BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022249
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 131 NRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAP 190
+YKG +D ++ +++GF WRG A++ PT + D ++ + +
Sbjct: 48 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ 107
Query: 191 MLTPYVP-LVAGSVARSLACISCYPIELARTRMQA 224
+ L +G A + + YP++ ARTR+ A
Sbjct: 108 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA 142
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 132 RYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRN--LMENFTTGNA 189
RY+ T++ + + R+EG LW+GT ++A + L YD ++ L N T +
Sbjct: 143 RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDL 202
Query: 190 P 190
P
Sbjct: 203 P 203
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 174 YDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIEL 217
+D + + T N P LTPY+ + SV L CI+ IEL
Sbjct: 779 FDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIEL 822
>pdb|3Q08|A Chain A, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|B Chain B, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|C Chain C, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|D Chain D, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|E Chain E, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|F Chain F, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|G Chain G, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|H Chain H, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|I Chain I, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|J Chain J, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|K Chain K, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|L Chain L, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|M Chain M, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|N Chain N, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|O Chain O, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|P Chain P, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|Q Chain Q, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|R Chain R, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|S Chain S, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|T Chain T, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q09|A Chain A, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|B Chain B, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|C Chain C, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|D Chain D, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|E Chain E, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|F Chain F, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|G Chain G, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|H Chain H, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|I Chain I, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|J Chain J, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|K Chain K, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|L Chain L, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|M Chain M, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|N Chain N, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|O Chain O, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|P Chain P, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|Q Chain Q, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|R Chain R, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|S Chain S, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|T Chain T, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
Length = 248
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 210 ISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPL 248
I+ Y + A+T M+ F T G K V++TLVGV PL
Sbjct: 79 INAYDLAKAQTFMREFRSTTVG-KNADVFETLVGVTKPL 116
>pdb|2VXH|A Chain A, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|B Chain B, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|C Chain C, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|D Chain D, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|E Chain E, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|F Chain F, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
Length = 251
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 210 ISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPL 248
I+ Y + A+T M+ F T G K V++TLVGV PL
Sbjct: 82 INAYDLAKAQTFMREFRSTTIG-KNADVFETLVGVTKPL 119
>pdb|2XN0|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN0|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN1|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|C Chain C, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|D Chain D, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
Length = 732
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 101 SFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARL 152
S+ESN+ + P VPG +P P N+Y L+L K VR F ++
Sbjct: 422 SYESNLY----KEHPDYLMHVPGRKPCPSRNQY--VLELGRKEVRDNIFEQM 467
>pdb|2XN2|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Galactose
Length = 732
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 101 SFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARL 152
S+ESN+ + P VPG +P P N+Y L+L K VR F ++
Sbjct: 422 SYESNLY----KEHPDYLXHVPGRKPCPSRNQY--VLELGRKEVRDNIFEQM 467
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,568,128
Number of Sequences: 62578
Number of extensions: 273596
Number of successful extensions: 409
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 11
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)