.+. +
T Consensus 69 ~lL~~l~~~~--~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 69 QFLNMLLKLI--NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALPVLD 145 (247)
T ss_pred HHHHHHHHHh--CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeccHHHHHH
Confidence 3444444333 6789999999999999999863 4679999999999999999999999986 7999999998553 2
Q ss_pred C------CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 190 V------SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 190 ~------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
- ..++||+|+...-- ......++.+.+.|+|||.+++-+
T Consensus 146 ~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 146 QMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcC
Confidence 1 13689999986431 234567888899999999987743
No 173
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=99.02 E-value=1.2e-09 Score=96.18 Aligned_cols=206 Identities=20% Similarity=0.232 Sum_probs=134.1
Q ss_pred CChHHHHhhcCCCCchhHHHHHHHHHhhhh-HhHHHHHHHHH----HHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCc
Q 022248 75 SDSMAMLNRLHPPRPDWYEEFYASVMNSSM-KSYEAEVAGYK----SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV 149 (300)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 149 (300)
.+..+.+..+.....+.|...|...+.-.. ..+......+. -.++..-..++..++|+|||.|....+++.....
T Consensus 55 ~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~ 134 (364)
T KOG1269|consen 55 EDLPEQIAKYYNNSTDLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKA 134 (364)
T ss_pred cccchHHHHHhcccchhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccC
Confidence 444555666555555555555554432221 11111111111 1122222246668999999999999999988888
Q ss_pred eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEE
Q 022248 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF 229 (300)
Q Consensus 150 ~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 229 (300)
.++|+|.++..+.++.......++. .+..+..+|+...|++++.||.+.+..+.+|.++...+++|+.|+++|||+++.
T Consensus 135 ~~~Gl~~n~~e~~~~~~~~~~~~l~-~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 135 GVVGLDNNAYEAFRANELAKKAYLD-NKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred CccCCCcCHHHHHHHHHHHHHHHhh-hhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence 9999999999999998888777775 355568889999999999999999999999999999999999999999999999
Q ss_pred EecccCCCchHHH-HHHHhhhhhhhhhcC-CcccchHHHHHHHhcCCcEEEEee
Q 022248 230 VEHVAAKDGTFLK-FWQNVVDPLQQIVSD-GCHLTRQTGNNISEAGFSSVELGN 281 (300)
Q Consensus 230 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~aGf~~v~~~~ 281 (300)
.++.......-.. ........+....+. .........+++...||+.+..+.
T Consensus 214 ~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~ 267 (364)
T KOG1269|consen 214 KEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEK 267 (364)
T ss_pred HHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchhhhhcc
Confidence 8765432110000 000000000000000 011223567788889998777553
No 174
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=7.2e-09 Score=81.21 Aligned_cols=72 Identities=25% Similarity=0.204 Sum_probs=61.7
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
-.+..|+|+|||||.++...+-.....|+++|+++++++.++++..+.. .++.|+++|+.+.. ..+|.++++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~~---~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDFR---GKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhcC---CccceEEEC
Confidence 3677899999999999988876666799999999999999999998833 58999999998875 568888874
No 175
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.98 E-value=4.5e-09 Score=89.54 Aligned_cols=110 Identities=25% Similarity=0.307 Sum_probs=82.6
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C--CCCCcccEEEEc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--VSDASVDAVVGT 201 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~v~~~ 201 (300)
++++|||+-|=+|.++.+.+.....+++.||.|..+++.+++++.-+++...+++|+..|+.+. . -..++||+||+.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 6789999999999999988765556899999999999999999999998777999999998652 1 134689999972
Q ss_pred ---ccccC---cccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 202 ---LVLCS---VKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 202 ---~~l~~---~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
+.-.. ..+...++..+.++|+|||.|+++....
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 11111 1355678899999999999998877544
No 176
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.97 E-value=5.2e-08 Score=82.08 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=102.2
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHH---cC-------------------------C---
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA---AG-------------------------L--- 173 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~---~~-------------------------~--- 173 (300)
...+||--|||-|+++..++.. +..+.|.|.|--|+-...-.+.. .+ +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 4679999999999999999975 77999999999987655443221 00 0
Q ss_pred -------CCCCEEEEecccCcCCCCC---CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHH
Q 022248 174 -------PLTNFKFLQAVGEAIPVSD---ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKF 243 (300)
Q Consensus 174 -------~~~~~~~~~~d~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 243 (300)
...++....+|+.++-..+ +.||+|+..+-+...++....++.|.++|||||+.+=..+......
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~----- 209 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFE----- 209 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCC-----
Confidence 0125666777776654344 7999999999888889999999999999999996665543221100
Q ss_pred HHHhhhhhh-hhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248 244 WQNVVDPLQ-QIVSDGCHLTRQTGNNISEAGFSSVELGN 281 (300)
Q Consensus 244 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 281 (300)
+.. .....--.+.+|+..+++..||+++..+.
T Consensus 210 ------~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 ------PMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ------CCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 00000234668999999999999877654
No 177
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.97 E-value=1.6e-08 Score=81.66 Aligned_cols=105 Identities=8% Similarity=-0.005 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-C-CCC-cccEEEE
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V-SDA-SVDAVVG 200 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~-~~~-~~D~v~~ 200 (300)
++.+|||++||+|.++..++.+....++++|.++.+++.++++++..++. .+++++.+|+... . + ..+ .||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG-EQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 57899999999999999998876668999999999999999999888864 4789999998542 2 1 123 3677665
Q ss_pred cccccCcccHHHHHHHHH--HcccCCcEEEEEe
Q 022248 201 TLVLCSVKDVDMTLQEVR--RVLKPGGIYLFVE 231 (300)
Q Consensus 201 ~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~ 231 (300)
. -.+.......++..+. .+|+++|.+++-.
T Consensus 128 D-PPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 128 D-PPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred C-cCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 2 2221122334444443 4678888766644
No 178
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.96 E-value=1.3e-08 Score=90.65 Aligned_cols=135 Identities=15% Similarity=0.045 Sum_probs=91.9
Q ss_pred CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CC------------
Q 022248 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VS------------ 191 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~------------ 191 (300)
+.+|||++||+|.++..+++. ..+++|+|+++.+++.|+++++..++. +++|+.+|+.+. + +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~--~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID--NVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHhhccccccccccc
Confidence 357999999999999988865 458999999999999999999988874 899999998663 1 10
Q ss_pred --CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHH
Q 022248 192 --DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNI 269 (300)
Q Consensus 192 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (300)
...||+|+..=- . ..-...+++.+. +|++.++++... .++ . .++..+.
T Consensus 284 ~~~~~~D~v~lDPP-R-~G~~~~~l~~l~---~~~~ivyvSC~p----~tl---a------------------rDl~~L~ 333 (362)
T PRK05031 284 LKSYNFSTIFVDPP-R-AGLDDETLKLVQ---AYERILYISCNP----ETL---C------------------ENLETLS 333 (362)
T ss_pred ccCCCCCEEEECCC-C-CCCcHHHHHHHH---ccCCEEEEEeCH----HHH---H------------------HHHHHHc
Confidence 125899987311 1 001123344443 478887777632 111 1 1444433
Q ss_pred HhcCCcEEEEeeeccCCcccccceeeEEe
Q 022248 270 SEAGFSSVELGNAFLSNASLISPHVYGIA 298 (300)
Q Consensus 270 ~~aGf~~v~~~~~~~~~~~~~~~~~~~~~ 298 (300)
+ ||++.++.-.+| |+.|+|+.-++
T Consensus 334 -~-gY~l~~v~~~Dm---FPqT~HvE~v~ 357 (362)
T PRK05031 334 -Q-THKVERFALFDQ---FPYTHHMECGV 357 (362)
T ss_pred -C-CcEEEEEEEccc---CCCCCcEEEEE
Confidence 3 898777776655 67788876554
No 179
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.96 E-value=3.9e-09 Score=90.55 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=105.2
Q ss_pred CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccccc
Q 022248 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~ 205 (300)
-...+|+|.|.|..+..+.. ...++-+++.....+-.++..+. . .|+.+.+|..+- .| .-|+|++-+++|
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~-----gV~~v~gdmfq~-~P--~~daI~mkWiLh 247 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-P-----GVEHVAGDMFQD-TP--KGDAIWMKWILH 247 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-C-----Ccceeccccccc-CC--CcCeEEEEeecc
Confidence 47899999999999999987 44468888888877777766653 2 367777777554 33 345999999999
Q ss_pred CcccH--HHHHHHHHHcccCCcEEEEEecccCCCchH----HHHHHHh-hhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248 206 SVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTF----LKFWQNV-VDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278 (300)
Q Consensus 206 ~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 278 (300)
|+.|. .++|++|+..|+|||.+++.+.+.+..... ..+.... ...+.....+.-.+..+++.++.++||...+
T Consensus 248 dwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~ 327 (342)
T KOG3178|consen 248 DWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCM 327 (342)
T ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeE
Confidence 99765 589999999999999999999854431111 0111000 0011111223456778999999999999888
Q ss_pred EeeeccC
Q 022248 279 LGNAFLS 285 (300)
Q Consensus 279 ~~~~~~~ 285 (300)
+......
T Consensus 328 ~~~~~~~ 334 (342)
T KOG3178|consen 328 VALTAYS 334 (342)
T ss_pred EEeccCc
Confidence 8755443
No 180
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.95 E-value=1.3e-08 Score=94.30 Aligned_cols=106 Identities=23% Similarity=0.260 Sum_probs=88.2
Q ss_pred CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVG 200 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~ 200 (300)
.....+||||||.|.++..+|. .+...++|+|+....+..+.+++...++. |+.++..|+..+ -++++++|.|+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~--N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT--NFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHhcCcccccEEEE
Confidence 3567899999999999999987 68889999999999999999888888874 898888887543 267889999999
Q ss_pred cccccCcccH--------HHHHHHHHHcccCCcEEEEEe
Q 022248 201 TLVLCSVKDV--------DMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 201 ~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~ 231 (300)
++---|.... ..+++.++++|||||.+.+.+
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 7755443211 468999999999999999976
No 181
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.94 E-value=9e-09 Score=82.75 Aligned_cols=119 Identities=21% Similarity=0.247 Sum_probs=89.9
Q ss_pred CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC---CCCcccEEEEcc
Q 022248 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV---SDASVDAVVGTL 202 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~~ 202 (300)
..++|||||=+...... ...-..|+.||+++. .-.+.+.|+.+.|. +++.||+|.++.
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~-----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ-----------------HPGILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCCC-----------------CCCceeeccccCCCCCCcccceeEEEEEE
Confidence 47999999975543322 234457999999873 23457788877765 468999999999
Q ss_pred cccCcccHH---HHHHHHHHcccCCcE-----EEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCC
Q 022248 203 VLCSVKDVD---MTLQEVRRVLKPGGI-----YLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGF 274 (300)
Q Consensus 203 ~l~~~~~~~---~~l~~~~~~LkpgG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 274 (300)
+|.++|++. +++.++++.|+|+|. |+++-+.+-- ....+.+.+.|.++|+..||
T Consensus 113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv------------------~NSRy~~~~~l~~im~~LGf 174 (219)
T PF11968_consen 113 VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV------------------TNSRYMTEERLREIMESLGF 174 (219)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh------------------hcccccCHHHHHHHHHhCCc
Confidence 999999875 589999999999999 8887643311 11235566789999999999
Q ss_pred cEEEEee
Q 022248 275 SSVELGN 281 (300)
Q Consensus 275 ~~v~~~~ 281 (300)
..++.+.
T Consensus 175 ~~~~~~~ 181 (219)
T PF11968_consen 175 TRVKYKK 181 (219)
T ss_pred EEEEEEe
Confidence 9988864
No 182
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.94 E-value=3e-08 Score=86.00 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=90.8
Q ss_pred CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHc-CCCCCCEEEEe-cccCcC----CCCCCcccE
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQ-AVGEAI----PVSDASVDA 197 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~~~-~d~~~~----~~~~~~~D~ 197 (300)
...++||||||+|.....++. ..+.+++|+|+++.+++.|+++++.. ++. .++.+.. .+...+ ..+++.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEEccchhhhhhcccccCCceEE
Confidence 468999999999966655554 46789999999999999999999988 675 5777754 333222 124678999
Q ss_pred EEEcccccCcccH-----HHHHHH----------------HHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhc
Q 022248 198 VVGTLVLCSVKDV-----DMTLQE----------------VRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVS 256 (300)
Q Consensus 198 v~~~~~l~~~~~~-----~~~l~~----------------~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (300)
|+|+=-++.-... ..-.+. ..+++.+||.+-|+.....+. .....+... +... -
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS---~~~~~~~gw-ftsm-v 267 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES---KAFAKQVLW-FTSL-V 267 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH---HHHHhhCcE-EEEE-e
Confidence 9997433321111 111112 223345677766655322111 111111100 0000 0
Q ss_pred CCcccchHHHHHHHhcCCcEEEEeee
Q 022248 257 DGCHLTRQTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 257 ~~~~~~~~~~~~l~~aGf~~v~~~~~ 282 (300)
....+.+.+.+.|++.|...+.+.++
T Consensus 268 ~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 268 SKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred eccCCHHHHHHHHHHcCCceEEEEEE
Confidence 11235679999999999976666544
No 183
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.88 E-value=6.6e-08 Score=77.38 Aligned_cols=99 Identities=32% Similarity=0.392 Sum_probs=82.1
Q ss_pred CCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
..+++|||+|.|.-+..++- .+..+++.+|....-+...+......++. +++++.+.+++ +...+.||+|++..
T Consensus 49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~-~~~~~~fd~v~aRA-- 123 (184)
T PF02527_consen 49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS--NVEVINGRAEE-PEYRESFDVVTARA-- 123 (184)
T ss_dssp CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S--SEEEEES-HHH-TTTTT-EEEEEEES--
T ss_pred CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC--CEEEEEeeecc-cccCCCccEEEeeh--
Confidence 33899999999998888765 57889999999999999999999999985 89999999998 44568999999954
Q ss_pred cCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 205 CSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+.....++.-+...|++||.+++.-
T Consensus 124 --v~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 124 --VAPLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SSSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --hcCHHHHHHHHHHhcCCCCEEEEEc
Confidence 4566778899999999999999865
No 184
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.88 E-value=9.3e-08 Score=84.87 Aligned_cols=135 Identities=13% Similarity=-0.016 Sum_probs=90.2
Q ss_pred CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-------C---C---
Q 022248 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-------V---S--- 191 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-------~---~--- 191 (300)
+.+|||++||+|.++..+++.. .+++|+|+++.+++.|+++++..++. ++.|+.+|+++. + + .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID--NVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHhhccccccccccc
Confidence 3579999999999999988754 49999999999999999999988874 799999998763 1 1 0
Q ss_pred --CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHH
Q 022248 192 --DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNI 269 (300)
Q Consensus 192 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (300)
...||+|+..=- . ..-...+++.+ ++|++.+++++... .+. .++..+.
T Consensus 275 ~~~~~~d~v~lDPP-R-~G~~~~~l~~l---~~~~~ivYvsC~p~----tla---------------------RDl~~L~ 324 (353)
T TIGR02143 275 LKSYNCSTIFVDPP-R-AGLDPDTCKLV---QAYERILYISCNPE----TLK---------------------ANLEQLS 324 (353)
T ss_pred cccCCCCEEEECCC-C-CCCcHHHHHHH---HcCCcEEEEEcCHH----HHH---------------------HHHHHHh
Confidence 123798887311 0 00112333444 34788888876311 111 1444433
Q ss_pred HhcCCcEEEEeeeccCCcccccceeeEEe
Q 022248 270 SEAGFSSVELGNAFLSNASLISPHVYGIA 298 (300)
Q Consensus 270 ~~aGf~~v~~~~~~~~~~~~~~~~~~~~~ 298 (300)
.||++..+.-.+| |+.|+|+.-++
T Consensus 325 --~~Y~l~~v~~~Dm---FP~T~HvE~v~ 348 (353)
T TIGR02143 325 --ETHRVERFALFDQ---FPYTHHMECGV 348 (353)
T ss_pred --cCcEEEEEEEccc---CCCCCcEEEEE
Confidence 3488777766555 67788876554
No 185
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.87 E-value=1.4e-08 Score=86.37 Aligned_cols=73 Identities=19% Similarity=0.334 Sum_probs=61.7
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++.. . ++++++.+|+.+++++ .||.|+++.-
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~--~~v~ii~~D~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--A--GNVEIIEGDALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--C--CCEEEEEeccccCCch--hceEEEEcCC
Confidence 46789999999999999999976 56999999999999999988754 1 4899999999888765 4899988643
No 186
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.86 E-value=1.2e-09 Score=97.56 Aligned_cols=101 Identities=22% Similarity=0.350 Sum_probs=71.2
Q ss_pred CeEEEECCCCChhHHHhHhCCCceEEEE---cCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 127 KKVLEIGIGTGPNLKYYAADTDVQVLGV---DPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~~~~~~~gi---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
..+||+|||.|.++.+|.+. +.....+ |..+.+++.|.++ |+. ..+-..-...+||+++.||+|.|..+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvp---a~~~~~~s~rLPfp~~~fDmvHcsrc 190 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVP---AMIGVLGSQRLPFPSNAFDMVHCSRC 190 (506)
T ss_pred EEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccc---hhhhhhccccccCCccchhhhhcccc
Confidence 56999999999999999864 3333332 4445566665543 432 11111223679999999999999988
Q ss_pred ccCcccH-HHHHHHHHHcccCCcEEEEEecccC
Q 022248 204 LCSVKDV-DMTLQEVRRVLKPGGIYLFVEHVAA 235 (300)
Q Consensus 204 l~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~~ 235 (300)
+..+... ..+|-++.|+|+|||+++++.+...
T Consensus 191 ~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 191 LIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cccchhcccceeehhhhhhccCceEEecCCccc
Confidence 8766433 4578999999999999999876443
No 187
>PLN02823 spermine synthase
Probab=98.84 E-value=4.5e-08 Score=85.72 Aligned_cols=106 Identities=19% Similarity=0.266 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcC-CCCCCcccEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PVSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D~v~ 199 (300)
+.+++||.||+|.|..+..+++. ...+++.+|+++.+++.+++.+... .+..++++++.+|+... ...+++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999999988874 3568999999999999999987532 23346899999998663 33457899999
Q ss_pred EcccccCc----cc---HHHHHH-HHHHcccCCcEEEEE
Q 022248 200 GTLVLCSV----KD---VDMTLQ-EVRRVLKPGGIYLFV 230 (300)
Q Consensus 200 ~~~~l~~~----~~---~~~~l~-~~~~~LkpgG~l~~~ 230 (300)
+... ... +. -.++++ .+.+.|+|||++++-
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8632 111 10 235677 899999999998763
No 188
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.83 E-value=1.4e-08 Score=86.93 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=59.0
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||||||+|.++..+++... +++|+|+++.+++.+++++.. ++++++.+|+.++++++-.+|.|+++
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCHHHcCcceEEEe
Confidence 4678999999999999999997644 999999999999999886532 48999999999887653225777765
No 189
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=8.6e-07 Score=68.95 Aligned_cols=129 Identities=22% Similarity=0.264 Sum_probs=92.3
Q ss_pred CCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
...-+||||||+|..+..|+. .++..+.++|+++.+.+..++.++.++. +++.+++|+...- ..++.|+++.+-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~~l-~~~~VDvLvfNP 118 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLSGL-RNESVDVLVFNP 118 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHhhh-ccCCccEEEECC
Confidence 367899999999999988876 3667899999999999999888887764 5778888875532 338899988642
Q ss_pred --ccc---Cc------------cc----HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCccc
Q 022248 203 --VLC---SV------------KD----VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHL 261 (300)
Q Consensus 203 --~l~---~~------------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (300)
+.- .+ .+ .+.++..+-.+|.|.|+++++......
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~------------------------- 173 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK------------------------- 173 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC-------------------------
Confidence 111 11 11 245566677888899999997743221
Q ss_pred chHHHHHHHhcCCcEEEEeee
Q 022248 262 TRQTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 262 ~~~~~~~l~~aGf~~v~~~~~ 282 (300)
++++.+.++.-||........
T Consensus 174 p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 174 PKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred HHHHHHHHhhcccceeEEEEE
Confidence 237778888888885555433
No 190
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.83 E-value=1.6e-07 Score=77.67 Aligned_cols=136 Identities=16% Similarity=0.085 Sum_probs=79.0
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHH-HHHHHHHcCCCCCCEE-EEecccCc-----CCCCCCccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY-AQTAAVAAGLPLTNFK-FLQAVGEA-----IPVSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~-a~~~~~~~~~~~~~~~-~~~~d~~~-----~~~~~~~~D 196 (300)
.++.+|||+|||+|.++..+++....+++++|+++.|+.. .++. +++. +...|+.. .+..-..+|
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~--------~~v~~~~~~ni~~~~~~~~~~d~~~~D 145 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD--------ERVKVLERTNIRYVTPADIFPDFATFD 145 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC--------CCeeEeecCCcccCCHhHcCCCceeee
Confidence 4678999999999999999998656689999999987765 2221 1222 23334332 221223677
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhc--CCcccchHHHHHHHhcCC
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVS--DGCHLTRQTGNNISEAGF 274 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~aGf 274 (300)
+++++..+ .+..+.+.|+| |.+++.--..-+-+. ......+-... ......+++...+.+.||
T Consensus 146 vsfiS~~~--------~l~~i~~~l~~-~~~~~L~KPqFE~~~------~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~ 210 (228)
T TIGR00478 146 VSFISLIS--------ILPELDLLLNP-NDLTLLFKPQFEAGR------EKKNKKGVVRDKEAIALALHKVIDKGESPDF 210 (228)
T ss_pred EEEeehHh--------HHHHHHHHhCc-CeEEEEcChHhhhcH------hhcCcCCeecCHHHHHHHHHHHHHHHHcCCC
Confidence 66654433 47889999999 777765421111110 00000000000 001122466777788999
Q ss_pred cEEEEeee
Q 022248 275 SSVELGNA 282 (300)
Q Consensus 275 ~~v~~~~~ 282 (300)
+.+.+...
T Consensus 211 ~~~~~~~s 218 (228)
T TIGR00478 211 QEKKIIFS 218 (228)
T ss_pred eEeeEEEC
Confidence 98777644
No 191
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.82 E-value=5.2e-09 Score=87.06 Aligned_cols=106 Identities=24% Similarity=0.328 Sum_probs=85.2
Q ss_pred HHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (300)
Q Consensus 116 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 195 (300)
.++++... .+..++|+|||.|.++.. .+...++|.|++...+..+++. .......+|+..+|+.+.+|
T Consensus 37 ~qfl~~~~-~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l~~p~~~~s~ 104 (293)
T KOG1331|consen 37 RQFLDSQP-TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADALKLPFREESF 104 (293)
T ss_pred HHHHhccC-CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC--------CCceeehhhhhcCCCCCCcc
Confidence 34444443 588999999999976532 4667899999999988888764 12267889999999999999
Q ss_pred cEEEEcccccCccc---HHHHHHHHHHcccCCcEEEEEecc
Q 022248 196 DAVVGTLVLCSVKD---VDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 196 D~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
|.++...++||+.. ...+++++.|.|+|||..++..+.
T Consensus 105 d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 105 DAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 99999999999953 357899999999999998886543
No 192
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.81 E-value=1e-07 Score=76.34 Aligned_cols=105 Identities=30% Similarity=0.402 Sum_probs=75.2
Q ss_pred CCCCeEEEECCCCChhHHHhHh-CCCce---------EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQ---------VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~---------~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 193 (300)
.++..|||.-||+|.+..+.+. ..... ++|.|+++.+++.|+++++..++. ..+.+...|+..+++.++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~-~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE-DYIDFIQWDARELPLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-GGEEEEE--GGGGGGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-CceEEEecchhhcccccC
Confidence 4678999999999999877654 23333 899999999999999999999885 578999999999998788
Q ss_pred cccEEEEcccccC-cc---c----HHHHHHHHHHcccCCcEEEE
Q 022248 194 SVDAVVGTLVLCS-VK---D----VDMTLQEVRRVLKPGGIYLF 229 (300)
Q Consensus 194 ~~D~v~~~~~l~~-~~---~----~~~~l~~~~~~LkpgG~l~~ 229 (300)
.+|.|+++--.-. +. + ...+++++.++|++..++++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 9999998531111 01 1 14568999999999434333
No 193
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.79 E-value=3.9e-08 Score=84.76 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=62.2
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+.. ++++++.+|+.+.++ ..||.|+++
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~-~~v~ii~~Dal~~~~--~~~d~VvaN 108 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLA-SKLEVIEGDALKTEF--PYFDVCVAN 108 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECCHhhhcc--cccCEEEec
Confidence 46789999999999999999874 568999999999999999988765532 589999999987765 368988864
No 194
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.78 E-value=1.3e-07 Score=72.48 Aligned_cols=104 Identities=15% Similarity=0.100 Sum_probs=87.2
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CCCCccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D 196 (300)
..+.-|||+|.|+|.++.++++. ....+++++++++.+....+.. +.+.++.+|+..+. +.+..||
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------p~~~ii~gda~~l~~~l~e~~gq~~D 119 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------PGVNIINGDAFDLRTTLGEHKGQFFD 119 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------CCccccccchhhHHHHHhhcCCCeee
Confidence 45679999999999999999874 5568999999999999988874 56778999997764 6778999
Q ss_pred EEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEeccc
Q 022248 197 AVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 197 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
.|+|..-+-.++-. .++++.+...|.+||.++.....+
T Consensus 120 ~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 120 SVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred eEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 99998777776533 578999999999999999988653
No 195
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.76 E-value=1.5e-06 Score=75.50 Aligned_cols=117 Identities=10% Similarity=0.068 Sum_probs=80.3
Q ss_pred HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC-----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc
Q 022248 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~ 187 (300)
.....+...+ .++..|+|+|||+|.-+..|++. ....++++|+|..+++.+.+.+....++.-.+.-+++|..+
T Consensus 65 ~~~~~Ia~~i-~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 65 KHSSDIAASI-PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 3344444444 35668999999999876666541 35789999999999999999987443321233447888755
Q ss_pred C----CC--CCCcccEEEEc-ccccCcccH--HHHHHHHHH-cccCCcEEEEE
Q 022248 188 I----PV--SDASVDAVVGT-LVLCSVKDV--DMTLQEVRR-VLKPGGIYLFV 230 (300)
Q Consensus 188 ~----~~--~~~~~D~v~~~-~~l~~~~~~--~~~l~~~~~-~LkpgG~l~~~ 230 (300)
. +- ..+...+++.. .++.+++.. ..+|+++++ .|+|||.|++.
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 2 21 12345666654 477777544 468999999 99999998884
No 196
>PRK00536 speE spermidine synthase; Provisional
Probab=98.76 E-value=5e-07 Score=76.14 Aligned_cols=99 Identities=14% Similarity=0.008 Sum_probs=77.3
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
+.+++||=||.|.|..++.+++.+. +++-||+++.+++.+++.+... ++..++++++.. +. ....+.||+||+.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEc
Confidence 5679999999999999999998764 9999999999999999965432 345578887752 11 1123689999986
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.. ....+++.+++.|+|||.++.-.
T Consensus 147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 42 23567799999999999998844
No 197
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.75 E-value=1e-07 Score=77.14 Aligned_cols=99 Identities=20% Similarity=0.205 Sum_probs=73.8
Q ss_pred CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
.++.+|||+.||.|.++..+++ .....|+++|+++.+++.++++++.+++. .++..+.+|+.++.. .+.+|-|++..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE-NRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T-TTEEEEES-GGG----TT-EEEEEE--
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC-CeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 4788999999999999999997 45668999999999999999999999986 689999999988764 78999999865
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEE
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYL 228 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~ 228 (300)
-- ....++..+.+++++||.+-
T Consensus 178 p~----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PE----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TS----SGGGGHHHHHHHEEEEEEEE
T ss_pred hH----HHHHHHHHHHHHhcCCcEEE
Confidence 22 22346788889999998764
No 198
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.73 E-value=1.8e-07 Score=74.62 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=93.4
Q ss_pred hcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEE
Q 022248 122 LRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVV 199 (300)
Q Consensus 122 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~ 199 (300)
+..++.+||.||-|.|.....+.+.+..+-+.|+..+.+++..+...... .++|....+-.++. .++++.||-|.
T Consensus 98 i~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e---k~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 98 ISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE---KENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred HhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc---ccceEEEecchHhhhccccccCcceeE
Confidence 33688999999999999888888777778899999999998877653222 35888888877764 36789999999
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHH
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKF 243 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 243 (300)
....-.+..|...+.+.+.|+|||+|++-+..-....+..+...
T Consensus 175 yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~v 218 (271)
T KOG1709|consen 175 YDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYDV 218 (271)
T ss_pred eechhhHHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhhh
Confidence 87665667888889999999999999998877655544443333
No 199
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.71 E-value=9.6e-07 Score=71.93 Aligned_cols=131 Identities=23% Similarity=0.241 Sum_probs=100.5
Q ss_pred CCeEEEECCCCChhHHHhH-hCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 126 AKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~-~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
+.+++|||+|.|.-+..++ -.++.+++-+|....-+...+....+.++. |++++.+.+++..-....||+|++..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~--nv~i~~~RaE~~~~~~~~~D~vtsRA-- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE--NVEIVHGRAEEFGQEKKQYDVVTSRA-- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC--CeEEehhhHhhcccccccCcEEEeeh--
Confidence 6899999999999888876 367788999999999999999999998884 89999999999863211199999854
Q ss_pred cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeecc
Q 022248 205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFL 284 (300)
Q Consensus 205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 284 (300)
+.+...++.-+..++|+||.+++.-..... .. ..+.++.....||..+.+.....
T Consensus 144 --va~L~~l~e~~~pllk~~g~~~~~k~~~~~---------~e--------------~~e~~~a~~~~~~~~~~~~~~~~ 198 (215)
T COG0357 144 --VASLNVLLELCLPLLKVGGGFLAYKGLAGK---------DE--------------LPEAEKAILPLGGQVEKVFSLTV 198 (215)
T ss_pred --ccchHHHHHHHHHhcccCCcchhhhHHhhh---------hh--------------HHHHHHHHHhhcCcEEEEEEeec
Confidence 456666778899999999988763311110 00 12677788888999888876655
Q ss_pred C
Q 022248 285 S 285 (300)
Q Consensus 285 ~ 285 (300)
+
T Consensus 199 p 199 (215)
T COG0357 199 P 199 (215)
T ss_pred C
Confidence 4
No 200
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.71 E-value=7.1e-08 Score=77.38 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-C---CCCCCcccEEEE
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I---PVSDASVDAVVG 200 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~---~~~~~~~D~v~~ 200 (300)
++.++||+-||+|.++...+.+...+++.||.++.+++..+++++..+.. .++.++..|+.. + ......||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-DKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-GGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-cceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 78999999999999999888877789999999999999999999988875 468888888643 2 124689999997
Q ss_pred cccccCccc-HHHHHHHHH--HcccCCcEEEEEec
Q 022248 201 TLVLCSVKD-VDMTLQEVR--RVLKPGGIYLFVEH 232 (300)
Q Consensus 201 ~~~l~~~~~-~~~~l~~~~--~~LkpgG~l~~~~~ 232 (300)
. -.+.... ...++..+. .+|+++|.+++-..
T Consensus 121 D-PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 121 D-PPYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp ---STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred C-CCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 4 2222233 366777776 78999998888663
No 201
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.71 E-value=1.7e-07 Score=79.59 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=62.1
Q ss_pred HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (300)
Q Consensus 115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 193 (300)
...+++.+. .++.+|||||||+|.++..+++.. ..++++|+++.+++.++++... .++++++.+|+...+++
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVDLP-- 90 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCChh--
Confidence 334444443 467899999999999999998754 4799999999999999877643 14899999999888765
Q ss_pred ccc---EEEEcc
Q 022248 194 SVD---AVVGTL 202 (300)
Q Consensus 194 ~~D---~v~~~~ 202 (300)
.+| +|+++.
T Consensus 91 ~~d~~~~vvsNl 102 (253)
T TIGR00755 91 DFPKQLKVVSNL 102 (253)
T ss_pred HcCCcceEEEcC
Confidence 466 666543
No 202
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.70 E-value=3.3e-07 Score=76.69 Aligned_cols=162 Identities=17% Similarity=0.122 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhhcCC-C-CeEEEECCCCC--hhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc
Q 022248 111 VAGYKSQLFDNLRGK-A-KKVLEIGIGTG--PNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184 (300)
Q Consensus 111 ~~~~~~~~~~~~~~~-~-~~vLDiGcG~G--~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d 184 (300)
...++.+....+... + ...||||||-= ..+.++++ .+.++|+.+|.++..+..++..+....- ....++.+|
T Consensus 52 nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD 129 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQAD 129 (267)
T ss_dssp HHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--
T ss_pred HHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCC
Confidence 344555555555533 3 57999999943 45666665 5889999999999999999998865531 238899999
Q ss_pred cCcCC-----------CCCCcccEEEEcccccCccc---HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhh
Q 022248 185 GEAIP-----------VSDASVDAVVGTLVLCSVKD---VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDP 250 (300)
Q Consensus 185 ~~~~~-----------~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 250 (300)
+.+.. +.-..-=.|++..++|+++| +..++..+++.|.||.+|+++..+..........+...+..
T Consensus 130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~ 209 (267)
T PF04672_consen 130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQ 209 (267)
T ss_dssp TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHc
Confidence 96531 11123336777889999854 67899999999999999999987765444433334333332
Q ss_pred hhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248 251 LQQIVSDGCHLTRQTGNNISEAGFSSVE 278 (300)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 278 (300)
... .....+.+++..+|. ||+.++
T Consensus 210 ~~~--~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 210 AGS--PGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp CCS------B-HHHHHHCCT--TSEE-T
T ss_pred CCC--CceecCHHHHHHHcC--CCccCC
Confidence 211 223567889988885 898644
No 203
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.69 E-value=7.7e-07 Score=76.21 Aligned_cols=132 Identities=18% Similarity=0.168 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-C
Q 022248 111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-E 186 (300)
Q Consensus 111 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~ 186 (300)
+.+.+.++...++ ..+.+|||+|||.|..+-++.+ ..-.+++++|.|+.|++.++..++..... ....+..... .
T Consensus 18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~ 96 (274)
T PF09243_consen 18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN-RNAEWRRVLYRD 96 (274)
T ss_pred HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc-ccchhhhhhhcc
Confidence 4445555554443 4678999999999976655544 23458999999999999999877654311 1111111111 1
Q ss_pred cCCCCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh
Q 022248 187 AIPVSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV 247 (300)
Q Consensus 187 ~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 247 (300)
..++ ...|+|++.++|..+++. ..+++.+.+.+.+ .|+++++...........++..
T Consensus 97 ~~~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~ 155 (274)
T PF09243_consen 97 FLPF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQ 155 (274)
T ss_pred cccC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHH
Confidence 1222 234999999999999762 3456666665655 9999997665443333333333
No 204
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.69 E-value=3.1e-07 Score=77.30 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=80.0
Q ss_pred CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcC--CCCCCEEEEecccCcC-CCCCC-cccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAI-PVSDA-SVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~-~~~~~-~~D~v 198 (300)
+.+.+||=||.|.|..+..+++.+ ..+++.||+++.+++.+++.+.... +..++++++.+|+... .-..+ .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 468899999999999999998754 4689999999999999999876532 3346899999998653 22223 89999
Q ss_pred EEcccccCccc----HHHHHHHHHHcccCCcEEEEEe
Q 022248 199 VGTLVLCSVKD----VDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 199 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+....-...+. -..+++.+.+.|+|||++++-.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 97443211111 2578999999999999999865
No 205
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.69 E-value=1.2e-07 Score=84.77 Aligned_cols=99 Identities=21% Similarity=0.144 Sum_probs=79.5
Q ss_pred CCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 126 AKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
+.+|||++||+|.++..++... ..+|+++|+++.+++.++++++.+++. ++.+..+|+..+....+.||+|++.-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~--~~~v~~~Da~~~l~~~~~fD~V~lDP-- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE--NEKVFNKDANALLHEERKFDVVDIDP-- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--ceEEEhhhHHHHHhhcCCCCEEEECC--
Confidence 4689999999999999997643 358999999999999999999988874 67789999876432146799999842
Q ss_pred cCcccHHHHHHHHHHcccCCcEEEEE
Q 022248 205 CSVKDVDMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 205 ~~~~~~~~~l~~~~~~LkpgG~l~~~ 230 (300)
......++....+.+++||.+++.
T Consensus 134 --~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 --FGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CCCcHHHHHHHHHHhcCCCEEEEE
Confidence 133456778877889999999997
No 206
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=9.9e-07 Score=76.73 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=92.2
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.+|||.-+|.|.+++.++......|+++|+++.+++.++++++-+++. ..+..+.+|+......-+.+|-|+++..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~-~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE-GRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc-ceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 468999999999999999999866666999999999999999999999986 4589999999888765588999998653
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK 236 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 236 (300)
.+...++....+.+++||.+-+.+.....
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 24456788888999999999998876654
No 207
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=7.9e-07 Score=80.47 Aligned_cols=112 Identities=23% Similarity=0.230 Sum_probs=82.3
Q ss_pred HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC--
Q 022248 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-- 190 (300)
Q Consensus 114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 190 (300)
+.....+.+. .++.++||+=||.|.++..+++ ...+|+|+|+++.+++.|+++++.+++. |+.|+.+++++...
T Consensus 281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~-~~~~V~gvEi~~~aV~~A~~NA~~n~i~--N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGID--NVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcc-cCCEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEeCCHHHHhhhc
Confidence 3333444443 3567999999999999999995 5669999999999999999999999985 79999999988642
Q ss_pred -CCCcccEEEEcccccCcccHH-HHHHHHHHcccCCcEEEEEec
Q 022248 191 -SDASVDAVVGTLVLCSVKDVD-MTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 191 -~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~ 232 (300)
....+|.|+..=-= ...+ .+++.+ ..++|..+++++++
T Consensus 358 ~~~~~~d~VvvDPPR---~G~~~~~lk~l-~~~~p~~IvYVSCN 397 (432)
T COG2265 358 WEGYKPDVVVVDPPR---AGADREVLKQL-AKLKPKRIVYVSCN 397 (432)
T ss_pred cccCCCCEEEECCCC---CCCCHHHHHHH-HhcCCCcEEEEeCC
Confidence 23578999972100 0112 334444 44678888999884
No 208
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.67 E-value=1.3e-08 Score=80.55 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
.+.++||+|.|.|..+..++. ...+|++.+.|..|..+.+++ +..++... +..-.+-+||+|.|.+.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p-~feevyATElS~tMr~rL~kk---------~ynVl~~~--ew~~t~~k~dli~clNlL 179 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAP-TFEEVYATELSWTMRDRLKKK---------NYNVLTEI--EWLQTDVKLDLILCLNLL 179 (288)
T ss_pred CCeeEEeccCCCcchhhhhcc-hHHHHHHHHhhHHHHHHHhhc---------CCceeeeh--hhhhcCceeehHHHHHHH
Confidence 457999999999999988874 334799999999999888765 22222111 111123469999999999
Q ss_pred cCcccHHHHHHHHHHcccC-CcEEEEE
Q 022248 205 CSVKDVDMTLQEVRRVLKP-GGIYLFV 230 (300)
Q Consensus 205 ~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 230 (300)
....++-..++.++.+|+| +|++++.
T Consensus 180 DRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 180 DRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 9888999999999999999 8988874
No 209
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=7.5e-07 Score=72.12 Aligned_cols=112 Identities=18% Similarity=0.249 Sum_probs=87.6
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-C--
Q 022248 114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I-- 188 (300)
Q Consensus 114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~-- 188 (300)
++..+++.+ .++++||||.=+|+.+..++. ..+.+++++|+++...+.+.+..+..++. .+++++++.+.+ +
T Consensus 64 fl~~li~~~--~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 64 FLQMLIRLL--NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-HKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHHh--CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-ceeeeeecchhhhHHH
Confidence 333444443 678999999999988877765 45789999999999999999999999986 799999998744 2
Q ss_pred ---CCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 189 ---PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 189 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
..+.++||+++... .=.+....+.++.++||+||++++-.
T Consensus 141 l~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 141 LLADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEec
Confidence 24568999999742 11234467899999999999998854
No 210
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=3.9e-08 Score=73.37 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=64.9
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
.++++++|+|||.|-+..+.+-.....++|+|+++++++.+.+++++..+ ++.+.++|..++-+..+.||.++.+-
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv---qidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV---QIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh---hhheeeeeccchhccCCeEeeEEecC
Confidence 47899999999999988665544556799999999999999999988765 67899999998877779999999754
No 211
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.64 E-value=2.9e-07 Score=81.68 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC
Q 022248 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~ 188 (300)
.+...+++.+...+..|||+-||.|.++..+++. ..+|+|||+++.+++.|+++++.+++. +++|+.++++++
T Consensus 184 ~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~--n~~f~~~~~~~~ 256 (352)
T PF05958_consen 184 KLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID--NVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHC
T ss_pred HHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC--cceEEEeeccch
Confidence 4444455555444448999999999999999864 559999999999999999999999984 999998877543
No 212
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.62 E-value=1e-07 Score=77.60 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=70.2
Q ss_pred HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHHH-------HcCCCCCCEEEEecc
Q 022248 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAV-------AAGLPLTNFKFLQAV 184 (300)
Q Consensus 114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~~-------~~~~~~~~~~~~~~d 184 (300)
.+..+++.+. .++...+|||||.|....+.+-..+ ...+|||+.+...+.|+...+ ..+....++++..+|
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 3444444444 5678999999999998877765334 459999999988877765332 334445688889999
Q ss_pred cCcCCCCC---CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEE
Q 022248 185 GEAIPVSD---ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 185 ~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 230 (300)
+.+.++.. ...|+|++++.... ++....+.+...-||+|.+++..
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred ccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEEC
Confidence 86643211 34689999876543 45566678888889998887653
No 213
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.62 E-value=4.5e-07 Score=77.31 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=82.8
Q ss_pred CCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcC--CCCCCEEEEecccCcC-CCCCCcccEEEE
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAI-PVSDASVDAVVG 200 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~-~~~~~~~D~v~~ 200 (300)
..++||-||.|.|..++.+++.. ..+++.+|+++.+++.+++.+.... ...++++++..|..+. .-..++||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 34699999999999999999853 5689999999999999999886543 2237899999998664 222348999998
Q ss_pred cccccCcc----cHHHHHHHHHHcccCCcEEEEE
Q 022248 201 TLVLCSVK----DVDMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 201 ~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~ 230 (300)
...-.--+ ....+++.+++.|+++|+++.-
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 65433111 1267899999999999999986
No 214
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.61 E-value=5.9e-07 Score=82.17 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=85.6
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG 200 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~ 200 (300)
.++.+|||+++|.|.-+.+++.. ....++++|+++.-++.++++++..|+. ++.+...|...+. ...+.||.|++
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~--nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS--NVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCchhhhhhhchhhcCeEEE
Confidence 57889999999999999998874 3458999999999999999999999874 7888888887653 23467999994
Q ss_pred ----cc--cccCccc----------------HHHHHHHHHHcccCCcEEEEEecccC
Q 022248 201 ----TL--VLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVAA 235 (300)
Q Consensus 201 ----~~--~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~ 235 (300)
+. ++..-++ ..++|....+.|||||+|+.++.+..
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 32 2221111 14678999999999999998875543
No 215
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.59 E-value=5.1e-07 Score=80.81 Aligned_cols=104 Identities=24% Similarity=0.309 Sum_probs=87.2
Q ss_pred CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccC
Q 022248 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS 206 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 206 (300)
.++|-+|||+-.+...+.+.....++-+|+|+..++.+....... .+...+...|+..+.|++++||+|+....+++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~---~~~~~~~~~d~~~l~fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE---RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDA 126 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC---CcceEEEEecchhccCCCcceeEEEecCcccc
Confidence 499999999999999988877778999999999998887765311 24688999999999999999999999888887
Q ss_pred cc-c---------HHHHHHHHHHcccCCcEEEEEecc
Q 022248 207 VK-D---------VDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 207 ~~-~---------~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
+- + ....+.+++|+|+|||+++.+...
T Consensus 127 l~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 127 LFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred ccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 62 1 134689999999999999998864
No 216
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=2.4e-06 Score=68.77 Aligned_cols=121 Identities=20% Similarity=0.212 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhc--CCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC
Q 022248 111 VAGYKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186 (300)
Q Consensus 111 ~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~ 186 (300)
....+.++.++.. .++.+|+|+|+..|.++..+++.. ...|+++|+.+-- . .++|.++++|+.
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~--~~~V~~iq~d~~ 95 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P--IPGVIFLQGDIT 95 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c--CCCceEEeeecc
Confidence 3344445555443 678999999999999999888743 3459999997631 1 247899999986
Q ss_pred cCC--------CCCCcccEEEEcccc--------cCccc---HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHH
Q 022248 187 AIP--------VSDASVDAVVGTLVL--------CSVKD---VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW 244 (300)
Q Consensus 187 ~~~--------~~~~~~D~v~~~~~l--------~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 244 (300)
.-+ +....+|+|++...- +|... ....+.-...+|+|||.+++..+...........+
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~ 172 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKAL 172 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHH
Confidence 643 344568999986544 22111 13456777889999999999887665543333333
No 217
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.49 E-value=2.2e-06 Score=67.91 Aligned_cols=107 Identities=20% Similarity=0.182 Sum_probs=80.4
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCC--CcccEEEEc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSD--ASVDAVVGT 201 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~--~~~D~v~~~ 201 (300)
.+.++||+-+|+|.++...+.+....++.||.+..+....+++++..++. .++.++..|+... +-.. +.||+|+..
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~-~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE-GEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc-cceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 68999999999999999998888889999999999999999999988865 5788888888643 1122 359999974
Q ss_pred cccc-CcccHHHHHHH--HHHcccCCcEEEEEec
Q 022248 202 LVLC-SVKDVDMTLQE--VRRVLKPGGIYLFVEH 232 (300)
Q Consensus 202 ~~l~-~~~~~~~~l~~--~~~~LkpgG~l~~~~~ 232 (300)
=-.+ .+.+....+.. -..+|+|+|.+++-..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 2222 11122223333 4578999999988653
No 218
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.7e-05 Score=65.78 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=82.6
Q ss_pred CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC--CCCcccEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--SDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~v~ 199 (300)
.++.+|||-|.|+|.++.++++ .+-.+++-.|......+.|.+.+++-++. +++++..-|+-...| .+..+|.|+
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG-DNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-cceEEEEeecccCCccccccccceEE
Confidence 6899999999999999999987 45679999999999999999999999986 799999999876544 467899998
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcE
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGI 226 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~ 226 (300)
.. ++.+..++-.+..+||.+|.
T Consensus 183 LD-----lPaPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 183 LD-----LPAPWEAIPHAAKILKDEGG 204 (314)
T ss_pred Ec-----CCChhhhhhhhHHHhhhcCc
Confidence 74 47777788888889998764
No 219
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.44 E-value=2.9e-06 Score=69.15 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=80.7
Q ss_pred EEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEEEEcccccC
Q 022248 129 VLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGTLVLCS 206 (300)
Q Consensus 129 vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~l~~ 206 (300)
|.||||..|++..+|++.. ...++++|+++..++.|++++...++. +++++..+|... ++ +.+..|.|+...+=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE-DRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T-TTEEEEE-SGGGG---GGG---EEEEEEE-H-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc-ccEEEEECCcccccC-CCCCCCEEEEecCCH-
Confidence 6899999999999999853 346999999999999999999999986 689999999644 43 223378877543211
Q ss_pred cccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248 207 VKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG 280 (300)
Q Consensus 207 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 280 (300)
.-...++++....++....|++.. +. ....+++.|.+.||.++...
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILqP-~~--------------------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQP-NT--------------------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEEE-SS---------------------------HHHHHHHHHHTTEEEEEEE
T ss_pred -HHHHHHHHhhHHHhccCCeEEEeC-CC--------------------------ChHHHHHHHHHCCCEEEEeE
Confidence 123455666666666555666533 11 11378899999999977665
No 220
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.44 E-value=4.3e-06 Score=65.26 Aligned_cols=104 Identities=35% Similarity=0.439 Sum_probs=74.6
Q ss_pred EEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc--CCCCC-CcccEEEEccc
Q 022248 129 VLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA--IPVSD-ASVDAVVGTLV 203 (300)
Q Consensus 129 vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~~D~v~~~~~ 203 (300)
++|+|||+|... .+.... ...++|+|+++.++..++........ ..+.+...+... +++.. ..||++ +...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL--GLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC--CceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999865 333221 24899999999999985554432111 116788888776 77776 489999 5544
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK 236 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 236 (300)
..+..+....+.++.+.|+|+|.+++.......
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 128 VLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred ehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444334788899999999999999998865543
No 221
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.39 E-value=9.1e-07 Score=71.16 Aligned_cols=97 Identities=23% Similarity=0.256 Sum_probs=63.5
Q ss_pred CCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--------C--CC
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------V--SD 192 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~--~~ 192 (300)
++.+|||+||++|.++..+++.. ...++|+|+.+. .. ...+.++.+|..... + ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~--~~~~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DP--LQNVSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS---TTEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cc--ccceeeeecccchhhHHHhhhhhccccc
Confidence 45899999999999999998865 589999999875 11 135667777764321 1 12
Q ss_pred CcccEEEEcccccCccc-----------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248 193 ASVDAVVGTLVLCSVKD-----------VDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 193 ~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
+.||+|+|..+...-.+ ....+.-+...|+|||.+++.....
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 68999999774332211 1234556667899999999877553
No 222
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.39 E-value=1e-06 Score=75.63 Aligned_cols=87 Identities=11% Similarity=0.169 Sum_probs=67.3
Q ss_pred HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-
Q 022248 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP- 189 (300)
Q Consensus 114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~- 189 (300)
++.++++.+. .++..+||.+||.|..+..+++.. ...|+|+|.++.+++.+++++.. . .++.++.+++.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~--~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F--GRFTLVHGNFSNLKE 82 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C--CcEEEEeCCHHHHHH
Confidence 3445555554 467799999999999999999853 47999999999999999988754 2 58999999998753
Q ss_pred -CCC--CcccEEEEcccc
Q 022248 190 -VSD--ASVDAVVGTLVL 204 (300)
Q Consensus 190 -~~~--~~~D~v~~~~~l 204 (300)
.++ .++|.|++....
T Consensus 83 ~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 83 VLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHcCCCccCEEEECCCc
Confidence 111 279999975443
No 223
>PRK04148 hypothetical protein; Provisional
Probab=98.38 E-value=4.2e-06 Score=62.85 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=65.2
Q ss_pred CCCeEEEECCCCCh-hHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC-CCcccEEEEcc
Q 022248 125 KAKKVLEIGIGTGP-NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTL 202 (300)
Q Consensus 125 ~~~~vLDiGcG~G~-~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~ 202 (300)
++.+|||||||.|. ++..|++ .+.+|+++|+++..++.+++. .+.++.+|+.+..+. -+.+|+|.+..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 45789999999996 7777775 578999999999999888775 467888998765432 35789998754
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.-++....+.++.+-+ |.-+++...
T Consensus 86 ---pp~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 86 ---PPRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred ---CCHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 2233444445555433 455555543
No 224
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.38 E-value=2.9e-06 Score=74.36 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=74.5
Q ss_pred CCCCeEEEECCCCChhHHHhHh--------CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC--CC
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA--------DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DA 193 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--------~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~ 193 (300)
.++.+|+|.+||+|.++..+.+ ....+++|+|+++.++..++.++.-.+....+..+..+|....+.. ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 3556899999999999888765 2577999999999999999887765554433456777776554432 47
Q ss_pred cccEEEEcc--ccc-C----c--------------ccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 194 SVDAVVGTL--VLC-S----V--------------KDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 194 ~~D~v~~~~--~l~-~----~--------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
.||+|+++- ... + . .....++..+.+.|++||++.++.+.
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 899999842 111 0 0 01124789999999999998887743
No 225
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.36 E-value=2.9e-06 Score=70.27 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=68.3
Q ss_pred HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD 192 (300)
Q Consensus 114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 192 (300)
.+..+.+... ++...|||+|.|||.++..|++ .+.+|+++++++.|+...+++.+..... ...+++.+|+...+++
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe-~~kkVvA~E~Dprmvael~krv~gtp~~-~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLE-AGKKVVAVEIDPRMVAELEKRVQGTPKS-GKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHH-hcCeEEEEecCcHHHHHHHHHhcCCCcc-ceeeEEecccccCCCc-
Confidence 4445555444 6788999999999999999996 5779999999999999999998765543 5889999999887654
Q ss_pred CcccEEEEc
Q 022248 193 ASVDAVVGT 201 (300)
Q Consensus 193 ~~~D~v~~~ 201 (300)
.||.++.+
T Consensus 123 -~fd~cVsN 130 (315)
T KOG0820|consen 123 -RFDGCVSN 130 (315)
T ss_pred -ccceeecc
Confidence 78999873
No 226
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.35 E-value=2.8e-06 Score=75.61 Aligned_cols=100 Identities=10% Similarity=0.039 Sum_probs=81.3
Q ss_pred CCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEEcc
Q 022248 126 AKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTL 202 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~ 202 (300)
+.+|||+.||+|..++.++.. ...+|+++|+++.+++.++++++.+++. ++.++..|+..+- ...+.||+|...-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~--~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE--NIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 368999999999999999875 3368999999999999999999888764 7889999987652 1235799998743
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+..+..++..+.+.+++||.|.+..
T Consensus 123 ----fGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 ----FGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ----CCCcHHHHHHHHHhcccCCEEEEEe
Confidence 2344568899999999999999973
No 227
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=3.7e-06 Score=70.38 Aligned_cols=87 Identities=14% Similarity=0.221 Sum_probs=66.7
Q ss_pred HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (300)
Q Consensus 115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 193 (300)
+.++++... .++.+|||||+|.|.++..|++. +..|+++++++.+++..++.... .++++++.+|+...+++.-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~----~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFAP----YDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhccc----ccceEEEeCchhcCcchhh
Confidence 444555443 35789999999999999999975 45899999999999999988652 2589999999999887643
Q ss_pred -cccEEEEcccccCc
Q 022248 194 -SVDAVVGTLVLCSV 207 (300)
Q Consensus 194 -~~D~v~~~~~l~~~ 207 (300)
.++.|+.+ ..+++
T Consensus 94 ~~~~~vVaN-lPY~I 107 (259)
T COG0030 94 AQPYKVVAN-LPYNI 107 (259)
T ss_pred cCCCEEEEc-CCCcc
Confidence 56777753 34444
No 228
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.30 E-value=6.2e-06 Score=65.10 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=80.1
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
-.+++|||+|+|+|..+...+......++..|+.+..+...+-+.+.+++ .+.+...|... .+..||+|+...+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~d~~g---~~~~~Dl~LagDl 151 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV---SILFTHADLIG---SPPAFDLLLAGDL 151 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc---eeEEeeccccC---CCcceeEEEeece
Confidence 36899999999999988887776677899999999888888888888875 57777777644 4678999999998
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEE-Eeccc
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLF-VEHVA 234 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~ 234 (300)
++.-+....++. +.+.|+..|.-++ -++.+
T Consensus 152 fy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 152 FYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred ecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 887666666777 6666665555544 44433
No 229
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.29 E-value=1.5e-05 Score=67.58 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=67.3
Q ss_pred CCeEEEECCCCChhHHHhHh-C--CCceEEEEcCCHHHHHHHHHHHH-HcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 126 AKKVLEIGIGTGPNLKYYAA-D--TDVQVLGVDPNRKMEKYAQTAAV-AAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~-~--~~~~~~giD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
+.+|+=||||.=-++..+.. . .+..++++|+++.+++.+++.+. ..++. .++.|+++|....+..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-KRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-CCeEEEecchhccccccccCCEEEEh
Confidence 46999999998766655443 2 46789999999999999999887 44554 68999999998776555789999975
Q ss_pred cccc-CcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 202 LVLC-SVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 202 ~~l~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.... .-.+..+++..+.+.++||..+++-.
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 4333 22477889999999999999888854
No 230
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=2.2e-05 Score=69.76 Aligned_cols=110 Identities=18% Similarity=0.221 Sum_probs=84.4
Q ss_pred CCCCeEEEECCCCChhHHHhHhC---CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~ 197 (300)
.++.+|||++++.|.=+.++++. .+..|+++|.++.-++..+++++..|+. ++..+..|...++ ...+.||.
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~--nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR--NVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC--ceEEEecccccccccccccCcCcE
Confidence 57899999999999988888873 2456799999999999999999999985 6788888876553 22235999
Q ss_pred EEEc------ccccCccc----------------HHHHHHHHHHcccCCcEEEEEecccC
Q 022248 198 VVGT------LVLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVAA 235 (300)
Q Consensus 198 v~~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~ 235 (300)
|++. .++.--++ ..++|....+.|||||.|+.++....
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 9952 23321121 24679999999999999999875443
No 231
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.27 E-value=1.8e-06 Score=67.26 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=54.7
Q ss_pred eEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCc-ccEEEE
Q 022248 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDAS-VDAVVG 200 (300)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-~D~v~~ 200 (300)
.|+|+.||.|..+.++++. ..+|++||+++..++.|+.+++..|+. +++.|+++|+.++. +.... +|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~-~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVA-DNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-G-GGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6999999999999999975 558999999999999999999999975 79999999997752 22222 899997
No 232
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.24 E-value=2.2e-05 Score=60.39 Aligned_cols=101 Identities=25% Similarity=0.346 Sum_probs=69.5
Q ss_pred CCCCeEEEECCCCChhHHHhHh-----CCCceEEEEcCCHHHHHHHHHHHHHcCCCC-CCEEEEecccCcCCCCCCcccE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPL-TNFKFLQAVGEAIPVSDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~~giD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~ 197 (300)
.+..+|+|+|||.|+++..++. .++.++++||.++..++.+.++.+..+... .++.+..++...... ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 4678999999999999999998 678899999999999999999888766221 466666666544322 456777
Q ss_pred EEEcccccCcccHHHHHHHHHHcccCCcEEEEE
Q 022248 198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 230 (300)
++..++--.+. +.+++.+.+ |+-.+++.
T Consensus 103 ~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 103 LVGLHACGDLS--DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEeecccchH--HHHHHHHHH---cCCCEEEE
Confidence 77654433332 223444444 55554443
No 233
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.21 E-value=2e-05 Score=67.94 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=80.4
Q ss_pred CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHH--HHH---cCCCCCCEEEEecccCcC-CCCCCccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTA--AVA---AGLPLTNFKFLQAVGEAI-PVSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~--~~~---~~~~~~~~~~~~~d~~~~-~~~~~~~D 196 (300)
+...+||-+|.|.|.-++++.+.+ ..+++-+|++|.|++.++.. ++. .....++++++..|+.+. .-..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 356789999999999999999876 56899999999999999843 332 223457899999888664 23446899
Q ss_pred EEEEcccccCcccH-----HHHHHHHHHcccCCcEEEEEe
Q 022248 197 AVVGTLVLCSVKDV-----DMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 197 ~v~~~~~l~~~~~~-----~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.||...---.-+.. .++..-+.+.|+++|.+++-.
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 99975422211111 356788999999999998854
No 234
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.21 E-value=1.4e-05 Score=77.46 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCChhHHHhHhC-------------------------------------------CCceEEEEcCCHHHH
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD-------------------------------------------TDVQVLGVDPNRKME 161 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-------------------------------------------~~~~~~giD~s~~~~ 161 (300)
++..++|.+||+|.+++..+.. ...+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 5689999999999998776530 113699999999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEecccCcCCCC--CCcccEEEEccccc-Cc---ccHHHHHHHHHHcc---cCCcEEEEEec
Q 022248 162 KYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DASVDAVVGTLVLC-SV---KDVDMTLQEVRRVL---KPGGIYLFVEH 232 (300)
Q Consensus 162 ~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~l~-~~---~~~~~~l~~~~~~L---kpgG~l~~~~~ 232 (300)
+.|++++...++. +.+.|..+|+.+++.+ .++||+|+++--.- .+ .+...++.++.+.+ .+|+.+++...
T Consensus 270 ~~A~~N~~~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 270 QAARKNARRAGVA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHcCCC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 9999999999985 5789999999887543 35799999862111 11 22334444444444 48988888663
No 235
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.13 E-value=9.6e-05 Score=60.04 Aligned_cols=133 Identities=18% Similarity=0.214 Sum_probs=87.5
Q ss_pred CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v 198 (300)
.++.+||-+|..+|....++++ .....|++|+.|+...+..-..++.. +|+--+.+|+.... .--+.+|+|
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----CceeeeeccCCChHHhhcccccccEE
Confidence 5789999999999999999987 45679999999997766665555544 58988999986531 122589999
Q ss_pred EEcccccCcccH-HHHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCc
Q 022248 199 VGTLVLCSVKDV-DMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFS 275 (300)
Q Consensus 199 ~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 275 (300)
++.-. . ++. +-++.++...||+||.++++-....-+. .....+ .+-.+.|++.||+
T Consensus 148 ~~DVa--Q-p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf------------------~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 148 FQDVA--Q-PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVF------------------AEEVKKLKEEGFK 206 (229)
T ss_dssp EEE-S--S-TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHH------------------HHHHHHHHCTTCE
T ss_pred EecCC--C-hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHH------------------HHHHHHHHHcCCC
Confidence 97432 1 343 4467788889999999999764322111 000011 1444667888999
Q ss_pred EEEEee
Q 022248 276 SVELGN 281 (300)
Q Consensus 276 ~v~~~~ 281 (300)
.++.-.
T Consensus 207 ~~e~i~ 212 (229)
T PF01269_consen 207 PLEQIT 212 (229)
T ss_dssp EEEEEE
T ss_pred hheEec
Confidence 876653
No 236
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.10 E-value=4.8e-05 Score=71.48 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=52.6
Q ss_pred CCCeEEEECCCCChhHHHhHhCC---------CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CC
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADT---------DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PV 190 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~ 190 (300)
...+|||.|||+|.++..+++.. ...++|+|+++.++..++.++...+. ..+.+...|.... .-
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeeccccccccccccc
Confidence 45689999999999998887521 25789999999999999998866541 1234444443221 11
Q ss_pred CCCcccEEEEc
Q 022248 191 SDASVDAVVGT 201 (300)
Q Consensus 191 ~~~~~D~v~~~ 201 (300)
..+.||+|+.+
T Consensus 109 ~~~~fD~IIgN 119 (524)
T TIGR02987 109 YLDLFDIVITN 119 (524)
T ss_pred ccCcccEEEeC
Confidence 12579999974
No 237
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.07 E-value=5.5e-05 Score=59.70 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=86.3
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHH----HH--HHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKM----EK--YAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~----~~--~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 195 (300)
+++.+|+|+=-|.|+++.-++.. +...|+++-..+.. .+ ..+...++... .|++.+..+...++ +.+..
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~--aN~e~~~~~~~A~~-~pq~~ 123 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY--ANVEVIGKPLVALG-APQKL 123 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh--hhhhhhCCcccccC-CCCcc
Confidence 58899999999999999988762 34467766543321 11 11111111111 24555555554454 44667
Q ss_pred cEEEEcccccCc-------ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248 196 DAVVGTLVLCSV-------KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN 268 (300)
Q Consensus 196 D~v~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (300)
|+++....-|.+ .....+...+++.|||||++++.++.-.+...... .....+.+...+...
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d-----------t~~~~ri~~a~V~a~ 192 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD-----------TITLHRIDPAVVIAE 192 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh-----------hhhhcccChHHHHHH
Confidence 777753322211 23467899999999999999999965544221111 111234556688888
Q ss_pred HHhcCCcEEEEe
Q 022248 269 ISEAGFSSVELG 280 (300)
Q Consensus 269 l~~aGf~~v~~~ 280 (300)
.+.+||......
T Consensus 193 veaaGFkl~aeS 204 (238)
T COG4798 193 VEAAGFKLEAES 204 (238)
T ss_pred HHhhcceeeeee
Confidence 999999965443
No 238
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.00022 Score=60.48 Aligned_cols=149 Identities=13% Similarity=0.089 Sum_probs=92.2
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHH---Hc-----------------------CCCC---
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV---AA-----------------------GLPL--- 175 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~---~~-----------------------~~~~--- 175 (300)
...+||--|||.|+++..|+. .+..+-|-+.|--|+-...=.+. .. .+..
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~-~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLAC-LGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHHHH-hcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 367899999999999999986 45567777777666533322220 00 0000
Q ss_pred ---------CCEEEEecccCcC-C--CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHH
Q 022248 176 ---------TNFKFLQAVGEAI-P--VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKF 243 (300)
Q Consensus 176 ---------~~~~~~~~d~~~~-~--~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 243 (300)
..+....+|+.+. + -..+.||+|+..+.+....+..+.++.|..+|||||+++=+.+....-....
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~-- 306 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH-- 306 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCC--
Confidence 1122233444332 1 1235799999888888888889999999999999999987664321100000
Q ss_pred HHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248 244 WQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF 283 (300)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 283 (300)
.. .....--.+.+++..+...-||+++..+..+
T Consensus 307 ------g~-~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 307 ------GV-ENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred ------CC-cccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 00 0000113456799999999999988776433
No 239
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=0.00011 Score=57.58 Aligned_cols=116 Identities=18% Similarity=0.206 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-ccCcC--------CCCC
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAI--------PVSD 192 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~~--------~~~~ 192 (300)
.++.+|||+||..|.++.-..+ .+...+.|||+-.-. +.+-+.++.+ |+.+. ..++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-------------PPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-------------CCCCcccccccccCCHHHHHHHHHhCCC
Confidence 6789999999999999977665 367889999974310 1234555665 44331 1456
Q ss_pred CcccEEEEcccccCc----ccHHH-------HHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhh
Q 022248 193 ASVDAVVGTLVLCSV----KDVDM-------TLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQ 252 (300)
Q Consensus 193 ~~~D~v~~~~~l~~~----~~~~~-------~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (300)
-..|+|++.+....- .|... ++.-....++|+|.+++-.+.......+.+.+...+....
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk 205 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVK 205 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcE
Confidence 789999986544321 23333 3344455668999999999888777666666665554443
No 240
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.00 E-value=9.2e-06 Score=63.59 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=76.6
Q ss_pred CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccccc
Q 022248 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~ 205 (300)
...+.|+|.|+|.++...+. ...+|++|+.++...+.|++++.-.|. .+++++.+|+....| +..|+|+|-+.--
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~-~A~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAH-AAERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDYDF--ENADVVICEMLDT 107 (252)
T ss_pred hhceeeccCCcchHHHHHHh-hhceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccccc--cccceeHHHHhhH
Confidence 36899999999999877665 466999999999999999999876775 499999999999988 4689999843211
Q ss_pred Cc--ccHHHHHHHHHHcccCCcEEEE
Q 022248 206 SV--KDVDMTLQEVRRVLKPGGIYLF 229 (300)
Q Consensus 206 ~~--~~~~~~l~~~~~~LkpgG~l~~ 229 (300)
.+ .....++..+...||-++.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 11 2334567777777888877664
No 241
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.98 E-value=4.4e-05 Score=63.19 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=69.0
Q ss_pred CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
+...+|+|||||---++..+.. .++..|+|+|++..+++.....+...+. +..+...|...-+ +....|+.+..-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~---~~~~~v~Dl~~~~-~~~~~DlaLllK 179 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV---PHDARVRDLLSDP-PKEPADLALLLK 179 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TTTSH-TTSEESEEEEET
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC---CcceeEeeeeccC-CCCCcchhhHHH
Confidence 3578999999999988887765 4568999999999999999999888875 5667777776553 457899999988
Q ss_pred cccCcccHHH-HHHHHHHcccCCcEEEEEecccC
Q 022248 203 VLCSVKDVDM-TLQEVRRVLKPGGIYLFVEHVAA 235 (300)
Q Consensus 203 ~l~~~~~~~~-~l~~~~~~LkpgG~l~~~~~~~~ 235 (300)
+++.+..... .--++.+.++-. .++++.+...
T Consensus 180 ~lp~le~q~~g~g~~ll~~~~~~-~~vVSfPtrS 212 (251)
T PF07091_consen 180 TLPCLERQRRGAGLELLDALRSP-HVVVSFPTRS 212 (251)
T ss_dssp -HHHHHHHSTTHHHHHHHHSCES-EEEEEEES--
T ss_pred HHHHHHHHhcchHHHHHHHhCCC-eEEEeccccc
Confidence 7777654421 223333333222 4455554443
No 242
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.98 E-value=6.1e-05 Score=59.85 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=71.7
Q ss_pred CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCC-----CCCEEEEecccCcC-C--CCCCcc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-----LTNFKFLQAVGEAI-P--VSDASV 195 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~~d~~~~-~--~~~~~~ 195 (300)
+...+.|||||.|.++..|+. .++.-++|++|-..+-++.+++++..+.. ..++.+...++... | |..++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 345799999999999999986 57888999999999999999988765411 23566665555432 2 222222
Q ss_pred cEEEEcccccCccc--------HHHHHHHHHHcccCCcEEEEEec
Q 022248 196 DAVVGTLVLCSVKD--------VDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 196 D~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+-.+..+---|+.. ....+.+..-+|++||.++.+..
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 22222111111111 02468889999999999999773
No 243
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.98 E-value=0.00032 Score=56.76 Aligned_cols=111 Identities=12% Similarity=0.054 Sum_probs=77.6
Q ss_pred HHHHHHhhcCCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (300)
Q Consensus 115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 193 (300)
+..+.+.+ +.+.++.||||-.+++..++.+ .....+++.|+++..++.|.+.+...++. ++++...+|....=-.+.
T Consensus 7 L~~va~~V-~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~~dgl~~l~~~d 84 (226)
T COG2384 7 LTTVANLV-KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRLGDGLAVLELED 84 (226)
T ss_pred HHHHHHHH-HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEeccCCccccCccC
Confidence 33444444 3566799999999999999987 45668999999999999999999999886 688888888743322344
Q ss_pred cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEE
Q 022248 194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF 229 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 229 (300)
.+|+|+...+=- .-...++++-.+.|+.=-++++
T Consensus 85 ~~d~ivIAGMGG--~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 85 EIDVIVIAGMGG--TLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred CcCEEEEeCCcH--HHHHHHHHHhhhhhcCcceEEE
Confidence 789888643211 2234456666665653334444
No 244
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.96 E-value=3e-06 Score=61.73 Aligned_cols=99 Identities=26% Similarity=0.359 Sum_probs=44.1
Q ss_pred EEECCCCChhHHHhHhC--CC--ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEEccc
Q 022248 130 LEIGIGTGPNLKYYAAD--TD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGTLV 203 (300)
Q Consensus 130 LDiGcG~G~~~~~l~~~--~~--~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~ 203 (300)
||||+..|..+..+++. .. .+++++|..+. .+.+++.++..++. .+++++.++..+. .++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG--BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-CeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999988888762 22 37999999885 34444444444543 5799999998653 23357899999754
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
-|..+.....++.+.+.|+|||++++-+
T Consensus 78 ~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2333455667899999999999988754
No 245
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.92 E-value=0.00028 Score=61.28 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=64.3
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++.++|||||++|.++..+++. +..|++||..+ +... +.. .++|....+|.....-+.+.+|+++|..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~~----L~~----~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQS----LMD----TGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCHh----hhC----CCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 57899999999999999999875 55999999544 2222 211 25888888887665323678999999653
Q ss_pred ccCcccHHHHHHHHHHcccCC
Q 022248 204 LCSVKDVDMTLQEVRRVLKPG 224 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~Lkpg 224 (300)
..+..+.+-+.++|..|
T Consensus 280 ----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ----cCHHHHHHHHHHHHhcC
Confidence 45667778888888665
No 246
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.91 E-value=0.00011 Score=55.63 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=73.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEcccccC-----c-cc---HHHHHHHHH
Q 022248 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLVLCS-----V-KD---VDMTLQEVR 218 (300)
Q Consensus 150 ~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l~~-----~-~~---~~~~l~~~~ 218 (300)
+|+|+|+-+++++..++++++.++. .+++++..+-+.+. .+++.+|+++.+..--. + .. -...++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-DRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-SGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-CcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 5899999999999999999999875 58999999887764 23358999997643211 1 11 246789999
Q ss_pred HcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248 219 RVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG 280 (300)
Q Consensus 219 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 280 (300)
++|+|||.+.++...+.+.+..- ... ..+|.+-|....|.+....
T Consensus 80 ~lL~~gG~i~iv~Y~GH~gG~eE--~~a---------------v~~~~~~L~~~~~~V~~~~ 124 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPGHPGGKEE--SEA---------------VEEFLASLDQKEFNVLKYQ 124 (140)
T ss_dssp HHEEEEEEEEEEE--STCHHHHH--HHH---------------HHHHHHTS-TTTEEEEEEE
T ss_pred HhhccCCEEEEEEeCCCCCCHHH--HHH---------------HHHHHHhCCcceEEEEEEE
Confidence 99999999999998776643211 100 1255555666777765554
No 247
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.90 E-value=6.2e-05 Score=64.21 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=66.7
Q ss_pred HHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC--
Q 022248 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-- 192 (300)
Q Consensus 116 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~-- 192 (300)
..+++.+. .++..|||||+|.|.++..|++.. .+++++|+++.+.+..++.... .++++++.+|+.++....
T Consensus 20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~----~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS----NPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT----CSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh----cccceeeecchhccccHHhh
Confidence 33444443 367899999999999999999765 7999999999999998887542 258999999998886543
Q ss_pred -CcccEEEEcccccCcccHHHHHHHHHH
Q 022248 193 -ASVDAVVGTLVLCSVKDVDMTLQEVRR 219 (300)
Q Consensus 193 -~~~D~v~~~~~l~~~~~~~~~l~~~~~ 219 (300)
.....|+.+ ..+++. ..++.++..
T Consensus 95 ~~~~~~vv~N-lPy~is--~~il~~ll~ 119 (262)
T PF00398_consen 95 KNQPLLVVGN-LPYNIS--SPILRKLLE 119 (262)
T ss_dssp SSSEEEEEEE-ETGTGH--HHHHHHHHH
T ss_pred cCCceEEEEE-ecccch--HHHHHHHhh
Confidence 234455553 333332 234455544
No 248
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.00025 Score=62.42 Aligned_cols=107 Identities=20% Similarity=0.118 Sum_probs=78.5
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-----C----------------------------Cc-------eEEEEcCCHHHHHH
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-----T----------------------------DV-------QVLGVDPNRKMEKY 163 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-----~----------------------------~~-------~~~giD~s~~~~~~ 163 (300)
.++..++|-=||+|.+++..+-. + .+ .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 35578999999999998877641 1 01 37799999999999
Q ss_pred HHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc--cccCc--ccH----HHHHHHHHHcccCCcEEEEEe
Q 022248 164 AQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL--VLCSV--KDV----DMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 164 a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~--~l~~~--~~~----~~~l~~~~~~LkpgG~l~~~~ 231 (300)
|+.+++..|+. +.|+|.++|+..+.-+-+.+|+|||+- ...-- ... ..+.+.+++.++--+.+++..
T Consensus 270 Ak~NA~~AGv~-d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 270 AKANARAAGVG-DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHhcCCC-ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99999999996 789999999998864437899999852 11100 111 234456666667777777765
No 249
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=2.6e-05 Score=70.36 Aligned_cols=105 Identities=20% Similarity=0.188 Sum_probs=73.2
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CCC---CcccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSD---ASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~---~~~D~v 198 (300)
+.+..+||+.||||.++..+++ ....|+||++++..++.|+.+++.+++. |.+|+++.++++ + +.. .+-++|
T Consensus 382 ~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ngis--Na~Fi~gqaE~~~~sl~~~~~~~~~~v 458 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGIS--NATFIVGQAEDLFPSLLTPCCDSETLV 458 (534)
T ss_pred CCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCcc--ceeeeecchhhccchhcccCCCCCceE
Confidence 4668899999999999999986 4559999999999999999999999985 999999977764 2 111 123333
Q ss_pred EEcccccCcccH-HHHHHHHHHcccCCcEEEEEecc
Q 022248 199 VGTLVLCSVKDV-DMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 199 ~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
....--. ... ..+++.+.+.-++--.++++...
T Consensus 459 ~iiDPpR--~Glh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 459 AIIDPPR--KGLHMKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred EEECCCc--ccccHHHHHHHHhccCccceEEEEcCH
Confidence 3221111 111 23555555555577777776643
No 250
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.87 E-value=8.8e-05 Score=63.88 Aligned_cols=109 Identities=18% Similarity=0.234 Sum_probs=83.2
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CCCCcccEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~v~ 199 (300)
.++.+|||++++.|.-+.++++. ....+++.|++..-+...+.+++..|.. ++.....|.... + .....||.|+
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~--~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF--NVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S--SEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc--eEEEEeeccccccccccccccchhh
Confidence 47789999999999988888873 3579999999999999999999998874 788887777654 1 2234699999
Q ss_pred E----c--ccccCccc----------------HHHHHHHHHHcc----cCCcEEEEEeccc
Q 022248 200 G----T--LVLCSVKD----------------VDMTLQEVRRVL----KPGGIYLFVEHVA 234 (300)
Q Consensus 200 ~----~--~~l~~~~~----------------~~~~l~~~~~~L----kpgG~l~~~~~~~ 234 (300)
+ + .++..-++ ..++|....+.+ ||||+++.++-..
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 5 2 12222222 246799999999 9999999988543
No 251
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=0.0007 Score=57.52 Aligned_cols=84 Identities=10% Similarity=0.114 Sum_probs=64.2
Q ss_pred HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-
Q 022248 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP- 189 (300)
Q Consensus 114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~- 189 (300)
++.+.++.+. .+++..+|.--|.|..+..+++.. ...++|+|-++.+++.|++.+...+ +++.++..++..+.
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~l~~ 87 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFANLAE 87 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHHHHH
Confidence 4445555554 567899999999999999999854 3679999999999999999987654 48888888876542
Q ss_pred ----CCCCcccEEEE
Q 022248 190 ----VSDASVDAVVG 200 (300)
Q Consensus 190 ----~~~~~~D~v~~ 200 (300)
..-+.+|.|+.
T Consensus 88 ~l~~~~i~~vDGiL~ 102 (314)
T COG0275 88 ALKELGIGKVDGILL 102 (314)
T ss_pred HHHhcCCCceeEEEE
Confidence 22346777764
No 252
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.77 E-value=5.1e-05 Score=61.04 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=61.8
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEEEE
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVVG 200 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~ 200 (300)
....|+|.-||.|..+...+. .+..|++||+++.-+..|+.+++..|++ ++++|+++|+.++ .+....+|+|..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~-~~~~VisIdiDPikIa~AkhNaeiYGI~-~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFAL-QGPYVIAIDIDPVKIACARHNAEVYGVP-DRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHH-hCCeEEEEeccHHHHHHHhccceeecCC-ceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 456899999999998888875 4668999999999999999999999997 5999999999764 344344667775
Q ss_pred c
Q 022248 201 T 201 (300)
Q Consensus 201 ~ 201 (300)
+
T Consensus 172 s 172 (263)
T KOG2730|consen 172 S 172 (263)
T ss_pred C
Confidence 3
No 253
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=4.4e-05 Score=58.41 Aligned_cols=110 Identities=16% Similarity=0.159 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCChh-HHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEecccCc--CCCCCCcccEEE
Q 022248 125 KAKKVLEIGIGTGPN-LKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEA--IPVSDASVDAVV 199 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~-~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~--~~~~~~~~D~v~ 199 (300)
.+.+|||+|.|--.+ +..++. .+...|...|-+...++..++....+-.. ...+....-+... ...+...||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 457899999995443 444443 46678999999999999888776443111 1122111111111 123446899999
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
|..++..-......++.|+++|+|.|.-++..+-+
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 98887765566778899999999999988876433
No 254
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.0015 Score=53.72 Aligned_cols=143 Identities=19% Similarity=0.207 Sum_probs=92.6
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEE-EEecccCcCC---CCCCcccEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFK-FLQAVGEAIP---VSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~d~~~~~---~~~~~~D~v~ 199 (300)
.++..+||||+.||.++..+++....+|+++|..-.++..--+. . +++. +...|+..+. +. +..|+++
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d----~rV~~~E~tN~r~l~~~~~~-~~~d~~v 149 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---D----PRVIVLERTNVRYLTPEDFT-EKPDLIV 149 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---C----CcEEEEecCChhhCCHHHcc-cCCCeEE
Confidence 68899999999999999999988788999999988766543222 1 3443 3445655442 33 3788999
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcC---CcccchHHHHHHHhcCCcE
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSD---GCHLTRQTGNNISEAGFSS 276 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~aGf~~ 276 (300)
|.-++. ....+|..+..+++|+|.++..--..-+.+ +..... .....+ ......++.+.+.+.||++
T Consensus 150 ~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKPQFEag------r~~v~k-kGvv~d~~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 150 IDVSFI---SLKLILPALLLLLKDGGDLVLLVKPQFEAG------REQVGK-KGVVRDPKLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred EEeehh---hHHHHHHHHHHhcCCCceEEEEecchhhhh------hhhcCc-CceecCcchHHHHHHHHHHHHhhcCcEE
Confidence 865544 446678899999999999888653222111 111110 000000 0112347888888899998
Q ss_pred EEEeeecc
Q 022248 277 VELGNAFL 284 (300)
Q Consensus 277 v~~~~~~~ 284 (300)
..+....+
T Consensus 220 ~gl~~Spi 227 (245)
T COG1189 220 KGLIKSPI 227 (245)
T ss_pred eeeEccCc
Confidence 88875444
No 255
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.73 E-value=0.00014 Score=55.94 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=47.3
Q ss_pred eEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC
Q 022248 128 KVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186 (300)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~ 186 (300)
++||+|||.|.++..+++. +..+++++|+++.+.+.++++++..++. ++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~--~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP--NVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEEeeee
Confidence 4899999999999988864 3458999999999999999999887763 5777766654
No 256
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.00047 Score=51.99 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=83.8
Q ss_pred HhHHHHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec
Q 022248 105 KSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183 (300)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 183 (300)
-+|...-.+.+...+..+. .+.++.+|+|+|.|+...+.++..-...+|+++++-.+.+++-+.-..++. ....|..-
T Consensus 51 vPYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~-k~trf~Rk 129 (199)
T KOG4058|consen 51 VPYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA-KSTRFRRK 129 (199)
T ss_pred ccccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc-cchhhhhh
Confidence 3444444455555666665 455899999999999998888755568999999999999999888777775 57888888
Q ss_pred ccCcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 184 VGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 184 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+.+..+.+ |..|+.+.+-.-++|.+ .++..-+..|..++..-+
T Consensus 130 dlwK~dl~d--y~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 130 DLWKVDLRD--YRNVVIFGAESVMPDLE---DKLRTELPANTRVVACRF 173 (199)
T ss_pred hhhhccccc--cceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEec
Confidence 887777654 44555544444445543 334444555666655443
No 257
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.62 E-value=0.0044 Score=55.30 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=65.7
Q ss_pred CCCeEEEECCCCChhHHHhHhC----------------CCceEEEEcCCHHHHHHHHHHHHH---------cCC--CCCC
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD----------------TDVQVLGVDPNRKMEKYAQTAAVA---------AGL--PLTN 177 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~----------------~~~~~~giD~s~~~~~~a~~~~~~---------~~~--~~~~ 177 (300)
+..+|+|+|||+|..+..+... +..++..-|+...=....-+.+.. .++ ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4678999999999776555321 346788888754333332222211 000 0001
Q ss_pred EEEE---ecccCcCCCCCCcccEEEEcccccCccc--------------------------------------HHHHHHH
Q 022248 178 FKFL---QAVGEAIPVSDASVDAVVGTLVLCSVKD--------------------------------------VDMTLQE 216 (300)
Q Consensus 178 ~~~~---~~d~~~~~~~~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~ 216 (300)
.-|+ .+.+..--|+.++.+++++.+++||+.. ...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 2333333478999999999999998842 1123444
Q ss_pred HHHcccCCcEEEEEeccc
Q 022248 217 VRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 217 ~~~~LkpgG~l~~~~~~~ 234 (300)
=.+-|.|||++++....+
T Consensus 223 Ra~ELvpGG~mvl~~~Gr 240 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGR 240 (386)
T ss_pred HHHHhccCcEEEEEEecC
Confidence 455688999999987655
No 258
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=1.4e-05 Score=60.61 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=45.1
Q ss_pred EEEEecccCcCCCCCCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEec
Q 022248 178 FKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 178 ~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+.+++......+|.+++.|+|.+-++++|+.- -..++++++|.|||||+|-+..+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 44455445567899999999999999999853 45689999999999999999764
No 259
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.58 E-value=0.00055 Score=58.74 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=48.0
Q ss_pred CCeEEEECCCCC-hhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc-CCCCCCEEEEecccCc-----CCCCCCcccEE
Q 022248 126 AKKVLEIGIGTG-PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEA-----IPVSDASVDAV 198 (300)
Q Consensus 126 ~~~vLDiGcG~G-~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~-----~~~~~~~~D~v 198 (300)
..++||||+|.. .+.+..++..+.+++|+|+++..++.|+++++.+ ++. .+|+++...-.. +-...+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEcCCccccchhhhcccceeeEE
Confidence 468999999976 3444334456899999999999999999999998 775 688887553221 12234689999
Q ss_pred EEcccccC
Q 022248 199 VGTLVLCS 206 (300)
Q Consensus 199 ~~~~~l~~ 206 (300)
+|+=-++.
T Consensus 182 mCNPPFy~ 189 (299)
T PF05971_consen 182 MCNPPFYS 189 (299)
T ss_dssp EE-----S
T ss_pred ecCCcccc
Confidence 99755543
No 260
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.54 E-value=0.024 Score=47.00 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=75.0
Q ss_pred CCCCeEEEECCCCChhHHHhH-hCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CC-CCCCcccEEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IP-VSDASVDAVVG 200 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~ 200 (300)
..+++||-+|=+.-.. ++++ .....+++.+|+++..++..++.+++.++ +++.+..|+.. +| --.+.||++++
T Consensus 43 L~gk~il~lGDDDLtS-lA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTS-LALALTGLPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp STT-EEEEES-TT-HH-HHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTSS-BSEEEE
T ss_pred ccCCEEEEEcCCcHHH-HHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecccccCCHHHhcCCCEEEe
Confidence 4789999999665432 3332 35677999999999999999999999987 48888888855 34 22489999997
Q ss_pred cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248 201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG 280 (300)
Q Consensus 201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 280 (300)
. -.+......-++.+....||..|...+......+. ....|. ++++.+.+.||-+.++.
T Consensus 119 D-PPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-s~~~~~-------------------~~Q~~l~~~gl~i~dii 177 (243)
T PF01861_consen 119 D-PPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-SPDKWL-------------------EVQRFLLEMGLVITDII 177 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT---HHHHH-------------------HHHHHHHTS--EEEEEE
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-cHHHHH-------------------HHHHHHHHCCcCHHHHH
Confidence 3 22223345668999999998866444444333221 111111 66777778888876664
No 261
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.0049 Score=49.28 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=90.8
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~ 199 (300)
.++.+||=+|..+|....++++- ....+++|+.|+...+..-..++.. +|+--+.+|+.... .-=+..|+|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecccCCcHHhhhhcccccEEE
Confidence 67899999999999999999873 3468999999998887776666554 47888888886532 2225688888
Q ss_pred EcccccCcccHH-HHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248 200 GTLVLCSVKDVD-MTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278 (300)
Q Consensus 200 ~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 278 (300)
..-+ -++.. -+..++..-||+||.++++--...-+.+.. -...+ .+-.+.|++.||++++
T Consensus 151 ~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~d--p~~vf--------------~~ev~kL~~~~f~i~e 211 (231)
T COG1889 151 QDVA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTAD--PEEVF--------------KDEVEKLEEGGFEILE 211 (231)
T ss_pred EecC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCC--HHHHH--------------HHHHHHHHhcCceeeE
Confidence 6321 13333 356788899999998888654443321100 00011 1334567889999877
Q ss_pred Eee
Q 022248 279 LGN 281 (300)
Q Consensus 279 ~~~ 281 (300)
...
T Consensus 212 ~~~ 214 (231)
T COG1889 212 VVD 214 (231)
T ss_pred Eec
Confidence 653
No 262
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.51 E-value=0.00076 Score=58.21 Aligned_cols=87 Identities=10% Similarity=0.138 Sum_probs=67.1
Q ss_pred HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--
Q 022248 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-- 189 (300)
Q Consensus 114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-- 189 (300)
++.++++.+. .++..++|.-+|.|..+..+++. +..+++|+|.++.+++.+++.++..+ .++.++.+++.++.
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANFFEH 84 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHHHHH
Confidence 3445555554 46789999999999999999874 34799999999999999999886542 48999999987653
Q ss_pred ---CCCCcccEEEEccc
Q 022248 190 ---VSDASVDAVVGTLV 203 (300)
Q Consensus 190 ---~~~~~~D~v~~~~~ 203 (300)
...+++|.|++...
T Consensus 85 l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 85 LDELLVTKIDGILVDLG 101 (305)
T ss_pred HHhcCCCcccEEEEecc
Confidence 23357999997543
No 263
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.50 E-value=0.00026 Score=64.13 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=64.2
Q ss_pred CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccC
Q 022248 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS 206 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 206 (300)
..|+|...|.|.|+.+|.+.+ |..+...+..-.-.-..+-+.|+ +.....=.|.++.-+.+||+|++..++..
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGL----IG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGL----IGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhccc----chhccchhhccCCCCcchhheehhhhhhh
Confidence 579999999999999997643 33333322210001111222332 22222223556666689999999888776
Q ss_pred cc---cHHHHHHHHHHcccCCcEEEEEe
Q 022248 207 VK---DVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 207 ~~---~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.. +...++-|+-|+|+|+|.+++-+
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEec
Confidence 64 45788999999999999999966
No 264
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.0013 Score=59.83 Aligned_cols=129 Identities=18% Similarity=0.231 Sum_probs=89.1
Q ss_pred hhhhHhHHHHHHHHHHHHHHhhcC----CCCeEEEECCCCChhHHHhHh-----CCCceEEEEcCCHHHHHHHHHHHHHc
Q 022248 101 NSSMKSYEAEVAGYKSQLFDNLRG----KAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAA 171 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vLDiGcG~G~~~~~l~~-----~~~~~~~giD~s~~~~~~a~~~~~~~ 171 (300)
+...-.|...-......+++..+. ...+|+-+|.|.|-+..+..+ ....++++|+-++.++-..+. ....
T Consensus 339 EkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~ 417 (649)
T KOG0822|consen 339 EKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFE 417 (649)
T ss_pred hccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchh
Confidence 333334554444555556665542 245788999999988776654 245789999999999988876 3334
Q ss_pred CCCCCCEEEEecccCcCCCCCCcccEEEEcccccCccc---HHHHHHHHHHcccCCcEEEEEec
Q 022248 172 GLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD---VDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 172 ~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.++ .+|+++..|+..++-+.++.|++++- .|-.+.| -.++|.-+.+.|||+|+.|=...
T Consensus 418 ~W~-~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 418 CWD-NRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred hhc-CeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence 444 68999999999998556889998852 2222222 25788999999999998776443
No 265
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.39 E-value=0.0012 Score=57.71 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=69.2
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc-cCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-GEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~D~v~~~ 201 (300)
.++.+|+=+|+| -|.++.++++..+++|+++|.+++-.+.|++.- .-.++... ......-.+.||+|+..
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG--------Ad~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG--------ADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC--------CcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 578888888886 557888888867799999999999998888762 22333322 22222112349999975
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
-. ...+....+.|++||.++++....
T Consensus 237 v~-------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 237 VG-------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred CC-------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 43 335788899999999999998764
No 266
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.38 E-value=0.0027 Score=56.28 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=82.1
Q ss_pred CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v 198 (300)
.++.||||..+..|.=+.+++. +....+++.|.+..-++..+.++...|+. +......|...+| ++. +||-|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~--ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT--NTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC--ceEEEccCcccccccccCc-cccee
Confidence 5788999999999988888776 34568999999999999999999999874 6777777776654 443 89999
Q ss_pred EE----cc--cccC------c---cc-------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248 199 VG----TL--VLCS------V---KD-------VDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 199 ~~----~~--~l~~------~---~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
+. +. ++.- . .+ .+++|......+++||+|+.++...
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 94 33 2211 1 11 2467888889999999999987544
No 267
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0044 Score=53.66 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=65.3
Q ss_pred CCCCeEEEECCCCChhHHHhHh-CCC-ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC--cCCCC-CCcccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA-DTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--AIPVS-DASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~--~~~~~-~~~~D~v 198 (300)
...++|||+|.|.|.-+.++-. .+. ..++.++.|+..-+.........+. ....+...|+. .++++ ...|+++
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCccceeehh
Confidence 4567899999999865554433 222 3577788888665555544433332 12223233321 12222 2456666
Q ss_pred EEcccccCccc---HHHHHHHHHHcccCCcEEEEEecccC
Q 022248 199 VGTLVLCSVKD---VDMTLQEVRRVLKPGGIYLFVEHVAA 235 (300)
Q Consensus 199 ~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~ 235 (300)
+...-|-+..+ ....++.+..++.|||.|++++....
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 66554444332 23478999999999999999996543
No 268
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.29 E-value=0.007 Score=53.44 Aligned_cols=160 Identities=14% Similarity=0.093 Sum_probs=79.9
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-----------------CCceEEEEcCCHHHHHHHHHHHHHcC--C-CCCCE--EEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-----------------TDVQVLGVDPNRKMEKYAQTAAVAAG--L-PLTNF--KFL 181 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-----------------~~~~~~giD~s~~~~~~a~~~~~~~~--~-~~~~~--~~~ 181 (300)
++..+|+|+||..|..+..+... +..+++.-|+-..=....-+.+.... + ...++ .-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 45679999999999877666431 12678888874432222222221110 0 00122 223
Q ss_pred ecccCcCCCCCCcccEEEEcccccCccc---------------------------------------HHHHHHHHHHccc
Q 022248 182 QAVGEAIPVSDASVDAVVGTLVLCSVKD---------------------------------------VDMTLQEVRRVLK 222 (300)
Q Consensus 182 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~---------------------------------------~~~~l~~~~~~Lk 222 (300)
.+.+..--+|+++.|++++.+++||+.. ...+|+.=.+=|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 4555555578999999999999998821 0123444455678
Q ss_pred CCcEEEEEecccCCC-------chHHHHHHHhhhhhhh------------hhcCCcccchHHHHHHHhcC-CcEEEEeee
Q 022248 223 PGGIYLFVEHVAAKD-------GTFLKFWQNVVDPLQQ------------IVSDGCHLTRQTGNNISEAG-FSSVELGNA 282 (300)
Q Consensus 223 pgG~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~aG-f~~v~~~~~ 282 (300)
|||++++........ ......+...+..+-. .....+.+.+|+++.+++.| |++..++..
T Consensus 175 ~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~ 254 (334)
T PF03492_consen 175 PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELF 254 (334)
T ss_dssp EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEE
T ss_pred cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEE
Confidence 999999987655441 1223333333222210 00112457789999997755 555545544
Q ss_pred c
Q 022248 283 F 283 (300)
Q Consensus 283 ~ 283 (300)
.
T Consensus 255 ~ 255 (334)
T PF03492_consen 255 E 255 (334)
T ss_dssp E
T ss_pred e
Confidence 3
No 269
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.25 E-value=0.00092 Score=54.09 Aligned_cols=103 Identities=18% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCCeEEEECCCCChhHHHhHh-----CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-------C-C
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-------V-S 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-----~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-------~-~ 191 (300)
++..|+|+|.-.|..+..++. ....+|+|||+........ ..+...+ .++++++++|..+.. . .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~-~~rI~~i~Gds~d~~~~~~v~~~~~ 108 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPM-SPRITFIQGDSIDPEIVDQVRELAS 108 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSSTHHHHTSGSS--
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccc-cCceEEEECCCCCHHHHHHHHHhhc
Confidence 678999999999987776654 2567999999954332221 1111122 158999999986532 1 1
Q ss_pred CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 192 DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 192 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.....+|+ ..+-|...+..+.|+....++++|+++++.+
T Consensus 109 ~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 109 PPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp --SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred cCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 12333444 4455555677788888999999999999965
No 270
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=97.16 E-value=0.0002 Score=51.42 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=43.2
Q ss_pred cccEEEEcccccCc------ccHHHHHHHHHHcccCCcEEEEEecccCC---CchHHHHHHHhhhhhhhhhcCCcccchH
Q 022248 194 SVDAVVGTLVLCSV------KDVDMTLQEVRRVLKPGGIYLFVEHVAAK---DGTFLKFWQNVVDPLQQIVSDGCHLTRQ 264 (300)
Q Consensus 194 ~~D~v~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (300)
.||+|+|..+.-++ .....+++++++.|+|||.|++.-..... ...........+.. --..+++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~-------i~lrP~~ 73 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKS-------IKLRPDQ 73 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH-----------GGG
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhc-------eEEChHH
Confidence 48999999887766 23467899999999999999985432210 00011111111111 1234557
Q ss_pred HHHHHHh--cCCcEEEEeee
Q 022248 265 TGNNISE--AGFSSVELGNA 282 (300)
Q Consensus 265 ~~~~l~~--aGf~~v~~~~~ 282 (300)
+.+.|.+ .||..++....
T Consensus 74 F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp HHHHHTSTTT---EEEEE--
T ss_pred HHHHHHhcccceEEEEEccc
Confidence 8888877 69998775443
No 271
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.05 E-value=0.0014 Score=58.24 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=65.8
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~ 202 (300)
.....|||||.|||.++...++..+-.+++++.-..|.+.|++....+|.. +++.++.---.++.. +....|+++.-.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S-dkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS-DKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc-cceeeeccccceeeecCcchhhhhhHhh
Confidence 345679999999999988777766778999999999999999999999987 688877554444321 123355554321
Q ss_pred cccCc--ccHHHHHHHHHHcccC
Q 022248 203 VLCSV--KDVDMTLQEVRRVLKP 223 (300)
Q Consensus 203 ~l~~~--~~~~~~l~~~~~~Lkp 223 (300)
..-.+ ......+++.++.|..
T Consensus 144 fdtEligeGalps~qhAh~~L~~ 166 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDMLLV 166 (636)
T ss_pred hhhhhhccccchhHHHHHHHhcc
Confidence 11111 1122345677766643
No 272
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.02 E-value=0.12 Score=44.04 Aligned_cols=153 Identities=13% Similarity=0.065 Sum_probs=92.6
Q ss_pred CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CCCCEEEEecccCc-C-------CCCCCccc
Q 022248 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-PLTNFKFLQAVGEA-I-------PVSDASVD 196 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~-~-------~~~~~~~D 196 (300)
...|+.+|||--.-...+....+..++=+|. +++++.-++.+.+.+. ...+..++..|+.. + .+..+.--
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 4569999999876665554333466777775 4455555566665432 23578888888852 1 13334455
Q ss_pred EEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhh---hhhcCCcccchHHHHHHHh
Q 022248 197 AVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQ---QIVSDGCHLTRQTGNNISE 271 (300)
Q Consensus 197 ~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~ 271 (300)
++++-.++.+++. ...+++.+.+...||+.+++-..............+....... ..........+++.+.|..
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAE 240 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHH
Confidence 7778888888854 4578999998888998888754433111111111111111110 0011123467899999999
Q ss_pred cCCcEEEE
Q 022248 272 AGFSSVEL 279 (300)
Q Consensus 272 aGf~~v~~ 279 (300)
.||+..+.
T Consensus 241 ~Gw~~~~~ 248 (260)
T TIGR00027 241 RGWRASEH 248 (260)
T ss_pred CCCeeecC
Confidence 99998765
No 273
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.90 E-value=0.02 Score=49.26 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=74.6
Q ss_pred eEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC--CCcccEEEEccccc
Q 022248 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DASVDAVVGTLVLC 205 (300)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~l~ 205 (300)
+++|+.||.|.+...+.......+.++|+++.+++..+.+.. .. ++.+|+.++... .+.+|+++...-..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-------~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-------NK-LIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-------CC-CccCccccCchhhcCCCCCEEEeCCCCh
Confidence 699999999999888765444457889999999988887752 11 456677665422 35799999765333
Q ss_pred Cc---------ccHH-HHHHHHHH---cccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248 206 SV---------KDVD-MTLQEVRR---VLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA 272 (300)
Q Consensus 206 ~~---------~~~~-~~l~~~~~---~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 272 (300)
.+ .|.. .++.++.+ .++|. +++++++..-... ......+.+.+.|++.
T Consensus 74 ~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~-----------------~~~~~~~~i~~~l~~~ 134 (275)
T cd00315 74 PFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTH-----------------DNGNTLKVILNTLEEL 134 (275)
T ss_pred hhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhcc-----------------CchHHHHHHHHHHHhC
Confidence 22 1222 23333333 34554 5666655432110 0001124777888889
Q ss_pred CCcE
Q 022248 273 GFSS 276 (300)
Q Consensus 273 Gf~~ 276 (300)
||.+
T Consensus 135 GY~~ 138 (275)
T cd00315 135 GYNV 138 (275)
T ss_pred CcEE
Confidence 9884
No 274
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0078 Score=51.00 Aligned_cols=108 Identities=17% Similarity=0.118 Sum_probs=81.2
Q ss_pred CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcC--CCCCCcccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI--PVSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~--~~~~~~~D~v 198 (300)
...+++|-||.|.|.+.+..+.+ .-.++..+|+....++..++..... +...+++.+..+|...+ ..+.++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 46789999999999998888764 3357889999999999999877653 45557899998887543 2447899999
Q ss_pred EEcccccCccc----HHHHHHHHHHcccCCcEEEEEe
Q 022248 199 VGTLVLCSVKD----VDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 199 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+.-..---.+- .+.+++.+.+.||+||+++...
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 96432111111 2457889999999999999865
No 275
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.71 E-value=0.014 Score=48.77 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=70.3
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC----CCCEEEEecccCc---CCCCCCc-cc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP----LTNFKFLQAVGEA---IPVSDAS-VD 196 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~---~~~~~~~-~D 196 (300)
...+||++|+|+|..+...+.....+|.-.|....+ ...+.+....... ...+.....+... ..+..+. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 356799999999977777666678899999985543 3333332222111 0133333323222 1122233 99
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
+|+...+++.......++.-++..|..+|.+++....+
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 99999999988888888888999998888666665433
No 276
>PHA01634 hypothetical protein
Probab=96.50 E-value=0.038 Score=40.86 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=52.1
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 200 (300)
-.+++|+|||.+.|..+++++-.....|+++++++...+..++.++...+- ++.. -....+-.=+.||+.++
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~-DK~v----~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNIC-DKAV----MKGEWNGEYEDVDIFVM 98 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheee-ecee----ecccccccCCCcceEEE
Confidence 478999999999999999988777778999999999999999877654321 1111 11123333467887775
No 277
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.44 E-value=0.0065 Score=46.79 Aligned_cols=102 Identities=17% Similarity=0.098 Sum_probs=63.5
Q ss_pred CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEE-EEecccC-cCCCCCCcccEEEEccc
Q 022248 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFK-FLQAVGE-AIPVSDASVDAVVGTLV 203 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~d~~-~~~~~~~~~D~v~~~~~ 203 (300)
+++.+-+|+..=+.-....+....++.-||.++--++.--+ +++. +...|+. +..--.++||.+.|..+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheech
Confidence 46788888887655544445566678888876532211100 1111 1111111 11112478999999999
Q ss_pred ccCcc-----c---H---HHHHHHHHHcccCCcEEEEEecccCC
Q 022248 204 LCSVK-----D---V---DMTLQEVRRVLKPGGIYLFVEHVAAK 236 (300)
Q Consensus 204 l~~~~-----~---~---~~~l~~~~~~LkpgG~l~~~~~~~~~ 236 (300)
++|+- | + ...+.++.++|||||.|++..+...+
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 98871 2 2 45789999999999999999877653
No 278
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.43 E-value=0.027 Score=52.44 Aligned_cols=100 Identities=21% Similarity=0.270 Sum_probs=67.3
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-----------C--C
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-----------I--P 189 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-----------~--~ 189 (300)
.++.+|+=+|||. |..+...++..+++|+++|.++..++.+++. | .++...+..+ + .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G-----A~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G-----AEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C-----CeEEEeccccccccccchhhhcchh
Confidence 3688999999995 5566666777788999999999988888763 2 1222111100 0 0
Q ss_pred --------CCC--CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 190 --------VSD--ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 190 --------~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+.+ ..+|+|+.......-+.+..+.+++.+.+||||+++.+..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 4699999765543323343446999999999999998764
No 279
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.36 E-value=0.014 Score=50.09 Aligned_cols=108 Identities=21% Similarity=0.222 Sum_probs=74.2
Q ss_pred CeEEEECCCCChhHHHhHhC---------------------CCceEEEEcCCH--HHHHHHHHHHHHc------------
Q 022248 127 KKVLEIGIGTGPNLKYYAAD---------------------TDVQVLGVDPNR--KMEKYAQTAAVAA------------ 171 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~---------------------~~~~~~giD~s~--~~~~~a~~~~~~~------------ 171 (300)
.+||.||.|-|.=..+++.. ....++.||+.+ .++......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 69999999998544444321 114899999865 5566665555443
Q ss_pred -CCC--CCCEEEEecccCcCCCC-------CCcccEEEEcccccCc-----ccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 172 -GLP--LTNFKFLQAVGEAIPVS-------DASVDAVVGTLVLCSV-----KDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 172 -~~~--~~~~~~~~~d~~~~~~~-------~~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
... .=++.|.+.|+..+..+ ....|+|+..+.+..+ ..-.++|..+-..++||..|+|++..+
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 001 11578899998776532 2357899888877755 344578999999999999999998654
No 280
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.36 E-value=0.011 Score=48.32 Aligned_cols=111 Identities=18% Similarity=0.208 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCChhHHHhHhC-------CC---ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD-------TD---VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----- 189 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-------~~---~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----- 189 (300)
.-.+++|+....|.++..|.++ .+ ..+++||+-+ | ..+ +.|.-+++|+....
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M----------aPI--~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M----------API--EGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C----------Ccc--CceEEeecccCCHhHHHHH
Confidence 4578999999999999888763 11 2399999844 2 111 46677888886542
Q ss_pred ---CCCCcccEEEEccc-----ccCcccH------HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh
Q 022248 190 ---VSDASVDAVVGTLV-----LCSVKDV------DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV 248 (300)
Q Consensus 190 ---~~~~~~D~v~~~~~-----l~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 248 (300)
|..+..|+|+|..+ +|.+... ...|.-...+|||||.|+.--+-......+..-++.++
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff 180 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFF 180 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHh
Confidence 56679999999654 4444332 24567778899999999886544433333333333333
No 281
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.35 E-value=0.035 Score=49.82 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=75.9
Q ss_pred CCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEEc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGT 201 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~ 201 (300)
++.+|||.=+|+|.=++.++.. ...+|+.-|+++.+++..+++++.+++..+.+++...|+..+- ...+.||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl- 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL- 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-
Confidence 4568999999999877776653 3468999999999999999999999987436888888886643 34678999975
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
..+-.+..++....+.++.||.|.+..
T Consensus 128 ---DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 ---DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 334566778999999999999999964
No 282
>PRK10742 putative methyltransferase; Provisional
Probab=96.31 E-value=0.039 Score=46.14 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=56.8
Q ss_pred eEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC----CC---CCCEEEEecccCcC-CCCCCcccEEE
Q 022248 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG----LP---LTNFKFLQAVGEAI-PVSDASVDAVV 199 (300)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~----~~---~~~~~~~~~d~~~~-~~~~~~~D~v~ 199 (300)
+|||+-+|.|..+..++.. +++|+++|-++.+....+..++... +. ..+++++.+|.... .-....||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 8999999999999999865 6679999999999999998887641 11 13688888887553 21234799999
Q ss_pred Ecc
Q 022248 200 GTL 202 (300)
Q Consensus 200 ~~~ 202 (300)
+.=
T Consensus 170 lDP 172 (250)
T PRK10742 170 LDP 172 (250)
T ss_pred ECC
Confidence 743
No 283
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.22 E-value=0.021 Score=46.70 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=55.9
Q ss_pred hcCCCCeEEEECCCCChhHHHh-HhCCCceEEEEcCCHHHHHHHHHHHHHc-CCCCCCEEEEecccCc-----CCCCCCc
Q 022248 122 LRGKAKKVLEIGIGTGPNLKYY-AADTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEA-----IPVSDAS 194 (300)
Q Consensus 122 ~~~~~~~vLDiGcG~G~~~~~l-~~~~~~~~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~-----~~~~~~~ 194 (300)
+..+..++||||.|.--.=-.+ ....+...+|.|+++..++.|+..+..+ ++. ..++.....-.. +-...+.
T Consensus 75 ~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~-~~I~lr~qk~~~~if~giig~nE~ 153 (292)
T COG3129 75 IPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE-RAIRLRRQKDSDAIFNGIIGKNER 153 (292)
T ss_pred CCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh-hheeEEeccCccccccccccccce
Confidence 3356778999998864211111 1257889999999999999999998876 443 345544332111 1234689
Q ss_pred ccEEEEcccccC
Q 022248 195 VDAVVGTLVLCS 206 (300)
Q Consensus 195 ~D~v~~~~~l~~ 206 (300)
||+++|+--+|.
T Consensus 154 yd~tlCNPPFh~ 165 (292)
T COG3129 154 YDATLCNPPFHD 165 (292)
T ss_pred eeeEecCCCcch
Confidence 999999876663
No 284
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.03 Score=49.09 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCeEEEECCCCChhHHHhHhC---------CCceEEEEcCCHHHHHHHHHHHHHc
Q 022248 106 SYEAEVAGYKSQLFDNLRG-KAKKVLEIGIGTGPNLKYYAAD---------TDVQVLGVDPNRKMEKYAQTAAVAA 171 (300)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~---------~~~~~~giD~s~~~~~~a~~~~~~~ 171 (300)
-+.+.++.+..++.+.+.. .+..++|+|.|+|.+...+++. ...++..|++|+...+.-++.++..
T Consensus 57 lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 57 LFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3455567777777777763 4678999999999999888762 2578999999999988888887654
No 285
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.11 E-value=0.029 Score=54.54 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCCCeEEEECCCCChhHHHhHh--------CC-----CceEEEEcCCH---HHHHHHH-----------HHHHH-----c
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA--------DT-----DVQVLGVDPNR---KMEKYAQ-----------TAAVA-----A 171 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--------~~-----~~~~~giD~s~---~~~~~a~-----------~~~~~-----~ 171 (300)
.+.-+|+|+|-|+|.......+ .+ ..+++++|..+ +.+..+- +.... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 3457999999999975554442 11 35899999643 3332221 11111 1
Q ss_pred CC-----CCC--CEEEEecccCc-CCCCCCcccEEEEc-ccccCcccH--HHHHHHHHHcccCCcEEEEEe
Q 022248 172 GL-----PLT--NFKFLQAVGEA-IPVSDASVDAVVGT-LVLCSVKDV--DMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 172 ~~-----~~~--~~~~~~~d~~~-~~~~~~~~D~v~~~-~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~ 231 (300)
++ ... ++++..+|+.+ ++--...+|+++.. ++...-+++ ..+++.+.++++|||.+...+
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 11 001 33456677654 23222569999974 333333443 578999999999999998754
No 286
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.10 E-value=0.011 Score=51.19 Aligned_cols=85 Identities=13% Similarity=0.181 Sum_probs=60.4
Q ss_pred HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--
Q 022248 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-- 189 (300)
Q Consensus 114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-- 189 (300)
++.+.++.+. .+++.++|.--|.|..+..+++. ++..++|+|.++.+++.|++++... .+++.++.+++.++.
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F~~l~~~ 84 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNFSNLDEY 84 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-GGGHHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccHHHHHHH
Confidence 3444555554 56789999999999999999974 5589999999999999998877544 258999999987753
Q ss_pred ---C-CCCcccEEEEc
Q 022248 190 ---V-SDASVDAVVGT 201 (300)
Q Consensus 190 ---~-~~~~~D~v~~~ 201 (300)
. .-..+|.|+..
T Consensus 85 l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 85 LKELNGINKVDGILFD 100 (310)
T ss_dssp HHHTTTTS-EEEEEEE
T ss_pred HHHccCCCccCEEEEc
Confidence 2 34689999964
No 287
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=96.07 E-value=0.31 Score=43.89 Aligned_cols=105 Identities=19% Similarity=0.280 Sum_probs=65.2
Q ss_pred CCCCeEEEECCCCCh----hHHHhHhC----CCceEEEEcC----CHHHHHHHHHHHHH----cCCCCCCEEEEe---cc
Q 022248 124 GKAKKVLEIGIGTGP----NLKYYAAD----TDVQVLGVDP----NRKMEKYAQTAAVA----AGLPLTNFKFLQ---AV 184 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~----~~~~l~~~----~~~~~~giD~----s~~~~~~a~~~~~~----~~~~~~~~~~~~---~d 184 (300)
.+..+|+|+|.|.|. +...|+.+ +..++|||+. +...++.+.+++.+ .|+ .++|.. .+
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv---~fef~~v~~~~ 185 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV---PFEFHPVVVES 185 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc---cEEEEecccCc
Confidence 356789999999993 45555543 4478999999 77778777776543 455 345544 23
Q ss_pred cCcC-----CCCCCcccEEEEcccccCccc-------HHHHHHHHHHcccCCcEEEEEe
Q 022248 185 GEAI-----PVSDASVDAVVGTLVLCSVKD-------VDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 185 ~~~~-----~~~~~~~D~v~~~~~l~~~~~-------~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.+.+ ...++..=+|-|.+.+|++.+ +...+-...+.|+|.-.+++..
T Consensus 186 ~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~ 244 (374)
T PF03514_consen 186 LEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQ 244 (374)
T ss_pred hhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEee
Confidence 3333 233444445556777788742 2334455666799995555543
No 288
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.05 E-value=0.024 Score=48.06 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=40.2
Q ss_pred HHHHHHHHhhc-C-CCCeEEEECCCCChhHHHhHhC---------CCceEEEEcCCHHHHHHHHHHHHH
Q 022248 113 GYKSQLFDNLR-G-KAKKVLEIGIGTGPNLKYYAAD---------TDVQVLGVDPNRKMEKYAQTAAVA 170 (300)
Q Consensus 113 ~~~~~~~~~~~-~-~~~~vLDiGcG~G~~~~~l~~~---------~~~~~~giD~s~~~~~~a~~~~~~ 170 (300)
.++........ + ...+|+|+|.|+|.++..+++. ...+++.||+|+.+.+.-++++..
T Consensus 4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 34444444443 2 2479999999999999998762 236899999999998888887654
No 289
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.05 E-value=0.013 Score=49.56 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=66.6
Q ss_pred HhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc----C-CCCCCEEE---EecccCcCCC-
Q 022248 120 DNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA----G-LPLTNFKF---LQAVGEAIPV- 190 (300)
Q Consensus 120 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~----~-~~~~~~~~---~~~d~~~~~~- 190 (300)
..+...+++|||+|||.|.............+...|.+...++.-.--.... + ...+.-.+ ......+.-+
T Consensus 111 ~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~ 190 (282)
T KOG2920|consen 111 AQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFN 190 (282)
T ss_pred hheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhh
Confidence 3445678999999999998887776555467888888877763211100000 0 00001111 1110001111
Q ss_pred CCC--cccEEEEcccccCcccHHHH-HHHHHHcccCCcEEEEEe
Q 022248 191 SDA--SVDAVVGTLVLCSVKDVDMT-LQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 191 ~~~--~~D~v~~~~~l~~~~~~~~~-l~~~~~~LkpgG~l~~~~ 231 (300)
..+ .||+|.+...++........ ......+++++|.+++..
T Consensus 191 ~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 191 HTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred hccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 113 79999998888887766665 667777788899888754
No 290
>PRK11524 putative methyltransferase; Provisional
Probab=96.01 E-value=0.028 Score=48.56 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHH
Q 022248 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA 170 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~ 170 (300)
.++..++.....++..|||.-||+|..+.+.. ..+-+++|+|++++..+.|++++..
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 45566666666789999999999998877655 4677999999999999999999753
No 291
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.97 E-value=0.11 Score=48.38 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCChhHHHhHhC----C-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-C----CCCc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD----T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V----SDAS 194 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~----~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~----~~~~ 194 (300)
+..+|.|..||+|.+.....+. . ...++|.|+++.....++.++--.++.. .+....+|...-| . ..+.
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-DANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-cccccccccccCCcccccCCccc
Confidence 5669999999999888777652 2 3679999999999999999877666542 3445555543333 2 3367
Q ss_pred ccEEEEccccc---Cc---------------------ccH-HHHHHHHHHcccCCcEEEEEeccc
Q 022248 195 VDAVVGTLVLC---SV---------------------KDV-DMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 195 ~D~v~~~~~l~---~~---------------------~~~-~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
||.|+++--.. +. ... ...++++...|+|||+..++-+..
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 99988632110 00 011 567899999999998777766444
No 292
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.92 E-value=0.048 Score=43.37 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=76.1
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCC--ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-------CCC
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-------VSD 192 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~--~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~ 192 (300)
++..|+|+|.-.|..+...+. ..+ .+|+++|++-..+.-+... .+++.|++++-.+.. ...
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-------~p~i~f~egss~dpai~eqi~~~~~ 141 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-------VPDILFIEGSSTDPAIAEQIRRLKN 141 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-------CCCeEEEeCCCCCHHHHHHHHHHhc
Confidence 678899999999877776664 233 7999999988766555443 268999999876643 223
Q ss_pred CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
+.--+.+|..+-|+.....+.++...++|.-|-++++.+-+
T Consensus 142 ~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 142 EYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred CCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence 33356667778888877888889999999999999997643
No 293
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.86 E-value=0.16 Score=45.21 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=65.8
Q ss_pred CCCeEEEECCCC-ChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc-c-Cc-CCCCC-CcccEE
Q 022248 125 KAKKVLEIGIGT-GPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-G-EA-IPVSD-ASVDAV 198 (300)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d-~-~~-~~~~~-~~~D~v 198 (300)
++.+|+=+|||. |.++..+++ ....+++.+|.++.-++.|++..... .+.....+ . .. ..... ..+|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-----~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-----VVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-----EeecCccccHHHHHHHHhCCCCCCEE
Confidence 444899999995 555566666 34578999999999999998853211 11111110 0 00 01112 369999
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK 236 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 236 (300)
+-... ....+..+.+.++|||.+.++......
T Consensus 243 ie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 95443 233678999999999999998866544
No 294
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.85 E-value=0.072 Score=48.15 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc-c-CcC-CC-CCCcccE
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-G-EAI-PV-SDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d-~-~~~-~~-~~~~~D~ 197 (300)
.++.+||.+|||. |..+..+++..+. +++++|.++...+.+++.. +. ..+.+...+ . ..+ .+ ....+|+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~--~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA--ETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc--EEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 4678999999987 8888888876665 5999999999888877642 11 111111111 1 001 11 2346999
Q ss_pred EEEcccc---------------cCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 198 VVGTLVL---------------CSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 198 v~~~~~l---------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+..-.- ....+....+.++.+.|+|+|.++....
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 9864321 1113345678999999999999999864
No 295
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.83 E-value=0.028 Score=46.48 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=39.7
Q ss_pred HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHH
Q 022248 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~ 166 (300)
.++.+++.....++..|||.-||+|..+.+.. ..+-+++|+|+++...+.|++
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 45555666666789999999999998887765 467799999999999998864
No 296
>PRK13699 putative methylase; Provisional
Probab=95.79 E-value=0.045 Score=45.56 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc
Q 022248 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA 171 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~ 171 (300)
.++..++.....++..|||.-||+|..+.+.. ..+..++|+|+++...+.+.++++..
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 34455555555788999999999998887765 46779999999999999999988654
No 297
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.68 E-value=0.018 Score=41.25 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=25.7
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCH
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR 158 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~ 158 (300)
+....+|||||+|.+..-|. ..+..-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~-~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILN-SEGYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHH-hCCCCcccccccc
Confidence 46789999999998776665 4577889999743
No 298
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.59 E-value=0.34 Score=42.48 Aligned_cols=121 Identities=16% Similarity=0.149 Sum_probs=74.3
Q ss_pred eEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEEEEcccc
Q 022248 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTLVL 204 (300)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l 204 (300)
+++|+-||.|.+...+.......+.++|+++.+.+..+.+. + ....+|+.++. ++. .+|+++...-.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~-------~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF-------P--EVICGDITEIDPSDLPK-DVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH-------T--EEEESHGGGCHHHHHHH-T-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc-------c--ccccccccccccccccc-cceEEEeccCC
Confidence 68999999999998887654456889999999999888886 2 67788887764 443 59999975433
Q ss_pred cCc---------ccHHH-H---HHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHh
Q 022248 205 CSV---------KDVDM-T---LQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISE 271 (300)
Q Consensus 205 ~~~---------~~~~~-~---l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (300)
..+ .|... + +-++.+.++|. +++.+++..-..... ....+.+.+.|++
T Consensus 72 Q~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~~l~~~~~-----------------~~~~~~i~~~l~~ 132 (335)
T PF00145_consen 72 QGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVPGLLSSKN-----------------GEVFKEILEELEE 132 (335)
T ss_dssp TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEGGGGTGGG-----------------HHHHHHHHHHHHH
T ss_pred ceEeccccccccccccchhhHHHHHHHhhccce--EEEecccceeecccc-----------------ccccccccccccc
Confidence 322 22221 2 34444555774 455565543211000 0112477888899
Q ss_pred cCCcEE
Q 022248 272 AGFSSV 277 (300)
Q Consensus 272 aGf~~v 277 (300)
.||.+.
T Consensus 133 lGY~v~ 138 (335)
T PF00145_consen 133 LGYNVQ 138 (335)
T ss_dssp TTEEEE
T ss_pred cceeeh
Confidence 998854
No 299
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.48 E-value=0.096 Score=46.05 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=75.0
Q ss_pred CCeEEEECCCCChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC-CCcccEEEEccc
Q 022248 126 AKKVLEIGIGTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV 203 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~ 203 (300)
..+|||.=+|+|.=++.++...+. +++.-|+|+.+++.++++++.+.. .+...+..|+..+-.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~--~~~~v~n~DAN~lm~~~~~~fd~IDi--- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG--EDAEVINKDANALLHELHRAFDVIDI--- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc--ccceeecchHHHHHHhcCCCccEEec---
Confidence 789999999999888877764443 899999999999999999988732 2455555676554322 367887753
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
..+-.+..++....+.++.||++.+.-
T Consensus 128 -DPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 -DPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred -CCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 334455667888888999999998853
No 300
>PRK13699 putative methylase; Provisional
Probab=95.46 E-value=0.05 Score=45.30 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=34.0
Q ss_pred EEEecccCcC--CCCCCcccEEEEc--cc--ccC-----c------ccHHHHHHHHHHcccCCcEEEEE
Q 022248 179 KFLQAVGEAI--PVSDASVDAVVGT--LV--LCS-----V------KDVDMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 179 ~~~~~d~~~~--~~~~~~~D~v~~~--~~--l~~-----~------~~~~~~l~~~~~~LkpgG~l~~~ 230 (300)
+++.+|..++ .++++++|+|+.. +. ... + .-....+.++.|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4566776553 4678888888864 10 000 0 11246789999999999988874
No 301
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.08 Score=47.88 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=69.8
Q ss_pred CCCCeEEEECCCCCh--hHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc--c--CcCCCC-CCcc
Q 022248 124 GKAKKVLEIGIGTGP--NLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV--G--EAIPVS-DASV 195 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~--~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d--~--~~~~~~-~~~~ 195 (300)
..+..++|+|.|.|. ++..+.. .....++.||.+..|........+...- .-..+... + ..+|.. .+.|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~---~g~~~v~~~~~~r~~~pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH---IGEPIVRKLVFHRQRLPIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh---cCchhccccchhcccCCCCcccce
Confidence 345678888887663 3333332 3456899999999999998887765110 00111111 1 123433 3569
Q ss_pred cEEEEcccccCcccHH---H-HHHHHHHcccCCcEEEEEecccCCC
Q 022248 196 DAVVGTLVLCSVKDVD---M-TLQEVRRVLKPGGIYLFVEHVAAKD 237 (300)
Q Consensus 196 D~v~~~~~l~~~~~~~---~-~l~~~~~~LkpgG~l~~~~~~~~~~ 237 (300)
|+|++.+.++++.+.. . .-....+..++||.+++++......
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g 321 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMG 321 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence 9999999999886542 2 2344556668999999998665443
No 302
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.25 Score=43.49 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=74.9
Q ss_pred CCCCeEEEECCCCChhHHHhHhC---C--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---------
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD---T--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------- 189 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~---~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------- 189 (300)
.++.+|||.+...|.-+.++.+. . ...+++-|.+..-+......++...- ++..+...++...|
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~--~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS--PNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC--cceeeecccceeccccccccCch
Confidence 58899999999999988888762 1 23899999999988888877754432 34555544443322
Q ss_pred CCCCcccEEEEc------ccccCccc-----------------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248 190 VSDASVDAVVGT------LVLCSVKD-----------------VDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 190 ~~~~~~D~v~~~------~~l~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
.+...||-|+|. ..+...++ ...++.+..++||+||.++.++...
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 234579999862 11211111 1357899999999999999987543
No 303
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.36 E-value=0.02 Score=48.67 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCChhHH-HhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLK-YYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~-~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.+..|+|+=.|.|+++. .+.......|+++|.++..++..++.++.+++. ++...+.+|-.. +-++...|-|.....
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-~r~~i~~gd~R~-~~~~~~AdrVnLGLl 271 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-DRCRITEGDNRN-PKPRLRADRVNLGLL 271 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-HHHHhhhccccc-cCccccchheeeccc
Confidence 55789999999999998 555556678999999999999999999887654 345555666433 335677888887553
Q ss_pred ccCcccHHHHHHHHHHcccC-Cc-EEEEEecccC
Q 022248 204 LCSVKDVDMTLQEVRRVLKP-GG-IYLFVEHVAA 235 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~Lkp-gG-~l~~~~~~~~ 235 (300)
.. -++-.--...+||| || .+-+-+.+..
T Consensus 272 PS----se~~W~~A~k~Lk~eggsilHIHenV~~ 301 (351)
T KOG1227|consen 272 PS----SEQGWPTAIKALKPEGGSILHIHENVKD 301 (351)
T ss_pred cc----cccchHHHHHHhhhcCCcEEEEeccccc
Confidence 33 33333455667777 44 4444444433
No 304
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.19 Score=44.42 Aligned_cols=123 Identities=12% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEEEEcc
Q 022248 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTL 202 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~ 202 (300)
..+++|+-||.|.+...+......-+.++|+++.+++.-+.+.. ...++..|...+. +....+|+++...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~-------~~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP-------HGDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC-------CCceeechHhhcChhhccccCCCEEEeCC
Confidence 46899999999999888765444457899999999888877752 2445666665443 1112799999765
Q ss_pred cccCc---------ccHH----HHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHH
Q 022248 203 VLCSV---------KDVD----MTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNI 269 (300)
Q Consensus 203 ~l~~~---------~~~~----~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (300)
-...+ .|.. ..+.++...++| .+++.+++..-. .. .....+++.+.|
T Consensus 76 PCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~-------~~-----------~~~~~~~i~~~L 135 (328)
T COG0270 76 PCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLL-------SS-----------KGQTFDEIKKEL 135 (328)
T ss_pred CCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHH-------hc-----------CchHHHHHHHHH
Confidence 44433 2332 235666666788 777777655321 10 112335888999
Q ss_pred HhcCCc
Q 022248 270 SEAGFS 275 (300)
Q Consensus 270 ~~aGf~ 275 (300)
++.||.
T Consensus 136 ~~~GY~ 141 (328)
T COG0270 136 EELGYG 141 (328)
T ss_pred HHcCCc
Confidence 999997
No 305
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.12 E-value=0.07 Score=49.63 Aligned_cols=97 Identities=21% Similarity=0.259 Sum_probs=63.6
Q ss_pred CCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----------------
Q 022248 125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA---------------- 187 (300)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---------------- 187 (300)
++.++|=+|+|. |..+..++...+..++++|.++..++.+++. +. +++..+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----Ga-----~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----GA-----EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC-----eEEeccccccccccccceeecCHHH
Confidence 568999999985 4555556666778899999999987776652 21 222222110
Q ss_pred -------CCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEE
Q 022248 188 -------IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 188 -------~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 230 (300)
++-.-..+|+|+..-.+..-+.+.-+.+++.+.+|||++++=+
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 1111256999987664544444445678899999999987743
No 306
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.07 E-value=0.028 Score=42.12 Aligned_cols=86 Identities=22% Similarity=0.291 Sum_probs=59.1
Q ss_pred CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C-CCCCcccEEEEcccccCcc
Q 022248 135 GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASVDAVVGTLVLCSVK 208 (300)
Q Consensus 135 G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~ 208 (300)
|.|.++..+++..+.+++++|.++.-++.+++. |. -.++..+-.++ . .....+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga----~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA----DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE----SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc----cccccccccccccccccccccccceEEEEecC-----
Confidence 457788888887779999999999988887653 21 12222221111 1 23357999986432
Q ss_pred cHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 209 DVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 209 ~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
....++....+|+++|.++++....
T Consensus 68 -~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 -SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2346799999999999999998665
No 307
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.00 E-value=0.25 Score=43.38 Aligned_cols=95 Identities=22% Similarity=0.328 Sum_probs=62.4
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCcccE
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~ 197 (300)
.++.+||..|+| .|..+..+++..+.++++++.++...+.+++ .+.. . ++...-... ....+.+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~--~--~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD--E--VLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC--E--EEcCCCcCHHHHHHHhcCCCceE
Confidence 456788888876 4777788887778889999999988777754 2221 1 111110000 123457999
Q ss_pred EEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+..... ...+.++.+.|+++|.++....
T Consensus 236 vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 236 IFDFVGT------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred EEECCCC------HHHHHHHHHHhhcCCEEEEECC
Confidence 8854211 2357889999999999998754
No 308
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.96 E-value=0.14 Score=45.41 Aligned_cols=142 Identities=14% Similarity=0.158 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHhhhhHhHHHHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHH
Q 022248 90 DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTA 167 (300)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~ 167 (300)
.-++++|..+- .+.|++.....+..+.+++. .++....|+|+|.|.+...++.. ....-+|+++.+..-+.+...
T Consensus 159 ~~L~~hYk~~s---s~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~ 235 (419)
T KOG3924|consen 159 AILNQHYKSFS---SETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELN 235 (419)
T ss_pred HHHHHhhcccc---ccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHH
Confidence 34444555432 25577777777788888776 67889999999999988888763 233566777655544444332
Q ss_pred -------HHHcCCCCCCEEEEecccCcCC---CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248 168 -------AVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA 235 (300)
Q Consensus 168 -------~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 235 (300)
.+..|-....+..+.+++.... .-....++|+++++...- +...-+.++..-+++|-+++-......
T Consensus 236 ~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp-~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 236 KEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDP-ELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHHHHHHHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecccCCH-HHHHhhHHHHhhCCCcceEeccccccc
Confidence 2233433346777777765432 123567888887766543 333335688888999999988765443
No 309
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.73 E-value=0.37 Score=42.30 Aligned_cols=120 Identities=17% Similarity=0.211 Sum_probs=71.1
Q ss_pred EEEECCCCChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEEEcccccC
Q 022248 129 VLEIGIGTGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTLVLCS 206 (300)
Q Consensus 129 vLDiGcG~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~l~~ 206 (300)
|+|+-||.|.+...+... +.+ +.++|+++.+.+..+.+.. . .++.+|+.++.. .-..+|+++...-...
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~-------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG-------N-KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC-------C-CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 689999999999888654 455 5679999999888877642 2 345567666532 1135899986533322
Q ss_pred c---------ccHH-HHHHHHHHcc---cCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcC
Q 022248 207 V---------KDVD-MTLQEVRRVL---KPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG 273 (300)
Q Consensus 207 ~---------~~~~-~~l~~~~~~L---kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 273 (300)
+ .|.. .++.++.+++ +|. +++++.+..- +.. ........+.+.|++.|
T Consensus 72 fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l-------~~~----------~~~~~~~~i~~~l~~~G 132 (315)
T TIGR00675 72 FSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGL-------VSH----------DKGRTFKVIIETLEELG 132 (315)
T ss_pred cchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHH-------Hhc----------ccchHHHHHHHHHHhCC
Confidence 2 2322 3444444444 664 6666654421 000 00011236777888889
Q ss_pred CcE
Q 022248 274 FSS 276 (300)
Q Consensus 274 f~~ 276 (300)
|.+
T Consensus 133 Y~v 135 (315)
T TIGR00675 133 YKV 135 (315)
T ss_pred CEE
Confidence 875
No 310
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.67 E-value=0.22 Score=43.98 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=37.4
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHH
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~ 167 (300)
+-..++|+|.|.|+++..+.-..+..|.+||-|....+.|++.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 4578999999999999999877899999999998888777663
No 311
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.65 E-value=1 Score=39.06 Aligned_cols=165 Identities=11% Similarity=0.056 Sum_probs=99.0
Q ss_pred HHHHHHHHhhcCC-CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEecccCcCC-
Q 022248 113 GYKSQLFDNLRGK-AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIP- 189 (300)
Q Consensus 113 ~~~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~~- 189 (300)
++..+.+...... -..|+-+|||--.-...+-...+..|+-+|. |++++.=++.+.+.+.. +.+..++..|+.+-.
T Consensus 79 r~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw 157 (297)
T COG3315 79 RYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDW 157 (297)
T ss_pred HHHHHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccch
Confidence 3444444433323 4789999999754443333233578888887 55666666667766543 337889999997432
Q ss_pred --------CCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCC--ch--HHHHHHHhhhh-hh-h
Q 022248 190 --------VSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKD--GT--FLKFWQNVVDP-LQ-Q 253 (300)
Q Consensus 190 --------~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~--~~~~~~~~~~~-~~-~ 253 (300)
+..+.-=++++-.++.+++.. +.++..|...+.||-.+++........ .. ..... ..... .. .
T Consensus 158 ~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 236 (297)
T COG3315 158 PQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARK-TMRGEDLDRG 236 (297)
T ss_pred HHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhh-hccccccccc
Confidence 334555678888888888643 578999999999998888865311100 00 00000 00000 00 0
Q ss_pred hhcCCcccchHHHHHHHhcCCcEEEE
Q 022248 254 IVSDGCHLTRQTGNNISEAGFSSVEL 279 (300)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~aGf~~v~~ 279 (300)
..........++...|.+.||..+..
T Consensus 237 e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 237 ELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred cceeccCCHHHHHHHHHhcCEEEEec
Confidence 01112234579999999999997766
No 312
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=2 Score=37.15 Aligned_cols=166 Identities=10% Similarity=0.094 Sum_probs=90.9
Q ss_pred HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC---CCceEEEEcCCHHHHHHHHHHHHHcC-----------------
Q 022248 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAG----------------- 172 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~~giD~s~~~~~~a~~~~~~~~----------------- 172 (300)
..+..++... .....|+.+|||.-.+...|... ....++=||.++........+.+..-
T Consensus 76 ~~v~~Fl~~~-~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~ 154 (335)
T KOG2918|consen 76 HAVRAFLEQT-DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSG 154 (335)
T ss_pred HHHHHHHHhc-CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCc
Confidence 3344444442 35678999999999888888763 34678888888777666622111000
Q ss_pred --CCCCCEEEEecccCcCC----------CCCCcccEEEEcccccCcccHH--HHHHHHHHcccCCcEEEEEecccCCCc
Q 022248 173 --LPLTNFKFLQAVGEAIP----------VSDASVDAVVGTLVLCSVKDVD--MTLQEVRRVLKPGGIYLFVEHVAAKDG 238 (300)
Q Consensus 173 --~~~~~~~~~~~d~~~~~----------~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~ 238 (300)
+..++...+.+|+.++. ...+-.-++++-.+|.+++... ..++.+.... +.+.+++.+... +..
T Consensus 155 ~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~-~~D 232 (335)
T KOG2918|consen 155 TDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQIN-PND 232 (335)
T ss_pred ceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccC-CCC
Confidence 00112333444443221 1112223344444555664332 2344433333 566777777655 344
Q ss_pred hHHHHHHHhhhhhhhhhc--CCcccchHHHHHHHhcCCcEEEEee
Q 022248 239 TFLKFWQNVVDPLQQIVS--DGCHLTRQTGNNISEAGFSSVELGN 281 (300)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~aGf~~v~~~~ 281 (300)
.+...+...+...+-..+ ..+.+.+..+..+.++||+.+.+.+
T Consensus 233 ~Fg~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~D 277 (335)
T KOG2918|consen 233 RFGKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVD 277 (335)
T ss_pred hHHHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhh
Confidence 455555544443322222 2466788999999999999877754
No 313
>PTZ00357 methyltransferase; Provisional
Probab=94.47 E-value=0.76 Score=43.96 Aligned_cols=99 Identities=17% Similarity=0.280 Sum_probs=63.3
Q ss_pred CeEEEECCCCChhHHHhHh-----CCCceEEEEcCCHHHHHHHHHHH-HHcCCC------CCCEEEEecccCcCCCCC--
Q 022248 127 KKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAA-VAAGLP------LTNFKFLQAVGEAIPVSD-- 192 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~-----~~~~~~~giD~s~~~~~~a~~~~-~~~~~~------~~~~~~~~~d~~~~~~~~-- 192 (300)
..|+-+|+|-|-+.....+ ....++++|+-++.++.....+. ....+. ...|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 3689999999987766554 24578999999966544444332 222332 136899999998874321
Q ss_pred ---------CcccEEEEcccccCccc---HHHHHHHHHHcccC----CcE
Q 022248 193 ---------ASVDAVVGTLVLCSVKD---VDMTLQEVRRVLKP----GGI 226 (300)
Q Consensus 193 ---------~~~D~v~~~~~l~~~~~---~~~~l~~~~~~Lkp----gG~ 226 (300)
+.+|+||+= .|-.+.| -.+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 379999961 2222222 14677777777776 775
No 314
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.28 E-value=0.17 Score=42.57 Aligned_cols=97 Identities=22% Similarity=0.279 Sum_probs=61.8
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCcccE
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~ 197 (300)
.++.+||..|+|. |..+..+++..+.++++++.++...+.+++. +.. .++...-... ....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD----HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc----eeccCCcCCHHHHHHHhcCCCCCE
Confidence 4678999999985 6666667766778999999998776666432 211 1111100000 112357999
Q ss_pred EEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
++....-. ..+..+.+.|+++|.++......
T Consensus 205 vi~~~~~~------~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 205 VIDAVGGP------ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred EEECCCCH------HHHHHHHHhcccCCEEEEEccCC
Confidence 98643211 34677888999999999876443
No 315
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.22 E-value=1.1 Score=35.30 Aligned_cols=128 Identities=11% Similarity=0.058 Sum_probs=74.3
Q ss_pred ECCCCChhHHHhHhC-C-CceEEEE--cCCHHHHHHHH---HHHHHcCCCCCCEEEEecccCcCC----CCCCcccEEEE
Q 022248 132 IGIGTGPNLKYYAAD-T-DVQVLGV--DPNRKMEKYAQ---TAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG 200 (300)
Q Consensus 132 iGcG~G~~~~~l~~~-~-~~~~~gi--D~s~~~~~~a~---~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~ 200 (300)
||=|.=.++..|++. . ...+++. |..+...+... .+++...-. .-......|+.++. ...+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCcccccccccCCcCCEEEE
Confidence 555555667777763 2 4445544 54444443332 333322110 11223555776653 35689999998
Q ss_pred cccccC-----c-cc-------HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHH
Q 022248 201 TLVLCS-----V-KD-------VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGN 267 (300)
Q Consensus 201 ~~~l~~-----~-~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (300)
++-... - .+ ...+++.+.++|+++|.+.+.-....+- ..| .+.+
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py----~~W-------------------~i~~ 138 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY----DSW-------------------NIEE 138 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC----ccc-------------------cHHH
Confidence 763332 0 01 1357899999999999999976544330 001 5667
Q ss_pred HHHhcCCcEEEEeeec
Q 022248 268 NISEAGFSSVELGNAF 283 (300)
Q Consensus 268 ~l~~aGf~~v~~~~~~ 283 (300)
+-+++||..++.....
T Consensus 139 lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 139 LAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHhcCCEEEEEecCC
Confidence 8888999987776443
No 316
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.11 E-value=0.2 Score=44.47 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=59.6
Q ss_pred CCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEecccCcCCCCCCcccEEEEc
Q 022248 125 KAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
++.+||=.||| .|.++.++++..+. +++++|.++..++.+++. |.. .+ .....+..+.....+.+|+|+-.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~~~g~~D~vid~ 242 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GAD--KLVNPQNDDLDHYKAEKGYFDVSFEV 242 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCc--EEecCCcccHHHHhccCCCCCEEEEC
Confidence 57788888874 45566666766666 699999999888777652 321 11 11111111111112458998854
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.. . ...+....+.|++||+++++..
T Consensus 243 ~G-----~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 243 SG-----H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CC-----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 32 1 2356788899999999999874
No 317
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.08 E-value=0.43 Score=39.54 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=68.5
Q ss_pred cCCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHH----HHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCC
Q 022248 123 RGKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRK----MEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDA 193 (300)
Q Consensus 123 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~----~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~ 193 (300)
..++.+||-+|.+.|....++.+ .+..-|++++.|+. .+.+|+++ +|+.-+..|+.... ..-+
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--------tNiiPIiEDArhP~KYRmlVg 225 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--------TNIIPIIEDARHPAKYRMLVG 225 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--------CCceeeeccCCCchheeeeee
Confidence 36899999999999998888876 36678999998874 44444443 57877888875431 1123
Q ss_pred cccEEEEcccccCcccHH-HHHHHHHHcccCCcEEEEEeccc
Q 022248 194 SVDAVVGTLVLCSVKDVD-MTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
-+|+|++.- .-+|.. -+.-+....||+||.++++-...
T Consensus 226 mVDvIFaDv---aqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 226 MVDVIFADV---AQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred eEEEEeccC---CCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 567666532 113332 24556778899999999976443
No 318
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.71 E-value=1.6 Score=35.59 Aligned_cols=103 Identities=19% Similarity=0.143 Sum_probs=65.6
Q ss_pred CCCeEEEECCCCCh--hHHHhH---hCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcCCCCCCcccEE
Q 022248 125 KAKKVLEIGIGTGP--NLKYYA---ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAV 198 (300)
Q Consensus 125 ~~~~vLDiGcG~G~--~~~~l~---~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v 198 (300)
..+.|+++.|+.|. .+..|+ ++.+.+++.|-+.+.-+...++.+...++. +.++|+.++. +.+--.-...|++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS-DVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc-ccceEEecCCHHHHHhhccCCCEE
Confidence 55789999766442 344443 257789999999988888888888877775 4679988874 3322122468888
Q ss_pred EEcccccCcccHHHHHHHHHHcc--cCCcEEEEEeccc
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVL--KPGGIYLFVEHVA 234 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~L--kpgG~l~~~~~~~ 234 (300)
+...- .+++.+++.+.+ .|.|-+++..+..
T Consensus 120 vVDc~------~~d~~~~vl~~~~~~~~GaVVV~~Na~ 151 (218)
T PF07279_consen 120 VVDCK------REDFAARVLRAAKLSPRGAVVVCYNAF 151 (218)
T ss_pred EEeCC------chhHHHHHHHHhccCCCceEEEEeccc
Confidence 86542 222233444444 4567777766543
No 319
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=3.6 Score=34.43 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=70.2
Q ss_pred CCCeEEEECCCCChhHHHhHhC-----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----CCCCCCcc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----IPVSDASV 195 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~ 195 (300)
.+...+|+|+|+..-+..|.+. ....++.||+|...++...+.+...... -.+.-+++|.+. +| ..+.=
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-l~v~~l~~~~~~~La~~~-~~~~R 155 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-LEVNALCGDYELALAELP-RGGRR 155 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-CeEeehhhhHHHHHhccc-CCCeE
Confidence 5789999999999877776652 3368999999999988776665544322 135556666643 23 11222
Q ss_pred cEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEe
Q 022248 196 DAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 196 D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
=.++....+-++. +...++..+...|+||-++++-.
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 2233345555552 34578999999999999999854
No 320
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.46 E-value=0.2 Score=40.71 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=60.0
Q ss_pred CCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHH-------------------------------
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAV------------------------------- 169 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~------------------------------- 169 (300)
..+.++.|-.||.|+++.-+.- ..-..++|-|+++.+++.|++++.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 4567899999999988766532 223579999999999999998554
Q ss_pred ----------HcCCCCCCEEEEecccCcCC-----CCCCcccEEEEcc----cccCcc-----cHHHHHHHHHHcccCCc
Q 022248 170 ----------AAGLPLTNFKFLQAVGEAIP-----VSDASVDAVVGTL----VLCSVK-----DVDMTLQEVRRVLKPGG 225 (300)
Q Consensus 170 ----------~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~----~l~~~~-----~~~~~l~~~~~~LkpgG 225 (300)
..|-. ......++|+.+.. ......|+|+... ...|-. ....+|..++.+|-+++
T Consensus 130 sA~RL~~~l~~~g~~-~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 130 SADRLRERLAAEGGD-EPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHTTSS---EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHhcCCC-CchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 11111 23566777765521 1223469988632 111211 13578999999995566
Q ss_pred EEEEEe
Q 022248 226 IYLFVE 231 (300)
Q Consensus 226 ~l~~~~ 231 (300)
++.+++
T Consensus 209 VV~v~~ 214 (246)
T PF11599_consen 209 VVAVSD 214 (246)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 666644
No 321
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.34 E-value=0.084 Score=39.40 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=48.0
Q ss_pred CEEEEecccCc-CCCCCCcccEEEEcc-cccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhh
Q 022248 177 NFKFLQAVGEA-IPVSDASVDAVVGTL-VLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQ 252 (300)
Q Consensus 177 ~~~~~~~d~~~-~~~~~~~~D~v~~~~-~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (300)
.+++..+|+.+ ++--+..||+|+... +...-+++ ..+++++.++++|||.+.....
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~-------------------- 91 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS-------------------- 91 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec--------------------
Confidence 44556667644 232237899998753 33322333 5789999999999998877441
Q ss_pred hhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248 253 QIVSDGCHLTRQTGNNISEAGFSSVELGNA 282 (300)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 282 (300)
...+++.|.++||++.+....
T Consensus 92 ---------a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 92 ---------AGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp ---------BHHHHHHHHHCTEEEEEEE-S
T ss_pred ---------hHHHHHHHHHcCCEEEEcCCC
Confidence 126789999999998766533
No 322
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.30 E-value=0.083 Score=45.90 Aligned_cols=108 Identities=22% Similarity=0.123 Sum_probs=77.9
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHH-------HHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEK-------YAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASV 195 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~-------~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 195 (300)
.++.-|+|--.|||.++...+ +.|+.++|.||+-.++. ..+.+++..+....-+.+..+|...-++ ....|
T Consensus 207 ~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred CCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence 688999999999999887776 46889999999998887 2355666666543445677888877664 35689
Q ss_pred cEEEEcc------------------------cccCccc---------HHHHHHHHHHcccCCcEEEEEec
Q 022248 196 DAVVGTL------------------------VLCSVKD---------VDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 196 D~v~~~~------------------------~l~~~~~---------~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|.|+|.- -..|.+. ....+.-..+.|.-||++++--+
T Consensus 286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 9999831 0112221 13457778899999999998654
No 323
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.29 E-value=1.3 Score=32.20 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=55.1
Q ss_pred CCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEEEEcccccC
Q 022248 134 IGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVGTLVLCS 206 (300)
Q Consensus 134 cG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~l~~ 206 (300)
||.|.++..+++ ..+..++.+|.+++.++.+++. .+.++.+|..+.. ..-+..|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~---------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~--- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE---------GVEVIYGDATDPEVLERAGIEKADAVVILTD--- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------TSEEEES-TTSHHHHHHTTGGCESEEEEESS---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc---------ccccccccchhhhHHhhcCccccCEEEEccC---
Confidence 667778888776 3445899999999988887754 3678889886532 22356787776432
Q ss_pred cccH-HHHHHHHHHcccCCcEEEEEe
Q 022248 207 VKDV-DMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 207 ~~~~-~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.+. ...+....+-+.|...+++..
T Consensus 72 -~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 72 -DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp -SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred -CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 122 224455666677887777754
No 324
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=93.03 E-value=0.26 Score=40.96 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=47.2
Q ss_pred CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC--CC-----CCCEEEEecccCc-CCCCCCcccEE
Q 022248 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG--LP-----LTNFKFLQAVGEA-IPVSDASVDAV 198 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~--~~-----~~~~~~~~~d~~~-~~~~~~~~D~v 198 (300)
.+|||.-+|-|.-+.-++. .+.+|++++-|+.+....+.-++... .. ..+++++.+|..+ +..++++||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4899999999998888875 47799999999987766665443321 11 1378999999876 45567899999
Q ss_pred EEcccc
Q 022248 199 VGTLVL 204 (300)
Q Consensus 199 ~~~~~l 204 (300)
.+.=.+
T Consensus 156 Y~DPMF 161 (234)
T PF04445_consen 156 YFDPMF 161 (234)
T ss_dssp EE--S-
T ss_pred EECCCC
Confidence 985433
No 325
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.98 E-value=1.3 Score=38.57 Aligned_cols=99 Identities=19% Similarity=0.152 Sum_probs=65.0
Q ss_pred CCCCeEEEECCCC-ChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc--CcC------CCCCC
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG--EAI------PVSDA 193 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~~~------~~~~~ 193 (300)
+.+.+||=+|+|. |.++...++ ....+++.+|+++..++.|++ + |. +.+....... ..+ .....
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga--~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GA--TVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CC--eEEeeccccccHHHHHHHHHhhcccc
Confidence 5788999999995 555555555 355689999999999999998 3 21 1222222111 110 12335
Q ss_pred cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
.+|+.+-...++ ..++.....+++||.++++.+..
T Consensus 242 ~~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 242 QPDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred CCCeEEEccCch------HHHHHHHHHhccCCEEEEeccCC
Confidence 588888655443 34677788899999988887654
No 326
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.79 E-value=0.099 Score=47.62 Aligned_cols=102 Identities=19% Similarity=0.146 Sum_probs=77.7
Q ss_pred CCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEE
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAV 198 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v 198 (300)
++.+|||.=|++|.-++..+.. ...++++-|.++..++..+++++.++.. +.++....|+..+ +-....||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-DIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-hhcccccchHHHHHHhccccccccceE
Confidence 5678999999999888877763 3457999999999999999999887654 4566666676543 2335789998
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
-. ..+.....+|....+.++.||.|.+..
T Consensus 188 DL----DPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DL----DPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ec----CCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 75 233344567888999999999999854
No 327
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.66 E-value=0.5 Score=40.76 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=70.7
Q ss_pred CCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
++.+|.=||.|. |..+..++-..++.|+.+|.|..-+++....+. .++...-.+...+...-...|+||..-.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~------~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG------GRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC------ceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence 345677788774 556666666788999999999988877766542 3566665555444333357899997544
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEE
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~ 230 (300)
+--...+.-+.+++...+|||++++=+
T Consensus 241 IpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 241 IPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 444456677889999999999988754
No 328
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.63 E-value=1.4 Score=37.04 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=60.3
Q ss_pred CCCeEEEECCCCChhHHHhH---hC---CCceEEEEcCCH--------------------------HHHHHHHHHHHHcC
Q 022248 125 KAKKVLEIGIGTGPNLKYYA---AD---TDVQVLGVDPNR--------------------------KMEKYAQTAAVAAG 172 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~---~~---~~~~~~giD~s~--------------------------~~~~~a~~~~~~~~ 172 (300)
-++.|+|.||-.|..+..++ +. .+-++++.|.-+ ..++..++++...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 45789999999997665442 21 344577776321 12333444444445
Q ss_pred CCCCCEEEEecccCc-CC-CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 173 LPLTNFKFLQAVGEA-IP-VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 173 ~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
+..+++.++.+.+.+ +| .+.+.+-++.+-. .........|..++..|.|||++++-+...
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 444689999999854 44 2334444444332 122345678999999999999999977544
No 329
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.55 E-value=1.1 Score=39.34 Aligned_cols=94 Identities=21% Similarity=0.252 Sum_probs=59.3
Q ss_pred CCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc---cCcCCCCCCcccEEE
Q 022248 125 KAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV---GEAIPVSDASVDAVV 199 (300)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~D~v~ 199 (300)
++.+||-.|||. |..+..+++..+. .+++++.++...+.+++. +.. .++... ...+....+.+|+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~----~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD----ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC----EEEcCCchhhhhhhccCCCccEEE
Confidence 577888888765 6666777776676 799999988877755442 221 112111 111211224589998
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
..... ...++.+.+.|+++|+++....
T Consensus 237 d~~g~------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 237 EASGA------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred ECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence 64321 2346888999999999998753
No 330
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.38 E-value=0.84 Score=39.81 Aligned_cols=88 Identities=17% Similarity=0.069 Sum_probs=56.0
Q ss_pred CCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 125 KAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
++.++|=+||| .|.++.++++..+.+ ++++|.++..++.+... . ++ |..+. ....+|+|+-..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-------~i--~~~~~--~~~g~Dvvid~~ 208 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-------VL--DPEKD--PRRDYRAIYDAS 208 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-------cc--Chhhc--cCCCCCEEEECC
Confidence 46678888875 566777777755665 67789888766655431 1 11 11110 134689988543
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
.- ...+..+.+.|+++|+++++...
T Consensus 209 G~------~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 209 GD------PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred CC------HHHHHHHHHhhhcCcEEEEEeec
Confidence 21 23467888999999999987753
No 331
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.34 E-value=0.95 Score=40.26 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=59.3
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcC---CHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEE
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDP---NRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~---s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 199 (300)
.++.+||=+|+| .|.++.++++..+.++++++. ++.-++.+++ .|.. .+.....+..+.. ..+.+|+|+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~--~v~~~~~~~~~~~-~~~~~d~vi 243 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT--YVNSSKTPVAEVK-LVGEFDLII 243 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE--EecCCccchhhhh-hcCCCCEEE
Confidence 356788888885 356677777767778999986 5666555543 2321 1111111111101 124689888
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
-...- ...+.+..+.|++||.++++....
T Consensus 244 d~~g~------~~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 244 EATGV------PPLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred ECcCC------HHHHHHHHHHccCCcEEEEEecCC
Confidence 64321 225688899999999999876543
No 332
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.77 E-value=1.7 Score=38.43 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=57.6
Q ss_pred CCCCeEEEECCC-CChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEE
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 200 (300)
.++.+||=+||| .|.++..+++. .+.+++++|.++.-++.+++ .+ ....+ ..+. .+..+|+|+-
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~----~~~~~----~~~~-~~~g~d~viD 228 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD----ETYLI----DDIP-EDLAVDHAFE 228 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC----ceeeh----hhhh-hccCCcEEEE
Confidence 467899999985 34445555553 35689999999887777754 11 11111 1111 1124898885
Q ss_pred cccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.-.-. .....+....+.|++||+++++..
T Consensus 229 ~~G~~---~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 229 CVGGR---GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred CCCCC---ccHHHHHHHHHhCcCCcEEEEEee
Confidence 33210 123467888999999999998774
No 333
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.71 E-value=1.8 Score=38.15 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=58.9
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
.++.+||=.|+| .|.++..+++..+..+++++.++.-.+.+++. |.. . ++ +..+. ..+.+|+++...
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----Ga~--~--vi--~~~~~--~~~~~d~~i~~~ 231 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----GAA--S--AG--GAYDT--PPEPLDAAILFA 231 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----CCc--e--ec--ccccc--CcccceEEEECC
Confidence 467889988864 44555666666778899999998877766553 321 1 11 11111 124588766433
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.. ...+....+.|++||++++...
T Consensus 232 ~~------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 232 PA------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred Cc------HHHHHHHHHhhCCCcEEEEEec
Confidence 21 2357888899999999998775
No 334
>PRK10458 DNA cytosine methylase; Provisional
Probab=91.31 E-value=2.8 Score=38.87 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=34.0
Q ss_pred CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHH
Q 022248 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAA 168 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~ 168 (300)
..+++|+-||.|.+...+.......+.++|+++.+.+.-+.+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 4689999999999988886544445788999998877776654
No 335
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.10 E-value=1.6 Score=37.37 Aligned_cols=95 Identities=21% Similarity=0.250 Sum_probs=57.5
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-cc-CcC-C-CCCCcccE
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VG-EAI-P-VSDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~-~~~-~-~~~~~~D~ 197 (300)
.++.+||=+|+| .|.++..+++..+.. ++++|.++.-++.+++. +.. .++.. +. ..+ . .....+|+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~----~~i~~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT----ALAEPEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc----EecCchhhHHHHHHHhCCCCCCE
Confidence 367788888874 344555566656665 89999988877766553 221 11110 10 000 0 12245898
Q ss_pred EEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+-... ....+....+.|+|+|++++...
T Consensus 191 vid~~G------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 191 ALEFSG------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred EEECCC------ChHHHHHHHHHhcCCCEEEEecc
Confidence 885321 12356788899999999998874
No 336
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=90.82 E-value=1.1 Score=40.95 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-------CCCCCCcc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-------IPVSDASV 195 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~~~ 195 (300)
..+..+|-+|-|.|.+...+.. .+..+++++++.+.+++.|++.+.-..- .+..+...|... -.-.+..|
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~--~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS--DRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh--hhhhhhHhhchHHHHHHhhccccccCC
Confidence 3567899999999998888755 4668999999999999999987532211 122222233211 11256789
Q ss_pred cEEEEcc-c--ccCc--cc----HHHHHHHHHHcccCCcEEEEEeccc
Q 022248 196 DAVVGTL-V--LCSV--KD----VDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 196 D~v~~~~-~--l~~~--~~----~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
|++...- . .+.+ +. ...++..+..+|.|.|.+++--.++
T Consensus 372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 9998521 1 2222 11 1457899999999999998754333
No 337
>PRK11524 putative methyltransferase; Provisional
Probab=90.50 E-value=0.32 Score=42.01 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=38.0
Q ss_pred CEEEEecccCcC--CCCCCcccEEEEc--ccc--c------------CcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 177 NFKFLQAVGEAI--PVSDASVDAVVGT--LVL--C------------SVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 177 ~~~~~~~d~~~~--~~~~~~~D~v~~~--~~l--~------------~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+..++++|..+. .+++++||+|++. +.+ . +..-....+.++.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 456788888664 4667899999983 211 0 00112468899999999999999864
No 338
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.16 E-value=2.7 Score=37.42 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=59.1
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC-cC-C-CCCCcccEE
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE-AI-P-VSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~-~~-~-~~~~~~D~v 198 (300)
.++.+||=.|+| .|.++.++++..+. +++++|.++...+.+++. +.. .-+.....+.. .+ . .....+|+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~-~~i~~~~~~~~~~i~~~~~~~g~d~v 249 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GAT-HTVNSSGTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc-eEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence 467889988874 34556666766676 499999999887777542 321 00111111110 00 0 122358988
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
+-.-. . ...+....+.|++||+++++...
T Consensus 250 id~~g-----~-~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 250 IDAVG-----R-PETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred EECCC-----C-HHHHHHHHHHhccCCEEEEECCC
Confidence 85322 1 23467778899999999987753
No 339
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.03 E-value=14 Score=33.33 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=69.5
Q ss_pred CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccC
Q 022248 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS 206 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 206 (300)
.+||=++-.-|.++..++.... . ...| |--.-...+++++.+++..+.+++.... ..+| +.+|+|+... .-.
T Consensus 46 ~~~~i~nd~fGal~~~l~~~~~-~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~~-~~~~---~~~d~vl~~~-PK~ 117 (378)
T PRK15001 46 GPVLILNDAFGALSCALAEHKP-Y-SIGD-SYISELATRENLRLNGIDESSVKFLDST-ADYP---QQPGVVLIKV-PKT 117 (378)
T ss_pred CCEEEEcCchhHHHHHHHhCCC-C-eeeh-HHHHHHHHHHHHHHcCCCcccceeeccc-cccc---CCCCEEEEEe-CCC
Confidence 3799999999999999985322 1 2234 2223334456677777764456555332 2232 4589888643 111
Q ss_pred cccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh
Q 022248 207 VKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD 249 (300)
Q Consensus 207 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 249 (300)
..-.+..+..+..+|.||+.+++.+....-.......+.+.+.
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~~~k~i~~~~~~~~~k~l~ 160 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLG 160 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEecCCCcHHHHHHHHHHhC
Confidence 2233556888899999999988777555443334444544443
No 340
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.91 E-value=3.8 Score=36.04 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=57.8
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CCCCcccEEE
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~v~ 199 (300)
.++.+||=+|+| .|.++..+++..+.+ ++++|.++...+.+++. +.. .-+.....+.+.+ . .....+|+|+
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~-~~i~~~~~~~~~~~~~~~~~~~d~vi 236 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD-FVINSGQDDVQEIRELTSGAGADVAI 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC-EEEcCCcchHHHHHHHhCCCCCCEEE
Confidence 457788888764 344555566666777 99999998877776542 321 0011101111111 1 1224699998
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
-... ....+....+.|+++|.+++....
T Consensus 237 d~~g------~~~~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 237 ECSG------NTAARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred ECCC------CHHHHHHHHHHhhcCCEEEEEcCC
Confidence 5321 122456778899999999987643
No 341
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=89.32 E-value=0.47 Score=42.58 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=52.9
Q ss_pred hcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc
Q 022248 122 LRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185 (300)
Q Consensus 122 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~ 185 (300)
+-.++..|.|+-||.|-+...++.+ +..|++-|.++++++..+.+++-+.+...+++.+..|+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 4468889999999999999888754 58999999999999999999887777655577776665
No 342
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.12 E-value=2.6 Score=36.85 Aligned_cols=95 Identities=21% Similarity=0.213 Sum_probs=59.0
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccE
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~ 197 (300)
.++.+||-+|+| .|..+..+++..+.+ +++++.++...+.+++. +.. .++..+-... ....+.+|+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~~~~~~~~~~vd~ 229 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT----ETVDPSREDPEAQKEDNPYGFDV 229 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe----EEecCCCCCHHHHHHhcCCCCcE
Confidence 466789988864 355666666666766 88999988877766432 221 1222111110 113356999
Q ss_pred EEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
++.... ....+.++.+.|+++|+++....
T Consensus 230 v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 230 VIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred EEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 996421 12356888899999999988764
No 343
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.04 E-value=3.1 Score=36.38 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=59.5
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~ 201 (300)
.++.+||-.|+| .|..+..+++..+.++++++.++...+.+++. +.. .++...-.... ...+.+|+++..
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~~~~~~~~d~vi~~ 232 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD----EVVDSGAELDEQAAAGGADVILVT 232 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc----EEeccCCcchHHhccCCCCEEEEC
Confidence 456788888886 66666667776788999999999887776432 211 11111100000 012468988854
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
..- ...+..+.+.|+++|.++....
T Consensus 233 ~~~------~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 233 VVS------GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred CCc------HHHHHHHHHhcccCCEEEEECC
Confidence 211 2246788899999999998753
No 344
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.02 E-value=0.86 Score=40.98 Aligned_cols=101 Identities=19% Similarity=0.197 Sum_probs=54.5
Q ss_pred CCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
++.+|+=+|+| .|..+...+...+.+++.+|.++..++.+.... + ..+.....+.+.+.-.-..+|+|+..-.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g---~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G---GRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C---ceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 45679999887 445555555556779999999887665554432 1 1111111111111111146899997532
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
....+.+.-+.+++.+.++||++++-+.
T Consensus 240 ~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 240 IPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 2111111112366667789998777643
No 345
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.00 E-value=0.77 Score=41.29 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=48.8
Q ss_pred CCEEEEecccCcC--CCCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecc
Q 022248 176 TNFKFLQAVGEAI--PVSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 176 ~~~~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
++++++.+++.+. ..+++++|.++....+.++++. .+.++++.+.++|||++++=...
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 6899999998774 2467999999999999999653 57899999999999999996543
No 346
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.94 E-value=2.2 Score=38.27 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=58.8
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----C-CCCCCccc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I-PVSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~-~~~~~~~D 196 (300)
.++.+||=.|+| .|.++..+++..+. +++++|.++.-++.+++. +.. .++...-++ + ....+.+|
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~----~~i~~~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT----ATVNAGDPNAVEQVRELTGGGVD 261 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc----eEeCCCchhHHHHHHHHhCCCCC
Confidence 456778888874 34556666666676 699999999887777542 321 111111111 1 01123689
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
+|+-... ....+....+.|+++|.+++....
T Consensus 262 ~vid~~G------~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 262 YAFEMAG------SVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred EEEECCC------ChHHHHHHHHHHhcCCEEEEEccC
Confidence 9985321 123567788899999999987643
No 347
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.80 E-value=3.5 Score=36.64 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=61.8
Q ss_pred CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-ccCc-C-CCCCCcccEE
Q 022248 124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEA-I-PVSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~~D~v 198 (300)
.++.+||=.|+ |.|.++.++++..+.++++++.++...+.+++. .|.. .-+..... +... + ....+.+|+|
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~-~vi~~~~~~~~~~~i~~~~~~gvD~v 232 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD-EAFNYKEEPDLDAALKRYFPEGIDIY 232 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC-EEEECCCcccHHHHHHHHCCCCcEEE
Confidence 46788988887 477888888887788999999888776666532 2321 01111111 1111 1 1112468988
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+-... ...+....+.|+++|+++++..
T Consensus 233 ~d~vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 233 FDNVG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred EECCC-------HHHHHHHHHHhccCCEEEEECc
Confidence 85322 1356888999999999998764
No 348
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=88.60 E-value=4.5 Score=35.50 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=60.3
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEeccc-CcC--CCCCCcccEE
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVG-EAI--PVSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~-~~~--~~~~~~~D~v 198 (300)
.++.+||-.|+|. |..+..+++..+.+++++..+++..+.+++. +.. .+ .....+. +.+ ...+..+|++
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~--~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GAD--DTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCC--EEecCcccCHHHHHHHHhCCCCCCEE
Confidence 4677899888763 6677777777788999998888777766432 211 11 1111111 011 0133568999
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+....- ...+.++.+.|+++|.++....
T Consensus 232 ld~~g~------~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 232 IDATGN------PASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred EECCCC------HHHHHHHHHHHhcCCEEEEEcC
Confidence 864211 2346888999999999987653
No 349
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=88.59 E-value=4.2 Score=34.65 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=70.9
Q ss_pred CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CC-CCCCcccEEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IP-VSDASVDAVVG 200 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~ 200 (300)
..++.|+-+|- .-..+.+++- ....++..+|+++..++...+.+++.|+. +++.+.-|+.+ +| --...||+++.
T Consensus 151 L~gK~I~vvGD-DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~--~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 151 LEGKEIFVVGD-DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN--NIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred cCCCeEEEEcC-chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc--chhheeehhcccChHHHHhhCCeeec
Confidence 35778999993 3334444432 45568999999999999999999999874 78888888754 23 11368998874
Q ss_pred cccccCcccHHHHHHHHHHcccCC---cEEEEEe
Q 022248 201 TLVLCSVKDVDMTLQEVRRVLKPG---GIYLFVE 231 (300)
Q Consensus 201 ~~~l~~~~~~~~~l~~~~~~Lkpg---G~l~~~~ 231 (300)
.-.+.++....++.+-...||.- |++.+.-
T Consensus 228 -DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 228 -DPPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred -CchhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 22333344456677777778765 6666644
No 350
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.34 E-value=2.8 Score=35.55 Aligned_cols=94 Identities=20% Similarity=0.292 Sum_probs=57.7
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+||=.|+|. |..+..+++..+.+ +++++.+++..+.+++. +.. +.+ +... ... .....+|+|+..
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~-~~~--~~~~-~~~-~~~~~~d~vl~~ 166 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPA-DPV--AADT-ADE-IGGRGADVVIEA 166 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCC-ccc--cccc-hhh-hcCCCCCEEEEc
Confidence 4677888888754 55666666666677 99999988877765543 210 111 1100 001 123468998853
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
..- ...+.+..+.|+++|.++....
T Consensus 167 ~~~------~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 167 SGS------PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred cCC------hHHHHHHHHHhcCCcEEEEEec
Confidence 211 2246788899999999988754
No 351
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=88.18 E-value=3.8 Score=36.58 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=54.7
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEe-cccCcCCCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ-AVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v~~~ 201 (300)
.++.+||=.|+| .|.++..+++..+.++++++.++.....+. ++.|.. .++. .+...+....+.+|+|+-.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga~----~vi~~~~~~~~~~~~~~~D~vid~ 254 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGAD----SFLVSTDPEKMKAAIGTMDYIIDT 254 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCCc----EEEcCCCHHHHHhhcCCCCEEEEC
Confidence 356788888874 455666667767788888887765432222 222321 1111 1111111011248888853
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.. . ...+....+.|++||.++.+..
T Consensus 255 ~g-----~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 255 VS-----A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred CC-----C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 32 1 2246778899999999998764
No 352
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=88.17 E-value=9.3 Score=35.94 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=66.7
Q ss_pred CCCeEEEECCCCChhHHHhHhC-----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CC-CCCcccE
Q 022248 125 KAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PV-SDASVDA 197 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~-~~~~~D~ 197 (300)
+...|.|..||+|.+....... ....++|.+....+...++.++.-.+...+......+|.... .+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 4568999999999988754431 224699999999999999887544433212222223332221 11 2345777
Q ss_pred EEEccc---------------------ccCcc----cHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 198 VVGTLV---------------------LCSVK----DVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 198 v~~~~~---------------------l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
|+++-- .|.++ .-..++..+..+|++||...++-+..
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 775321 11111 12356888999999999877765433
No 353
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.17 E-value=9.9 Score=31.26 Aligned_cols=103 Identities=19% Similarity=0.112 Sum_probs=61.6
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----C
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~ 191 (300)
++++||-.|++. ..+..+++ ..+.+|++++-++...+.+.+..... .++.++.+|+.+.. + .
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 457889888754 34444443 35779999999887666554444332 25778888876532 0 0
Q ss_pred CCcccEEEEcccccCc---cc--------------HHHHHHHHHHcccCCcEEEEEec
Q 022248 192 DASVDAVVGTLVLCSV---KD--------------VDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 192 ~~~~D~v~~~~~l~~~---~~--------------~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
-+.+|.++........ .+ ...+++.+...++++|.++++..
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 1356888765543211 11 11235566666778888888664
No 354
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.13 E-value=2.2 Score=38.82 Aligned_cols=90 Identities=19% Similarity=0.149 Sum_probs=57.6
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
..+.+|+=+|+|. |.....+++..+++++++|.++...+.|++. |. ... +.++. . ..+|+|+...
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~-----~~~--~~~e~-v--~~aDVVI~at 265 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GY-----EVM--TMEEA-V--KEGDIFVTTT 265 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CC-----EEc--cHHHH-H--cCCCEEEECC
Confidence 4688999999985 4444445556677999999998876666542 22 111 11111 1 3579998643
Q ss_pred cccCcccHHHHHH-HHHHcccCCcEEEEEecc
Q 022248 203 VLCSVKDVDMTLQ-EVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 203 ~l~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~ 233 (300)
. .. ..+. +..+.+|+||+++.+...
T Consensus 266 G-----~~-~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 266 G-----NK-DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred C-----CH-HHHHHHHHhcCCCCcEEEEeCCC
Confidence 2 22 2344 458899999999887743
No 355
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=88.13 E-value=4.4 Score=35.63 Aligned_cols=94 Identities=23% Similarity=0.319 Sum_probs=56.7
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----C--CCCCCcc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I--PVSDASV 195 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~--~~~~~~~ 195 (300)
.++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++. +.. .++...-.. + -...+.+
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~----~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT----DIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc----EEEcCCcchHHHHHHHHcCCCCC
Confidence 356788887764 35666667776664 788888887766655532 211 111111111 0 0123569
Q ss_pred cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
|+++....- ...+.+..+.|+++|+++...
T Consensus 238 d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 238 DCVIEAVGF------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cEEEEccCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 998853211 135788889999999998765
No 356
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.84 E-value=3.6 Score=35.95 Aligned_cols=96 Identities=14% Similarity=0.078 Sum_probs=60.3
Q ss_pred CCCCeEEEEC--CCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEec-ccCc-C-CCCCCcccE
Q 022248 124 GKAKKVLEIG--IGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQA-VGEA-I-PVSDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~-d~~~-~-~~~~~~~D~ 197 (300)
.++.+||=.| .|.|.++..+++..+.++++++.++...+.+++ .|.. .+ ..... +... . ....+.+|+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~--~vi~~~~~~~~~~~~~~~~~~gvdv 210 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD--VAFNYKTVKSLEETLKKASPDGYDC 210 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC--EEEeccccccHHHHHHHhCCCCeEE
Confidence 4677888887 357788888888778899999988887666643 2321 11 11110 1111 0 112246898
Q ss_pred EEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+-... . ..+....+.|+++|+++....
T Consensus 211 v~d~~G-----~--~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 211 YFDNVG-----G--EFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred EEECCC-----H--HHHHHHHHHhCcCcEEEEecc
Confidence 885321 1 235788899999999998753
No 357
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.71 E-value=4.1 Score=35.88 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=58.6
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-------C--CCCC
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-------I--PVSD 192 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-------~--~~~~ 192 (300)
.++.+||-.|+|. |..+..+++..+.+ +++++.++...+.+++. +.. .++..+-.. + ....
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~----~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT----HTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc----EEeccccccchhHHHHHHHHhCC
Confidence 4667887777654 56666777767777 89998888777666442 221 111111111 1 1233
Q ss_pred CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
..+|+|+-...- ...+.+..+.|+++|+++....
T Consensus 233 ~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 233 KGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 569999864321 1246888999999999987653
No 358
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=87.70 E-value=1.6 Score=30.87 Aligned_cols=74 Identities=9% Similarity=-0.010 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeecc
Q 022248 209 DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFL 284 (300)
Q Consensus 209 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 284 (300)
|..+++..+.... .|.+++.-....+--....++-++++.......-..+..+++.+.+.++||++...+...-
T Consensus 12 d~~~~l~~La~~t--~~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r~~ris~ 85 (97)
T PF07109_consen 12 DAAQMLAHLASRT--RGSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGRTERISS 85 (97)
T ss_pred HHHHHHHHHHHhc--cCcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeeecccccC
Confidence 4455666666544 4666665543333233444444444433332222345678999999999999877765543
No 359
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.42 E-value=7.1 Score=35.52 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=70.3
Q ss_pred CCCeEEEECC-CCCh------hHHHhHh-CCCceEEEEcC-CHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC------
Q 022248 125 KAKKVLEIGI-GTGP------NLKYYAA-DTDVQVLGVDP-NRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------ 189 (300)
Q Consensus 125 ~~~~vLDiGc-G~G~------~~~~l~~-~~~~~~~giD~-s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------ 189 (300)
++..||=+|= |+|. ++.++.+ ....-+++.|. -+.++++.+......++ .|+..+.+.-|
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v-----~~f~~~~~~~Pv~Iak~ 173 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV-----PFFGSGTEKDPVEIAKA 173 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC-----ceecCCCCCCHHHHHHH
Confidence 4567888875 6663 4444443 23345778884 78899999988877654 34443333333
Q ss_pred ----CCCCcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 190 ----VSDASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 190 ----~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
+..+.||+||+..+=.+-- +.-.-+.+++.+++|.-.|++++...
T Consensus 174 al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~ 224 (451)
T COG0541 174 ALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI 224 (451)
T ss_pred HHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 3457799999866544332 33466899999999999999998544
No 360
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=87.01 E-value=4 Score=35.92 Aligned_cols=91 Identities=9% Similarity=0.110 Sum_probs=57.8
Q ss_pred CeEEEECC--CCChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCcccEE
Q 022248 127 KKVLEIGI--GTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVDAV 198 (300)
Q Consensus 127 ~~vLDiGc--G~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v 198 (300)
.+||=.|+ |.|..+..+++..+. ++++++.+++..+.+++. .|.. . ++...-..+ ...++.+|+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~--~--vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD--A--AINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc--E--EEECCCCCHHHHHHHHCCCCceEE
Confidence 68888875 677788888887777 799999888776666553 2321 1 111111111 1112469999
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+.... . ..+.+..+.|+++|+++...
T Consensus 229 id~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 229 FDNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 85322 1 12477889999999999865
No 361
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=86.54 E-value=4.9 Score=38.11 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=63.4
Q ss_pred CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----C----CCCC
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----P----VSDA 193 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~----~~~~ 193 (300)
.+...|||+||..|.+..-..+. .+.-|+|||+-+-- . .+++..++.|+..- + ...-
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p--~~~c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------P--IPNCDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------c--CCccchhhhhhhHHHHHHHHHHHHHhC
Confidence 57789999999999998776663 56789999986621 0 13444444444221 1 1122
Q ss_pred cccEEEEccccc----CcccH-------HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh
Q 022248 194 SVDAVVGTLVLC----SVKDV-------DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV 248 (300)
Q Consensus 194 ~~D~v~~~~~l~----~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 248 (300)
..|+|+...+.. ++.|. ...+.-....|+.||.++.-.+...+...+...+.+++
T Consensus 110 ~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~qLf 175 (780)
T KOG1098|consen 110 KADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQLF 175 (780)
T ss_pred CCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHHHH
Confidence 347777543222 11121 23456666778899996654443333334444444444
No 362
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.34 E-value=6.6 Score=34.28 Aligned_cols=96 Identities=22% Similarity=0.300 Sum_probs=57.9
Q ss_pred CCCCeEEEECC-CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc--cCcC----CCCCCccc
Q 022248 124 GKAKKVLEIGI-GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV--GEAI----PVSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGc-G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d--~~~~----~~~~~~~D 196 (300)
.++++|-=+|- |-|.++..+++..+.+|++||-+..--+.+-+. .|.+ .|+... -... ..-+.-.|
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LGAd----~fv~~~~d~d~~~~~~~~~dg~~~ 252 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LGAD----VFVDSTEDPDIMKAIMKTTDGGID 252 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cCcc----eeEEecCCHHHHHHHHHhhcCcce
Confidence 36666555553 589999999998999999999987544444333 3321 122211 1111 11233444
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
.|... +-+ .+..+...||++|.++++....
T Consensus 253 ~v~~~-a~~-------~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 253 TVSNL-AEH-------ALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeeec-ccc-------chHHHHHHhhcCCEEEEEeCcC
Confidence 44432 222 3577888999999999988543
No 363
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.26 E-value=5.8 Score=35.32 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=55.2
Q ss_pred CCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
++.+||=.|+| .|.++..+++..+.++++++.++.....+.+. .|.. .+ +...+...+.-....+|+|+-...
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~--~~-i~~~~~~~~~~~~~~~D~vid~~g 253 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD--DY-LVSSDAAEMQEAADSLDYIIDTVP 253 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc--EE-ecCCChHHHHHhcCCCcEEEECCC
Confidence 56778777653 45566666776777888888877655444332 2321 11 111111111101124888885321
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
....+..+.+.|+++|+++.....
T Consensus 254 ------~~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 254 ------VFHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred ------chHHHHHHHHHhccCCEEEEECCC
Confidence 123567788999999999987643
No 364
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=85.87 E-value=6.6 Score=34.18 Aligned_cols=93 Identities=11% Similarity=0.084 Sum_probs=59.6
Q ss_pred CCCCeEEEEC--CCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCccc
Q 022248 124 GKAKKVLEIG--IGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D 196 (300)
.++.+||=.| .|.|..+..+++..+.++++++.++...+.+++ .|.. . ++...-+++ ....+.+|
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~--~--vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD--A--VFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC--E--EEeCCCccHHHHHHHHCCCCcE
Confidence 4667888777 466777788888778899999988877666654 2321 1 121111111 11224689
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+|+-... . ..+....+.|+++|+++...
T Consensus 214 ~vld~~g-----~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 214 CYFDNVG-----G--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EEEECCC-----H--HHHHHHHHhhccCCEEEEEc
Confidence 8885321 1 34688899999999998765
No 365
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=84.81 E-value=8 Score=33.97 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=58.1
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc---cCcC-C-CCCCccc
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV---GEAI-P-VSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d---~~~~-~-~~~~~~D 196 (300)
.++.+||-.|+|. |..+..+++..+.. +++++.++...+.+++ .+.. .++... ...+ . .....+|
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~----~~~~~~~~~~~~~~~~~~~~~~d 229 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD----DTINPKEEDVEKVRELTEGRGAD 229 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC----EEecCccccHHHHHHHhCCCCCC
Confidence 4667888888754 56666677767776 9999988877665533 2221 111111 1111 1 1224599
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+|+... .....+..+.+.|+++|.++....
T Consensus 230 ~vld~~------g~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 230 LVIEAA------GSPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred EEEECC------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 998542 112356888999999999988763
No 366
>PLN02740 Alcohol dehydrogenase-like
Probab=84.41 E-value=5.9 Score=35.66 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=58.4
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc-----cCc-C-CCCCCc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-----GEA-I-PVSDAS 194 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d-----~~~-~-~~~~~~ 194 (300)
.++.+||=+|+| .|.++..+++..+. +++++|.++..++.+++. +.. .++... ..+ + ....+.
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~----~~i~~~~~~~~~~~~v~~~~~~g 268 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GIT----DFINPKDSDKPVHERIREMTGGG 268 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCc----EEEecccccchHHHHHHHHhCCC
Confidence 467889988874 34455566666676 699999999888777542 321 122111 100 1 011236
Q ss_pred ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEecc
Q 022248 195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHV 233 (300)
Q Consensus 195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 233 (300)
+|+|+-...- ...+......+++| |+++++...
T Consensus 269 ~dvvid~~G~------~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 269 VDYSFECAGN------VEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred CCEEEECCCC------hHHHHHHHHhhhcCCCEEEEEccC
Confidence 9999854321 23467777888886 998887654
No 367
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=84.25 E-value=9.2 Score=33.87 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=57.4
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----C--CCCCccc
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----P--VSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~~D 196 (300)
.++.+||=.|+|. |.++..+++..+.+++++|.++..++.+++. +.. .-+.....+.+++ . .....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~-~~i~~~~~~~~~~~~~~~~~t~~~g~d 239 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF----GAD-LTLNPKDKSAREVKKLIKAFAKARGLR 239 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc-eEecCccccHHHHHHHHHhhcccCCCC
Confidence 4678999999854 5666666766677899999999887777542 221 0011111110010 0 0112344
Q ss_pred ----EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 197 ----AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 197 ----~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
+|+-.. . ....+....+.|++||+++++...
T Consensus 240 ~~~d~v~d~~-----g-~~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 240 STGWKIFECS-----G-SKPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CCcCEEEECC-----C-ChHHHHHHHHHHhcCCeEEEECcC
Confidence 454211 1 123456778899999999998753
No 368
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=84.15 E-value=9.7 Score=33.60 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=56.4
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc---cCcC--CCCCCccc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV---GEAI--PVSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d---~~~~--~~~~~~~D 196 (300)
.++.+||=.|+| .|.++..+++..+.+ ++++|.++...+.+++ .+.. .++..+ ...+ ......+|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~~~~~~~~~~d 230 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM----QTFNSREMSAPQIQSVLRELRFD 230 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----eEecCcccCHHHHHHHhcCCCCC
Confidence 457788888874 344555566666765 7899998887776643 2221 111111 0111 01224577
Q ss_pred -EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 197 -AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 197 -~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
+|+-.- .. ...+.+..+.|++||.+++....
T Consensus 231 ~~v~d~~-----G~-~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 231 QLILETA-----GV-PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred eEEEECC-----CC-HHHHHHHHHHhhcCCEEEEEccC
Confidence 555321 11 23578888999999999998743
No 369
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=84.14 E-value=1.2 Score=35.28 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=35.2
Q ss_pred CCCCcccEEEEcccccCcc------------cHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248 190 VSDASVDAVVGTLVLCSVK------------DVDMTLQEVRRVLKPGGIYLFVEHVAAK 236 (300)
Q Consensus 190 ~~~~~~D~v~~~~~l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 236 (300)
...+..|+|+++++|+.+. +.+.++..+..+|+|+..++...-.+.+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~ 104 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVA 104 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCC
Confidence 3457789999999988662 3456778888888899888887755533
No 370
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.06 E-value=11 Score=36.33 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=57.2
Q ss_pred CeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEEE
Q 022248 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVV 199 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~ 199 (300)
.+|+= ||.|.++..+++ ..+..++.+|.+++.++.+++. ....+.+|+.+.. ..-+..|+++
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~---------g~~v~~GDat~~~~L~~agi~~A~~vv 469 (601)
T PRK03659 401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY---------GYKVYYGDATQLELLRAAGAEKAEAIV 469 (601)
T ss_pred CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC---------CCeEEEeeCCCHHHHHhcCCccCCEEE
Confidence 34544 555666766655 4677999999999998887652 3467888886642 2234677777
Q ss_pred EcccccCcccHH--HHHHHHHHcccCCcEEEEEe
Q 022248 200 GTLVLCSVKDVD--MTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 200 ~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~ 231 (300)
+.. +|.+ ..+-...|.+.|+..++.-.
T Consensus 470 ~~~-----~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 470 ITC-----NEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred EEe-----CCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 643 2322 23444556678888888754
No 371
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=83.98 E-value=2 Score=37.87 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=63.0
Q ss_pred CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-C-C-CCCCcccEE
Q 022248 124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I-P-VSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~~D~v 198 (300)
.++.+||=.|. |.|.++.+|++..+..++++--+++-.+.+++ .+.+ .-+.+...|+.+ + . .....+|+|
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd-~vi~y~~~~~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGAD-HVINYREEDFVEQVRELTGGKGVDVV 215 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCC-EEEcCCcccHHHHHHHHcCCCCceEE
Confidence 45788998874 66788899998777677777777765554443 3321 122223333221 1 1 223469999
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
+..-.- ..+.+..+.|+++|.++......
T Consensus 216 ~D~vG~-------~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 216 LDTVGG-------DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred EECCCH-------HHHHHHHHHhccCCEEEEEecCC
Confidence 964332 34577889999999999987654
No 372
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=83.13 E-value=12 Score=29.88 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=47.8
Q ss_pred CeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEecccCcC---------CCCCCcc
Q 022248 127 KKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAI---------PVSDASV 195 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~---------~~~~~~~ 195 (300)
..|+.+|||--.....+.... +..++-+|. +.+++.-++.++..+.. ..+.+++.+|+.+. .+..+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 489999999988877776543 778888886 55566555555554210 12345688888652 1334555
Q ss_pred cEEEEcccccCcc
Q 022248 196 DAVVGTLVLCSVK 208 (300)
Q Consensus 196 D~v~~~~~l~~~~ 208 (300)
-++++-.++.+++
T Consensus 159 tl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 159 TLFIAEGVLMYLS 171 (183)
T ss_dssp EEEEEESSGGGS-
T ss_pred eEEEEcchhhcCC
Confidence 6777777788774
No 373
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=83.12 E-value=7.2 Score=34.27 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=61.6
Q ss_pred CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEec-ccCc-C-CCCCCcccE
Q 022248 124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQA-VGEA-I-PVSDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~-d~~~-~-~~~~~~~D~ 197 (300)
.++.+||=.|+ |.|.++..+++..+.++++++.++...+.+++.+ |.. .+ ..... +..+ + ....+.+|+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~--~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFD--DAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCc--eeEEcCCcccHHHHHHHhCCCCcEE
Confidence 46788888885 5677888888878889999998887777666532 221 11 11111 1111 0 111246898
Q ss_pred EEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+-... . ..+.+..+.|+++|.++....
T Consensus 225 v~d~~g-----~--~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 225 YFDNVG-----G--KMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred EEECCC-----H--HHHHHHHHHhccCcEEEEecc
Confidence 885321 1 356888999999999998653
No 374
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.02 E-value=3.8 Score=36.95 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=34.9
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHH
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV 169 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~ 169 (300)
.++.+||-|.+|....+..+.+ ...+|++||+|+.++...+-+..
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH
Confidence 5788999998776666656554 45699999999998888776654
No 375
>PRK07576 short chain dehydrogenase; Provisional
Probab=82.28 E-value=19 Score=30.38 Aligned_cols=74 Identities=16% Similarity=0.019 Sum_probs=45.8
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----C
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~ 191 (300)
+++++|=.|. +|..+..+++ ..+..|+++|.++..++...+.+...+ .++.++..|+.+.. + .
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG---PEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 5678888875 4444444443 357789999988877666555444332 25667777875421 0 1
Q ss_pred CCcccEEEEcc
Q 022248 192 DASVDAVVGTL 202 (300)
Q Consensus 192 ~~~~D~v~~~~ 202 (300)
.+.+|+++.+.
T Consensus 84 ~~~iD~vi~~a 94 (264)
T PRK07576 84 FGPIDVLVSGA 94 (264)
T ss_pred cCCCCEEEECC
Confidence 24689998654
No 376
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.14 E-value=12 Score=33.08 Aligned_cols=99 Identities=22% Similarity=0.202 Sum_probs=57.9
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC-cC-C-CCCCcccEE
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE-AI-P-VSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~-~~-~-~~~~~~D~v 198 (300)
.++.+||=.|+| .|..+..+++..+. .++++|.++...+.+++ .+.. .-+.....+.. .+ . .....+|+|
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~~~~~~~~i~~~~~~~~~d~v 239 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT-DIVDYKNGDVVEQILKLTGGKGVDAV 239 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc-eEecCCCCCHHHHHHHHhCCCCCcEE
Confidence 456788888765 44555666665666 59999998877666654 2321 00111111110 00 1 123468998
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
+.... . ...+.++.+.|+++|+++.....
T Consensus 240 ld~~g-----~-~~~~~~~~~~l~~~G~~v~~g~~ 268 (351)
T cd08285 240 IIAGG-----G-QDTFEQALKVLKPGGTISNVNYY 268 (351)
T ss_pred EECCC-----C-HHHHHHHHHHhhcCCEEEEeccc
Confidence 85321 1 23568889999999999987643
No 377
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=81.66 E-value=17 Score=32.23 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=55.4
Q ss_pred CCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEecccC----cC-C-CCCCcc
Q 022248 125 KAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVGE----AI-P-VSDASV 195 (300)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~~----~~-~-~~~~~~ 195 (300)
++.+||=.|+| .|..+..+++..+. ++++++.++...+.+++ .+.. .+ .....+.. .+ . .....+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD--ATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC--eEEcCcccccHHHHHHHHHHhCCCCC
Confidence 56777777753 33444555666777 89999988876665542 2321 11 11110100 00 0 123468
Q ss_pred cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+|+....- ...+.+..+.|+++|+++....
T Consensus 251 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 251 DVVIEASGH------PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred cEEEECCCC------hHHHHHHHHHhccCCEEEEEcC
Confidence 999853211 2246788899999999998764
No 378
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=81.61 E-value=31 Score=30.40 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=57.6
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC-cC-C-CCCCcccEE
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE-AI-P-VSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~-~~-~-~~~~~~D~v 198 (300)
.++.+||=.|+| .|.++..+++..+. .+++++.++...+.+++. +.. .-+.....+.. .+ . ...+.+|+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~-~~i~~~~~~~~~~l~~~~~~~~~d~v 245 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GAT-IVLDPTEVDVVAEVRKLTGGGGVDVS 245 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC-EEECCCccCHHHHHHHHhCCCCCCEE
Confidence 356777777753 34455555666677 799999888877776442 321 00111111110 01 0 122459999
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
+-.... ...+..+.+.|+++|.++.....
T Consensus 246 id~~g~------~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 246 FDCAGV------QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred EECCCC------HHHHHHHHHhccCCCEEEEEccC
Confidence 854321 22468888999999999987653
No 379
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=81.02 E-value=25 Score=27.59 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=55.1
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc---CC-CCCCcccEEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA---IP-VSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~-~~~~~~D~v~ 199 (300)
....+|+-|||=+-.....-......+++..|++...... + ++ .|+--|... +| .-.++||+|+
T Consensus 24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~---~~-~F~fyD~~~p~~~~~~l~~~~d~vv 91 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------G---GD-EFVFYDYNEPEELPEELKGKFDVVV 91 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------C---Cc-ceEECCCCChhhhhhhcCCCceEEE
Confidence 4668999999987544333212467789999998754321 1 12 344444432 22 1147999999
Q ss_pred EcccccCcccH-HHHHHHHHHcccCCcEEEEEe
Q 022248 200 GTLVLCSVKDV-DMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 200 ~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+.=-+- ..+. ......+.-++|+++.+++..
T Consensus 92 ~DPPFl-~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 92 IDPPFL-SEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred ECCCCC-CHHHHHHHHHHHHHHhCccceEEEec
Confidence 843221 1222 234455555558888888876
No 380
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=80.98 E-value=16 Score=32.63 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=58.7
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEe--cccCc-C-CCCCCcccE
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ--AVGEA-I-PVSDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~--~d~~~-~-~~~~~~~D~ 197 (300)
.++.+||=.|+| .|.++..+++..+. +++++|.++..++.+++. +.. .-+.... .+... + ....+.+|+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~-~~i~~~~~~~~~~~~v~~~~~~g~d~ 258 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GAT-DCVNPNDYDKPIQEVIVEITDGGVDY 258 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCC-eEEcccccchhHHHHHHHHhCCCCCE
Confidence 467888888875 35566667776676 799999999888777543 321 0011110 00000 1 011236898
Q ss_pred EEEcccccCcccHHHHHHHHHHcccCC-cEEEEEecc
Q 022248 198 VVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHV 233 (300)
Q Consensus 198 v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 233 (300)
|+-.-. . ...+....+.++++ |+++++...
T Consensus 259 vid~~G-----~-~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 259 SFECIG-----N-VNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred EEECCC-----C-HHHHHHHHHHhhcCCCeEEEEecc
Confidence 885321 1 23467778889886 999887753
No 381
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=80.85 E-value=13 Score=32.29 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=54.7
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
.++.+||=.|+| .|..+..+++..+.+++.++.++...+.+++ .+.. .++.. ... .++.+|+++...
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~----~~~~~--~~~--~~~~vD~vi~~~ 233 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD----WAGDS--DDL--PPEPLDAAIIFA 233 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc----EEecc--Ccc--CCCcccEEEEcC
Confidence 356677777664 2334444555677899999988876666633 2221 11111 111 234688887532
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
. . ...+.++.+.|+++|.++....
T Consensus 234 ~-----~-~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 234 P-----V-GALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred C-----c-HHHHHHHHHHhhcCCEEEEEcC
Confidence 1 1 1357889999999999998653
No 382
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=80.71 E-value=18 Score=27.76 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=48.8
Q ss_pred eEEEECCCCC---hhHHHhHhCCCceEEEEcCC--HHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CCC
Q 022248 128 KVLEIGIGTG---PNLKYYAADTDVQVLGVDPN--RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VSD 192 (300)
Q Consensus 128 ~vLDiGcG~G---~~~~~l~~~~~~~~~giD~s--~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~~ 192 (300)
++|=.|++.| .++..+++..+..++.+.-+ ....+.....++..+ .++.++..|+.+.. ...
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG---AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT---SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 5666777655 23344444546678888887 566666666666555 47899998875531 124
Q ss_pred CcccEEEEcccccC
Q 022248 193 ASVDAVVGTLVLCS 206 (300)
Q Consensus 193 ~~~D~v~~~~~l~~ 206 (300)
+.+|+++.+.....
T Consensus 79 ~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 79 GPLDILINNAGIFS 92 (167)
T ss_dssp SSESEEEEECSCTT
T ss_pred cccccccccccccc
Confidence 67999997655443
No 383
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=80.50 E-value=9.9 Score=34.19 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHH-HHHHHHHHHHcCCCCCCEEEEe-cccCcCCCCCCcccEEEEc
Q 022248 125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKM-EKYAQTAAVAAGLPLTNFKFLQ-AVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~-~~~a~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v~~~ 201 (300)
++.+||=.|+| .|.++..+++..+.+++++|.++.. .+.++ ..|.. . ++. .+.+.+.-..+.+|+|+-.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~--~--~i~~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD--S--FLVTTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc--E--EEcCcCHHHHHHhhCCCcEEEEC
Confidence 57788888874 4456666677678889999887543 33332 23321 1 111 1101110001248888853
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.. ....+....+.|+++|.++.+..
T Consensus 250 ~G------~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 250 VS------AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred CC------cHHHHHHHHHhhcCCCEEEEEcc
Confidence 21 12246778889999999998764
No 384
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.42 E-value=13 Score=32.63 Aligned_cols=97 Identities=21% Similarity=0.204 Sum_probs=54.9
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc---CcCCCCCCcccEE
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG---EAIPVSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v 198 (300)
.++.+||-.|+|. |..+..+++..+. .+++++-++.-...+++. +.. .-+.....+. .++ ...+.+|+|
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~-~~~~~~~~~~~~~~~~-~~~~~vd~v 235 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GAD-VVINPREEDVVEVKSV-TDGTGVDVV 235 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----Ccc-eeeCcccccHHHHHHH-cCCCCCCEE
Confidence 3566777777643 5566666666666 688887777665554432 211 0000001111 111 123568999
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+..-. ....+.++.+.|+++|.++....
T Consensus 236 ld~~g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 236 LEMSG------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred EECCC------CHHHHHHHHHHhccCCEEEEEcc
Confidence 85321 12246788899999999988753
No 385
>PRK12939 short chain dehydrogenase; Provisional
Probab=80.19 E-value=16 Score=30.15 Aligned_cols=76 Identities=17% Similarity=0.061 Sum_probs=48.3
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CC-----
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----- 191 (300)
+++++|=.|+ +|..+..+++ ..+.++++++.++..++...+.++..+ .++.++.+|+.+.. +.
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG---GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567886665 4555555554 356789999988877666655554433 36788888886532 11
Q ss_pred CCcccEEEEcccc
Q 022248 192 DASVDAVVGTLVL 204 (300)
Q Consensus 192 ~~~~D~v~~~~~l 204 (300)
-+.+|+|+.....
T Consensus 82 ~~~id~vi~~ag~ 94 (250)
T PRK12939 82 LGGLDGLVNNAGI 94 (250)
T ss_pred cCCCCEEEECCCC
Confidence 1468998876543
No 386
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.54 E-value=21 Score=34.02 Aligned_cols=90 Identities=8% Similarity=0.038 Sum_probs=54.7
Q ss_pred CeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEEE
Q 022248 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVV 199 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~ 199 (300)
.+|+=+|| |..+..+++ ..+.+++.+|.+++.++.+++. ....+.+|..+.. ..-+..|.++
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~---------g~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER---------GIRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC---------CCeEEEcCCCCHHHHHhcCccccCEEE
Confidence 45555555 556666665 3567899999999988887642 4667888886632 2235778666
Q ss_pred EcccccCcccH-HHHHHHHHHcccCCcEEEEEe
Q 022248 200 GTLVLCSVKDV-DMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 200 ~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+... .|. ...+-...+...|+..++...
T Consensus 487 v~~~----~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 487 LTIP----NGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred EEcC----ChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 4321 111 122333445567777777644
No 387
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=79.54 E-value=9.6 Score=34.71 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=54.9
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
..+++|+=+|+|. |......++..+.+|+++|.++.....+.. .|. .+ .+.++. . ...|+|+...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G~-----~v--~~leea-l--~~aDVVItaT 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DGF-----RV--MTMEEA-A--KIGDIFITAT 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cCC-----Ee--CCHHHH-H--hcCCEEEECC
Confidence 4688999999985 444444555678899999988864333322 221 11 122221 1 3468887643
Q ss_pred cccCcccHHHHH-HHHHHcccCCcEEEEEecc
Q 022248 203 VLCSVKDVDMTL-QEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 203 ~l~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~ 233 (300)
. . ..++ .+....+|+|++++.....
T Consensus 259 G-----~-~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 259 G-----N-KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred C-----C-HHHHHHHHHhcCCCCcEEEEECCC
Confidence 2 2 2333 4578889999999887654
No 388
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=79.45 E-value=12 Score=26.33 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=44.1
Q ss_pred CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccC
Q 022248 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS 206 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 206 (300)
.+|| +-||+|..+..++ +..++.+++.++ .+++...+..+++-....+|+|+..
T Consensus 4 ~~IL-l~C~~G~sSS~l~-----------------~k~~~~~~~~gi---~~~v~a~~~~~~~~~~~~~Dvill~----- 57 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLV-----------------NKMNKAAEEYGV---PVKIAAGSYGAAGEKLDDADVVLLA----- 57 (95)
T ss_pred cEEE-EECCCchhHHHHH-----------------HHHHHHHHHCCC---cEEEEEecHHHHHhhcCCCCEEEEC-----
Confidence 4666 6699995554333 344555666665 4666666665553333568999975
Q ss_pred cccHHHHHHHHHHcccCCcE
Q 022248 207 VKDVDMTLQEVRRVLKPGGI 226 (300)
Q Consensus 207 ~~~~~~~l~~~~~~LkpgG~ 226 (300)
+.....+.++...+.+-|.
T Consensus 58 -pqi~~~~~~i~~~~~~~~i 76 (95)
T TIGR00853 58 -PQVAYMLPDLKKETDKKGI 76 (95)
T ss_pred -chHHHHHHHHHHHhhhcCC
Confidence 3444456777777665443
No 389
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=79.03 E-value=36 Score=28.29 Aligned_cols=77 Identities=18% Similarity=-0.006 Sum_probs=49.5
Q ss_pred CCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------C
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V 190 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 190 (300)
.++++||=.|++. .++..+++ ..+.+++.++-++..++...+.++..+ .++.++.+|+.+.. -
T Consensus 9 ~~~k~ilItGas~-~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 9 LAGQVALVTGSAR-GLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG---GAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCEEEEECCCc-hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHH
Confidence 3677888888644 44555543 357799999998877666665555443 35778888875421 0
Q ss_pred CCCcccEEEEcccc
Q 022248 191 SDASVDAVVGTLVL 204 (300)
Q Consensus 191 ~~~~~D~v~~~~~l 204 (300)
.-+.+|.|+.+...
T Consensus 85 ~~~~id~vi~~ag~ 98 (256)
T PRK06124 85 EHGRLDILVNNVGA 98 (256)
T ss_pred hcCCCCEEEECCCC
Confidence 12467888876543
No 390
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=78.84 E-value=25 Score=31.90 Aligned_cols=102 Identities=19% Similarity=0.129 Sum_probs=58.0
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec---ccCc-CC--CCCCcc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA---VGEA-IP--VSDASV 195 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---d~~~-~~--~~~~~~ 195 (300)
.++.+||=.|+| .|.++..+++..+.. ++.+|.++.-++.+++. |. . .+... +... +. .....+
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga---~-~v~~~~~~~~~~~v~~~~~~~g~ 255 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GC---E-TVDLSKDATLPEQIEQILGEPEV 255 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CC---e-EEecCCcccHHHHHHHHcCCCCC
Confidence 356677667774 344555566655655 56678888777777653 32 1 11111 1111 10 122468
Q ss_pred cEEEEcccccC--------cccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 196 DAVVGTLVLCS--------VKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 196 D~v~~~~~l~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
|+|+-.-.... ..+....+++..+.+++||.++++...
T Consensus 256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 256 DCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred cEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 99985433210 011224688899999999999998753
No 391
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=78.72 E-value=23 Score=29.51 Aligned_cols=76 Identities=12% Similarity=0.025 Sum_probs=49.7
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----C
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~ 191 (300)
.+++||=.|+ +|.++..+++ ..+.+|++++.++..++...+.++..+ .++.++..|+.+.. + .
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG---LSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 5678888875 4555555554 357799999998877766666665443 25777888876531 1 1
Q ss_pred CCcccEEEEcccc
Q 022248 192 DASVDAVVGTLVL 204 (300)
Q Consensus 192 ~~~~D~v~~~~~l 204 (300)
-+..|.|+.+...
T Consensus 85 ~~~~d~li~~ag~ 97 (255)
T PRK07523 85 IGPIDILVNNAGM 97 (255)
T ss_pred cCCCCEEEECCCC
Confidence 2468998876544
No 392
>PLN02827 Alcohol dehydrogenase-like
Probab=78.71 E-value=12 Score=33.68 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=56.4
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-----ccCc-C-CCCCCc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-----VGEA-I-PVSDAS 194 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-----d~~~-~-~~~~~~ 194 (300)
.++.+||=.|+| .|.++..+++..+. .++++|.++...+.+++ .+.. .++.. +... + ....+.
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~----~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT----DFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----EEEcccccchHHHHHHHHHhCCC
Confidence 467889988864 34444555655565 58899988887776644 2321 11211 1100 0 011236
Q ss_pred ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEecc
Q 022248 195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHV 233 (300)
Q Consensus 195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 233 (300)
+|+|+-.-. ....+....+.|++| |+++++...
T Consensus 264 ~d~vid~~G------~~~~~~~~l~~l~~g~G~iv~~G~~ 297 (378)
T PLN02827 264 ADYSFECVG------DTGIATTALQSCSDGWGLTVTLGVP 297 (378)
T ss_pred CCEEEECCC------ChHHHHHHHHhhccCCCEEEEECCc
Confidence 898885332 122467788889998 999887643
No 393
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=78.59 E-value=13 Score=31.50 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=60.3
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.++....|+|.-.|.++-.|.+ .+..|++||.-+ |.+.. . . .+.|+....|-.+..-.....|-.+|..
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVk-r~m~V~aVDng~-ma~sL---~-d----tg~v~h~r~DGfk~~P~r~~idWmVCDm- 278 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVK-RNMRVYAVDNGP-MAQSL---M-D----TGQVTHLREDGFKFRPTRSNIDWMVCDM- 278 (358)
T ss_pred cCCceeeecccCCCccchhhhh-cceEEEEeccch-hhhhh---h-c----ccceeeeeccCcccccCCCCCceEEeeh-
Confidence 3788999999999999999986 477999999644 32222 1 1 1467778778766532457789888854
Q ss_pred ccCcccHHHHHHHHHHcccCC
Q 022248 204 LCSVKDVDMTLQEVRRVLKPG 224 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~Lkpg 224 (300)
++.+..+-..|..+|..|
T Consensus 279 ---VEkP~rv~~li~~Wl~nG 296 (358)
T COG2933 279 ---VEKPARVAALIAKWLVNG 296 (358)
T ss_pred ---hcCcHHHHHHHHHHHHcc
Confidence 455555666666666544
No 394
>PRK07326 short chain dehydrogenase; Provisional
Probab=78.54 E-value=31 Score=28.22 Aligned_cols=74 Identities=18% Similarity=-0.025 Sum_probs=46.5
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----C
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~ 191 (300)
.+.+||=.|. +|.++..+++ ..+.+|++++.++...+...+.+... .++.++.+|+.+.. + .
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK----GNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc----CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3567888884 5556666554 34678999998876666555444322 25778888875431 1 1
Q ss_pred CCcccEEEEccc
Q 022248 192 DASVDAVVGTLV 203 (300)
Q Consensus 192 ~~~~D~v~~~~~ 203 (300)
-+.+|+|+....
T Consensus 80 ~~~~d~vi~~ag 91 (237)
T PRK07326 80 FGGLDVLIANAG 91 (237)
T ss_pred cCCCCEEEECCC
Confidence 136899887544
No 395
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=78.33 E-value=18 Score=32.28 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=57.3
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----C-CCCCCccc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I-PVSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~-~~~~~~~D 196 (300)
.++.+||=.|+| .|..+..+++..+. .++++|.++...+.+++. +.. .++..+-.. + ......+|
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~----~~i~~~~~~~~~~v~~~~~~~~d 256 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT----HVINPKEEDLVAAIREITGGGVD 256 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc----EEecCCCcCHHHHHHHHhCCCCc
Confidence 356788888764 25566666666666 699999998776665432 211 112111111 1 01134689
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+|+....- ...+..+.+.|+++|.++....
T Consensus 257 ~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 257 YALDTTGV------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred EEEECCCC------cHHHHHHHHHhccCCEEEEeCc
Confidence 99853211 1246888999999999998764
No 396
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=78.29 E-value=19 Score=31.56 Aligned_cols=97 Identities=20% Similarity=0.196 Sum_probs=55.5
Q ss_pred CCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcC--CCCCCcccEEE
Q 022248 125 KAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAI--PVSDASVDAVV 199 (300)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~--~~~~~~~D~v~ 199 (300)
++.+||-.|+| .|..+..+++..+.+ +++++-++...+.+++. +.. .-+.....+. +.+ ....+.+|+|+
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~-~~v~~~~~~~~~~l~~~~~~~~~d~vl 235 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GAT-YVVNPFKEDVVKEVADLTDGEGVDVFL 235 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc-EEEcccccCHHHHHHHhcCCCCCCEEE
Confidence 56677766664 455566666666776 88888877666655432 221 0011111111 001 01235689998
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.... ....+.++.+.|+++|.++....
T Consensus 236 d~~g------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 236 EMSG------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred ECCC------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 6421 12346888999999999988764
No 397
>PRK08265 short chain dehydrogenase; Provisional
Probab=78.23 E-value=25 Score=29.54 Aligned_cols=72 Identities=18% Similarity=0.054 Sum_probs=44.0
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----C
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~ 191 (300)
.++++|=.|++.| ++..+++ ..+.+|+.+|.+...++...+.. + .++.++.+|+.+.. + .
T Consensus 5 ~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 5 AGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDADNGAAVAASL---G---ERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C---CeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 4567887776444 4555443 35779999998876554443322 2 35778888886532 0 1
Q ss_pred CCcccEEEEccc
Q 022248 192 DASVDAVVGTLV 203 (300)
Q Consensus 192 ~~~~D~v~~~~~ 203 (300)
-+..|+++.+..
T Consensus 78 ~g~id~lv~~ag 89 (261)
T PRK08265 78 FGRVDILVNLAC 89 (261)
T ss_pred hCCCCEEEECCC
Confidence 146898887644
No 398
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.19 E-value=24 Score=28.44 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=60.4
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
..+.+||=+|.- +|.+...++.. ..+++.+|+.+.+-... +.++.|... +.+..+.+|+|+-..
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~l----------p~~v~Fr~~----~~~~~G~~DlivDlT 107 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFL----------PNNVKFRNL----LKFIRGEVDLIVDLT 107 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcC----------CCCccHhhh----cCCCCCceeEEEecc
Confidence 577899999984 77777777654 66999999999764332 245555443 345568899999877
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
.+-.+. -+..+-+.|+ .|++-++..
T Consensus 108 GlGG~~------Pe~L~~fnp~-vfiVEdP~g 132 (254)
T COG4017 108 GLGGIE------PEFLAKFNPK-VFIVEDPKG 132 (254)
T ss_pred ccCCCC------HHHHhccCCc-eEEEECCCC
Confidence 777653 3445556665 566665544
No 399
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.17 E-value=35 Score=28.64 Aligned_cols=75 Identities=15% Similarity=0.010 Sum_probs=48.3
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC----------C
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----------S 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----------~ 191 (300)
+++++|=.|+ +|.++..+++ ..+.+|++++.++..++...+.++..+ .++.++..|+.+... .
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG---RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5678888885 4445555543 356799999998877766655554433 367788888755320 0
Q ss_pred CCcccEEEEccc
Q 022248 192 DASVDAVVGTLV 203 (300)
Q Consensus 192 ~~~~D~v~~~~~ 203 (300)
-+.+|+|+....
T Consensus 85 ~~~id~vi~~Ag 96 (263)
T PRK07814 85 FGRLDIVVNNVG 96 (263)
T ss_pred cCCCCEEEECCC
Confidence 146899987543
No 400
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=77.88 E-value=5.8 Score=35.50 Aligned_cols=108 Identities=15% Similarity=0.035 Sum_probs=64.9
Q ss_pred CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--------------
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-------------- 189 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-------------- 189 (300)
...+.||++|+.+.....+++ ....+--|+++..+.+..++..-...+......++..+|+...+
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 467899999999988877776 22345557777777777776543321111123444444443221
Q ss_pred ---------------CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248 190 ---------------VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA 235 (300)
Q Consensus 190 ---------------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 235 (300)
++...+|. ..+..|+.+...++......++|+|.+++.+....
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~ 317 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG 317 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence 11222333 23344455556677888888999999998775543
No 401
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=77.50 E-value=8.1 Score=30.13 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=46.5
Q ss_pred eEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
+|-=||+ |.++..+++ ..+..+++.|.+++..+.+.+. .+.. ..+..++- ...|+|+...
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---------g~~~-~~s~~e~~---~~~dvvi~~v-- 65 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA---------GAEV-ADSPAEAA---EQADVVILCV-- 65 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT---------TEEE-ESSHHHHH---HHBSEEEE-S--
T ss_pred EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh---------hhhh-hhhhhhHh---hcccceEeec--
Confidence 3444555 456666655 3678999999998776665543 2222 22322221 3458888632
Q ss_pred cCcccHHHHHHH--HHHcccCCcEEEEEe
Q 022248 205 CSVKDVDMTLQE--VRRVLKPGGIYLFVE 231 (300)
Q Consensus 205 ~~~~~~~~~l~~--~~~~LkpgG~l~~~~ 231 (300)
..-...+.++.. +...|++|..++-..
T Consensus 66 ~~~~~v~~v~~~~~i~~~l~~g~iiid~s 94 (163)
T PF03446_consen 66 PDDDAVEAVLFGENILAGLRPGKIIIDMS 94 (163)
T ss_dssp SSHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred ccchhhhhhhhhhHHhhccccceEEEecC
Confidence 111223455666 777777776665433
No 402
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=77.07 E-value=6.8 Score=34.09 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=46.8
Q ss_pred EEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc--C-----CCCCCcccEEE
Q 022248 130 LEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA--I-----PVSDASVDAVV 199 (300)
Q Consensus 130 LDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~-----~~~~~~~D~v~ 199 (300)
+|||.|.- +++.+. ..+...+++|+.+.-+..|+.++...++. +.+.++.....+ + ..++..||.+.
T Consensus 107 iDIgtgas--ci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls-s~ikvV~~~~~ktll~d~~~~~~e~~ydFcM 183 (419)
T KOG2912|consen 107 IDIGTGAS--CIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS-SLIKVVKVEPQKTLLMDALKEESEIIYDFCM 183 (419)
T ss_pred eeccCchh--hhHHhhhchhccceeeeeeccccccchhhccccccccc-cceeeEEecchhhcchhhhccCccceeeEEe
Confidence 68877664 333322 35678999999999999999999888875 455555543321 1 12345688888
Q ss_pred Ecc
Q 022248 200 GTL 202 (300)
Q Consensus 200 ~~~ 202 (300)
|+-
T Consensus 184 cNP 186 (419)
T KOG2912|consen 184 CNP 186 (419)
T ss_pred cCC
Confidence 864
No 403
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=77.01 E-value=5.9 Score=34.15 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=40.4
Q ss_pred CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHh
Q 022248 192 DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISE 271 (300)
Q Consensus 192 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (300)
.+.||+|+......|.-.+ ++.++++|+|.|++-..-...+ +-++..... ...+.++.++
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p-----~l~~~~a~~A~LvvEtaKfmvd-----LrKEq~~~F----------~~kv~eLA~~ 279 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP-----ELFQALAPDAVLVVETAKFMVD-----LRKEQLQEF----------VKKVKELAKA 279 (289)
T ss_pred cCCCCEEEEhhhhHhhcch-----HHHHHhCCCCEEEEEcchhhee-----CCHHHHHHH----------HHHHHHHHHH
Confidence 4789999987655554222 3778899999998865211110 000000000 1378899999
Q ss_pred cCCcEEE
Q 022248 272 AGFSSVE 278 (300)
Q Consensus 272 aGf~~v~ 278 (300)
+||+.+.
T Consensus 280 aG~~p~~ 286 (289)
T PF14740_consen 280 AGFKPVT 286 (289)
T ss_pred CCCcccc
Confidence 9998643
No 404
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=76.97 E-value=12 Score=34.21 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=54.0
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
..+.+|+=+|+|. |......++..+.+|+.+|.++.....+.. .+. .+ .++++. -..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G~-----~v--~~l~ea---l~~aDVVI~aT 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DGF-----RV--MTMEEA---AELGDIFVTAT 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cCC-----Ee--cCHHHH---HhCCCEEEECC
Confidence 3678999999874 223333344567899999998865433322 121 11 122221 13589998643
Q ss_pred cccCcccHHHHH-HHHHHcccCCcEEEEEecc
Q 022248 203 VLCSVKDVDMTL-QEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 203 ~l~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~ 233 (300)
. . ..++ .+....+|+|++++.+...
T Consensus 276 G-----~-~~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 276 G-----N-KDVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred C-----C-HHHHHHHHHhcCCCCCEEEEcCCC
Confidence 1 2 2234 4688889999998887643
No 405
>PRK07904 short chain dehydrogenase; Provisional
Probab=76.91 E-value=17 Score=30.47 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=47.7
Q ss_pred CCCeEEEECCCCChhHHHhHh----CCCceEEEEcCCHHH-HHHHHHHHHHcCCCCCCEEEEecccCcCC---------C
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA----DTDVQVLGVDPNRKM-EKYAQTAAVAAGLPLTNFKFLQAVGEAIP---------V 190 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~----~~~~~~~giD~s~~~-~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---------~ 190 (300)
.+.+||=.|++.| ++..+++ ..+.+|+.++-++.. ++.+.+.++..+. .++.++..|+.+.. .
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~--~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA--SSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC--CceEEEEecCCChHHHHHHHHHHH
Confidence 4567888888654 4555543 345789999877654 5555555554432 36888888875432 1
Q ss_pred CCCcccEEEEcccc
Q 022248 191 SDASVDAVVGTLVL 204 (300)
Q Consensus 191 ~~~~~D~v~~~~~l 204 (300)
..+..|+++.+...
T Consensus 84 ~~g~id~li~~ag~ 97 (253)
T PRK07904 84 AGGDVDVAIVAFGL 97 (253)
T ss_pred hcCCCCEEEEeeec
Confidence 12579988865433
No 406
>PRK07109 short chain dehydrogenase; Provisional
Probab=76.89 E-value=39 Score=29.75 Aligned_cols=76 Identities=14% Similarity=0.037 Sum_probs=49.2
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 191 (300)
.+++||=.|++.| ++..+++ ..+.+++.++-++..++...+.++..+ .++.++.+|+.+.. -.
T Consensus 7 ~~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g---~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 7 GRQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG---GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4567777776444 4444443 356789999998887777766665544 36778888875531 01
Q ss_pred CCcccEEEEcccc
Q 022248 192 DASVDAVVGTLVL 204 (300)
Q Consensus 192 ~~~~D~v~~~~~l 204 (300)
-+.+|+++.+...
T Consensus 83 ~g~iD~lInnAg~ 95 (334)
T PRK07109 83 LGPIDTWVNNAMV 95 (334)
T ss_pred CCCCCEEEECCCc
Confidence 2478999876543
No 407
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=76.49 E-value=24 Score=30.55 Aligned_cols=91 Identities=22% Similarity=0.181 Sum_probs=56.0
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
.++.+||=.|+| .|..+..+++..+.++++++.+++..+.+++ .+.. .+... ... ...+.+|+|+...
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~--~~~~~----~~~-~~~~~~d~vid~~ 222 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE--TVLPD----EAE-SEGGGFDVVVEAT 222 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc--EEeCc----ccc-ccCCCCCEEEECC
Confidence 456788888753 2334444455677889999999888777765 2321 11111 111 2335699998642
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
. . ...+....+.|+++|.++...
T Consensus 223 g-----~-~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 G-----S-PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred C-----C-hHHHHHHHHHhhcCCEEEEEc
Confidence 1 1 234677888899999999754
No 408
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.44 E-value=41 Score=28.19 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=58.1
Q ss_pred CCCeEEEECCCCC-hhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------C
Q 022248 125 KAKKVLEIGIGTG-PNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V 190 (300)
Q Consensus 125 ~~~~vLDiGcG~G-~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 190 (300)
.++++|=.|++.| ..+.++++ ..+.+++.++.+....+.+++..++.+ .+.++.+|+.+.. -
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD----APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc----cceEEecCcCCHHHHHHHHHHHHH
Confidence 5678898897652 44454443 356788888887654333333322221 3346667765431 0
Q ss_pred CCCcccEEEEcccccC-------c-----ccHH-----------HHHHHHHHcccCCcEEEEEec
Q 022248 191 SDASVDAVVGTLVLCS-------V-----KDVD-----------MTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 191 ~~~~~D~v~~~~~l~~-------~-----~~~~-----------~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.-+..|+++.+..... + .+.+ .+.+.+...++.+|.++++..
T Consensus 85 ~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss 149 (258)
T PRK07533 85 EWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSY 149 (258)
T ss_pred HcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 1257899997654321 1 1111 124556667777888877653
No 409
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=76.29 E-value=9.9 Score=33.04 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=52.0
Q ss_pred CCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.+.+|+=+|.|. |......+...+.+++++|.++...+.++. .+. .++ ....+...-..+|+|+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G~-----~~~--~~~~l~~~l~~aDiVI~t~- 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MGL-----SPF--HLSELAEEVGKIDIIFNTI- 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCC-----eee--cHHHHHHHhCCCCEEEECC-
Confidence 578999999864 222223333567899999999775554432 222 222 1112211124689999742
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+. ..+-+++...++||+.++=+.
T Consensus 219 ----p~-~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 219 ----PA-LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred ----Ch-hhhhHHHHHcCCCCcEEEEEc
Confidence 11 123466778889988776544
No 410
>PRK08324 short chain dehydrogenase; Validated
Probab=75.70 E-value=21 Score=35.06 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=61.5
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----C
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~ 191 (300)
.+++||=.|++. .++..+++ ..+.+++.+|.+...++.+.+.+... .++.++.+|+.+.. + .
T Consensus 421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~----~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP----DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc----CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 346788777643 34444433 35679999999987776665544322 26777888875431 1 1
Q ss_pred CCcccEEEEcccccCccc-------------------HHHHHHHHHHcccC---CcEEEEEec
Q 022248 192 DASVDAVVGTLVLCSVKD-------------------VDMTLQEVRRVLKP---GGIYLFVEH 232 (300)
Q Consensus 192 ~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~Lkp---gG~l~~~~~ 232 (300)
-+.+|+|+.+........ ...+++.+.+.+++ +|.++++..
T Consensus 496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 246899997655322110 12345666777765 678887653
No 411
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=75.65 E-value=11 Score=32.53 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=36.5
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHH
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA 170 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~ 170 (300)
..+-+|.-||+|.-..+.+|++ ...++.+||+++..+..-+.++..
T Consensus 62 g~ghrivtigSGGcn~L~ylsr-~Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSR-APARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhc-CCceeEEEeCCHHHHHHHHHHHHH
Confidence 4677999999998777777765 455999999999988877766543
No 412
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.64 E-value=41 Score=27.88 Aligned_cols=75 Identities=19% Similarity=0.039 Sum_probs=48.3
Q ss_pred CCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----CC
Q 022248 126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SD 192 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 192 (300)
+++||=.|. +|.++..+++ ..+.++++++-++...+...+.++..+ .++.++.+|+.+.. + ..
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG---GKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 456776654 5666666655 356789999998877766655554433 36788888876431 0 11
Q ss_pred CcccEEEEcccc
Q 022248 193 ASVDAVVGTLVL 204 (300)
Q Consensus 193 ~~~D~v~~~~~l 204 (300)
+.+|+|+.....
T Consensus 80 ~~~d~vi~~a~~ 91 (258)
T PRK12429 80 GGVDILVNNAGI 91 (258)
T ss_pred CCCCEEEECCCC
Confidence 468999876543
No 413
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=75.59 E-value=61 Score=29.45 Aligned_cols=98 Identities=17% Similarity=0.143 Sum_probs=57.3
Q ss_pred CCCCeEEEEC--CCCChhHHHhHhCCC---ceEEEEcCCHHHHHHHHHHHHHc----CCCCCCEEEEec----ccCc-C-
Q 022248 124 GKAKKVLEIG--IGTGPNLKYYAADTD---VQVLGVDPNRKMEKYAQTAAVAA----GLPLTNFKFLQA----VGEA-I- 188 (300)
Q Consensus 124 ~~~~~vLDiG--cG~G~~~~~l~~~~~---~~~~giD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~----d~~~-~- 188 (300)
.++.+||=+| .+.|.++.++++..+ .+++++|.++..++.+++..... |. ...++.. +... +
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga---~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI---ELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc---eEEEECCCccccHHHHHH
Confidence 4567888886 346777777776533 37999999999988887742110 11 1111211 1100 0
Q ss_pred C-CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEE
Q 022248 189 P-VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 189 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 230 (300)
. .....+|+|+.... . ...+....+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 0 12346898886321 1 23567888999988876654
No 414
>PRK07806 short chain dehydrogenase; Provisional
Probab=75.59 E-value=34 Score=28.22 Aligned_cols=103 Identities=15% Similarity=0.000 Sum_probs=57.4
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCH-HHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNR-KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----- 190 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~-~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 190 (300)
.++++|-.|+.. .++..+++ ..+.+|++++-+. ...+.....++..+ .++.++.+|+.+.. +
T Consensus 5 ~~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 5 PGKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG---GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 456888888643 34455443 3567888877643 33344433343332 35777888876532 0
Q ss_pred CCCcccEEEEcccccCc-------------ccHHHHHHHHHHcccCCcEEEEEe
Q 022248 191 SDASVDAVVGTLVLCSV-------------KDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 191 ~~~~~D~v~~~~~l~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
.-+.+|+|+.+...... .-...+++.+.+.++.+|.++++.
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 11358888765432211 012346677777776677777764
No 415
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=75.56 E-value=39 Score=26.87 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=55.4
Q ss_pred EEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHH-------cC-CC-------CCCEEEEecccCcCCC
Q 022248 129 VLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVA-------AG-LP-------LTNFKFLQAVGEAIPV 190 (300)
Q Consensus 129 vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~-------~~-~~-------~~~~~~~~~d~~~~~~ 190 (300)
|.=||+| .++..++. ..+.+|+.+|.+++.++.+++.++. .+ +. ..++. ...|++.+
T Consensus 2 V~ViGaG--~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 2 VAVIGAG--TMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred EEEEcCC--HHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 4456665 34444432 4688999999999999988887654 11 11 12344 23343333
Q ss_pred CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 191 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
...|+|+-. +.+.++-...+++++.+++.|+-.|....
T Consensus 77 --~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 77 --VDADLVIEA-IPEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp --CTESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred --hhhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 257888742 23444445678999999999998766644
No 416
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=75.13 E-value=27 Score=30.64 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=55.8
Q ss_pred CCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----C--CCCCCccc
Q 022248 125 KAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I--PVSDASVD 196 (300)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~--~~~~~~~D 196 (300)
++.+||-.|+|. |..+..+++..+. .+++++.++...+.+++. +.. .++...-.. + -...+.+|
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~----~~~~~~~~~~~~~~~~~~~~~~~d 234 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GAT----RAVNVAKEDLRDVMAELGMTEGFD 234 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc----EEecCccccHHHHHHHhcCCCCCC
Confidence 566777777643 5566666666666 688888888766555432 221 111111011 0 01235689
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+|+.... ....+..+.+.|+++|.++....
T Consensus 235 ~v~d~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 235 VGLEMSG------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred EEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 9986321 12356888899999999999864
No 417
>PLN02494 adenosylhomocysteinase
Probab=74.80 E-value=11 Score=34.89 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=53.8
Q ss_pred CCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.+++|+=+|+|. |......++..+.+|+++|.++.....+... +. .+. +.++. . ...|+|++...
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~----G~-----~vv--~leEa-l--~~ADVVI~tTG 318 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME----GY-----QVL--TLEDV-V--SEADIFVTTTG 318 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc----CC-----eec--cHHHH-H--hhCCEEEECCC
Confidence 678999999873 3333333345677999999987643333221 21 111 22221 1 35799987432
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
-.+ .+..+....+|+||+++.+..
T Consensus 319 t~~-----vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 319 NKD-----IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred Ccc-----chHHHHHhcCCCCCEEEEcCC
Confidence 222 234778889999999999875
No 418
>PRK06181 short chain dehydrogenase; Provisional
Probab=74.68 E-value=28 Score=29.08 Aligned_cols=74 Identities=12% Similarity=0.037 Sum_probs=45.4
Q ss_pred CeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----CCC
Q 022248 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SDA 193 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~~ 193 (300)
.+||=.|+ +|.++..+++ ..+.+|++++.++...+...+.+...+ .++.++.+|+.+.. + .-+
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG---GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35776664 4445555443 356799999998876666555554433 36778888875532 0 113
Q ss_pred cccEEEEcccc
Q 022248 194 SVDAVVGTLVL 204 (300)
Q Consensus 194 ~~D~v~~~~~l 204 (300)
..|.|+.....
T Consensus 78 ~id~vi~~ag~ 88 (263)
T PRK06181 78 GIDILVNNAGI 88 (263)
T ss_pred CCCEEEECCCc
Confidence 68999876543
No 419
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=74.62 E-value=29 Score=30.93 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=58.0
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-c----cCc-C-CCCCCc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-V----GEA-I-PVSDAS 194 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d----~~~-~-~~~~~~ 194 (300)
.++.+||=.|+| .|.++..+++..+. .++++|.++..++.+++ .+.. .++.. + ... + ....+.
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~----~~i~~~~~~~~~~~~v~~~~~~g 256 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT----DCVNPKDHDKPIQQVLVEMTDGG 256 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC----EEEcccccchHHHHHHHHHhCCC
Confidence 467788888864 34555666666677 69999999988777654 2321 11111 1 100 0 011236
Q ss_pred ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEecc
Q 022248 195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHV 233 (300)
Q Consensus 195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 233 (300)
+|+|+-... . ...+....+.|+++ |+++.....
T Consensus 257 ~d~vid~~g-----~-~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 257 VDYTFECIG-----N-VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred CcEEEECCC-----C-hHHHHHHHHhhccCCCeEEEEccC
Confidence 899885321 1 23567788899887 999987643
No 420
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=74.56 E-value=18 Score=31.47 Aligned_cols=83 Identities=7% Similarity=0.085 Sum_probs=50.4
Q ss_pred CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C-CCCCcccEEEEcccccCcc
Q 022248 135 GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASVDAVVGTLVLCSVK 208 (300)
Q Consensus 135 G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~ 208 (300)
+.|.++..+++..+.++++++.++...+.+++ .+.. .++...-.++ . .....+|+|+....
T Consensus 155 ~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g----- 221 (324)
T cd08291 155 ALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE----YVLNSSDPDFLEDLKELIAKLNATIFFDAVG----- 221 (324)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc----EEEECCCccHHHHHHHHhCCCCCcEEEECCC-----
Confidence 45666677777778899999999887777654 2321 1221111111 0 12246899985332
Q ss_pred cHHHHHHHHHHcccCCcEEEEEec
Q 022248 209 DVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 209 ~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
. .......+.|+++|+++....
T Consensus 222 ~--~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 222 G--GLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred c--HHHHHHHHhhCCCCEEEEEEe
Confidence 1 123556788899999998764
No 421
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=74.54 E-value=8.3 Score=31.75 Aligned_cols=60 Identities=18% Similarity=0.101 Sum_probs=43.7
Q ss_pred CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~ 186 (300)
....-|.+||.|.|..++.+..........++.+...+.-.+...+... .+..+..+|+.
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~---~~~~IHh~D~L 108 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP---GKLRIHHGDVL 108 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC---cceEEeccccc
Confidence 3567899999999999999987656678888888877766655544333 25666666663
No 422
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=74.49 E-value=14 Score=31.81 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=44.9
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc
Q 022248 114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA 171 (300)
Q Consensus 114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~ 171 (300)
...+.+.....++..|||.-+|+|..+.+.. ..+-.++|+|+++..++.+.+++...
T Consensus 211 l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~-~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 211 LIERLIRDYSFPGDIVLDPFAGSGTTGIAAK-NLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHhcCCCCCEEeecCCCCChHHHHHH-HcCCceEEEecCHHHHHHHHHHHHhh
Confidence 3344444445688999999999998876654 46779999999999999999988654
No 423
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=73.95 E-value=27 Score=31.06 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=57.3
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----C-C-CCCCcc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I-P-VSDASV 195 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~-~-~~~~~~ 195 (300)
.++.+||-.|+| .|..+..+++..+.. +++++.++...+.+++ .+.. .++...-.. + . .+...+
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~----~vv~~~~~~~~~~l~~~~~~~~v 252 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT----HTVNASEDDAVEAVRDLTDGRGA 252 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe----EEeCCCCccHHHHHHHHcCCCCC
Confidence 356788888764 455666666666775 9999988877666532 2221 112111101 1 0 123569
Q ss_pred cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+++.... . ...+.++.+.|+++|+++....
T Consensus 253 d~vld~~~-----~-~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 253 DYAFEAVG-----R-AATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred CEEEEcCC-----C-hHHHHHHHHHhhcCCeEEEEec
Confidence 98885321 1 2346888999999999988754
No 424
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=73.91 E-value=20 Score=31.90 Aligned_cols=95 Identities=24% Similarity=0.282 Sum_probs=55.8
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----C--CCCCCcc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I--PVSDASV 195 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~--~~~~~~~ 195 (300)
.++.+||=.|+| .|.++..+++..+.. +++++.++...+.+++ .+.. .++..+-.. + ...+..+
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~----~v~~~~~~~~~~~l~~~~~~~~~ 257 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT----HTVNAAKEDAVAAIREITGGRGV 257 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc----eEecCCcccHHHHHHHHhCCCCC
Confidence 356677766653 445555566656666 9999988877766643 2221 112111111 0 1123569
Q ss_pred cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+|+..- ... ..+.++.+.|+++|.++....
T Consensus 258 d~vld~v-----g~~-~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 258 DVVVEAL-----GKP-ETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred CEEEEeC-----CCH-HHHHHHHHHHhcCCEEEEEcc
Confidence 9998532 111 246888899999999988753
No 425
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=73.84 E-value=7.1 Score=30.02 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=24.4
Q ss_pred EECCCCC--hhHHHhH---hCCCceEEEEcCCHHHHHHHHHH
Q 022248 131 EIGIGTG--PNLKYYA---ADTDVQVLGVDPNRKMEKYAQTA 167 (300)
Q Consensus 131 DiGcG~G--~~~~~l~---~~~~~~~~giD~s~~~~~~a~~~ 167 (300)
|||++.| .....+. ..+..+++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5544443 24677899999999999999888
No 426
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=73.57 E-value=16 Score=27.80 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=45.2
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-------CcC---CCCCCcccEEEEcccccCcccHHHHHH
Q 022248 146 DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-------EAI---PVSDASVDAVVGTLVLCSVKDVDMTLQ 215 (300)
Q Consensus 146 ~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-------~~~---~~~~~~~D~v~~~~~l~~~~~~~~~l~ 215 (300)
..+.+|+.++-.+ -++..++ .+ +.+...+- ... +...+.+|+|+..-= ..+....++
T Consensus 19 ~~g~~V~l~~r~~-~~~~~~~----~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK---a~~~~~~l~ 85 (151)
T PF02558_consen 19 QAGHDVTLVSRSP-RLEAIKE----QG-----LTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK---AYQLEQALQ 85 (151)
T ss_dssp HTTCEEEEEESHH-HHHHHHH----HC-----EEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS---GGGHHHHHH
T ss_pred HCCCceEEEEccc-cHHhhhh----ee-----EEEEecccceecccccccCcchhccCCCcEEEEEec---ccchHHHHH
Confidence 3678999999877 4444332 22 22222220 001 123578999997531 135567889
Q ss_pred HHHHcccCCcEEEEEecc
Q 022248 216 EVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 216 ~~~~~LkpgG~l~~~~~~ 233 (300)
.+.+.+.|+..+++..+.
T Consensus 86 ~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 86 SLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp HHCTGEETTEEEEEESSS
T ss_pred HHhhccCCCcEEEEEeCC
Confidence 999999999888887754
No 427
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=73.42 E-value=89 Score=30.00 Aligned_cols=79 Identities=10% Similarity=0.049 Sum_probs=47.4
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCC------CCCCEEEEecccCcCC-C--CC
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGL------PLTNFKFLQAVGEAIP-V--SD 192 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~d~~~~~-~--~~ 192 (300)
.+++||-.|+ +|.++..+++ ..+.+|++++-+...++...+.+....+ ...++.++.+|+.+.. + .-
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 4566776665 4556666554 3577899998887766554443322111 0135788899987632 1 11
Q ss_pred CcccEEEEcccc
Q 022248 193 ASVDAVVGTLVL 204 (300)
Q Consensus 193 ~~~D~v~~~~~l 204 (300)
+..|+||+....
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 468998876543
No 428
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.31 E-value=28 Score=30.09 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=54.2
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 191 (300)
.+..||==|.|.| +++.++. +.+.++...|++++..+...+.++..| ++....+|..+.. -+
T Consensus 37 ~g~~vLITGgg~G-lGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g----~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 37 SGEIVLITGGGSG-LGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG----EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred cCCEEEEeCCCch-HHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC----ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 5677888888887 4444432 356689999999988888887777654 5777777775431 23
Q ss_pred CCcccEEEEcccccCc
Q 022248 192 DASVDAVVGTLVLCSV 207 (300)
Q Consensus 192 ~~~~D~v~~~~~l~~~ 207 (300)
-+..|+++.+..+-+.
T Consensus 112 ~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTG 127 (300)
T ss_pred cCCceEEEeccccccC
Confidence 4689999987655433
No 429
>PRK06701 short chain dehydrogenase; Provisional
Probab=73.06 E-value=44 Score=28.70 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=58.5
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCH-HHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CC----
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNR-KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS---- 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~-~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---- 191 (300)
++++||-.|++.| ++..+++ ..+.+++.++.+. ...+.....++..+ .++.++.+|+.+.. +.
T Consensus 45 ~~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 45 KGKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG---VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 4678888886554 4444443 2567888887764 23333333343333 35778888875432 11
Q ss_pred -CCcccEEEEcccccC----cc-----c-----------HHHHHHHHHHcccCCcEEEEEec
Q 022248 192 -DASVDAVVGTLVLCS----VK-----D-----------VDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 192 -~~~~D~v~~~~~l~~----~~-----~-----------~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
-+.+|+|+.+..... +. + ...+++.+.+.++++|.++++..
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 146898886543321 10 0 12345566666777888887653
No 430
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=72.88 E-value=16 Score=35.40 Aligned_cols=89 Identities=12% Similarity=0.150 Sum_probs=55.8
Q ss_pred CCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEE
Q 022248 126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAV 198 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v 198 (300)
..+|+=+||| .++..+++ ..+..++.+|.+++.++.+++. ....+.+|..+.. ..-+..|++
T Consensus 400 ~~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~---------g~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF---------GMKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc---------CCeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 3567777766 34444443 4577899999999998888652 3467888886642 123467887
Q ss_pred EEcccccCcccH--HHHHHHHHHcccCCcEEEEE
Q 022248 199 VGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFV 230 (300)
Q Consensus 199 ~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~ 230 (300)
++.. +|. ...+-...+.+.|+-.+++-
T Consensus 469 vv~~-----~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 469 INAI-----DDPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred EEEe-----CCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 7643 222 22344455556777666653
No 431
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=72.64 E-value=32 Score=30.19 Aligned_cols=92 Identities=24% Similarity=0.361 Sum_probs=54.9
Q ss_pred CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc---C-CCCCCcccE
Q 022248 124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA---I-PVSDASVDA 197 (300)
Q Consensus 124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~-~~~~~~~D~ 197 (300)
.++.+||=.|+ +.|..+..+++..+.++++++.+. ..+.++ ..+. . .+...+-.. . ......+|+
T Consensus 176 ~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~----~~g~---~-~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08274 176 GAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVR----ALGA---D-TVILRDAPLLADAKALGGEPVDV 246 (350)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHH----hcCC---e-EEEeCCCccHHHHHhhCCCCCcE
Confidence 46778888886 455666667777788888888554 344332 2332 1 111111000 0 112356999
Q ss_pred EEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248 198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 231 (300)
|+.... . ..+..+.+.|+++|.++.+.
T Consensus 247 vi~~~g-----~--~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 247 VADVVG-----G--PLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred EEecCC-----H--HHHHHHHHHhccCCEEEEec
Confidence 985432 1 24678899999999998765
No 432
>PRK07774 short chain dehydrogenase; Provisional
Probab=72.29 E-value=38 Score=27.95 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=47.1
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC----------C
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----------S 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----------~ 191 (300)
.++++|=.| |+|.++..+++ ..+.++++++-++...+...+.+...+ .++.++..|+.+..- .
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG---GTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456788777 44555555554 356799999988766655555444332 256677888765420 1
Q ss_pred CCcccEEEEcccc
Q 022248 192 DASVDAVVGTLVL 204 (300)
Q Consensus 192 ~~~~D~v~~~~~l 204 (300)
-+.+|+|+.+...
T Consensus 81 ~~~id~vi~~ag~ 93 (250)
T PRK07774 81 FGGIDYLVNNAAI 93 (250)
T ss_pred hCCCCEEEECCCC
Confidence 1358999976654
No 433
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=72.00 E-value=9.6 Score=32.06 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=35.7
Q ss_pred HHHHHhhcC-CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHH
Q 022248 116 SQLFDNLRG-KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV 169 (300)
Q Consensus 116 ~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~ 169 (300)
..+.+.++. +..+++|+-||+|..+..+.. .+..++.-|+++..+...+..++
T Consensus 10 ~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 10 KWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp HHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHh
Confidence 334444443 688999999999999888764 56689999999988887775444
No 434
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=72.00 E-value=17 Score=25.56 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=44.4
Q ss_pred ECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccCcccHH
Q 022248 132 IGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211 (300)
Q Consensus 132 iGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~ 211 (300)
+-||+|..+..+ ++..++.+++.++ .+++...+.....-....+|+|++. |...
T Consensus 4 ~~Cg~G~sTS~~-----------------~~ki~~~~~~~~~---~~~v~~~~~~~~~~~~~~~Diil~~------Pqv~ 57 (96)
T cd05564 4 LVCSAGMSTSIL-----------------VKKMKKAAEKRGI---DAEIEAVPESELEEYIDDADVVLLG------PQVR 57 (96)
T ss_pred EEcCCCchHHHH-----------------HHHHHHHHHHCCC---ceEEEEecHHHHHHhcCCCCEEEEC------hhHH
Confidence 458888654433 3445666666665 3667777665554334679999975 4444
Q ss_pred HHHHHHHHcccC-CcEEEEEe
Q 022248 212 MTLQEVRRVLKP-GGIYLFVE 231 (300)
Q Consensus 212 ~~l~~~~~~Lkp-gG~l~~~~ 231 (300)
..+.++.+.+.+ +-.+.+.+
T Consensus 58 ~~~~~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 58 YMLDEVKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHHHHHHHhccCCCcEEEcC
Confidence 456777765544 44455544
No 435
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=71.98 E-value=29 Score=32.26 Aligned_cols=89 Identities=18% Similarity=0.111 Sum_probs=53.3
Q ss_pred CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
..+++|+=+|+|. |......+...+.+|+++|.++.....+.. .+. .+ .+++++ -...|+|++..
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G~-----~~--~~leel---l~~ADIVI~at 317 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EGY-----QV--VTLEDV---VETADIFVTAT 317 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cCc-----ee--ccHHHH---HhcCCEEEECC
Confidence 4688999999985 333333333567899999887754433322 121 11 122222 14689998753
Q ss_pred cccCcccHHHHH-HHHHHcccCCcEEEEEec
Q 022248 203 VLCSVKDVDMTL-QEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 203 ~l~~~~~~~~~l-~~~~~~LkpgG~l~~~~~ 232 (300)
.-.+ ++ .+....+|||++|+-+..
T Consensus 318 Gt~~------iI~~e~~~~MKpGAiLINvGr 342 (476)
T PTZ00075 318 GNKD------IITLEHMRRMKNNAIVGNIGH 342 (476)
T ss_pred Cccc------ccCHHHHhccCCCcEEEEcCC
Confidence 2212 23 578888999999888763
No 436
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=71.74 E-value=24 Score=30.12 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=57.3
Q ss_pred CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC------CCCCCcc
Q 022248 124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI------PVSDASV 195 (300)
Q Consensus 124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~ 195 (300)
.++.+||-.|| +.|..+..+++..+..+++++.++...+.+++ .+.. . ++...-... ......+
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--~--~~~~~~~~~~~~i~~~~~~~~~ 209 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA----LGAD--H--VIDYRDPDLRERVKALTGGRGV 209 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH----cCCc--e--eeecCCccHHHHHHHHcCCCCc
Confidence 46788999997 35556666666678889999988877666543 2221 1 111111111 0123468
Q ss_pred cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+++....- ..+..+.+.++++|.++....
T Consensus 210 d~v~~~~g~-------~~~~~~~~~~~~~g~~v~~~~ 239 (323)
T cd08241 210 DVVYDPVGG-------DVFEASLRSLAWGGRLLVIGF 239 (323)
T ss_pred EEEEECccH-------HHHHHHHHhhccCCEEEEEcc
Confidence 988864321 235667888999999887653
No 437
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=71.49 E-value=64 Score=28.34 Aligned_cols=94 Identities=21% Similarity=0.218 Sum_probs=55.9
Q ss_pred CCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----C-CCCCCcccE
Q 022248 125 KAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I-PVSDASVDA 197 (300)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~-~~~~~~~D~ 197 (300)
++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++. +.. .++...-.. + ....+.+|+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----GAD----VVVNGSDPDAAKRIIKAAGGGVDA 246 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc----EEecCCCccHHHHHHHHhCCCCcE
Confidence 56778888764 34555556666676 788999888777666432 221 111111001 1 011126899
Q ss_pred EEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
++.... ....+.+..+.|+++|+++....
T Consensus 247 vid~~g------~~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 247 VIDFVN------NSATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred EEECCC------CHHHHHHHHHHhhcCCeEEEECC
Confidence 885321 12347888999999999997653
No 438
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=71.31 E-value=45 Score=25.67 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=56.0
Q ss_pred CCCeEEEECCCCChhHHHhHh------CCCceEEEEcCCHHHHHHHHHHHHHcCCC------------CCCEEEEeccc-
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA------DTDVQVLGVDPNRKMEKYAQTAAVAAGLP------------LTNFKFLQAVG- 185 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~------~~~~~~~giD~s~~~~~~a~~~~~~~~~~------------~~~~~~~~~d~- 185 (300)
...++||+-+|.|..-..+-+ ....++..+.+.....+...+.++..+.. ...++..+-..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~ 83 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATY 83 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHH
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHH
Confidence 446899999999965443321 25668999999999888888877643211 00111111100
Q ss_pred ---CcCCCCCCcccEEEEcccccCcccHHHH-HHHHHHcccCCc--EEEEEeccc
Q 022248 186 ---EAIPVSDASVDAVVGTLVLCSVKDVDMT-LQEVRRVLKPGG--IYLFVEHVA 234 (300)
Q Consensus 186 ---~~~~~~~~~~D~v~~~~~l~~~~~~~~~-l~~~~~~LkpgG--~l~~~~~~~ 234 (300)
...|..-..||+||+.. .|+.|+..+ +.-..+.+...| .++++..++
T Consensus 84 ~~~~~~p~~~~~yd~II~DE--cH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 84 GHFLLNPCRLKNYDVIIMDE--CHFTDPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHTSSCTTS-SEEEECT--TT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HHHhcCcccccCccEEEEec--cccCCHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 00133446799999977 455676543 233333334444 666666544
No 439
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.28 E-value=24 Score=30.31 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=59.2
Q ss_pred CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC-cC-CCCCCcccEEE
Q 022248 124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE-AI-PVSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~-~~-~~~~~~~D~v~ 199 (300)
.++.+||=.|+ +.|..+..+++..+.++++++.++...+.+++ .+.. .+-....+.. .+ .. ...+|+++
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~i~~~-~~~~d~vl 213 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD--EVVIDDGAIAEQLRAA-PGGFDKVL 213 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc--EEEecCccHHHHHHHh-CCCceEEE
Confidence 45678887775 56677777787778899999988876665532 2321 1111011110 01 12 35699998
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.... . ..+.+..+.|+++|+++....
T Consensus 214 ~~~~-----~--~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 214 ELVG-----T--ATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred ECCC-----h--HHHHHHHHHhccCCEEEEEcc
Confidence 5322 1 246888899999999988654
No 440
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=71.17 E-value=27 Score=31.06 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=56.8
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEeccc---CcC-CCCCCccc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVG---EAI-PVSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~---~~~-~~~~~~~D 196 (300)
.++.+||=+|+| .|.++..+++..+. +++++|.++...+.+++. +.. .+ .....+. +.+ ......+|
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~--~~i~~~~~~~~~~~~~~~~~~~g~d 256 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GAT--DFINPKDSDKPVSEVIREMTGGGVD 256 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCC--cEeccccccchHHHHHHHHhCCCCC
Confidence 467788888864 34455556666676 799999988877777542 221 11 1111000 000 01124689
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEecc
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHV 233 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 233 (300)
+|+-.-. . ...+....+.|+++ |.++.+...
T Consensus 257 ~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 257 YSFECTG-----N-ADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred EEEECCC-----C-hHHHHHHHHhcccCCCEEEEEcCC
Confidence 9885321 1 23567788889885 999887643
No 441
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=71.13 E-value=12 Score=32.52 Aligned_cols=136 Identities=17% Similarity=0.114 Sum_probs=64.6
Q ss_pred CCCCeEEEECCCCChhHHHhH---hCCCceEEEEcCCHH--HHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEE
Q 022248 124 GKAKKVLEIGIGTGPNLKYYA---ADTDVQVLGVDPNRK--MEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV 198 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~---~~~~~~~~giD~s~~--~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 198 (300)
+...+||=+|+|. ++..++ ++.+.+|+++|--.. +.+.|-+. .-+....++...--...+..|.|
T Consensus 10 ~~a~kvmLLGSGE--LGKEvaIe~QRLG~eViAVDrY~~APAmqVAhrs--------~Vi~MlD~~al~avv~rekPd~I 79 (394)
T COG0027 10 PQATKVMLLGSGE--LGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRS--------YVIDMLDGDALRAVVEREKPDYI 79 (394)
T ss_pred CCCeEEEEecCCc--cchHHHHHHHhcCCEEEEecCcCCChhhhhhhhe--------eeeeccCHHHHHHHHHhhCCCee
Confidence 4567888888775 444432 368999999995332 22222211 01111122211111344667877
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhh---hhhcCCcccchHHHHHHHhcCCc
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQ---QIVSDGCHLTRQTGNNISEAGFS 275 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~aGf~ 275 (300)
+ +..+.+-.....-|...|+-++-+..-..-.....-++++..... .......-+.+++.+..++.||-
T Consensus 80 V--------pEiEAI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfP 151 (394)
T COG0027 80 V--------PEIEAIATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFP 151 (394)
T ss_pred e--------ehhhhhhHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCC
Confidence 7 444444344444455666665532111110111111111111111 11111234568999999999998
Q ss_pred EE
Q 022248 276 SV 277 (300)
Q Consensus 276 ~v 277 (300)
.+
T Consensus 152 cv 153 (394)
T COG0027 152 CV 153 (394)
T ss_pred ee
Confidence 64
No 442
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=70.82 E-value=10 Score=32.18 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=39.8
Q ss_pred CCCCeEEEECCCCChhHHHhHhC------CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~ 188 (300)
.+...++|+|||.|.++.+++.. ....++.||-...-. .+..+++..... ..+.=+..|+.++
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~-~~~~R~riDI~dl 85 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESE-PKFERLRIDIKDL 85 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCC-CceEEEEEEeecc
Confidence 46779999999999999999862 356899999755333 333333333210 1344455555554
No 443
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=70.62 E-value=33 Score=29.98 Aligned_cols=95 Identities=21% Similarity=0.243 Sum_probs=57.2
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C-CCCCcc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASV 195 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~ 195 (300)
.++.+||=.|+| .|..+..+++..+.+ +++++.++...+.+++ .+.. .++..+-... . .....+
T Consensus 164 ~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~~~~i~~~~~~~~v 235 (343)
T cd08235 164 KPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD----YTIDAAEEDLVEKVRELTDGRGA 235 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc----EEecCCccCHHHHHHHHhCCcCC
Confidence 456778777764 555666666667777 8899888887776643 2221 1121110000 0 123458
Q ss_pred cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+|+....- ...+..+.+.|+++|.++....
T Consensus 236 d~vld~~~~------~~~~~~~~~~l~~~g~~v~~~~ 266 (343)
T cd08235 236 DVVIVATGS------PEAQAQALELVRKGGRILFFGG 266 (343)
T ss_pred CEEEECCCC------hHHHHHHHHHhhcCCEEEEEec
Confidence 999853221 2346778899999999998653
No 444
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.48 E-value=15 Score=26.82 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=53.2
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC-CCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~ 203 (300)
..++|+|+|-|-=......++..+..++++|+.+. .|. .-+.+...|..+.... =...|+|.+.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~----------~g~~~v~DDitnP~~~iY~~A~lIYSi-- 77 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP----------EGLRFVVDDITNPNISIYEGADLIYSI-- 77 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc----------ccceEEEccCCCccHHHhhCccceeec--
Confidence 34599999987643333333346789999999886 111 2567888887664321 1345676653
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
..-++....+-++.+.+ |..+++.....
T Consensus 78 -RpppEl~~~ildva~aV--ga~l~I~pL~G 105 (129)
T COG1255 78 -RPPPELQSAILDVAKAV--GAPLYIKPLTG 105 (129)
T ss_pred -CCCHHHHHHHHHHHHhh--CCCEEEEecCC
Confidence 33344444444555433 45566655444
No 445
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=70.26 E-value=37 Score=30.26 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=56.7
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc-----cC-cC-CCCCCc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-----GE-AI-PVSDAS 194 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d-----~~-~~-~~~~~~ 194 (300)
.++.+||=.|+| .|.++..+++..+. +++++|.+++..+.+++ .+.. .++... .. .+ ....+.
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~~~v~~~~~~~ 257 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVT----EFVNPKDHDKPVQEVIAEMTGGG 257 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----eEEcccccchhHHHHHHHHhCCC
Confidence 467888888763 33455556666676 79999999887777644 2321 111111 00 00 011236
Q ss_pred ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEecc
Q 022248 195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHV 233 (300)
Q Consensus 195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 233 (300)
+|+++-.-. ....+....+.+++| |++++....
T Consensus 258 ~d~vid~~G------~~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 258 VDYSFECTG------NIDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred CCEEEECCC------ChHHHHHHHHHhhcCCCEEEEECcC
Confidence 888885321 123457778888996 999887653
No 446
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=69.93 E-value=3.4 Score=36.00 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHcccCCcEEEEEecccCCCchHHH
Q 022248 209 DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLK 242 (300)
Q Consensus 209 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 242 (300)
.....|..+.++|+|||+++++.++..++.....
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~ 251 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSLEDRIVKN 251 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHH
Confidence 3467889999999999999999988776544433
No 447
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=69.51 E-value=41 Score=29.51 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=57.4
Q ss_pred CCCCeEEEECCCC-ChhHHHhH-hC-CCceEEEEcCCHHHHHHHHHHHHHc-CCCCCCEEEEecccCcCCCCCCcccEEE
Q 022248 124 GKAKKVLEIGIGT-GPNLKYYA-AD-TDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEAIPVSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~-~~-~~~~~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 199 (300)
+.+.+|.=||+|. |......+ .. ...++..+|+++..++-...-+... .+. .++.+...+.+++ ...|+|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~~~~i~~~~~~~~----~~adivI 78 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-SPTKIYAGDYSDC----KDADLVV 78 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-CCeEEEeCCHHHh----CCCCEEE
Confidence 3567899999975 54333333 22 3348999999877654433333322 111 2455555554443 4678888
Q ss_pred EcccccCcc--cH-------HHHHHHHHHcc---cCCcEEEEEe
Q 022248 200 GTLVLCSVK--DV-------DMTLQEVRRVL---KPGGIYLFVE 231 (300)
Q Consensus 200 ~~~~l~~~~--~~-------~~~l~~~~~~L---kpgG~l~~~~ 231 (300)
.......-+ +. ..+++++...+ .|+|+++++.
T Consensus 79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 765543222 11 13455544444 3899988876
No 448
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=68.94 E-value=29 Score=29.88 Aligned_cols=95 Identities=21% Similarity=0.206 Sum_probs=52.3
Q ss_pred CeEEEECCCC-C-hhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc----------CC-C-------CCCEEEEecccC
Q 022248 127 KKVLEIGIGT-G-PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA----------GL-P-------LTNFKFLQAVGE 186 (300)
Q Consensus 127 ~~vLDiGcG~-G-~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~----------~~-~-------~~~~~~~~~d~~ 186 (300)
.+|.=||+|. | .++..++ ..+.+|+.+|.+++.++.+++.+... +. . ..++.+. .+.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA-RTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 3577788874 2 2223333 35679999999999998776644321 10 0 0011111 1211
Q ss_pred cCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEE
Q 022248 187 AIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYL 228 (300)
Q Consensus 187 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 228 (300)
. -...|+|+.. +.........+++++.+.++|+..++
T Consensus 82 ~----~~~aDlViea-v~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEA-VPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEc-CcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 1346888863 22222234567888888888876543
No 449
>PRK09072 short chain dehydrogenase; Provisional
Probab=68.51 E-value=66 Score=26.89 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=47.2
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C----CC
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----SD 192 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~----~~ 192 (300)
++.++|=.|++.| ++..+++ ..+.+|++++.++..++.....+ ..+ .++.++.+|+.+.. + ..
T Consensus 4 ~~~~vlItG~s~~-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 4 KDKRVLLTGASGG-IGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP---GRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC---CceEEEEccCCCHHHHHHHHHHHHhc
Confidence 4567888876654 4444433 35779999999887776665544 221 36788888876532 0 12
Q ss_pred CcccEEEEcccc
Q 022248 193 ASVDAVVGTLVL 204 (300)
Q Consensus 193 ~~~D~v~~~~~l 204 (300)
+..|.|+.....
T Consensus 79 ~~id~lv~~ag~ 90 (263)
T PRK09072 79 GGINVLINNAGV 90 (263)
T ss_pred CCCCEEEECCCC
Confidence 468999876544
No 450
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=68.22 E-value=81 Score=27.43 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=56.5
Q ss_pred CeEEEECCCC-C-hhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC---CCCEEEEecccCcCCCCCCcccEEEEc
Q 022248 127 KKVLEIGIGT-G-PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP---LTNFKFLQAVGEAIPVSDASVDAVVGT 201 (300)
Q Consensus 127 ~~vLDiGcG~-G-~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D~v~~~ 201 (300)
.+|+=+|+|. | .++..|+ +.+..|+.++-+.+-++..++. .|+. ............ .+-..+.||+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~-~~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~-~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLA-RAGLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAE-TADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHH-hCCCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCC-CcccccccCEEEEE
Confidence 4688899873 4 4555555 4567899999876544444331 1210 000001110000 11123579988864
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA 235 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 235 (300)
-=- .+....++.+...+.++..++...+.-.
T Consensus 78 vK~---~~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 78 CKA---YDAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred CCH---HhHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 211 2455678889999999998888775543
No 451
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=67.89 E-value=44 Score=29.23 Aligned_cols=95 Identities=23% Similarity=0.341 Sum_probs=54.8
Q ss_pred CCCCeEEEECC-CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEc
Q 022248 124 GKAKKVLEIGI-GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT 201 (300)
Q Consensus 124 ~~~~~vLDiGc-G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~ 201 (300)
.++.+||=.|+ +.|..+..+++..+.++++++.++...+.+++ .+. +. ++...-... ....+.+|+|+..
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~--~~--vi~~~~~~~~~~~~~~~d~v~~~ 239 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----LGA--DE--FIATKDPEAMKKAAGSLDLIIDT 239 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCC--cE--EecCcchhhhhhccCCceEEEEC
Confidence 34566666776 24445555566677899999998877766643 221 11 111110000 0113568988853
Q ss_pred ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
..-. ..+..+.+.|+++|.++....
T Consensus 240 ~g~~------~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 240 VSAS------HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred CCCc------chHHHHHHHhcCCCEEEEEec
Confidence 2211 235778899999999998764
No 452
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=67.75 E-value=46 Score=29.13 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=54.0
Q ss_pred CCCeEEEECCC-CChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc----CcCCCCCCcccEE
Q 022248 125 KAKKVLEIGIG-TGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG----EAIPVSDASVDAV 198 (300)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~D~v 198 (300)
++.+||=.|+| .|..+..+++..+ ..++++|.++.....+++ .+.. .-+.....+. ..+ .....+|+|
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~~~~~~~~i~~~-~~~~~~d~v 239 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGAT-HTVNSAKGDAIEQVLEL-TDGRGVDVV 239 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC-ceeccccccHHHHHHHH-hCCCCCCEE
Confidence 55666666653 2334445555556 688899988876665553 2221 0111111111 111 123469999
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+... .. ...+..+.+.|+++|.++....
T Consensus 240 ld~~-----g~-~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 240 IEAV-----GI-PATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred EECC-----CC-HHHHHHHHHhccCCcEEEEecc
Confidence 8532 12 2246888899999999987653
No 453
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.47 E-value=38 Score=31.18 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=46.9
Q ss_pred CCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCccc
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D 196 (300)
....+|+=+|+ |.++..+++ ..+..++.+|.+++.++.+++.. ..+.++.+|..+.. ..-..+|
T Consensus 229 ~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-------~~~~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 229 KPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-------PNTLVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-------CCCeEEECCCCCHHHHHhcCCccCC
Confidence 34577888877 556666655 35779999999999887776542 24667888875431 2235688
Q ss_pred EEEEc
Q 022248 197 AVVGT 201 (300)
Q Consensus 197 ~v~~~ 201 (300)
.|++.
T Consensus 300 ~vi~~ 304 (453)
T PRK09496 300 AFIAL 304 (453)
T ss_pred EEEEC
Confidence 88764
No 454
>PRK08267 short chain dehydrogenase; Provisional
Probab=67.42 E-value=41 Score=28.03 Aligned_cols=72 Identities=11% Similarity=-0.070 Sum_probs=45.4
Q ss_pred CeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CC------C
Q 022248 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS------D 192 (300)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~------~ 192 (300)
+++|=.|++. .++..+++ ..+.+++.++.++..++...+... + .++.++.+|+.+.. +. .
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~---~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A---GNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C---CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3577777654 44444443 356799999988877666554432 1 36788888886532 00 3
Q ss_pred CcccEEEEcccc
Q 022248 193 ASVDAVVGTLVL 204 (300)
Q Consensus 193 ~~~D~v~~~~~l 204 (300)
+.+|+|+.+...
T Consensus 76 ~~id~vi~~ag~ 87 (260)
T PRK08267 76 GRLDVLFNNAGI 87 (260)
T ss_pred CCCCEEEECCCC
Confidence 578999976544
No 455
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.40 E-value=30 Score=29.66 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=52.2
Q ss_pred eEEEECCCC--ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHH-------HHcCC-CC-------CCEEEEecccCcCCC
Q 022248 128 KVLEIGIGT--GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAA-------VAAGL-PL-------TNFKFLQAVGEAIPV 190 (300)
Q Consensus 128 ~vLDiGcG~--G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~-------~~~~~-~~-------~~~~~~~~d~~~~~~ 190 (300)
+|.=||+|. +.++..++. .+.+|+++|.+++.++.+++.+ .+.+. .. .++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~-~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAV-AGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHH-CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 466677763 233333333 4669999999999987665432 22221 10 02221 223221
Q ss_pred CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEE
Q 022248 191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYL 228 (300)
Q Consensus 191 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 228 (300)
-+..|+|+.. +.....-...++.++.+.++|+..+.
T Consensus 80 -~~~aDlVi~a-v~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 80 -LKDADLVIEA-ATENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred -hccCCeeeec-ccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 2457888853 22222223478899999999887663
No 456
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=67.30 E-value=17 Score=30.89 Aligned_cols=77 Identities=27% Similarity=0.288 Sum_probs=43.0
Q ss_pred HHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccCcccHHHHHHHHH
Q 022248 140 LKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVR 218 (300)
Q Consensus 140 ~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~ 218 (300)
++.|.+. ...+++|+|.++..++.|.+. |+ +.-...+.+.+ ..+|+|+..-- +.....+++++.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~----~~~~~~~~~~~----~~~DlvvlavP---~~~~~~~l~~~~ 66 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GI----IDEASTDIEAV----EDADLVVLAVP---VSAIEDVLEEIA 66 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TS----SSEEESHHHHG----GCCSEEEE-S----HHHHHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CC----eeeccCCHhHh----cCCCEEEEcCC---HHHHHHHHHHhh
Confidence 3455443 458999999999988777643 22 11111111222 34699987542 234466788888
Q ss_pred HcccCCcEEEEEe
Q 022248 219 RVLKPGGIYLFVE 231 (300)
Q Consensus 219 ~~LkpgG~l~~~~ 231 (300)
..+++|+.+.=+.
T Consensus 67 ~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 67 PYLKPGAIVTDVG 79 (258)
T ss_dssp CGS-TTSEEEE--
T ss_pred hhcCCCcEEEEeC
Confidence 8888887555444
No 457
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=67.04 E-value=39 Score=28.86 Aligned_cols=90 Identities=26% Similarity=0.308 Sum_probs=57.1
Q ss_pred CCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 125 KAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 125 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
++.+||=.|+ +.|..+..+++..+.++++++.++...+.+++ .+.. .+ +.. ..++ .++.+|+++...
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--~~-~~~--~~~~--~~~~~d~vl~~~ 200 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE----LGAA--EV-VVG--GSEL--SGAPVDLVVDSV 200 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc--EE-Eec--cccc--cCCCceEEEECC
Confidence 4678887777 45566666666677899999988876666654 2321 11 111 1111 224689988542
Q ss_pred cccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
. . ..+.+..+.|+++|+++....
T Consensus 201 g-----~--~~~~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 201 G-----G--PQLARALELLAPGGTVVSVGS 223 (305)
T ss_pred C-----c--HHHHHHHHHhcCCCEEEEEec
Confidence 1 1 246888999999999998764
No 458
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=66.56 E-value=51 Score=31.63 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=41.5
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 202 (300)
+..+|| +.||+|.-+..+++ ...++.+++.+++ ++..++++.+.+-..+.+|+|++..
T Consensus 505 k~mKIL-vaCGsGiGTStmva----------------~kIkk~Lke~GI~---veV~~~~Vsev~s~~~~aDIIVtt~ 562 (602)
T PRK09548 505 KPVRIL-AVCGQGQGSSMMMK----------------MKIKKYLDKRGIP---IIMDSCAVNDYKGKLETIDIIVCSK 562 (602)
T ss_pred cccEEE-EECCCCchHHHHHH----------------HHHHHHHHHcCCC---eEEEEechHhCcccCCCCCEEEEcc
Confidence 456777 56999966555542 4456677888873 6778888888876667799999865
No 459
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=66.39 E-value=43 Score=29.24 Aligned_cols=95 Identities=17% Similarity=0.230 Sum_probs=56.2
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEEE
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~ 199 (300)
.++.+||=.|+| .|..+..+++..+.+++.++.++...+.+++ .+.. .++...-..+. .....+|+++
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~~~~~~~~~~d~vi 233 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGAH----HYIDTSKEDVAEALQELGGAKLIL 233 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCCc----EEecCCCccHHHHHHhcCCCCEEE
Confidence 356788888853 3445555566677889999998877776643 2221 11111100100 0113588888
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.... ....+....+.|+++|.++....
T Consensus 234 ~~~g------~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 234 ATAP------NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred ECCC------chHHHHHHHHHcccCCEEEEEec
Confidence 5311 12356888999999999998764
No 460
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=66.37 E-value=19 Score=27.74 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=50.7
Q ss_pred HHHHHHhhcCCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CC---
Q 022248 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IP--- 189 (300)
Q Consensus 115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~--- 189 (300)
+.....+...-.+-|||+|=|+|+.=-+|.+ .++-.++.+|-.-..-- ... ++.-.++.+|+.+ ++
T Consensus 18 L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp--------~~~-P~~~~~ilGdi~~tl~~~~ 88 (160)
T PF12692_consen 18 LNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHP--------SST-PPEEDLILGDIRETLPALA 88 (160)
T ss_dssp HHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-G--------GG----GGGEEES-HHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCC--------CCC-CchHheeeccHHHHhHHHH
Confidence 4444555555567899999999988777766 57778999985321100 011 1233456676643 22
Q ss_pred CCCCcccEEEEcccccCcccHHH----HHHHHHHcccCCcEEEEEe
Q 022248 190 VSDASVDAVVGTLVLCSVKDVDM----TLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 190 ~~~~~~D~v~~~~~l~~~~~~~~----~l~~~~~~LkpgG~l~~~~ 231 (300)
+-....-++......++-..-.. +-.-+..+|.|||+++-..
T Consensus 89 ~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~ 134 (160)
T PF12692_consen 89 RFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQ 134 (160)
T ss_dssp HH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred hcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 22344455555444443221111 2345667889999877643
No 461
>PRK06128 oxidoreductase; Provisional
Probab=66.09 E-value=86 Score=26.95 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=58.3
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHH--HHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C----
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRK--MEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V---- 190 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~--~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 190 (300)
.+++||=.|++.| ++..+++ ..+.+++.++.+.. ..+...+.++..+ .++.++.+|+.+.. +
T Consensus 54 ~~k~vlITGas~g-IG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 54 QGRKALITGADSG-IGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG---RKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred CCCEEEEecCCCc-HHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHHHHHHH
Confidence 4568888886444 4455443 35667777665432 2333333343333 35677888876531 0
Q ss_pred -CCCcccEEEEcccccC----cc-----cH-----------HHHHHHHHHcccCCcEEEEEec
Q 022248 191 -SDASVDAVVGTLVLCS----VK-----DV-----------DMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 191 -~~~~~D~v~~~~~l~~----~~-----~~-----------~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.-+..|+++.+..... +. +. ..+++.+.+.++++|.++++..
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 1146899997665321 11 11 1345667777788888887643
No 462
>PRK06182 short chain dehydrogenase; Validated
Probab=66.03 E-value=62 Score=27.26 Aligned_cols=70 Identities=16% Similarity=0.036 Sum_probs=42.7
Q ss_pred CCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----CC
Q 022248 126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SD 192 (300)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 192 (300)
+++||=.|++ |.++..+++ ..+.+|++++-++..++.... ..+.++.+|+.+.. + ..
T Consensus 3 ~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~---------~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 3 KKVALVTGAS-SGIGKATARRLAAQGYTVYGAARRVDKMEDLAS---------LGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh---------CCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 4577877754 445555554 357799999988765543221 14667777875532 1 12
Q ss_pred CcccEEEEccccc
Q 022248 193 ASVDAVVGTLVLC 205 (300)
Q Consensus 193 ~~~D~v~~~~~l~ 205 (300)
+.+|+++.+....
T Consensus 73 ~~id~li~~ag~~ 85 (273)
T PRK06182 73 GRIDVLVNNAGYG 85 (273)
T ss_pred CCCCEEEECCCcC
Confidence 4689999876543
No 463
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=65.39 E-value=55 Score=28.22 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=56.6
Q ss_pred CCCCeEEEECCC--CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc--c-CcC--CCCCCccc
Q 022248 124 GKAKKVLEIGIG--TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV--G-EAI--PVSDASVD 196 (300)
Q Consensus 124 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d--~-~~~--~~~~~~~D 196 (300)
.++.+||-.|.+ .|.....++...+.+++.++.++...+.++. .+. ...+-..+ . ..+ ......+|
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~d 237 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGA---DYVIDYRKEDFVREVRELTGKRGVD 237 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC---CeEEecCChHHHHHHHHHhCCCCCc
Confidence 356788888765 4556666666677889999988876665532 221 11111111 0 000 01234689
Q ss_pred EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
+++....- ..+.++.+.|+++|.++....
T Consensus 238 ~~i~~~g~-------~~~~~~~~~l~~~G~~v~~~~ 266 (342)
T cd08266 238 VVVEHVGA-------ATWEKSLKSLARGGRLVTCGA 266 (342)
T ss_pred EEEECCcH-------HHHHHHHHHhhcCCEEEEEec
Confidence 99865431 245777888999999988753
No 464
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=65.36 E-value=37 Score=29.10 Aligned_cols=84 Identities=19% Similarity=0.110 Sum_probs=46.8
Q ss_pred eEEEECCCC--ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccccc
Q 022248 128 KVLEIGIGT--GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205 (300)
Q Consensus 128 ~vLDiGcG~--G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~ 205 (300)
+|.=||+|. |.++..+.+ .+.+|+++|.++..++.+.+. +. +.....+.+. -...|+|+..--..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~-~g~~V~~~d~~~~~~~~a~~~----g~----~~~~~~~~~~----~~~aDlVilavp~~ 68 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS-LGHTVYGVSRRESTCERAIER----GL----VDEASTDLSL----LKDCDLVILALPIG 68 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHC----CC----cccccCCHhH----hcCCCEEEEcCCHH
Confidence 455577663 234444443 467899999999877776542 21 1111111111 14578888653221
Q ss_pred CcccHHHHHHHHHHcccCCcEE
Q 022248 206 SVKDVDMTLQEVRRVLKPGGIY 227 (300)
Q Consensus 206 ~~~~~~~~l~~~~~~LkpgG~l 227 (300)
....+++++...++++..+
T Consensus 69 ---~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 69 ---LLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---HHHHHHHHHHHhCCCCcEE
Confidence 2245677887778776433
No 465
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=65.07 E-value=64 Score=27.29 Aligned_cols=93 Identities=20% Similarity=0.294 Sum_probs=53.8
Q ss_pred CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEE
Q 022248 124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~ 199 (300)
.++.+||=.|+ +.|..+..+++..+.+++.++.++ ..+.++ ..+.. .++....... ......+|+++
T Consensus 143 ~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~----~~g~~----~~~~~~~~~~~~~~~~~~~d~v~ 213 (309)
T cd05289 143 KAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLR----SLGAD----EVIDYTKGDFERAAAPGGVDAVL 213 (309)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHH----HcCCC----EEEeCCCCchhhccCCCCceEEE
Confidence 45678887775 355566666666778888887665 444442 22321 1111111111 12234688888
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
... ... .+....+.|+++|.++....
T Consensus 214 ~~~-----~~~--~~~~~~~~l~~~g~~v~~g~ 239 (309)
T cd05289 214 DTV-----GGE--TLARSLALVKPGGRLVSIAG 239 (309)
T ss_pred ECC-----chH--HHHHHHHHHhcCcEEEEEcC
Confidence 532 111 56778889999999987653
No 466
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=64.83 E-value=51 Score=28.01 Aligned_cols=94 Identities=20% Similarity=0.261 Sum_probs=58.1
Q ss_pred CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----C-C-CCCCcc
Q 022248 124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I-P-VSDASV 195 (300)
Q Consensus 124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~-~-~~~~~~ 195 (300)
.++.+||=.|+ +.|..+..+++..+..+++++.++...+.+++ .+.. .++...-.. + . .....+
T Consensus 135 ~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~~~~~~ 206 (320)
T cd05286 135 KPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA----AGAD----HVINYRDEDFVERVREITGGRGV 206 (320)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----CCCC----EEEeCCchhHHHHHHHHcCCCCe
Confidence 35678888884 46667777777778899999988877666533 2321 111111001 0 0 123468
Q ss_pred cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+|+.... . ..+....+.|+++|.++....
T Consensus 207 d~vl~~~~-----~--~~~~~~~~~l~~~g~~v~~g~ 236 (320)
T cd05286 207 DVVYDGVG-----K--DTFEGSLDSLRPRGTLVSFGN 236 (320)
T ss_pred eEEEECCC-----c--HhHHHHHHhhccCcEEEEEec
Confidence 99985322 1 245778889999999997753
No 467
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=64.50 E-value=69 Score=28.59 Aligned_cols=103 Identities=23% Similarity=0.251 Sum_probs=57.2
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcC-CCCCCcccEEE
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAI-PVSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~-~~~~~~~D~v~ 199 (300)
.++.+||=.|+| .|..+..+++..+. +++++|.++...+.+++. +. ..+.....+. +.+ ......+|+|+
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~----g~--~~v~~~~~~~~~~i~~~~~~~~d~v~ 248 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI----GA--IPIDFSDGDPVEQILGLEPGGVDRAV 248 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC--eEeccCcccHHHHHHHhhCCCCCEEE
Confidence 356677777775 34555566665665 788899988776666542 21 0010000010 000 11124689988
Q ss_pred EcccccCc-----ccHHHHHHHHHHcccCCcEEEEEec
Q 022248 200 GTLVLCSV-----KDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 200 ~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
-...-... .+....+.++.++|+++|.+.....
T Consensus 249 d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~ 286 (375)
T cd08282 249 DCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGV 286 (375)
T ss_pred ECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEec
Confidence 64322110 1223457888999999999976654
No 468
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=64.37 E-value=5.3 Score=34.67 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHcccCCcEEEEEecccCCCchHH
Q 022248 209 DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFL 241 (300)
Q Consensus 209 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 241 (300)
.....|..+..+|+|||+++++.++..++....
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK 246 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSLEDRIVK 246 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHH
Confidence 346788999999999999999998876654433
No 469
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=64.29 E-value=59 Score=29.17 Aligned_cols=97 Identities=12% Similarity=0.165 Sum_probs=54.7
Q ss_pred CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEec---cc----CcCCCCCC
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQA---VG----EAIPVSDA 193 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~---d~----~~~~~~~~ 193 (300)
.++.+||=.|+| .|..+..+++..+. .+++++.++...+.+++ .+.. .+ ..... +. ..+ ....
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~--~~v~~~~~~~~~~~~~v~~~-~~g~ 274 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGAD--YVFNPTKMRDCLSGEKVMEV-TKGW 274 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC--EEEcccccccccHHHHHHHh-cCCC
Confidence 356677766663 23344445555666 79999988875544443 2321 11 11100 10 011 1234
Q ss_pred cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.+|+|+.... +....+.++.+.|+++|+++....
T Consensus 275 gvDvvld~~g-----~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 275 GADIQVEAAG-----APPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred CCCEEEECCC-----CcHHHHHHHHHHHHcCCEEEEECC
Confidence 6999886422 223456788899999999998753
No 470
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=64.13 E-value=47 Score=23.85 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=45.9
Q ss_pred eEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC--CCCcccEEEEccccc
Q 022248 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--SDASVDAVVGTLVLC 205 (300)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~v~~~~~l~ 205 (300)
+|| +-||.|..+..++ +..++.+++.|+ .+++...+..+++. ....+|+|++.
T Consensus 3 kIL-lvCg~G~STSlla-----------------~k~k~~~~e~gi---~~~i~a~~~~e~~~~~~~~~~DvIll~---- 57 (104)
T PRK09590 3 KAL-IICAAGMSSSMMA-----------------KKTTEYLKEQGK---DIEVDAITATEGEKAIAAAEYDLYLVS---- 57 (104)
T ss_pred EEE-EECCCchHHHHHH-----------------HHHHHHHHHCCC---ceEEEEecHHHHHHhhccCCCCEEEEC----
Confidence 455 6699997555433 334555666665 35666666554432 23469999975
Q ss_pred CcccHHHHHHHHHHcccCCcE-EEEEe
Q 022248 206 SVKDVDMTLQEVRRVLKPGGI-YLFVE 231 (300)
Q Consensus 206 ~~~~~~~~l~~~~~~LkpgG~-l~~~~ 231 (300)
++..-.+.++...+.+.|. +.+.+
T Consensus 58 --PQi~~~~~~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 58 --PQTKMYFKQFEEAGAKVGKPVVQIP 82 (104)
T ss_pred --hHHHHHHHHHHHHhhhcCCCEEEeC
Confidence 3444456778877766544 44444
No 471
>PRK06196 oxidoreductase; Provisional
Probab=63.75 E-value=90 Score=27.06 Aligned_cols=72 Identities=8% Similarity=-0.023 Sum_probs=45.6
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 191 (300)
.+++||=.|++ |.++.++++ ..+.+|++++-++...+.+.+.+. .+.++.+|+.+.. -.
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-------~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-------GVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-------hCeEEEccCCCHHHHHHHHHHHHhc
Confidence 45678878865 445555554 356789999988776555443331 3667788876542 01
Q ss_pred CCcccEEEEcccc
Q 022248 192 DASVDAVVGTLVL 204 (300)
Q Consensus 192 ~~~~D~v~~~~~l 204 (300)
.+..|+++.+...
T Consensus 97 ~~~iD~li~nAg~ 109 (315)
T PRK06196 97 GRRIDILINNAGV 109 (315)
T ss_pred CCCCCEEEECCCC
Confidence 2578999976543
No 472
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=63.58 E-value=95 Score=26.55 Aligned_cols=81 Identities=11% Similarity=-0.034 Sum_probs=57.3
Q ss_pred CCCeEEEECCCCCh---hHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 191 (300)
.++++|--|.+.|. .+..++ ..+++++..+.+++.++...+.+...+....++..+.+|....+ ..
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la-~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~ 85 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLA-KAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK 85 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence 56778888876663 233333 47889999999999998888877766654457888888885432 12
Q ss_pred -CCcccEEEEcccccC
Q 022248 192 -DASVDAVVGTLVLCS 206 (300)
Q Consensus 192 -~~~~D~v~~~~~l~~ 206 (300)
.+..|+++.+.....
T Consensus 86 ~~GkidiLvnnag~~~ 101 (270)
T KOG0725|consen 86 FFGKIDILVNNAGALG 101 (270)
T ss_pred hCCCCCEEEEcCCcCC
Confidence 478999998665444
No 473
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=63.32 E-value=17 Score=31.31 Aligned_cols=74 Identities=12% Similarity=0.025 Sum_probs=57.6
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEE
Q 022248 152 LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIY 227 (300)
Q Consensus 152 ~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l 227 (300)
.-+.+.+..-+.+++++ .+|.++.+|+.++- -+.+.+|.++...+-.+++|. ..++.++.+-+.+|..+
T Consensus 290 lP~yl~~~~YEsir~n~-------~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~V 362 (414)
T COG5379 290 LPAYLDEGVYESIRQNL-------RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARV 362 (414)
T ss_pred CChhhchhhHHHHHhhh-------hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEE
Confidence 33555666777777765 37888888886652 356899999999999998764 67899999999999999
Q ss_pred EEEec
Q 022248 228 LFVEH 232 (300)
Q Consensus 228 ~~~~~ 232 (300)
++-+.
T Consensus 363 ifRta 367 (414)
T COG5379 363 IFRTA 367 (414)
T ss_pred EEecc
Confidence 99553
No 474
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=63.17 E-value=42 Score=23.43 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=50.1
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEE
Q 022248 151 VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYL 228 (300)
Q Consensus 151 ~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 228 (300)
+..+|-++...+..++.++..++. .+. ...+.... -.....+|+|++...+.. .+...+++.+++.- |+..++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~--~v~-~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~-~~~~ii 75 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYE--EVT-TASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQIN-PSIPII 75 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEE--EEE-EESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHT-TTSEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEE-EECCHHHHHHHhcccCceEEEEEeeecc-cccccccccccccc-ccccEE
Confidence 456788888888888888765531 222 22232221 123456999999877666 46667788886655 888888
Q ss_pred EEec
Q 022248 229 FVEH 232 (300)
Q Consensus 229 ~~~~ 232 (300)
++..
T Consensus 76 ~~t~ 79 (112)
T PF00072_consen 76 VVTD 79 (112)
T ss_dssp EEES
T ss_pred EecC
Confidence 8773
No 475
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=62.91 E-value=49 Score=29.76 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHH
Q 022248 124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (300)
Q Consensus 124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~ 166 (300)
.++.+||=.|+ +.|..+..+++..+.++++++.++...+.+++
T Consensus 192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 35678888886 45566667777778888899988887777754
No 476
>PRK05872 short chain dehydrogenase; Provisional
Probab=62.75 E-value=73 Score=27.35 Aligned_cols=75 Identities=15% Similarity=0.021 Sum_probs=45.6
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 191 (300)
+++++|=.|++.| ++..+++ ..+.+++.++.++..++...+.+.. + ..+..+.+|+.+.. -.
T Consensus 8 ~gk~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 8 AGKVVVVTGAARG-IGAELARRLHARGAKLALVDLEEAELAALAAELGG-D---DRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 5678888876554 4444443 3577999999988776665544321 1 24555557765421 01
Q ss_pred CCcccEEEEcccc
Q 022248 192 DASVDAVVGTLVL 204 (300)
Q Consensus 192 ~~~~D~v~~~~~l 204 (300)
-+.+|+|+.+...
T Consensus 83 ~g~id~vI~nAG~ 95 (296)
T PRK05872 83 FGGIDVVVANAGI 95 (296)
T ss_pred cCCCCEEEECCCc
Confidence 1578999987654
No 477
>PRK07985 oxidoreductase; Provisional
Probab=62.37 E-value=1e+02 Score=26.48 Aligned_cols=103 Identities=14% Similarity=-0.000 Sum_probs=57.9
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCC--HHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPN--RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---------- 189 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s--~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---------- 189 (300)
+++++|-.|++.| ++..+++ ..+.+++.++.+ ....+...+.....+ .++.++.+|+.+..
T Consensus 48 ~~k~vlITGas~g-IG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~ 123 (294)
T PRK07985 48 KDRKALVTGGDSG-IGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG---RKAVLLPGDLSDEKFARSLVHEAH 123 (294)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC---CeEEEEEccCCCHHHHHHHHHHHH
Confidence 5578998886544 4444443 356788877653 333444444444333 35777888875531
Q ss_pred CCCCcccEEEEcccccC----c-----ccH-----------HHHHHHHHHcccCCcEEEEEe
Q 022248 190 VSDASVDAVVGTLVLCS----V-----KDV-----------DMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 190 ~~~~~~D~v~~~~~l~~----~-----~~~-----------~~~l~~~~~~LkpgG~l~~~~ 231 (300)
-.-+..|+++.+..... + .+. -.+++.+.+.++.+|.++++.
T Consensus 124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 01246798887654321 1 111 134566666677788888754
No 478
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=62.36 E-value=37 Score=29.54 Aligned_cols=89 Identities=21% Similarity=0.239 Sum_probs=48.3
Q ss_pred CeEEEECCCC-C-hhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 127 KKVLEIGIGT-G-PNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 127 ~~vLDiGcG~-G-~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
.+|.=||+|. | .++..+.+.. ..+++++|.++...+.+++ .+.. .. ...+.... -...|+|+..--
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~---~~-~~~~~~~~---~~~aDvViiavp 75 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG---DR-VTTSAAEA---VKGADLVILCVP 75 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC---ce-ecCCHHHH---hcCCCEEEECCC
Confidence 5688888775 2 2333343322 2489999999887666543 2221 11 11121111 135788886542
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEE
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLF 229 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~ 229 (300)
.. ....++.++...+++|..++.
T Consensus 76 ~~---~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 76 VG---ASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HH---HHHHHHHHHHhhCCCCCEEEe
Confidence 22 224456777777888875544
No 479
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.97 E-value=35 Score=30.10 Aligned_cols=94 Identities=20% Similarity=0.181 Sum_probs=54.3
Q ss_pred CeEEEECCCCC--hhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHH-------cCCC----CCCEEEEecccCcCCCCCC
Q 022248 127 KKVLEIGIGTG--PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA-------AGLP----LTNFKFLQAVGEAIPVSDA 193 (300)
Q Consensus 127 ~~vLDiGcG~G--~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~-------~~~~----~~~~~~~~~d~~~~~~~~~ 193 (300)
.+|-=||+|+= .++..++ ..+.+|+..|.+++.++.++..++. .++. ..++.+.. +.++ .-.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~---av~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA---CVA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH---Hhc
Confidence 56888888732 2222333 4688999999999888776654431 2211 01222221 2111 114
Q ss_pred cccEEEEcccccCcccHHHHHHHHHHcccCCcE
Q 022248 194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGI 226 (300)
Q Consensus 194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 226 (300)
..|+|+-. +.+...-...+++++-+.++|+.+
T Consensus 83 ~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aI 114 (321)
T PRK07066 83 DADFIQES-APEREALKLELHERISRAAKPDAI 114 (321)
T ss_pred CCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeE
Confidence 56877753 344443445788999999999873
No 480
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=61.86 E-value=60 Score=28.06 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=57.7
Q ss_pred CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcC-CCCCCcccEEE
Q 022248 124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAI-PVSDASVDAVV 199 (300)
Q Consensus 124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~-~~~~~~~D~v~ 199 (300)
.++.+||=.|. +.|..+..+++..+.++++++.++...+.+++.+ +.. .-+.....+. ..+ ....+.+|+++
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~~-~~~~~~~~~~~~~v~~~~~~~~d~vi 219 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GFD-AAINYKTPDLAEALKEAAPDGIDVYF 219 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CCc-eEEecCChhHHHHHHHhccCCceEEE
Confidence 35678887773 4566667777777889999998887766665422 211 0011111011 000 01124689888
Q ss_pred EcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.... ...+....+.|+++|.++....
T Consensus 220 ~~~g-------~~~~~~~~~~l~~~G~~v~~g~ 245 (329)
T cd05288 220 DNVG-------GEILDAALTLLNKGGRIALCGA 245 (329)
T ss_pred Ecch-------HHHHHHHHHhcCCCceEEEEee
Confidence 5321 1257888899999999887653
No 481
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=61.63 E-value=84 Score=27.93 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=56.5
Q ss_pred CCCCeEEEECCC-CChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC----c--CCCCCCcc
Q 022248 124 GKAKKVLEIGIG-TGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE----A--IPVSDASV 195 (300)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~----~--~~~~~~~~ 195 (300)
.++.+|.-+||| -|..+.+-+. .....++++|+++.-++.|++. .-..++...-. + ...-++..
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f--------GAT~~vn~~~~~~vv~~i~~~T~gG~ 255 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF--------GATHFVNPKEVDDVVEAIVELTDGGA 255 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc--------CCceeecchhhhhHHHHHHHhcCCCC
Confidence 466778888885 3444444343 3456899999999999988874 22333332111 0 01223356
Q ss_pred cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
|.++- ..-+. ..++.....+.++|..+++....
T Consensus 256 d~~~e-----~~G~~-~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 256 DYAFE-----CVGNV-EVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred CEEEE-----ccCCH-HHHHHHHHHHhcCCeEEEEecCC
Confidence 66642 11222 25566667777799999976544
No 482
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=61.48 E-value=46 Score=29.01 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=51.1
Q ss_pred CCCeEEEECCCC-C-hhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC----CCCEEEEecccCcCCCCCCcccEE
Q 022248 125 KAKKVLEIGIGT-G-PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP----LTNFKFLQAVGEAIPVSDASVDAV 198 (300)
Q Consensus 125 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~D~v 198 (300)
...+|+=||+|. | .++..|++ .+.+|+.+.-++. +. ....++. ..+..+....+...+-..+.+|+|
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~-~g~~V~~~~r~~~--~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLAR-AGFDVHFLLRSDY--EA----VRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHH-CCCeEEEEEeCCH--HH----HHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 346789898873 3 34444443 4567777776542 21 2222221 011111100011111123578998
Q ss_pred EEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248 199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
+..-=-+ +....++.+...+++++.++...+..
T Consensus 77 ilavK~~---~~~~~~~~l~~~~~~~~~iv~lqNG~ 109 (313)
T PRK06249 77 LVGLKTT---ANALLAPLIPQVAAPDAKVLLLQNGL 109 (313)
T ss_pred EEEecCC---ChHhHHHHHhhhcCCCCEEEEecCCC
Confidence 8642111 33456778888899999877765443
No 483
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=60.98 E-value=1.2e+02 Score=26.95 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=60.4
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 204 (300)
.+++||=+|--...+...|. .....+...+..... ... ...+ .++.|- .++... ..+.||+|+...--
T Consensus 19 ~~~~~l~~~~~~d~~~~~l~-~~~~~~~~~~~~~~~--~~~---~~~~---~~~~f~-~~~~~~--~~~~~d~~~~~~pk 86 (342)
T PRK09489 19 EQRRVLFAGDLQDDLPAQLD-AASVRVHTQQFHHWQ--VLS---RQMG---DNARFS-LVATAE--DVADCDTLIYYWPK 86 (342)
T ss_pred CCCcEEEEcCcchhhHHhhh-ccceEEehhhhHHHH--HHH---hhcC---CceEec-cccCCc--cCCCCCEEEEECCC
Confidence 56789999988877777665 222234433333321 111 1111 133332 222111 12579999874322
Q ss_pred cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh
Q 022248 205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV 247 (300)
Q Consensus 205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 247 (300)
. -...+..|..+.+.|+|||.++++......-......+..+
T Consensus 87 ~-k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~ 128 (342)
T PRK09489 87 N-KQEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADY 128 (342)
T ss_pred C-HHHHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHh
Confidence 1 12335578999999999999999986654433444444433
No 484
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.83 E-value=97 Score=25.77 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=56.9
Q ss_pred CCCeEEEECCCC-ChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--------C--
Q 022248 125 KAKKVLEIGIGT-GPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------V-- 190 (300)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~-- 190 (300)
.++++|-.|.++ +..+..+++ ..+.+|+.++.+....+.+++. . + .++.++..|+.+.. .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~-~--~---~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL-V--D---EEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh-c--c---CceeEEeCCCCCHHHHHHHHHHHHH
Confidence 467888888763 334444443 3577888887764332222221 1 1 25677888875431 0
Q ss_pred CCCcccEEEEcccccC-------cc-----cH-----------HHHHHHHHHcccCCcEEEEEec
Q 022248 191 SDASVDAVVGTLVLCS-------VK-----DV-----------DMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 191 ~~~~~D~v~~~~~l~~-------~~-----~~-----------~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
.-+.+|+++.+..... +. +. ..+.+.+...++.+|.++.+..
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss 144 (252)
T PRK06079 80 RVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTY 144 (252)
T ss_pred HhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEec
Confidence 1257899997654321 11 11 1234556666777888777653
No 485
>PRK05855 short chain dehydrogenase; Validated
Probab=60.79 E-value=85 Score=29.66 Aligned_cols=77 Identities=16% Similarity=0.052 Sum_probs=50.6
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 191 (300)
.+.++|=+|+ +|.++..+++ ..+.+|+.++.+...++.+.+.++..+ .++.++.+|+.+.. -.
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG---AVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4567887776 4445555544 356789999998877777666665544 26788888886532 01
Q ss_pred CCcccEEEEccccc
Q 022248 192 DASVDAVVGTLVLC 205 (300)
Q Consensus 192 ~~~~D~v~~~~~l~ 205 (300)
.+.+|+++.+....
T Consensus 390 ~g~id~lv~~Ag~~ 403 (582)
T PRK05855 390 HGVPDIVVNNAGIG 403 (582)
T ss_pred cCCCcEEEECCccC
Confidence 24689999876543
No 486
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=60.73 E-value=3.3 Score=36.09 Aligned_cols=37 Identities=22% Similarity=0.496 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHH
Q 022248 208 KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW 244 (300)
Q Consensus 208 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 244 (300)
......|..+..+|+|||+++++.++..++.....++
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f 254 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFF 254 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHH
Confidence 3456789999999999999999998876654443333
No 487
>PRK07454 short chain dehydrogenase; Provisional
Probab=60.51 E-value=61 Score=26.58 Aligned_cols=76 Identities=9% Similarity=-0.023 Sum_probs=48.5
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CC-----
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----- 191 (300)
..+++|=.|+ +|.++..+++ ..+.+|++++-++...+...+.++..+ .++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG---VKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3457788875 5555555554 356799999998876666555554432 36788888886532 11
Q ss_pred CCcccEEEEcccc
Q 022248 192 DASVDAVVGTLVL 204 (300)
Q Consensus 192 ~~~~D~v~~~~~l 204 (300)
-+..|+++.+...
T Consensus 81 ~~~id~lv~~ag~ 93 (241)
T PRK07454 81 FGCPDVLINNAGM 93 (241)
T ss_pred cCCCCEEEECCCc
Confidence 1458999876544
No 488
>PRK06940 short chain dehydrogenase; Provisional
Probab=60.30 E-value=1.1e+02 Score=26.01 Aligned_cols=99 Identities=21% Similarity=0.196 Sum_probs=57.2
Q ss_pred eEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C----CCCccc
Q 022248 128 KVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----SDASVD 196 (300)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~----~~~~~D 196 (300)
.+|=-|+ |.++..+++ ..+.+|+.+|.++..++.+.+.++..+ .++.++..|+.+.. + ..+.+|
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 4554554 346666554 246789999988776666555554433 25777888875531 1 125689
Q ss_pred EEEEcccccCc-ccH-----------HHHHHHHHHcccCCcEEEEEe
Q 022248 197 AVVGTLVLCSV-KDV-----------DMTLQEVRRVLKPGGIYLFVE 231 (300)
Q Consensus 197 ~v~~~~~l~~~-~~~-----------~~~l~~~~~~LkpgG~l~~~~ 231 (300)
+++.+...... .+. ..+++.+...++++|.++++.
T Consensus 79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~is 125 (275)
T PRK06940 79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIA 125 (275)
T ss_pred EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 99976654322 122 123556666666666655543
No 489
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=60.19 E-value=70 Score=27.80 Aligned_cols=97 Identities=24% Similarity=0.159 Sum_probs=48.0
Q ss_pred EECCCC-ChhHHH-hHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE-ecccCcCCCCCCcccEEEEcccccC
Q 022248 131 EIGIGT-GPNLKY-YAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL-QAVGEAIPVSDASVDAVVGTLVLCS 206 (300)
Q Consensus 131 DiGcG~-G~~~~~-l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~D~v~~~~~l~~ 206 (300)
=||+|. |....+ ++.. ...+++.+|++++.++-...-+...........+. ..|.+.+ ...|+|+.......
T Consensus 3 iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l----~~aDiVIitag~p~ 78 (300)
T cd00300 3 IIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADA----ADADIVVITAGAPR 78 (300)
T ss_pred EECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHh----CCCCEEEEcCCCCC
Confidence 367764 433322 2222 23589999998876554444343322111123333 2333322 45788887554332
Q ss_pred cc--cH-------HHHHHHHHHcc---cCCcEEEEEe
Q 022248 207 VK--DV-------DMTLQEVRRVL---KPGGIYLFVE 231 (300)
Q Consensus 207 ~~--~~-------~~~l~~~~~~L---kpgG~l~~~~ 231 (300)
-+ +. ..+++++.+.+ .|+|++++..
T Consensus 79 ~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 79 KPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 21 11 12344444433 4899988876
No 490
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=59.90 E-value=92 Score=26.73 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=51.9
Q ss_pred eEEEECCCCC--hhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCC--CCEEEEecccCcCCCCCCcccEEEEccc
Q 022248 128 KVLEIGIGTG--PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL--TNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (300)
Q Consensus 128 ~vLDiGcG~G--~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 203 (300)
+|+=+|+|.- .++..|+ ..+.+|+.++.++..++..++ .++.. ...........+.. ..+.+|+|+..--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAHLDALNE----NGLRLEDGEITVPVLAADDPA-ELGPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHHHHHHHH----cCCcccCCceeecccCCCChh-HcCCCCEEEEecc
Confidence 5777888642 2333333 346789999987665554443 23210 01110000011111 1257899887432
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 233 (300)
- .+...+++.+...+.++..+++....
T Consensus 76 ~---~~~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 76 A---YQLPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred c---ccHHHHHHHHhhhcCCCCEEEEecCC
Confidence 2 24566788888888888777766543
No 491
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.89 E-value=1.3e+02 Score=27.33 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=62.9
Q ss_pred CCeEEEECC-CCCh------hHHHhHhC-CCceEEEEc-CCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-------
Q 022248 126 AKKVLEIGI-GTGP------NLKYYAAD-TDVQVLGVD-PNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------- 189 (300)
Q Consensus 126 ~~~vLDiGc-G~G~------~~~~l~~~-~~~~~~giD-~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------- 189 (300)
+..|+=+|- |.|. ++.++.+. ...-+++-| .-..+..+.++++...++ -|+..-.+.-|
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~i-----P~ygsyte~dpv~ia~eg 175 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARV-----PFYGSYTEADPVKIASEG 175 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCC-----eeEecccccchHHHHHHH
Confidence 445666764 5552 33333222 222345555 466777888887776654 33332112222
Q ss_pred ---CCCCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEeccc
Q 022248 190 ---VSDASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVA 234 (300)
Q Consensus 190 ---~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 234 (300)
|..+.||+||+..+=.|-.+ .-+-+.++.+.++|+-++++++...
T Consensus 176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 66789999999776665433 2345677888899999999988544
No 492
>PRK05854 short chain dehydrogenase; Provisional
Probab=59.54 E-value=69 Score=27.82 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=49.2
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 191 (300)
.++++|=.|++.| ++.++++ ..+.+|+.++-+....+.+.+.+....- ..++.++..|+.+.. -.
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP-DAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 4667887777655 4444443 3567999998888776666655543321 136788888886532 12
Q ss_pred CCcccEEEEcccc
Q 022248 192 DASVDAVVGTLVL 204 (300)
Q Consensus 192 ~~~~D~v~~~~~l 204 (300)
.+..|+++.+...
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 2568999976543
No 493
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=59.29 E-value=66 Score=27.48 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=55.5
Q ss_pred CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC------CCCCcc
Q 022248 124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASV 195 (300)
Q Consensus 124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~ 195 (300)
.++.+||=.|+ +.|..+..+++..+.+++.++.++...+.+++ .+.. .++..+..... .....+
T Consensus 143 ~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~~~~~~ 214 (328)
T cd08268 143 RPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLA----LGAA----HVIVTDEEDLVAEVLRITGGKGV 214 (328)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----cCCC----EEEecCCccHHHHHHHHhCCCCc
Confidence 35678887776 34455555566677899999988876665532 2221 11211111110 122468
Q ss_pred cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
|+++....- ....++.+.++++|.++....
T Consensus 215 d~vi~~~~~-------~~~~~~~~~l~~~g~~v~~g~ 244 (328)
T cd08268 215 DVVFDPVGG-------PQFAKLADALAPGGTLVVYGA 244 (328)
T ss_pred eEEEECCch-------HhHHHHHHhhccCCEEEEEEe
Confidence 998864321 235677888999999997653
No 494
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.24 E-value=49 Score=28.55 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=55.2
Q ss_pred CeEEEECCCCC--hhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHH-------cCCC--------CCCEEEEecccCcCC
Q 022248 127 KKVLEIGIGTG--PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA-------AGLP--------LTNFKFLQAVGEAIP 189 (300)
Q Consensus 127 ~~vLDiGcG~G--~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~-------~~~~--------~~~~~~~~~d~~~~~ 189 (300)
.+|-=||+|+= .++..++ ..+.+|+.+|.+++.++.+.+++.. .+.- ..+++ ...|.+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh-
Confidence 36778888742 2222333 4688999999999999887766432 1110 01222 12232222
Q ss_pred CCCCcccEEEEcccccCcccHHHHHHHHHHcc-cCCcEEEE
Q 022248 190 VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVL-KPGGIYLF 229 (300)
Q Consensus 190 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~ 229 (300)
...|+|+-. +.+...-...++.++-..+ +|+..+.-
T Consensus 83 ---~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 83 ---ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred ---CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 457888853 3344334456788888888 66755544
No 495
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=59.14 E-value=1e+02 Score=28.49 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=58.5
Q ss_pred CCCCeEEEECC-CC-ChhHHH-hHhC--------CCceEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEecccCcCCCC
Q 022248 124 GKAKKVLEIGI-GT-GPNLKY-YAAD--------TDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVS 191 (300)
Q Consensus 124 ~~~~~vLDiGc-G~-G~~~~~-l~~~--------~~~~~~giD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~~~~ 191 (300)
++..+|.=+|+ |. |....+ |+.. ...+++.+|.+++.++--..-+...-.. ..++.+..+|.+++
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~--- 174 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVF--- 174 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHh---
Confidence 45688999998 75 433333 2221 1137999999887765544444332101 12444444554444
Q ss_pred CCcccEEEEcccccCccc--H-----------HHHHHHHHHcccCCcEEEEEec
Q 022248 192 DASVDAVVGTLVLCSVKD--V-----------DMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 192 ~~~~D~v~~~~~l~~~~~--~-----------~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
...|+|+.....-.-+. . ..+.+.+.+..+|+|+++++.+
T Consensus 175 -kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 175 -QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred -CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 45788888765533221 1 2233444444578999999773
No 496
>PRK08703 short chain dehydrogenase; Provisional
Probab=59.04 E-value=62 Score=26.54 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=44.6
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------C-
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V- 190 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~- 190 (300)
++++||=.|++. .++..+++ ..+.++++++-++...+.....+...+- ..+.++..|+.+.. +
T Consensus 5 ~~k~vlItG~sg-giG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 5 SDKTILVTGASQ-GLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH--PEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC--CCcceEEeeecccchHHHHHHHHHHH
Confidence 456888888644 45555543 3567899999988766665555443321 23445555543210 0
Q ss_pred --CCCcccEEEEccc
Q 022248 191 --SDASVDAVVGTLV 203 (300)
Q Consensus 191 --~~~~~D~v~~~~~ 203 (300)
..+.+|.|+.+..
T Consensus 82 ~~~~~~id~vi~~ag 96 (239)
T PRK08703 82 EATQGKLDGIVHCAG 96 (239)
T ss_pred HHhCCCCCEEEEecc
Confidence 0146899886554
No 497
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=58.99 E-value=65 Score=26.81 Aligned_cols=76 Identities=16% Similarity=0.028 Sum_probs=50.1
Q ss_pred CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-C---------C
Q 022248 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V---------S 191 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~---------~ 191 (300)
+++++|=.|+ +|..+..+++ ..+.+++.++-+...++...+.+...+ .++.++.+|+.+.. + .
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG---IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5678888884 4555666554 356789999998877776666554433 36778888886532 0 1
Q ss_pred CCcccEEEEcccc
Q 022248 192 DASVDAVVGTLVL 204 (300)
Q Consensus 192 ~~~~D~v~~~~~l 204 (300)
.+.+|.|+.....
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 1468999876543
No 498
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.87 E-value=49 Score=28.46 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=51.2
Q ss_pred eEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHc---C-----CC-------CCCEEEEecccCcCC
Q 022248 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAA---G-----LP-------LTNFKFLQAVGEAIP 189 (300)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~---~-----~~-------~~~~~~~~~d~~~~~ 189 (300)
+|.=||+|. ++..++. ..+.+|+.+|.+++.++.+.+..... + +. ..++.+ ..+..+.
T Consensus 3 ~V~VIG~G~--mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~- 78 (288)
T PRK09260 3 KLVVVGAGV--MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA- 78 (288)
T ss_pred EEEEECccH--HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh-
Confidence 566677753 3333332 35678999999999998887643211 1 00 001221 1222111
Q ss_pred CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEE
Q 022248 190 VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF 229 (300)
Q Consensus 190 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 229 (300)
-...|+|+..- .....-...++.++.+.++|+..+..
T Consensus 79 --~~~aD~Vi~av-pe~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 79 --VADADLVIEAV-PEKLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred --hcCCCEEEEec-cCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 13568888532 22222234567788888888765544
No 499
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.80 E-value=25 Score=31.58 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=52.2
Q ss_pred CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC
Q 022248 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (300)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~ 188 (300)
.++..|+|..|-.|.-+.+++. ....++.+.|.+..-.+..++.++..|.+ .++...+|+...
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~--~~~~~~~df~~t 276 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS--IVESVEGDFLNT 276 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC--ccccccccccCC
Confidence 4678999999999988888775 34568999999999999999999888875 666678888764
No 500
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=58.62 E-value=25 Score=26.25 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=42.6
Q ss_pred CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC-CCcccEEEEccc
Q 022248 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV 203 (300)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~ 203 (300)
...+|+|||-|.=.-....+...+..++++|+.+. .+. ..+.++..|+.+.... =...|+|.+..-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~------~g~~~v~DDif~P~l~iY~~a~lIYSiRP 79 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP------EGVNFVVDDIFNPNLEIYEGADLIYSIRP 79 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-----------------STTEE---SSS--HHHHTTEEEEEEES-
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc------cCcceeeecccCCCHHHhcCCcEEEEeCC
Confidence 44599999998765444444445689999999987 111 1456777887653311 135788887542
Q ss_pred ccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232 (300)
Q Consensus 204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 232 (300)
. ++....+.++.+. -|.-+++...
T Consensus 80 P---~El~~~il~lA~~--v~adlii~pL 103 (127)
T PF03686_consen 80 P---PELQPPILELAKK--VGADLIIRPL 103 (127)
T ss_dssp ----TTSHHHHHHHHHH--HT-EEEEE-B
T ss_pred C---hHHhHHHHHHHHH--hCCCEEEECC
Confidence 2 3333444444443 2455666543
Done!