Query 022249
Match_columns 300
No_of_seqs 155 out of 1600
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:22:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 4E-39 1.4E-43 294.4 14.0 211 27-296 80-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.7E-38 6E-43 289.2 11.2 213 28-292 84-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.1E-37 3.7E-42 283.9 16.4 198 53-294 4-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.6E-36 5.6E-41 277.1 15.9 192 59-295 4-195 (303)
5 3tgu_G UQCRQ, mitochondrial ub 43.9 42 0.0014 23.6 4.9 37 259-295 33-69 (81)
6 1pp9_G Ubiquinol-cytochrome C 31.5 76 0.0026 22.2 4.6 37 259-295 33-69 (81)
7 3f2e_A SIRV coat protein; four 15.5 73 0.0025 22.1 1.8 33 233-275 7-43 (100)
8 1tlq_A Hypothetical protein YP 12.0 45 0.0015 27.2 -0.1 52 24-75 110-161 (189)
9 3cx5_H Cytochrome B-C1 complex 11.8 1.2E+02 0.0039 21.9 2.0 36 259-294 43-78 (93)
10 2acm_A Mucin-1; auto-catalytic 10.2 66 0.0023 21.1 0.2 20 134-153 40-59 (66)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4e-39 Score=294.44 Aligned_cols=211 Identities=19% Similarity=0.243 Sum_probs=182.5
Q ss_pred cccccccccCCcccccccccccCCCCCCCHHHHHHHHhHHHHHHHhhcchHHHHHHHHHhhcCCCCCCCCcccccccchh
Q 022249 27 VSSVTVSSETSSKEEALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNM 106 (300)
Q Consensus 27 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~ag~~s~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~ 106 (300)
..++.++.||..++....... ..+....+++|++||+++.++++|+|+||+|||++...
T Consensus 80 ~~~i~f~~ye~~k~~~~~~~~-----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---------------- 138 (303)
T 2lck_A 80 FASVRIGLYDSVKQFYTKGSE-----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---------------- 138 (303)
T ss_dssp HHHHTTTHHHHHHHHHSCCCS-----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC----------------
T ss_pred HHHHHHHHHHHHHHHHhcCCc-----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc----------------
Confidence 346777888887755433211 36788999999999999999999999999999998621
Q ss_pred hhhcccCCCCCCCCCCCCCCCCcccCCCcHHHHHHHHHhhhccchhccchhhhhhhhhccceeEhhhHHHHHHHHhcccC
Q 022249 107 MLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTT 186 (300)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~y~~~k~~l~~~~~ 186 (300)
.....|+++.+++++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+...
T Consensus 139 ---------------------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~ 197 (303)
T 2lck_A 139 ---------------------GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL 197 (303)
T ss_dssp ---------------------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS
T ss_pred ---------------------CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 11236889999999999999999999999999999999999999999999998865432
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccCCCCCCCCCHHHHHHHHhhcccccCcccccccHHHHhhh
Q 022249 187 GNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTG 266 (300)
Q Consensus 187 ~~~~~~~~~~~~~ag~~ag~~~~~v~~P~dvvktr~q~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~Gi~glyrG 266 (300)
. ..+....+++|++||++++++++|+||||+|||.+.. ..|+++++|+++|+++| |++|||||
T Consensus 198 ~---~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----~~y~~~~~~~~~i~~~e----------G~~glyrG 260 (303)
T 2lck_A 198 M---TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----GQYHSAGHCALTMLRKE----------GPRAFYKG 260 (303)
T ss_dssp C---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----SSCCSHHHHHHHHHHSS----------CTHHHHSC
T ss_pred C---CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc----cccCCHHHHHHHHHHHc----------ChHHhhcc
Confidence 1 2356789999999999999999999999999999863 36999999999999999 99999999
Q ss_pred hHHHHHhhhhhhhHHHHhHHHHHHHHHhhh
Q 022249 267 VGAQLARDVPFSAICWSTLEPVRFYSLEKL 296 (300)
Q Consensus 267 ~~~~~lr~~p~~~i~f~~ye~~k~~l~~~~ 296 (300)
+.|+++|.+|+.+++|.+||.+|+.+.+..
T Consensus 261 ~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 261 FMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998876554
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.7e-38 Score=289.19 Aligned_cols=213 Identities=17% Similarity=0.246 Sum_probs=170.8
Q ss_pred ccccccccCCcccccccccccCCCCCCCHHHHHHHHhHHHHHHHhhcchHHHHHHHHHhhcCCCCCCCCcccccccchhh
Q 022249 28 SSVTVSSETSSKEEALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMM 107 (300)
Q Consensus 28 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~ag~~s~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~ 107 (300)
+++.++.||..++..............++...+++|++||+++.++++|+|+||+|||++...
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~----------------- 146 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK----------------- 146 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-----------------
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC-----------------
Confidence 356667788776532221111111113457789999999999999999999999999998521
Q ss_pred hhcccCCCCCCCCCCCCCCCCcccCCCcHHHHHHHHHhhhccchhccchhhhhhhhhccceeEhhhHHHHHHHHhcccCC
Q 022249 108 LSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTG 187 (300)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~y~~~k~~l~~~~~~ 187 (300)
......|+++.+++++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+..
T Consensus 147 -------------------~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-- 205 (297)
T 1okc_A 147 -------------------GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-- 205 (297)
T ss_dssp -------------------STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--
T ss_pred -------------------CCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--
Confidence 11123688999999999999999999999999999999999999999999999765432
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccC-CCCCCCCCHHHHHHHHhhcccccCcccccccHHHHhhh
Q 022249 188 NAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTET-QSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTG 266 (300)
Q Consensus 188 ~~~~~~~~~~~~ag~~ag~~~~~v~~P~dvvktr~q~~~~~-~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~Gi~glyrG 266 (300)
..+....+++|++||++++++++|+||||+|||++... .....|+++++|+++|+++| |++|||||
T Consensus 206 ---~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~e----------G~~glyrG 272 (297)
T 1okc_A 206 ---NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDE----------GPKAFFKG 272 (297)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHH----------CGGGGGTT
T ss_pred ---CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHc----------CcCeEecc
Confidence 13477889999999999999999999999999997532 12247999999999999999 99999999
Q ss_pred hHHHHHhhhhhhhHHHHhHHHHHHHH
Q 022249 267 VGAQLARDVPFSAICWSTLEPVRFYS 292 (300)
Q Consensus 267 ~~~~~lr~~p~~~i~f~~ye~~k~~l 292 (300)
+.|+++|. +..+++|.+||.+|+.+
T Consensus 273 ~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 273 AWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999995 57899999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.1e-37 Score=283.93 Aligned_cols=198 Identities=20% Similarity=0.308 Sum_probs=168.1
Q ss_pred CCCHHHHHHHHhHHHHHHHhhcchHHHHHHHHHhhcCCCCCCCCcccccccchhhhhcccCCCCCCCCCCCCCCCCcccC
Q 022249 53 SLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNR 132 (300)
Q Consensus 53 ~~~~~~~~~aG~~ag~~s~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (300)
.++.+..+++|++||+++.++++|+|+||+|||++..... ......
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~----------------------------------~~~~~~ 49 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ----------------------------------ISAEKQ 49 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS----------------------------------CCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc----------------------------------cccccc
Confidence 4567889999999999999999999999999999863110 111236
Q ss_pred CCcHHHHHHHHHhhhccchhccchhhhhhhhhccceeEhhhHHHHHHHHhcccC-CCCCCCCchhHHHHHHHHHHHHHHH
Q 022249 133 YKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTT-GNAPMLTPYVPLVAGSVARSLACIS 211 (300)
Q Consensus 133 ~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~y~~~k~~l~~~~~-~~~~~~~~~~~~~ag~~ag~~~~~v 211 (300)
|+++++++++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+....+ ...........+++|++||++++++
T Consensus 50 ~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~ 129 (297)
T 1okc_A 50 YKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCF 129 (297)
T ss_dssp CCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999996543221 1111112467899999999999999
Q ss_pred hhhHHHHHHHHhhcccCC-CCCCCCCHHHHHHHHhhcccccCcccccccHHHHhhhhHHHHHhhhhhhhHHHHhHHHHHH
Q 022249 212 CYPIELARTRMQAFTETQ-SGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPVRF 290 (300)
Q Consensus 212 ~~P~dvvktr~q~~~~~~-~~~~y~~~~~~~~~i~~~~~~~~~~~~~~Gi~glyrG~~~~~lr~~p~~~i~f~~ye~~k~ 290 (300)
++|+|+||+|||++.... ....|+++++++++|+++| |++|||||+.++++|.+|+.+++|.+||.+|+
T Consensus 130 ~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~e----------G~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~ 199 (297)
T 1okc_A 130 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSD----------GLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG 199 (297)
T ss_dssp HHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHH----------CHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhc----------cHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999985321 2347899999999999999 99999999999999999999999999999999
Q ss_pred HHHh
Q 022249 291 YSLE 294 (300)
Q Consensus 291 ~l~~ 294 (300)
.+.+
T Consensus 200 ~~~~ 203 (297)
T 1okc_A 200 MLPD 203 (297)
T ss_dssp SSCG
T ss_pred Hhcc
Confidence 7654
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.6e-36 Score=277.13 Aligned_cols=192 Identities=23% Similarity=0.327 Sum_probs=166.9
Q ss_pred HHHHHhHHHHHHHhhcchHHHHHHHHHhhcCCCCCCCCcccccccchhhhhcccCCCCCCCCCCCCCCCCcccCCCcHHH
Q 022249 59 RAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLD 138 (300)
Q Consensus 59 ~~~aG~~ag~~s~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (300)
.+++|++||+++.++++|+|+||+|||++...... . . ......|+++++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~-----------~---~-----------------~~~~~~~~~~~~ 52 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGL-----------V---R-----------------TAASAQYRGVLG 52 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSH-----------H---H-----------------HCSCSSCSCHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccc-----------c---c-----------------cccCCCCCCHHH
Confidence 58999999999999999999999999998631100 0 0 001226889999
Q ss_pred HHHHHHhhhccchhccchhhhhhhhhccceeEhhhHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHHHHHHhhhHHHH
Q 022249 139 LFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELA 218 (300)
Q Consensus 139 ~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~y~~~k~~l~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~P~dvv 218 (300)
++++|+++||+++||||+.+++++.+|..+++|.+||.+|+.+.+..+ ..+....+++|++||++++++++|+|+|
T Consensus 53 ~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~----~~~~~~~~~ag~~ag~~~~~~~~Pld~v 128 (303)
T 2lck_A 53 TILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE----HAGIGSRLLAGSTTGALAVAVAQPTDVV 128 (303)
T ss_dssp HHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS----SCCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----CCcHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 999999999999999999999999999999999999999999865321 2457889999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHHhhcccccCcccccccHHHHhhhhHHHHHhhhhhhhHHHHhHHHHHHHHHhh
Q 022249 219 RTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPVRFYSLEK 295 (300)
Q Consensus 219 ktr~q~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~Gi~glyrG~~~~~lr~~p~~~i~f~~ye~~k~~l~~~ 295 (300)
|+|||++........|++.++++++|+++| |++|||||+.++++|.+|+.+++|.+||.+|+.+.+.
T Consensus 129 ktrlq~~~~~~~~~~~~~~~~~~~~i~~~e----------G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 129 KVRFQAQARAGGGRRYQSTVEAYKTIAREE----------GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp HHHHHHSCSCCCSSSCCCHHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHhcccccCCCCCCCCHHHHHHHHHHhc----------ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999865333347999999999999999 9999999999999999999999999999999988654
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=43.88 E-value=42 Score=23.56 Aligned_cols=37 Identities=8% Similarity=-0.086 Sum_probs=33.5
Q ss_pred cHHHHhhhhHHHHHhhhhhhhHHHHhHHHHHHHHHhh
Q 022249 259 NYRILWTGVGAQLARDVPFSAICWSTLEPVRFYSLEK 295 (300)
Q Consensus 259 Gi~glyrG~~~~~lr~~p~~~i~f~~ye~~k~~l~~~ 295 (300)
|+...+|-+..+++..+|..++.+.+|++.++.-+..
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999998876544
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=31.47 E-value=76 Score=22.17 Aligned_cols=37 Identities=8% Similarity=-0.162 Sum_probs=32.6
Q ss_pred cHHHHhhhhHHHHHhhhhhhhHHHHhHHHHHHHHHhh
Q 022249 259 NYRILWTGVGAQLARDVPFSAICWSTLEPVRFYSLEK 295 (300)
Q Consensus 259 Gi~glyrG~~~~~lr~~p~~~i~f~~ye~~k~~l~~~ 295 (300)
|+...+|-+..+++..+|..++.+.+|++.++..+..
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~ 69 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKS 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999998876543
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=15.54 E-value=73 Score=22.12 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHhhcccccCcccccccH----HHHhhhhHHHHHhhh
Q 022249 233 KPPGVWKTLVGVVNPLKSRNSSQKLQNY----RILWTGVGAQLARDV 275 (300)
Q Consensus 233 ~y~~~~~~~~~i~~~~~~~~~~~~~~Gi----~glyrG~~~~~lr~~ 275 (300)
++.++-+-+..++.+. |+ +..|+|+...+.|..
T Consensus 7 kftsvne~vsavltqy----------gvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 7 KFTAVAEQVSAVLSQY----------GITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp -CHHHHHHHHHHHHHH----------TCCGGGHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHh----------cCCCccHHHHhhhhHHHHHHH
Confidence 5666666666666665 44 789999988877653
No 8
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=11.99 E-value=45 Score=27.22 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=33.0
Q ss_pred cCCcccccccccCCcccccccccccCCCCCCCHHHHHHHHhHHHHHHHhhcc
Q 022249 24 EGSVSSVTVSSETSSKEEALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVN 75 (300)
Q Consensus 24 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~ag~~s~~~~~ 75 (300)
.|+-.-..|+-+|..|.........+.+.-..|+..+++|.+|++.+.+.-.
T Consensus 110 yGsIg~tNfGylDk~KpGIi~~Ld~k~~~v~tFLDDiVgaiaAaaaSRlah~ 161 (189)
T 1tlq_A 110 YGSIGLTNFGYLDKEKIGIIKELDESPDGIHTFLDDIVAALAAAAASRIAHT 161 (189)
T ss_dssp THHHHHHHHHHHHHSCCTHHHHTSSSCSCCCTTHHHHHHHHHHHHHHHHHTH
T ss_pred cCceeeeecccccccCcceeccccCCCCCccccHHHHHHHHHHHHHHHHHhh
Confidence 3444445555567777443332222222367899999999999999887764
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=11.76 E-value=1.2e+02 Score=21.88 Aligned_cols=36 Identities=11% Similarity=-0.036 Sum_probs=31.2
Q ss_pred cHHHHhhhhHHHHHhhhhhhhHHHHhHHHHHHHHHh
Q 022249 259 NYRILWTGVGAQLARDVPFSAICWSTLEPVRFYSLE 294 (300)
Q Consensus 259 Gi~glyrG~~~~~lr~~p~~~i~f~~ye~~k~~l~~ 294 (300)
|+...+|-+..+++..+|..++.+.+|+..++..+.
T Consensus 43 ~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~ 78 (93)
T 3cx5_H 43 AVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEF 78 (93)
T ss_dssp TSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHH
Confidence 777788888888999999999999999999886654
No 10
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=10.24 E-value=66 Score=21.14 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=16.8
Q ss_pred CcHHHHHHHHHhhhccchhc
Q 022249 134 KGTLDLFYKVVRQEGFARLW 153 (300)
Q Consensus 134 ~~~~~~~~~i~~~~G~~gly 153 (300)
+++.+.+..||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46778889999999998886
Done!