Query 022250
Match_columns 300
No_of_seqs 264 out of 1638
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:10:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0289 DapB Dihydrodipicolina 100.0 8.4E-80 1.8E-84 556.6 26.3 251 34-300 1-264 (266)
2 TIGR00036 dapB dihydrodipicoli 100.0 1.1E-72 2.4E-77 520.7 29.4 252 35-300 1-265 (266)
3 PRK00048 dihydrodipicolinate r 100.0 1.3E-67 2.9E-72 484.6 28.7 245 35-300 1-255 (257)
4 PLN02775 Probable dihydrodipic 100.0 5.5E-67 1.2E-71 481.9 26.1 255 30-300 6-280 (286)
5 TIGR02130 dapB_plant dihydrodi 100.0 8.6E-67 1.9E-71 478.8 25.6 243 36-300 1-269 (275)
6 PF05173 DapB_C: Dihydrodipico 100.0 2.7E-42 5.8E-47 287.0 12.2 127 168-300 1-132 (132)
7 PF01113 DapB_N: Dihydrodipico 100.0 3.3E-31 7.2E-36 218.1 13.5 121 36-165 1-124 (124)
8 PRK13303 L-aspartate dehydroge 99.7 3.5E-15 7.6E-20 137.9 22.9 132 35-178 1-134 (265)
9 PF01408 GFO_IDH_MocA: Oxidore 99.7 2.3E-16 4.9E-21 127.3 12.3 116 36-161 1-118 (120)
10 PRK13304 L-aspartate dehydroge 99.7 2.2E-14 4.7E-19 132.5 21.6 228 35-288 1-256 (265)
11 PRK11579 putative oxidoreducta 99.6 2.3E-14 5E-19 136.7 16.2 144 35-192 4-151 (346)
12 PRK13302 putative L-aspartate 99.6 2.9E-13 6.2E-18 125.5 21.6 227 35-288 6-262 (271)
13 COG0673 MviM Predicted dehydro 99.6 1.3E-14 2.8E-19 136.8 12.4 148 34-192 2-154 (342)
14 PRK13301 putative L-aspartate 99.6 1.3E-12 2.9E-17 119.9 22.4 231 34-288 1-259 (267)
15 TIGR01921 DAP-DH diaminopimela 99.5 1.3E-12 2.8E-17 123.6 20.4 133 35-181 3-138 (324)
16 PRK10206 putative oxidoreducta 99.5 1.9E-13 4.2E-18 130.6 14.3 145 35-192 1-151 (344)
17 PRK08374 homoserine dehydrogen 99.4 1.2E-12 2.5E-17 125.0 12.8 142 34-180 1-165 (336)
18 TIGR01761 thiaz-red thiazoliny 99.4 1.9E-12 4.1E-17 123.8 13.6 131 35-178 3-136 (343)
19 PRK06270 homoserine dehydrogen 99.4 2.2E-12 4.7E-17 123.3 12.6 142 34-180 1-168 (341)
20 KOG2741 Dimeric dihydrodiol de 99.4 1.7E-11 3.8E-16 115.4 15.5 148 32-191 3-158 (351)
21 PRK06349 homoserine dehydrogen 99.3 1.9E-11 4.1E-16 120.2 12.1 134 35-179 3-146 (426)
22 TIGR03855 NAD_NadX aspartate d 99.3 7E-10 1.5E-14 100.6 19.0 185 60-268 1-198 (229)
23 PF03447 NAD_binding_3: Homose 99.2 1.7E-11 3.7E-16 99.2 6.7 110 42-161 1-116 (117)
24 COG1712 Predicted dinucleotide 99.2 2E-10 4.3E-15 102.6 13.4 128 36-176 1-131 (255)
25 PLN02819 lysine-ketoglutarate 99.2 7.8E-10 1.7E-14 118.2 17.1 146 23-179 555-721 (1042)
26 PRK04207 glyceraldehyde-3-phos 99.1 2E-10 4.4E-15 109.8 10.2 96 35-139 1-111 (341)
27 TIGR03215 ac_ald_DH_ac acetald 99.1 6.3E-10 1.4E-14 103.9 11.5 131 35-177 1-137 (285)
28 PRK08300 acetaldehyde dehydrog 99.1 1.5E-09 3.2E-14 101.9 12.9 149 35-204 4-167 (302)
29 COG3804 Uncharacterized conser 99.0 1.1E-08 2.4E-13 94.0 14.4 126 34-168 1-135 (350)
30 PRK06392 homoserine dehydrogen 98.9 1.3E-08 2.8E-13 96.9 13.3 134 36-175 1-154 (326)
31 COG4091 Predicted homoserine d 98.8 1.9E-08 4.2E-13 95.0 9.4 123 35-164 17-158 (438)
32 PRK00436 argC N-acetyl-gamma-g 98.8 3.8E-08 8.2E-13 94.3 10.8 102 34-140 1-102 (343)
33 PTZ00187 succinyl-CoA syntheta 98.7 1.5E-07 3.3E-12 88.9 13.3 122 35-170 29-152 (317)
34 PLN00125 Succinyl-CoA ligase [ 98.7 1.9E-07 4E-12 87.9 13.5 120 35-170 12-133 (300)
35 PRK06813 homoserine dehydrogen 98.7 1.4E-07 3E-12 90.5 12.9 138 34-175 1-160 (346)
36 PF01118 Semialdhyde_dh: Semia 98.7 1.4E-07 3.1E-12 76.9 10.7 97 37-140 1-100 (121)
37 COG1748 LYS9 Saccharopine dehy 98.7 6.3E-08 1.4E-12 93.8 9.4 135 35-179 1-141 (389)
38 COG0074 SucD Succinyl-CoA synt 98.7 1.2E-07 2.6E-12 87.4 10.6 115 35-164 8-123 (293)
39 TIGR01019 sucCoAalpha succinyl 98.7 5.1E-07 1.1E-11 84.5 13.8 118 35-169 6-125 (286)
40 PRK05678 succinyl-CoA syntheta 98.6 8E-07 1.7E-11 83.4 13.5 117 35-169 8-127 (291)
41 PF03435 Saccharop_dh: Sacchar 98.5 7.3E-07 1.6E-11 86.2 12.0 132 38-180 1-141 (386)
42 PF02629 CoA_binding: CoA bind 98.5 9.4E-07 2E-11 69.3 9.1 90 35-136 3-92 (96)
43 COG0460 ThrA Homoserine dehydr 98.5 1.8E-06 3.9E-11 82.1 11.7 134 34-180 2-156 (333)
44 COG0057 GapA Glyceraldehyde-3- 98.4 1.7E-06 3.7E-11 81.7 11.0 205 35-254 1-244 (335)
45 PF13380 CoA_binding_2: CoA bi 98.4 2.1E-06 4.6E-11 69.8 9.9 110 37-170 2-114 (116)
46 PF03446 NAD_binding_2: NAD bi 98.4 2.1E-06 4.5E-11 73.5 10.2 114 35-163 1-119 (163)
47 PRK08664 aspartate-semialdehyd 98.3 2.8E-06 6E-11 81.6 10.3 98 34-138 2-108 (349)
48 PRK07634 pyrroline-5-carboxyla 98.3 8.9E-06 1.9E-10 73.5 12.2 122 35-170 4-129 (245)
49 PRK11880 pyrroline-5-carboxyla 98.3 5.4E-06 1.2E-10 76.1 10.5 101 34-146 1-103 (267)
50 TIGR01546 GAPDH-II_archae glyc 98.3 3.3E-06 7.1E-11 80.6 9.0 137 38-187 1-156 (333)
51 PRK09436 thrA bifunctional asp 98.3 1.1E-05 2.3E-10 85.7 13.6 143 34-179 464-623 (819)
52 PRK11559 garR tartronate semia 98.2 1.5E-05 3.3E-10 74.3 12.6 116 34-165 1-123 (296)
53 PLN02700 homoserine dehydrogen 98.2 1.5E-05 3.3E-10 77.2 12.6 139 35-179 3-181 (377)
54 TIGR00978 asd_EA aspartate-sem 98.2 6.5E-06 1.4E-10 78.8 9.9 95 36-137 1-104 (341)
55 TIGR01850 argC N-acetyl-gamma- 98.2 9.8E-06 2.1E-10 77.8 10.8 98 36-140 1-102 (346)
56 PRK09466 metL bifunctional asp 98.1 3.2E-05 6.9E-10 81.9 13.5 138 34-174 457-612 (810)
57 PRK06476 pyrroline-5-carboxyla 98.1 2.6E-05 5.6E-10 71.4 11.0 117 36-167 1-120 (258)
58 KOG1255 Succinyl-CoA synthetas 98.1 1.6E-05 3.5E-10 71.9 8.8 116 36-165 39-155 (329)
59 PRK05472 redox-sensing transcr 98.1 1.8E-05 3.8E-10 70.8 9.0 92 35-138 84-179 (213)
60 PF03807 F420_oxidored: NADP o 98.1 2.6E-05 5.7E-10 60.2 8.7 87 37-135 1-92 (96)
61 TIGR02717 AcCoA-syn-alpha acet 98.0 4.5E-05 9.7E-10 75.7 12.1 113 36-169 8-132 (447)
62 PRK08955 glyceraldehyde-3-phos 98.0 1.3E-05 2.8E-10 76.7 7.8 152 34-200 1-192 (334)
63 PRK14874 aspartate-semialdehyd 98.0 4.7E-05 1E-09 72.8 11.5 88 35-134 1-91 (334)
64 smart00846 Gp_dh_N Glyceraldeh 98.0 3.5E-05 7.7E-10 65.4 9.4 33 36-69 1-33 (149)
65 PF00044 Gp_dh_N: Glyceraldehy 98.0 1.6E-05 3.5E-10 67.8 7.2 34 36-70 1-34 (151)
66 smart00859 Semialdhyde_dh Semi 98.0 4.1E-05 9E-10 62.1 9.0 97 37-140 1-102 (122)
67 PRK14618 NAD(P)H-dependent gly 98.0 4.1E-05 8.9E-10 72.6 9.6 124 35-168 4-140 (328)
68 PRK12490 6-phosphogluconate de 98.0 0.00012 2.6E-09 68.7 12.5 112 36-160 1-116 (299)
69 PRK05671 aspartate-semialdehyd 97.9 6E-05 1.3E-09 72.2 10.4 121 33-171 2-137 (336)
70 PRK09599 6-phosphogluconate de 97.9 0.00017 3.6E-09 67.7 13.2 118 36-166 1-122 (301)
71 PLN02688 pyrroline-5-carboxyla 97.9 9.3E-05 2E-09 67.8 10.0 113 36-167 1-121 (266)
72 PRK07679 pyrroline-5-carboxyla 97.9 0.00024 5.3E-09 65.9 12.8 117 36-168 4-127 (279)
73 PRK00094 gpsA NAD(P)H-dependen 97.8 9.4E-05 2E-09 69.4 9.7 121 35-166 1-139 (325)
74 PRK11863 N-acetyl-gamma-glutam 97.8 0.0001 2.2E-09 70.0 9.7 81 34-137 1-81 (313)
75 COG0002 ArgC Acetylglutamate s 97.8 9.5E-05 2.1E-09 70.5 9.3 100 34-138 1-102 (349)
76 PRK06928 pyrroline-5-carboxyla 97.8 0.00015 3.3E-09 67.3 10.1 119 35-170 1-127 (277)
77 TIGR00872 gnd_rel 6-phosphoglu 97.8 0.00034 7.4E-09 65.6 12.4 115 36-163 1-118 (298)
78 COG2344 AT-rich DNA-binding pr 97.8 0.00013 2.9E-09 63.9 8.6 91 34-136 83-176 (211)
79 PRK06598 aspartate-semialdehyd 97.8 0.0003 6.5E-09 68.1 12.0 120 35-170 1-140 (369)
80 PRK07680 late competence prote 97.8 0.00023 5E-09 65.8 10.9 99 36-147 1-106 (273)
81 PF01210 NAD_Gly3P_dh_N: NAD-d 97.8 0.0002 4.3E-09 60.9 9.6 124 37-169 1-139 (157)
82 PRK12491 pyrroline-5-carboxyla 97.8 0.00034 7.5E-09 65.0 11.9 120 34-170 1-127 (272)
83 PRK05447 1-deoxy-D-xylulose 5- 97.7 0.00019 4E-09 69.8 10.0 121 35-160 1-145 (385)
84 TIGR03450 mycothiol_INO1 inosi 97.7 0.00034 7.4E-09 66.5 11.5 137 36-179 1-200 (351)
85 PRK08040 putative semialdehyde 97.7 0.00017 3.6E-09 69.1 9.6 93 34-137 3-97 (336)
86 PLN02358 glyceraldehyde-3-phos 97.7 9.2E-05 2E-09 70.9 7.7 196 35-251 5-245 (338)
87 TIGR01505 tartro_sem_red 2-hyd 97.7 0.00047 1E-08 64.2 12.2 111 37-163 1-118 (291)
88 PTZ00023 glyceraldehyde-3-phos 97.7 0.00011 2.5E-09 70.2 7.8 99 34-137 1-121 (337)
89 TIGR03376 glycerol3P_DH glycer 97.7 7.5E-05 1.6E-09 71.7 6.5 126 37-170 1-154 (342)
90 PLN02383 aspartate semialdehyd 97.7 0.00027 5.9E-09 67.9 10.3 94 32-137 4-100 (344)
91 PTZ00345 glycerol-3-phosphate 97.7 0.00042 9.1E-09 67.1 11.4 129 35-170 11-167 (365)
92 PLN02968 Probable N-acetyl-gam 97.7 0.00024 5.2E-09 69.2 9.8 98 34-139 37-136 (381)
93 PRK15059 tartronate semialdehy 97.7 0.00084 1.8E-08 63.0 12.8 117 36-170 1-124 (292)
94 PRK14620 NAD(P)H-dependent gly 97.6 0.00075 1.6E-08 63.9 12.6 123 36-166 1-139 (326)
95 PF10727 Rossmann-like: Rossma 97.6 7.9E-05 1.7E-09 61.7 4.9 93 35-141 10-107 (127)
96 PRK15425 gapA glyceraldehyde-3 97.6 0.00016 3.5E-09 69.0 7.5 132 34-181 1-164 (331)
97 PRK15461 NADH-dependent gamma- 97.6 0.00085 1.8E-08 62.9 12.3 116 35-166 1-123 (296)
98 PTZ00431 pyrroline carboxylate 97.6 0.00059 1.3E-08 62.8 10.6 93 36-148 4-101 (260)
99 PRK07729 glyceraldehyde-3-phos 97.6 0.00022 4.7E-09 68.4 7.7 98 34-137 1-120 (343)
100 COG0345 ProC Pyrroline-5-carbo 97.6 0.00047 1E-08 63.9 9.7 118 35-169 1-123 (266)
101 TIGR01532 E4PD_g-proteo D-eryt 97.6 0.00026 5.5E-09 67.6 8.1 136 37-181 1-166 (325)
102 COG0240 GpsA Glycerol-3-phosph 97.5 0.00052 1.1E-08 65.3 9.8 128 35-170 1-142 (329)
103 COG0136 Asd Aspartate-semialde 97.5 0.0013 2.9E-08 62.6 12.3 124 35-169 1-137 (334)
104 TIGR01296 asd_B aspartate-semi 97.5 0.00063 1.4E-08 65.2 10.3 86 37-134 1-89 (339)
105 PRK06728 aspartate-semialdehyd 97.5 0.00065 1.4E-08 65.4 9.7 117 35-171 5-138 (347)
106 PLN02712 arogenate dehydrogena 97.5 0.0017 3.7E-08 67.6 13.4 125 26-168 362-490 (667)
107 PRK14619 NAD(P)H-dependent gly 97.5 0.001 2.2E-08 62.6 10.6 104 35-166 4-115 (308)
108 COG1023 Gnd Predicted 6-phosph 97.4 0.00067 1.5E-08 61.8 8.6 95 36-139 1-122 (300)
109 PLN02237 glyceraldehyde-3-phos 97.4 0.0005 1.1E-08 67.7 8.2 140 32-181 72-243 (442)
110 TIGR01692 HIBADH 3-hydroxyisob 97.4 0.0017 3.7E-08 60.5 11.3 113 40-169 1-120 (288)
111 PRK07403 glyceraldehyde-3-phos 97.3 0.00049 1.1E-08 65.9 6.9 98 35-137 1-121 (337)
112 PLN02256 arogenate dehydrogena 97.3 0.0031 6.8E-08 59.6 12.3 77 35-126 36-112 (304)
113 PLN03096 glyceraldehyde-3-phos 97.3 0.00055 1.2E-08 66.7 7.4 134 32-181 57-226 (395)
114 PRK13535 erythrose 4-phosphate 97.3 0.00055 1.2E-08 65.6 6.9 137 35-181 1-168 (336)
115 PRK07531 bifunctional 3-hydrox 97.3 0.0018 4E-08 65.1 10.7 119 35-165 4-141 (495)
116 cd01076 NAD_bind_1_Glu_DH NAD( 97.3 0.00099 2.1E-08 60.4 7.9 118 34-167 30-161 (227)
117 PRK12439 NAD(P)H-dependent gly 97.3 0.0049 1.1E-07 59.0 12.9 126 35-168 7-146 (341)
118 PF05368 NmrA: NmrA-like famil 97.3 0.0019 4.2E-08 57.6 9.5 111 38-160 1-138 (233)
119 PRK07502 cyclohexadienyl dehyd 97.2 0.0061 1.3E-07 57.2 13.0 102 35-151 6-113 (307)
120 cd01065 NAD_bind_Shikimate_DH 97.2 0.00089 1.9E-08 55.9 6.6 110 35-160 19-136 (155)
121 COG4693 PchG Oxidoreductase (N 97.2 0.0013 2.8E-08 61.1 7.6 109 36-158 5-118 (361)
122 PLN02712 arogenate dehydrogena 97.2 0.0058 1.3E-07 63.7 13.2 78 34-126 51-128 (667)
123 TIGR01851 argC_other N-acetyl- 97.2 0.0023 5E-08 60.6 9.3 78 36-136 2-79 (310)
124 PTZ00142 6-phosphogluconate de 97.1 0.0068 1.5E-07 60.7 12.8 115 35-158 1-121 (470)
125 PRK08655 prephenate dehydrogen 97.1 0.0082 1.8E-07 59.5 12.8 104 36-152 1-106 (437)
126 COG2910 Putative NADH-flavin r 97.0 0.0021 4.6E-08 56.5 7.1 33 36-69 1-33 (211)
127 PLN02522 ATP citrate (pro-S)-l 97.0 0.0034 7.3E-08 64.5 9.6 124 35-169 10-141 (608)
128 PLN02272 glyceraldehyde-3-phos 97.0 0.0018 4E-08 63.6 7.3 132 35-181 85-249 (421)
129 PRK07417 arogenate dehydrogena 97.0 0.0067 1.4E-07 56.3 10.7 98 36-149 1-102 (279)
130 TIGR00715 precor6x_red precorr 97.0 0.0029 6.4E-08 58.4 8.1 126 36-177 1-146 (256)
131 COG2084 MmsB 3-hydroxyisobutyr 97.0 0.0098 2.1E-07 55.8 11.4 114 36-164 1-121 (286)
132 TIGR03026 NDP-sugDHase nucleot 97.0 0.0079 1.7E-07 58.9 11.3 125 36-171 1-161 (411)
133 PRK08223 hypothetical protein; 96.9 0.0074 1.6E-07 56.6 10.4 33 35-69 27-59 (287)
134 TIGR00465 ilvC ketol-acid redu 96.9 0.0058 1.3E-07 58.1 9.8 113 36-168 4-121 (314)
135 PRK08618 ornithine cyclodeamin 96.9 0.0017 3.8E-08 61.7 6.3 92 36-138 128-223 (325)
136 COG1810 Uncharacterized protei 96.9 0.037 7.9E-07 49.8 14.0 159 35-211 1-169 (224)
137 PLN02350 phosphogluconate dehy 96.9 0.014 3.1E-07 58.7 12.8 117 35-160 6-129 (493)
138 PF13460 NAD_binding_10: NADH( 96.9 0.0083 1.8E-07 51.1 9.4 82 38-135 1-94 (183)
139 CHL00194 ycf39 Ycf39; Provisio 96.9 0.014 3.1E-07 54.6 11.9 111 36-160 1-140 (317)
140 PRK06130 3-hydroxybutyryl-CoA 96.8 0.007 1.5E-07 56.8 9.5 101 35-144 4-122 (311)
141 PRK08507 prephenate dehydrogen 96.8 0.015 3.3E-07 53.7 11.4 78 36-128 1-80 (275)
142 PRK08818 prephenate dehydrogen 96.8 0.02 4.4E-07 55.6 12.5 70 35-128 4-73 (370)
143 TIGR02853 spore_dpaA dipicolin 96.7 0.0089 1.9E-07 56.1 9.4 109 36-166 152-265 (287)
144 PLN02858 fructose-bisphosphate 96.7 0.019 4.1E-07 64.5 13.4 120 34-170 323-451 (1378)
145 PF03721 UDPG_MGDP_dh_N: UDP-g 96.7 0.005 1.1E-07 54.0 7.1 123 36-167 1-155 (185)
146 PF02593 dTMP_synthase: Thymid 96.7 0.035 7.6E-07 50.1 12.3 149 44-212 5-167 (217)
147 cd01483 E1_enzyme_family Super 96.7 0.02 4.3E-07 47.6 10.1 121 37-165 1-123 (143)
148 PRK05808 3-hydroxybutyryl-CoA 96.7 0.012 2.5E-07 54.6 9.5 100 35-144 3-125 (282)
149 PRK09414 glutamate dehydrogena 96.6 0.015 3.3E-07 57.8 10.0 119 35-166 232-368 (445)
150 PRK07819 3-hydroxybutyryl-CoA 96.6 0.021 4.6E-07 53.3 10.5 99 36-144 6-128 (286)
151 cd05211 NAD_bind_Glu_Leu_Phe_V 96.5 0.013 2.9E-07 52.7 8.7 117 35-167 23-152 (217)
152 PLN02858 fructose-bisphosphate 96.5 0.03 6.4E-07 62.9 13.2 115 34-163 3-125 (1378)
153 KOG0409 Predicted dehydrogenas 96.5 0.024 5.3E-07 53.3 10.4 129 25-170 26-161 (327)
154 PRK06091 membrane protein FdrA 96.5 0.013 2.8E-07 59.4 9.1 75 87-165 101-175 (555)
155 COG1832 Predicted CoA-binding 96.5 0.016 3.5E-07 48.4 8.2 102 36-157 17-121 (140)
156 KOG0455 Homoserine dehydrogena 96.5 0.043 9.3E-07 50.6 11.3 149 35-190 3-173 (364)
157 PRK05479 ketol-acid reductoiso 96.4 0.023 5E-07 54.4 10.1 93 36-144 18-114 (330)
158 TIGR02355 moeB molybdopterin s 96.4 0.019 4.1E-07 52.4 9.1 33 35-69 24-56 (240)
159 PTZ00434 cytosolic glyceraldeh 96.4 0.0044 9.5E-08 59.8 5.0 35 34-69 2-40 (361)
160 cd05213 NAD_bind_Glutamyl_tRNA 96.4 0.012 2.6E-07 55.7 7.9 80 35-127 178-259 (311)
161 TIGR01534 GAPDH-I glyceraldehy 96.4 0.0097 2.1E-07 56.9 7.2 97 37-137 1-121 (327)
162 PRK15181 Vi polysaccharide bio 96.4 0.025 5.5E-07 53.8 10.1 32 35-67 15-46 (348)
163 COG3367 Uncharacterized conser 96.4 0.0097 2.1E-07 56.4 6.9 104 48-158 15-124 (339)
164 TIGR00873 gnd 6-phosphoglucona 96.4 0.062 1.3E-06 53.9 13.1 123 37-169 1-128 (467)
165 PF07755 DUF1611: Protein of u 96.4 0.0087 1.9E-07 56.5 6.6 87 67-162 1-93 (301)
166 TIGR01915 npdG NADPH-dependent 96.3 0.032 6.9E-07 49.9 9.9 95 36-141 1-105 (219)
167 PRK07530 3-hydroxybutyryl-CoA 96.3 0.027 5.9E-07 52.4 9.7 33 35-70 4-36 (292)
168 COG2099 CobK Precorrin-6x redu 96.3 0.054 1.2E-06 49.8 11.2 135 34-180 1-148 (257)
169 PRK08306 dipicolinate synthase 96.3 0.023 4.9E-07 53.5 9.1 114 35-169 152-269 (296)
170 PRK08328 hypothetical protein; 96.3 0.028 6.1E-07 51.0 9.3 33 35-69 27-59 (231)
171 PLN02696 1-deoxy-D-xylulose-5- 96.3 0.037 8.1E-07 54.9 10.7 122 35-160 57-203 (454)
172 PF04321 RmlD_sub_bind: RmlD s 96.3 0.013 2.8E-07 54.6 7.2 79 36-134 1-97 (286)
173 PRK11908 NAD-dependent epimera 96.3 0.027 5.9E-07 53.3 9.5 33 35-67 1-33 (347)
174 PRK08229 2-dehydropantoate 2-r 96.2 0.024 5.3E-07 53.7 9.1 98 34-142 1-112 (341)
175 PTZ00353 glycosomal glyceralde 96.2 0.0059 1.3E-07 58.6 4.6 34 34-68 1-34 (342)
176 cd00757 ThiF_MoeB_HesA_family 96.2 0.046 1E-06 49.3 10.2 124 35-166 21-146 (228)
177 cd01075 NAD_bind_Leu_Phe_Val_D 96.1 0.031 6.8E-07 49.5 8.7 107 36-165 29-139 (200)
178 PRK08293 3-hydroxybutyryl-CoA 96.1 0.036 7.7E-07 51.6 9.4 100 36-144 4-127 (287)
179 PRK09260 3-hydroxybutyryl-CoA 96.1 0.032 6.9E-07 51.9 9.0 99 36-145 2-125 (288)
180 PRK08605 D-lactate dehydrogena 96.1 0.029 6.2E-07 53.6 8.8 104 36-157 147-255 (332)
181 TIGR01745 asd_gamma aspartate- 96.1 0.025 5.5E-07 54.8 8.3 119 36-170 1-139 (366)
182 TIGR02371 ala_DH_arch alanine 96.0 0.0081 1.8E-07 57.2 4.7 91 36-137 129-223 (325)
183 PRK08644 thiamine biosynthesis 96.0 0.045 9.8E-07 49.0 9.3 34 35-70 28-61 (212)
184 PRK06046 alanine dehydrogenase 96.0 0.012 2.5E-07 56.1 5.8 91 35-137 129-224 (326)
185 PLN02545 3-hydroxybutyryl-CoA 96.0 0.033 7.1E-07 52.0 8.7 33 35-70 4-36 (295)
186 TIGR03649 ergot_EASG ergot alk 96.0 0.087 1.9E-06 48.3 11.3 120 37-164 1-136 (285)
187 PLN02778 3,5-epimerase/4-reduc 96.0 0.047 1E-06 51.0 9.6 36 28-64 2-37 (298)
188 KOG2742 Predicted oxidoreducta 96.0 0.0032 6.9E-08 59.9 1.6 106 38-154 5-111 (367)
189 PLN02353 probable UDP-glucose 96.0 0.078 1.7E-06 53.2 11.5 123 35-165 1-158 (473)
190 PLN03139 formate dehydrogenase 95.9 0.05 1.1E-06 53.2 9.8 66 35-115 199-264 (386)
191 cd01485 E1-1_like Ubiquitin ac 95.9 0.066 1.4E-06 47.4 9.7 124 35-166 19-148 (198)
192 PRK06129 3-hydroxyacyl-CoA deh 95.9 0.086 1.9E-06 49.6 11.1 73 35-116 2-92 (308)
193 PRK14806 bifunctional cyclohex 95.9 0.14 3E-06 53.8 13.7 102 36-151 4-110 (735)
194 PRK03369 murD UDP-N-acetylmura 95.9 0.15 3.3E-06 51.1 13.4 133 36-191 13-171 (488)
195 PRK12475 thiamine/molybdopteri 95.9 0.068 1.5E-06 51.3 10.3 34 35-70 24-57 (338)
196 PRK07574 formate dehydrogenase 95.9 0.075 1.6E-06 52.0 10.6 65 36-115 193-257 (385)
197 PRK07411 hypothetical protein; 95.9 0.045 9.7E-07 53.6 9.1 98 35-140 38-164 (390)
198 TIGR02356 adenyl_thiF thiazole 95.8 0.09 1.9E-06 46.6 10.2 126 35-168 21-148 (202)
199 PF00899 ThiF: ThiF family; I 95.8 0.048 1E-06 44.8 7.9 121 36-164 3-125 (135)
200 COG1052 LdhA Lactate dehydroge 95.8 0.059 1.3E-06 51.5 9.6 112 10-138 116-235 (324)
201 KOG2018 Predicted dinucleotide 95.8 0.057 1.2E-06 51.2 9.0 121 38-165 77-246 (430)
202 COG1260 INO1 Myo-inositol-1-ph 95.7 0.063 1.4E-06 51.4 9.2 145 33-180 3-210 (362)
203 cd05313 NAD_bind_2_Glu_DH NAD( 95.7 0.11 2.3E-06 48.1 10.5 137 35-185 38-201 (254)
204 cd01487 E1_ThiF_like E1_ThiF_l 95.7 0.068 1.5E-06 46.3 8.8 31 37-69 1-31 (174)
205 PRK11064 wecC UDP-N-acetyl-D-m 95.7 0.15 3.2E-06 50.3 12.2 33 35-70 3-35 (415)
206 PRK11199 tyrA bifunctional cho 95.7 0.059 1.3E-06 52.4 9.2 68 34-128 97-164 (374)
207 PRK10124 putative UDP-glucose 95.7 0.13 2.7E-06 51.5 11.7 85 36-136 144-236 (463)
208 PRK06545 prephenate dehydrogen 95.7 0.18 3.8E-06 48.6 12.4 102 37-151 2-108 (359)
209 PRK06035 3-hydroxyacyl-CoA deh 95.7 0.061 1.3E-06 50.1 9.0 32 36-70 4-35 (291)
210 PRK05600 thiamine biosynthesis 95.7 0.065 1.4E-06 52.1 9.4 96 35-138 41-164 (370)
211 PRK07688 thiamine/molybdopteri 95.6 0.12 2.5E-06 49.7 10.8 33 35-69 24-56 (339)
212 COG1091 RfbD dTDP-4-dehydrorha 95.6 0.042 9.2E-07 51.4 7.5 78 36-134 1-96 (281)
213 PRK06444 prephenate dehydrogen 95.6 0.037 8.1E-07 49.2 6.8 28 36-64 1-28 (197)
214 TIGR03023 WcaJ_sugtrans Undeca 95.5 0.16 3.5E-06 50.2 11.8 89 35-136 128-224 (451)
215 PRK07878 molybdopterin biosynt 95.5 0.082 1.8E-06 51.7 9.4 96 35-138 42-165 (392)
216 PF01488 Shikimate_DH: Shikima 95.5 0.024 5.2E-07 46.9 4.9 72 35-116 12-85 (135)
217 COG1064 AdhP Zn-dependent alco 95.5 0.089 1.9E-06 50.5 9.3 138 36-191 168-311 (339)
218 PRK08762 molybdopterin biosynt 95.5 0.099 2.1E-06 50.7 9.8 33 35-69 135-167 (376)
219 PLN00016 RNA-binding protein; 95.4 0.1 2.2E-06 50.3 9.7 95 34-134 51-161 (378)
220 TIGR03570 NeuD_NnaD sugar O-ac 95.4 0.16 3.5E-06 43.6 10.1 86 37-134 1-87 (201)
221 TIGR03025 EPS_sugtrans exopoly 95.4 0.18 3.9E-06 49.8 11.6 88 36-136 126-221 (445)
222 PRK08125 bifunctional UDP-gluc 95.4 0.16 3.4E-06 52.9 11.4 43 22-67 305-347 (660)
223 cd01492 Aos1_SUMO Ubiquitin ac 95.3 0.12 2.5E-06 45.8 8.9 121 35-164 21-143 (197)
224 PRK05690 molybdopterin biosynt 95.3 0.19 4.1E-06 46.0 10.5 33 35-69 32-64 (245)
225 PRK06522 2-dehydropantoate 2-r 95.3 0.17 3.7E-06 46.7 10.4 95 36-142 1-105 (304)
226 PF00208 ELFV_dehydrog: Glutam 95.3 0.093 2E-06 48.1 8.4 120 35-167 32-172 (244)
227 PRK14106 murD UDP-N-acetylmura 95.2 0.34 7.4E-06 47.7 13.0 140 36-191 6-164 (450)
228 COG1179 Dinucleotide-utilizing 95.2 0.11 2.5E-06 47.5 8.7 94 36-136 31-152 (263)
229 PF02737 3HCDH_N: 3-hydroxyacy 95.2 0.017 3.7E-07 50.3 3.4 30 37-69 1-30 (180)
230 PRK08289 glyceraldehyde-3-phos 95.2 0.094 2E-06 52.3 8.8 33 35-68 127-163 (477)
231 PF00056 Ldh_1_N: lactate/mala 95.2 0.041 8.9E-07 46.1 5.4 125 36-181 1-133 (141)
232 cd00755 YgdL_like Family of ac 95.2 0.14 3.1E-06 46.5 9.3 121 35-162 11-133 (231)
233 PLN02427 UDP-apiose/xylose syn 95.2 0.14 3E-06 49.3 9.9 33 35-67 14-46 (386)
234 PRK09496 trkA potassium transp 95.1 0.11 2.4E-06 51.0 9.1 128 36-175 1-136 (453)
235 TIGR01214 rmlD dTDP-4-dehydror 95.1 0.11 2.3E-06 47.4 8.5 59 37-115 1-59 (287)
236 PRK15057 UDP-glucose 6-dehydro 95.1 0.25 5.5E-06 48.3 11.5 30 36-69 1-30 (388)
237 PRK09987 dTDP-4-dehydrorhamnos 95.1 0.11 2.5E-06 48.2 8.8 86 36-138 1-104 (299)
238 PRK13243 glyoxylate reductase; 95.1 0.11 2.3E-06 49.8 8.7 64 35-115 150-213 (333)
239 COG4569 MhpF Acetaldehyde dehy 95.1 0.11 2.5E-06 46.5 8.1 98 33-138 2-103 (310)
240 TIGR03022 WbaP_sugtrans Undeca 95.1 0.29 6.3E-06 48.5 12.0 89 35-135 125-221 (456)
241 PRK08057 cobalt-precorrin-6x r 95.0 0.14 3E-06 47.2 8.8 124 34-177 1-144 (248)
242 COG0287 TyrA Prephenate dehydr 95.0 0.3 6.5E-06 45.7 11.1 105 34-152 2-112 (279)
243 TIGR02354 thiF_fam2 thiamine b 95.0 0.18 3.9E-06 44.8 9.2 34 35-70 21-54 (200)
244 PRK11150 rfaD ADP-L-glycero-D- 95.0 0.14 3E-06 47.4 8.9 32 38-70 2-33 (308)
245 TIGR00243 Dxr 1-deoxy-D-xylulo 94.9 0.23 4.9E-06 48.5 10.4 99 35-137 1-124 (389)
246 PRK07066 3-hydroxybutyryl-CoA 94.9 0.15 3.2E-06 48.7 9.0 32 36-70 8-39 (321)
247 PF02670 DXP_reductoisom: 1-de 94.9 0.13 2.9E-06 42.7 7.5 32 38-69 1-33 (129)
248 PRK06141 ornithine cyclodeamin 94.9 0.04 8.6E-07 52.2 5.1 88 36-134 126-216 (314)
249 PRK00258 aroE shikimate 5-dehy 94.9 0.11 2.4E-06 48.2 7.9 127 35-179 123-255 (278)
250 PRK07340 ornithine cyclodeamin 94.9 0.053 1.2E-06 51.2 5.8 90 36-137 126-218 (304)
251 PRK13403 ketol-acid reductoiso 94.8 0.14 3.1E-06 48.9 8.6 149 36-212 17-168 (335)
252 PRK05865 hypothetical protein; 94.8 0.21 4.6E-06 53.6 10.7 110 36-160 1-121 (854)
253 PRK08268 3-hydroxy-acyl-CoA de 94.8 0.18 3.8E-06 51.1 9.7 32 36-70 8-39 (507)
254 PRK06436 glycerate dehydrogena 94.8 0.18 4E-06 47.6 9.2 59 35-114 122-181 (303)
255 PF02826 2-Hacid_dh_C: D-isome 94.7 0.095 2E-06 45.4 6.6 64 35-114 36-99 (178)
256 KOG2380 Prephenate dehydrogena 94.7 0.063 1.4E-06 51.5 5.7 75 35-124 52-126 (480)
257 TIGR02992 ectoine_eutC ectoine 94.7 0.069 1.5E-06 50.8 6.1 88 36-134 130-221 (326)
258 KOG1502 Flavonol reductase/cin 94.7 0.32 7E-06 46.5 10.4 96 34-136 5-127 (327)
259 PRK14851 hypothetical protein; 94.6 0.12 2.6E-06 54.2 8.2 32 35-68 43-74 (679)
260 PRK05597 molybdopterin biosynt 94.6 0.23 4.9E-06 48.0 9.6 98 35-140 28-154 (355)
261 COG0111 SerA Phosphoglycerate 94.6 0.26 5.6E-06 47.1 9.8 64 35-114 142-205 (324)
262 PRK07877 hypothetical protein; 94.6 0.19 4.2E-06 52.9 9.6 94 35-138 107-229 (722)
263 PRK05476 S-adenosyl-L-homocyst 94.6 0.18 3.8E-06 50.0 8.9 101 35-152 212-314 (425)
264 PRK04663 murD UDP-N-acetylmura 94.6 0.92 2E-05 44.7 14.0 135 35-191 7-162 (438)
265 cd01491 Ube1_repeat1 Ubiquitin 94.6 0.2 4.3E-06 47.1 8.7 124 35-170 19-144 (286)
266 PLN00141 Tic62-NAD(P)-related 94.5 0.47 1E-05 42.7 11.0 33 35-68 17-49 (251)
267 PRK15116 sulfur acceptor prote 94.5 0.29 6.3E-06 45.6 9.7 121 35-162 30-152 (268)
268 COG1086 Predicted nucleoside-d 94.5 0.18 4E-06 51.3 8.9 89 35-135 116-209 (588)
269 PRK05086 malate dehydrogenase; 94.5 0.36 7.9E-06 45.7 10.6 71 36-114 1-77 (312)
270 cd01336 MDH_cytoplasmic_cytoso 94.5 0.24 5.2E-06 47.3 9.4 34 35-69 2-41 (325)
271 PRK02472 murD UDP-N-acetylmura 94.5 0.89 1.9E-05 44.6 13.6 138 36-191 6-164 (447)
272 PF10087 DUF2325: Uncharacteri 94.4 0.5 1.1E-05 36.8 9.5 83 37-141 1-87 (97)
273 PRK00141 murD UDP-N-acetylmura 94.4 1.1 2.4E-05 44.7 14.3 118 35-168 15-159 (473)
274 PRK12320 hypothetical protein; 94.4 0.3 6.5E-06 51.3 10.4 84 36-136 1-100 (699)
275 COG2085 Predicted dinucleotide 94.3 0.35 7.7E-06 43.4 9.3 88 35-135 1-91 (211)
276 PRK08291 ectoine utilization p 94.3 0.11 2.3E-06 49.6 6.4 88 36-134 133-224 (330)
277 PRK06249 2-dehydropantoate 2-r 94.3 0.48 1E-05 44.6 10.7 96 35-142 5-111 (313)
278 PLN00106 malate dehydrogenase 94.3 0.23 4.9E-06 47.5 8.6 36 35-70 18-53 (323)
279 PRK15204 undecaprenyl-phosphat 94.2 0.59 1.3E-05 46.9 11.8 92 36-138 147-242 (476)
280 PF02571 CbiJ: Precorrin-6x re 94.2 0.54 1.2E-05 43.3 10.7 126 36-177 1-147 (249)
281 PTZ00117 malate dehydrogenase; 94.2 0.29 6.3E-06 46.5 9.2 34 35-70 5-38 (319)
282 PRK14852 hypothetical protein; 94.2 0.24 5.2E-06 53.6 9.4 32 35-68 332-363 (989)
283 PLN02260 probable rhamnose bio 94.2 0.22 4.8E-06 51.7 9.1 29 34-63 379-407 (668)
284 PTZ00082 L-lactate dehydrogena 94.2 2.1 4.5E-05 40.8 14.9 33 35-70 6-39 (321)
285 TIGR00936 ahcY adenosylhomocys 94.2 0.5 1.1E-05 46.6 10.9 84 35-134 195-279 (406)
286 COG0569 TrkA K+ transport syst 94.1 0.27 5.9E-06 44.4 8.3 126 36-175 1-132 (225)
287 COG0373 HemA Glutamyl-tRNA red 94.1 0.15 3.3E-06 50.2 7.1 85 35-132 178-267 (414)
288 PRK06901 aspartate-semialdehyd 94.1 0.14 3E-06 48.9 6.6 115 35-169 3-134 (322)
289 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.9 0.25 5.4E-06 50.0 8.6 32 36-70 6-37 (503)
290 cd05293 LDH_1 A subgroup of L- 93.9 0.2 4.4E-06 47.5 7.6 71 35-113 3-78 (312)
291 PRK05993 short chain dehydroge 93.9 0.46 9.9E-06 43.4 9.6 79 34-139 3-85 (277)
292 COG0300 DltE Short-chain dehyd 93.9 0.56 1.2E-05 43.6 10.1 88 32-139 3-93 (265)
293 PRK00045 hemA glutamyl-tRNA re 93.8 0.096 2.1E-06 51.7 5.3 79 36-127 183-266 (423)
294 cd01490 Ube1_repeat2 Ubiquitin 93.8 0.35 7.5E-06 48.1 9.0 96 37-140 1-134 (435)
295 PRK12921 2-dehydropantoate 2-r 93.8 0.34 7.3E-06 44.9 8.6 95 36-142 1-107 (305)
296 KOG1494 NAD-dependent malate d 93.7 0.13 2.9E-06 48.1 5.6 36 34-69 27-62 (345)
297 PLN02477 glutamate dehydrogena 93.7 0.48 1E-05 46.8 9.9 116 35-167 206-336 (410)
298 COG0743 Dxr 1-deoxy-D-xylulose 93.7 0.52 1.1E-05 45.6 9.6 97 35-137 1-120 (385)
299 cd01484 E1-2_like Ubiquitin ac 93.6 0.52 1.1E-05 43.0 9.3 31 37-69 1-31 (234)
300 PLN02166 dTDP-glucose 4,6-dehy 93.6 0.38 8.3E-06 47.6 9.2 33 35-69 120-152 (436)
301 cd01337 MDH_glyoxysomal_mitoch 93.6 0.26 5.6E-06 46.8 7.6 35 36-70 1-35 (310)
302 PF07991 IlvN: Acetohydroxy ac 93.6 0.35 7.6E-06 41.8 7.6 149 36-212 5-157 (165)
303 PTZ00079 NADP-specific glutama 93.6 0.67 1.4E-05 46.3 10.6 138 36-187 238-402 (454)
304 KOG0172 Lysine-ketoglutarate r 93.5 0.27 5.8E-06 48.0 7.5 121 35-170 2-130 (445)
305 PRK12480 D-lactate dehydrogena 93.4 0.45 9.7E-06 45.5 9.0 61 36-115 147-207 (330)
306 TIGR01035 hemA glutamyl-tRNA r 93.4 0.26 5.7E-06 48.5 7.6 80 36-128 181-265 (417)
307 PRK04308 murD UDP-N-acetylmura 93.4 2.3 5E-05 41.9 14.3 142 36-191 6-168 (445)
308 PLN02695 GDP-D-mannose-3',5'-e 93.4 0.51 1.1E-05 45.4 9.4 32 35-67 21-52 (370)
309 PLN02206 UDP-glucuronate decar 93.3 0.47 1E-05 47.1 9.2 30 36-66 120-149 (442)
310 PLN00203 glutamyl-tRNA reducta 93.3 0.22 4.8E-06 50.6 6.9 83 35-127 266-353 (519)
311 PRK06395 phosphoribosylamine-- 93.2 0.52 1.1E-05 46.8 9.4 92 34-134 1-93 (435)
312 PRK15182 Vi polysaccharide bio 93.2 0.39 8.4E-06 47.6 8.4 32 35-70 6-37 (425)
313 cd00401 AdoHcyase S-adenosyl-L 93.2 0.46 9.9E-06 47.0 8.7 82 36-133 203-285 (413)
314 KOG2711 Glycerol-3-phosphate d 93.2 0.41 8.8E-06 46.0 8.0 129 34-170 20-179 (372)
315 PRK06947 glucose-1-dehydrogena 93.1 0.34 7.4E-06 43.0 7.3 86 34-139 1-89 (248)
316 PRK01438 murD UDP-N-acetylmura 93.1 1.4 3.1E-05 43.7 12.4 31 36-69 17-47 (480)
317 PLN02657 3,8-divinyl protochlo 93.1 0.64 1.4E-05 45.3 9.6 33 35-68 60-92 (390)
318 TIGR03466 HpnA hopanoid-associ 93.1 0.4 8.6E-06 44.3 7.9 32 36-68 1-32 (328)
319 TIGR01327 PGDH D-3-phosphoglyc 93.1 0.41 9E-06 48.6 8.6 64 36-115 139-202 (525)
320 TIGR01181 dTDP_gluc_dehyt dTDP 93.1 0.76 1.6E-05 42.0 9.7 30 37-66 1-31 (317)
321 PRK06988 putative formyltransf 93.0 0.22 4.9E-06 47.2 6.2 75 34-114 1-85 (312)
322 PRK14030 glutamate dehydrogena 93.0 0.66 1.4E-05 46.2 9.5 119 35-166 228-368 (445)
323 PRK05693 short chain dehydroge 92.9 0.77 1.7E-05 41.6 9.4 78 36-140 2-82 (274)
324 PF01073 3Beta_HSD: 3-beta hyd 92.9 0.73 1.6E-05 42.8 9.4 31 39-69 1-31 (280)
325 PTZ00325 malate dehydrogenase; 92.9 1.3 2.8E-05 42.3 11.2 36 34-69 7-42 (321)
326 PRK14031 glutamate dehydrogena 92.8 0.71 1.5E-05 46.0 9.6 117 36-165 229-366 (444)
327 PRK15438 erythronate-4-phospha 92.7 0.38 8.2E-06 47.0 7.4 60 35-114 116-175 (378)
328 COG1042 Acyl-CoA synthetase (N 92.7 0.71 1.5E-05 47.7 9.7 112 36-166 11-132 (598)
329 PRK14982 acyl-ACP reductase; P 92.6 0.23 4.9E-06 47.9 5.6 33 36-69 156-189 (340)
330 PLN02240 UDP-glucose 4-epimera 92.6 0.86 1.9E-05 42.8 9.5 32 35-67 5-36 (352)
331 TIGR00507 aroE shikimate 5-deh 92.6 0.76 1.7E-05 42.4 9.0 126 36-179 118-248 (270)
332 PRK06932 glycerate dehydrogena 92.6 1 2.2E-05 42.7 10.0 60 35-115 147-206 (314)
333 cd05291 HicDH_like L-2-hydroxy 92.5 0.38 8.3E-06 45.3 7.0 32 37-70 2-34 (306)
334 COG3268 Uncharacterized conser 92.5 1 2.2E-05 43.3 9.6 169 31-214 2-189 (382)
335 PRK10217 dTDP-glucose 4,6-dehy 92.5 0.34 7.3E-06 45.8 6.6 34 35-69 1-34 (355)
336 PRK10669 putative cation:proto 92.4 1.6 3.5E-05 44.5 11.9 126 32-174 414-546 (558)
337 cd01493 APPBP1_RUB Ubiquitin a 92.4 1.5 3.3E-05 43.4 11.2 123 35-166 20-147 (425)
338 PLN02214 cinnamoyl-CoA reducta 92.3 0.95 2.1E-05 42.9 9.5 34 34-68 9-42 (342)
339 PRK13940 glutamyl-tRNA reducta 92.3 0.19 4.1E-06 49.6 4.9 67 36-115 182-251 (414)
340 COG0604 Qor NADPH:quinone redu 92.3 0.61 1.3E-05 44.4 8.2 95 36-138 144-243 (326)
341 PRK06182 short chain dehydroge 92.3 1.9 4.1E-05 39.0 11.2 78 36-140 4-84 (273)
342 cd00704 MDH Malate dehydrogena 92.3 0.56 1.2E-05 44.8 7.8 23 36-58 1-23 (323)
343 TIGR01087 murD UDP-N-acetylmur 92.3 3.1 6.6E-05 40.8 13.3 117 37-167 1-139 (433)
344 TIGR01772 MDH_euk_gproteo mala 92.2 0.64 1.4E-05 44.2 8.1 34 37-70 1-34 (312)
345 PRK08177 short chain dehydroge 92.2 0.84 1.8E-05 40.1 8.4 80 36-140 2-81 (225)
346 TIGR00518 alaDH alanine dehydr 92.2 0.5 1.1E-05 45.9 7.5 45 23-70 155-199 (370)
347 TIGR02197 heptose_epim ADP-L-g 92.1 0.87 1.9E-05 41.9 8.7 30 38-69 1-31 (314)
348 PF01370 Epimerase: NAD depend 92.0 0.69 1.5E-05 40.4 7.7 31 38-69 1-31 (236)
349 PF02254 TrkA_N: TrkA-N domain 92.0 2.3 4.9E-05 33.4 10.0 109 38-163 1-116 (116)
350 PLN02602 lactate dehydrogenase 92.0 0.59 1.3E-05 45.2 7.6 34 36-70 38-71 (350)
351 cd01489 Uba2_SUMO Ubiquitin ac 91.9 0.86 1.9E-05 43.4 8.5 31 37-69 1-31 (312)
352 TIGR01777 yfcH conserved hypot 91.8 1 2.2E-05 40.8 8.7 30 38-68 1-30 (292)
353 PRK10675 UDP-galactose-4-epime 91.7 1 2.2E-05 42.0 8.9 30 36-66 1-30 (338)
354 COG1004 Ugd Predicted UDP-gluc 91.7 2.1 4.5E-05 42.1 11.0 121 36-165 1-151 (414)
355 PRK03659 glutathione-regulated 91.7 2.5 5.4E-05 43.7 12.3 123 35-172 400-527 (601)
356 PRK13581 D-3-phosphoglycerate 91.7 0.95 2.1E-05 46.0 9.1 64 35-115 140-203 (526)
357 cd01338 MDH_choloroplast_like 91.7 0.69 1.5E-05 44.1 7.7 23 35-57 2-24 (322)
358 KOG2733 Uncharacterized membra 91.6 0.4 8.7E-06 46.4 5.9 154 35-204 5-185 (423)
359 COG1087 GalE UDP-glucose 4-epi 91.6 0.97 2.1E-05 42.9 8.3 146 36-212 1-154 (329)
360 PRK06180 short chain dehydroge 91.6 1.3 2.8E-05 40.4 9.2 82 35-140 4-88 (277)
361 PRK15409 bifunctional glyoxyla 91.5 0.62 1.3E-05 44.4 7.2 64 35-114 145-208 (323)
362 TIGR02440 FadJ fatty oxidation 91.5 0.95 2.1E-05 47.7 9.2 33 35-69 304-336 (699)
363 PRK05653 fabG 3-ketoacyl-(acyl 91.5 2.1 4.7E-05 37.3 10.3 33 36-70 6-38 (246)
364 cd05292 LDH_2 A subgroup of L- 91.5 1.1 2.3E-05 42.4 8.7 34 36-70 1-34 (308)
365 PRK06487 glycerate dehydrogena 91.4 0.67 1.4E-05 44.0 7.2 59 35-115 148-206 (317)
366 PF02844 GARS_N: Phosphoribosy 91.3 2.3 5E-05 33.8 9.1 90 36-160 1-90 (100)
367 cd01486 Apg7 Apg7 is an E1-lik 91.3 1.3 2.7E-05 42.1 8.9 30 37-68 1-30 (307)
368 PLN02494 adenosylhomocysteinas 91.3 1.3 2.8E-05 44.5 9.4 99 35-151 254-355 (477)
369 KOG0069 Glyoxylate/hydroxypyru 91.2 2.2 4.8E-05 41.0 10.6 105 35-157 162-272 (336)
370 PRK03562 glutathione-regulated 91.2 2.9 6.2E-05 43.5 12.2 118 35-169 400-524 (621)
371 KOG2017 Molybdopterin synthase 91.0 0.45 9.8E-06 45.8 5.6 97 36-140 67-192 (427)
372 PRK08340 glucose-1-dehydrogena 91.0 1.1 2.5E-05 40.2 8.1 83 36-140 1-86 (259)
373 PRK03803 murD UDP-N-acetylmura 90.9 7.9 0.00017 38.2 14.6 120 36-168 7-146 (448)
374 TIGR01759 MalateDH-SF1 malate 90.9 1 2.3E-05 42.9 8.1 25 35-59 3-27 (323)
375 PRK09135 pteridine reductase; 90.9 10 0.00022 33.1 14.4 172 36-252 7-192 (249)
376 COG0334 GdhA Glutamate dehydro 90.9 1.3 2.9E-05 43.5 8.8 135 35-186 207-360 (411)
377 PLN02725 GDP-4-keto-6-deoxyman 90.8 0.76 1.6E-05 42.1 6.9 56 40-114 2-57 (306)
378 PRK06199 ornithine cyclodeamin 90.8 0.55 1.2E-05 45.8 6.1 93 36-137 156-260 (379)
379 PRK15469 ghrA bifunctional gly 90.7 1.2 2.5E-05 42.3 8.2 62 36-114 137-198 (312)
380 PRK05565 fabG 3-ketoacyl-(acyl 90.7 2.2 4.8E-05 37.4 9.6 86 35-140 5-93 (247)
381 cd05311 NAD_bind_2_malic_enz N 90.7 1.6 3.4E-05 39.5 8.6 87 36-135 26-125 (226)
382 PRK08267 short chain dehydroge 90.6 1.7 3.8E-05 38.8 9.0 83 35-140 1-87 (260)
383 TIGR02622 CDP_4_6_dhtase CDP-g 90.5 1.7 3.7E-05 41.1 9.2 30 36-66 5-34 (349)
384 PRK08017 oxidoreductase; Provi 90.5 4.3 9.4E-05 36.0 11.4 31 35-66 2-32 (256)
385 COG0771 MurD UDP-N-acetylmuram 90.5 4.2 9.1E-05 40.7 12.2 140 35-192 7-167 (448)
386 PRK12549 shikimate 5-dehydroge 90.5 0.43 9.4E-06 44.6 5.0 124 36-179 128-261 (284)
387 PRK05442 malate dehydrogenase; 90.5 1.1 2.4E-05 42.9 7.8 23 35-57 4-26 (326)
388 TIGR02825 B4_12hDH leukotriene 90.5 2.2 4.8E-05 39.7 9.8 32 36-68 140-171 (325)
389 TIGR01381 E1_like_apg7 E1-like 90.5 1.1 2.4E-05 46.6 8.3 32 35-68 338-369 (664)
390 PRK06823 ornithine cyclodeamin 90.4 0.62 1.4E-05 44.3 6.1 91 36-137 129-223 (315)
391 PRK07904 short chain dehydroge 90.4 2.7 5.8E-05 37.9 10.0 88 35-140 8-97 (253)
392 PTZ00075 Adenosylhomocysteinas 90.4 1.6 3.6E-05 43.8 9.1 64 35-114 254-317 (476)
393 PRK01710 murD UDP-N-acetylmura 90.4 1.2 2.5E-05 44.4 8.2 138 36-191 15-173 (458)
394 PLN02928 oxidoreductase family 90.3 0.83 1.8E-05 44.0 6.9 68 35-114 159-234 (347)
395 PRK10538 malonic semialdehyde 90.3 3.7 8E-05 36.5 10.8 81 36-140 1-84 (248)
396 TIGR01179 galE UDP-glucose-4-e 90.3 1.7 3.6E-05 39.9 8.7 29 37-66 1-29 (328)
397 cd00650 LDH_MDH_like NAD-depen 90.3 0.76 1.6E-05 42.2 6.4 69 38-113 1-77 (263)
398 PRK09134 short chain dehydroge 90.3 5.2 0.00011 35.7 11.8 86 35-140 9-97 (258)
399 COG0677 WecC UDP-N-acetyl-D-ma 90.3 1.6 3.5E-05 42.8 8.7 129 34-172 8-170 (436)
400 PRK06718 precorrin-2 dehydroge 90.3 2.7 5.9E-05 37.2 9.7 88 36-136 11-100 (202)
401 TIGR01202 bchC 2-desacetyl-2-h 90.1 2.4 5.2E-05 39.5 9.7 124 37-181 147-271 (308)
402 PLN02260 probable rhamnose bio 90.1 2.4 5.3E-05 44.0 10.6 32 35-66 6-38 (668)
403 KOG4354 N-acetyl-gamma-glutamy 90.1 0.9 2E-05 41.9 6.4 128 35-170 19-164 (340)
404 PRK15076 alpha-galactosidase; 90.0 5.7 0.00012 39.5 12.7 156 35-211 1-184 (431)
405 PRK12825 fabG 3-ketoacyl-(acyl 89.9 2.4 5.3E-05 37.0 9.2 85 35-139 6-93 (249)
406 PRK08410 2-hydroxyacid dehydro 89.9 1.1 2.3E-05 42.6 7.1 60 35-114 145-204 (311)
407 PRK12938 acetyacetyl-CoA reduc 89.9 4 8.6E-05 36.0 10.6 82 37-140 5-91 (246)
408 PF02423 OCD_Mu_crystall: Orni 89.9 0.46 9.9E-06 45.0 4.7 91 36-137 129-225 (313)
409 PRK12384 sorbitol-6-phosphate 89.9 14 0.0003 32.9 15.4 175 35-252 2-191 (259)
410 PRK06179 short chain dehydroge 89.8 5.4 0.00012 35.9 11.5 76 36-140 5-83 (270)
411 PRK00257 erythronate-4-phospha 89.8 2.1 4.6E-05 41.8 9.3 59 36-114 117-175 (381)
412 KOG1014 17 beta-hydroxysteroid 89.8 1 2.2E-05 42.7 6.8 82 38-141 52-137 (312)
413 PRK06953 short chain dehydroge 89.7 1.8 4E-05 37.8 8.2 79 35-140 1-80 (222)
414 PLN02650 dihydroflavonol-4-red 89.7 1.2 2.7E-05 42.0 7.5 33 35-68 5-37 (351)
415 PRK02705 murD UDP-N-acetylmura 89.7 6.7 0.00014 38.7 12.9 31 37-70 2-32 (459)
416 PRK00683 murD UDP-N-acetylmura 89.7 1.1 2.5E-05 43.8 7.4 133 36-191 4-155 (418)
417 PLN02662 cinnamyl-alcohol dehy 89.6 1.3 2.7E-05 41.0 7.4 32 36-68 5-36 (322)
418 PRK11790 D-3-phosphoglycerate 89.6 2.6 5.6E-05 41.5 9.8 61 35-114 151-211 (409)
419 PRK07454 short chain dehydroge 89.5 5.6 0.00012 35.0 11.2 85 35-140 6-93 (241)
420 PRK00066 ldh L-lactate dehydro 89.5 1.1 2.4E-05 42.6 6.9 34 36-70 7-40 (315)
421 TIGR01472 gmd GDP-mannose 4,6- 89.4 2 4.4E-05 40.4 8.7 30 37-67 2-31 (343)
422 cd08295 double_bond_reductase_ 89.4 1.1 2.5E-05 41.9 7.0 95 36-138 153-253 (338)
423 PRK06153 hypothetical protein; 89.4 3.3 7.1E-05 40.7 10.1 113 36-161 177-296 (393)
424 COG3010 NanE Putative N-acetyl 89.2 3.3 7.2E-05 37.2 9.2 99 51-168 57-192 (229)
425 PLN00198 anthocyanidin reducta 89.2 1.4 3.1E-05 41.3 7.5 36 30-67 5-40 (338)
426 cd05290 LDH_3 A subgroup of L- 89.2 0.93 2E-05 42.9 6.2 32 37-69 1-32 (307)
427 COG2130 Putative NADP-dependen 89.2 1.7 3.6E-05 41.4 7.6 77 37-140 153-229 (340)
428 PRK12464 1-deoxy-D-xylulose 5- 89.1 2.9 6.3E-05 40.9 9.6 94 40-137 1-117 (383)
429 PF13727 CoA_binding_3: CoA-bi 89.0 4.7 0.0001 33.5 9.9 32 38-70 80-113 (175)
430 PRK11730 fadB multifunctional 89.0 2.4 5.2E-05 44.8 9.7 32 35-69 313-344 (715)
431 COG0039 Mdh Malate/lactate deh 88.9 1.4 3.1E-05 42.0 7.1 33 36-70 1-34 (313)
432 KOG1203 Predicted dehydrogenas 88.9 2.5 5.3E-05 41.8 9.0 33 35-68 79-111 (411)
433 TIGR00514 accC acetyl-CoA carb 88.9 3.3 7.1E-05 41.0 10.1 123 34-160 1-131 (449)
434 TIGR01763 MalateDH_bact malate 88.9 3.8 8.3E-05 38.6 10.1 32 36-69 2-33 (305)
435 PRK06407 ornithine cyclodeamin 88.8 1 2.2E-05 42.6 6.1 91 36-137 118-213 (301)
436 PRK11154 fadJ multifunctional 88.8 1.9 4.1E-05 45.5 8.7 33 35-69 309-341 (708)
437 PRK07825 short chain dehydroge 88.8 3.9 8.4E-05 36.9 9.8 80 36-140 6-88 (273)
438 PRK10084 dTDP-glucose 4,6 dehy 88.7 0.96 2.1E-05 42.6 6.0 32 36-68 1-32 (352)
439 COG2423 Predicted ornithine cy 88.7 1.1 2.3E-05 43.1 6.2 89 36-134 131-222 (330)
440 PRK09880 L-idonate 5-dehydroge 88.7 6.7 0.00014 36.9 11.7 90 37-138 172-268 (343)
441 cd05294 LDH-like_MDH_nadp A la 88.6 2.6 5.7E-05 39.8 8.8 33 36-69 1-34 (309)
442 PRK00885 phosphoribosylamine-- 88.5 2 4.4E-05 42.0 8.3 89 36-134 1-90 (420)
443 TIGR03589 PseB UDP-N-acetylglu 88.5 3.2 6.9E-05 39.0 9.3 33 36-69 5-38 (324)
444 PLN02986 cinnamyl-alcohol dehy 88.4 1.9 4E-05 40.2 7.6 33 36-69 6-38 (322)
445 PRK12743 oxidoreductase; Provi 88.4 4.3 9.3E-05 36.3 9.8 86 35-140 2-90 (256)
446 PRK07326 short chain dehydroge 88.4 2.9 6.3E-05 36.6 8.5 82 36-139 7-91 (237)
447 PLN03154 putative allyl alcoho 88.4 4.2 9.1E-05 38.6 10.1 95 36-138 160-260 (348)
448 PRK07024 short chain dehydroge 88.3 2.9 6.2E-05 37.5 8.6 85 34-140 1-88 (257)
449 TIGR01142 purT phosphoribosylg 88.2 1.4 3E-05 42.2 6.8 30 37-69 1-30 (380)
450 PLN02896 cinnamyl-alcohol dehy 88.2 2.1 4.6E-05 40.5 8.0 33 35-68 10-42 (353)
451 COG1063 Tdh Threonine dehydrog 88.0 5 0.00011 38.4 10.4 147 37-195 171-325 (350)
452 COG2403 Predicted GTPase [Gene 87.9 2.3 5E-05 41.5 7.8 96 35-134 6-113 (449)
453 PRK09186 flagellin modificatio 87.9 3.7 8E-05 36.4 8.9 30 36-66 5-34 (256)
454 PLN02989 cinnamyl-alcohol dehy 87.8 2.4 5.2E-05 39.4 8.0 32 35-67 5-36 (325)
455 PRK05786 fabG 3-ketoacyl-(acyl 87.8 3.8 8.2E-05 35.9 8.9 82 36-139 6-90 (238)
456 PRK06719 precorrin-2 dehydroge 87.7 3.8 8.3E-05 34.8 8.5 83 36-133 14-97 (157)
457 PRK12745 3-ketoacyl-(acyl-carr 87.7 0.88 1.9E-05 40.5 4.8 86 35-140 2-90 (256)
458 PF08484 Methyltransf_14: C-me 87.7 1.3 2.8E-05 38.0 5.6 87 36-135 69-157 (160)
459 PRK12557 H(2)-dependent methyl 87.5 7.8 0.00017 37.3 11.4 92 48-151 32-130 (342)
460 KOG1198 Zinc-binding oxidoredu 87.4 3.9 8.4E-05 39.5 9.3 30 35-65 158-188 (347)
461 PLN00112 malate dehydrogenase 87.4 1.2 2.6E-05 44.4 5.9 24 35-58 100-123 (444)
462 PRK05586 biotin carboxylase; V 87.4 3.8 8.3E-05 40.5 9.5 34 34-69 1-34 (447)
463 cd08230 glucose_DH Glucose deh 87.2 2.3 5E-05 40.2 7.5 93 36-138 174-271 (355)
464 PRK00421 murC UDP-N-acetylmura 87.2 4.7 0.0001 40.0 10.1 85 35-134 7-94 (461)
465 TIGR00877 purD phosphoribosyla 87.2 2.3 4.9E-05 41.6 7.7 91 36-134 1-92 (423)
466 PRK12939 short chain dehydroge 87.2 6.9 0.00015 34.4 10.2 84 36-140 8-94 (250)
467 PRK06463 fabG 3-ketoacyl-(acyl 87.2 5 0.00011 35.8 9.4 79 36-140 8-89 (255)
468 PRK13789 phosphoribosylamine-- 87.1 4.5 9.7E-05 40.0 9.8 117 34-159 3-123 (426)
469 PRK07109 short chain dehydroge 87.0 5.5 0.00012 37.7 10.0 83 36-139 9-94 (334)
470 PRK06139 short chain dehydroge 86.9 4.9 0.00011 38.1 9.6 81 36-139 8-93 (330)
471 PF11017 DUF2855: Protein of u 86.9 3.9 8.5E-05 39.0 8.8 98 36-142 137-237 (314)
472 COG1893 ApbA Ketopantoate redu 86.9 5.2 0.00011 37.9 9.7 108 36-155 1-117 (307)
473 PLN03209 translocon at the inn 86.8 2 4.3E-05 44.3 7.2 32 36-68 81-112 (576)
474 cd05297 GH4_alpha_glucosidase_ 86.8 11 0.00025 37.1 12.4 159 36-211 1-182 (423)
475 PRK08219 short chain dehydroge 86.7 0.92 2E-05 39.4 4.3 30 35-66 3-32 (227)
476 KOG0023 Alcohol dehydrogenase, 86.7 5.4 0.00012 38.3 9.5 94 36-159 183-276 (360)
477 TIGR01809 Shik-DH-AROM shikima 86.7 0.95 2.1E-05 42.2 4.5 33 36-70 126-158 (282)
478 TIGR01757 Malate-DH_plant mala 86.6 1.4 3.1E-05 43.1 5.8 24 35-58 44-67 (387)
479 PRK05872 short chain dehydroge 86.6 8.4 0.00018 35.5 10.9 81 36-140 10-95 (296)
480 PRK08642 fabG 3-ketoacyl-(acyl 86.5 4.1 8.9E-05 36.0 8.4 32 36-68 6-37 (253)
481 PRK06483 dihydromonapterin red 86.4 9.2 0.0002 33.6 10.6 80 34-139 1-83 (236)
482 PRK07806 short chain dehydroge 86.4 8.3 0.00018 34.0 10.3 85 36-140 7-94 (248)
483 cd08293 PTGR2 Prostaglandin re 86.4 2.1 4.6E-05 39.9 6.8 97 36-137 156-255 (345)
484 cd00300 LDH_like L-lactate deh 86.3 1.9 4E-05 40.6 6.3 32 38-70 1-32 (300)
485 cd01488 Uba3_RUB Ubiquitin act 86.3 3.6 7.8E-05 38.8 8.2 31 37-69 1-31 (291)
486 PRK05225 ketol-acid reductoiso 86.3 1.5 3.2E-05 44.0 5.8 152 35-212 36-195 (487)
487 PF02558 ApbA: Ketopantoate re 86.3 2.8 6.2E-05 34.5 6.8 29 38-68 1-29 (151)
488 TIGR01470 cysG_Nterm siroheme 86.2 6.7 0.00015 34.9 9.5 87 36-135 10-99 (205)
489 PRK12742 oxidoreductase; Provi 86.1 2 4.3E-05 37.7 6.1 30 36-66 7-36 (237)
490 PRK07589 ornithine cyclodeamin 86.0 2.1 4.6E-05 41.3 6.6 93 36-137 130-226 (346)
491 PRK07023 short chain dehydroge 85.9 1.1 2.4E-05 39.7 4.4 31 35-66 1-31 (243)
492 PRK07478 short chain dehydroge 85.9 6.2 0.00013 35.1 9.3 84 36-140 7-93 (254)
493 PRK05557 fabG 3-ketoacyl-(acyl 85.9 8.7 0.00019 33.5 10.1 85 36-140 6-93 (248)
494 TIGR01408 Ube1 ubiquitin-activ 85.8 3.5 7.7E-05 45.3 8.9 96 37-140 421-554 (1008)
495 PLN02306 hydroxypyruvate reduc 85.8 2.4 5.3E-05 41.5 7.0 71 35-114 165-244 (386)
496 PRK07578 short chain dehydroge 85.7 4.9 0.00011 34.4 8.3 28 36-65 1-28 (199)
497 PRK00994 F420-dependent methyl 85.7 5.7 0.00012 36.4 8.7 113 34-169 1-123 (277)
498 PF00670 AdoHcyase_NAD: S-aden 85.6 2.4 5.1E-05 36.6 6.0 97 36-151 24-124 (162)
499 PRK08416 7-alpha-hydroxysteroi 85.6 3 6.5E-05 37.5 7.1 85 36-139 9-96 (260)
500 PRK09496 trkA potassium transp 85.6 15 0.00032 35.9 12.6 124 34-171 230-358 (453)
No 1
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-80 Score=556.62 Aligned_cols=251 Identities=31% Similarity=0.434 Sum_probs=231.0
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV 110 (300)
|||||+|+||+|||||.+++++.+.|+++|+++++++ ..|.|+++++|. ...++++++|+.... .++||+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~-~~~gv~v~~~~~~~~------~~~DV~ 73 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGL-GLLGVPVTDDLLLVK------ADADVL 73 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccc-cccCceeecchhhcc------cCCCEE
Confidence 4799999999999999999999999999999999964 468899999988 588999999976665 589999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCC--CCeEE
Q 022250 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEI 188 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~--~dieI 188 (300)
||||+|+++.+++++|+++|+++|||||||++++.++|++++++ +|+|+|||||+|+|||+++++++++++ ||+||
T Consensus 74 IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGvnll~~l~~~aak~l~~~DiEI 151 (266)
T COG0289 74 IDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEI 151 (266)
T ss_pred EECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEeccchHHHHHHHHHHHHHHHhcCCCCEEe
Confidence 99999999999999999999999999999999999999999999 999999999999999999998888864 79999
Q ss_pred EEccC-CCCCCCchHHHHHHHHHHhcC-------CccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEEEccCC
Q 022250 189 VESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPG 260 (300)
Q Consensus 189 iE~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~f~~~~ 260 (300)
+|+|| +|+|||||||++|+|.|++.+ ..|+|++.++ .|. +++|+|||+|+|++||+|+|+|+++|
T Consensus 152 iE~HHr~K~DAPSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g---~r~----~~~Igi~svR~G~ivG~H~V~F~~~G 224 (266)
T COG0289 152 IEAHHRHKKDAPSGTALKLAEAIAEARGQDLKDEAVYGREGATG---ARK----EGEIGIHSVRGGDIVGEHEVIFAGEG 224 (266)
T ss_pred hhhhcccCCCCCcHHHHHHHHHHHHhhccccccceeecccCCcC---CCC----CCCceeEEeecCCcceeEEEEEecCC
Confidence 99999 699999999999999999843 2456776543 342 46899999999999999999999999
Q ss_pred cEEEEEEEeCCccccHHHHHHHHHHhhccCCeeeeccccC
Q 022250 261 EVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300 (300)
Q Consensus 261 E~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL 300 (300)
|+|||+|+|+||.+||+||++||+|+.+|+||+|+|+|||
T Consensus 225 E~iei~H~A~sR~~Fa~Gal~aa~wi~~k~~g~Y~m~dvL 264 (266)
T COG0289 225 ERIEIRHRATSRDSFARGALLAARWLVGKPPGLYDMEDVL 264 (266)
T ss_pred cEEEEEEeeccHHHHHHHHHHHHHHHhCCCCCccchHHhh
Confidence 9999999999999999999999999999999999999997
No 2
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=100.00 E-value=1.1e-72 Score=520.70 Aligned_cols=252 Identities=28% Similarity=0.421 Sum_probs=226.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (300)
||||+|+||+|+||+.+++.+.+.++++|++++|+. ..+++++++.+. .+.++++++|++++ . .++||||
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~-~~~gv~~~~d~~~l-~-----~~~DvVI 73 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGI-GKVGVPVTDDLEAV-E-----TDPDVLI 73 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCc-CcCCceeeCCHHHh-c-----CCCCEEE
Confidence 489999997799999999999999999999999942 236677777765 35689999999998 3 4799999
Q ss_pred EcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccC--CCCeEEE
Q 022250 112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH--YKNVEIV 189 (300)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~--~~dieIi 189 (300)
|||+|+.+.++++.|+++|+|+|+|||||++++.++|.++|++++++++++||||+|+|+|+++++.+++. .||+||+
T Consensus 74 dfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~dieI~ 153 (266)
T TIGR00036 74 DFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEII 153 (266)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccCCCEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999988887775 3799999
Q ss_pred EccC-CCCCCCchHHHHHHHHHHhcC-------CccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEEEccCCc
Q 022250 190 ESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGE 261 (300)
Q Consensus 190 E~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~f~~~~E 261 (300)
|+|| +|+|+|||||++|++.|++.+ ..|+|++.. ..|+ +++|+|||+|+|+++|+|||+|++++|
T Consensus 154 E~HH~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~---~~r~----~~~i~i~s~R~g~i~g~h~v~f~~~~e 226 (266)
T TIGR00036 154 ELHHRHKKDAPSGTALKTAEMIAEARGERLKNVAVTEREGLT---GERG----REEIGIHAVRGGDVVGEHTVMFAGDGE 226 (266)
T ss_pred eeccCCCCCCCCHHHHHHHHHHHHhhccccccCccccccCCc---CCCC----CCccceEEEecCCceEEEEEEEcCCCe
Confidence 9999 699999999999999998743 245555433 2453 368999999999999999999999999
Q ss_pred EEEEEEEeCCccccHHHHHHHHHHhhccCCeeeeccccC
Q 022250 262 VYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300 (300)
Q Consensus 262 ~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL 300 (300)
+|||+|+|+||++||+|||+||+||.+|+||+|+|+|||
T Consensus 227 ~i~i~H~a~~R~~fa~Gal~Aa~~l~~~~~g~y~m~dvl 265 (266)
T TIGR00036 227 RLEITHRASSRACFANGAVRAARWLADKEAGVYDMEDVL 265 (266)
T ss_pred EEEEEEEECcHHHhHHHHHHHHHHHcCCCCcEEeHHHhc
Confidence 999999999999999999999999999999999999997
No 3
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=100.00 E-value=1.3e-67 Score=484.61 Aligned_cols=245 Identities=30% Similarity=0.417 Sum_probs=213.3
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
||||+|+|++|+||+.+++.+.+.++++|++++|++.. ..... ...+++.++|++++++ ++|+|||||
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~--~~~~~----~~~~i~~~~dl~~ll~------~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS--PLVGQ----GALGVAITDDLEAVLA------DADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc--ccccc----CCCCccccCCHHHhcc------CCCEEEECC
Confidence 58999999999999999999988899999999997531 11111 2467888999999984 699999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCC--CCeEEEEcc
Q 022250 115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVESR 192 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~H 192 (300)
+|+.+.+++..|+++|+|+|+|||||++++.++|.+++ +++|++++||||+|+|++.++++.+++.+ ||+||+|+|
T Consensus 69 ~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa--~~~~v~~s~n~s~g~~~~~~l~~~aa~~l~~~d~ei~E~H 146 (257)
T PRK00048 69 TPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAA--KKIPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIEAH 146 (257)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh--cCCCEEEECcchHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 99999999999999999999999999999999999966 44999999999999999998888777654 799999999
Q ss_pred C-CCCCCCchHHHHHHHHHHhcC-------CccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEEEccCCcEEE
Q 022250 193 P-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264 (300)
Q Consensus 193 h-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~f~~~~E~ie 264 (300)
| +|+|+|||||++|++.|++.+ ..++|.+ .++.. .+++|+|||+|+|+++|+|||+|++++|+||
T Consensus 147 H~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~------~~~~~-~~~~i~i~s~R~g~~~g~h~v~f~~~~e~i~ 219 (257)
T PRK00048 147 HRHKVDAPSGTALKLAEAIAEARGRDLKEVAVYGREG------ATGAR-VKGEIGIHSVRGGDIVGEHEVIFAGDGERIE 219 (257)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhcccccccceeccCC------ccCCc-CCCCccEEEEEcCCceEEEEEEEecCCcEEE
Confidence 9 699999999999999998743 1233322 12221 1368999999999999999999999999999
Q ss_pred EEEEeCCccccHHHHHHHHHHhhccCCeeeeccccC
Q 022250 265 IKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300 (300)
Q Consensus 265 l~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL 300 (300)
|+|+|.||++||+|||+||+||.+|++|+|+|+|||
T Consensus 220 i~H~a~~R~~fa~Gal~aa~~~~~~~~g~y~~~d~l 255 (257)
T PRK00048 220 IRHDATSRMSFAPGALLAARWLVGKKPGLYGMEDVL 255 (257)
T ss_pred EEEEECcHHhHHHHHHHHHHHHhCCCCcEECHHHhh
Confidence 999999999999999999999999999999999997
No 4
>PLN02775 Probable dihydrodipicolinate reductase
Probab=100.00 E-value=5.5e-67 Score=481.92 Aligned_cols=255 Identities=20% Similarity=0.308 Sum_probs=216.7
Q ss_pred CCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCcCCCCccee--cCHHHHHhcccccCC
Q 022250 30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVM--SDLTMVLGSISQSKA 106 (300)
Q Consensus 30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~-~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~ 106 (300)
+|+++.+||+|+||+||||+++++++.+ ++++||+.+|+...|.+.+ ++.| .+++++ +|+++++.+.+.+ .
T Consensus 6 ~~~~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g----~~v~~~~~~dl~~~l~~~~~~-~ 79 (286)
T PLN02775 6 SPPGSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCG----VEVRLVGPSEREAVLSSVKAE-Y 79 (286)
T ss_pred CCcCCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceecc----ceeeeecCccHHHHHHHhhcc-C
Confidence 4567789999999999999999999998 9999999999876666766 6654 278888 9999999642222 5
Q ss_pred cc-EEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCC--
Q 022250 107 RA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY-- 183 (300)
Q Consensus 107 ~D-VVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~-- 183 (300)
+| |+||||+|+++.+++++|+++|+|+|+|||||+++|++++ ++++++|++|+||||+|+|+|+++++.+++++
T Consensus 80 ~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~---~~~~~i~vv~apNfSiGv~ll~~l~~~aA~~l~~ 156 (286)
T PLN02775 80 PNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKD---VEESGVYAVIAPQMGKQVVAFQAAMEIMAEQFPG 156 (286)
T ss_pred CCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH---HhcCCccEEEECcccHHHHHHHHHHHHHHHhccc
Confidence 89 9999999999999999999999999999999999865544 55567999999999999999999888776543
Q ss_pred ----CCeEEEEccC-CCCCCCchHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEE--EEEcCCCCeeEEEEE
Q 022250 184 ----KNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVH--SMVLPGLPSSTTVYF 256 (300)
Q Consensus 184 ----~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~--s~R~g~ivg~H~V~f 256 (300)
||+||+|+|| +|+|+ ||||++|++.|++++..|+|++....+..+. ..++++|+ ++|+|+ +|||+|
T Consensus 157 ~f~~yDiEIiE~HH~~K~Da-SGTA~~lae~i~~~g~~~~~~~~~~~R~~~~---~~~~igi~~~~lRgg~---~HtV~f 229 (286)
T PLN02775 157 AFSGYTLEVVESHQATKLDT-SGTAKAVISSFRKLGVSFDMDQIELIRDPKQ---QLEGVGVPEEHLNGHA---FHTYRL 229 (286)
T ss_pred ccCCCCEEEEECCCCCCCCC-cHHHHHHHHHHHHhCCcccccccccccCccc---cccccceeeecccCCC---cEEEEE
Confidence 7899999999 69999 9999999999988654555555432111110 12578895 999999 899999
Q ss_pred ccCCcE--EEEEEEeCCccccHHHHHHHHHHhhcc-----CCeeeeccccC
Q 022250 257 SRPGEV--YSIKHDITDVQSLMPGLILAIRKVVHL-----KNLVYGLEKFL 300 (300)
Q Consensus 257 ~~~~E~--iel~H~a~sR~~Fa~Gal~Aa~~l~~~-----~~g~y~m~dvL 300 (300)
.+++|+ |||+|+|+||++||.|||+||+||.+| +||+|+|+|||
T Consensus 230 ~~~~E~~~iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~pGlY~M~DVL 280 (286)
T PLN02775 230 TSPDGTVSFEFQHNVCGRSIYAEGTVDAVLFLAKKIAEGADKRIYNMIDVL 280 (286)
T ss_pred ecCCCeEEEEEEEEeCcHHHHHHHHHHHHHHHhcCcccCCCCCccCHHHHH
Confidence 999999 999999999999999999999999999 48999999987
No 5
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=100.00 E-value=8.6e-67 Score=478.75 Aligned_cols=243 Identities=20% Similarity=0.264 Sum_probs=216.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCcCCCCcce------ecCHHHHHhcccccCCcc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA 108 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~~~~~g~~~~~gv~v------~~dl~~~l~~~~~~~~~D 108 (300)
+||+|+||+||||+++++++.+ ++++||+. +|++..+.|.+++.|. ++++ +++++++++ ..+|
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l~~~~~-----~~~d 70 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARIGEVFA-----KYPE 70 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccHHHHHh-----hcCC
Confidence 5899999999999999999987 89999998 8877677788887753 7888 889999985 4589
Q ss_pred -EEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCC----
Q 022250 109 -VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY---- 183 (300)
Q Consensus 109 -VVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~---- 183 (300)
|+||||+|+++++++++|+++|+|+|+|||||+++++++|.+. .++|++||||||+|+|||+++++.+++++
T Consensus 71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~---~~i~~l~apNfSiGv~ll~~~~~~aA~~~~~~f 147 (275)
T TIGR02130 71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVAD---AKHPAVIAPNMAKQIVAFLAAIEFLAEEFPGAF 147 (275)
T ss_pred EEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHh---cCCCEEEECcccHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999988777554 44999999999999999999888777654
Q ss_pred --CCeEEEEccC-CCCCCCchHHHHHHHHHHhcCCccccCccccccccccccccCC-CeeEEEEEcCCCCe---eEEEEE
Q 022250 184 --KNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGED-GVRVHSMVLPGLPS---STTVYF 256 (300)
Q Consensus 184 --~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~-~i~i~s~R~g~ivg---~H~V~f 256 (300)
||+||+|+|| +|+|+ ||||++|++.+++++..|+|+++.+ .|. ++ +|+|+|+|+ +++| +|||+|
T Consensus 148 ~~ydvEIiE~HH~~K~Da-SGTA~~l~~~i~~~~~~~~~~~~~~---~R~----~~~~igi~siR~-~~vgGh~~Htv~f 218 (275)
T TIGR02130 148 AGYKLEVMESHQASKADA-SGTAKAVIGCFQKLGFDYDMDDIEK---IRD----EKEQIERMGVPE-EHLGGHAFHLYHL 218 (275)
T ss_pred CCCCEEEEEcCCCCCCCC-CHHHHHHHHHHHHhCCccCcccccc---cCC----CCCccceEEecC-cccCCCccEEEEE
Confidence 6999999999 69999 9999999999997666788877653 332 23 899999999 6666 999999
Q ss_pred ccCCcE--EEEEEEeCCccccHHHHHHHHHHhhcc-----CCeeeeccccC
Q 022250 257 SRPGEV--YSIKHDITDVQSLMPGLILAIRKVVHL-----KNLVYGLEKFL 300 (300)
Q Consensus 257 ~~~~E~--iel~H~a~sR~~Fa~Gal~Aa~~l~~~-----~~g~y~m~dvL 300 (300)
.+++|+ |||+|+|+||++||.|||+||+||.+| +||+|+|+|||
T Consensus 219 ~s~~e~i~iel~H~A~sR~~FA~GAl~AA~wL~~k~~~~~~~GlY~m~DvL 269 (275)
T TIGR02130 219 DSADGTVHFEFQHNVCGRKIYAEGTVDAVLFLADKIIAAAEAKIFNMIDVL 269 (275)
T ss_pred ecCCCeEEEEEEEEECcHHHHHHHHHHHHHHHhcccccCCCCCccCHHHHH
Confidence 999999 699999999999999999999999999 88999999986
No 6
>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase. Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....
Probab=100.00 E-value=2.7e-42 Score=286.98 Aligned_cols=127 Identities=27% Similarity=0.325 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhccC---CCCeEEEEccC-CCCCCCchHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEE
Q 022250 168 GSILLQQAAISASFH---YKNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSM 243 (300)
Q Consensus 168 Gv~ll~~~a~~~~~~---~~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~ 243 (300)
|||||+++++.++++ .||+||+|+|| +|+|+|||||++|++.|.+...... . . ..+++.-.+++|+|||+
T Consensus 1 Gv~ll~~l~~~aa~~l~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~-~--~---~~~~~~~~~~~i~v~s~ 74 (132)
T PF05173_consen 1 GVNLLMKLAKQAAKLLPNGYDIEIIESHHRQKKDAPSGTALMLAESIAEARDRDL-S--E---VARGGREQENEIGVHSV 74 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTSEEEEEEEE-TT-SSSS-HHHHHHHHHHHHHTTSEH-H--H---HEEECCGETTCEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEcccCCCCCCCCHHHHHHHHHHHHhcCccc-c--c---cccccccCCccceEEEE
Confidence 899999988887764 38899999999 6999999999999999988542100 0 0 00111002489999999
Q ss_pred EcCCCCeeEEEEEccCCcEEEEEEEeCCccccHHHHHHHHHHhhc-cCCeeeeccccC
Q 022250 244 VLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVH-LKNLVYGLEKFL 300 (300)
Q Consensus 244 R~g~ivg~H~V~f~~~~E~iel~H~a~sR~~Fa~Gal~Aa~~l~~-~~~g~y~m~dvL 300 (300)
|+|+++|+|+|+|.+++|+|||+|+|+||++||.|||+||+||.+ +++|+|+|+|||
T Consensus 75 R~g~i~G~H~V~f~~~~E~i~l~H~a~sR~~Fa~Gal~Aa~~l~~~~~~G~y~m~dvL 132 (132)
T PF05173_consen 75 RGGGIVGEHEVIFGSPGETIELTHRAHSRSIFAEGALRAARWLAGKKKPGLYSMDDVL 132 (132)
T ss_dssp E-TT--EEEEEEEEETTEEEEEEEEESSTHHHHHHHHHHHHHHTTSSSSEEE-HHHHC
T ss_pred EcCCCCEEEEEEEcCCCcEEEEEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEehHHhC
Confidence 999999999999999999999999999999999999999999999 559999999997
No 7
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.97 E-value=3.3e-31 Score=218.13 Aligned_cols=121 Identities=36% Similarity=0.604 Sum_probs=108.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
|||+|+|++||||+.+++.+.++++++|+++++++. .|+|+++++|.. +.++++++|++++++ .+||+||
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~------~~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLE------EADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTT------H-SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcc------cCCEEEE
Confidence 799999999999999999999999999999999754 799999999985 899999999999995 5999999
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~ 165 (300)
||+|+++.+++++|+++|+|+|+|||||+++|.++|++++++ +|++|||||
T Consensus 74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vl~a~Nf 124 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK--IPVLIAPNF 124 (124)
T ss_dssp ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT--SEEEE-SSS
T ss_pred cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEeCCC
Confidence 999999999999999999999999999999999999999998 999999998
No 8
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=99.70 E-value=3.5e-15 Score=137.86 Aligned_cols=132 Identities=15% Similarity=0.135 Sum_probs=104.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
||||+|+|| |+||+.+++.+.+.++++|++++++........... ..++++++|++++ + .++|+||+||
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~-----~~~DvVve~t 69 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----GEAVRVVSSVDAL-P-----QRPDLVVECA 69 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----ccCCeeeCCHHHh-c-----cCCCEEEECC
Confidence 589999999 999999999999889999999997542111112211 1267889999988 5 5899999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEeCCC-CC-HHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHH
Q 022250 115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTTG-~~-~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~ 178 (300)
++..+.+++..++++|+|+|+++++ ++ .+..++|.++|+++|..+++ ++..+|..-+.+.++.
T Consensus 70 ~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~sga~gg~d~l~~~~~ 134 (265)
T PRK13303 70 GHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHL-LSGAIGGIDALAAAKE 134 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eChHhhCHHHHHHHHh
Confidence 9999999999999999999999997 65 44468899999999987666 6666676544444433
No 9
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.70 E-value=2.3e-16 Score=127.33 Aligned_cols=116 Identities=27% Similarity=0.338 Sum_probs=101.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
|||+|+|+ |.+|+.+.+.+.+. +++++++++|++. ..+..+. ..++++.|+|++++++. .++|+|+.+|
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~I~t 70 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDP--ERAEAFA---EKYGIPVYTDLEELLAD----EDVDAVIIAT 70 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTSEEESSHHHHHHH----TTESEEEEES
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCH--HHHHHHH---HHhcccchhHHHHHHHh----hcCCEEEEec
Confidence 69999998 99999999888877 8999999999753 2233332 46788899999999973 6899999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEE
Q 022250 115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI 161 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~ 161 (300)
++..+.+.+..|+++|+||++++| +.+.++.++|.++++++++.+.+
T Consensus 71 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 71 PPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp SGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred CCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 999999999999999999999999 78999999999999999988654
No 10
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.65 E-value=2.2e-14 Score=132.52 Aligned_cols=228 Identities=14% Similarity=0.127 Sum_probs=148.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
||||+|+|+ |+||+.+++.+.+.+ ++++++++|++. ..+..+. ..++++.++|+++++. ++|+|+++
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~--~~a~~~a---~~~~~~~~~~~~ell~------~~DvVvi~ 68 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNL--EKAENLA---SKTGAKACLSIDELVE------DVDLVVEC 68 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCH--HHHHHHH---HhcCCeeECCHHHHhc------CCCEEEEc
Confidence 479999998 999999999998764 899999999753 2233333 3456788999999983 79999999
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeCCC-C-CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEc
Q 022250 114 TDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES 191 (300)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTTG-~-~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~ 191 (300)
++|+.+.+++..++++|+++++.++| + +++..++|.++|+++|+.+++.+..-.|...+. .+ .+. ..+.+.+.-.
T Consensus 69 a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i~-a~-~~G-~i~~V~~~~~ 145 (265)
T PRK13304 69 ASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGIK-AA-SLG-EIKSVTLTTR 145 (265)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHHH-HH-hcC-CccEEEEEEe
Confidence 99999999999999999999999886 3 677788999999999988877554444443332 11 222 2345555444
Q ss_pred -cCC-CCCC-------------C----chHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCe-e
Q 022250 192 -RPN-ARDF-------------P----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS-S 251 (300)
Q Consensus 192 -Hh~-K~Da-------------P----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg-~ 251 (300)
|.. -+++ | +|||. |++..++++.+..-.. ..+.. +...+.+-+. |++.+ .
T Consensus 146 k~p~~~~~~~~~~~~~~~~~~~~~~~f~G~a~---ea~~~fP~n~Nva~a~--ala~~---~~~~v~l~ad--p~~~~n~ 215 (265)
T PRK13304 146 KPPKGLEGALKELGIDLEEIKEPKVLFEGKAF---EAVKKFPANINVAATL--SLASI---YPAKVKIIAD--PNLDRNV 215 (265)
T ss_pred cChHHhCcChhhcCCCccccccceEEEEecHH---HHHHHCCCchhHHHHH--HHhcC---CCceEEEEEC--CCCCCce
Confidence 321 1122 2 67777 4444443322211000 01110 1233444443 44444 7
Q ss_pred EEEEEccCCcEEEEEEEe----CC-ccccHHHHHHHHHHhhc
Q 022250 252 TTVYFSRPGEVYSIKHDI----TD-VQSLMPGLILAIRKVVH 288 (300)
Q Consensus 252 H~V~f~~~~E~iel~H~a----~s-R~~Fa~Gal~Aa~~l~~ 288 (300)
|+|...|++-+++++=+- .| |++ +--|+.+++-|.+
T Consensus 216 h~i~~~g~~g~~~~~~~~~p~~~np~ts-~laa~s~~~~~~~ 256 (265)
T PRK13304 216 HEITVKGSFGTFKTRVENVPCPDNPKTS-ALAAYSAIRLLKD 256 (265)
T ss_pred EEEEEEecceEEEEEEECCcCCCCCchH-HHHHHHHHHHHHh
Confidence 999999999998888444 12 444 4445555554443
No 11
>PRK11579 putative oxidoreductase; Provisional
Probab=99.60 E-value=2.3e-14 Score=136.66 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=114.2
Q ss_pred cceEEEEcCCchHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
++||+|+|+ |.||+ .++..+...++++|++++|++. ..+.. ...++++|+|++++++ +.++|+|+.+
T Consensus 4 ~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~ell~----~~~vD~V~I~ 71 (346)
T PRK11579 4 KIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDA--TKVKA-----DWPTVTVVSEPQHLFN----DPNIDLIVIP 71 (346)
T ss_pred cceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCH--HHHHh-----hCCCCceeCCHHHHhc----CCCCCEEEEc
Confidence 699999998 99998 5788888889999999999753 11111 1124678999999997 3679999999
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEEEE
Q 022250 114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVE 190 (300)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieIiE 190 (300)
|++..+.+++..|+++||||+|++| ..+.++.++|.++|+++++.+.+..| |.....-++++.+. +..-++..++
T Consensus 72 tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~~~ 149 (346)
T PRK11579 72 TPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAE--GVLGEVAYFE 149 (346)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhc--CCCCCeEEEE
Confidence 9999999999999999999999999 78999999999999999988877666 56666666666542 2234555555
Q ss_pred cc
Q 022250 191 SR 192 (300)
Q Consensus 191 ~H 192 (300)
.|
T Consensus 150 ~~ 151 (346)
T PRK11579 150 SH 151 (346)
T ss_pred EE
Confidence 54
No 12
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.59 E-value=2.9e-13 Score=125.54 Aligned_cols=227 Identities=15% Similarity=0.182 Sum_probs=145.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCcCCCCc-ceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
++||+|+|+ |+||+.+++.+.+ .++++|++++|++. ..+.+++ ..++. +.++|++++++ ++|+|++
T Consensus 6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~--~~a~~~a---~~~g~~~~~~~~eell~------~~D~Vvi 73 (271)
T PRK13302 6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDP--QRHADFI---WGLRRPPPVVPLDQLAT------HADIVVE 73 (271)
T ss_pred eeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCH--HHHHHHH---HhcCCCcccCCHHHHhc------CCCEEEE
Confidence 599999998 9999999999987 48999999999753 2223333 24453 56889999984 6899999
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEc-
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES- 191 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~- 191 (300)
+++++.+.+++..++++|+++++.+++- .++.++|.++++++|.++.+.+.|--|...+. .. .+.+ ...+.++=.
T Consensus 74 ~tp~~~h~e~~~~aL~aGk~Vi~~s~ga-l~~~~~L~~~A~~~g~~l~v~sGa~~g~d~l~-~g-~iG~-~~~v~~~trk 149 (271)
T PRK13302 74 AAPASVLRAIVEPVLAAGKKAIVLSVGA-LLRNEDLIDLARQNGGQIIVPTGALLGLDAVT-AA-AEGT-IHSVKMITRK 149 (271)
T ss_pred CCCcHHHHHHHHHHHHcCCcEEEecchh-HHhHHHHHHHHHHcCCEEEEcchHHHhHHHHH-HH-HcCC-ceEEEEEEec
Confidence 9999999999999999999999987662 23567899999999999888776666643321 11 1111 111111111
Q ss_pred cCC-CCCC---------------C----chHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCe-
Q 022250 192 RPN-ARDF---------------P----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS- 250 (300)
Q Consensus 192 Hh~-K~Da---------------P----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg- 250 (300)
+.. -+.. | +|||. |++..++++.+..-...+++ +|.+...|.-+==|++.+
T Consensus 150 pp~~~~g~~~~~~~~~dld~~~~~~~~f~G~a~---ea~~~fP~n~Nvaaa~ala~-----~g~d~t~v~l~adP~~~~n 221 (271)
T PRK13302 150 PPDGLKGAPFLVTNNIDIDGLTEPLLLFEGSAR---EAAKGFPANLNVAVALSLAG-----IGPDRTTLEIWADPGVTRN 221 (271)
T ss_pred CchHhccChhhhhcCCCccccccceEEEEecHH---HHHHHCCcchhHHHHHHHhc-----cCccceEEEEEECCCCCCc
Confidence 110 1111 2 67777 44444443322111111111 112223333333377777
Q ss_pred eEEEEEccCCcEEEEEEEeCC------ccccHHHHHHHHHHhhc
Q 022250 251 STTVYFSRPGEVYSIKHDITD------VQSLMPGLILAIRKVVH 288 (300)
Q Consensus 251 ~H~V~f~~~~E~iel~H~a~s------R~~Fa~Gal~Aa~~l~~ 288 (300)
.|+|..-|++-+++++ ..| |++ +--|+.+++-|.+
T Consensus 222 ~H~i~~~g~~g~~~~~--~~~~p~~npkts-~laa~s~~~~l~~ 262 (271)
T PRK13302 222 VHRIEVDADSARFSMT--IENIPSENPKTG-RITAQSVIALLRK 262 (271)
T ss_pred eEEEEEEeceEEEEEE--EEcCcCCCCchH-HHHHHHHHHHHHh
Confidence 8999999999999988 444 444 4445555554443
No 13
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=99.58 E-value=1.3e-14 Score=136.79 Aligned_cols=148 Identities=20% Similarity=0.188 Sum_probs=113.8
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHhcccccCCccEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVI 111 (300)
+++||+|+|+.|.+++.++..+.+.++ +++++++|++. ..+..++ ..++++ .|+|++++++ +.++|+|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~----~~~iD~V~ 72 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDP--ERAEAFA---EEFGIAKAYTDLEELLA----DPDIDAVY 72 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCH--HHHHHHH---HHcCCCcccCCHHHHhc----CCCCCEEE
Confidence 579999999833556779999988887 79999999764 2333344 467774 8999999997 35689999
Q ss_pred EcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCcH--HHHHHHHHHHHhccCCCCeEE
Q 022250 112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQAAISASFHYKNVEI 188 (300)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~Si--Gv~ll~~~a~~~~~~~~dieI 188 (300)
..|++..|.+++..|+++||||+|++| +.|.++.++|.++|+++++.+.+.-|+-. .+.-++++... ...-++..
T Consensus 73 Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~--g~lG~v~~ 150 (342)
T COG0673 73 IATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDS--GALGEVVS 150 (342)
T ss_pred EcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhc--CCcCceEE
Confidence 999999999999999999999999999 89999999999999999888887766543 33333444332 12345555
Q ss_pred EEcc
Q 022250 189 VESR 192 (300)
Q Consensus 189 iE~H 192 (300)
++.+
T Consensus 151 ~~~~ 154 (342)
T COG0673 151 VQAS 154 (342)
T ss_pred EEEE
Confidence 5543
No 14
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=99.55 E-value=1.3e-12 Score=119.90 Aligned_cols=231 Identities=10% Similarity=0.059 Sum_probs=150.3
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (300)
|.+||+|+|| |.||+.+++.+... ++++|+++.++.. .....+.+ .+++++|+++++. ..+|+||
T Consensus 1 ~~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~-----~~~~~~~l~~ll~-----~~~DlVV 67 (267)
T PRK13301 1 MTHRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAG-----RVALLDGLPGLLA-----WRPDLVV 67 (267)
T ss_pred CceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhc-----cCcccCCHHHHhh-----cCCCEEE
Confidence 5689999999 99999999998754 4599999988653 22223331 2778899999875 5899999
Q ss_pred EcCCchhHHHHHHHHHHcCCCEEEeCCC-C-CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEE
Q 022250 112 DFTDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV 189 (300)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTTG-~-~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIi 189 (300)
++.+++++.++...++++|+++|+.++| | +++..++|.++|++++..+. -|.-.+|.--..+.++... ...+.++
T Consensus 68 E~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~-ipSGAigGlD~l~aa~~~~--~~~v~~~ 144 (267)
T PRK13301 68 EAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIR-VPAGAIAGLDYLQAVAGRD--DAEVVYE 144 (267)
T ss_pred ECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEE-EeChHHHhHHHHHHhhccC--ceEEEEE
Confidence 9999999999999999999999999986 4 45567889999999887754 4778888765555554432 2334432
Q ss_pred Ec-cCC-CCCC-------------C----chHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCe
Q 022250 190 ES-RPN-ARDF-------------P----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS 250 (300)
Q Consensus 190 E~-Hh~-K~Da-------------P----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg 250 (300)
=+ |.. -+.+ | +|||. |++..++++.|..-...+.+- |- +...+.+.+. |++.+
T Consensus 145 t~K~P~sl~g~~~~~~~~l~~~~~~~~~F~G~Ar---eA~~~fP~NvNVaaa~aLAg~-G~--d~t~v~l~aD--P~~~~ 216 (267)
T PRK13301 145 SRKPVAAWRAELPGMGIDPDTLAESRTLFSGPAR---EAALRFPKNLNVAATLALAGI-GM--TRTRVEVVVD--PRARG 216 (267)
T ss_pred EecChhHhccChhhcccccccccCCeEEEEeCHH---HHHHHCCchHHHHHHHHHhcc-Cc--cceEEEEEEC--CCCCC
Confidence 22 431 2222 2 67777 444443332221100001100 10 0123333333 56655
Q ss_pred -eEEEEEccCCcEEEEEEEe----CCccccHHHHHHHHHHhhc
Q 022250 251 -STTVYFSRPGEVYSIKHDI----TDVQSLMPGLILAIRKVVH 288 (300)
Q Consensus 251 -~H~V~f~~~~E~iel~H~a----~sR~~Fa~Gal~Aa~~l~~ 288 (300)
.|+|..-|+.-+++++=+- .|.+.-+--|+.+++-|.+
T Consensus 217 N~H~I~v~g~~g~~~~~~~n~p~~~NPkTS~laa~Svv~~l~~ 259 (267)
T PRK13301 217 NQHRIQVRSPLGEMQIELVNAPSPANPKTSWLVAQSVLATIRR 259 (267)
T ss_pred ceEEEEEEeeeEEEEEEEeCCcCCCCCchHHHHHHHHHHHHHh
Confidence 7999999999999888544 2334434455555555443
No 15
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=99.52 E-value=1.3e-12 Score=123.56 Aligned_cols=133 Identities=16% Similarity=0.121 Sum_probs=103.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
++||+|+|+ |+||+.+++.+.+.|++||+|++|++.. ...+ ...++..+.|.++++ .++|||+.+|
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~-~~~~------~~~~v~~~~d~~e~l------~~iDVViIct 68 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGA-ETLD------TETPVYAVADDEKHL------DDVDVLILCM 68 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcH-HHHh------hcCCccccCCHHHhc------cCCCEEEEcC
Confidence 699999998 9999999999999999999999997531 1111 123444445666665 4799999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEeCCC-C-CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH-HHHhcc
Q 022250 115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA-AISASF 181 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTTG-~-~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~-a~~~~~ 181 (300)
++..+.+.+..++++|+|||+..+- . .++..++|.++|++++.-.+++.-|..|..-+.++ .+.+.+
T Consensus 69 Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp 138 (324)
T TIGR01921 69 GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLP 138 (324)
T ss_pred CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCC
Confidence 9999999999999999999998763 2 25678899999998766678889999998866654 444443
No 16
>PRK10206 putative oxidoreductase; Provisional
Probab=99.52 E-value=1.9e-13 Score=130.57 Aligned_cols=145 Identities=20% Similarity=0.144 Sum_probs=111.9
Q ss_pred cceEEEEcCCchHH-HHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCcCCCC-cceecCHHHHHhcccccCCccEEE
Q 022250 35 NIKVIINGAVKEIG-RAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG-~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~v~~dl~~~l~~~~~~~~~DVVI 111 (300)
|+||+|+|+ |.++ +.++..+.. .++++|++++|++. +..+++ ..++ +++|+|++++++ +.++|+|+
T Consensus 1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~---~~~~~~---~~~~~~~~~~~~~ell~----~~~iD~V~ 69 (344)
T PRK10206 1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHA---KPEEQA---PIYSHIHFTSDLDEVLN----DPDVKLVV 69 (344)
T ss_pred CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCCh---hHHHHH---HhcCCCcccCCHHHHhc----CCCCCEEE
Confidence 589999998 9976 457776654 46899999999753 112222 2343 678999999997 36899999
Q ss_pred EcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEE
Q 022250 112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEI 188 (300)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieI 188 (300)
..|++..+.+++..|+++||||+|++| ..+.++.++|.++|+++++.+.+..| |.....-++++.+. +..-++--
T Consensus 70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~~--g~iG~i~~ 147 (344)
T PRK10206 70 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES--GKLGEIVE 147 (344)
T ss_pred EeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHHc--CCCCCeEE
Confidence 999999999999999999999999999 78899999999999999999888877 55555556666543 22334444
Q ss_pred EEcc
Q 022250 189 VESR 192 (300)
Q Consensus 189 iE~H 192 (300)
++.|
T Consensus 148 i~~~ 151 (344)
T PRK10206 148 VESH 151 (344)
T ss_pred EEEE
Confidence 4543
No 17
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.43 E-value=1.2e-12 Score=125.02 Aligned_cols=142 Identities=14% Similarity=0.140 Sum_probs=105.7
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhc---------CCcEEEEEEecC-----CCCcchhhhhcCcCCCC-ccee-------
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IPVM------- 91 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~g-v~v~------- 91 (300)
|++||+|+|+ |.+|+.+++.+.+. -+++|+++.|+. +.|-+...+.....+.+ +..+
T Consensus 1 ~~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~ 79 (336)
T PRK08374 1 MEVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVY 79 (336)
T ss_pred CeeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhcccccccc
Confidence 5799999998 99999999987652 148899999853 23434333221111111 0011
Q ss_pred -cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250 92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (300)
Q Consensus 92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ 170 (300)
.+++++++ +.++||+||||.++.+.++...++++|+|||++++|.-....++|.++++++++++++++|++.|+-
T Consensus 80 ~~~~~ell~----~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 80 NFSPEEIVE----EIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CCCHHHHHh----cCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 16778874 2579999999999999999999999999999999974334556889999999999999999999998
Q ss_pred HHHHHHHHhc
Q 022250 171 LLQQAAISAS 180 (300)
Q Consensus 171 ll~~~a~~~~ 180 (300)
++.-+-..++
T Consensus 156 ii~~l~~~l~ 165 (336)
T PRK08374 156 IIGLLRENLL 165 (336)
T ss_pred chHHHHhhcc
Confidence 8766554443
No 18
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=99.43 E-value=1.9e-12 Score=123.79 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=103.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
++||+|+|+ +||+.+++.+.+.+ +++|+|++|++. +.+.+++ .++|++.|+|++++++ +.++|+|..-
T Consensus 3 ~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~--erA~~~A---~~~gi~~y~~~eell~----d~Di~~V~ip 71 (343)
T TIGR01761 3 VQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD----DIDIACVVVR 71 (343)
T ss_pred CcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCH--HHHHHHH---HHhCCCccCCHHHHhc----CCCEEEEEeC
Confidence 589999997 68999999998887 899999999754 3334444 4678899999999995 2344444432
Q ss_pred C--CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHH
Q 022250 114 T--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178 (300)
Q Consensus 114 T--~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~ 178 (300)
| ++..+.+.+..|+++||||+|++|=- .+|.++|.++|+++|+.+.+ ..|...+..+.++.+.
T Consensus 72 t~~P~~~H~e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~v-~~f~p~~~~vr~~i~~ 136 (343)
T TIGR01761 72 SAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYLV-NTFYPHLPAVRRFIEY 136 (343)
T ss_pred CCCCCccHHHHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEEE-EecCHHHHHHHHHHHc
Confidence 2 45788999999999999999999933 58899999999999998776 5678887777776544
No 19
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.40 E-value=2.2e-12 Score=123.33 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=104.8
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhhcCcCCCCc-c------eec
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLEI-P------VMS 92 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~-----~~g~d~~~~~g~~~~~gv-~------v~~ 92 (300)
|++||+|+|+ |.||+.+++.+.+.+ +++|++++|++ ..|.+..++.....+.+. . .+.
T Consensus 1 m~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (341)
T PRK06270 1 MEMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEI 79 (341)
T ss_pred CeEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccC
Confidence 5799999998 999999999987653 79999999953 233343332211122221 1 234
Q ss_pred CHHHHHhcccccCCccEEEEcCCchh-----HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250 93 DLTMVLGSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 167 (300)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~Si 167 (300)
|++++++ +.++|||||+|++.. ..+++..|+++|+|||+++.+......++|.++|+++++.+.+-+...-
T Consensus 80 d~~ell~----~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~ 155 (341)
T PRK06270 80 SGLEVIR----SVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGG 155 (341)
T ss_pred CHHHHhh----ccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeee
Confidence 8899886 367999999997644 4889999999999999997766555678899999999999998777777
Q ss_pred HHHHHHHHHHHhc
Q 022250 168 GSILLQQAAISAS 180 (300)
Q Consensus 168 Gv~ll~~~a~~~~ 180 (300)
|.-++..+-+.+.
T Consensus 156 glPii~~l~~~l~ 168 (341)
T PRK06270 156 AMPIINLAKETLA 168 (341)
T ss_pred chhHHHHHHhhcc
Confidence 7766665554443
No 20
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=1.7e-11 Score=115.40 Aligned_cols=148 Identities=16% Similarity=0.074 Sum_probs=117.3
Q ss_pred CCCcceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCC---cceecCHHHHHhcccccCC
Q 022250 32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKA 106 (300)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~ 106 (300)
+++.+|+||+|| |+|++-.++++...| +++++++.|+.. ..+.+++ +..+ .++|.++|+++. +..
T Consensus 3 ~s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~--~~A~~fA---q~~~~~~~k~y~syEeLak----d~~ 72 (351)
T KOG2741|consen 3 DSATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSL--ERAKEFA---QRHNIPNPKAYGSYEELAK----DPE 72 (351)
T ss_pred CCceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccH--HHHHHHH---HhcCCCCCccccCHHHHhc----CCC
Confidence 345699999999 999999999998888 999999999853 4556666 3333 478999999997 477
Q ss_pred ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEc--CCCcHHHHHHHHHHHHhccCC
Q 022250 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIA--PTLSIGSILLQQAAISASFHY 183 (300)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a--~N~SiGv~ll~~~a~~~~~~~ 183 (300)
+|||+.-++...|++.+..++++||||++++| ..+.+|.++|.++|+++|+-++.+ +-|+.-+.-+..+.. .+.+
T Consensus 73 vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~--~~~~ 150 (351)
T KOG2741|consen 73 VDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS--SGVL 150 (351)
T ss_pred cCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHh--cccc
Confidence 89998777888899999999999999999999 899999999999999998765532 344555545555554 3445
Q ss_pred CCeEEEEc
Q 022250 184 KNVEIVES 191 (300)
Q Consensus 184 ~dieIiE~ 191 (300)
-|+.-++.
T Consensus 151 Gdvk~v~~ 158 (351)
T KOG2741|consen 151 GDVKSVEV 158 (351)
T ss_pred ccceEEEE
Confidence 56666665
No 21
>PRK06349 homoserine dehydrogenase; Provisional
Probab=99.30 E-value=1.9e-11 Score=120.21 Aligned_cols=134 Identities=11% Similarity=0.087 Sum_probs=104.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC---------CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK 105 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~ 105 (300)
++||+|+|+ |.||+.+++.+.+++ +++|++++|++.. .... . ...+..+++|++++++ +.
T Consensus 3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~--~~~~-~---~~~~~~~~~d~~~ll~----d~ 71 (426)
T PRK06349 3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE--KDRG-V---DLPGILLTTDPEELVN----DP 71 (426)
T ss_pred eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh--hccC-C---CCcccceeCCHHHHhh----CC
Confidence 599999998 999999998886543 6899999997531 1110 1 1234567899999996 36
Q ss_pred CccEEEEcCCc-hhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250 106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179 (300)
Q Consensus 106 ~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~ 179 (300)
++|+|||.|.+ +.+.++++.|+++|||||+....+..++.++|.++|+++++.+.+-+...-|.-++..+-+.+
T Consensus 72 ~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~l 146 (426)
T PRK06349 72 DIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKALREGL 146 (426)
T ss_pred CCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhhc
Confidence 78999999854 677999999999999999987777778889999999999999998877666665555444333
No 22
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=99.25 E-value=7e-10 Score=100.57 Aligned_cols=185 Identities=16% Similarity=0.162 Sum_probs=123.4
Q ss_pred CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250 60 GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (300)
Q Consensus 60 ~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG 139 (300)
+++|++++|+.. ..+.+++ ..+|+++|+|++++++ .++|+|+++|++..|.+++..++++|+|++|.++|
T Consensus 1 ~~eLvaV~D~~~--e~a~~~a---~~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g 70 (229)
T TIGR03855 1 NFEIAAVYDRNP--KDAKELA---ERCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG 70 (229)
T ss_pred CeEEEEEECCCH--HHHHHHH---HHhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence 478999999753 2333333 3567889999999986 57999999999999999999999999999999996
Q ss_pred -C-CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhc-cCCCCeEEEEc-cC--CCCC--CC----chHHHHHH
Q 022250 140 -I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS-FHYKNVEIVES-RP--NARD--FP----SPDATQIA 207 (300)
Q Consensus 140 -~-~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~-~~~~dieIiE~-Hh--~K~D--aP----SGTA~~l~ 207 (300)
+ +.++.++|.++++++|.++++.+++--|...+ +... .....+.++=. |. .|.+ -| +|||.
T Consensus 71 Alad~e~~~~l~~aA~~~g~~l~i~sGai~g~d~l----~a~~ig~~~~V~i~~~k~p~~~~~~~~~~~~~f~G~a~--- 143 (229)
T TIGR03855 71 ALADRELRERLREVARSSGRKVYIPSGAIGGLDAL----KAASLGRIERVVLTTTKPPASLGRDIKEPTTIFEGSAS--- 143 (229)
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEEChHHHHHHHHH----HhcccCCceEEEEEEecChHHhcCCCCCCEEEEEecHH---
Confidence 5 56788999999999999999987554443333 2221 11234444333 43 2432 23 89998
Q ss_pred HHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCe-eEEEEEccCCcEEEEEEE
Q 022250 208 NNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS-STTVYFSRPGEVYSIKHD 268 (300)
Q Consensus 208 ~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg-~H~V~f~~~~E~iel~H~ 268 (300)
|++..++++.+..-...+ +.|- +..+.+-+. |++.+ .|+|..-|++.+++++=+
T Consensus 144 ea~~~fP~n~Nva~a~al--A~g~---d~~v~i~ad--p~~~~n~h~i~~~g~~g~~~~~~~ 198 (229)
T TIGR03855 144 EAIKLFPANINVAATLSL--AAGF---DAKVEIVAD--PEADRNIHEIFVESDFGEMEIRVE 198 (229)
T ss_pred HHHHHCCchHHHHHHHHH--hcCC---CcEEEEEEc--CCCCCcEEEEEEEeccEEEEEEEe
Confidence 454444433221111111 1121 123333333 45555 799999999999999844
No 23
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=99.23 E-value=1.7e-11 Score=99.25 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=83.1
Q ss_pred cCCchHHHHHHHHHHhcC---CcEEEEEEecCC-CCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCch
Q 022250 42 GAVKEIGRAAVIAVTKAR---GMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117 (300)
Q Consensus 42 Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~-~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~ 117 (300)
|+ |.||+.+++.+.+.+ +++++++++++. ...+.... ..+...+++++++++. .++|+|||+|.++
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~dvvVE~t~~~ 70 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS-----FPDEAFTTDLEELIDD----PDIDVVVECTSSE 70 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH-----HTHSCEESSHHHHHTH----TT-SEEEE-SSCH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh-----cccccccCCHHHHhcC----cCCCEEEECCCch
Confidence 77 999999999998876 899999999761 11111111 1245678899999852 4799999999999
Q ss_pred hHHHHHHHHHHcCCCEEEeCCCC--CHHHHHHHHHHhhhCCCeEEE
Q 022250 118 TVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLI 161 (300)
Q Consensus 118 ~~~~~~~~al~~G~~vVigTTG~--~~e~~~~L~~~a~~~~i~iv~ 161 (300)
...+++..++++|++||+...+. +....++|.++|+++|+.+.|
T Consensus 71 ~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~ 116 (117)
T PF03447_consen 71 AVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIYY 116 (117)
T ss_dssp HHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEe
Confidence 99999999999999999987753 336789999999999988765
No 24
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=99.22 E-value=2e-10 Score=102.65 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=101.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
++|+|+|| |.+|+.+.+.+... -++|++.++|+.. +++.++. ...+.+..++++++++ .+|++|++.
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~--ek~~~~~---~~~~~~~~s~ide~~~------~~DlvVEaA 68 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDE--EKAKELE---ASVGRRCVSDIDELIA------EVDLVVEAA 68 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCH--HHHHHHH---hhcCCCccccHHHHhh------ccceeeeeC
Confidence 58999999 99999999999865 3699999999764 3333333 2233334489999984 899999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEeCCC-CCH-HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHH
Q 022250 115 DASTVYDNVKQATAFGMRSVVYVPH-IQL-ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTTG-~~~-e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a 176 (300)
+|+++.+++..++++|+++++-++| |.+ +-.+++.++|+..+.. ++.|.-.+|..-....+
T Consensus 69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~r-v~~pSGAiGGlD~l~aa 131 (255)
T COG1712 69 SPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGAR-VYLPSGAIGGLDALAAA 131 (255)
T ss_pred CHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcE-EEecCccchhHHHHHHh
Confidence 9999999999999999999999997 554 4567899999988765 66788888875544444
No 25
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=99.17 E-value=7.8e-10 Score=118.19 Aligned_cols=146 Identities=18% Similarity=0.132 Sum_probs=113.3
Q ss_pred eeeEeecCCCC--CcceEEEEcCCchHHHHHHHHHHhcCCcE------------EEEEEecCCCCcchhhhhcCcCCC-C
Q 022250 23 RFISCSTNPPQ--SNIKVIINGAVKEIGRAAVIAVTKARGME------------VAGAIDSHSVGEDIGMVCDMEQPL-E 87 (300)
Q Consensus 23 ~~~~~~~~~~~--~~ikV~V~Ga~GrMG~~i~~~i~~~~~~e------------Lvg~vd~~~~g~d~~~~~g~~~~~-g 87 (300)
-...|.+.... .|.||+|+|| |+||+.+++.+.+.++.+ +|.+.|... .++..++. .+ +
T Consensus 555 ~~~~~~~~~~~~~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~---~~~~ 628 (1042)
T PLN02819 555 QENECNEKAEVTKKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVE---GIEN 628 (1042)
T ss_pred ccccccccccccccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHH---hcCC
Confidence 44556666543 2679999998 999999999999888877 788888653 33333331 12 3
Q ss_pred ---cce-ecCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250 88 ---IPV-MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (300)
Q Consensus 88 ---v~v-~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~ 163 (300)
+.+ +.|.+++.+.+ .++|+||..+++..+.+.++.|+++|+|+|+.+ ++.++..+|.+.|+++|+.++..-
T Consensus 629 ~~~v~lDv~D~e~L~~~v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m~e~ 703 (1042)
T PLN02819 629 AEAVQLDVSDSESLLKYV---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITILCEM 703 (1042)
T ss_pred CceEEeecCCHHHHHHhh---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEEECC
Confidence 344 56777776411 369999999999999999999999999999887 777888999999999999999999
Q ss_pred CCcHHHHH--HHHHHHHh
Q 022250 164 TLSIGSIL--LQQAAISA 179 (300)
Q Consensus 164 N~SiGv~l--l~~~a~~~ 179 (300)
+|..|+.- .+++....
T Consensus 704 GlDPGid~~lA~~~Id~~ 721 (1042)
T PLN02819 704 GLDPGIDHMMAMKMIDDA 721 (1042)
T ss_pred ccCHHHHHHHHHHHHHhh
Confidence 99999985 45666554
No 26
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.14 E-value=2e-10 Score=109.84 Aligned_cols=96 Identities=23% Similarity=0.264 Sum_probs=75.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh---hcCc------------CCCCcceecCHHHHHh
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV---CDME------------QPLEIPVMSDLTMVLG 99 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~---~g~~------------~~~gv~v~~dl~~~l~ 99 (300)
|+||+|+|+ |+|||.+++++.+++++||+++.|... .....+ .|+. ...+++++.++++++.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~--~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKP--DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCCh--HHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 689999999 999999999999999999999998542 100000 0110 1235777888888873
Q ss_pred cccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250 100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (300)
Q Consensus 100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG 139 (300)
++|+|+|||.+..+.+++..++++|+++|+-.+.
T Consensus 78 ------~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 78 ------KADIVVDATPGGVGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred ------cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCCC
Confidence 7999999999999999999999999999986653
No 27
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.10 E-value=6.3e-10 Score=103.89 Aligned_cols=131 Identities=15% Similarity=0.207 Sum_probs=93.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~-~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID 112 (300)
++||+|+|+ |+||+.++..+.+.+++++++++|.+.. ..+ .++ ..+|++. +++++++++ +.++|+|++
T Consensus 1 klrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~e--s~~la~A---~~~Gi~~~~~~~e~ll~----~~dIDaV~i 70 (285)
T TIGR03215 1 KVKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPE--SDGLARA---RELGVKTSAEGVDGLLA----NPDIDIVFD 70 (285)
T ss_pred CcEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcc--cHHHHHH---HHCCCCEEECCHHHHhc----CCCCCEEEE
Confidence 479999997 9999999888887899999999997541 111 222 3577775 468999986 357999999
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeCCCCC----HHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHH
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQ----LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI 177 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTTG~~----~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~ 177 (300)
+|++..|.+++..++++|++|++.|+-+. ..... +++..+..++.++-.+|-+ .+-++.-+.+
T Consensus 71 aTp~~~H~e~a~~al~aGk~VIdekPa~~~plvvp~VN-~~~~~~~~~~~iv~c~~~a-tip~~~al~r 137 (285)
T TIGR03215 71 ATSAKAHARHARLLAELGKIVIDLTPAAIGPYVVPAVN-LDEHLDAPNVNMVTCGGQA-TIPIVAAISR 137 (285)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEECCccccCCccCCCcC-HHHHhcCcCCCEEEcCcHH-HHHHHHHHHH
Confidence 99999999999999999999999998541 11111 3333343446666666655 3334333333
No 28
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.08 E-value=1.5e-09 Score=101.94 Aligned_cols=149 Identities=15% Similarity=0.189 Sum_probs=103.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhccccc---CCccEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQS---KARAVV 110 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~---~~~DVV 110 (300)
++||+|+|+ |++|+.+...+.+.++++|++++|.+.. .+...++ .++|++. +++++++++ . .++|+|
T Consensus 4 klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~e-s~gla~A---~~~Gi~~~~~~ie~LL~----~~~~~dIDiV 74 (302)
T PRK08300 4 KLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPE-SDGLARA---RRLGVATSAEGIDGLLA----MPEFDDIDIV 74 (302)
T ss_pred CCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChh-hHHHHHH---HHcCCCcccCCHHHHHh----CcCCCCCCEE
Confidence 699999996 9999999988888899999999987531 1111222 3578887 589999996 2 468999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCEEEeCCCC---------CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022250 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHI---------QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF 181 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~---------~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~ 181 (300)
+|+|++..+.+++..++++|++++..|+-+ +.+ ++....++.++-.||=+. ..++..+.+
T Consensus 75 f~AT~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~------~~~~~~~~~iia~p~~at-----i~~v~Al~~ 143 (302)
T PRK08300 75 FDATSAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLD------EHLDAPNVNMVTCGGQAT-----IPIVAAVSR 143 (302)
T ss_pred EECCCHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHH------HHhcccCCCEEECccHHH-----HHHHHHhcc
Confidence 999999999999999999999999999855 332 223334567776666443 222333333
Q ss_pred CCCCeEEEEccC--CCCCCCchHHH
Q 022250 182 HYKNVEIVESRP--NARDFPSPDAT 204 (300)
Q Consensus 182 ~~~dieIiE~Hh--~K~DaPSGTA~ 204 (300)
..++++-|... .-+-+..||=.
T Consensus 144 -v~~~~~~eIvat~~s~s~g~gtr~ 167 (302)
T PRK08300 144 -VAPVHYAEIVASIASKSAGPGTRA 167 (302)
T ss_pred -cCcCceeeeeeeehhhccCCcccc
Confidence 23445556543 33334556433
No 29
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=98.99 E-value=1.1e-08 Score=94.01 Aligned_cols=126 Identities=19% Similarity=0.248 Sum_probs=102.2
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VV 110 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~--~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VV 110 (300)
|.|+|.+.|. |..|...++.+.++|+++|||++++ .+.|+|+++++|.. ++||...++++..++ ..+| ++
T Consensus 1 m~~~vvqyGt-G~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~-dlgV~a~~~~~avlA-----tl~~~~~ 73 (350)
T COG3804 1 MSLRVVQYGT-GSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLP-DLGVIATNSIDAVLA-----TLADAVI 73 (350)
T ss_pred CCceeEEecc-chHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCC-CceeEeeccccccee-----cccccee
Confidence 5689999995 9999999999999999999999996 35899999999984 699999999999887 3444 45
Q ss_pred EEcCCchhHHHHHHHHHHcCCCEEEeCC------CCCHHHHHHHHHHhhhCCCeEEEcCCCcHH
Q 022250 111 IDFTDASTVYDNVKQATAFGMRSVVYVP------HIQLETVSALSAFCDKASMGCLIAPTLSIG 168 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTT------G~~~e~~~~L~~~a~~~~i~iv~a~N~SiG 168 (300)
.+--.|+ .+....++.+|+|||+--+ +..+|..+++.++|.++|..-++..-.-.|
T Consensus 74 y~~~~~~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gtGI~pG 135 (350)
T COG3804 74 YAPLLPS--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGTGIGPG 135 (350)
T ss_pred eecccch--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEecccCcc
Confidence 4444553 8888999999999996522 345778888999999999877876665555
No 30
>PRK06392 homoserine dehydrogenase; Provisional
Probab=98.94 E-value=1.3e-08 Score=96.90 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=98.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhc-------CCcEEEEEEecC-----CCCcchhhhhcCcCC--CCcceec--CHHHHHh
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKA-------RGMEVAGAIDSH-----SVGEDIGMVCDMEQP--LEIPVMS--DLTMVLG 99 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~-------~~~eLvg~vd~~-----~~g~d~~~~~g~~~~--~gv~v~~--dl~~~l~ 99 (300)
|||+|+|+ |.+|+.+++.+.+. .+++++++.|+. ..|-|..++.....+ ......+ +++++++
T Consensus 1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 58999998 99999999998764 578999999853 234444333211011 0011112 6777775
Q ss_pred cccccCCccEEEEcCCc-h---hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH
Q 022250 100 SISQSKARAVVIDFTDA-S---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (300)
Q Consensus 100 ~~~~~~~~DVVIDfT~p-~---~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~ 175 (300)
.++||+||+|.. + ...++++.++++|+|||+..-+.-....++|.++|+++++.+.|.++..=|.-++.-+
T Consensus 80 -----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~ 154 (326)
T PRK06392 80 -----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLR 154 (326)
T ss_pred -----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhhh
Confidence 589999999952 1 2578889999999999987766444677899999999999999999888888777644
No 31
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.81 E-value=1.9e-08 Score=95.02 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=88.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCc-----------------CCCCcceecCHHH
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-----------------QPLEIPVMSDLTM 96 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~-----------------~~~gv~v~~dl~~ 96 (300)
++||+++|+ |.||+-++..+...|+++++++-|.+. ..+++-+-+|++ +...+.+++|.+.
T Consensus 17 PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~ 95 (438)
T COG4091 17 PIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAEL 95 (438)
T ss_pred ceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhh
Confidence 599999998 999999999999999999999988532 112222222221 1234567788888
Q ss_pred HHhcccccCCccEEEEcC-CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250 97 VLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 164 (300)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N 164 (300)
++.. ...|||||.| .|+.-.++...|+.||||+|+-.--.+----.-|++.|.+ ..++||..
T Consensus 96 i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~--~GviyS~~ 158 (438)
T COG4091 96 IIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADA--AGVIYSGG 158 (438)
T ss_pred hhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhh--cCeEEecc
Confidence 8874 6789999999 7999999999999999999986432211111346777888 56677543
No 32
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.78 E-value=3.8e-08 Score=94.31 Aligned_cols=102 Identities=19% Similarity=0.105 Sum_probs=74.8
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
||+||+|+|+||.+|+.+++.+.+.|+++|+++.++...++.+.+..+.....-...++++++... .++|+|+.+
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~vD~Vf~a 75 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEIL-----AGADVVFLA 75 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHh-----cCCCEEEEC
Confidence 579999999999999999999999999999999985444444332211000000113445544322 479999999
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250 114 TDASTVYDNVKQATAFGMRSVVYVPHI 140 (300)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTTG~ 140 (300)
+++..+.+.+..++++|++||--+..|
T Consensus 76 lP~~~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 76 LPHGVSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred CCcHHHHHHHHHHHhCCCEEEECCccc
Confidence 999999999999999999999766654
No 33
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=98.74 E-value=1.5e-07 Score=88.95 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=97.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
..||.|.|.||+-|+.|.+...+ -+..+|+.+.+..-|.... ..|+|+|++++++.+. ..+|++|.|.
T Consensus 29 ~t~v~vqGitg~~g~~h~~~~~~-ygt~iv~GV~Pgkgg~~v~-------~~Gvpvy~sv~ea~~~----~~~D~avI~V 96 (317)
T PTZ00187 29 NTKVICQGITGKQGTFHTEQAIE-YGTKMVGGVNPKKAGTTHL-------KHGLPVFATVKEAKKA----TGADASVIYV 96 (317)
T ss_pred CCeEEEecCCChHHHHHHHHHHH-hCCcEEEEECCCCCCceEe-------cCCccccCCHHHHhcc----cCCCEEEEec
Confidence 47999999999999999998875 4889999998765333221 1389999999999852 3499999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhh-hCCCeEEEcCCCcHHHH
Q 022250 115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCD-KASMGCLIAPTLSIGSI 170 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~-~~~i~iv~a~N~SiGv~ 170 (300)
+|..+.+.++.|.++|++.++--| |+.+.+..+++++++ ++++ .++.|| ++|+.
T Consensus 97 Pa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~-rliGPN-c~Gii 152 (317)
T PTZ00187 97 PPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKT-RLIGPN-CPGII 152 (317)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCC-EEECCC-CceEE
Confidence 999999999999999999976655 898766666777764 4665 488999 66753
No 34
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=98.73 E-value=1.9e-07 Score=87.90 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=94.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
.-||.|.|.||+-|+.+.+...+. +..+++.+++..-+ . .-.|+|+|.+++++.+. .++|++|.+.
T Consensus 12 ~~~v~~~gi~~~~~~~~~~~~~~y-gt~~~~gV~p~~~~---~------~i~G~~~y~sv~dlp~~----~~~DlAvI~v 77 (300)
T PLN00125 12 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---T------EHLGLPVFNTVAEAKAE----TKANASVIYV 77 (300)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHh-CCcEEEEECCCCCC---c------eEcCeeccCCHHHHhhc----cCCCEEEEec
Confidence 369999999999999999987765 88999999875211 1 23578999999999741 1379999999
Q ss_pred CchhHHHHHHHHHHcCCCEE-EeCCCCCHHH-HHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250 115 DASTVYDNVKQATAFGMRSV-VYVPHIQLET-VSALSAFCDKASMGCLIAPTLSIGSI 170 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vV-igTTG~~~e~-~~~L~~~a~~~~i~iv~a~N~SiGv~ 170 (300)
+++.+.+.++.|.++|++.+ |-|.||.+.. .+++.++++++++. ++.|| ++|+.
T Consensus 78 Pa~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~gir-viGPN-c~Gii 133 (300)
T PLN00125 78 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTR-LIGPN-CPGII 133 (300)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCE-EECCC-Cceee
Confidence 99999999999999999854 6666997653 45566778988876 77898 66643
No 35
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.73 E-value=1.4e-07 Score=90.46 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=94.7
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhc---------CCcEEEEEEecCC-----CCcchhhhhcCcC-CCCc--ceecCHHH
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHS-----VGEDIGMVCDMEQ-PLEI--PVMSDLTM 96 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~-----~g~d~~~~~g~~~-~~gv--~v~~dl~~ 96 (300)
|+++|+|+|+ |.+|+.+++.+.+. -+++|+++.++.. .|-+...+..... .... ....+.++
T Consensus 1 ~~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (346)
T PRK06813 1 MKIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEE 79 (346)
T ss_pred CeeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHH
Confidence 4799999998 99999999998653 2578999988532 1222222110000 0000 01122333
Q ss_pred HHhcccccCCccEEEEcCCc-----hhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHH
Q 022250 97 VLGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (300)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p-----~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l 171 (300)
.+.. ..+.|||||+|.. +...++++.++++|+|||...-+.-....++|.++|+++++.+.|-++..=|+-+
T Consensus 80 ~~~~---~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPi 156 (346)
T PRK06813 80 RATD---NISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPT 156 (346)
T ss_pred HhcC---CCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccch
Confidence 3320 1258999999864 5678899999999999997766554556788999999999999999998888877
Q ss_pred HHHH
Q 022250 172 LQQA 175 (300)
Q Consensus 172 l~~~ 175 (300)
+.-+
T Consensus 157 I~~l 160 (346)
T PRK06813 157 LDIG 160 (346)
T ss_pred HHHH
Confidence 7665
No 36
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.72 E-value=1.4e-07 Score=76.87 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=72.9
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCcC-CCCcceec-CHHHHHhcccccCCccEEEEc
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQ-PLEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~~-~~gv~v~~-dl~~~l~~~~~~~~~DVVIDf 113 (300)
||+|+|+||.+|+.+++.+.++|+++++.++.++. .|+.......... .....+.+ +.+++ .++|+|+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-------SDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-------TTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-------hcCCEEEec
Confidence 79999999999999999999999999999999876 7777665432100 01223333 33333 489999989
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250 114 TDASTVYDNVKQATAFGMRSVVYVPHI 140 (300)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTTG~ 140 (300)
++.....+....+++.|+.||--++.+
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHH
Confidence 888899999999999999777555444
No 37
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.70 E-value=6.3e-08 Score=93.82 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=93.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCc-CC--CCcceecCHHHHHhcccccCCccEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-QP--LEIPVMSDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~-~~--~gv~v~~dl~~~l~~~~~~~~~DVV 110 (300)
|+||.|+|| |++|+.++..++++.+.++.. .|++. ...++....+.. +. ..+.-.+.+.++++ +.|+|
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~i-AdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~------~~d~V 72 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTI-ADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK------DFDLV 72 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEE-EeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh------cCCEE
Confidence 689999999 999999999998888777764 44432 111111111000 01 11112245667774 56999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH-H-HHHHHHHh
Q 022250 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI-L-LQQAAISA 179 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~-l-l~~~a~~~ 179 (300)
|.+-+|......++.|+++|+++|- |...++...++.+.|+++|+.++...-|+.|+. + ..++++.+
T Consensus 73 In~~p~~~~~~i~ka~i~~gv~yvD--ts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~ 141 (389)
T COG1748 73 INAAPPFVDLTILKACIKTGVDYVD--TSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKEL 141 (389)
T ss_pred EEeCCchhhHHHHHHHHHhCCCEEE--cccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHh
Confidence 9999999999999999999999995 333222237899999999999999999999975 2 23444444
No 38
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=98.69 E-value=1.2e-07 Score=87.37 Aligned_cols=115 Identities=19% Similarity=0.324 Sum_probs=98.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
..||.|-|.+|++|+.+.+..++. +..+|+.+.+.+-|.. -.++|+|++++|++++ ..+|+.+.|-
T Consensus 8 ~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~---------~~g~PVf~tV~EA~~~----~~a~~svI~V 73 (293)
T COG0074 8 DTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQT---------ILGLPVFNTVEEAVKE----TGANASVIFV 73 (293)
T ss_pred CCeEEEeccccccchHHHHHHHHh-CCceeecccCCCCceE---------EcCccHHHHHHHHHHh----hCCCEEEEec
Confidence 378999999999999999999877 9999999987654433 2468999999999984 5899999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250 115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT 164 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N 164 (300)
+|..+.+.+..|+++|+++|+.-| |....+.-++.+.+++.++ .++.||
T Consensus 74 p~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~-~iiGPn 123 (293)
T COG0074 74 PPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGT-RLIGPN 123 (293)
T ss_pred CcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCC-EEECCC
Confidence 999999999999999999887766 8888778889999998884 577777
No 39
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=98.65 E-value=5.1e-07 Score=84.51 Aligned_cols=118 Identities=18% Similarity=0.306 Sum_probs=95.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccC-CccEEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK-ARAVVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~-~~DVVIDf 113 (300)
..||.|.|.||++|+.+.+.+... ++.+++.+.+...+ . .-.|++.|.+++++-+ . ++|++|.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~~~---~------~v~G~~~y~sv~dlp~-----~~~~Dlavi~ 70 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGKGG---T------TVLGLPVFDSVKEAVE-----ETGANASVIF 70 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCCCc---c------eecCeeccCCHHHHhh-----ccCCCEEEEe
Confidence 478999999999999999988754 66688878764211 1 2358899999999874 2 38999999
Q ss_pred CCchhHHHHHHHHHHcCCCEE-EeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250 114 TDASTVYDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (300)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vV-igTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv 169 (300)
.+++.+.+.++.|.+.|++.+ |-|.||.+...++|.+.|+++++. ++.|| ++|+
T Consensus 71 vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gir-ilGPN-c~Gi 125 (286)
T TIGR01019 71 VPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTR-LIGPN-CPGI 125 (286)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EECCC-CceE
Confidence 999999999999999998665 556799876568899999999987 77888 5564
No 40
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=98.60 E-value=8e-07 Score=83.37 Aligned_cols=117 Identities=19% Similarity=0.300 Sum_probs=92.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCC--ccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA--RAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~--~DVVID 112 (300)
+.||.|+|.+|++|+.+.+.+.+. +++.+..+.+.. + .. .-.|++.|.+++++-+ . +|++|.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~-~--~~------~v~G~~~y~sv~dlp~------~~~~DlAvi 71 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGK-G--GT------TVLGLPVFNTVAEAVE------ATGANASVI 71 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCC-C--CC------eEeCeeccCCHHHHhh------ccCCCEEEE
Confidence 579999999999999999999864 454555565431 0 11 2357899999999974 4 899999
Q ss_pred cCCchhHHHHHHHHHHcCCCE-EEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250 113 FTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~v-VigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv 169 (300)
+.+++.+.+.++.|.+.|++. ||-|.||..++.++|.+.|+++++. ++.|| ++|+
T Consensus 72 ~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gir-vlGPN-c~Gi 127 (291)
T PRK05678 72 YVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTR-LIGPN-CPGI 127 (291)
T ss_pred EcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EECCC-CCcc
Confidence 999999999999999999876 4556799876567899999999987 77899 5564
No 41
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.54 E-value=7.3e-07 Score=86.23 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=87.8
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-------ecCHHHHHhcccccCCccEE
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~DVV 110 (300)
|+|+|+ |.||+.+++.+.+..+.+=+.+.|++. ..+..++.......+.. .+++++++ .+.|+|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~------~~~dvV 71 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELL------RGCDVV 71 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHH------TTSSEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHH------hcCCEE
Confidence 789999 999999999999888774444566542 22222221000011111 12355566 367999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH--HHHHHHHHhc
Q 022250 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISAS 180 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~--ll~~~a~~~~ 180 (300)
|++..|......++.|+++|+|.|- |.+-.++..++.+.++++++.++.+.-|..|.. +...+++.+.
T Consensus 72 in~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~ 141 (386)
T PF03435_consen 72 INCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELD 141 (386)
T ss_dssp EE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred EECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhh
Confidence 9999999889999999999999998 544345678899999999999999999999976 2355666665
No 42
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.49 E-value=9.4e-07 Score=69.31 Aligned_cols=90 Identities=23% Similarity=0.310 Sum_probs=71.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
+.||+|+|+ |++|++++.......++++++++|.++ ...++ .-.|+|+|++++++.+. .++|+.|-+.
T Consensus 3 ~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~--~~~G~-----~i~gipV~~~~~~l~~~----~~i~iaii~V 70 (96)
T PF02629_consen 3 KTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDP--EKIGK-----EIGGIPVYGSMDELEEF----IEIDIAIITV 70 (96)
T ss_dssp TEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECT--TTTTS-----EETTEEEESSHHHHHHH----CTTSEEEEES
T ss_pred CCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCC--CccCc-----EECCEEeeccHHHhhhh----hCCCEEEEEc
Confidence 478999998 999999886667778999999999654 22222 23489999999999863 2499999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEe
Q 022250 115 DASTVYDNVKQATAFGMRSVVY 136 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVig 136 (300)
+++.+.+.+..++++|+..|+-
T Consensus 71 P~~~a~~~~~~~~~~gIk~i~n 92 (96)
T PF02629_consen 71 PAEAAQEVADELVEAGIKGIVN 92 (96)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999887754
No 43
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.45 E-value=1.8e-06 Score=82.08 Aligned_cols=134 Identities=16% Similarity=0.118 Sum_probs=95.0
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhc---------CCcEEEEEEecCC--C-CcchhhhhcCcCCCCcceecCH-----HH
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHS--V-GEDIGMVCDMEQPLEIPVMSDL-----TM 96 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~--~-g~d~~~~~g~~~~~gv~v~~dl-----~~ 96 (300)
|++||+|+|. |.+|+.+++.+.+. .+++++++.+++. . +.+.. +. -...++. .+
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~ 72 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLL-------NA-EVWTTDGALSLGDE 72 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhccccccc-------ch-hhheecccccccHh
Confidence 5699999997 99999999998764 3678899988642 1 11111 10 1223343 34
Q ss_pred HHhcccccCCccEEEEcCCc--hhH--HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250 97 VLGSISQSKARAVVIDFTDA--STV--YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (300)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p--~~~--~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll 172 (300)
++. ..+.|+||+.+.. +.. .+++..++++|+|||..--..-.....+|.++|+++|+.+.|=++-.=|+-++
T Consensus 73 ~~~----~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI 148 (333)
T COG0460 73 VLL----DEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPII 148 (333)
T ss_pred hhc----cccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchH
Confidence 443 3688999997743 333 48999999999999976556555678999999999999999988877777665
Q ss_pred HHHHHHhc
Q 022250 173 QQAAISAS 180 (300)
Q Consensus 173 ~~~a~~~~ 180 (300)
.-+-..++
T Consensus 149 ~~lr~~l~ 156 (333)
T COG0460 149 KLLRELLA 156 (333)
T ss_pred HHHHhhcc
Confidence 54444443
No 44
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=1.7e-06 Score=81.67 Aligned_cols=205 Identities=19% Similarity=0.117 Sum_probs=118.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCC-------Ccc--hhhhhcC---c------CCCCcceecCHH
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSV-------GED--IGMVCDM---E------QPLEIPVMSDLT 95 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~-------g~d--~~~~~g~---~------~~~gv~v~~dl~ 95 (300)
|+||+|+|+ ||+||.+++++.+++ ++|+||+-|.... -.| -+.+.+- . ...+++++...+
T Consensus 1 ~ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 1 MIKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred CcEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence 589999998 999999999999988 7999999882100 000 0111110 0 123567765555
Q ss_pred -HHHhcccccCCccEEEEcCCchhHHHHHHHHHHcC--CCEEEeCCCCCH-HH-----HHHHHHHhhhCCCeEEEcCCCc
Q 022250 96 -MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG--MRSVVYVPHIQL-ET-----VSALSAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 96 -~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G--~~vVigTTG~~~-e~-----~~~L~~~a~~~~i~iv~a~N~S 166 (300)
+.|.- .+...|+|||+|.--...+++..-+++| +.|+++-|+-++ .. -....+. .+ -+-+|-|
T Consensus 80 p~~l~w--~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~-~~-----~iVsnaS 151 (335)
T COG0057 80 PANLPW--ADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDA-GH-----TIVSNAS 151 (335)
T ss_pred hHHCCc--cccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCC-CC-----cEEEEcc
Confidence 55431 1235789999998777888888878776 777777665431 00 0001111 12 2336778
Q ss_pred HHHHHHHHHHHHhccCCCCeE---EEEccC----C-CCCCCchHHHHHHHHHHhcCCccccCcccccccccccccc--CC
Q 022250 167 IGSILLQQAAISASFHYKNVE---IVESRP----N-ARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLG--ED 236 (300)
Q Consensus 167 iGv~ll~~~a~~~~~~~~die---IiE~Hh----~-K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~--~~ 236 (300)
---|=|..+++.+... |.|| ++=.|. + -+|.|+-- ++-++++....-. . .++....-+-++. ++
T Consensus 152 CTTNcLap~~kvl~d~-fGI~~g~mTtVh~~T~dQ~~~dgph~~-~rr~raa~~niIp-~---sTgaAkav~~VlP~L~g 225 (335)
T COG0057 152 CTTNCLAPVAKVLNDA-FGIEKGLMTTVHAYTNDQKLVDGPHKD-LRRARAAALNIIP-T---STGAAKAVGLVLPELKG 225 (335)
T ss_pred chhhhhHHHHHHHHHh-cCeeEEEEEEEEcccCCCccccCcccc-hhhhccccCCCCc-C---CCcchhhhhhhCcccCC
Confidence 8888888888887643 4554 233373 2 48888655 5555554331100 0 0000000111111 24
Q ss_pred CeeEEEEEcCCCCe-eEEE
Q 022250 237 GVRVHSMVLPGLPS-STTV 254 (300)
Q Consensus 237 ~i~i~s~R~g~ivg-~H~V 254 (300)
.+.-+|+|.|..-+ -|.+
T Consensus 226 Kl~g~A~RVPt~~vs~~dl 244 (335)
T COG0057 226 KLTGMAIRVPTPNVSVVDL 244 (335)
T ss_pred ceeeEEEEecCCCcEEEEE
Confidence 57788999998766 4433
No 45
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=98.42 E-value=2.1e-06 Score=69.78 Aligned_cols=110 Identities=20% Similarity=0.318 Sum_probs=76.5
Q ss_pred eEEEEcCC---chHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 37 kV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
+|+|+|++ ++.|..+.+.+.+ .++++..+ ++.. ++ -.|.+.|.++++. . .++|+++-|
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~V-np~~-----~~------i~G~~~y~sl~e~-p-----~~iDlavv~ 62 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPV-NPKG-----GE------ILGIKCYPSLAEI-P-----EPIDLAVVC 62 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEE-STTC-----SE------ETTEE-BSSGGGC-S-----ST-SEEEE-
T ss_pred EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEE-CCCc-----eE------ECcEEeeccccCC-C-----CCCCEEEEE
Confidence 69999976 8899999999987 77888864 3321 22 2467889999983 3 589999999
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (300)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ 170 (300)
++|+...+.++.|.+.|+.-|+-.+|- ..+++.++++++++. ++.|| ++|+.
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~g~---~~~~~~~~a~~~gi~-vigp~-C~gv~ 114 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQPGA---ESEELIEAAREAGIR-VIGPN-CLGVV 114 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-TTS-----HHHHHHHHHTT-E-EEESS--HHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEcch---HHHHHHHHHHHcCCE-EEeCC-cceEE
Confidence 999999999999999999999988883 335688889998887 44455 66653
No 46
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.41 E-value=2.1e-06 Score=73.53 Aligned_cols=114 Identities=19% Similarity=0.143 Sum_probs=76.3
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
|+||+++|. |+||+.+++.+.+ .++++. ++|++. .....+. +.++...+++.++.+ .+|+|+-+.
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~-~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~s~~e~~~------~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAK-AGYEVT-VYDRSP--EKAEALA----EAGAEVADSPAEAAE------QADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHH-TTTEEE-EEESSH--HHHHHHH----HTTEEEESSHHHHHH------HBSEEEE-S
T ss_pred CCEEEEEch-HHHHHHHHHHHHh-cCCeEE-eeccch--hhhhhhH----HhhhhhhhhhhhHhh------cccceEeec
Confidence 689999997 9999999999874 588876 578653 2233333 346788899999985 679998775
Q ss_pred Cc-hhHHHHHHH--HHH--cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250 115 DA-STVYDNVKQ--ATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (300)
Q Consensus 115 ~p-~~~~~~~~~--al~--~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~ 163 (300)
+. +++.+.+.. .+. ..-.+++-++..++++..++.+.+++.|+..+=+|
T Consensus 66 ~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 66 PDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 54 555565554 333 22345566677778888899999888887766655
No 47
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.34 E-value=2.8e-06 Score=81.60 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=70.5
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCc-----CC--CCccee-cCHHHHHhccccc
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDME-----QP--LEIPVM-SDLTMVLGSISQS 104 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~~~~~g~~-----~~--~gv~v~-~dl~~~l~~~~~~ 104 (300)
||+||+|+|++|.+|+.+++.+.++|+++|+++ .+....|+....+.... .. ..+.+. .+.+++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------- 74 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV------- 74 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-------
Confidence 579999999999999999999999999999998 44444565554322110 00 112222 244433
Q ss_pred CCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250 105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT 138 (300)
.++|+|+++++.....+++..+.++|+.+|.-+.
T Consensus 75 ~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~ 108 (349)
T PRK08664 75 DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNAS 108 (349)
T ss_pred cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCc
Confidence 3689999888888889999999999999887654
No 48
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.31 E-value=8.9e-06 Score=73.53 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=75.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
++||+|+|+ |+||+.+++.+.... +.+-+-+++++. .+....+. .++++.+++|++++++ ++|+||.
T Consensus 4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~------~~DiVii 72 (245)
T PRK07634 4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQ---ARYNVSTTTDWKQHVT------SVDTIVL 72 (245)
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHH---HHcCcEEeCChHHHHh------cCCEEEE
Confidence 489999998 999999999887543 344233344321 01223332 2456777888988884 7899999
Q ss_pred cCCchhHHHHHHHHHH--cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (300)
Q Consensus 113 fT~p~~~~~~~~~al~--~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ 170 (300)
.++|..+.+.+..... .+..+|.-+-|++.+.+ ++.......-+..-||+..-+.
T Consensus 73 avp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l---~~~~~~~~~v~r~~Pn~a~~v~ 129 (245)
T PRK07634 73 AMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSYL---EERLPKGTPVAWIMPNTAAEIG 129 (245)
T ss_pred ecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHHH---HHHcCCCCeEEEECCcHHHHHh
Confidence 9999988887765543 24434444448987654 4433221112234477665443
No 49
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.29 E-value=5.4e-06 Score=76.08 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=68.3
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
||+||+|+|+ |.||+.+++.+.+.. ...-+.+++++. +....+. ..+++.+.++.+++++ ++|+||.
T Consensus 1 ~mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~--~~~~~~~---~~~g~~~~~~~~~~~~------~advVil 68 (267)
T PRK11880 1 MMKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSP--EKRAALA---EEYGVRAATDNQEAAQ------EADVVVL 68 (267)
T ss_pred CCCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCH--HHHHHHH---HhcCCeecCChHHHHh------cCCEEEE
Confidence 6789999998 999999999887542 123455677643 2222222 2346667778888773 7899999
Q ss_pred cCCchhHHHHHHHHHHc-CCCEEEeCCCCCHHHHH
Q 022250 113 FTDASTVYDNVKQATAF-GMRSVVYVPHIQLETVS 146 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~-G~~vVigTTG~~~e~~~ 146 (300)
++.|..+.+.++.+... +..||.-+.|.+.++++
T Consensus 69 ~v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~ 103 (267)
T PRK11880 69 AVKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLE 103 (267)
T ss_pred EcCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHH
Confidence 99998888888776554 44455545578765544
No 50
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.28 E-value=3.3e-06 Score=80.62 Aligned_cols=137 Identities=18% Similarity=0.143 Sum_probs=87.4
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCc------------CCCCcceecCHHHHHhccccc
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDME------------QPLEIPVMSDLTMVLGSISQS 104 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~~g~~------------~~~gv~v~~dl~~~l~~~~~~ 104 (300)
|+|+|+ |++|+.+++.+.+.+++|||++.|.+.. ...+..+.|.. .+.++.++.++++++.
T Consensus 1 VaInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~----- 74 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE----- 74 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh-----
Confidence 689998 9999999999988899999999985321 00111111100 1234666778999984
Q ss_pred CCccEEEEcCCchhHHHHHHHHHHcCCCEE-EeCCCCCHHHH-----HHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHH
Q 022250 105 KARAVVIDFTDASTVYDNVKQATAFGMRSV-VYVPHIQLETV-----SALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178 (300)
Q Consensus 105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vV-igTTG~~~e~~-----~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~ 178 (300)
++|+|+++|....+..+.+..++.|...| +|-+.-+..+. -.-.++.. -. +-+|-|---|=|..+++.
T Consensus 75 -~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~---~~--~vs~aSCtTn~Lap~~~~ 148 (333)
T TIGR01546 75 -KVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALG---KD--YVRVVSCNTTGLVRTLNA 148 (333)
T ss_pred -cCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCc---Cc--eEEecCchHhhHHHHHHH
Confidence 79999999988888999999999985554 55442210000 00011111 12 336677777777777777
Q ss_pred hccCCCCeE
Q 022250 179 ASFHYKNVE 187 (300)
Q Consensus 179 ~~~~~~die 187 (300)
+.+. |.||
T Consensus 149 L~~~-fGI~ 156 (333)
T TIGR01546 149 INDY-SKVD 156 (333)
T ss_pred HHHh-cCeE
Confidence 6543 4443
No 51
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.27 E-value=1.1e-05 Score=85.69 Aligned_cols=143 Identities=16% Similarity=0.157 Sum_probs=95.8
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcC--------CcEEEEEEecCC-----CCcchhhhhcCcCC-CCcceecCHHHHHh
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS-----VGEDIGMVCDMEQP-LEIPVMSDLTMVLG 99 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~-----~g~d~~~~~g~~~~-~gv~v~~dl~~~l~ 99 (300)
++++|+|+|+ |.+|+.+++.+.+.. +++++++.++.. .|-+...+.-.... ...+-.+++-+.+.
T Consensus 464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (819)
T PRK09436 464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVK 542 (819)
T ss_pred ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHh
Confidence 4799999998 999999999986543 577889887531 12222222100000 00000112222332
Q ss_pred cccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCH---HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHH
Q 022250 100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (300)
Q Consensus 100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~---e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a 176 (300)
. .....||+||+|.-+....+...++++|+|||...-+.-. ++.++|.++|+++++.+.|.++..=|.-++.-+-
T Consensus 543 ~--~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l~ 620 (819)
T PRK09436 543 E--YHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETLQ 620 (819)
T ss_pred h--cCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHHH
Confidence 0 0124699999998777777788999999999987654322 6889999999999999999999988888776664
Q ss_pred HHh
Q 022250 177 ISA 179 (300)
Q Consensus 177 ~~~ 179 (300)
..+
T Consensus 621 ~~~ 623 (819)
T PRK09436 621 NLL 623 (819)
T ss_pred HHH
Confidence 444
No 52
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.25 E-value=1.5e-05 Score=74.26 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=77.4
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
|++||+|+|+ |.||+.+++.+.+ .++++. ++|++. .....+. ..++...++++++++ ++|+||.+
T Consensus 1 ~~~~IgviG~-G~mG~~~a~~l~~-~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~e~~~------~~d~vi~~ 65 (296)
T PRK11559 1 MTMKVGFIGL-GIMGKPMSKNLLK-AGYSLV-VYDRNP--EAVAEVI----AAGAETASTAKAVAE------QCDVIITM 65 (296)
T ss_pred CCceEEEEcc-CHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEe
Confidence 5679999997 9999999998875 678876 477643 2222222 345666788888874 78999987
Q ss_pred CCchhHHHHHH-------HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250 114 TDASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (300)
Q Consensus 114 T~p~~~~~~~~-------~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~ 165 (300)
.++....+.+. ..+..|. +|+-++..++...+++.+.+++.++..+-+|=+
T Consensus 66 vp~~~~~~~v~~~~~~~~~~~~~g~-iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~ 123 (296)
T PRK11559 66 LPNSPHVKEVALGENGIIEGAKPGT-VVIDMSSIAPLASREIAAALKAKGIEMLDAPVS 123 (296)
T ss_pred CCCHHHHHHHHcCcchHhhcCCCCc-EEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCC
Confidence 76554433331 2223344 444445555666778888887778888887744
No 53
>PLN02700 homoserine dehydrogenase family protein
Probab=98.23 E-value=1.5e-05 Score=77.17 Aligned_cols=139 Identities=17% Similarity=0.240 Sum_probs=89.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC--------CcEEEEEEecCC---------CCcchhhhhc---C-cCCCCccee--
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS---------VGEDIGMVCD---M-EQPLEIPVM-- 91 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~---------~g~d~~~~~g---~-~~~~gv~v~-- 91 (300)
+++|+|+|+ |.+|+.+++.+.+.. ++.++++.|+.. .|-|...+.. . ........+
T Consensus 3 ~i~i~liG~-G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T PLN02700 3 KIPVLLLGC-GGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA 81 (377)
T ss_pred EEEEEEEec-ChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence 589999998 999999999876543 367888888521 1333222111 0 001111000
Q ss_pred -----------------cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhh
Q 022250 92 -----------------SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (300)
Q Consensus 92 -----------------~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~ 154 (300)
.+..+.+. ....+|+||+|......++...++++|+|||...-+......+++.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~- 156 (377)
T PLN02700 82 LAGGCQVFNNSELSRKVIDIATLLG----KSTGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA- 156 (377)
T ss_pred ccccccccccccccchhhhHHHHhh----ccCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-
Confidence 11222231 13469999999887888999999999999997755433334455666664
Q ss_pred CCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250 155 ASMGCLIAPTLSIGSILLQQAAISA 179 (300)
Q Consensus 155 ~~i~iv~a~N~SiGv~ll~~~a~~~ 179 (300)
+++.+.|.+|..-|.-++.-+-..+
T Consensus 157 ~~~~~~yEatVgaGlPiI~tl~~ll 181 (377)
T PLN02700 157 HPRRIRHESTVGAGLPVIASLNRIL 181 (377)
T ss_pred cCCeEEEEeeeeeccchHHHHHHHh
Confidence 6899999999888887776555444
No 54
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=98.23 E-value=6.5e-06 Score=78.82 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=67.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc------CcC-CCCcceecCHH-HHHhcccccCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD------MEQ-PLEIPVMSDLT-MVLGSISQSKA 106 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g------~~~-~~gv~v~~dl~-~~l~~~~~~~~ 106 (300)
+||+|+|++|.||+.+++.+.++++++|++++++. ..|++..+... ... -....+ .+++ +.+ .+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~ 73 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPI-VEPEPVAS------KD 73 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEE-EeCCHHHh------cc
Confidence 58999999999999999999989999999998753 35555543221 100 001111 1222 222 47
Q ss_pred ccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (300)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (300)
+|+|+.++++..+.++...++++|+.+|.=+
T Consensus 74 ~DvVf~a~p~~~s~~~~~~~~~~G~~VIDls 104 (341)
T TIGR00978 74 VDIVFSALPSEVAEEVEPKLAEAGKPVFSNA 104 (341)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHCCCEEEECC
Confidence 8999989989989999999999999988643
No 55
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=98.21 E-value=9.8e-06 Score=77.83 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=70.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc-CcCCCCcceec--CHHHHHhcccccCCccEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD-MEQPLEIPVMS--DLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g-~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVI 111 (300)
|||+|+|+||.+|+.+++.+.++|+++|+.++++. ..|+.+.+... +....+. .++ +.++++ .++|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~-~~~~~~~~~~~------~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDL-NLEPIDEEEIA------EDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCc-eeecCCHHHhh------cCCCEEE
Confidence 58999999999999999999999999999887653 34554433221 0000011 122 445554 3689999
Q ss_pred EcCCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250 112 DFTDASTVYDNVKQATAFGMRSVVYVPHI 140 (300)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTTG~ 140 (300)
-+++...+.+.+..++++|++||-=+..|
T Consensus 74 ~alP~~~s~~~~~~~~~~G~~VIDlS~~f 102 (346)
T TIGR01850 74 LALPHGVSAELAPELLAAGVKVIDLSADF 102 (346)
T ss_pred ECCCchHHHHHHHHHHhCCCEEEeCChhh
Confidence 77777888999999999999888666543
No 56
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.13 E-value=3.2e-05 Score=81.87 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=92.7
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhhcCcCCCCcceecCHHHHHh
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLG 99 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~-----~g~d~~~~~g~~~~~gv~v~~dl~~~l~ 99 (300)
++++|+|+|+ |.+|+.+++.+.+.. +++++++.++.. .|-+...+..... ......+++.+++
T Consensus 457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~--~~~~~~~~~~~~e 533 (810)
T PRK09466 457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFD--DEAVEWDEESLFL 533 (810)
T ss_pred ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHH--hhcCCccHHHHHH
Confidence 4699999998 999999999986532 478899988532 1222222210000 0001112332221
Q ss_pred cccc-cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHH
Q 022250 100 SISQ-SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (300)
Q Consensus 100 ~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~---~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~ 174 (300)
.+.. +.+.+|+||+|..+....+...++++|+|||...-.. ..+..++|.++|+++++.+.|-++..=|.-++.-
T Consensus 534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii~~ 612 (810)
T PRK09466 534 WLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPINHT 612 (810)
T ss_pred HHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChHHH
Confidence 1100 1223699999987777777889999999999876532 3468899999999999999999999888877433
No 57
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.11 E-value=2.6e-05 Score=71.45 Aligned_cols=117 Identities=9% Similarity=0.055 Sum_probs=72.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCC-CcceecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
|||+|+|+ |+||+.+++.+.+.. ..+-+.+++++. ..+..+. ... ++.+++|.+++++ ++|+|+-.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~--~~~~~l~---~~~~~~~~~~~~~~~~~------~aDvVila 68 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNA--QIAARLA---ERFPKVRIAKDNQAVVD------RSDVVFLA 68 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCH--HHHHHHH---HHcCCceEeCCHHHHHH------hCCEEEEE
Confidence 48999998 999999999987542 223345566532 2222332 123 4667788888874 68999999
Q ss_pred CCchhHHHHHHHH-HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250 114 TDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 167 (300)
Q Consensus 114 T~p~~~~~~~~~a-l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~Si 167 (300)
+.|+...+.+... +..+..+|.-..|.+.++++.+ .......+...||...
T Consensus 69 v~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~---~~~~~~~~r~~P~~~~ 120 (258)
T PRK06476 69 VRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEW---IGHDVKLVRAIPLPFV 120 (258)
T ss_pred eCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHH---hCCCCCEEEECCCChh
Confidence 9988877776543 2345555554447877665444 3322234445565433
No 58
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=98.09 E-value=1.6e-05 Score=71.94 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=95.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
.||.+-|.||+-|..|.+...+ .+..+||.+++.+.|. .-+|.|++.+..|+.++ .++|+-+.|-+
T Consensus 39 TkVi~QGfTGKqgTFHs~q~~e-YgTk~VgG~~pkK~Gt---------~HLG~PVF~sV~eA~~~----t~a~AsvIyVP 104 (329)
T KOG1255|consen 39 TKVICQGFTGKQGTFHSQQALE-YGTKVVGGVNPKKGGT---------THLGLPVFNSVAEAKKE----TGADASVIYVP 104 (329)
T ss_pred ceEEEecccCCccceeHHHHHH-hCCceeeccCCCcCcc---------cccCchhhhhHHHHHHh----hCCCceEEEeC
Confidence 7999999999999999998774 6899999998865432 35688999999999874 78999888999
Q ss_pred chhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250 116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL 165 (300)
Q Consensus 116 p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~ 165 (300)
|......+..++++-+|++++-| |....+.-++...-...+..-++.||-
T Consensus 105 pp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNC 155 (329)
T KOG1255|consen 105 PPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNC 155 (329)
T ss_pred ChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCC
Confidence 99999999999999999998876 887766666666654444556888884
No 59
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.08 E-value=1.8e-05 Score=70.83 Aligned_cols=92 Identities=24% Similarity=0.369 Sum_probs=67.0
Q ss_pred cceEEEEcCCchHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVI 111 (300)
..||+|+|+ |.+|+.+++.+. ...+++++|++|.+. ...+... .++++ ++++++++. +.++|++|
T Consensus 84 ~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~--~~~~~~i-----~g~~v~~~~~l~~li~----~~~iD~Vi 151 (213)
T PRK05472 84 TWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDP--EKIGTKI-----GGIPVYHIDELEEVVK----ENDIEIGI 151 (213)
T ss_pred CcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECCh--hhcCCEe-----CCeEEcCHHHHHHHHH----HCCCCEEE
Confidence 579999998 999999998642 357899999999643 1111111 12333 467788875 25799999
Q ss_pred EcCCchhHHHHHHHHHHcCCCEE-EeCC
Q 022250 112 DFTDASTVYDNVKQATAFGMRSV-VYVP 138 (300)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vV-igTT 138 (300)
.++++..+.+....++++|+..| +.+|
T Consensus 152 Ia~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 152 LTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred EeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 88888888999999999996555 4455
No 60
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.07 E-value=2.6e-05 Score=60.24 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=60.7
Q ss_pred eEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceec-CHHHHHhcccccCCccEEEEc
Q 022250 37 KVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVIDf 113 (300)
||+++|+ |+||+++++.+.+.. ..++.-+.+++. +.+.++. ..+++.++. +..++++ .+|+||-.
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~---~~~~~~~~~~~~~~~~~------~advvila 68 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELA---KEYGVQATADDNEEAAQ------EADVVILA 68 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHH---HHCTTEEESEEHHHHHH------HTSEEEE-
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHH---HhhccccccCChHHhhc------cCCEEEEE
Confidence 7999997 999999999987542 267775556543 3333343 345666665 7888884 78999999
Q ss_pred CCchhHHHHHHHH--HHcCCCEEE
Q 022250 114 TDASTVYDNVKQA--TAFGMRSVV 135 (300)
Q Consensus 114 T~p~~~~~~~~~a--l~~G~~vVi 135 (300)
..|....+.+... ...++-+|.
T Consensus 69 v~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 69 VKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ECHHHHHHHHHHHhhccCCCEEEE
Confidence 9999988877765 556666664
No 61
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=98.05 E-value=4.5e-05 Score=75.71 Aligned_cols=113 Identities=18% Similarity=0.260 Sum_probs=86.1
Q ss_pred ceEEEEcCC---chHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250 36 IKVIINGAV---KEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV 110 (300)
-+|+|+|++ |++|..+.+.+.+ .++ ++.. +++.. .+ -.|+++|.+++++- ..+|++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~-~gf~g~v~~-Vnp~~-----~~------i~G~~~~~sl~~lp------~~~Dla 68 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIE-GGYKGKIYP-VNPKA-----GE------ILGVKAYPSVLEIP------DPVDLA 68 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHh-CCCCCcEEE-ECCCC-----Cc------cCCccccCCHHHCC------CCCCEE
Confidence 579999997 7899999999875 344 4543 44331 12 35789999999984 479999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCEE-EeCCCCCH------HHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250 111 IDFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGS 169 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vV-igTTG~~~------e~~~~L~~~a~~~~i~iv~a~N~SiGv 169 (300)
|.+++++.+.+.++.|.+.|+..+ +-|.||.+ +..++|.++|+++|+. ++.|| ++|+
T Consensus 69 vi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir-vlGPn-c~G~ 132 (447)
T TIGR02717 69 VIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR-LLGPN-CLGI 132 (447)
T ss_pred EEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE-EEecC-eeeE
Confidence 999999999999999999998766 55668764 2247899999999987 56677 3553
No 62
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=98.05 E-value=1.3e-05 Score=76.66 Aligned_cols=152 Identities=19% Similarity=0.100 Sum_probs=91.1
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhh--hcCc---CCCCccee--c
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMV--CDME---QPLEIPVM--S 92 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~~~~--~g~~---~~~gv~v~--~ 92 (300)
|++||+|+|+ |||||.+.+.+.++++++|+++.|+.. .|+--+++ .|-. ....+.++ .
T Consensus 1 m~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 1 MTIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNK 79 (334)
T ss_pred CCeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecC
Confidence 4589999999 999999999999889999999988310 11100000 0000 00112332 2
Q ss_pred CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC-C-----------CCCHHHHHHHHHHhhhCCCeEE
Q 022250 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-P-----------HIQLETVSALSAFCDKASMGCL 160 (300)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT-T-----------G~~~e~~~~L~~~a~~~~i~iv 160 (300)
+++++- + .++|+|+++|-.....+.+...++.|..+|+=+ + |.+++ .+.. +. -.++
T Consensus 80 ~~~~~~----w-~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~---~~~~--~~--~~II 147 (334)
T PRK08955 80 AIADTD----W-SGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDH---LFDP--AI--HPIV 147 (334)
T ss_pred ChhhCC----c-cCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHH---Hhcc--cC--CCEE
Confidence 444432 2 389999999999989999999999997766543 2 22222 2221 11 2344
Q ss_pred EcCCCcHHHHHHHHHHHHhccCC--CCeEEEEccC--C---CCCCCc
Q 022250 161 IAPTLSIGSILLQQAAISASFHY--KNVEIVESRP--N---ARDFPS 200 (300)
Q Consensus 161 ~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~Hh--~---K~DaPS 200 (300)
+|=|--.|-|.-+++.+-+.+ ...-+.-.|- + -.|.|+
T Consensus 148 --SnasCtTn~Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~ 192 (334)
T PRK08955 148 --TAASCTTNCLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH 192 (334)
T ss_pred --ECCccHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC
Confidence 666777776666666664322 2233444573 2 357775
No 63
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=98.03 E-value=4.7e-05 Score=72.77 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=63.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHH-HHHhcccccCCccEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI 111 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVI 111 (300)
|+||+|+|+||..|+.+++.+.+ +|.++|+++......|+... +.| ..+.+. |++ ..+ .++|+||
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-~~g----~~i~v~-d~~~~~~------~~vDvVf 68 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-FKG----KELKVE-DLTTFDF------SGVDIAL 68 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-eCC----ceeEEe-eCCHHHH------cCCCEEE
Confidence 47999999999999999999987 68889999766544444432 111 123332 222 233 3789999
Q ss_pred EcCCchhHHHHHHHHHHcCCCEE
Q 022250 112 DFTDASTVYDNVKQATAFGMRSV 134 (300)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vV 134 (300)
.++......+.+..++++|+.||
T Consensus 69 ~A~g~g~s~~~~~~~~~~G~~VI 91 (334)
T PRK14874 69 FSAGGSVSKKYAPKAAAAGAVVI 91 (334)
T ss_pred ECCChHHHHHHHHHHHhCCCEEE
Confidence 77777778899999999999555
No 64
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=98.03 E-value=3.5e-05 Score=65.45 Aligned_cols=33 Identities=39% Similarity=0.434 Sum_probs=30.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
+||+|+|+ |+||+.+++.+.+.++++|+++.|.
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecC
Confidence 58999998 9999999999998899999999984
No 65
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=98.02 E-value=1.6e-05 Score=67.76 Aligned_cols=34 Identities=38% Similarity=0.419 Sum_probs=31.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
|||+|+|+ ||+||.+.+.+...+++||+++-|..
T Consensus 1 ikVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 1 IKVGINGF-GRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred CEEEEECC-CcccHHHHHhhcccceEEEEEEeccc
Confidence 69999998 99999999999999999999998854
No 66
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.00 E-value=4.1e-05 Score=62.07 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=62.6
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCcCCCCcceecCHH-HHHhcccccCCccEEEEcC
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVIDfT 114 (300)
||+|+|++|.+|+.+++.+.+.++++++++++++ ..|+++.... ....-.++.+++ +.++ ..++|+|+.++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAG---PHLKGEVVLELEPEDFE----ELAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHC---cccccccccccccCChh----hcCCCEEEEcC
Confidence 6899998899999999999988999999997753 2344443221 111101111221 1111 14789999888
Q ss_pred CchhHHHHH---HHHHHcCCCEEEeCCCC
Q 022250 115 DASTVYDNV---KQATAFGMRSVVYVPHI 140 (300)
Q Consensus 115 ~p~~~~~~~---~~al~~G~~vVigTTG~ 140 (300)
+++.+.+.+ ..+++.|+.+|--++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 74 PHGVSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred CcHHHHHHHHHHHhhhcCCCEEEECCccc
Confidence 888888853 44567888777544434
No 67
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.96 E-value=4.1e-05 Score=72.57 Aligned_cols=124 Identities=14% Similarity=0.178 Sum_probs=76.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhh-------hcCcCCCCcceecCHHHHHhcccccCC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMV-------CDMEQPLEIPVMSDLTMVLGSISQSKA 106 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~-------~g~~~~~gv~v~~dl~~~l~~~~~~~~ 106 (300)
+|||+|+|+ |.||..++..+.. .++++. +++++. ..+.+... .|...+..+..++++++++ .+
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~-~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~------~~ 74 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAAS-KGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL------AG 74 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHH-CCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH------cC
Confidence 469999998 9999999998874 467755 456532 00111110 0100001144567888877 37
Q ss_pred ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHH--HHHHHHHhhh---CCCeEEEcCCCcHH
Q 022250 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCDK---ASMGCLIAPTLSIG 168 (300)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~--~~~L~~~a~~---~~i~iv~a~N~SiG 168 (300)
+|+||-+.++..+.+.+ ..++.+..+|.-++|+++++ ...+.+...+ .++.++..||+.--
T Consensus 75 aD~Vi~~v~~~~~~~v~-~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~ 140 (328)
T PRK14618 75 ADFAVVAVPSKALRETL-AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEE 140 (328)
T ss_pred CCEEEEECchHHHHHHH-HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHH
Confidence 89999777777655544 34456777777788876443 4455555544 56777888887654
No 68
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.95 E-value=0.00012 Score=68.67 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=72.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
|||+++|+ |+||+.+++.+.+ .+++|+ ++|++. .....+. ..|+..+++++++.++ ...+|+||-+.+
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~s~~~~~~~---~~~advVi~~vp 68 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLRE-DGHEVV-GYDVNQ--EAVDVAG----KLGITARHSLEELVSK---LEAPRTIWVMVP 68 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHHh---CCCCCEEEEEec
Confidence 48999997 9999999999875 578877 588653 1222222 3466778899988751 013699988877
Q ss_pred ch-hHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250 116 AS-TVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (300)
Q Consensus 116 p~-~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv 160 (300)
++ .+.+.+..... .| .+||-++.-+++...++.+.+++.++..+
T Consensus 69 ~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~v 116 (299)
T PRK12490 69 AGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYV 116 (299)
T ss_pred CchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence 66 44554444332 33 46666655545555666666666666544
No 69
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.94 E-value=6e-05 Score=72.18 Aligned_cols=121 Identities=16% Similarity=0.151 Sum_probs=80.1
Q ss_pred CCcceEEEEcCCchHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec-CHHHHHhcccccCCccE
Q 022250 33 QSNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAV 109 (300)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DV 109 (300)
++|+||+|+|+||-.|+.+++.+. .+|..+|+.+.+....|+.+. +.| ....+.+ +.++ + .++|+
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~-~~~----~~l~~~~~~~~~-~------~~vD~ 69 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP-FAG----KNLRVREVDSFD-F------SQVQL 69 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec-cCC----cceEEeeCChHH-h------cCCCE
Confidence 346899999999999999999998 578999998877655554432 111 1122221 2222 3 37899
Q ss_pred EEEcCCchhHHHHHHHHHHcCCCEEEeC------------CCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHH
Q 022250 110 VIDFTDASTVYDNVKQATAFGMRSVVYV------------PHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (300)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vVigT------------TG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l 171 (300)
|+-++++....+.+..+.++|+.||-=+ |.++.++ |..+- + ..++-.||=+.-..+
T Consensus 70 vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~---i~~~~-~--~~iIAnPgC~~t~~~ 137 (336)
T PRK05671 70 AFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAER---LASLA-A--PFLVSSPSASAVALA 137 (336)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHH---Hcccc-C--CCEEECCCcHHHHHH
Confidence 9866777778889999999999877433 3334433 32221 2 357888887766544
No 70
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.94 E-value=0.00017 Score=67.74 Aligned_cols=118 Identities=12% Similarity=0.075 Sum_probs=75.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
|||+++|+ |.||+.+++.+.+ .+++++ ++|++. .....+. ..|+.++++++++.+.. .++|+||-+.+
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~~~~e~~~~~---~~~dvvi~~v~ 68 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLR-GGHEVV-GYDRNP--EAVEALA----EEGATGADSLEELVAKL---PAPRVVWLMVP 68 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHhhc---CCCCEEEEEec
Confidence 48999997 9999999999875 578865 477653 2222222 35677788898887510 14798887665
Q ss_pred ch-hHHHHHHHH---HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250 116 AS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 116 p~-~~~~~~~~a---l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S 166 (300)
+. .+.+.+... ++.|.-+|..+|+. ++...++.+.+++.|+..+=+|...
T Consensus 69 ~~~~~~~v~~~l~~~l~~g~ivid~st~~-~~~~~~~~~~~~~~g~~~~dapvsG 122 (301)
T PRK09599 69 AGEITDATIDELAPLLSPGDIVIDGGNSY-YKDDIRRAELLAEKGIHFVDVGTSG 122 (301)
T ss_pred CCcHHHHHHHHHHhhCCCCCEEEeCCCCC-hhHHHHHHHHHHHcCCEEEeCCCCc
Confidence 54 444444333 33453344444444 4455667777788888877777654
No 71
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.87 E-value=9.3e-05 Score=67.84 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=72.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~----eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (300)
|||+++|+ |.||..+++.+.+. ++ +++...+++. .....+ .+.|+.+.++.+++++ ++|+||
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~-g~~~~~~i~v~~~r~~--~~~~~~----~~~g~~~~~~~~e~~~------~aDvVi 66 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVAS-GVVPPSRISTADDSNP--ARRDVF----QSLGVKTAASNTEVVK------SSDVII 66 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHC-CCCCcceEEEEeCCCH--HHHHHH----HHcCCEEeCChHHHHh------cCCEEE
Confidence 68999997 99999999998754 44 6654336542 222222 2357777888888773 789999
Q ss_pred EcCCchhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE-EcCCCcH
Q 022250 112 DFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSI 167 (300)
Q Consensus 112 DfT~p~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv-~a~N~Si 167 (300)
-+..|+...+.+..... .+.-+|.-+.|.+.++++ +.... .+++ ..||...
T Consensus 67 l~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~---~~~~~--~~vvr~mP~~~~ 121 (266)
T PLN02688 67 LAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQ---EWAGG--RRVVRVMPNTPC 121 (266)
T ss_pred EEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHH---HHcCC--CCEEEECCCcHH
Confidence 98888887777655433 344344334577665544 33322 1555 5677544
No 72
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.87 E-value=0.00024 Score=65.86 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=74.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
|||+++|+ |.||+.+++.+.+.. ..+++ +++++.. +.+..+. .++++.++++..++++ ++|+||-
T Consensus 4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~~-~~~~~l~---~~~g~~~~~~~~e~~~------~aDvVil 71 (279)
T PRK07679 4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSNE-TRLQELH---QKYGVKGTHNKKELLT------DANILFL 71 (279)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCCH-HHHHHHH---HhcCceEeCCHHHHHh------cCCEEEE
Confidence 59999998 999999999988653 24444 4665320 1122222 2356777788888773 7899998
Q ss_pred cCCchhHHHHHHHHHHc--CCCEEEe-CCCCCHHHHHHHHHHhhhCCCeEEEc-CCCcHH
Q 022250 113 FTDASTVYDNVKQATAF--GMRSVVY-VPHIQLETVSALSAFCDKASMGCLIA-PTLSIG 168 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~--G~~vVig-TTG~~~e~~~~L~~~a~~~~i~iv~a-~N~SiG 168 (300)
...|....+.+...... .-.+||- ..|.+.+++.++ .. .+.|++.+ ||+..-
T Consensus 72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~---~~-~~~~v~r~mPn~~~~ 127 (279)
T PRK07679 72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNL---LQ-KDVPIIRAMPNTSAA 127 (279)
T ss_pred EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH---cC-CCCeEEEECCCHHHH
Confidence 88888887776655432 2235555 478887765543 32 23567755 665533
No 73
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.84 E-value=9.4e-05 Score=69.41 Aligned_cols=121 Identities=19% Similarity=0.240 Sum_probs=69.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC--------cCCCCcceecCHHHHHhccccc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM--------EQPLEIPVMSDLTMVLGSISQS 104 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~--------~~~~gv~v~~dl~~~l~~~~~~ 104 (300)
||||+|+|+ |.||..++..+.+ .+.++ .+++++. ..+..+. +. ..+.++...++++++++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~-~g~~V-~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 70 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLAR-NGHDV-TLWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA----- 70 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHh-CCCEE-EEEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh-----
Confidence 479999998 9999999998875 46775 4566532 1111111 00 00114555678887773
Q ss_pred CCccEEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhh-----CCCeEEEcCCCc
Q 022250 105 KARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDK-----ASMGCLIAPTLS 166 (300)
Q Consensus 105 ~~~DVVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~-----~~i~iv~a~N~S 166 (300)
++|+||-++.+....+.+..... .+..+|.-+.|++.+....+.+..++ ....++..||+.
T Consensus 71 -~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~ 139 (325)
T PRK00094 71 -DADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFA 139 (325)
T ss_pred -CCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHH
Confidence 78999988777655555544443 34444444336654333223332222 235667778863
No 74
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.84 E-value=0.0001 Score=69.99 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=61.7
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
||+||+|+|+||-.|+.+++.+.++|+++|+....+.. .+. .+.++.+ .++|+|+=+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~---------------~~~~~~~------~~~DvvFla 57 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA---------------AARRELL------NAADVAILC 57 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc---------------cCchhhh------cCCCEEEEC
Confidence 68999999999999999999999999999998865431 110 1223343 368999866
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeC
Q 022250 114 TDASTVYDNVKQATAFGMRSVVYV 137 (300)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigT 137 (300)
.+.....+.+..+.+.|+.||-=+
T Consensus 58 lp~~~s~~~~~~~~~~g~~VIDlS 81 (313)
T PRK11863 58 LPDDAAREAVALIDNPATRVIDAS 81 (313)
T ss_pred CCHHHHHHHHHHHHhCCCEEEECC
Confidence 666777888898889999776433
No 75
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.82 E-value=9.5e-05 Score=70.46 Aligned_cols=100 Identities=16% Similarity=0.092 Sum_probs=70.5
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCCCCccee-cCHHHHHhcccccCCccEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVM-SDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVI 111 (300)
||+||+|+|++|-.|-.+++.+..+|++|+..+..+...|+...+..- ...-...+.. -|.+++.. .++|||+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~-----~~~DvvF 75 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIEL-----DECDVVF 75 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhc-----ccCCEEE
Confidence 589999999999999999999999999996555544435665544320 0000111121 23344432 4689999
Q ss_pred EcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250 112 DFTDASTVYDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTT 138 (300)
-+++.....+.+...++.|+.||=-++
T Consensus 76 lalPhg~s~~~v~~l~~~g~~VIDLSa 102 (349)
T COG0002 76 LALPHGVSAELVPELLEAGCKVIDLSA 102 (349)
T ss_pred EecCchhHHHHHHHHHhCCCeEEECCc
Confidence 888889999999999999999775444
No 76
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.79 E-value=0.00015 Score=67.32 Aligned_cols=119 Identities=9% Similarity=0.048 Sum_probs=75.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCcCCC-CcceecCHHHHHhcccccCCccEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVV 110 (300)
|+||+|+|+ |.||+.+++.+.+... .+++. ++++.. .....+. ..+ ++.++.|.++++. ++|+|
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~-~~r~~~-~~~~~l~---~~~~~~~~~~~~~e~~~------~aDvV 68 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIIL-YSSSKN-EHFNQLY---DKYPTVELADNEAEIFT------KCDHS 68 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEE-EeCCcH-HHHHHHH---HHcCCeEEeCCHHHHHh------hCCEE
Confidence 478999998 9999999999876531 46654 343210 1111121 122 3455677777763 78999
Q ss_pred EEcCCchhHHHHHHHH---HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE-EcCCCcHHHH
Q 022250 111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSI 170 (300)
Q Consensus 111 IDfT~p~~~~~~~~~a---l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv-~a~N~SiGv~ 170 (300)
|-+.+|..+.+.+..+ +..++.+|+-.-|.+.+++++ .... .+++ .=||...-+.
T Consensus 69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~--~~vvR~MPN~~~~~g 127 (277)
T PRK06928 69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG--LQVSRLIPSLTSAVG 127 (277)
T ss_pred EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC--CCEEEEeCccHHHHh
Confidence 9899998888877755 345666776566998766544 3322 2333 3477766554
No 77
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.78 E-value=0.00034 Score=65.64 Aligned_cols=115 Identities=13% Similarity=0.063 Sum_probs=69.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
|||+|+|+ |+||..+++.+.+ .+++++. +|++. .....+. +.++....+++++.+. ...+|+|+-+.+
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~-~g~~V~~-~dr~~--~~~~~l~----~~g~~~~~s~~~~~~~---~~~~dvIi~~vp 68 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAK-RGHDCVG-YDHDQ--DAVKAMK----EDRTTGVANLRELSQR---LSAPRVVWVMVP 68 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----HcCCcccCCHHHHHhh---cCCCCEEEEEcC
Confidence 48999997 9999999998875 5788765 78653 2222232 2344445677666531 136899997777
Q ss_pred chhHHHHHHHH---HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250 116 ASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (300)
Q Consensus 116 p~~~~~~~~~a---l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~ 163 (300)
+..+.+.+... ++.|.-+|..+|+... ...++.+.+++.++..+=+|
T Consensus 69 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~-~t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 69 HGIVDAVLEELAPTLEKGDIVIDGGNSYYK-DSLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred chHHHHHHHHHHhhCCCCCEEEECCCCCcc-cHHHHHHHHHhcCCeEEecC
Confidence 76555555443 3455545555555433 33344444555666655443
No 78
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.77 E-value=0.00013 Score=63.93 Aligned_cols=91 Identities=21% Similarity=0.303 Sum_probs=68.8
Q ss_pred CcceEEEEcCCchHHHHHHHHH-HhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAV-TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i-~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVV 110 (300)
.|.+|+|+|+ |++|++++..- .+..++++++++|.+. +..|. .-.+++++ ++++..+++ .+.|+.
T Consensus 83 ~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~------~~VG~-~~~~v~V~~~d~le~~v~~----~dv~ia 150 (211)
T COG2344 83 KTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDP------DKVGT-KIGDVPVYDLDDLEKFVKK----NDVEIA 150 (211)
T ss_pred cceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCH------HHhCc-ccCCeeeechHHHHHHHHh----cCccEE
Confidence 3689999999 99999999865 3467899999999653 12222 22357776 588888863 578899
Q ss_pred EEcCCchhHHHHHHHHHHcCCCEEEe
Q 022250 111 IDFTDASTVYDNVKQATAFGMRSVVY 136 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVig 136 (300)
|-+.+.+.+.+.+....++|+.-+.-
T Consensus 151 iLtVPa~~AQ~vad~Lv~aGVkGIlN 176 (211)
T COG2344 151 ILTVPAEHAQEVADRLVKAGVKGILN 176 (211)
T ss_pred EEEccHHHHHHHHHHHHHcCCceEEe
Confidence 96766677788899999999876654
No 79
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.77 E-value=0.0003 Score=68.15 Aligned_cols=120 Identities=10% Similarity=0.101 Sum_probs=74.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCcCCCCcceec--CHHHHHhcccccCCccE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV 109 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DV 109 (300)
|+||+|+|+||-.|+.+++.++++++++ |+. +.+...|.....+.| ....+.+ |.++ + .++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g----~~~~v~~~~~~~~-~------~~~Di 68 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGG----KEGTLQDAFDIDA-L------KKLDI 68 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCC----CcceEEecCChhH-h------cCCCE
Confidence 5899999999999999999888889998 777 444333333322222 1223333 2333 3 36898
Q ss_pred EEEcCCchhHHHHHHHHHHcCCC-EEEeCC--------------CCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250 110 VIDFTDASTVYDNVKQATAFGMR-SVVYVP--------------HIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (300)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~-vVigTT--------------G~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ 170 (300)
++=+...+...+.+..+.++|++ +||--+ .+++++ |.. ..+.|+.++..||=+.-..
T Consensus 69 vf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~---i~~-~~~~g~~iIanPnC~tt~~ 140 (369)
T PRK06598 69 IITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDV---IDD-ALANGVKTFVGGNCTVSLM 140 (369)
T ss_pred EEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHH---HHh-hhhcCCCEEEcCChHHHHH
Confidence 88334555568888889999986 444433 233433 443 3235556777888665543
No 80
>PRK07680 late competence protein ComER; Validated
Probab=97.77 E-value=0.00023 Score=65.75 Aligned_cols=99 Identities=10% Similarity=0.157 Sum_probs=64.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCcCCC-CcceecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
|||+|+|+ |.||+.+++.+.+...+ +-+.+++++. .....+. ..+ ++.++.+.++++. ++|+||-
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~---~~~~g~~~~~~~~~~~~------~aDiVil 68 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIK---ERYPGIHVAKTIEEVIS------QSDLIFI 68 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHH---HHcCCeEEECCHHHHHH------hCCEEEE
Confidence 47999998 99999999998765322 3355677643 2222222 122 5677788888774 7899998
Q ss_pred cCCchhHHHHHHHHHH---cCCCEEEeCC-CCCHHHHHH
Q 022250 113 FTDASTVYDNVKQATA---FGMRSVVYVP-HIQLETVSA 147 (300)
Q Consensus 113 fT~p~~~~~~~~~al~---~G~~vVigTT-G~~~e~~~~ 147 (300)
++.|....+.+..... .+. +|+-.+ |.+.++++.
T Consensus 69 av~p~~~~~vl~~l~~~l~~~~-~iis~~ag~~~~~L~~ 106 (273)
T PRK07680 69 CVKPLDIYPLLQKLAPHLTDEH-CLVSITSPISVEQLET 106 (273)
T ss_pred ecCHHHHHHHHHHHHhhcCCCC-EEEEECCCCCHHHHHH
Confidence 8888887777765433 344 454444 676554433
No 81
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.76 E-value=0.0002 Score=60.94 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=74.0
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-C-------CcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-V-------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA 108 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~-------g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D 108 (300)
||+|+|+ |.||.+++..+... +.++. .+.++. . +.....+.+..-+..+.+++|++++++ ++|
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~-g~~V~-l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~------~ad 71 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADN-GHEVT-LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE------DAD 71 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHC-TEEEE-EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT------T-S
T ss_pred CEEEECc-CHHHHHHHHHHHHc-CCEEE-EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC------ccc
Confidence 7999998 99999999988754 45443 344321 0 000011111111235667899999984 789
Q ss_pred EEEEcCCchhHHHHHHHH---HHcCCCEEEeCCCCCHH----HHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250 109 VVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE----TVSALSAFCDKASMGCLIAPTLSIGS 169 (300)
Q Consensus 109 VVIDfT~p~~~~~~~~~a---l~~G~~vVigTTG~~~e----~~~~L~~~a~~~~i~iv~a~N~SiGv 169 (300)
++|-.++...+.+.++.. ++.+.++|+-+-|+... --+.+.+......+.++-.|||.--+
T Consensus 72 ~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei 139 (157)
T PF01210_consen 72 IIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEI 139 (157)
T ss_dssp EEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHH
T ss_pred EEEecccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHH
Confidence 999777777776666544 45788888877788321 12345666655558888999987543
No 82
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.76 E-value=0.00034 Score=64.98 Aligned_cols=120 Identities=11% Similarity=0.097 Sum_probs=74.9
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV 110 (300)
|.+||+++|+ |+||+.+++.+.+.. ..++. ++|++. ..+..+. .++|+.++++.++++. ++|+|
T Consensus 1 ~~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~-v~~r~~--~~~~~l~---~~~g~~~~~~~~e~~~------~aDiI 67 (272)
T PRK12491 1 MNKQIGFIGC-GNMGIAMIGGMINKNIVSPDQII-CSDLNV--SNLKNAS---DKYGITITTNNNEVAN------SADIL 67 (272)
T ss_pred CCCeEEEECc-cHHHHHHHHHHHHCCCCCCceEE-EECCCH--HHHHHHH---HhcCcEEeCCcHHHHh------hCCEE
Confidence 4468999998 999999999987642 22444 456542 2222222 2356667778878774 78999
Q ss_pred EEcCCchhHHHHHHHHHHc--CCCEEEeC-CCCCHHHHHHHHHHhhhCCCeE-EEcCCCcHHHH
Q 022250 111 IDFTDASTVYDNVKQATAF--GMRSVVYV-PHIQLETVSALSAFCDKASMGC-LIAPTLSIGSI 170 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~--G~~vVigT-TG~~~e~~~~L~~~a~~~~i~i-v~a~N~SiGv~ 170 (300)
|-+..|....+.+...... +..+||-. .|.+-+++++ ..... .++ -.-||...-+.
T Consensus 68 iLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~-~~vvR~MPN~~~~vg 127 (272)
T PRK12491 68 ILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRK-LKVIRVMPNTPVLVG 127 (272)
T ss_pred EEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCC-CcEEEECCChHHHHc
Confidence 9888998888777654432 23455544 4898766544 33221 223 34577766443
No 83
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=97.74 E-value=0.00019 Score=69.76 Aligned_cols=121 Identities=12% Similarity=0.070 Sum_probs=75.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEE-ecCC--C-------Cc---------chhhhhcCcCCCCccee---
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI-DSHS--V-------GE---------DIGMVCDMEQPLEIPVM--- 91 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~v-d~~~--~-------g~---------d~~~~~g~~~~~gv~v~--- 91 (300)
|.||+|+|+||.+|+.+++.+.+.| .++++++. +.+. . +. ...++-......++.++
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 4689999999999999999998776 69999987 3211 0 00 00000000001122232
Q ss_pred cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC-CCCCHHHHHHHHHHhhhCCCeEE
Q 022250 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCL 160 (300)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT-TG~~~e~~~~L~~~a~~~~i~iv 160 (300)
+.+.++++ ..++|+|+....-.+..+....|+++|++|.+.. .-+- ..-..|.+++++++..++
T Consensus 81 ~~~~~l~~----~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV-~aG~~i~~~a~~~g~~i~ 145 (385)
T PRK05447 81 EGLCELAA----LPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLV-CAGELVMDAAKKSGAQIL 145 (385)
T ss_pred hHHHHHhc----CCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHH-hhHHHHHHHHHHcCCeEE
Confidence 24445554 3568999988887777888999999999999843 2111 223446666666665544
No 84
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=97.74 E-value=0.00034 Score=66.50 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=93.2
Q ss_pred ceEEEEcCCchHHHHHHHHHH---hc-------------------CCcEEEEEEec--CCCCcchhhhhcCc--------
Q 022250 36 IKVIINGAVKEIGRAAVIAVT---KA-------------------RGMEVAGAIDS--HSVGEDIGMVCDME-------- 83 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~---~~-------------------~~~eLvg~vd~--~~~g~d~~~~~g~~-------- 83 (300)
+||+|+|. |+-.+.+++-+. +. .|+|+|+++|- .+.|+|+.+..-..
T Consensus 1 irvai~Gv-GncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~pN~t~~~~ 79 (351)
T TIGR03450 1 VRVAIVGV-GNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIA 79 (351)
T ss_pred CeEEEEec-cHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcCCCCceeee
Confidence 69999998 999999998652 11 16699999985 56788876644211
Q ss_pred --CCCCccee-----c------------------CHHHHHhcccccCCccEEEEcCC---chhHHHHHHHHHHcCCCEEE
Q 022250 84 --QPLEIPVM-----S------------------DLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRSVV 135 (300)
Q Consensus 84 --~~~gv~v~-----~------------------dl~~~l~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~~vVi 135 (300)
.++|+.+. + |+-+.|. +.++||+|.+-+ -++..-++..|++.|++.|-
T Consensus 80 ~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk----~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN 155 (351)
T TIGR03450 80 DVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALK----DAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVN 155 (351)
T ss_pred ccCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHH----hcCCCEEEECCccchHHHHHHHHHHHHHcCCceEe
Confidence 12233322 1 2333343 478999999853 56677788999999999999
Q ss_pred eCCCCCHHHHHHHHHHhhhCCCeEEEcCCC-c-HHHHHHHHH-HHHh
Q 022250 136 YVPHIQLETVSALSAFCDKASMGCLIAPTL-S-IGSILLQQA-AISA 179 (300)
Q Consensus 136 gTTG~~~e~~~~L~~~a~~~~i~iv~a~N~-S-iGv~ll~~~-a~~~ 179 (300)
+||-+.. ...++.+.++++++|+ ..--+ | +|..++... +..+
T Consensus 156 ~~P~~ia-~~p~~a~~f~e~glPi-~GDD~Ksq~GaTi~h~vLa~lf 200 (351)
T TIGR03450 156 ALPVFIA-SDPEWAKKFTDAGVPI-VGDDIKSQVGATITHRVLAKLF 200 (351)
T ss_pred ccCcccc-CCHHHHHHHHHCCCCE-ecccccccCCCchHHHHHHHHH
Confidence 9996543 2245777788899984 34444 3 788888664 4444
No 85
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.73 E-value=0.00017 Score=69.13 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=67.6
Q ss_pred CcceEEEEcCCchHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (300)
+++||+|+|+||-.|+.+++.+.+ .|..+|..+......|+... +.+ ..+++. ++++..- .++|+++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~----~~~~v~-~~~~~~~-----~~~Dvvf 71 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGG----KSVTVQ-DAAEFDW-----SQAQLAF 71 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECC----cceEEE-eCchhhc-----cCCCEEE
Confidence 468999999999999999999998 79999998866555666554 211 134443 4444321 3689998
Q ss_pred EcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250 112 DFTDASTVYDNVKQATAFGMRSVVYV 137 (300)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigT 137 (300)
=+++.....+.+..+.++|+.||-=+
T Consensus 72 ~a~p~~~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 72 FVAGREASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEECC
Confidence 55566667889999999999877443
No 86
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=97.73 E-value=9.2e-05 Score=70.94 Aligned_cols=196 Identities=18% Similarity=0.159 Sum_probs=106.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcch----------hhhhc--C---c------CCCCccee--
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI----------GMVCD--M---E------QPLEIPVM-- 91 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~----------~~~~g--~---~------~~~gv~v~-- 91 (300)
++||+|+|+ ||||+.+++.+.+.++++|+++.|+....+.. |.+-+ + . ....+.++
T Consensus 5 ~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEc
Confidence 689999998 99999999999888999999999842100000 00100 0 0 00012222
Q ss_pred cCHHHH-HhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC----------CCCCHHHHHHHHHHhhhCCCeEE
Q 022250 92 SDLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV----------PHIQLETVSALSAFCDKASMGCL 160 (300)
Q Consensus 92 ~dl~~~-l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT----------TG~~~e~~~~L~~~a~~~~i~iv 160 (300)
+|.+++ .. +.++|+|+++|-.....+.+...+++|...|+=+ +|.+.++++ .+ -.++
T Consensus 84 ~~p~~~~w~----~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~------~~--~~II 151 (338)
T PLN02358 84 RNPEDIPWG----EAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYK------SD--LDIV 151 (338)
T ss_pred CCcccCccc----ccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhC------CC--CCEE
Confidence 223332 11 1478999999999999999999999997555443 234444322 12 2334
Q ss_pred EcCCCcHHHHHHHHHHHHhccCC--CCeEEEEccC----C-CCCCCchHHHHHHHHHHh--cCCccccCccccccccccc
Q 022250 161 IAPTLSIGSILLQQAAISASFHY--KNVEIVESRP----N-ARDFPSPDATQIANNLSN--LGQIYNREDISTDVKARGQ 231 (300)
Q Consensus 161 ~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~Hh----~-K~DaPSGTA~~l~~~i~~--~~~~~~r~~~~~~~~~rg~ 231 (300)
+|=|--.|-|.-+++.+.+.+ ...-+.-.|- + -.|.|+..-+..+..++. .+...+-. ..-+.
T Consensus 152 --SnasCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaa------ka~~k 223 (338)
T PLN02358 152 --SNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA------KAVGK 223 (338)
T ss_pred --ECCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchh------hhhhh
Confidence 566666676666666654322 2233444463 2 357776433322232222 11110000 00011
Q ss_pred ccc--CCCeeEEEEEcCCCCee
Q 022250 232 VLG--EDGVRVHSMVLPGLPSS 251 (300)
Q Consensus 232 ~~~--~~~i~i~s~R~g~ivg~ 251 (300)
++. +..+..+++|.|-..|+
T Consensus 224 IlP~l~gkl~g~avRVPv~~gs 245 (338)
T PLN02358 224 VLPSLNGKLTGMSFRVPTVDVS 245 (338)
T ss_pred ccccCCCcEEEEEEEeeEcCee
Confidence 111 13488889999887663
No 87
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.72 E-value=0.00047 Score=64.20 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=71.6
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCc
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p 116 (300)
||+|+|+ |.||+.+++.+.+ .++++. ++|++. .....+. ..|....++.+++++ ++|+||.+.+.
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAK-AGYQLH-VTTIGP--EVADELL----AAGAVTAETARQVTE------QADVIFTMVPD 65 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCcccCCHHHHHh------cCCEEEEecCC
Confidence 6999997 9999999998875 578876 567643 2222222 345555678888874 78999976654
Q ss_pred hhHH-HHH---HHHH---HcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250 117 STVY-DNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (300)
Q Consensus 117 ~~~~-~~~---~~al---~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~ 163 (300)
.... +.+ ..++ ..|. +|+-++..++...++|.+.+++.++.++-+|
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~-iivd~st~~~~~~~~l~~~l~~~g~~~~~~p 118 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGK-TLVDMSSISPIESKRFAKAVKEKGIDYLDAP 118 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence 4333 332 1122 2333 4444455556666778888887788877766
No 88
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.70 E-value=0.00011 Score=70.19 Aligned_cols=99 Identities=21% Similarity=0.208 Sum_probs=65.7
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-C-------------CCcchhhhh--c----CcCCCCccee--
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S-------------VGEDIGMVC--D----MEQPLEIPVM-- 91 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~-------------~g~d~~~~~--g----~~~~~gv~v~-- 91 (300)
|++||+|+|. ||+||.+.+.+.+.+++|+|++-|+. . .|+--+++. + + ....++++
T Consensus 1 m~~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i-~g~~i~~~~~ 78 (337)
T PTZ00023 1 MVVKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMI-GSKKVHVFFE 78 (337)
T ss_pred CceEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEE-CCeEEEEEeC
Confidence 5689999998 99999999998877899999986621 0 011000000 0 0 00123333
Q ss_pred cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (300)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (300)
.|++++-= .+.++|+|+++|......+.+..++++|...|+=+
T Consensus 79 ~dp~~lpW---~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iS 121 (337)
T PTZ00023 79 KDPAAIPW---GKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMS 121 (337)
T ss_pred CChhhCCc---cccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeC
Confidence 34544420 12479999999988888999999999998777654
No 89
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.69 E-value=7.5e-05 Score=71.70 Aligned_cols=126 Identities=15% Similarity=0.167 Sum_probs=76.9
Q ss_pred eEEEEcCCchHHHHHHHHHHhcC-------CcEEEEEEecC-------------CCCcchhhhhcCcCCCCcceecCHHH
Q 022250 37 KVIINGAVKEIGRAAVIAVTKAR-------GMEVAGAIDSH-------------SVGEDIGMVCDMEQPLEIPVMSDLTM 96 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~-------~~eLvg~vd~~-------------~~g~d~~~~~g~~~~~gv~v~~dl~~ 96 (300)
||+|+|+ |.+|.+++..+.... +.++.- +.++ ........+.|..-+.++..++|+++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~e 78 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRM-WVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVE 78 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEE-EEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHH
Confidence 6999998 999999999887532 033332 2220 00011111223211234567789999
Q ss_pred HHhcccccCCccEEEEcCCchhHHHHHHHH---HHcCCCEEEeCCCCCHH--HHHHHHHHhh---hCCCeEEEcCCCcHH
Q 022250 97 VLGSISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE--TVSALSAFCD---KASMGCLIAPTLSIG 168 (300)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTTG~~~e--~~~~L~~~a~---~~~i~iv~a~N~SiG 168 (300)
+++ ++|++|-..++....+.+... ++.+.++|+.|-|+..+ ....+.+..+ ...+.++..|||+.-
T Consensus 79 al~------~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~E 152 (342)
T TIGR03376 79 AAK------GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANE 152 (342)
T ss_pred HHh------cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHH
Confidence 984 789998777776666655543 45577788877798765 3223222222 234777899999887
Q ss_pred HH
Q 022250 169 SI 170 (300)
Q Consensus 169 v~ 170 (300)
+.
T Consensus 153 va 154 (342)
T TIGR03376 153 VA 154 (342)
T ss_pred HH
Confidence 64
No 90
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.69 E-value=0.00027 Score=67.90 Aligned_cols=94 Identities=15% Similarity=0.090 Sum_probs=65.0
Q ss_pred CCCcceEEEEcCCchHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHH-HHHhcccccCCcc
Q 022250 32 PQSNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARA 108 (300)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~D 108 (300)
+.+++||+|+|+||..|+.+++.+.+ +|..+|..+......|+.... -| ..+.+ .+++ +.+ .++|
T Consensus 4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~~----~~~~v-~~~~~~~~------~~~D 71 (344)
T PLN02383 4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-EG----RDYTV-EELTEDSF------DGVD 71 (344)
T ss_pred cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-cC----ceeEE-EeCCHHHH------cCCC
Confidence 34568999999999999999999987 788999887665555554432 11 11222 2222 334 3689
Q ss_pred EEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250 109 VVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (300)
Q Consensus 109 VVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (300)
+|+=+...+...+.+..+.+.|+.||-=+
T Consensus 72 ~vf~a~p~~~s~~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 72 IALFSAGGSISKKFGPIAVDKGAVVVDNS 100 (344)
T ss_pred EEEECCCcHHHHHHHHHHHhCCCEEEECC
Confidence 99844455666888888889998877543
No 91
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.67 E-value=0.00042 Score=67.14 Aligned_cols=129 Identities=17% Similarity=0.147 Sum_probs=79.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC------CcEEE-EEEecCCCC-----------cchhhhhcCcCCCCcceecCHHH
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVA-GAIDSHSVG-----------EDIGMVCDMEQPLEIPVMSDLTM 96 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLv-g~vd~~~~g-----------~d~~~~~g~~~~~gv~v~~dl~~ 96 (300)
++||+|+|+ |.+|.+++..+.+.. +.++. ...+....+ .+...+-|+.-+.++..++|+++
T Consensus 11 ~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 11 PLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 489999998 999999999987652 13332 222221001 11112223322335666889998
Q ss_pred HHhcccccCCccEEEEcCCchhHHHHHHHHHH-----cCCCEEEeCCCCCHHHH--HHHHHHhh---hCCCeEEEcCCCc
Q 022250 97 VLGSISQSKARAVVIDFTDASTVYDNVKQATA-----FGMRSVVYVPHIQLETV--SALSAFCD---KASMGCLIAPTLS 166 (300)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~-----~G~~vVigTTG~~~e~~--~~L~~~a~---~~~i~iv~a~N~S 166 (300)
+++ ++|+||-..+|....+.+..... .+..+|+.+-|++.+.. ..+.+..+ ...+.++..|||+
T Consensus 90 av~------~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A 163 (365)
T PTZ00345 90 AVE------DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVA 163 (365)
T ss_pred HHh------cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHH
Confidence 884 78999978888888777766543 24456667768764331 22222222 1347778999999
Q ss_pred HHHH
Q 022250 167 IGSI 170 (300)
Q Consensus 167 iGv~ 170 (300)
-=+.
T Consensus 164 ~Eva 167 (365)
T PTZ00345 164 NDVA 167 (365)
T ss_pred HHHH
Confidence 8874
No 92
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.67 E-value=0.00024 Score=69.22 Aligned_cols=98 Identities=12% Similarity=0.171 Sum_probs=62.8
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCcCCCCcceecCHHHH-HhcccccCCccEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMSDLTMV-LGSISQSKARAVVI 111 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~~~~gv~v~~dl~~~-l~~~~~~~~~DVVI 111 (300)
+++||+|+|+||..|+.+++.+.++|+++|+.+......|+...... .+ .....+...+++.. + .++|+|+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l-~~~~~~~~~~~~~~~~------~~~DvVf 109 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHL-ITQDLPNLVAVKDADF------SDVDAVF 109 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccc-cCccccceecCCHHHh------cCCCEEE
Confidence 57899999999999999999999999999999876544444332111 00 00112212233322 3 3689998
Q ss_pred EcCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250 112 DFTDASTVYDNVKQATAFGMRSVVYVPH 139 (300)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigTTG 139 (300)
=+...+...+.+.. ++.|+.||-=++.
T Consensus 110 ~Alp~~~s~~i~~~-~~~g~~VIDlSs~ 136 (381)
T PLN02968 110 CCLPHGTTQEIIKA-LPKDLKIVDLSAD 136 (381)
T ss_pred EcCCHHHHHHHHHH-HhCCCEEEEcCch
Confidence 44444555666666 5788777755543
No 93
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.65 E-value=0.00084 Score=62.96 Aligned_cols=117 Identities=16% Similarity=0.168 Sum_probs=77.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
|||+++|. |+||+.+++.+.+ .++++. ++|++. +...+. ..|....++..++.+ .+|+||-+.+
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~-~G~~v~-v~~~~~---~~~~~~----~~g~~~~~s~~~~~~------~advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLAR-AGHQLH-VTTIGP---VADELL----SLGAVSVETARQVTE------ASDIIFIMVP 64 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHH-CCCeEE-EEeCCH---hHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence 38999997 9999999999875 567765 566542 122232 345666778888763 7899986654
Q ss_pred ch-hHHHHHHH---HH---HcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250 116 AS-TVYDNVKQ---AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (300)
Q Consensus 116 p~-~~~~~~~~---al---~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ 170 (300)
.+ .+.+.+.. .+ ..| .+|+-++..+++..+++.+.+++.|+..+=+| +|=|..
T Consensus 65 ~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP-VsGg~~ 124 (292)
T PRK15059 65 DTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAP-VSGGEI 124 (292)
T ss_pred ChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEec-CCCCHH
Confidence 43 33443311 12 223 46666777778888889888888888877766 444543
No 94
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.65 E-value=0.00075 Score=63.85 Aligned_cols=123 Identities=16% Similarity=0.222 Sum_probs=72.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhhcCcCCCCcceecCHHHHHhcccccCCc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--------g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (300)
|||+|+|+ |.||..++..+.+ .+.++. +++++.. +.....+.+...+.++.+++|+++.+. .++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~-~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~ 72 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSS-KKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-----DNA 72 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-----CCC
Confidence 48999998 9999999998875 456664 5665310 000000111111224557788887763 478
Q ss_pred cEEEEcCCchhHHHHHHHHHH----cCCCEEEeCCCCCHHH----HHHHHHHhhhCCCeEEEcCCCc
Q 022250 108 AVVIDFTDASTVYDNVKQATA----FGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 108 DVVIDfT~p~~~~~~~~~al~----~G~~vVigTTG~~~e~----~~~L~~~a~~~~i~iv~a~N~S 166 (300)
|++|-++.+..+.+.++.... .+.++|+-+-|+..+. .+.|.+..-...+.++-.|++.
T Consensus 73 Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a 139 (326)
T PRK14620 73 TCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFA 139 (326)
T ss_pred CEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHH
Confidence 999988888777777765544 3456777666874311 1234444322223344477754
No 95
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.63 E-value=7.9e-05 Score=61.71 Aligned_cols=93 Identities=19% Similarity=0.238 Sum_probs=51.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
.+||+|+|+ ||+|+.+.+++.+ .++++++++.++. ....... ...+-..+.++++++ .++|+++ .|
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~-ag~~v~~v~srs~--~sa~~a~---~~~~~~~~~~~~~~~------~~aDlv~-ia 75 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALAR-AGHEVVGVYSRSP--ASAERAA---AFIGAGAILDLEEIL------RDADLVF-IA 75 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHH-TTSEEEEESSCHH---HHHHHH---C--TT-----TTGGG------CC-SEEE-E-
T ss_pred ccEEEEECC-CHHHHHHHHHHHH-CCCeEEEEEeCCc--ccccccc---ccccccccccccccc------ccCCEEE-EE
Confidence 699999998 9999999998874 6899999887543 1112222 112222334667776 4789998 55
Q ss_pred CchhH-HHHHHHHHHc----CCCEEEeCCCCC
Q 022250 115 DASTV-YDNVKQATAF----GMRSVVYVPHIQ 141 (300)
Q Consensus 115 ~p~~~-~~~~~~al~~----G~~vVigTTG~~ 141 (300)
.||.. .+........ .=.+|+=|.|-.
T Consensus 76 vpDdaI~~va~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 76 VPDDAIAEVAEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp S-CCHHHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred echHHHHHHHHHHHHhccCCCCcEEEECCCCC
Confidence 55555 4455554444 124777777744
No 96
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=97.62 E-value=0.00016 Score=69.03 Aligned_cols=132 Identities=21% Similarity=0.156 Sum_probs=80.5
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhh------hcCcCCCCccee--c
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMV------CDMEQPLEIPVM--S 92 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~------~g~~~~~gv~v~--~ 92 (300)
|++||+|+|. ||+||.+.+.+.+.+++|+|++=|... .|+--+++ +-. ....+.++ .
T Consensus 1 m~~~i~inGf-GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v-~g~~I~v~~~~ 78 (331)
T PRK15425 1 MTIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIV-NGKKIRVTAER 78 (331)
T ss_pred CceEEEEEee-ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEE-CCeEEEEEEcC
Confidence 4589999998 999999999988778999999876210 01100000 000 00123333 2
Q ss_pred CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCC-----------CCHHHHHHHHHHhhhCCCeEEE
Q 022250 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH-----------IQLETVSALSAFCDKASMGCLI 161 (300)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG-----------~~~e~~~~L~~~a~~~~i~iv~ 161 (300)
+++++-= .+.++|+|+++|-.....+.+...+++|...|+=+.- .+.+ .+ ..+ .++
T Consensus 79 dp~~~~w---~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~---~~---~~~---~II- 145 (331)
T PRK15425 79 DPANLKW---DEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFD---KY---AGQ---DIV- 145 (331)
T ss_pred ChhhCcc---cccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHH---Hc---CCC---CEE-
Confidence 4554321 0137899999998888899999999999777765422 2222 12 111 333
Q ss_pred cCCCcHHHHHHHHHHHHhcc
Q 022250 162 APTLSIGSILLQQAAISASF 181 (300)
Q Consensus 162 a~N~SiGv~ll~~~a~~~~~ 181 (300)
+|=|--.|-|.-+++.+-+
T Consensus 146 -SnaSCtTn~Lapvlk~L~~ 164 (331)
T PRK15425 146 -SNASCTTNCLAPLAKVIND 164 (331)
T ss_pred -ECCCcHHHHHHHHHHHHHH
Confidence 6667777766666666643
No 97
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.61 E-value=0.00085 Score=62.91 Aligned_cols=116 Identities=10% Similarity=0.104 Sum_probs=75.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
|.||+++|. |.||..+++.+.+ .++++. ++|++. .....+. ..++....+.+++++ .+|+||-+.
T Consensus 1 m~~Ig~IGl-G~mG~~mA~~l~~-~G~~V~-v~d~~~--~~~~~~~----~~g~~~~~s~~~~~~------~aDvVi~~v 65 (296)
T PRK15461 1 MAAIAFIGL-GQMGSPMASNLLK-QGHQLQ-VFDVNP--QAVDALV----DKGATPAASPAQAAA------GAEFVITML 65 (296)
T ss_pred CCeEEEEee-CHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEec
Confidence 358999997 9999999999875 467764 577643 2223332 235556678888774 789999777
Q ss_pred CchhHHH-HHH------HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250 115 DASTVYD-NVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 115 ~p~~~~~-~~~------~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S 166 (300)
+++...+ .+. .++..|. +|+-++..+++..+++.+..++.++..+=+|-+.
T Consensus 66 p~~~~~~~vl~~~~~i~~~l~~g~-lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g 123 (296)
T PRK15461 66 PNGDLVRSVLFGENGVCEGLSRDA-LVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR 123 (296)
T ss_pred CCHHHHHHHHcCcccHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCC
Confidence 6664333 321 1123343 4455555566777888888888888877677654
No 98
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.58 E-value=0.00059 Score=62.78 Aligned_cols=93 Identities=8% Similarity=0.035 Sum_probs=62.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
|||+|+|+ |.||..+++.+.+... -++.+ ++++. ...++....+.+++++ ++|+||-
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~-~~~~~------------~~~~~~~~~~~~~~~~------~~D~Vil 63 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYY-HTPSK------------KNTPFVYLQSNEELAK------TCDIIVL 63 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEE-ECCCh------------hcCCeEEeCChHHHHH------hCCEEEE
Confidence 68999998 9999999999986532 23433 34322 0122334456666663 7899999
Q ss_pred cCCchhHHHHHHHHHH--cCCCEEEeCCCCCHHHHHHH
Q 022250 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSAL 148 (300)
Q Consensus 113 fT~p~~~~~~~~~al~--~G~~vVigTTG~~~e~~~~L 148 (300)
++.|....+.+..... .+..+|+-..|.+.++++.+
T Consensus 64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~ 101 (260)
T PTZ00431 64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEM 101 (260)
T ss_pred EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHH
Confidence 9999988887776543 24456666668887665554
No 99
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=97.57 E-value=0.00022 Score=68.39 Aligned_cols=98 Identities=21% Similarity=0.219 Sum_probs=66.0
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhh--c----CcCCCCccee--c
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVC--D----MEQPLEIPVM--S 92 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~~--g----~~~~~gv~v~--~ 92 (300)
|++||+|+|+ ||+||.+.+.+.+.+++|+|++=|... .|+--+++. | . ....++++ .
T Consensus 1 m~~ki~INGf-GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v-~g~~I~v~~~~ 78 (343)
T PRK07729 1 MKTKVAINGF-GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLV-DGKKIRLLNNR 78 (343)
T ss_pred CceEEEEECc-ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEE-CCEEEEEEEcC
Confidence 5689999998 999999999988778999999866210 111000000 0 0 00123333 2
Q ss_pred CHHHHHhcccc-cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250 93 DLTMVLGSISQ-SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (300)
Q Consensus 93 dl~~~l~~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (300)
|++++- | +.++|+|+++|-.....+.+..++++|..+|+=+
T Consensus 79 dp~~~~----W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS 120 (343)
T PRK07729 79 DPKELP----WTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILT 120 (343)
T ss_pred ChhhCc----ccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeC
Confidence 454431 2 1479999999999999999999999998777655
No 100
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.57 E-value=0.00047 Score=63.94 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=79.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
|+||+++|+ |+||++++.-+.+...+ +-+-+.++.. .....+. ..+|+.+++|.+++. ...|+|+-
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~--e~~~~l~---~~~g~~~~~~~~~~~------~~advv~L 68 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSE--EKRAALA---AEYGVVTTTDNQEAV------EEADVVFL 68 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCH--HHHHHHH---HHcCCcccCcHHHHH------hhCCEEEE
Confidence 579999998 99999999999876522 3344555432 1111233 456776666776776 47899999
Q ss_pred cCCchhHHHHHHHHH--HcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE-EcCCCcHHH
Q 022250 113 FTDASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGS 169 (300)
Q Consensus 113 fT~p~~~~~~~~~al--~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv-~a~N~SiGv 169 (300)
...|....+.+.... ..++.+|+=.-|.+-++++.+ .-. .+++ .=||..--+
T Consensus 69 avKPq~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~---l~~--~~vvR~MPNt~a~v 123 (266)
T COG0345 69 AVKPQDLEEVLSKLKPLTKDKLVISIAAGVSIETLERL---LGG--LRVVRVMPNTPALV 123 (266)
T ss_pred EeChHhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHH---cCC--CceEEeCCChHHHH
Confidence 999998888887775 467777777779987665444 322 3444 337765433
No 101
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=97.57 E-value=0.00026 Score=67.60 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=78.3
Q ss_pred eEEEEcCCchHHHHHHHHHHhc---CCcEEEEEEecCCC-------------Ccc------hhhhhcCcCCCCccee--c
Q 022250 37 KVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSV-------------GED------IGMVCDMEQPLEIPVM--S 92 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~-------------g~d------~~~~~g~~~~~gv~v~--~ 92 (300)
||+|+|+ ||+||.+.+++.+. ++++++++.|.... |+- .+..+-. ....+.++ .
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v-~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHV-NGDCIRVLHSP 78 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEE-CCeEEEEEEcC
Confidence 6999998 99999999998865 46999998873210 000 0000000 00123333 2
Q ss_pred CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEE-EeCCC-CCHHH--HHHH--HHHhhhCCCeEEEcCCCc
Q 022250 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSV-VYVPH-IQLET--VSAL--SAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vV-igTTG-~~~e~--~~~L--~~~a~~~~i~iv~a~N~S 166 (300)
+++++-= .+.++|+|+++|.+..+.+.+..++++|..+| +..|. .+.+. ...+ +.+..+ -.++ +|=|
T Consensus 79 ~p~~~~w---~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~--~~II--Snas 151 (325)
T TIGR01532 79 TPEALPW---RALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAE--HTIV--SNAS 151 (325)
T ss_pred Chhhccc---cccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCC--CCEE--eCCC
Confidence 4444320 02479999999999999999999999995555 54441 11110 0000 112112 2344 6667
Q ss_pred HHHHHHHHHHHHhcc
Q 022250 167 IGSILLQQAAISASF 181 (300)
Q Consensus 167 iGv~ll~~~a~~~~~ 181 (300)
--.|-|.-+++.+-+
T Consensus 152 CtTn~lap~lk~L~~ 166 (325)
T TIGR01532 152 CTTNCIVPLIKLLDD 166 (325)
T ss_pred cHHHHHHHHHHHHHH
Confidence 777766666666643
No 102
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.55 E-value=0.00052 Score=65.28 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=83.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEE-EEEEecC------CCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSH------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eL-vg~vd~~------~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (300)
|+||+|+|+ |..|.+++..+.+.- .++ ....|.. ..-++...+-|..-+.++..++|++++++ ++
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~------~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD------GA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh------cC
Confidence 479999998 999999999887653 332 2333311 00011112223333456777899999994 69
Q ss_pred cEEEEcCCchhHHHHHHH---HHHcCCCEEEeCCCCCHHHHHHHHHHhhh----CCCeEEEcCCCcHHHH
Q 022250 108 AVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDK----ASMGCLIAPTLSIGSI 170 (300)
Q Consensus 108 DVVIDfT~p~~~~~~~~~---al~~G~~vVigTTG~~~e~~~~L~~~a~~----~~i~iv~a~N~SiGv~ 170 (300)
|+|+-..+.....+.+.. .+..+.++|+.|-|+.++-.+.+.+..++ ..+.++-.|||+-=|.
T Consensus 73 d~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa 142 (329)
T COG0240 73 DIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVA 142 (329)
T ss_pred CEEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHh
Confidence 999866655555555554 45788999999889876544444444332 2377888899987765
No 103
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.53 E-value=0.0013 Score=62.63 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=82.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHh-cCCcEEEEEEec-CCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~-~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
|+||+|+|+||-.|+.+++.+.+ ++.++.+.++.+ +..|+...++.++ .+.+-++..+... ..++|+++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~----~~~v~~~~~~~~~----~~~~Divf- 71 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGK----SIGVPEDAADEFV----FSDVDIVF- 71 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCc----cccCccccccccc----cccCCEEE-
Confidence 58999999999999999999988 788886666654 4567775556543 1333332222222 14689887
Q ss_pred cCCc-hhHHHHHHHHHHcCCCEEEeCCCCCHH----------HHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250 113 FTDA-STVYDNVKQATAFGMRSVVYVPHIQLE----------TVSALSAFCDKASMGCLIAPTLSIGS 169 (300)
Q Consensus 113 fT~p-~~~~~~~~~al~~G~~vVigTTG~~~e----------~~~~L~~~a~~~~i~iv~a~N~SiGv 169 (300)
|+.+ +...++...+.++|+.|+.-+..|-.+ ..+.|.+.-+ +| .++--||=|.-.
T Consensus 72 ~~ag~~~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg-~IianpNCst~~ 137 (334)
T COG0136 72 FAAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RG-FIIANPNCSTIQ 137 (334)
T ss_pred EeCchHHHHHHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhhh-CC-CEEECCChHHHH
Confidence 6654 666899999999998887666544211 1123555444 33 588999988763
No 104
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=97.53 E-value=0.00063 Score=65.25 Aligned_cols=86 Identities=13% Similarity=0.138 Sum_probs=60.3
Q ss_pred eEEEEcCCchHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHH-HHHhcccccCCccEEEEc
Q 022250 37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDF 113 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVIDf 113 (300)
||+|+|++|..|+.+++.+.+ +|..+|+.+......|+... +.| .... ..+++ +.+ .++|+|+.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~----~~~~-~~~~~~~~~------~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKG----KELE-VNEAKIESF------EGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCC----eeEE-EEeCChHHh------cCCCEEEEC
Confidence 699999999999999999987 67788876655444444432 111 1122 22222 233 378999988
Q ss_pred CCchhHHHHHHHHHHcCCCEE
Q 022250 114 TDASTVYDNVKQATAFGMRSV 134 (300)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vV 134 (300)
+......+.+..+++.|+.||
T Consensus 69 ~g~~~s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 69 AGGSVSKEFAPKAAKCGAIVI 89 (339)
T ss_pred CCHHHHHHHHHHHHHCCCEEE
Confidence 888888999999999998655
No 105
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.48 E-value=0.00065 Score=65.35 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=75.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCcCCCCccee-cCHHHHHhcccccCCccEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVV 110 (300)
.+||+|+|+||-.|+.+++.+.++|+++ |..+......|+... +.+ ..+.+. .|.++ + .++|+|
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-~~~----~~l~v~~~~~~~-~------~~~Div 72 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-FKG----REIIIQEAKINS-F------EGVDIA 72 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-eCC----cceEEEeCCHHH-h------cCCCEE
Confidence 3799999999999999999998889998 555544444555542 221 133333 23333 3 368999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCEEEeCC-------------CCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHH
Q 022250 111 IDFTDASTVYDNVKQATAFGMRSVVYVP-------------HIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTT-------------G~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l 171 (300)
+=.+..+...+.+..+.++|+.||-=+. .++.+ .|.+ ++ .++-.||=+.-..+
T Consensus 73 f~a~~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e---~i~~---~~--~iIanPnC~tt~~~ 138 (347)
T PRK06728 73 FFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAH---TLKE---HK--GIIAVPNCSALQMV 138 (347)
T ss_pred EECCChHHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHH---HHhc---cC--CEEECCCCHHHHHH
Confidence 8445666678888899999987774432 22333 3332 12 46888887765443
No 106
>PLN02712 arogenate dehydrogenase
Probab=97.47 E-value=0.0017 Score=67.62 Aligned_cols=125 Identities=17% Similarity=0.153 Sum_probs=78.4
Q ss_pred EeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccC
Q 022250 26 SCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK 105 (300)
Q Consensus 26 ~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~ 105 (300)
+|..+. +++||+|+|+ |+||+.+++.+.+ .+.+++ ++|++. . . +.+ ...|+..+.++++++. .
T Consensus 362 ~~~~~~--~~~kIgIIGl-G~mG~slA~~L~~-~G~~V~-~~dr~~--~-~-~~a---~~~Gv~~~~~~~el~~-----~ 424 (667)
T PLN02712 362 GCVNDG--SKLKIAIVGF-GNFGQFLAKTMVK-QGHTVL-AYSRSD--Y-S-DEA---QKLGVSYFSDADDLCE-----E 424 (667)
T ss_pred hccCCC--CCCEEEEEec-CHHHHHHHHHHHH-CcCEEE-EEECCh--H-H-HHH---HHcCCeEeCCHHHHHh-----c
Confidence 455554 3589999997 9999999999875 567877 566542 1 1 111 2345666788888774 3
Q ss_pred CccEEEEcCCchhHHHHHHHHHH--c-CCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE-EcCCCcHH
Q 022250 106 ARAVVIDFTDASTVYDNVKQATA--F-GMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG 168 (300)
Q Consensus 106 ~~DVVIDfT~p~~~~~~~~~al~--~-G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv-~a~N~SiG 168 (300)
.+|+||-+++|....+.+..... . .-.+|+-.+.-...-.+.+.+... .+..++ .-|++..-
T Consensus 425 ~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v~~HPm~G~e 490 (667)
T PLN02712 425 HPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDILCTHPMFGPE 490 (667)
T ss_pred CCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceEeeCCCCCcc
Confidence 58999988888887777765543 1 123555544332223344554433 245555 67777654
No 107
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.46 E-value=0.001 Score=62.59 Aligned_cols=104 Identities=20% Similarity=0.151 Sum_probs=63.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
.|||+|+|+ |.||+.+++.+.. .++++. +++++. ..+++++++ ++|+||-+.
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~-~G~~V~-~~~r~~-------------------~~~~~~~~~------~advvi~~v 55 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASA-NGHRVR-VWSRRS-------------------GLSLAAVLA------DADVIVSAV 55 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHH-CCCEEE-EEeCCC-------------------CCCHHHHHh------cCCEEEEEC
Confidence 378999997 9999999998874 467765 566542 135667763 789999666
Q ss_pred CchhHHHHHHHHHH----cCCCEEEeCCCCCHHHHHHHHHHhhh--CCCeEE--EcCCCc
Q 022250 115 DASTVYDNVKQATA----FGMRSVVYVPHIQLETVSALSAFCDK--ASMGCL--IAPTLS 166 (300)
Q Consensus 115 ~p~~~~~~~~~al~----~G~~vVigTTG~~~e~~~~L~~~a~~--~~i~iv--~a~N~S 166 (300)
+.+.+.+.+..... .++-+|..|+|++++....+.+..+. ...|++ ..|+++
T Consensus 56 p~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a 115 (308)
T PRK14619 56 SMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLS 115 (308)
T ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcH
Confidence 65555555544432 34556666667765432222222111 123443 677766
No 108
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.00067 Score=61.85 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=58.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC--------C----cchhhhhcC-cCCCC----cce-------e
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------G----EDIGMVCDM-EQPLE----IPV-------M 91 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--------g----~d~~~~~g~-~~~~g----v~v-------~ 91 (300)
|+|+++|- ||||..+++.+. +.+.++|+ +|.+.. | ....+++.. ..+.- +|. .
T Consensus 1 M~iGmiGL-GrMG~n~v~rl~-~~ghdvV~-yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi 77 (300)
T COG1023 1 MQIGMIGL-GRMGANLVRRLL-DGGHDVVG-YDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI 77 (300)
T ss_pred Ccceeecc-chhhHHHHHHHH-hCCCeEEE-EcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH
Confidence 57999997 999999999988 46889886 564311 0 011122210 00100 111 1
Q ss_pred cCHHHHHhcccccCCccEEEEc--CCchhHHHHHHHHHHcCCCEE-EeCCC
Q 022250 92 SDLTMVLGSISQSKARAVVIDF--TDASTVYDNVKQATAFGMRSV-VYVPH 139 (300)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDf--T~p~~~~~~~~~al~~G~~vV-igTTG 139 (300)
+++...| ..-|+|||- |+-.......+.+.++|++.+ +||.|
T Consensus 78 ~~la~~L------~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 78 DDLAPLL------SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred HHHHhhc------CCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 2333333 356999996 455666777788999999999 78864
No 109
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=97.42 E-value=0.0005 Score=67.72 Aligned_cols=140 Identities=17% Similarity=0.106 Sum_probs=80.7
Q ss_pred CCCcceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhh-------hcCcCCCCcc
Q 022250 32 PQSNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMV-------CDMEQPLEIP 89 (300)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~~~~-------~g~~~~~gv~ 89 (300)
+.|++||+|+|+ ||+||.+.+.+.+. +++|+|++=|... .|+--+++ +-. ....+.
T Consensus 72 ~~~~ikVgINGF-GRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v-~Gk~I~ 149 (442)
T PLN02237 72 TVAKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISV-DGKPIK 149 (442)
T ss_pred ccceEEEEEECC-ChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEE-CCEEEE
Confidence 347799999998 99999999987655 6899999866210 11100000 000 001122
Q ss_pred eec--CHHHHHhcccc-cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHH-HHH----HH--HHHhhhCCCeE
Q 022250 90 VMS--DLTMVLGSISQ-SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE-TVS----AL--SAFCDKASMGC 159 (300)
Q Consensus 90 v~~--dl~~~l~~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e-~~~----~L--~~~a~~~~i~i 159 (300)
+++ |++++- | +.++|+|+++|-.....+.+...++.|...|+=+ .+..+ +.. .+ +.+..+ .-.+
T Consensus 150 V~~~~dp~~l~----W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS-AP~~d~dvptvV~GVN~~~~~~~-~~~I 223 (442)
T PLN02237 150 VVSNRDPLKLP----WAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGADIPTYVVGVNEDDYDHE-VANI 223 (442)
T ss_pred EEEcCCchhCC----hhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC-CCCCCCCCceEecccCHHHhCcC-CCCE
Confidence 221 222221 1 1478999999988888999999999998777655 22111 000 00 111111 0233
Q ss_pred EEcCCCcHHHHHHHHHHHHhcc
Q 022250 160 LIAPTLSIGSILLQQAAISASF 181 (300)
Q Consensus 160 v~a~N~SiGv~ll~~~a~~~~~ 181 (300)
+ +|=|--.|-|.-+++.+-+
T Consensus 224 I--SnaSCTTNcLAPvlkvL~d 243 (442)
T PLN02237 224 V--SNASCTTNCLAPFVKVLDE 243 (442)
T ss_pred E--ECCchHHHHHHHHHHHHHH
Confidence 4 6667777777666666643
No 110
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.40 E-value=0.0017 Score=60.47 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=74.9
Q ss_pred EEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCchh-
Q 022250 40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST- 118 (300)
Q Consensus 40 V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~- 118 (300)
++|. |.||..+++.+.+ .++++. ++|++. .....+. +.|+...++++++++ ++|+||-+.++..
T Consensus 1 ~IGl-G~mG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~~~~~------~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLK-AGHPVR-VFDLFP--DAVEEAV----AAGAQAAASPAEAAE------GADRVITMLPAGQH 65 (288)
T ss_pred CCcc-cHhHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCCChHH
Confidence 4787 9999999999875 567765 467643 2222232 346667788888874 7899997776534
Q ss_pred HHHHH---HHHH---HcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250 119 VYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (300)
Q Consensus 119 ~~~~~---~~al---~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv 169 (300)
+.+.+ .... ..| .+|+-+++.+++..+++.+.+++.|+..+-+| .|=|.
T Consensus 66 ~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vdaP-v~Gg~ 120 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDAP-VSGGV 120 (288)
T ss_pred HHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEECC-CCCCH
Confidence 34443 2222 333 36666667778888889998888888877765 44343
No 111
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=97.34 E-value=0.00049 Score=65.87 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=62.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhh------hcCcCCCCcceec-
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMV------CDMEQPLEIPVMS- 92 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~~~~------~g~~~~~gv~v~~- 92 (300)
|+||+|+|. ||+||.+.+.+.+. +++|+|++-|... .|+--+++ +-. ....+.++.
T Consensus 1 ~~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v-~g~~I~v~~~ 78 (337)
T PRK07403 1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITV-NGKTIKCVSD 78 (337)
T ss_pred CeEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEE-CCEEEEEEEc
Confidence 689999998 99999999997766 5899999876310 01100000 000 001233332
Q ss_pred -CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250 93 -DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (300)
Q Consensus 93 -dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (300)
|++++-= .+.++|+|+++|......+.+...++.|...|+-+
T Consensus 79 ~dp~~~~W---~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iS 121 (337)
T PRK07403 79 RNPLNLPW---KEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT 121 (337)
T ss_pred CCcccCCh---hhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence 2333210 01379999999988888999999999997777544
No 112
>PLN02256 arogenate dehydrogenase
Probab=97.34 E-value=0.0031 Score=59.58 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=56.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
++||+|+|+ |.||+.+++.+.+ .+.++.+ +|++.. .+.+ ...|+..+++.++++. .++|+||-++
T Consensus 36 ~~kI~IIG~-G~mG~slA~~L~~-~G~~V~~-~d~~~~----~~~a---~~~gv~~~~~~~e~~~-----~~aDvVilav 100 (304)
T PLN02256 36 KLKIGIVGF-GNFGQFLAKTFVK-QGHTVLA-TSRSDY----SDIA---AELGVSFFRDPDDFCE-----EHPDVVLLCT 100 (304)
T ss_pred CCEEEEEee-CHHHHHHHHHHHh-CCCEEEE-EECccH----HHHH---HHcCCeeeCCHHHHhh-----CCCCEEEEec
Confidence 589999997 9999999999875 4678774 665421 1111 2346666788888763 3689999999
Q ss_pred CchhHHHHHHHH
Q 022250 115 DASTVYDNVKQA 126 (300)
Q Consensus 115 ~p~~~~~~~~~a 126 (300)
+|....+.+...
T Consensus 101 p~~~~~~vl~~l 112 (304)
T PLN02256 101 SILSTEAVLRSL 112 (304)
T ss_pred CHHHHHHHHHhh
Confidence 998888877665
No 113
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=97.34 E-value=0.00055 Score=66.75 Aligned_cols=134 Identities=17% Similarity=0.133 Sum_probs=83.1
Q ss_pred CCCcceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCc---c----hhhhhcCcCCCCcc
Q 022250 32 PQSNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGE---D----IGMVCDMEQPLEIP 89 (300)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~---d----~~~~~g~~~~~gv~ 89 (300)
+.|++||+|+|+ ||+||.+.+.+.+. +..+|+++=|... .|+ + .+..+-. ....++
T Consensus 57 ~~~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v-~gk~I~ 134 (395)
T PLN03096 57 TEAKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISV-DGKVIK 134 (395)
T ss_pred cccccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEE-CCEEEE
Confidence 346799999999 99999999998766 6899998754210 000 0 0000000 001233
Q ss_pred eec--CHHHHHhcccc-cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-----------CCCHHHHHHHHHHhhhC
Q 022250 90 VMS--DLTMVLGSISQ-SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-----------HIQLETVSALSAFCDKA 155 (300)
Q Consensus 90 v~~--dl~~~l~~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-----------G~~~e~~~~L~~~a~~~ 155 (300)
++. |++++- + +.++|+|+++|-.....+.+...+++|...|+=+- |.++++ +. .+
T Consensus 135 v~~~~dp~~~~----w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~---l~---~~- 203 (395)
T PLN03096 135 VVSDRNPLNLP----WGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADD---YK---HS- 203 (395)
T ss_pred EEEcCCccccc----ccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHH---hc---cC-
Confidence 332 344431 1 14799999999988889999999999977775542 223332 21 12
Q ss_pred CCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022250 156 SMGCLIAPTLSIGSILLQQAAISASF 181 (300)
Q Consensus 156 ~i~iv~a~N~SiGv~ll~~~a~~~~~ 181 (300)
-.++ +|=|--.|-|.-+++.+-+
T Consensus 204 -~~II--SnaSCTTn~LAp~lkvL~~ 226 (395)
T PLN03096 204 -DPII--SNASCTTNCLAPFVKVLDQ 226 (395)
T ss_pred -CCEE--ECCchHHHHHHHHHHHHHH
Confidence 2333 7888888877777776653
No 114
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=97.31 E-value=0.00055 Score=65.59 Aligned_cols=137 Identities=17% Similarity=0.130 Sum_probs=79.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCc---c---hhhhhcCcCCCCccee-
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGE---D---IGMVCDMEQPLEIPVM- 91 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~-------------~~g~---d---~~~~~g~~~~~gv~v~- 91 (300)
|+||+|+|+ |++||.+.+.+.+. ++++|+++=|.. ..|+ + .+..+-. ....+.++
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v-~g~~i~v~~ 78 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFV-GDDAIRLLH 78 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEE-CCEEEEEEE
Confidence 579999999 99999999998763 579999876411 0010 0 0000000 01123333
Q ss_pred -cCHHHHHhcccc-cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHH-HH---HHH--HHHhhhCCCeEEEcC
Q 022250 92 -SDLTMVLGSISQ-SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE-TV---SAL--SAFCDKASMGCLIAP 163 (300)
Q Consensus 92 -~dl~~~l~~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e-~~---~~L--~~~a~~~~i~iv~a~ 163 (300)
.+++++- + +.++|+|+++|......+.+..++++|..+|+=+.-+..+ .. ..+ +++..+ -.++ +
T Consensus 79 ~~~p~~~~----w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~--~~II--S 150 (336)
T PRK13535 79 ERDIASLP----WRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAE--HRIV--S 150 (336)
T ss_pred cCCcccCc----ccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcC--CCEE--E
Confidence 2444431 1 1489999999999999999999999997777654322111 00 000 111122 2344 6
Q ss_pred CCcHHHHHHHHHHHHhcc
Q 022250 164 TLSIGSILLQQAAISASF 181 (300)
Q Consensus 164 N~SiGv~ll~~~a~~~~~ 181 (300)
|=|--.|-|.-+++.+-+
T Consensus 151 nasCTTn~Lap~lk~L~~ 168 (336)
T PRK13535 151 NASCTTNCIIPVIKLLDD 168 (336)
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 667777766666666543
No 115
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.28 E-value=0.0018 Score=65.09 Aligned_cols=119 Identities=16% Similarity=0.096 Sum_probs=69.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCc-chhhh-----------hcCc-CCCC-cceecCHHHHHhc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE-DIGMV-----------CDME-QPLE-IPVMSDLTMVLGS 100 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~-d~~~~-----------~g~~-~~~g-v~v~~dl~~~l~~ 100 (300)
.+||+|+|+ |.||..++..+.. .++++. ++|++.... ...+. .+.. ...+ +.+.+|++++++
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~-~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~- 79 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLL-AGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA- 79 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc-
Confidence 358999998 9999999998875 578765 577542100 11000 0000 0112 556788888874
Q ss_pred ccccCCccEEEEcCCchhH-HHH----HHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250 101 ISQSKARAVVIDFTDASTV-YDN----VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (300)
Q Consensus 101 ~~~~~~~DVVIDfT~p~~~-~~~----~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~ 165 (300)
++|+||...+++.. ... +...+..+.-+.+.|.|++..+ |.+.+.+.+..++..||-
T Consensus 80 -----~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~---l~~~~~~~~r~~~~hP~n 141 (495)
T PRK07531 80 -----GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSD---LQEGMTHPERLFVAHPYN 141 (495)
T ss_pred -----CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcceEEEEecCC
Confidence 79999987765542 222 2233333443444455887654 455555555566666654
No 116
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.28 E-value=0.00099 Score=60.42 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=76.9
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCcCCCC-cc-----eecCHHHHHhccc
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IP-----VMSDLTMVLGSIS 102 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~g-v~-----v~~dl~~~l~~~~ 102 (300)
+.+||+|.|+ |++|+.+++.+.+ .+.+++++.|. ++.|-|..++.....+.+ +. .+-+.++++.
T Consensus 30 ~~~~v~I~G~-G~VG~~~a~~L~~-~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~--- 104 (227)
T cd01076 30 AGARVAIQGF-GNVGSHAARFLHE-AGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE--- 104 (227)
T ss_pred cCCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---
Confidence 4589999997 9999999998875 69999999995 334556555432111111 11 1113455664
Q ss_pred ccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250 103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI 167 (300)
Q Consensus 103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~Si 167 (300)
.++||+|.++.+... .+++. +-...+|+|-- .++++..+.| +++ .++|.|-|..
T Consensus 105 --~~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L----~~r--Gi~~~PD~~a 161 (227)
T cd01076 105 --LDCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEIL----HER--GVLVVPDILA 161 (227)
T ss_pred --ecccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHH----HHC--CCEEEChHHh
Confidence 589999999977665 33444 44699999976 4665443333 443 5688888765
No 117
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.26 E-value=0.0049 Score=59.00 Aligned_cols=126 Identities=11% Similarity=0.088 Sum_probs=71.3
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhh-cCcCCCCcceecCHHHHHhcccccCCc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKAR 107 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~------~g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (300)
|+||+|+|+ |.||..++..+.+.. .......++.. .+.....+- +..-+..+.+++|+++++ .++
T Consensus 7 ~mkI~IiGa-Ga~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~------~~a 78 (341)
T PRK12439 7 EPKVVVLGG-GSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAA------NCA 78 (341)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHH------hcC
Confidence 689999998 999999999887653 22222222110 011100010 110012345677888877 378
Q ss_pred cEEEEcCCchhHHHHHHHHH---HcCCCEEEeCCCCCHHH----HHHHHHHhhhCCCeEEEcCCCcHH
Q 022250 108 AVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSIG 168 (300)
Q Consensus 108 DVVIDfT~p~~~~~~~~~al---~~G~~vVigTTG~~~e~----~~~L~~~a~~~~i~iv~a~N~SiG 168 (300)
|+||-++++..+.+.++... ..+.++|+-+-|+..+. .+.|.+......+.++..||+.-=
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~e 146 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIARE 146 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHH
Confidence 99997887777666665544 33445666555876421 123333322223557888998874
No 118
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.26 E-value=0.0019 Score=57.57 Aligned_cols=111 Identities=19% Similarity=0.275 Sum_probs=71.2
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce----ecC---HHHHHhcccccCCccEE
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARAVV 110 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~DVV 110 (300)
|+|+|+||++|+.+++.+.+ +++++.+.+.... ...+..+- ..|+.+ ++| +.+++ .++|+|
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~-~~~~~~l~----~~g~~vv~~d~~~~~~l~~al------~g~d~v 68 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPS-SDRAQQLQ----ALGAEVVEADYDDPESLVAAL------KGVDAV 68 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSH-HHHHHHHH----HTTTEEEES-TT-HHHHHHHH------TTCSEE
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccc-hhhhhhhh----cccceEeecccCCHHHHHHHH------cCCceE
Confidence 78999999999999999987 8899988876431 01112221 223322 233 44455 589999
Q ss_pred EEcCC------chhHHHHHHHHHHcCCCEEEeCC-C--C------C-H----HHHHHHHHHhhhCCCeEE
Q 022250 111 IDFTD------ASTVYDNVKQATAFGMRSVVYVP-H--I------Q-L----ETVSALSAFCDKASMGCL 160 (300)
Q Consensus 111 IDfT~------p~~~~~~~~~al~~G~~vVigTT-G--~------~-~----e~~~~L~~~a~~~~i~iv 160 (300)
+-.+. .+.....+..|.++|+..++=++ + . . . +....++++.++.+++..
T Consensus 69 ~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t 138 (233)
T PF05368_consen 69 FSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYT 138 (233)
T ss_dssp EEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBE
T ss_pred EeecCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccce
Confidence 97776 23456788899999998887442 1 1 1 1 223467888888777655
No 119
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.23 E-value=0.0061 Score=57.24 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=60.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCccEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVI 111 (300)
..||+|+|+ |.||..++..+.+..- .++ -++|++. ...... ...|+ .+..++++++ .++|+||
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V-~~~dr~~--~~~~~a----~~~g~~~~~~~~~~~~~------~~aDvVi 71 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEI-VGADRSA--ETRARA----RELGLGDRVTTSAAEAV------KGADLVI 71 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEE-EEEECCH--HHHHHH----HhCCCCceecCCHHHHh------cCCCEEE
Confidence 468999997 9999999998875432 244 4667642 111111 12232 2346777776 3789999
Q ss_pred EcCCchhHHHHHHHHH---HcCCCEEEeCCCCCHHHHHHHHHH
Q 022250 112 DFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAF 151 (300)
Q Consensus 112 DfT~p~~~~~~~~~al---~~G~~vVigTTG~~~e~~~~L~~~ 151 (300)
.++++....+.+.... ..+. +|+-..+.+.+..+.+.+.
T Consensus 72 iavp~~~~~~v~~~l~~~l~~~~-iv~dvgs~k~~~~~~~~~~ 113 (307)
T PRK07502 72 LCVPVGASGAVAAEIAPHLKPGA-IVTDVGSVKASVIAAMAPH 113 (307)
T ss_pred ECCCHHHHHHHHHHHHhhCCCCC-EEEeCccchHHHHHHHHHh
Confidence 8888877655554433 3333 4444444444444444443
No 120
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.23 E-value=0.00089 Score=55.93 Aligned_cols=110 Identities=18% Similarity=0.096 Sum_probs=65.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc----ceecCHHHHHhcccccCCccEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI----PVMSDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv----~v~~dl~~~l~~~~~~~~~DVV 110 (300)
..||+|+|+ |.||+.+++.+.+.. .+-+.++|++. .....++ ...+. ..+.+.++++ .++|+|
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~Dvv 85 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTL--EKAKALA---ERFGELGIAIAYLDLEELL------AEADLI 85 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCH--HHHHHHH---HHHhhcccceeecchhhcc------ccCCEE
Confidence 478999998 999999999987653 44455667542 1222222 11121 1245666665 479999
Q ss_pred EEcCCchhH----HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250 111 IDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (300)
Q Consensus 111 IDfT~p~~~----~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv 160 (300)
|..+++..+ .......++.+.-++--.+. .... .+.+.+++.|+.++
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~-~~~~--~l~~~~~~~g~~~v 136 (155)
T cd01065 86 INTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN-PLET--PLLKEARALGAKTI 136 (155)
T ss_pred EeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC-CCCC--HHHHHHHHCCCcee
Confidence 988877664 11223445666655533221 1111 57777788777655
No 121
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.19 E-value=0.0013 Score=61.08 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=78.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE--EEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV--VID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV--VID 112 (300)
.+|.|+|. |.|+....++... |++||+|++.... +...+++ ..+|||.|...|++-+ ++|+ |+.
T Consensus 5 ksVvV~Gt--rFGq~Ylaaf~~~~~~~eLaGiLaqGS--eRSRaLA---h~~GVply~~~eelpd------~idiACVvV 71 (361)
T COG4693 5 KSVVVCGT--RFGQFYLAAFAAAPPRFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD------DIDIACVVV 71 (361)
T ss_pred ceEEEecc--hHHHHHHHHhccCCCCceeehhhhccc--HHHHHHH---HHhCCccccCHhhCCC------CCCeEEEEE
Confidence 48999996 9999999988876 8999999987532 2234455 5789999999999864 5663 332
Q ss_pred cCC--chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCe
Q 022250 113 FTD--ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 158 (300)
Q Consensus 113 fT~--p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~ 158 (300)
-|. -..--+.++..++.|++|+.+-+-. ++++.++.++|++.|..
T Consensus 72 rsai~Gg~Gs~larall~RGi~VlqEHPl~-p~di~~l~rlA~rqG~~ 118 (361)
T COG4693 72 RSAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRR 118 (361)
T ss_pred eeeeecCCcHHHHHHHHHcccHHHHhCCCC-HHHHHHHHHHHHHhCcE
Confidence 232 2334677888899999999887754 34566677777766544
No 122
>PLN02712 arogenate dehydrogenase
Probab=97.17 E-value=0.0058 Score=63.73 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=56.6
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
.++||+|+|+ |+||+.+++.+.+. ++++++ +|++.. . ..+ ...|+..+.|+++++. ..+|+||.+
T Consensus 51 ~~~kIgIIG~-G~mG~slA~~L~~~-G~~V~~-~dr~~~-~---~~A---~~~Gv~~~~d~~e~~~-----~~aDvViLa 115 (667)
T PLN02712 51 TQLKIAIIGF-GNYGQFLAKTLISQ-GHTVLA-HSRSDH-S---LAA---RSLGVSFFLDPHDLCE-----RHPDVILLC 115 (667)
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHHC-CCEEEE-EeCCHH-H---HHH---HHcCCEEeCCHHHHhh-----cCCCEEEEc
Confidence 3689999997 99999999998754 688766 555321 1 111 2456667788888663 368999999
Q ss_pred CCchhHHHHHHHH
Q 022250 114 TDASTVYDNVKQA 126 (300)
Q Consensus 114 T~p~~~~~~~~~a 126 (300)
++++...+.+...
T Consensus 116 vP~~~~~~vl~~l 128 (667)
T PLN02712 116 TSIISTENVLKSL 128 (667)
T ss_pred CCHHHHHHHHHhh
Confidence 9988877777654
No 123
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=97.17 E-value=0.0023 Score=60.65 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=59.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
.||+|+|++|-+|..+++.+..+|++||+.+..... + . ..+.++++ .++|+|+=+++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-------~----~------~~~~~~~~------~~~D~vFlalp 58 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-------K----D------AAERAKLL------NAADVAILCLP 58 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-------c----C------cCCHhHhh------cCCCEEEECCC
Confidence 489999999999999999999999999999865431 0 0 01334554 36899985666
Q ss_pred chhHHHHHHHHHHcCCCEEEe
Q 022250 116 ASTVYDNVKQATAFGMRSVVY 136 (300)
Q Consensus 116 p~~~~~~~~~al~~G~~vVig 136 (300)
.+...+.+..+.+.|+.||-=
T Consensus 59 ~~~s~~~~~~~~~~g~~VIDl 79 (310)
T TIGR01851 59 DDAAREAVSLVDNPNTCIIDA 79 (310)
T ss_pred HHHHHHHHHHHHhCCCEEEEC
Confidence 677788888888899976643
No 124
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.13 E-value=0.0068 Score=60.68 Aligned_cols=115 Identities=13% Similarity=0.151 Sum_probs=70.3
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
|.+|+|+|. |.||+.+++.+.+ .++++. ++|++. ....++.......| +..+++++++++++ .++|+||-
T Consensus 1 ~~~IgvIGL-G~MG~~lA~nL~~-~G~~V~-v~dr~~--~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l---~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGL-AVMGQNLALNIAS-RGFKIS-VYNRTY--EKTEEFVKKAKEGNTRVKGYHTLEELVNSL---KKPRKVIL 72 (470)
T ss_pred CCEEEEEeE-hHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHHHhhhhcCCcceecCCHHHHHhcC---CCCCEEEE
Confidence 468999997 9999999999885 577755 577653 12222221001113 34578999988521 25897776
Q ss_pred c-CCchhHHHHHH---HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCe
Q 022250 113 F-TDASTVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 158 (300)
Q Consensus 113 f-T~p~~~~~~~~---~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~ 158 (300)
+ ++++.+.+.+. ..++.|.-+|-++|++..+..+.. +..+++|+.
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~-~~l~~~Gi~ 121 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRI-KRCEEKGIL 121 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCe
Confidence 6 44555555543 345667777777777655444444 444445555
No 125
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.08 E-value=0.0082 Score=59.52 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=64.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
|||+|+|++|.||+.+++.+.+ .+.++. +++++. ....+++ ...|+...++.++++ .++|+||-+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~-~G~~V~-v~~r~~--~~~~~~a---~~~gv~~~~~~~e~~------~~aDvVIlavp 67 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKE-KGFEVI-VTGRDP--KKGKEVA---KELGVEYANDNIDAA------KDADIVIISVP 67 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHH-CCCEEE-EEECCh--HHHHHHH---HHcCCeeccCHHHHh------ccCCEEEEecC
Confidence 5899998559999999998875 466765 455542 1111222 234565667887777 37899998888
Q ss_pred chhHHHHHHHHHHc-C-CCEEEeCCCCCHHHHHHHHHHh
Q 022250 116 ASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALSAFC 152 (300)
Q Consensus 116 p~~~~~~~~~al~~-G-~~vVigTTG~~~e~~~~L~~~a 152 (300)
++...+.+...... . -.+|+-++.....-.+.+.+..
T Consensus 68 ~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~ 106 (437)
T PRK08655 68 INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA 106 (437)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc
Confidence 88777766655442 1 1244444433333445555554
No 126
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.03 E-value=0.0021 Score=56.52 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=30.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
|||+|+|++|+.|+.+++... ..++|+++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~-~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEAL-KRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEecCchhHHHHHHHHH-hCCCeeEEEEeC
Confidence 799999999999999999977 579999999864
No 127
>PLN02522 ATP citrate (pro-S)-lyase
Probab=97.02 E-value=0.0034 Score=64.47 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=80.3
Q ss_pred cceEEEEcCCchHHHHHHHHHHhc------CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKA------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA 108 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~------~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D 108 (300)
..|-.++|. ...-++..+.. +.-.+.+.+-+.. +.--.-+.|- ...++|||++++|+.++ ..++|
T Consensus 10 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~-~~~~iPVf~tv~eA~~~---~~~~~ 80 (608)
T PLN02522 10 TTQALFYNY----KQLPVQRMLDFDFLCGRETPSVAGIINPGS-EGFQKLFFGQ-EEIAIPVHGSIEAACKA---HPTAD 80 (608)
T ss_pred CceeEEEcC----cHHHHHhhhccceeccCCCCeeEEEEcCCC-CcceeEecCC-EeeCccccchHHHHHHh---CCCCc
Confidence 356677775 33334433321 1224455554422 1211223343 35689999999999973 23689
Q ss_pred EEEEcCCchhHHHHH-HHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250 109 VVIDFTDASTVYDNV-KQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (300)
Q Consensus 109 VVIDfT~p~~~~~~~-~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv 169 (300)
+.|.|.+|..+.+-+ +.|.+.|++.++-.| |+.+....+|.++++++++. ++.|| ++|+
T Consensus 81 ~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r-lIGPN-c~Gi 141 (608)
T PLN02522 81 VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV-VIGPA-TVGG 141 (608)
T ss_pred EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE-EECCC-CCee
Confidence 999999887776554 555567988776554 99877778999999999986 78898 4554
No 128
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=97.01 E-value=0.0018 Score=63.57 Aligned_cols=132 Identities=18% Similarity=0.165 Sum_probs=77.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh------cC--------c------CCCCccee--c
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC------DM--------E------QPLEIPVM--S 92 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~------g~--------~------~~~gv~v~--~ 92 (300)
|+||+|+|. ||+||.+.+.+.+.++++++++-|+....+....++ |. . ....+.++ .
T Consensus 85 ~~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 85 KTKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred ceEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 479999998 999999999987668999999877321001110000 00 0 00112222 1
Q ss_pred CHHHHHhccccc-CCccEEEEcCCchhHHHHHHHHHHcCC-CEEEeCC---------CCCHHHHHHHHHHhhhCCCeEEE
Q 022250 93 DLTMVLGSISQS-KARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP---------HIQLETVSALSAFCDKASMGCLI 161 (300)
Q Consensus 93 dl~~~l~~~~~~-~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigTT---------G~~~e~~~~L~~~a~~~~i~iv~ 161 (300)
+++++- +. .++|+|+++|-.....+.+...++.|. .|||-.+ |.+.++ +. .+ -.++
T Consensus 164 dp~~~~----w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~---l~---~~--~~II- 230 (421)
T PLN02272 164 DPAEIP----WGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKT---YK---PN--MNIV- 230 (421)
T ss_pred CcccCc----ccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHH---hC---CC--CCee-
Confidence 333321 11 268999988888888888888888884 5555544 233332 21 12 2344
Q ss_pred cCCCcHHHHHHHHHHHHhcc
Q 022250 162 APTLSIGSILLQQAAISASF 181 (300)
Q Consensus 162 a~N~SiGv~ll~~~a~~~~~ 181 (300)
+|=|--.|-|.-+++.+-+
T Consensus 231 -SnaSCTTn~Lap~lk~L~~ 249 (421)
T PLN02272 231 -SNASCTTNCLAPLAKVVHE 249 (421)
T ss_pred -eCCCcHHHHHHHHHHHHHH
Confidence 5666666766666666643
No 129
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.00 E-value=0.0067 Score=56.30 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=58.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc-c-eecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-P-VMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~-v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
|||+|+|+ |.||..++..+.+ .++++. ++|++. ....... ..|. . ..++.+ .+ .++|+||.+
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~-~g~~V~-~~d~~~--~~~~~a~----~~g~~~~~~~~~~-~~------~~aDlVila 64 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRS-LGHTVY-GVSRRE--STCERAI----ERGLVDEASTDLS-LL------KDCDLVILA 64 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----HCCCcccccCCHh-Hh------cCCCEEEEc
Confidence 48999997 9999999999875 467755 466542 1111111 1121 1 223443 44 478999989
Q ss_pred CCchhHHHHHHHHHHc-C-CCEEEeCCCCCHHHHHHHH
Q 022250 114 TDASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALS 149 (300)
Q Consensus 114 T~p~~~~~~~~~al~~-G-~~vVigTTG~~~e~~~~L~ 149 (300)
+++....+.+...... . -.+|+-+++...+..+.+.
T Consensus 65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~ 102 (279)
T PRK07417 65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE 102 (279)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH
Confidence 8888887776655543 2 2344444455544444443
No 130
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=96.98 E-value=0.0029 Score=58.41 Aligned_cols=126 Identities=13% Similarity=0.257 Sum_probs=76.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee------cCHHHHHhcccccCCccE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM------SDLTMVLGSISQSKARAV 109 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~------~dl~~~l~~~~~~~~~DV 109 (300)
|||.|.|+||- |+.+++.+.+ .++++++.+.... |...-. ...+.++. .++.+.+. +.++|+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~-~g~~v~~s~~t~~-~~~~~~-----~~g~~~v~~g~l~~~~l~~~l~----~~~i~~ 68 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIA-QGIEILVTVTTSE-GKHLYP-----IHQALTVHTGALDPQELREFLK----RHSIDI 68 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHh-CCCeEEEEEccCC-cccccc-----ccCCceEEECCCCHHHHHHHHH----hcCCCE
Confidence 58999999987 9999998875 4688887665432 211110 00112222 34555554 367999
Q ss_pred EEEcCCchhH---HHHHHHHHHcCCCEE-EeCCCC------C-HHHHHHHHHHhhh---CCCeEEEcCCCcHHHHHHHHH
Q 022250 110 VIDFTDASTV---YDNVKQATAFGMRSV-VYVPHI------Q-LETVSALSAFCDK---ASMGCLIAPTLSIGSILLQQA 175 (300)
Q Consensus 110 VIDfT~p~~~---~~~~~~al~~G~~vV-igTTG~------~-~e~~~~L~~~a~~---~~i~iv~a~N~SiGv~ll~~~ 175 (300)
|||+|+|-+. ......|.+.|+|.+ ..=+.| . -+..++..+++.+ .+-.+++ .+|++-+..+
T Consensus 69 VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~~~~~~~i~l----ttG~k~l~~f 144 (256)
T TIGR00715 69 LVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQPYLRGKRVFL----TAGASWLSHF 144 (256)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhccccCCcEEE----ecCcchHHHH
Confidence 9999999764 556678899999998 332322 1 0122333334443 2235565 7888777666
Q ss_pred HH
Q 022250 176 AI 177 (300)
Q Consensus 176 a~ 177 (300)
..
T Consensus 145 ~~ 146 (256)
T TIGR00715 145 SL 146 (256)
T ss_pred hh
Confidence 53
No 131
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.96 E-value=0.0098 Score=55.79 Aligned_cols=114 Identities=19% Similarity=0.178 Sum_probs=76.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
+||+.+|. |.||.-+++.+.+ .++++. ++|++. ..+.+++ ...|.....+..++.+ .+|+||-+=+
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~-aG~~v~-v~~r~~--~ka~~~~---~~~Ga~~a~s~~eaa~------~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLK-AGHEVT-VYNRTP--EKAAELL---AAAGATVAASPAEAAA------EADVVITMLP 66 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHH-CCCEEE-EEeCCh--hhhhHHH---HHcCCcccCCHHHHHH------hCCEEEEecC
Confidence 58999996 9999999999884 578765 577653 1112222 2457777888877774 7899987654
Q ss_pred -chhHHHHHH---HHHH---cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250 116 -ASTVYDNVK---QATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 164 (300)
Q Consensus 116 -p~~~~~~~~---~al~---~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N 164 (300)
++.+.+.+. -.++ .|.-+|- .+..+++..+++.+..++.|...+=+|=
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~~G~~~lDAPV 121 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAAKGLEFLDAPV 121 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhcCCcEEecCc
Confidence 444444442 2333 3554544 4555677888999999999888776663
No 132
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.95 E-value=0.0079 Score=58.91 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=69.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cC--------c------CCCC-cceecCHHHHHh
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DM--------E------QPLE-IPVMSDLTMVLG 99 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~--------~------~~~g-v~v~~dl~~~l~ 99 (300)
|||+|+|+ |.||..++..+.+ .++++++ +|.+. ..+..+. |. . ...| +..+++++++++
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~-~G~~V~~-~d~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLAD-LGHEVTG-VDIDQ--EKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHh-cCCeEEE-EECCH--HHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence 48999997 9999999998874 6788765 66532 1111111 00 0 0123 455678888774
Q ss_pred cccccCCccEEEEcCC-ch---------hHHHHHHH---HHHcCCCEEEeCC---CCCHHHHHHHHHH-hh---hCCCeE
Q 022250 100 SISQSKARAVVIDFTD-AS---------TVYDNVKQ---ATAFGMRSVVYVP---HIQLETVSALSAF-CD---KASMGC 159 (300)
Q Consensus 100 ~~~~~~~~DVVIDfT~-p~---------~~~~~~~~---al~~G~~vVigTT---G~~~e~~~~L~~~-a~---~~~i~i 159 (300)
++|+||.+.+ |. .+.+.+.. .+..|.-+|..+| |.+.+-...+.+. .. ....++
T Consensus 76 ------~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 76 ------DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred ------hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7899887654 32 13333332 3344555555554 3443332233222 10 123688
Q ss_pred EEcCCCcHHHHH
Q 022250 160 LIAPTLSIGSIL 171 (300)
Q Consensus 160 v~a~N~SiGv~l 171 (300)
..+|.|.--.++
T Consensus 150 ~~~Pe~~~~G~~ 161 (411)
T TIGR03026 150 AYNPEFLREGNA 161 (411)
T ss_pred EECCCcCCCCCh
Confidence 999988655443
No 133
>PRK08223 hypothetical protein; Validated
Probab=96.94 E-value=0.0074 Score=56.63 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=26.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
.-||+|+|| |.+|..+++.+.. .++.=+.++|.
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~-aGVG~i~lvD~ 59 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLAR-LGIGKFTIADF 59 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHH-hCCCeEEEEeC
Confidence 368999999 9999999998874 56655667774
No 134
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.94 E-value=0.0058 Score=58.08 Aligned_cols=113 Identities=12% Similarity=0.129 Sum_probs=68.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
.||+|+|+ |+||+++++.+.. .+++++...++.. .....+ .+.|+.++ +.+++++ .+|+|+-..+
T Consensus 4 kkIgiIG~-G~mG~AiA~~L~~-sG~~Viv~~~~~~--~~~~~a----~~~Gv~~~-s~~ea~~------~ADiVvLaVp 68 (314)
T TIGR00465 4 KTVAIIGY-GSQGHAQALNLRD-SGLNVIVGLRKGG--ASWKKA----TEDGFKVG-TVEEAIP------QADLIMNLLP 68 (314)
T ss_pred CEEEEEeE-cHHHHHHHHHHHH-CCCeEEEEECcCh--hhHHHH----HHCCCEEC-CHHHHHh------cCCEEEEeCC
Confidence 67999998 9999999999875 4677655444322 122211 13455544 4677763 7899998888
Q ss_pred chhHHHHHH----HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE-EcCCCcHH
Q 022250 116 ASTVYDNVK----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG 168 (300)
Q Consensus 116 p~~~~~~~~----~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv-~a~N~SiG 168 (300)
|+.....+. ..++.+ .+|+=..|++-+.. +..-.+ +++++ +.||...-
T Consensus 69 p~~~~~~v~~ei~~~l~~g-~iVs~aaG~~i~~~---~~~~~~-~~~VvrvmPn~p~~ 121 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEG-KTLGFSHGFNIHFV---QIVPPK-DVDVVMVAPKGPGT 121 (314)
T ss_pred cHhHHHHHHHHHHhhCCCC-cEEEEeCCccHhhc---cccCCC-CCcEEEECCCCCcH
Confidence 883433322 223334 36665679986553 322221 24444 78887754
No 135
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.93 E-value=0.0017 Score=61.72 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=64.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
-+|+|+|+ |.+|+.++..+....+++-+.+++++. ..+.+++. +...++ +..++|+++++. ++|+||-
T Consensus 128 ~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~aDiVi~ 198 (325)
T PRK08618 128 KTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTF--EKAYAFAQEIQSKFNTEIYVVNSADEAIE------EADIIVT 198 (325)
T ss_pred cEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence 57999998 999999999887677899999998753 22222221 001223 345789999884 7999997
Q ss_pred cCCchhHHHHHHHHHHcCCCEE-EeCC
Q 022250 113 FTDASTVYDNVKQATAFGMRSV-VYVP 138 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vV-igTT 138 (300)
+|+ ..+.-.- .+++.|++|. ||+.
T Consensus 199 aT~-s~~p~i~-~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 199 VTN-AKTPVFS-EKLKKGVHINAVGSF 223 (325)
T ss_pred ccC-CCCcchH-HhcCCCcEEEecCCC
Confidence 664 3344444 7889999986 6653
No 136
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.92 E-value=0.037 Score=49.75 Aligned_cols=159 Identities=12% Similarity=0.152 Sum_probs=103.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
||||+|+.. |.-|...++.+.... .-+++++.+.+. .... ..+..++.|..+ .++|++|-+
T Consensus 1 ~mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~Pe---~~~~-----------fie~P~~~Lp~~---~e~Di~va~ 62 (224)
T COG1810 1 MMKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYPE---ELPD-----------FIEEPEDLLPKL---PEADIVVAY 62 (224)
T ss_pred CcEEEEEee-ccchHHHHHhHhhhccccceEEEEeccc---cccc-----------hhhCHHHhcCCC---CCCCEEEEe
Confidence 699999996 999999999988532 256777777531 1111 124556666531 478999988
Q ss_pred C-CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcH----HHHHHHHHHHHhccCCCCeEE
Q 022250 114 T-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI----GSILLQQAAISASFHYKNVEI 188 (300)
Q Consensus 114 T-~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~Si----Gv~ll~~~a~~~~~~~~dieI 188 (300)
+ +|+-..+..+.+.+.|+..||--..-..-..++|++.+.+.|+-+..--+|-- +--.+.+++..+.+....+|+
T Consensus 63 ~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~~p~i~~F~e~FG~P~vevev 142 (224)
T COG1810 63 GLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFEAPEPFCSLEPNENPHIDEFAERFGKPEVEVEV 142 (224)
T ss_pred ccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeeecCCccccCCCCCChHHHHHHHHcCCceEEEEe
Confidence 6 89999999999988887666532222223456788888876665444333320 122567788877654333333
Q ss_pred EEcc----CCCCCCCchHHHHHHHHHH
Q 022250 189 VESR----PNARDFPSPDATQIANNLS 211 (300)
Q Consensus 189 iE~H----h~K~DaPSGTA~~l~~~i~ 211 (300)
-+-- +-++.||=|.+.-+|+.+.
T Consensus 143 ~~~~i~~V~V~RsaPCGsT~~vAk~l~ 169 (224)
T COG1810 143 ENGKIKDVDVLRSAPCGSTWYVAKRLV 169 (224)
T ss_pred cCCeEEEEEEEecCCCchHHHHHHHhc
Confidence 2211 2378999999999999874
No 137
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.91 E-value=0.014 Score=58.73 Aligned_cols=117 Identities=10% Similarity=0.091 Sum_probs=68.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC---cceecCHHHHHhcccccCCccEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~~DVVI 111 (300)
+.+|+++|. |.||+.+++.+.+ .+++|+ ++|++. ..+..+.......| +..+++++++.+++ ..+|+||
T Consensus 6 ~~~IG~IGL-G~MG~~mA~nL~~-~G~~V~-V~NRt~--~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l---~~~dvIi 77 (493)
T PLN02350 6 LSRIGLAGL-AVMGQNLALNIAE-KGFPIS-VYNRTT--SKVDETVERAKKEGNLPLYGFKDPEDFVLSI---QKPRSVI 77 (493)
T ss_pred CCCEEEEee-HHHHHHHHHHHHh-CCCeEE-EECCCH--HHHHHHHHhhhhcCCcccccCCCHHHHHhcC---CCCCEEE
Confidence 578999997 9999999999985 588776 678653 22223321000112 22567888887521 2489888
Q ss_pred EcC-CchhHHHHH---HHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250 112 DFT-DASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (300)
Q Consensus 112 DfT-~p~~~~~~~---~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv 160 (300)
-+= .++++.+.+ ...++.|.=+|-++|. ++++..++.+.+++.|+..+
T Consensus 78 ~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~-~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 78 ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNE-WYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred EECCCcHHHHHHHHHHHhhcCCCCEEEECCCC-CHHHHHHHHHHHHHcCCeEE
Confidence 543 344444443 3344556444444443 34455666666666666533
No 138
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.87 E-value=0.0083 Score=51.12 Aligned_cols=82 Identities=23% Similarity=0.336 Sum_probs=52.1
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce----ecC---HHHHHhcccccCCccEE
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARAVV 110 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~DVV 110 (300)
|.|.|+||.+|+.+++.+.+. +.++.+++.++. ...+ ..++.+ +.| +.+++ .++|+|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~---~~~~------~~~~~~~~~d~~d~~~~~~al------~~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS---KAED------SPGVEIIQGDLFDPDSVKAAL------KGADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG---GHHH------CTTEEEEESCTTCHHHHHHHH------TTSSEE
T ss_pred eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch---hccc------ccccccceeeehhhhhhhhhh------hhcchh
Confidence 789999999999999999865 599999876432 1111 112211 123 44555 479999
Q ss_pred EEcCC-----chhHHHHHHHHHHcCCCEEE
Q 022250 111 IDFTD-----ASTVYDNVKQATAFGMRSVV 135 (300)
Q Consensus 111 IDfT~-----p~~~~~~~~~al~~G~~vVi 135 (300)
|++.. .+.....+..+.++|++-++
T Consensus 65 i~~~~~~~~~~~~~~~~~~a~~~~~~~~~v 94 (183)
T PF13460_consen 65 IHAAGPPPKDVDAAKNIIEAAKKAGVKRVV 94 (183)
T ss_dssp EECCHSTTTHHHHHHHHHHHHHHTTSSEEE
T ss_pred hhhhhhhcccccccccccccccccccccce
Confidence 98764 23345555666677775443
No 139
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.86 E-value=0.014 Score=54.64 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=64.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-------cCHHHHHhcccccCCcc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-------SDLTMVLGSISQSKARA 108 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-------~dl~~~l~~~~~~~~~D 108 (300)
|||.|.|+||.+|+.+++.+.+ .++++.++..... ....+. ..++.+. +++.+++ .++|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~-~g~~V~~l~R~~~---~~~~l~----~~~v~~v~~Dl~d~~~l~~al------~g~d 66 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALD-EGYQVRCLVRNLR---KASFLK----EWGAELVYGDLSLPETLPPSF------KGVT 66 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-CCCeEEEEEcChH---HhhhHh----hcCCEEEECCCCCHHHHHHHH------CCCC
Confidence 4899999999999999999885 5789887764321 111110 1223221 2345555 4789
Q ss_pred EEEEcCCch-------------hHHHHHHHHHHcCCC-EE-EeCCC-----CCH--HHHHHHHHHhhhCCCeEE
Q 022250 109 VVIDFTDAS-------------TVYDNVKQATAFGMR-SV-VYVPH-----IQL--ETVSALSAFCDKASMGCL 160 (300)
Q Consensus 109 VVIDfT~p~-------------~~~~~~~~al~~G~~-vV-igTTG-----~~~--e~~~~L~~~a~~~~i~iv 160 (300)
+||.+.... .....++.|.++|+. +| +++.+ .++ +...+.+++.++.++++.
T Consensus 67 ~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~t 140 (317)
T CHL00194 67 AIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPYT 140 (317)
T ss_pred EEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCeE
Confidence 999875321 124456777788864 44 23322 111 123345566666676654
No 140
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.83 E-value=0.007 Score=56.80 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=55.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh----hhcCcCCC--------CcceecCHHHHHhcc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM----VCDMEQPL--------EIPVMSDLTMVLGSI 101 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~----~~g~~~~~--------gv~v~~dl~~~l~~~ 101 (300)
+.||+|+|+ |.||..++..+.. .+++++. +|.+... ..+.. ..+...+. .+...+|+++++
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~-~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--- 77 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFAR-KGLQVVL-IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAV--- 77 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHh---
Confidence 468999998 9999999998874 5777765 6643200 00000 00100000 123456787776
Q ss_pred cccCCccEEEEcCCchh--HHHHHHH---HHHcCCCEEEeCCCCCHHH
Q 022250 102 SQSKARAVVIDFTDAST--VYDNVKQ---ATAFGMRSVVYVPHIQLET 144 (300)
Q Consensus 102 ~~~~~~DVVIDfT~p~~--~~~~~~~---al~~G~~vVigTTG~~~e~ 144 (300)
.++|+||.+.+++. ..+.+.. .+..+.-+++-|.|++.++
T Consensus 78 ---~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~ 122 (311)
T PRK06130 78 ---SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITA 122 (311)
T ss_pred ---ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence 37899998887653 2233322 2222332334455776443
No 141
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.81 E-value=0.015 Score=53.70 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=49.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
|||+|+|+ |.||+.++..+.+..- .++. ++|++. ...... ...|+. ...+.+++. ++|+||-+
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~-~~d~~~--~~~~~~----~~~g~~~~~~~~~~~~-------~aD~Vila 65 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVY-GYDHNE--LHLKKA----LELGLVDEIVSFEELK-------KCDVIFLA 65 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEE-EEcCCH--HHHHHH----HHCCCCcccCCHHHHh-------cCCEEEEe
Confidence 48999997 9999999999875421 3544 466542 111111 123332 234666653 48999999
Q ss_pred CCchhHHHHHHHHHH
Q 022250 114 TDASTVYDNVKQATA 128 (300)
Q Consensus 114 T~p~~~~~~~~~al~ 128 (300)
++|+...+.+.....
T Consensus 66 vp~~~~~~~~~~l~~ 80 (275)
T PRK08507 66 IPVDAIIEILPKLLD 80 (275)
T ss_pred CcHHHHHHHHHHHhc
Confidence 998888887766543
No 142
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.80 E-value=0.02 Score=55.64 Aligned_cols=70 Identities=20% Similarity=0.109 Sum_probs=48.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
..||+|+|.+|.||+.+++.+.+..+.++.| +|+... ...++++++ .++|+||-++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~~d~-----------------~~~~~~~~v------~~aDlVilav 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDPADP-----------------GSLDPATLL------QRADVLIFSA 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcCCcc-----------------ccCCHHHHh------cCCCEEEEeC
Confidence 4689999988999999999998655788775 665310 012344555 3677777777
Q ss_pred CchhHHHHHHHHHH
Q 022250 115 DASTVYDNVKQATA 128 (300)
Q Consensus 115 ~p~~~~~~~~~al~ 128 (300)
++....+.+.....
T Consensus 60 Pv~~~~~~l~~l~~ 73 (370)
T PRK08818 60 PIRHTAALIEEYVA 73 (370)
T ss_pred CHHHHHHHHHHHhh
Confidence 77777777766554
No 143
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.75 E-value=0.0089 Score=56.06 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=64.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
-+|+|+|+ |+||+.+++.+... ++++. +++++. ....... ..+... ++++++++ .++|+||..
T Consensus 152 k~v~IiG~-G~iG~avA~~L~~~-G~~V~-v~~R~~--~~~~~~~----~~g~~~~~~~~l~~~l------~~aDiVint 216 (287)
T TIGR02853 152 SNVMVLGF-GRTGMTIARTFSAL-GARVF-VGARSS--ADLARIT----EMGLIPFPLNKLEEKV------AEIDIVINT 216 (287)
T ss_pred CEEEEEcC-hHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HCCCeeecHHHHHHHh------ccCCEEEEC
Confidence 68999998 99999999998754 67765 566542 1111111 122221 34667777 478999976
Q ss_pred CCchhH-HHHHHHHHHcCCCEE-EeC-CCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250 114 TDASTV-YDNVKQATAFGMRSV-VYV-PHIQLETVSALSAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 114 T~p~~~-~~~~~~al~~G~~vV-igT-TG~~~e~~~~L~~~a~~~~i~iv~a~N~S 166 (300)
+ |... .+.....++.+.-++ +++ +|-++ + ++|++.|+..+++||.-
T Consensus 217 ~-P~~ii~~~~l~~~k~~aliIDlas~Pg~td-----f-~~Ak~~G~~a~~~~glP 265 (287)
T TIGR02853 217 I-PALVLTADVLSKLPKHAVIIDLASKPGGTD-----F-EYAKKRGIKALLAPGLP 265 (287)
T ss_pred C-ChHHhCHHHHhcCCCCeEEEEeCcCCCCCC-----H-HHHHHCCCEEEEeCCCC
Confidence 5 4333 222222333333222 222 35554 3 57889999999988654
No 144
>PLN02858 fructose-bisphosphate aldolase
Probab=96.74 E-value=0.019 Score=64.45 Aligned_cols=120 Identities=14% Similarity=0.052 Sum_probs=77.8
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
++.||+++|. |.||..+++.+.. .++++. ++|++. .....+. ..|....++..++.+ ++|+||-+
T Consensus 323 ~~~~IGfIGl-G~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~~~------~aDvVi~~ 387 (1378)
T PLN02858 323 PVKRIGFIGL-GAMGFGMASHLLK-SNFSVC-GYDVYK--PTLVRFE----NAGGLAGNSPAEVAK------DVDVLVIM 387 (1378)
T ss_pred CCCeEEEECc-hHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEe
Confidence 3578999997 9999999999874 578765 567543 2222332 234555678888874 78999865
Q ss_pred CC-chhHHHHHH------HHHHcCCCEEEeCCCCCHHHHHHHHHHhhh--CCCeEEEcCCCcHHHH
Q 022250 114 TD-ASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMGCLIAPTLSIGSI 170 (300)
Q Consensus 114 T~-p~~~~~~~~------~al~~G~~vVigTTG~~~e~~~~L~~~a~~--~~i~iv~a~N~SiGv~ 170 (300)
-+ |+.+.+.+. ..+..|. +||-++..+++..+++.+.+++ .++..+-+| .|=|..
T Consensus 388 V~~~~~v~~Vl~g~~g~~~~l~~g~-ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP-VsGg~~ 451 (1378)
T PLN02858 388 VANEVQAENVLFGDLGAVSALPAGA-SIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP-VSGGVK 451 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCCC-EEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc-CCCChh
Confidence 54 555555541 1223444 5555555556777788887777 777777766 444443
No 145
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.73 E-value=0.005 Score=54.04 Aligned_cols=123 Identities=13% Similarity=0.157 Sum_probs=63.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------CC------cchhhhhcCc-CCCCcceecCHHHHHhcc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VG------EDIGMVCDME-QPLEIPVMSDLTMVLGSI 101 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------~g------~d~~~~~g~~-~~~gv~v~~dl~~~l~~~ 101 (300)
|||+|+|. |.+|-.++..++ ..+++++| +|.+. .| ....+++... .......++|.++++.
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA-~~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~-- 75 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALA-EKGHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK-- 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHH-HTTSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred CEEEEECC-CcchHHHHHHHH-hCCCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence 79999997 999999998777 56899887 55321 01 0111111000 1123456678888764
Q ss_pred cccCCccEEEEcCC-c------------hhHHHHHHHHHHcCCCEEEeCC---CCCHHHHHHHHHHhhh--CCCeEEEcC
Q 022250 102 SQSKARAVVIDFTD-A------------STVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDK--ASMGCLIAP 163 (300)
Q Consensus 102 ~~~~~~DVVIDfT~-p------------~~~~~~~~~al~~G~~vVigTT---G~~~e~~~~L~~~a~~--~~i~iv~a~ 163 (300)
++|+++.+-+ | +.+.+.+...++.+.-+|+.+| |.+++....+.+.... .+..+.++|
T Consensus 76 ----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~P 151 (185)
T PF03721_consen 76 ----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSP 151 (185)
T ss_dssp ----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE--
T ss_pred ----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECC
Confidence 6888776532 2 2334445555666777888877 7777554444433222 235677777
Q ss_pred CCcH
Q 022250 164 TLSI 167 (300)
Q Consensus 164 N~Si 167 (300)
=|=.
T Consensus 152 Erl~ 155 (185)
T PF03721_consen 152 ERLR 155 (185)
T ss_dssp ----
T ss_pred CccC
Confidence 6543
No 146
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=96.69 E-value=0.035 Score=50.06 Aligned_cols=149 Identities=14% Similarity=0.119 Sum_probs=100.3
Q ss_pred CchHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC-CchhHHH
Q 022250 44 VKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYD 121 (300)
Q Consensus 44 ~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~ 121 (300)
.|+-|..+.+.+.+.++++ .+..++.+. +..++ .++.++.|.+ -.++|++|.++ +|+.+.+
T Consensus 5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~---~l~ef-----------Id~pee~Lp~---i~~~Dl~I~y~lHPDl~~~ 67 (217)
T PF02593_consen 5 DGKYGERVIENIKNYFDFCRSVIVYEIPE---DLPEF-----------IDDPEEYLPK---IPEADLLIAYGLHPDLTYE 67 (217)
T ss_pred eCcchHHHHHHHHhcCCCCceEEEEeCCc---ccccc-----------ccChHHHccC---CCCCCEEEEeccCchhHHH
Confidence 4888999999998888876 344555431 22222 2344555543 25789999977 8999999
Q ss_pred HHHHHHHcCCCEEEeCCCCCH--HHHHHHHHHhhhCCCeEEEcCCCc----HHHHHHHHHHHHhccCCCCeEE-EEccC-
Q 022250 122 NVKQATAFGMRSVVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLS----IGSILLQQAAISASFHYKNVEI-VESRP- 193 (300)
Q Consensus 122 ~~~~al~~G~~vVigTTG~~~--e~~~~L~~~a~~~~i~iv~a~N~S----iGv~ll~~~a~~~~~~~~dieI-iE~Hh- 193 (300)
..+.|.++|+..||.-. |+. ...++|++.+++.|+-+..--.|- -|--.+.++++.+.+. -+|| ++--.
T Consensus 68 l~~~~~e~g~kavIvp~-~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGkP--~~ei~v~~~~I 144 (217)
T PF02593_consen 68 LPEIAKEAGVKAVIVPS-ESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAEYFGKP--KVEIEVENGKI 144 (217)
T ss_pred HHHHHHHcCCCEEEEec-CCCccchHHHHHHHHHhcCceeecCccccccCCCCChhHHHHHHHhCCc--eEEEEecCCcE
Confidence 99999999998887533 322 345568888888887666544442 1233567888887653 4444 23221
Q ss_pred ---C-CCCCCchHHHHHHHHHHh
Q 022250 194 ---N-ARDFPSPDATQIANNLSN 212 (300)
Q Consensus 194 ---~-K~DaPSGTA~~l~~~i~~ 212 (300)
+ +++||=|++..+|+.+.-
T Consensus 145 ~~V~VlR~aPCGsT~~vAk~l~G 167 (217)
T PF02593_consen 145 KDVKVLRSAPCGSTWFVAKRLIG 167 (217)
T ss_pred EEEEEEecCCCccHHHHHHHhcC
Confidence 3 689999999999998743
No 147
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.69 E-value=0.02 Score=47.56 Aligned_cols=121 Identities=16% Similarity=0.178 Sum_probs=59.3
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-hcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~-~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
||.|+|+ |++|..+++.+.. .++.=+.++|.+.. -.+.... ..-....|-+-.+.+.+.+.+ ..+++-|..-
T Consensus 1 ~VliiG~-GglGs~ia~~L~~-~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~----~~p~v~i~~~ 74 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLAR-SGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNE----LNPGVNVTAV 74 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHH-CCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHH----HCCCcEEEEE
Confidence 6899998 9999999999874 56655556775321 0111110 000011121111222222221 2344433322
Q ss_pred CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250 115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~ 165 (300)
......+.. ...-.+..+|+.++.- .+....|.++|++.++|++.+.+.
T Consensus 75 ~~~~~~~~~-~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 75 PEGISEDNL-DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred eeecChhhH-HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111111111 1222456677766654 334566777777777777765553
No 148
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.66 E-value=0.012 Score=54.65 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=55.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcch---------hhhh--cCcC-------CCCcceecCHHH
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI---------GMVC--DMEQ-------PLEIPVMSDLTM 96 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~---------~~~~--g~~~-------~~gv~v~~dl~~ 96 (300)
+.||+|+|+ |.||..++..+... +++++. +|.+..-.+. ..+. |... ...+.+++|+++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~-g~~V~~-~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 79 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVA-GYDVVM-VDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD 79 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHC-CCceEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 358999998 99999999988754 777765 5643210000 0111 0000 013445667765
Q ss_pred HHhcccccCCccEEEEcCCchhH--HHHHHH---HHHcCCCEEEeCCCCCHHH
Q 022250 97 VLGSISQSKARAVVIDFTDASTV--YDNVKQ---ATAFGMRSVVYVPHIQLET 144 (300)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~~--~~~~~~---al~~G~~vVigTTG~~~e~ 144 (300)
+ .++|+||.+.+++.. .+.+.. ++..+..+++-|.+++..+
T Consensus 80 -~------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~ 125 (282)
T PRK05808 80 -L------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITE 125 (282)
T ss_pred -h------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 3 478999988765332 233333 3333444444455776654
No 149
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.57 E-value=0.015 Score=57.77 Aligned_cols=119 Identities=17% Similarity=0.226 Sum_probs=77.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCcCCC--Ccce--------ecCHHHHHh
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL--EIPV--------MSDLTMVLG 99 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~--gv~v--------~~dl~~~l~ 99 (300)
..||+|.|+ |++|+..++.+.+ .+.+||++.|+ ++.|-|..++....... .+.- +.+.++++.
T Consensus 232 g~rVaIqGf-GnVG~~~A~~L~~-~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~ 309 (445)
T PRK09414 232 GKRVVVSGS-GNVAIYAIEKAQQ-LGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWS 309 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccc
Confidence 489999998 9999999998874 68999999884 34466655433111000 0111 123455554
Q ss_pred cccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250 100 SISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 100 ~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~S 166 (300)
.++||+|-++..... .+++.....++..+|+|-- + .+++..+.| +++ .+++.|-+.
T Consensus 310 -----~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L----~~r--GI~~vPD~l 368 (445)
T PRK09414 310 -----VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF----LEA--GVLFAPGKA 368 (445)
T ss_pred -----cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH----HHC--CcEEECchh
Confidence 689999999876555 6777777778999999976 3 455433223 343 456667654
No 150
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.56 E-value=0.021 Score=53.35 Aligned_cols=99 Identities=12% Similarity=0.163 Sum_probs=55.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcch---------hhhhcCcC---------CCCcceecCHHHH
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI---------GMVCDMEQ---------PLEIPVMSDLTMV 97 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~---------~~~~g~~~---------~~gv~v~~dl~~~ 97 (300)
-||+|+|+ |.||..++..++. .+++++ ++|.+....+. ..+...+. ...+...+|+++
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 81 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCAR-AGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD- 81 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHh-CCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-
Confidence 48999998 9999999998774 588866 46643210000 00110000 011235677754
Q ss_pred HhcccccCCccEEEEcCCchhH-----HHHHHHHH-HcCCCEEEeCCCCCHHH
Q 022250 98 LGSISQSKARAVVIDFTDASTV-----YDNVKQAT-AFGMRSVVYVPHIQLET 144 (300)
Q Consensus 98 l~~~~~~~~~DVVIDfT~p~~~-----~~~~~~al-~~G~~vVigTTG~~~e~ 144 (300)
+ .++|+||+.-+-+.- +..+..++ ..+..++.-|+++...+
T Consensus 82 ~------~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~ 128 (286)
T PRK07819 82 F------ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK 128 (286)
T ss_pred h------CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 4 478999987643222 22333333 44555555566776654
No 151
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.55 E-value=0.013 Score=52.72 Aligned_cols=117 Identities=13% Similarity=0.168 Sum_probs=74.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCc-CCCCccee-----cCHHHHHhcccc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-QPLEIPVM-----SDLTMVLGSISQ 103 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~-~~~gv~v~-----~dl~~~l~~~~~ 103 (300)
.+||+|.|+ |++|+.+++.+.+ .+..+|++.|.+ + |-|..++.... ...++..+ .+-++++.
T Consensus 23 g~~vaIqGf-GnVG~~~a~~L~~-~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---- 95 (217)
T cd05211 23 GLTVAVQGL-GNVGWGLAKKLAE-EGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAILG---- 95 (217)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-cCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCccccee----
Confidence 589999998 9999999998875 589999999953 3 55543332100 01122221 13355654
Q ss_pred cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250 104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI 167 (300)
Q Consensus 104 ~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~Si 167 (300)
.++||+|.++..... +...+.+.+.++|+|.- .++++..+.| +++| +++.|-+-.
T Consensus 96 -~~~DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~L----~~~G--i~v~Pd~~~ 152 (217)
T cd05211 96 -LDVDIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALRIL----HERG--IVVAPDIVA 152 (217)
T ss_pred -ccccEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHHHH----HHCC--cEEEChHHh
Confidence 589999998866543 22445567899999876 3555432223 4444 677787655
No 152
>PLN02858 fructose-bisphosphate aldolase
Probab=96.55 E-value=0.03 Score=62.95 Aligned_cols=115 Identities=13% Similarity=0.015 Sum_probs=75.4
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
+..||+++|. |.||..+++.+.+ .++++. ++|++. .....+. ..|..+.+++.++.+ .+|+||-+
T Consensus 3 ~~~~IGfIGL-G~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~a~------~advVi~~ 67 (1378)
T PLN02858 3 SAGVVGFVGL-DSLSFELASSLLR-SGFKVQ-AFEIST--PLMEKFC----ELGGHRCDSPAEAAK------DAAALVVV 67 (1378)
T ss_pred CCCeEEEEch-hHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEE
Confidence 3478999997 9999999999885 578875 678653 2223333 346677889999874 78988865
Q ss_pred C-CchhHHHHH---HHHHHcC--CCEEEeCCCCCHHHHHHHHHHhhhCC--CeEEEcC
Q 022250 114 T-DASTVYDNV---KQATAFG--MRSVVYVPHIQLETVSALSAFCDKAS--MGCLIAP 163 (300)
Q Consensus 114 T-~p~~~~~~~---~~al~~G--~~vVigTTG~~~e~~~~L~~~a~~~~--i~iv~a~ 163 (300)
- .++.+.+.+ .-.++.- -.+|+-++..+++...++.+.+++.| +..+=+|
T Consensus 68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaP 125 (1378)
T PLN02858 68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAY 125 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 4 344445443 1233321 13666666666777788888877777 5544433
No 153
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=96.51 E-value=0.024 Score=53.32 Aligned_cols=129 Identities=19% Similarity=0.185 Sum_probs=85.8
Q ss_pred eEeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhccccc
Q 022250 25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS 104 (300)
Q Consensus 25 ~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~ 104 (300)
.+|+-.+++ +.||+-+|- |.||+.++..+.+ .++.++ ++|+.. ....+| .+.|..+.+++.|+.+
T Consensus 26 ~~s~~~~~s-~~~iGFIGL-G~MG~~M~~nLik-~G~kVt-V~dr~~--~k~~~f----~~~Ga~v~~sPaeVae----- 90 (327)
T KOG0409|consen 26 AMSSRITPS-KTRIGFIGL-GNMGSAMVSNLIK-AGYKVT-VYDRTK--DKCKEF----QEAGARVANSPAEVAE----- 90 (327)
T ss_pred cccccCCcc-cceeeEEee-ccchHHHHHHHHH-cCCEEE-EEeCcH--HHHHHH----HHhchhhhCCHHHHHh-----
Confidence 456655554 689999996 9999999999885 578766 577653 122233 2457888899999984
Q ss_pred CCccEEEEc-CCchhHHHHHH------HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250 105 KARAVVIDF-TDASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (300)
Q Consensus 105 ~~~DVVIDf-T~p~~~~~~~~------~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ 170 (300)
.+||+|-. +.|..+.+.+. ..+.-|.+.+|-.+..+++-..+|.+.++..+...+ =+--|=|+.
T Consensus 91 -~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~v-DAPVSGg~~ 161 (327)
T KOG0409|consen 91 -DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFV-DAPVSGGVK 161 (327)
T ss_pred -hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEE-eccccCCch
Confidence 78988764 45555555543 122355555455566777777888888887765544 344455543
No 154
>PRK06091 membrane protein FdrA; Validated
Probab=96.49 E-value=0.013 Score=59.39 Aligned_cols=75 Identities=8% Similarity=0.087 Sum_probs=64.4
Q ss_pred CcceecCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250 87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (300)
Q Consensus 87 gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~ 165 (300)
.++.+.++.++++. ..++|+++.+.+++.+.+.++.|++.|+++||-+.||..+..++|.++|+++|+. ++.||=
T Consensus 101 ~~~~~~t~~~a~~~---lpe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~Glr-vmGPNC 175 (555)
T PRK06091 101 SLTQVRRWDSACQK---LPDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLL-VMGPDC 175 (555)
T ss_pred CCcccccHHHHHhc---CCCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCE-EECCCC
Confidence 45667788887753 2457999989999999999999999999999988899887788999999999975 789998
No 155
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=96.49 E-value=0.016 Score=48.40 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=74.5
Q ss_pred ceEEEEcCCchH---HHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEI---GRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrM---G~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
.+|+|+|+|-+= +-.+.+.+. +.|++++.+ ++...| .++ +|-++|.|+.++- .+.|+|.-
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~-~~GY~ViPV-NP~~~~---~ei------LG~k~y~sL~dIp------e~IDiVdv 79 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQ-QKGYRVIPV-NPKLAG---EEI------LGEKVYPSLADIP------EPIDIVDV 79 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHH-HCCCEEEee-Ccccch---HHh------cCchhhhcHHhCC------CCCcEEEE
Confidence 579999998654 445666655 578999873 333222 333 4668899999885 58999999
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCC
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i 157 (300)
|-.|+.+.+.++.+++.+..+|=.-.|...++. .+.+++.|.
T Consensus 80 FR~~e~~~~i~~eal~~~~kv~W~QlGi~n~ea---~~~~~~aG~ 121 (140)
T COG1832 80 FRRSEAAPEVAREALEKGAKVVWLQLGIRNEEA---AEKARDAGL 121 (140)
T ss_pred ecChhhhHHHHHHHHhhCCCeEEEecCcCCHHH---HHHHHHhCc
Confidence 999999999999999999999987778654443 334555444
No 156
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.46 E-value=0.043 Score=50.59 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=89.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC--------CcEEEEEEecCC--CCcch------hhhhc-CcCCCCcceecCHHHH
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS--VGEDI------GMVCD-MEQPLEIPVMSDLTMV 97 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~--~g~d~------~~~~g-~~~~~gv~v~~dl~~~ 97 (300)
+++|+++|| |.+|+.+.+.+..-. .+.+|++.|... ..+|. .+|.. +-...+- .-+++++
T Consensus 3 ~vnVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~--alsLdaL 79 (364)
T KOG0455|consen 3 KVNVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGS--ALSLDAL 79 (364)
T ss_pred cccEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCC--cccHHHH
Confidence 478999998 999999998876432 257888887421 11221 11110 0011111 1247788
Q ss_pred HhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCC--HHHHHHHHHHhhhCCCeEEEcCCCcHHHHH--H
Q 022250 98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQ--LETVSALSAFCDKASMGCLIAPTLSIGSIL--L 172 (300)
Q Consensus 98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~--~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l--l 172 (300)
++.++....+-++||.|......+....+++.|+.++.-.- .|+ .+..+.|....+ .|-++----++|+-| +
T Consensus 80 ia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~---s~~fi~HEatVGAGLPiI 156 (364)
T KOG0455|consen 80 IAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSK---SPRFIRHEATVGAGLPII 156 (364)
T ss_pred HHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCC---CCceEEeeccccCCchhH
Confidence 77666667788999999999999999999999999885432 454 345555544433 344444445555543 3
Q ss_pred HHHHHHhccCCCCeEEEE
Q 022250 173 QQAAISASFHYKNVEIVE 190 (300)
Q Consensus 173 ~~~a~~~~~~~~dieIiE 190 (300)
.-+-+.++ ....++-||
T Consensus 157 s~L~eiI~-tGDev~kIe 173 (364)
T KOG0455|consen 157 SSLNEIIS-TGDEVHKIE 173 (364)
T ss_pred HHHHHHHh-cCCceeEEE
Confidence 33333333 344455444
No 157
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.43 E-value=0.023 Score=54.37 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=59.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
.+|+|+|+ |.||+.+++.+.. .+++++....+.. +. ...+ ...|+.+. |.+++++ .+|+|+...+
T Consensus 18 ktIgIIG~-GsmG~AlA~~L~~-sG~~Vvv~~r~~~--~s-~~~A---~~~G~~~~-s~~eaa~------~ADVVvLaVP 82 (330)
T PRK05479 18 KKVAIIGY-GSQGHAHALNLRD-SGVDVVVGLREGS--KS-WKKA---EADGFEVL-TVAEAAK------WADVIMILLP 82 (330)
T ss_pred CEEEEEee-HHHHHHHHHHHHH-CCCEEEEEECCch--hh-HHHH---HHCCCeeC-CHHHHHh------cCCEEEEcCC
Confidence 68999998 9999999999874 5788775544321 11 1111 12355444 7888874 7899998888
Q ss_pred chhHHHHH-HHHHH---cCCCEEEeCCCCCHHH
Q 022250 116 ASTVYDNV-KQATA---FGMRSVVYVPHIQLET 144 (300)
Q Consensus 116 p~~~~~~~-~~al~---~G~~vVigTTG~~~e~ 144 (300)
++...+.+ ...+. .|. +|+=..|++-..
T Consensus 83 d~~~~~V~~~~I~~~Lk~g~-iL~~a~G~~i~~ 114 (330)
T PRK05479 83 DEVQAEVYEEEIEPNLKEGA-ALAFAHGFNIHF 114 (330)
T ss_pred HHHHHHHHHHHHHhcCCCCC-EEEECCCCChhh
Confidence 77776555 32332 233 445556887643
No 158
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.42 E-value=0.019 Score=52.44 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=26.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
..||.|+|+ |.+|..+++.+.. .++.=+.++|.
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~-~Gvg~i~lvD~ 56 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAA-AGVGNLTLLDF 56 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEEeC
Confidence 468999998 9999999999875 46655666775
No 159
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=96.41 E-value=0.0044 Score=59.76 Aligned_cols=35 Identities=34% Similarity=0.483 Sum_probs=30.5
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhc----CCcEEEEEEec
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDS 69 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd~ 69 (300)
|++||+|+|+ ||+||.+.+++.+. +++|+|++-|+
T Consensus 2 m~ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 2 APIKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred CceEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 5689999998 99999999998764 68999999873
No 160
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.41 E-value=0.012 Score=55.66 Aligned_cols=80 Identities=24% Similarity=0.270 Sum_probs=49.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVID 112 (300)
..||+|+|+ |.||+.+++.+.. .+..-+.+++++. ..+.+++ ..+|..+ ++++.+.+ .++|+||.
T Consensus 178 ~~~V~ViGa-G~iG~~~a~~L~~-~g~~~V~v~~r~~--~ra~~la---~~~g~~~~~~~~~~~~l------~~aDvVi~ 244 (311)
T cd05213 178 GKKVLVIGA-GEMGELAAKHLAA-KGVAEITIANRTY--ERAEELA---KELGGNAVPLDELLELL------NEADVVIS 244 (311)
T ss_pred CCEEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHH---HHcCCeEEeHHHHHHHH------hcCCEEEE
Confidence 478999998 9999999998875 4555566677653 2222333 2233222 24566666 36899998
Q ss_pred cCCchhHHHHHHHHH
Q 022250 113 FTDASTVYDNVKQAT 127 (300)
Q Consensus 113 fT~p~~~~~~~~~al 127 (300)
+|......+....++
T Consensus 245 at~~~~~~~~~~~~~ 259 (311)
T cd05213 245 ATGAPHYAKIVERAM 259 (311)
T ss_pred CCCCCchHHHHHHHH
Confidence 886555444444443
No 161
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=96.40 E-value=0.0097 Score=56.90 Aligned_cols=97 Identities=24% Similarity=0.222 Sum_probs=60.3
Q ss_pred eEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh--hc-----CcCCCCccee--c
Q 022250 37 KVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV--CD-----MEQPLEIPVM--S 92 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~~~~--~g-----~~~~~gv~v~--~ 92 (300)
||+|+|+ ||+||.+.+++.+. +++++|++-|.. ..|+--+++ .+ ...+..+.++ .
T Consensus 1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGF-GRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEcc-ChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 7999998 99999999998776 589999987731 011100000 00 0000012222 1
Q ss_pred CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (300)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (300)
+++++-= .+.++|+|+++|-.....+.+..+++.|...|+=+
T Consensus 80 dp~~~~w---~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS 121 (327)
T TIGR01534 80 DPSDLPW---KALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS 121 (327)
T ss_pred CcccCch---hhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence 3333210 01378999999988888889999999997766544
No 162
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=96.39 E-value=0.025 Score=53.77 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=27.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (300)
++||.|.|++|-+|+.+++.+.+. +.+++++.
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d 46 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFL-NQTVIGLD 46 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHC-CCEEEEEe
Confidence 579999999999999999999864 68887653
No 163
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.0097 Score=56.36 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC------CchhHHH
Q 022250 48 GRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYD 121 (300)
Q Consensus 48 G~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT------~p~~~~~ 121 (300)
|+...-.+.-.+.+++++++|....+.+....++. ...++|+.++.+++++ ...|++|.-. .|+...+
T Consensus 15 ~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~-~~~~vpii~s~~~~~e-----~~~e~liIgia~~gG~~~~~~~~ 88 (339)
T COG3367 15 GKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGG-DKADVPIISSVEEALE-----GLAEALIIGIAPPGGVLPESWRE 88 (339)
T ss_pred chhhhhhhcccccceeeeEEeeeccccccHHHhCC-ccCCCcccccHHHHHh-----cCcceEEEEeecCCCcCcHHHHH
Confidence 44444444434459999999987766444444433 3679999999999996 3448777654 3566678
Q ss_pred HHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCe
Q 022250 122 NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 158 (300)
Q Consensus 122 ~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~ 158 (300)
.+..|+++|++||.|---+ -++..++.++|++.|+.
T Consensus 89 ~i~eAl~~G~nVvsglh~~-ls~dp~~~k~A~~~G~r 124 (339)
T COG3367 89 YIVEALEAGMNVVSGLHSF-LSDDPEFVKLAERTGVR 124 (339)
T ss_pred HHHHHHHhCchhhhhhHHH-hhcChHHHHHHHHcCCe
Confidence 9999999999999775544 45667899999998874
No 164
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.37 E-value=0.062 Score=53.86 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=69.8
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-cCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
+|+++|. |.||+.+++.+.+ .+++++ ++|++. .....+... ....++..+++++++.++ ..++|+||-+-+
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~-~G~~V~-v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~---l~~~dvIil~v~ 72 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMAD-HGFTVS-VYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQS---LERPRKIMLMVK 72 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHh-cCCeEE-EEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhh---cCCCCEEEEECC
Confidence 4899997 9999999999985 477765 577643 222223210 000124556778777642 136898886665
Q ss_pred c-hhHHHHHHH---HHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250 116 A-STVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (300)
Q Consensus 116 p-~~~~~~~~~---al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv 169 (300)
+ +.+.+.+.. +++.|.-+|-++|....+..+...+ .++.++. ++..-.|=|.
T Consensus 73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~~~gi~-fvdapVsGG~ 128 (467)
T TIGR00873 73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LKAKGIL-FVGSGVSGGE 128 (467)
T ss_pred CcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HHhcCCE-EEcCCCCCCH
Confidence 5 444444433 3455655665666554444444444 4455665 4444444443
No 165
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=96.36 E-value=0.0087 Score=56.48 Aligned_cols=87 Identities=21% Similarity=0.183 Sum_probs=61.6
Q ss_pred EecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC------CchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250 67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHI 140 (300)
Q Consensus 67 vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT------~p~~~~~~~~~al~~G~~vVigTTG~ 140 (300)
+|++..|++++++++. ..++|++++++++ . ..+|++|.-. .|+.-.+.+..|+++|++||.|---+
T Consensus 1 ID~~~aG~~a~e~~~~--~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~~ 72 (301)
T PF07755_consen 1 IDSRLAGKDAGEVLGG--KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHDF 72 (301)
T ss_dssp E-TTTTTSBHHHCCSS--SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS-
T ss_pred CCcccCCCcHHHhcCC--CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChhh
Confidence 5777889999999985 3899999999999 3 5899888633 36777899999999999999986542
Q ss_pred CHHHHHHHHHHhhhCCCeEEEc
Q 022250 141 QLETVSALSAFCDKASMGCLIA 162 (300)
Q Consensus 141 ~~e~~~~L~~~a~~~~i~iv~a 162 (300)
..+..+|.++|+++|+.++--
T Consensus 73 -L~ddpel~~~A~~~g~~i~Dv 93 (301)
T PF07755_consen 73 -LSDDPELAAAAKKNGVRIIDV 93 (301)
T ss_dssp -HCCHHHHHCCHHCCT--EEET
T ss_pred -hccCHHHHHHHHHcCCeEeec
Confidence 234567899999999887743
No 166
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.33 E-value=0.032 Score=49.89 Aligned_cols=95 Identities=16% Similarity=0.106 Sum_probs=54.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc----CcCCCCc--ce-ecCHHHHHhcccccCCcc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----MEQPLEI--PV-MSDLTMVLGSISQSKARA 108 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g----~~~~~gv--~v-~~dl~~~l~~~~~~~~~D 108 (300)
|||+|+|++|.||+.++..+.+ .+.+++. ++++. +.+..+.. .....++ .+ ..+..+++ ..+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~-~G~~V~v-~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~------~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAK-AGNKIII-GSRDL--EKAEEAAAKALEELGHGGSDIKVTGADNAEAA------KRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHh-CCCEEEE-EEcCH--HHHHHHHHHHHhhccccCCCceEEEeChHHHH------hcCC
Confidence 5899998449999999998875 4677763 45432 11111110 0001121 12 23555665 3789
Q ss_pred EEEEcCCchhHHHHHHHHHH--cCCCEEEeCC-CCC
Q 022250 109 VVIDFTDASTVYDNVKQATA--FGMRSVVYVP-HIQ 141 (300)
Q Consensus 109 VVIDfT~p~~~~~~~~~al~--~G~~vVigTT-G~~ 141 (300)
+||-+.++....+.+..... .+ .+|+-++ |++
T Consensus 71 vVilavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~ 105 (219)
T TIGR01915 71 VVILAVPWDHVLKTLESLRDELSG-KLVISPVVPLA 105 (219)
T ss_pred EEEEECCHHHHHHHHHHHHHhccC-CEEEEeccCce
Confidence 99988888877776654432 24 4555544 654
No 167
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.32 E-value=0.027 Score=52.44 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=26.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
..||+|+|+ |.||..++..+.. .+++++ ++|.+
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~-~G~~V~-l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCAL-AGYDVL-LNDVS 36 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHH-CCCeEE-EEeCC
Confidence 368999998 9999999998874 577766 46754
No 168
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=96.30 E-value=0.054 Score=49.78 Aligned_cols=135 Identities=11% Similarity=0.093 Sum_probs=81.5
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
++++|.|+|.| .=++.+++.+...+...++.. .++. .+..+..+-....|---.+-+.+.+. +.+.|++||
T Consensus 1 ~~~~ilvlGGT-~Dar~la~~L~~~~~~~~~ss~t~~g---~~l~~~~~~~~~~G~l~~e~l~~~l~----e~~i~llID 72 (257)
T COG2099 1 SMMRILLLGGT-SDARALAKKLAAAPVDIILSSLTGYG---AKLAEQIGPVRVGGFLGAEGLAAFLR----EEGIDLLID 72 (257)
T ss_pred CCceEEEEecc-HHHHHHHHHhhccCccEEEEEccccc---ccchhccCCeeecCcCCHHHHHHHHH----HcCCCEEEE
Confidence 46889999986 558999999987774444332 2221 11111000000000000122334444 478999999
Q ss_pred cCCchhH---HHHHHHHHHcCCCEE-EeCCCCCH--------HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhc
Q 022250 113 FTDASTV---YDNVKQATAFGMRSV-VYVPHIQL--------ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180 (300)
Q Consensus 113 fT~p~~~---~~~~~~al~~G~~vV-igTTG~~~--------e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~ 180 (300)
.|||-+. ...++.|-+.|+|.+ -+-|+|.. +..+++.+++++.+-.++. .+|.+-+..+.+...
T Consensus 73 ATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVfl----t~G~~~l~~f~~~~~ 148 (257)
T COG2099 73 ATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFL----TTGRQNLAHFVAADA 148 (257)
T ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEE----ecCccchHHHhcCcc
Confidence 9999776 556678899999988 45566543 3455666667666556665 678877766664443
No 169
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.30 E-value=0.023 Score=53.52 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=70.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVID 112 (300)
..||+|+|+ |++|+.+++.+.. -+.++.. +|++. .. .+.+ ...|... ++++.+.+ .++|+||+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~-~Ga~V~v-~~r~~--~~-~~~~---~~~G~~~~~~~~l~~~l------~~aDiVI~ 216 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKA-LGANVTV-GARKS--AH-LARI---TEMGLSPFHLSELAEEV------GKIDIIFN 216 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHH-CCCEEEE-EECCH--HH-HHHH---HHcCCeeecHHHHHHHh------CCCCEEEE
Confidence 479999998 9999999998875 4676554 56542 11 1111 1233332 34666776 47999998
Q ss_pred cCCchhHHHHHHHHHHcCCCEE-EeC-CCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250 113 FTDASTVYDNVKQATAFGMRSV-VYV-PHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vV-igT-TG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv 169 (300)
.+++....+.....++.+.-+| +++ +|-++ + +.++++|+++++.+|..=++
T Consensus 217 t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd-----~-~~a~~~Gv~~~~~~~lpg~v 269 (296)
T PRK08306 217 TIPALVLTKEVLSKMPPEALIIDLASKPGGTD-----F-EYAEKRGIKALLAPGLPGKV 269 (296)
T ss_pred CCChhhhhHHHHHcCCCCcEEEEEccCCCCcC-----e-eehhhCCeEEEEECCCCccC
Confidence 7755433333333344444333 333 34443 2 36788999999999987665
No 170
>PRK08328 hypothetical protein; Provisional
Probab=96.28 E-value=0.028 Score=50.97 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=26.3
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
..||.|+|+ |..|..+++.+.. .++.=+-++|.
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~-~Gvg~i~lvD~ 59 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAA-AGVGRILLIDE 59 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence 468999999 9999999999875 46555556774
No 171
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=96.28 E-value=0.037 Score=54.91 Aligned_cols=122 Identities=10% Similarity=0.080 Sum_probs=71.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCC---Ccchhhh----hcCc------------C--CCCccee-
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV---GEDIGMV----CDME------------Q--PLEIPVM- 91 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~---g~d~~~~----~g~~------------~--~~gv~v~- 91 (300)
+.||+|.|+||-+|+..++.+.+.|+ +++++....... ...+.++ +.+. . ..+..++
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~ 136 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP 136 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence 57999999999999999999987765 899887653211 0000000 0000 0 0012333
Q ss_pred --cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250 92 --SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (300)
Q Consensus 92 --~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv 160 (300)
+.+.++.. ..++|+||..-.--+-..-...|+++|+.|....--.--.--+.|.++++++++.++
T Consensus 137 G~egl~~la~----~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~~~Il 203 (454)
T PLN02696 137 GEEGIVEVAR----HPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKIL 203 (454)
T ss_pred CHHHHHHHHc----CCCCCEEEEeCccccchHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcCCeEe
Confidence 34555554 356899987766555555568899999998876421000011345666666665443
No 172
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.26 E-value=0.013 Score=54.61 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=48.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC-
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT- 114 (300)
|||.|+|++|-+|+.+.+.+.+ .++++++. ++.. -|+ .-.+.+.+.+. ..+||+||.+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~--~dl------------~d~~~~~~~~~----~~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKE-RGYEVIAT-SRSD--LDL------------TDPEAVAKLLE----AFKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTC--S-T------------TSHHHHHHHHH----HH--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHhh-CCCEEEEe-Cchh--cCC------------CCHHHHHHHHH----HhCCCeEeccce
Confidence 7999999999999999998875 67888775 4321 111 11223445554 24799999974
Q ss_pred ---------Cchh--------HHHHHHHHHHcCCCEE
Q 022250 115 ---------DAST--------VYDNVKQATAFGMRSV 134 (300)
Q Consensus 115 ---------~p~~--------~~~~~~~al~~G~~vV 134 (300)
.|+. ....++.|.+.|.++|
T Consensus 61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li 97 (286)
T PF04321_consen 61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLI 97 (286)
T ss_dssp ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEE
T ss_pred eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEE
Confidence 2222 2345677778888887
No 173
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.26 E-value=0.027 Score=53.29 Aligned_cols=33 Identities=27% Similarity=0.209 Sum_probs=28.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (300)
|+||.|.|++|-+|+.+++.+.+..+.+++++.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 468999999999999999999866678888753
No 174
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.25 E-value=0.024 Score=53.66 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=55.6
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc--CC---------CCcceecCHHHHHhccc
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--QP---------LEIPVMSDLTMVLGSIS 102 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~--~~---------~gv~v~~dl~~~l~~~~ 102 (300)
||+||+|+|+ |.||..++..+.+. +.++.. ++++..-+...+ .|.. .. ..+...++.+ .+
T Consensus 1 ~~mkI~IiG~-G~mG~~~A~~L~~~-G~~V~~-~~r~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~---- 71 (341)
T PRK08229 1 MMARICVLGA-GSIGCYLGGRLAAA-GADVTL-IGRARIGDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDPA-AL---- 71 (341)
T ss_pred CCceEEEECC-CHHHHHHHHHHHhc-CCcEEE-EecHHHHHHHHh-cCceeecCCCcceecccceeEeccChh-hc----
Confidence 6789999998 99999999988754 677665 454310000000 0100 00 0112334543 33
Q ss_pred ccCCccEEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCH
Q 022250 103 QSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL 142 (300)
Q Consensus 103 ~~~~~DVVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~ 142 (300)
.++|+||.++.+....+.+..... .+..++.-+.|+..
T Consensus 72 --~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 72 --ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred --cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 478999988766665555544433 34444545568864
No 175
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.20 E-value=0.0059 Score=58.62 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=30.8
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
|++||+|+|+ ||+||.+.+.+.+.+++|+|++=|
T Consensus 1 m~~kv~INGf-GRIGR~v~R~~~~~~~~~ivaiNd 34 (342)
T PTZ00353 1 LPITVGINGF-GPVGKAVLFASLTDPLVTVVAVND 34 (342)
T ss_pred CCeEEEEECC-ChHHHHHHHHHHhcCCcEEEEecC
Confidence 4589999998 999999999988778999999876
No 176
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.19 E-value=0.046 Score=49.27 Aligned_cols=124 Identities=18% Similarity=0.207 Sum_probs=68.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh-hhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
..||+|+|+ |.+|..+++.+.. .++.-+-++|.+.. -.+... +.......|-+-.+.+.+.+. +..+++=|+
T Consensus 21 ~~~VlivG~-GglGs~va~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~----~~np~~~i~ 94 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAA-AGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLR----AINPDVEIE 94 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHH----HhCCCCEEE
Confidence 479999998 9999999999875 46666667775321 011111 000000112111112222232 235665554
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S 166 (300)
.-+.....+++...+ .+.++|+.++. +.+....|.++|.+.++|++.+....
T Consensus 95 ~~~~~i~~~~~~~~~-~~~DvVi~~~d-~~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 95 AYNERLDAENAEELI-AGYDLVLDCTD-NFATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred EecceeCHHHHHHHH-hCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 432222233333333 35788888775 33455678888888889988876544
No 177
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.14 E-value=0.031 Score=49.54 Aligned_cols=107 Identities=11% Similarity=0.192 Sum_probs=63.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
++|+|+|+ |+||+.+++.+.+ .+.+++ ++|.+. ....++. ..++....+ .++++. .++|+++-++.
T Consensus 29 k~v~I~G~-G~vG~~~A~~L~~-~G~~Vv-v~D~~~--~~~~~~~---~~~g~~~v~-~~~l~~-----~~~Dv~vp~A~ 94 (200)
T cd01075 29 KTVAVQGL-GKVGYKLAEHLLE-EGAKLI-VADINE--EAVARAA---ELFGATVVA-PEEIYS-----VDADVFAPCAL 94 (200)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEcCCH--HHHHHHH---HHcCCEEEc-chhhcc-----ccCCEEEeccc
Confidence 68999998 9999999998875 688998 677642 1222222 122433333 355654 47999985543
Q ss_pred chhH-HHHHHHHHHcCCCEEEeCC-C-CC-HHHHHHHHHHhhhCCCeEEEcCCC
Q 022250 116 ASTV-YDNVKQATAFGMRSVVYVP-H-IQ-LETVSALSAFCDKASMGCLIAPTL 165 (300)
Q Consensus 116 p~~~-~~~~~~al~~G~~vVigTT-G-~~-~e~~~~L~~~a~~~~i~iv~a~N~ 165 (300)
.... .+++ .+.+.++|++-. + ++ ++. .+.-+++| ++|.|-|
T Consensus 95 ~~~I~~~~~---~~l~~~~v~~~AN~~~~~~~~----~~~L~~~G--i~~~Pd~ 139 (200)
T cd01075 95 GGVINDDTI---PQLKAKAIAGAANNQLADPRH----GQMLHERG--ILYAPDY 139 (200)
T ss_pred ccccCHHHH---HHcCCCEEEECCcCccCCHhH----HHHHHHCC--CEEeCce
Confidence 3222 3333 345688888865 3 44 332 22235544 4565644
No 178
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.12 E-value=0.036 Score=51.60 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=55.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--------hh---cCc-------CCCCcceecCHHH
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--------VC---DME-------QPLEIPVMSDLTM 96 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~--------~~---g~~-------~~~gv~v~~dl~~ 96 (300)
.||+|+|+ |.||..++..+.. .+.++. ++|.+... +.+.. +. .+. ....+.+++|+++
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~-~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAF-HGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHh-cCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 68999998 9999999998874 467755 45643200 00000 00 000 0123456788888
Q ss_pred HHhcccccCCccEEEEcCCch--hHHHHHHH---HHHcCCCEEEeCCCCCHHH
Q 022250 97 VLGSISQSKARAVVIDFTDAS--TVYDNVKQ---ATAFGMRSVVYVPHIQLET 144 (300)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~--~~~~~~~~---al~~G~~vVigTTG~~~e~ 144 (300)
++ .++|+||.+.+.+ ...+.+.. ++..+..+++-|++++..+
T Consensus 81 a~------~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~ 127 (287)
T PRK08293 81 AV------KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ 127 (287)
T ss_pred Hh------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence 77 3789999776522 22333332 2333333334455666544
No 179
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.12 E-value=0.032 Score=51.90 Aligned_cols=99 Identities=12% Similarity=0.153 Sum_probs=56.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------cCc----C-------CCCcceecCHH
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------DME----Q-------PLEIPVMSDLT 95 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---------g~~----~-------~~gv~v~~dl~ 95 (300)
-||+|+|+ |.||..++..+.+ .++++. ++|.+. ..+..+. +.. . ...+..+++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~-~G~~V~-~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 76 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAV-SGFQTT-LVDIKQ--EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK 76 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHh-CCCcEE-EEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH
Confidence 47999998 9999999998874 477766 467532 1111100 000 0 01234567888
Q ss_pred HHHhcccccCCccEEEEcCCchhH-H-HH---HHHHHHcCCCEEEeCCCCCHHHH
Q 022250 96 MVLGSISQSKARAVVIDFTDASTV-Y-DN---VKQATAFGMRSVVYVPHIQLETV 145 (300)
Q Consensus 96 ~~l~~~~~~~~~DVVIDfT~p~~~-~-~~---~~~al~~G~~vVigTTG~~~e~~ 145 (300)
+++ .++|+||.+.+.+.. . .. +...+..+.-+++-|+.++..++
T Consensus 77 ~~~------~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l 125 (288)
T PRK09260 77 AAV------ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI 125 (288)
T ss_pred Hhh------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 777 478999977644322 1 22 22233334334455667777553
No 180
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.10 E-value=0.029 Score=53.65 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=60.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
++|+|+|+ |+||+.+++.+.+.-++++.+ +|+... ... ...+...+++++++. .+|+|+-..+
T Consensus 147 ~~VgIIG~-G~IG~~vA~~L~~~~g~~V~~-~d~~~~-~~~--------~~~~~~~~~l~ell~------~aDvIvl~lP 209 (332)
T PRK08605 147 LKVAVIGT-GRIGLAVAKIFAKGYGSDVVA-YDPFPN-AKA--------ATYVDYKDTIEEAVE------GADIVTLHMP 209 (332)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCEEEE-ECCCcc-HhH--------HhhccccCCHHHHHH------hCCEEEEeCC
Confidence 68999998 999999999885445788765 665421 111 112333468999984 7899986654
Q ss_pred chhHHHHH-----HHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCC
Q 022250 116 ASTVYDNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (300)
Q Consensus 116 p~~~~~~~-----~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i 157 (300)
....-..+ ...++.|.-+|-.++|.-.++ +.|.++.++..+
T Consensus 210 ~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~~g~i 255 (332)
T PRK08605 210 ATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT-KALLDALDNGLI 255 (332)
T ss_pred CCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHHHhCCe
Confidence 32222222 223445554444444643333 345555555444
No 181
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.06 E-value=0.025 Score=54.80 Aligned_cols=119 Identities=9% Similarity=0.040 Sum_probs=69.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEE---EEEEecCCCCcchhhhhcCcCCCCcceecCHHH--HHhcccccCCccEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEV---AGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM--VLGSISQSKARAVV 110 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eL---vg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~--~l~~~~~~~~~DVV 110 (300)
+||+|+|+||-+|+.+++.+.+++++.+ ...-+....|+.. .+.| ....+. ++++ .+ .++|++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-~f~~----~~~~v~-~~~~~~~~------~~vDiv 68 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP-SFGG----TTGTLQ-DAFDIDAL------KALDII 68 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC-CCCC----CcceEE-cCcccccc------cCCCEE
Confidence 4899999999999999998887777753 3322222222221 1211 112222 2222 33 478998
Q ss_pred EEcCCchhHHHHHHHHHHcCCC-EEEeCC-CC-------------CHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250 111 IDFTDASTVYDNVKQATAFGMR-SVVYVP-HI-------------QLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~-vVigTT-G~-------------~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ 170 (300)
+=+...+...+....+.++|.+ +||-.+ .| +++ .|... .++|+.-+..||=|.-..
T Consensus 69 ffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~---~i~~~-~~~gi~~ianPNCst~~l 139 (366)
T TIGR01745 69 ITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQD---VITDG-LNNGIRTFVGGNCTVSLM 139 (366)
T ss_pred EEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHH---HHHhH-HhCCcCeEECcCHHHHHH
Confidence 8334556668888999999975 455444 23 233 33332 234553367799776543
No 182
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.04 E-value=0.0081 Score=57.24 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=62.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
.+++|+|+ |.||+.+++.+.....++-+.++|++. ..+..++..-..++ +.+++|.++++. ++|+||-+
T Consensus 129 ~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~--~~~~~~~~~~~~~g~~v~~~~~~~eav~------~aDiVita 199 (325)
T TIGR02371 129 SVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTP--STREKFALRASDYEVPVRAATDPREAVE------GCDILVTT 199 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhhCCcEEEeCCHHHHhc------cCCEEEEe
Confidence 67999997 999999999988777888888898753 22222221001234 456789999984 79999977
Q ss_pred CCchhHHHHH-HHHHHcCCCEE-EeC
Q 022250 114 TDASTVYDNV-KQATAFGMRSV-VYV 137 (300)
Q Consensus 114 T~p~~~~~~~-~~al~~G~~vV-igT 137 (300)
|+. .. .++ ...++.|.++. ||+
T Consensus 200 T~s-~~-P~~~~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 200 TPS-RK-PVVKADWVSEGTHINAIGA 223 (325)
T ss_pred cCC-CC-cEecHHHcCCCCEEEecCC
Confidence 732 11 222 34568898886 664
No 183
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.04 E-value=0.045 Score=49.03 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=26.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
..||+|+|+ |.||..+++.+.. .++.=+.++|.+
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~-~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALAR-SGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 468999998 9999999999875 466545567743
No 184
>PRK06046 alanine dehydrogenase; Validated
Probab=96.03 E-value=0.012 Score=56.15 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=62.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-cCCCC--cceecCHHHHHhcccccCCccEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVVI 111 (300)
..+|+|+|+ |.+|+.+++.+...++++.+.++|++. ..+..++.. ...++ +.+++|+++++ . +|+|+
T Consensus 129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~l------~-aDiVv 198 (326)
T PRK06046 129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTK--SSAEKFVERMSSVVGCDVTVAEDIEEAC------D-CDILV 198 (326)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHh------h-CCEEE
Confidence 368999997 999999999998888999999999754 222222210 01234 45578999887 3 89999
Q ss_pred EcCCchhHHHHH-HHHHHcCCCEE-EeC
Q 022250 112 DFTDASTVYDNV-KQATAFGMRSV-VYV 137 (300)
Q Consensus 112 DfT~p~~~~~~~-~~al~~G~~vV-igT 137 (300)
.+|+... ..+ ...++.|.+|. ||+
T Consensus 199 ~aTps~~--P~~~~~~l~~g~hV~~iGs 224 (326)
T PRK06046 199 TTTPSRK--PVVKAEWIKEGTHINAIGA 224 (326)
T ss_pred EecCCCC--cEecHHHcCCCCEEEecCC
Confidence 8875432 222 33467899876 664
No 185
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.02 E-value=0.033 Score=51.97 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=26.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
+.||+|+|+ |.||..++..+.. .+++++ ++|++
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~ 36 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAA-AGMDVW-LLDSD 36 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHh-cCCeEE-EEeCC
Confidence 357999998 9999999999875 478776 46653
No 186
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.00 E-value=0.087 Score=48.28 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=62.3
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-eecC---HHHHHhcccccCC-ccEEE
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSD---LTMVLGSISQSKA-RAVVI 111 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~d---l~~~l~~~~~~~~-~DVVI 111 (300)
||.|.|+||.+|+.+++.+.+ .++++.+....... .. ..+. ..+. -++| +.+++.....-.. +|.++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~-~g~~V~~~~R~~~~-~~---~~~~---~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA-ASVPFLVASRSSSS-SA---GPNE---KHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh-CCCcEEEEeCCCcc-cc---CCCC---ccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 589999999999999999875 57887766543210 00 0111 0111 1233 3444410000024 78887
Q ss_pred EcCCc-----hhHHHHHHHHHHcCCCEEEeCC--CC--CHHHHHHHHHHhhhC-CCeEE-EcCC
Q 022250 112 DFTDA-----STVYDNVKQATAFGMRSVVYVP--HI--QLETVSALSAFCDKA-SMGCL-IAPT 164 (300)
Q Consensus 112 DfT~p-----~~~~~~~~~al~~G~~vVigTT--G~--~~e~~~~L~~~a~~~-~i~iv-~a~N 164 (300)
..+.+ +.....+..|.++|+.-|+-++ +- .......++++.++. +++.. +-|+
T Consensus 73 ~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~ 136 (285)
T TIGR03649 73 LVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPT 136 (285)
T ss_pred EeCCCCCChhHHHHHHHHHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEecc
Confidence 65532 2345667788889975443322 21 111223344555553 66543 4444
No 187
>PLN02778 3,5-epimerase/4-reductase
Probab=95.99 E-value=0.047 Score=50.99 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=29.5
Q ss_pred ecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEE
Q 022250 28 STNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVA 64 (300)
Q Consensus 28 ~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv 64 (300)
+..|..++|||.|.|++|-+|+.+++.+.+ .+.+++
T Consensus 2 ~~~~~~~~~kiLVtG~tGfiG~~l~~~L~~-~g~~V~ 37 (298)
T PLN02778 2 NGTAGSATLKFLIYGKTGWIGGLLGKLCQE-QGIDFH 37 (298)
T ss_pred CCCCCCCCCeEEEECCCCHHHHHHHHHHHh-CCCEEE
Confidence 445666779999999999999999998875 466765
No 188
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=95.98 E-value=0.0032 Score=59.91 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=79.5
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-cCHHHHHhcccccCCccEEEEcCCc
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDFTDA 116 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVIDfT~p 116 (300)
|+|.|. |-..+..+-.+.+.+ +++-+++.+.. ..+...+ ....++.| +.+++++. +.++|.|...-+|
T Consensus 5 v~v~GT-g~~arv~iP~l~e~~-f~v~A~w~Rt~--~ea~a~a---a~~~v~~~t~~~deiLl----~~~vdlv~i~lpp 73 (367)
T KOG2742|consen 5 VGVFGT-GIFARVLIPLLKEEG-FEVKAIWGRTK--TEAKAKA---AEMNVRKYTSRLDEILL----DQDVDLVCISLPP 73 (367)
T ss_pred eeEecc-ChhHhhhhhhhhhcc-chHhhhhchhh--hHHHHhh---hccchhhccccchhhhc----cCCcceeEeccCC
Confidence 999995 999999988777655 88888887632 1112111 23455554 58888885 4677777666788
Q ss_pred hhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhh
Q 022250 117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (300)
Q Consensus 117 ~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~ 154 (300)
..+.++...++..|+|||+.++.-+.++.+.+.++++.
T Consensus 74 ~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s 111 (367)
T KOG2742|consen 74 PLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYS 111 (367)
T ss_pred ccceeeeeccccCCceEEeccCCcchhhhhhHHHHhhc
Confidence 88899999999999999999998666777888877766
No 189
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.97 E-value=0.078 Score=53.22 Aligned_cols=123 Identities=11% Similarity=0.064 Sum_probs=66.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCC-------------CCcchhhhhcCcCCCCcceecCHHHHHhc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS-------------VGEDIGMVCDMEQPLEIPVMSDLTMVLGS 100 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~-------------~g~d~~~~~g~~~~~gv~v~~dl~~~l~~ 100 (300)
||||+|+|+ |.+|..++-.+++. .+++++++ |.+. ......+++..........++|+++++
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i-- 76 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHV-- 76 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHH--
Confidence 579999997 99999999888764 36888875 5211 011122222100001245667777776
Q ss_pred ccccCCccEEEEcC-Cch--------------hHHH---HHHHHHHcCCCEEEeCC---CCCHHHHHHHHHHhhhCCCeE
Q 022250 101 ISQSKARAVVIDFT-DAS--------------TVYD---NVKQATAFGMRSVVYVP---HIQLETVSALSAFCDKASMGC 159 (300)
Q Consensus 101 ~~~~~~~DVVIDfT-~p~--------------~~~~---~~~~al~~G~~vVigTT---G~~~e~~~~L~~~a~~~~i~i 159 (300)
.++|+++.+- +|. .+.+ .+...++.|.-||+.+| |.+++-...|.+........+
T Consensus 77 ----~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v 152 (473)
T PLN02353 77 ----AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQI 152 (473)
T ss_pred ----hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEE
Confidence 3789887653 232 1112 22223345777787877 565544444444221112345
Q ss_pred EEcCCC
Q 022250 160 LIAPTL 165 (300)
Q Consensus 160 v~a~N~ 165 (300)
.++|=|
T Consensus 153 ~~~PEr 158 (473)
T PLN02353 153 LSNPEF 158 (473)
T ss_pred EECCCc
Confidence 555543
No 190
>PLN03139 formate dehydrogenase; Provisional
Probab=95.94 E-value=0.05 Score=53.20 Aligned_cols=66 Identities=21% Similarity=0.095 Sum_probs=46.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-.+|+|+|+ |+||+.+++.+.. -++++.+ +|+.. .+.. .. ...++..++++++++. .+|+|+-..
T Consensus 199 gktVGIVG~-G~IG~~vA~~L~a-fG~~V~~-~d~~~--~~~~-~~---~~~g~~~~~~l~ell~------~sDvV~l~l 263 (386)
T PLN03139 199 GKTVGTVGA-GRIGRLLLQRLKP-FNCNLLY-HDRLK--MDPE-LE---KETGAKFEEDLDAMLP------KCDVVVINT 263 (386)
T ss_pred CCEEEEEee-cHHHHHHHHHHHH-CCCEEEE-ECCCC--cchh-hH---hhcCceecCCHHHHHh------hCCEEEEeC
Confidence 368999997 9999999998874 6899865 67542 1111 11 2345555679999984 789988655
Q ss_pred C
Q 022250 115 D 115 (300)
Q Consensus 115 ~ 115 (300)
+
T Consensus 264 P 264 (386)
T PLN03139 264 P 264 (386)
T ss_pred C
Confidence 3
No 191
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.93 E-value=0.066 Score=47.40 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=63.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--hhcCc-CCCCcceecCHHHHHhcccccCCccEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--VCDME-QPLEIPVMSDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~--~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVV 110 (300)
..||.|+|+ |.+|..+++.+. ..++.=+-++|.+... .+... +.... ...|-+-.....+.+. .-+||+-
T Consensus 19 ~s~VlviG~-gglGsevak~L~-~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~----~lNp~v~ 92 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLV-LAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQ----ELNPNVK 92 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHH----HHCCCCE
Confidence 478999999 889999999987 4677666678753210 11110 00000 0011111111122222 1356654
Q ss_pred EEcCC--chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250 111 IDFTD--ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 111 IDfT~--p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S 166 (300)
|..-. +....++..... ...++|+.++.- .+....+.++|+++++|++++....
T Consensus 93 i~~~~~~~~~~~~~~~~~~-~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 93 LSIVEEDSLSNDSNIEEYL-QKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred EEEEecccccchhhHHHHH-hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 44321 111122222222 246777776543 4455667788888888888776543
No 192
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.93 E-value=0.086 Score=49.58 Aligned_cols=73 Identities=23% Similarity=0.204 Sum_probs=44.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchh--------hhhcCcC---------CCCcceecCHHH
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIG--------MVCDMEQ---------PLEIPVMSDLTM 96 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~--------~~~g~~~---------~~gv~v~~dl~~ 96 (300)
++||+|+|+ |.||..++..+.+ .+++++ ++|++.. ...+. .+...+. ...+....|+++
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~-~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~ 78 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFAR-AGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLAD 78 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHH-CCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHH
Confidence 358999997 9999999998875 477766 4675420 00000 0110000 001346678888
Q ss_pred HHhcccccCCccEEEEcCCc
Q 022250 97 VLGSISQSKARAVVIDFTDA 116 (300)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p 116 (300)
++ .++|+|+.+.+.
T Consensus 79 a~------~~ad~Vi~avpe 92 (308)
T PRK06129 79 AV------ADADYVQESAPE 92 (308)
T ss_pred hh------CCCCEEEECCcC
Confidence 87 378999976643
No 193
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.90 E-value=0.14 Score=53.82 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=61.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCCCcc--eecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVID 112 (300)
.||+|+|+ |.||..+++.+.+.. ..++. ++|++. ...... .+.|+. ..+++++++ .++|+||.
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~-~~d~~~--~~~~~a----~~~g~~~~~~~~~~~~~------~~aDvVil 69 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVV-AVDRRA--KSLELA----VSLGVIDRGEEDLAEAV------SGADVIVL 69 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEE-EEECCh--hHHHHH----HHCCCCCcccCCHHHHh------cCCCEEEE
Confidence 68999997 999999999987542 23544 467643 111111 123332 345677777 37899998
Q ss_pred cCCchhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHH
Q 022250 113 FTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAF 151 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~--G~~vVigTTG~~~e~~~~L~~~ 151 (300)
+++|....+.+...... ...+|+-..+....-.+.+++.
T Consensus 70 avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~ 110 (735)
T PRK14806 70 AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAV 110 (735)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHh
Confidence 88888777666655432 2235554445443334445544
No 194
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.89 E-value=0.15 Score=51.10 Aligned_cols=133 Identities=23% Similarity=0.203 Sum_probs=74.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec--CHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVIDf 113 (300)
-||.|+|. |+.|...++.+. ..+.++++ .|... .....+ .+.|+.+.. +..+.+ .++|+||..
T Consensus 13 ~~v~V~G~-G~sG~aa~~~L~-~~G~~v~~-~D~~~--~~~~~l----~~~g~~~~~~~~~~~~l------~~~D~VV~S 77 (488)
T PRK03369 13 APVLVAGA-GVTGRAVLAALT-RFGARPTV-CDDDP--DALRPH----AERGVATVSTSDAVQQI------ADYALVVTS 77 (488)
T ss_pred CeEEEEcC-CHHHHHHHHHHH-HCCCEEEE-EcCCH--HHHHHH----HhCCCEEEcCcchHhHh------hcCCEEEEC
Confidence 58999998 999999998665 56788776 77432 111111 234554432 233444 368988865
Q ss_pred CC-chhHHHHHHHHHHcCCCEE---------------------EeCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250 114 TD-ASTVYDNVKQATAFGMRSV---------------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGS 169 (300)
Q Consensus 114 T~-p~~~~~~~~~al~~G~~vV---------------------igTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~SiGv 169 (300)
.- |.. .+.+..|.+.|+|++ ||-||-+-. -...|..+-++.+.+.....| +|+
T Consensus 78 pGi~~~-~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn--iG~ 154 (488)
T PRK03369 78 PGFRPT-APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN--IGS 154 (488)
T ss_pred CCCCCC-CHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC--Cch
Confidence 42 332 344555555554443 444443211 123344555555666666677 676
Q ss_pred HHHHHHHHHhccCCCCeEEEEc
Q 022250 170 ILLQQAAISASFHYKNVEIVES 191 (300)
Q Consensus 170 ~ll~~~a~~~~~~~~dieIiE~ 191 (300)
.++..+ . ...|+-|+|.
T Consensus 155 p~~~~~----~-~~~~~~VlE~ 171 (488)
T PRK03369 155 PVLDVL----D-EPAELLAVEL 171 (488)
T ss_pred HHHHhc----c-CCCCEEEEEC
Confidence 664422 1 2346677776
No 195
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.88 E-value=0.068 Score=51.32 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=27.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
..||+|+|+ |.+|..+++.+.. .++.-+.++|.+
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~-aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVR-AGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCC
Confidence 468999998 9999999999875 577556677853
No 196
>PRK07574 formate dehydrogenase; Provisional
Probab=95.86 E-value=0.075 Score=51.97 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=45.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
.+|+|+|+ |+||+.+++.+.. -++++.+ +|+.....+ .. ...++..+.++++++. .+|+|+-..+
T Consensus 193 ktVGIvG~-G~IG~~vA~~l~~-fG~~V~~-~dr~~~~~~---~~---~~~g~~~~~~l~ell~------~aDvV~l~lP 257 (385)
T PRK07574 193 MTVGIVGA-GRIGLAVLRRLKP-FDVKLHY-TDRHRLPEE---VE---QELGLTYHVSFDSLVS------VCDVVTIHCP 257 (385)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCEEEE-ECCCCCchh---hH---hhcCceecCCHHHHhh------cCCEEEEcCC
Confidence 68999998 9999999998874 5888774 665421111 11 1335555678999984 7899986553
No 197
>PRK07411 hypothetical protein; Validated
Probab=95.85 E-value=0.045 Score=53.55 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=60.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCc-------chh---------hhhcCcCCCCcceec-
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGE-------DIG---------MVCDMEQPLEIPVMS- 92 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~-------d~~---------~~~g~~~~~gv~v~~- 92 (300)
..||.|+|| |.+|..+++.+.. .++.=+.++|.+ ..++ |++ .+..+.+...+..+.
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~-~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAA-AGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 468999999 9999999998874 566666677732 1111 111 011111111222221
Q ss_pred -----CHHHHHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-CC
Q 022250 93 -----DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI 140 (300)
Q Consensus 93 -----dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G~ 140 (300)
+..+.+ .++|+|||++..-.. .-.-..|.+.++|+|.|.. ||
T Consensus 116 ~~~~~~~~~~~------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 116 RLSSENALDIL------APYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred ccCHHhHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence 234455 479999999864444 4455788999999998754 54
No 198
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.83 E-value=0.09 Score=46.61 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=65.3
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-hcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~-~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
..||.|+|+ |.+|..+++.+.. .++.=+-++|.+.. -.+.... +-.....|-+-.+.+.+.+. .-.+++-|+
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~-~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~----~~np~v~i~ 94 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAG-AGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLR----ELNSDIQVT 94 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHH-cCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHH----HhCCCCEEE
Confidence 468999998 9999999999875 46544445775321 0111110 00000111111111222222 134555544
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHH
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 168 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiG 168 (300)
.-......+++...+ .+..+|+.++.- .+....|.++|++.++|++.+.+....
T Consensus 95 ~~~~~i~~~~~~~~~-~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g~~ 148 (202)
T TIGR02356 95 ALKERVTAENLELLI-NNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVGFG 148 (202)
T ss_pred EehhcCCHHHHHHHH-hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeccCe
Confidence 322222223333333 467788877643 334556888888888888887655433
No 199
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.83 E-value=0.048 Score=44.84 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=59.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-hcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~-~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
.||+|+|+ |.+|..+++.+.. .++.=+-++|.+.. -.+.... .......|.+-.+-+.+.+.+ ..|++=|..
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~-~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~----~np~~~v~~ 76 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLAR-SGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQE----INPDVEVEA 76 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHH-HTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHH----HSTTSEEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHH-hCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHH----hcCceeeee
Confidence 68999998 9999999999875 46655557885321 0111110 000001122111222222321 233433332
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 164 (300)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N 164 (300)
-+.....++....+ .+..+|+.++.- .+....|.++|++.++|++++..
T Consensus 77 ~~~~~~~~~~~~~~-~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~ 125 (135)
T PF00899_consen 77 IPEKIDEENIEELL-KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGV 125 (135)
T ss_dssp EESHCSHHHHHHHH-HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEE
T ss_pred eecccccccccccc-cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEe
Confidence 21111233333333 466777776543 23445677778888888776543
No 200
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=95.83 E-value=0.059 Score=51.49 Aligned_cols=112 Identities=16% Similarity=0.142 Sum_probs=64.9
Q ss_pred ccccCcccccccceeeEee---cCCC--CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcC
Q 022250 10 CRMHHISQNVKAKRFISCS---TNPP--QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ 84 (300)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~---~~~~--~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~ 84 (300)
||.+..-+.+|.+++..+. ..+. -.-.+++|+|. |++|+++++.++ -=++++.. +++... +... .
T Consensus 116 R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~-GrIG~avA~r~~-~Fgm~v~y-~~~~~~-~~~~------~ 185 (324)
T COG1052 116 RRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGL-GRIGQAVARRLK-GFGMKVLY-YDRSPN-PEAE------K 185 (324)
T ss_pred hchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECC-CHHHHHHHHHHh-cCCCEEEE-ECCCCC-hHHH------h
Confidence 4555555666777666653 1111 12378999996 999999999877 56788765 554321 1111 1
Q ss_pred CCCcceecCHHHHHhcccccCCccEEEEcCC--chhH-HHHHHHHHHcCCCEEEeCC
Q 022250 85 PLEIPVMSDLTMVLGSISQSKARAVVIDFTD--ASTV-YDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 85 ~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~--p~~~-~~~~~~al~~G~~vVigTT 138 (300)
..+.. |-+++++++ .+|+++...+ |++. .=+.+.....+..+++=-|
T Consensus 186 ~~~~~-y~~l~ell~------~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNt 235 (324)
T COG1052 186 ELGAR-YVDLDELLA------ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNT 235 (324)
T ss_pred hcCce-eccHHHHHH------hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEEC
Confidence 22333 344999995 7899887653 3322 2233344445554444444
No 201
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.057 Score=51.21 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=76.3
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCc------chhhhh--cCc------------CCC-Cc----ce--
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE------DIGMVC--DME------------QPL-EI----PV-- 90 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~------d~~~~~--g~~------------~~~-gv----~v-- 90 (300)
|.|+|| |.+|+-++..+. ..+++=+-++|.+.... ....+. |.. .++ .+ ..
T Consensus 77 VVVVG~-GgVGSwv~nmL~-RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~~ 154 (430)
T KOG2018|consen 77 VVVVGA-GGVGSWVANMLL-RSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLWT 154 (430)
T ss_pred EEEEec-CchhHHHHHHHH-HhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhhcC
Confidence 889999 999999999887 46887777777321100 000010 000 000 11 11
Q ss_pred ecCHHHHHhcccccCCccEEEEcC-CchhHHHHHHHHHHcCCCEEEeCC------------------CC---CHHHHHHH
Q 022250 91 MSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP------------------HI---QLETVSAL 148 (300)
Q Consensus 91 ~~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vVigTT------------------G~---~~e~~~~L 148 (300)
.++-++++. .+||-|||+- +-+.-.+.+.+|-.+|++|+..|- .. +..-..+|
T Consensus 155 ~~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrL 229 (430)
T KOG2018|consen 155 SSSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADISETEEDPLSRSVRRRL 229 (430)
T ss_pred CCchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhhccccccCcHHHHHHHHH
Confidence 245666764 6899999987 556668999999999999997641 01 11223456
Q ss_pred HHHhhhCCCeEEEcCCC
Q 022250 149 SAFCDKASMGCLIAPTL 165 (300)
Q Consensus 149 ~~~a~~~~i~iv~a~N~ 165 (300)
+..--..|||+|+|.-.
T Consensus 230 rk~GI~~GIpVVFS~Ek 246 (430)
T KOG2018|consen 230 RKRGIEGGIPVVFSLEK 246 (430)
T ss_pred HHhccccCCceEEecCC
Confidence 66666678999986543
No 202
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=95.74 E-value=0.063 Score=51.37 Aligned_cols=145 Identities=17% Similarity=0.218 Sum_probs=85.4
Q ss_pred CCcceEEEEcCCchHHHHHHHHHHhc---------------------CCcEEEEEEec--CCCCcchhhhhcCc------
Q 022250 33 QSNIKVIINGAVKEIGRAAVIAVTKA---------------------RGMEVAGAIDS--HSVGEDIGMVCDME------ 83 (300)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~---------------------~~~eLvg~vd~--~~~g~d~~~~~g~~------ 83 (300)
.+|+||+|+|- |.-.+.+++-+... .+.|+++.+|. ++.|+|+.+.+--.
T Consensus 3 ~~~vrv~iiG~-Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~ 81 (362)
T COG1260 3 TTMVRVAIIGV-GNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK 81 (362)
T ss_pred cceEEEEEEec-cchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhcChhHHHHHhcCCCCCce
Confidence 35899999997 99999988877542 25688888874 34666664432100
Q ss_pred -----CCCCccee---------cCHHHHHhc---c-----------cccCCccEEEEcCC---chhHHHHHHHHHHcCCC
Q 022250 84 -----QPLEIPVM---------SDLTMVLGS---I-----------SQSKARAVVIDFTD---ASTVYDNVKQATAFGMR 132 (300)
Q Consensus 84 -----~~~gv~v~---------~dl~~~l~~---~-----------~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~~ 132 (300)
...|+.+. ..+.+.+.. . ++..+.|+++.|.+ .++..-++..++++|++
T Consensus 82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a 161 (362)
T COG1260 82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA 161 (362)
T ss_pred eecccccCCcEecccCCcCcccchhhhhcchhhcccccccccceeeecccCccccccccccchhHHHHHHHHHHHHcCCc
Confidence 11122211 012222220 0 11233444455543 45567788999999999
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHH-HHHHhc
Q 022250 133 SVVYVPHIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQ-AAISAS 180 (300)
Q Consensus 133 vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~-~a~~~~ 180 (300)
.|-.+|-+.... ..+.+.++++|+|++ .=-. .+|..++.+ +++.++
T Consensus 162 fvN~~P~~iA~d-P~~~~~fee~g~pi~-GDD~ksq~GaTi~h~~La~~f~ 210 (362)
T COG1260 162 FVNAIPVFIASD-PAWVELFEEKGLPIA-GDDIKSQTGATILHRVLAQLFA 210 (362)
T ss_pred eecccCccccCC-HHHHHHHHHcCCcee-ccchhhhcCCceeHHHHHHHHH
Confidence 999998543221 347777899888854 2333 478876654 444444
No 203
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.74 E-value=0.11 Score=48.12 Aligned_cols=137 Identities=15% Similarity=0.095 Sum_probs=83.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCcCCC------------CcceecCH
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDMEQPL------------EIPVMSDL 94 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~---~g~~~~~------------gv~v~~dl 94 (300)
..||+|.|+ |++|+..++.+.+ .+..++++.|+ ++.|-|..++ ....... +.. +-+.
T Consensus 38 g~~vaIqGf-GnVG~~~a~~L~e-~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~~ 114 (254)
T cd05313 38 GKRVAISGS-GNVAQYAAEKLLE-LGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFEG 114 (254)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeCC
Confidence 379999998 9999999998874 68999999984 3445554433 1000000 111 2245
Q ss_pred HHHHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH---H
Q 022250 95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---G 168 (300)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si---G 168 (300)
++++. .++||+|=+..-... .+++....+++..+|+|-- + ++++. . +.-+++ .+++.|-+.. |
T Consensus 115 ~~~~~-----~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a-~---~~L~~r--GI~vvPD~laNaGG 183 (254)
T cd05313 115 KKPWE-----VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEA-I---EVFRQA--GVLFAPGKAANAGG 183 (254)
T ss_pred cchhc-----CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHH-H---HHHHHC--CcEEECchhhcCCC
Confidence 56765 689999976654443 6777777778999999976 3 45532 2 223344 4566676643 2
Q ss_pred HHH-HHHHHHHhccCCCC
Q 022250 169 SIL-LQQAAISASFHYKN 185 (300)
Q Consensus 169 v~l-l~~~a~~~~~~~~d 185 (300)
|.+ -.+..+.+..++|+
T Consensus 184 Vivs~~E~~qn~~~~~w~ 201 (254)
T cd05313 184 VAVSGLEMSQNSQRLSWT 201 (254)
T ss_pred eeeeHHHhhcccccccCC
Confidence 211 13445555555555
No 204
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.74 E-value=0.068 Score=46.35 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=24.7
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
||+|+|+ |.||..+++.+.. .++.=+-++|.
T Consensus 1 ~VlViG~-GglGs~ia~~La~-~Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLAR-SGVGNLKLVDF 31 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence 6999998 9999999999875 46654556774
No 205
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.72 E-value=0.15 Score=50.27 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=27.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
++||+|+|. |.||..++..+.+ .++++++ +|.+
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~-~G~~V~~-~D~~ 35 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFAS-RQKQVIG-VDIN 35 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHh-CCCEEEE-EeCC
Confidence 479999997 9999999998875 4788765 6654
No 206
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=95.70 E-value=0.059 Score=52.37 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=43.3
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
.+.||+|+|++|.||+.+++.+.+ .++++.+ +|++. .++.++++ .++|+||.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~-~G~~V~~-~d~~~-------------------~~~~~~~~------~~aDlVila 149 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTL-SGYQVRI-LEQDD-------------------WDRAEDIL------ADAGMVIVS 149 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHH-CCCeEEE-eCCCc-------------------chhHHHHH------hcCCEEEEe
Confidence 358899999559999999999875 4666543 44321 01334444 256777766
Q ss_pred CCchhHHHHHHHHHH
Q 022250 114 TDASTVYDNVKQATA 128 (300)
Q Consensus 114 T~p~~~~~~~~~al~ 128 (300)
++++...+.+.....
T Consensus 150 vP~~~~~~~~~~l~~ 164 (374)
T PRK11199 150 VPIHLTEEVIARLPP 164 (374)
T ss_pred CcHHHHHHHHHHHhC
Confidence 666665555554433
No 207
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=95.69 E-value=0.13 Score=51.52 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=58.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceecC---HHHHHhcccccCCccEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD---LTMVLGSISQSKARAVV 110 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d---l~~~l~~~~~~~~~DVV 110 (300)
-||.|+|+ |..|+.+++.+.+++ +++++|.+|.+.. ...++|++.+ +.+++. ..++|-|
T Consensus 144 rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~-----------~g~~VpvlG~~~dL~~~v~----~~~IdeV 207 (463)
T PRK10124 144 RMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKP-----------GGVSNDWAGNLQQLVEDAK----AGKIHNV 207 (463)
T ss_pred CcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCcc-----------ccCCCCcCCCHHHHHHHHH----hCCCCEE
Confidence 57999998 999999999998776 5899999985431 0123444544 444444 3578877
Q ss_pred EEcCC---chhHHHHHHHHHHcCCCEEEe
Q 022250 111 IDFTD---ASTVYDNVKQATAFGMRSVVY 136 (300)
Q Consensus 111 IDfT~---p~~~~~~~~~al~~G~~vVig 136 (300)
|-..+ ++...+.+..|.+.++++.+-
T Consensus 208 iIAip~~~~~~l~ell~~~~~~~v~V~iv 236 (463)
T PRK10124 208 YIAMSMCDGARVKKLVRQLADTTCSVLLI 236 (463)
T ss_pred EEeCCCcchHHHHHHHHHHHHcCCeEEEe
Confidence 74432 334466777888899988764
No 208
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.69 E-value=0.18 Score=48.64 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=58.3
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc--eecCHHHHHhcccccCCccEEEEcC
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
||+|+|. |.||..+++.+.+. ++++. +++.+.......... ..++. ..+++++++ .++|+||-++
T Consensus 2 ~I~iIG~-GliG~siA~~L~~~-G~~v~-i~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~------~~aDlVilav 68 (359)
T PRK06545 2 TVLIVGL-GLIGGSLALAIKAA-GPDVF-IIGYDPSAAQLARAL----GFGVIDELAADLQRAA------AEADLIVLAV 68 (359)
T ss_pred eEEEEEe-CHHHHHHHHHHHhc-CCCeE-EEEeCCCHHHHHHHh----cCCCCcccccCHHHHh------cCCCEEEEeC
Confidence 6999997 99999999998753 44443 344332111111111 12221 235677776 4799999888
Q ss_pred CchhHHHHHHHHHH--cCC-CEEEeCCCCCHHHHHHHHHH
Q 022250 115 DASTVYDNVKQATA--FGM-RSVVYVPHIQLETVSALSAF 151 (300)
Q Consensus 115 ~p~~~~~~~~~al~--~G~-~vVigTTG~~~e~~~~L~~~ 151 (300)
+|+...+.+..... ... .+|+-.++...+-.+.+.+.
T Consensus 69 P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 69 PVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred CHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 88877777766553 222 34433334444444444444
No 209
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.69 E-value=0.061 Score=50.09 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=25.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
-||+|+|+ |.||..++..+.. .+++++ ++|.+
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~-~G~~V~-l~d~~ 35 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFAR-TGYDVT-IVDVS 35 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHh-cCCeEE-EEeCC
Confidence 47999998 9999999998875 577766 46753
No 210
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.68 E-value=0.065 Score=52.10 Aligned_cols=96 Identities=20% Similarity=0.321 Sum_probs=59.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCc-------chh---------hhhcCcCCCCccee--
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGE-------DIG---------MVCDMEQPLEIPVM-- 91 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~-------d~~---------~~~g~~~~~gv~v~-- 91 (300)
..||.|+|+ |.+|..+++.+.. .++.=+.++|.+ ..++ |++ .+..+.+...+..+
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~-~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLAS-AGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 468999998 9999999999875 455444566632 1111 111 01111111222222
Q ss_pred ----cCHHHHHhcccccCCccEEEEcCCc-hhHHHHHHHHHHcCCCEEEeCC
Q 022250 92 ----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigTT 138 (300)
+++++++ .++|+|||++.. ++-...-..|.++++|+|.+..
T Consensus 119 ~i~~~~~~~~~------~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~ 164 (370)
T PRK05600 119 RLTAENAVELL------NGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV 164 (370)
T ss_pred ecCHHHHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 2445566 479999999854 4445555789999999998754
No 211
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.62 E-value=0.12 Score=49.71 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=27.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
..||.|+|+ |.+|..+++.+.. .++.=+.++|.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~-aGvg~i~lvD~ 56 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVR-AGVGKVTIVDR 56 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence 478999999 9999999998875 47755667775
No 212
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=95.62 E-value=0.042 Score=51.43 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=53.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC-
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT- 114 (300)
|||.|.|++|.+|+.+.+.+. ++.++++.-..+ .++.-.+.+.+++.+ .+||+||...
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~----~~PDvVIn~AA 59 (281)
T COG1091 1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE---------------LDITDPDAVLEVIRE----TRPDVVINAAA 59 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------ccccChHHHHHHHHh----hCCCEEEECcc
Confidence 459999999999999999876 778888743221 122223456677763 6799999863
Q ss_pred ---------Cch--------hHHHHHHHHHHcCCCEE
Q 022250 115 ---------DAS--------TVYDNVKQATAFGMRSV 134 (300)
Q Consensus 115 ---------~p~--------~~~~~~~~al~~G~~vV 134 (300)
.|+ .....++.|.+.|.++|
T Consensus 60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lV 96 (281)
T COG1091 60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLV 96 (281)
T ss_pred ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEE
Confidence 222 23456678888888877
No 213
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.60 E-value=0.037 Score=49.15 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=23.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVA 64 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv 64 (300)
|||+|+|++|+||+.+++.+.+ .++++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~-~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDD-NGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHh-CCCEEE
Confidence 5899999999999999998764 577754
No 214
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=95.51 E-value=0.16 Score=50.20 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=61.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHH---HHHhcccccCCccE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT---MVLGSISQSKARAV 109 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~---~~l~~~~~~~~~DV 109 (300)
.-||.|+|+ |..|+.+++.+.+++ +++++|.+|.+.. ..+ ...|+|+..+.+ +.++ +.++|.
T Consensus 128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~--~~~------~~~gvpVlg~~~dl~~~i~----~~~vd~ 194 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPD--ART------GVRGVPVLGKLDDLEELIR----EGEVDE 194 (451)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCc--ccc------ccCCCCccCCHHHHHHHHH----hcCCCE
Confidence 367999997 999999999997755 5899999985431 111 124677765544 4454 367887
Q ss_pred EEEcCCc---hhHHHHHHHHHHcCCCEEEe
Q 022250 110 VIDFTDA---STVYDNVKQATAFGMRSVVY 136 (300)
Q Consensus 110 VIDfT~p---~~~~~~~~~al~~G~~vVig 136 (300)
||...+. +...+.+..|.+.|+++.+-
T Consensus 195 ViIA~p~~~~~~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 195 VYIALPLAAEDRILELLDALEDLTVDVRLV 224 (451)
T ss_pred EEEeeCcccHHHHHHHHHHHHhcCCEEEEe
Confidence 7755432 33466778888899988764
No 215
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.50 E-value=0.082 Score=51.70 Aligned_cols=96 Identities=19% Similarity=0.301 Sum_probs=59.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCC-------cchh---------hhhcCcCCCCccee--
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVG-------EDIG---------MVCDMEQPLEIPVM-- 91 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g-------~d~~---------~~~g~~~~~gv~v~-- 91 (300)
..||.|+|+ |.+|..+++.+.. .++.=+.++|.+ ..+ .|++ .+..+.+...+..+
T Consensus 42 ~~~VlviG~-GGlGs~va~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLAA-AGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHHH-cCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 468999999 9999999999874 566555667732 111 1111 01111011122112
Q ss_pred ----cCHHHHHhcccccCCccEEEEcCC-chhHHHHHHHHHHcCCCEEEeCC
Q 022250 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigTT 138 (300)
++..+++ .++|+|||++. +..-...-..|.++++|+|.|..
T Consensus 120 ~i~~~~~~~~~------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~ 165 (392)
T PRK07878 120 RLDPSNAVELF------SQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSI 165 (392)
T ss_pred cCChhHHHHHH------hcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 1334555 47999999984 44445566889999999998754
No 216
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.48 E-value=0.024 Score=46.95 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=45.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
.-||.|+|+ |+||+.++..+... +++=+-+++++. ..+..++....... +.-++++.+.+. ++|+||.
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt~--~ra~~l~~~~~~~~~~~~~~~~~~~~~~------~~DivI~ 81 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRTP--ERAEALAEEFGGVNIEAIPLEDLEEALQ------EADIVIN 81 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESSH--HHHHHHHHHHTGCSEEEEEGGGHCHHHH------TESEEEE
T ss_pred CCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHHHHHHcCccccceeeHHHHHHHHh------hCCeEEE
Confidence 368999998 99999999998865 666455677653 22333321001112 233567777774 7999998
Q ss_pred cCCc
Q 022250 113 FTDA 116 (300)
Q Consensus 113 fT~p 116 (300)
.|+.
T Consensus 82 aT~~ 85 (135)
T PF01488_consen 82 ATPS 85 (135)
T ss_dssp -SST
T ss_pred ecCC
Confidence 7753
No 217
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.47 E-value=0.089 Score=50.53 Aligned_cols=138 Identities=20% Similarity=0.082 Sum_probs=78.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc--ee---cCHHHHHhcccccCCccEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VM---SDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~---~dl~~~l~~~~~~~~~DVV 110 (300)
-+|+|+|+ |.+|...++.+.. -+.+++++-.++..-+++. ++|.. +. .+.-+.+. ..+|++
T Consensus 168 ~~V~I~G~-GGlGh~avQ~Aka-~ga~Via~~~~~~K~e~a~-------~lGAd~~i~~~~~~~~~~~~-----~~~d~i 233 (339)
T COG1064 168 KWVAVVGA-GGLGHMAVQYAKA-MGAEVIAITRSEEKLELAK-------KLGADHVINSSDSDALEAVK-----EIADAI 233 (339)
T ss_pred CEEEEECC-cHHHHHHHHHHHH-cCCeEEEEeCChHHHHHHH-------HhCCcEEEEcCCchhhHHhH-----hhCcEE
Confidence 47999998 9999999997764 4599887543321111222 22221 11 12223332 239999
Q ss_pred EEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHH-hhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEE
Q 022250 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV 189 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~-a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIi 189 (300)
||+..+.+....++.....|.-+++|-++..+...-....+ .++ +.+.=|.+.+ .+-++++.+.+++..-..+|.
T Consensus 234 i~tv~~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~--~~i~GS~~g~--~~d~~e~l~f~~~g~Ikp~i~ 309 (339)
T COG1064 234 IDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKE--ISIVGSLVGT--RADLEEALDFAAEGKIKPEIL 309 (339)
T ss_pred EECCChhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcC--eEEEEEecCC--HHHHHHHHHHHHhCCceeeEE
Confidence 99999666666667777778888899885222111112222 233 5555444444 557777777766544334443
Q ss_pred Ec
Q 022250 190 ES 191 (300)
Q Consensus 190 E~ 191 (300)
|.
T Consensus 310 e~ 311 (339)
T COG1064 310 ET 311 (339)
T ss_pred ee
Confidence 33
No 218
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.46 E-value=0.099 Score=50.74 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=25.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
..||+|+|+ |..|+.+++.+.. .++.=+-++|.
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~-~Gvg~i~lvD~ 167 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAA-AGVGTLGIVDH 167 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence 468999998 9999999998874 46654556774
No 219
>PLN00016 RNA-binding protein; Provisional
Probab=95.42 E-value=0.1 Score=50.30 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=57.8
Q ss_pred CcceEEEE----cCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcch-----hhhhcCcCCCCcce-ecCHHH---HHhc
Q 022250 34 SNIKVIIN----GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-----GMVCDMEQPLEIPV-MSDLTM---VLGS 100 (300)
Q Consensus 34 ~~ikV~V~----Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~-----~~~~g~~~~~gv~v-~~dl~~---~l~~ 100 (300)
|++||.|+ |++|.+|+.+++.+.+ .++++.++.......... ..+..+ ...++.+ ..|+.+ ++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~-~G~~V~~l~R~~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~~~~- 127 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVK-AGHEVTLFTRGKEPSQKMKKEPFSRFSEL-SSAGVKTVWGDPADVKSKVA- 127 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHH-CCCEEEEEecCCcchhhhccCchhhhhHh-hhcCceEEEecHHHHHhhhc-
Confidence 46899999 9999999999999885 478988766432110000 000000 0123332 234543 442
Q ss_pred ccccCCccEEEEcCC--chhHHHHHHHHHHcCCC-EE
Q 022250 101 ISQSKARAVVIDFTD--ASTVYDNVKQATAFGMR-SV 134 (300)
Q Consensus 101 ~~~~~~~DVVIDfT~--p~~~~~~~~~al~~G~~-vV 134 (300)
...+|+||++.. .+.....++.|.+.|+. +|
T Consensus 128 ---~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V 161 (378)
T PLN00016 128 ---GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL 161 (378)
T ss_pred ---cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 247999999864 33456667777788874 55
No 220
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=95.41 E-value=0.16 Score=43.57 Aligned_cols=86 Identities=22% Similarity=0.261 Sum_probs=54.0
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcCC
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD 115 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT~ 115 (300)
++.|+|+ |..|+.+++.+. +.+++++|.+|.+.. ..+. .-.|+|++.+.+++... ..+.+ +++....
T Consensus 1 ~~~I~Ga-g~~g~~~~~~l~-~~g~~vvgfid~~~~--~~~~-----~i~g~pvlg~~~~l~~~---~~~~~~~iiai~~ 68 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAE-DSGWEIVGFLDDNPA--LQGT-----SVDGLPVLGGDEDLLRY---PPDEVDLVVAIGD 68 (201)
T ss_pred CEEEEcC-CHHHHHHHHHHH-hCCCEEEEEEcCCcc--ccCc-----ccCCccEECCHHHHhhh---cccccEEEEEcCC
Confidence 5889998 999999999987 468999999996431 1111 12467777666554321 01233 4444445
Q ss_pred chhHHHHHHHHHHcCCCEE
Q 022250 116 ASTVYDNVKQATAFGMRSV 134 (300)
Q Consensus 116 p~~~~~~~~~al~~G~~vV 134 (300)
+....+....+.+.+.++.
T Consensus 69 ~~~~~~i~~~l~~~g~~~~ 87 (201)
T TIGR03570 69 NKLRRRLFEKLKAKGYRFA 87 (201)
T ss_pred HHHHHHHHHHHHhCCCcce
Confidence 5555666666666665443
No 221
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=95.41 E-value=0.18 Score=49.84 Aligned_cols=88 Identities=20% Similarity=0.296 Sum_probs=60.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHH---HHHhcccccCCccEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT---MVLGSISQSKARAVV 110 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~---~~l~~~~~~~~~DVV 110 (300)
-|+.|+|+ |..|+.+++.+.+++ +++++|.+|.+.. +.. ...|+|+..+.+ +++. +.++|.|
T Consensus 126 ~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~--~~~------~i~g~pVlg~~~~l~~~i~----~~~id~V 192 (445)
T TIGR03025 126 RRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPS--DRV------EVAGLPVLGKLDDLVELVR----AHRVDEV 192 (445)
T ss_pred CcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcc--ccc------ccCCCcccCCHHHHHHHHH----hCCCCEE
Confidence 57999997 999999999998765 5899999985421 111 234677775544 4444 3578877
Q ss_pred EEcCC---chhHHHHHHHHHHcCCCEEEe
Q 022250 111 IDFTD---ASTVYDNVKQATAFGMRSVVY 136 (300)
Q Consensus 111 IDfT~---p~~~~~~~~~al~~G~~vVig 136 (300)
+-..+ ++...+.+..|.++|+++.+-
T Consensus 193 iIa~p~~~~~~~~~ll~~~~~~gv~V~~v 221 (445)
T TIGR03025 193 IIALPLSEEARILELLLQLRDLGVDVRLV 221 (445)
T ss_pred EEecCcccHHHHHHHHHHHHhcCCEEEEe
Confidence 64432 223356788888999987764
No 222
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=95.35 E-value=0.16 Score=52.95 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=34.7
Q ss_pred ceeeEeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250 22 KRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (300)
Q Consensus 22 ~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (300)
++---||.-+ ++||.|.|++|-+|+.+++.+.+..+++++++.
T Consensus 305 ~~~~~~~~~~---~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~ 347 (660)
T PRK08125 305 NSKPACSAKR---RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD 347 (660)
T ss_pred cccchhhhhc---CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence 4445566666 479999999999999999999866678999864
No 223
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.29 E-value=0.12 Score=45.81 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=61.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
..||.|+|+ |.+|..+++.+. ..++.=+-++|.+... .+... ++--....|-+-...+.+.+. .-+||+-|+
T Consensus 21 ~s~VlIiG~-gglG~evak~La-~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~----~lNp~v~i~ 94 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLV-LSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLR----ALNPRVKVS 94 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHH----HHCCCCEEE
Confidence 368999998 889999999987 4677767778854211 11110 000000011111111122222 235666555
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 164 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N 164 (300)
+-..... +.... .-.+..+|+-++. +.+....+.++|++.++|++.+..
T Consensus 95 ~~~~~~~-~~~~~-~~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~ 143 (197)
T cd01492 95 VDTDDIS-EKPEE-FFSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGV 143 (197)
T ss_pred EEecCcc-ccHHH-HHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4321111 11111 1235567766543 344556677777777777766543
No 224
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.28 E-value=0.19 Score=46.01 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=26.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
..||+|+|+ |..|..+++.+.. .++.=..++|.
T Consensus 32 ~~~VliiG~-GglGs~va~~La~-~Gvg~i~lvD~ 64 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAA-AGVGTLTLVDF 64 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence 468999998 9999999999875 46655556774
No 225
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.28 E-value=0.17 Score=46.75 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=54.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCc---CCCC--cceecCHHHHHhcccccCCcc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME---QPLE--IPVMSDLTMVLGSISQSKARA 108 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~---~~~g--v~v~~dl~~~l~~~~~~~~~D 108 (300)
|||+|+|+ |.||..++..+.+ .+.++.. ++++. .....+. |.. .... +...++.+++ .++|
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~-~g~~V~~-~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~d 68 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQ-AGHDVTL-VARRG--AHLDALNENGLRLEDGEITVPVLAADDPAEL-------GPQD 68 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCh--HHHHHHHHcCCcccCCceeecccCCCChhHc-------CCCC
Confidence 58999998 9999999998875 4667654 44321 1111110 110 0000 1123455443 3789
Q ss_pred EEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCH
Q 022250 109 VVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL 142 (300)
Q Consensus 109 VVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~ 142 (300)
+||-++.+..+.+.+..... .+..+|+-..|+..
T Consensus 69 ~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~ 105 (304)
T PRK06522 69 LVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGH 105 (304)
T ss_pred EEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence 99988876666665554433 34556665568763
No 226
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.27 E-value=0.093 Score=48.14 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=76.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCcCCC-------------CcceecCHHH
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL-------------EIPVMSDLTM 96 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~-------------gv~v~~dl~~ 96 (300)
-.+|+|-|. |++|+..++.+.+ .+..++++.|. ++.|.|..++....... +...+++-++
T Consensus 32 g~~v~IqGf-G~VG~~~a~~l~~-~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 109 (244)
T PF00208_consen 32 GKRVAIQGF-GNVGSHAARFLAE-LGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDE 109 (244)
T ss_dssp TCEEEEEES-SHHHHHHHHHHHH-TTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCH
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-cCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccc
Confidence 378999998 9999999999886 49999999774 23355555443211011 1122222226
Q ss_pred HHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250 97 VLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI 167 (300)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~Si 167 (300)
++. .++||+|=+..+... .+++...+++|..+|+|-- .++++..+ .-+++ .+++.|.|..
T Consensus 110 il~-----~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~----~L~~r--GI~viPD~~a 172 (244)
T PF00208_consen 110 ILS-----VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE----ILRER--GILVIPDFLA 172 (244)
T ss_dssp GGT-----SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH----HHHHT--T-EEE-HHHH
T ss_pred ccc-----ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH----HHHHC--CCEEEcchhh
Confidence 775 689999988866665 6677768899999999976 35665433 23444 4577777643
No 227
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.25 E-value=0.34 Score=47.66 Aligned_cols=140 Identities=20% Similarity=0.187 Sum_probs=73.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCcCCCCccee--cCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVM--SDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVID 112 (300)
.+|.|+|+ |++|..+++.+.+ .+.++++ +|.... ....+.. .+ .+.++.+. +..++.+ ..+|+||-
T Consensus 6 k~v~iiG~-g~~G~~~A~~l~~-~G~~V~~-~d~~~~-~~~~~~~~~l-~~~~~~~~~~~~~~~~~------~~~d~vv~ 74 (450)
T PRK14106 6 KKVLVVGA-GVSGLALAKFLKK-LGAKVIL-TDEKEE-DQLKEALEEL-GELGIELVLGEYPEEFL------EGVDLVVV 74 (450)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCch-HHHHHHHHHH-HhcCCEEEeCCcchhHh------hcCCEEEE
Confidence 68999998 8899999998874 6888764 565320 1111100 00 12344332 2233333 46899997
Q ss_pred cCCchhHHHHHHHHHHcCCCE--------------EEeCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHH
Q 022250 113 FTDASTVYDNVKQATAFGMRS--------------VVYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~v--------------VigTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a 176 (300)
.+......+.+..|.+.|+++ |||-||-+-. -...|..+-+..+-++.+..| +|+.+.....
T Consensus 75 ~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~--ig~~~~~~~~ 152 (450)
T PRK14106 75 SPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGN--IGYPLIDAVE 152 (450)
T ss_pred CCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCc--ccHHHHHHHh
Confidence 665444455566666666654 4455543211 122344444444445566666 6665543221
Q ss_pred HHhccCCCCeEEEEc
Q 022250 177 ISASFHYKNVEIVES 191 (300)
Q Consensus 177 ~~~~~~~~dieIiE~ 191 (300)
. . ...|+-++|.
T Consensus 153 ~-~--~~~~~~v~E~ 164 (450)
T PRK14106 153 E-Y--GEDDIIVAEV 164 (450)
T ss_pred c-C--CCCCEEEEEc
Confidence 1 1 1235556665
No 228
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=95.23 E-value=0.11 Score=47.53 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=59.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchhh-----hhcCcCCCCccee---
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIGM-----VCDMEQPLEIPVM--- 91 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d~~~-----~~g~~~~~gv~v~--- 91 (300)
-+|.|+|. |.+|+-.++++.. .++.=.-++|.+ ..|+.--+ ...+.+...+...
T Consensus 31 ~~V~VvGi-GGVGSw~veALaR-sGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 31 AHVCVVGI-GGVGSWAVEALAR-SGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred CcEEEEec-CchhHHHHHHHHH-cCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 46999998 9999999999885 455444455521 11211000 1111122222221
Q ss_pred ---cCHHHHHhcccccCCccEEEEcCC-chhHHHHHHHHHHcCCCEEEe
Q 022250 92 ---SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY 136 (300)
Q Consensus 92 ---~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVig 136 (300)
+++++++. .++|.|||+.. -.+-.+.+.+|.++++|+|..
T Consensus 109 ~t~en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss 152 (263)
T COG1179 109 ITEENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVISS 152 (263)
T ss_pred hCHhHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEee
Confidence 46777875 58999999884 455577889999999999854
No 229
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.23 E-value=0.017 Score=50.31 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=23.5
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
||+|+|+ |.||+.++..++.. ++++. .+|.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~-G~~V~-l~d~ 30 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARA-GYEVT-LYDR 30 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHT-TSEEE-EE-S
T ss_pred CEEEEcC-CHHHHHHHHHHHhC-CCcEE-EEEC
Confidence 7999998 99999999988754 88866 4664
No 230
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=95.22 E-value=0.094 Score=52.27 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=29.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhc----CCcEEEEEEe
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAID 68 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd 68 (300)
+.||+|+|+ ||+||.+.+.+.+. ++++|+++.+
T Consensus 127 ~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~ 163 (477)
T PRK08289 127 PRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVV 163 (477)
T ss_pred CceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEec
Confidence 589999998 99999999998766 5899999975
No 231
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.21 E-value=0.041 Score=46.05 Aligned_cols=125 Identities=16% Similarity=0.139 Sum_probs=65.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCC---CC--cchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (300)
|||+|+|++|.+|+.++-.+...+- -|| ..+|.+. .| .|....... ....+.+..+..+.+ .++|+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei-~L~D~~~~~~~g~a~Dl~~~~~~-~~~~~~i~~~~~~~~------~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEI-VLIDINEDKAEGEALDLSHASAP-LPSPVRITSGDYEAL------KDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEE-EEEESSHHHHHHHHHHHHHHHHG-STEEEEEEESSGGGG------TTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCce-EEeccCcccceeeehhhhhhhhh-ccccccccccccccc------ccccE
Confidence 6999999999999999998876643 344 4677541 11 122221110 112233433334444 47899
Q ss_pred EEEcCC-chh-HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022250 110 VIDFTD-AST-VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF 181 (300)
Q Consensus 110 VIDfT~-p~~-~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~ 181 (300)
||-... |.. -.+. ...++.+.+++ .+-.++|.+.+-+ .-+++.+|= ++++..++++.++
T Consensus 73 vvitag~~~~~g~sR-~~ll~~N~~i~-------~~~~~~i~~~~p~--~~vivvtNP---vd~~t~~~~~~s~ 133 (141)
T PF00056_consen 73 VVITAGVPRKPGMSR-LDLLEANAKIV-------KEIAKKIAKYAPD--AIVIVVTNP---VDVMTYVAQKYSG 133 (141)
T ss_dssp EEETTSTSSSTTSSH-HHHHHHHHHHH-------HHHHHHHHHHSTT--SEEEE-SSS---HHHHHHHHHHHHT
T ss_pred EEEeccccccccccH-HHHHHHhHhHH-------HHHHHHHHHhCCc--cEEEEeCCc---HHHHHHHHHHhhC
Confidence 885431 111 0011 11122222222 2344556666643 456666665 7787777777664
No 232
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.19 E-value=0.14 Score=46.54 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=57.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhc-CcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
..||+|+|+ |.+|..+++.+.. .++.=.-++|.+... .+...... .....|-+-.+-+.+-+. +-+|++-|+
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar-~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~----~inP~~~V~ 84 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALAR-SGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIR----DINPECEVD 84 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHH-cCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHH----HHCCCcEEE
Confidence 468999998 9999999999875 455333456642110 01110000 000111111111112221 124454443
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEc
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 162 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a 162 (300)
.-.-....++....+..+.++|+.++.-.. ....|.++|.++++|++.+
T Consensus 85 ~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~-~k~~L~~~c~~~~ip~I~s 133 (231)
T cd00755 85 AVEEFLTPDNSEDLLGGDPDFVVDAIDSIR-AKVALIAYCRKRKIPVISS 133 (231)
T ss_pred EeeeecCHhHHHHHhcCCCCEEEEcCCCHH-HHHHHHHHHHHhCCCEEEE
Confidence 322211223344444445677776654322 2345666777777776653
No 233
>PLN02427 UDP-apiose/xylose synthase
Probab=95.19 E-value=0.14 Score=49.29 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=28.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (300)
+|||.|.|++|-+|+.+++.+.+..+.+++++.
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 479999999999999999999876568887753
No 234
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.14 E-value=0.11 Score=51.03 Aligned_cols=128 Identities=16% Similarity=0.263 Sum_probs=68.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVI 111 (300)
|||.|+|+ |++|+.+++.+.+ .+.+++ ++|.+. .....+. ...++++. .+.+.+.+. .-.++|+||
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~-~g~~v~-vid~~~--~~~~~~~---~~~~~~~~~gd~~~~~~l~~~--~~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSG-ENNDVT-VIDTDE--ERLRRLQ---DRLDVRTVVGNGSSPDVLREA--GAEDADLLI 70 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCcEE-EEECCH--HHHHHHH---hhcCEEEEEeCCCCHHHHHHc--CCCcCCEEE
Confidence 58999998 9999999998874 578877 566532 1122211 11233322 122222110 014689888
Q ss_pred EcCCchhHH-HHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHHh--hhCCCeEEEcCCCcHHHHHHHHH
Q 022250 112 DFTDASTVY-DNVKQATAF-GMRSVVYVPHIQLETVSALSAFC--DKASMGCLIAPTLSIGSILLQQA 175 (300)
Q Consensus 112 DfT~p~~~~-~~~~~al~~-G~~vVigTTG~~~e~~~~L~~~a--~~~~i~iv~a~N~SiGv~ll~~~ 175 (300)
-++..+... ..+..+.+. +.+-++..+.-.+ . .+..++. ++.|+..+++|..-.+-.+...+
T Consensus 71 ~~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~~~-~-~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l 136 (453)
T PRK09496 71 AVTDSDETNMVACQIAKSLFGAPTTIARVRNPE-Y-AEYDKLFSKEALGIDLLISPELLVAREIARLI 136 (453)
T ss_pred EecCChHHHHHHHHHHHHhcCCCeEEEEECCcc-c-cchhhhhhhhcCCccEEECHHHHHHHHHHHHh
Confidence 666544433 333455554 5554444332111 1 1223332 55677888888877776555443
No 235
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=95.13 E-value=0.11 Score=47.43 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=39.7
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
||.|+|++|.+|+.+++.+.+ .+.+++++. +.. -| +.-.++++++++ ..++|+||++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-~g~~v~~~~-r~~--~d------------~~~~~~~~~~~~----~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-EGRVVVALT-SSQ--LD------------LTDPEALERLLR----AIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-cCCEEEEeC-Ccc--cC------------CCCHHHHHHHHH----hCCCCEEEECCc
Confidence 689999999999999999885 578877643 221 01 111234556664 246799998764
No 236
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.13 E-value=0.25 Score=48.26 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=23.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
|||+|+|. |.||..++..++ . ++++++ +|.
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA-~-G~~Vig-vD~ 30 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIA-Q-NHEVVA-LDI 30 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHH-h-CCcEEE-EEC
Confidence 48999997 999999997665 3 788765 664
No 237
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.13 E-value=0.11 Score=48.23 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=50.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
|||.|.|++|-+|+.+++.+.+. + ++++ +++.. . .+ ...+.-.+.++++++ ..++|+||.+..
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~-~~~~~--~---~~-----~~Dl~d~~~~~~~~~----~~~~D~Vih~Aa 63 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL-G-NLIA-LDVHS--T---DY-----CGDFSNPEGVAETVR----KIRPDVIVNAAA 63 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhcc-C-CEEE-ecccc--c---cc-----cCCCCCHHHHHHHHH----hcCCCEEEECCc
Confidence 48999999999999999988754 4 5544 44321 0 00 011111223445554 136899998742
Q ss_pred ----------chh--------HHHHHHHHHHcCCCEEEeCC
Q 022250 116 ----------AST--------VYDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 116 ----------p~~--------~~~~~~~al~~G~~vVigTT 138 (300)
|+. ....++.|.++|+++|.-+|
T Consensus 64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss 104 (299)
T PRK09987 64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST 104 (299)
T ss_pred cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 111 23455667777887775443
No 238
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.13 E-value=0.11 Score=49.78 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=44.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-.+|+|+|. |+||+.+++.+.. -++++. ++|+.. ..... ...++. +.++++++. .+|+|+-..
T Consensus 150 gktvgIiG~-G~IG~~vA~~l~~-~G~~V~-~~d~~~--~~~~~-----~~~~~~-~~~l~ell~------~aDiV~l~l 212 (333)
T PRK13243 150 GKTIGIIGF-GRIGQAVARRAKG-FGMRIL-YYSRTR--KPEAE-----KELGAE-YRPLEELLR------ESDFVSLHV 212 (333)
T ss_pred CCEEEEECc-CHHHHHHHHHHHH-CCCEEE-EECCCC--ChhhH-----HHcCCE-ecCHHHHHh------hCCEEEEeC
Confidence 378999998 9999999998874 578876 567642 11110 122333 468999984 789998665
Q ss_pred C
Q 022250 115 D 115 (300)
Q Consensus 115 ~ 115 (300)
+
T Consensus 213 P 213 (333)
T PRK13243 213 P 213 (333)
T ss_pred C
Confidence 4
No 239
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.12 E-value=0.11 Score=46.47 Aligned_cols=98 Identities=24% Similarity=0.297 Sum_probs=64.3
Q ss_pred CCcceEEEEcCCchHHHHHHHHHHhc-CCcEEEEE--EecCCCCcchhhhhcCcCCCCccee-cCHHHHHhcccccCCcc
Q 022250 33 QSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA--IDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARA 108 (300)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~--vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~D 108 (300)
.++.||+|+|. |++|.-+.--++.+ ..+|.-+. +|+..-|.. .. .++|++.+ .-++-+|.. -...+.|
T Consensus 2 ~sk~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdgla--ra----arlgv~tt~egv~~ll~~-p~~~di~ 73 (310)
T COG4569 2 SSKRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLA--RA----ARLGVATTHEGVIGLLNM-PEFADID 73 (310)
T ss_pred CCcceEEEEcc-CcccHHHHHHHHhcCCcccceeEEccCCCccHHH--HH----HhcCCcchhhHHHHHHhC-CCCCCcc
Confidence 35789999995 99999865545544 44554443 454332211 11 24555544 345555541 0112345
Q ss_pred EEEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 109 VVIDfT~p~~~~~~~~~al~~G~~vVigTT 138 (300)
.|.|.|+.-++.+++....+.|++.+-=||
T Consensus 74 lvfdatsa~~h~~~a~~~ae~gi~~idltp 103 (310)
T COG4569 74 LVFDATSAGAHVKNAAALAEAGIRLIDLTP 103 (310)
T ss_pred eEEeccccchhhcchHhHHhcCCceeecch
Confidence 999999999999999999999999998776
No 240
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=95.08 E-value=0.29 Score=48.50 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=56.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceec--CHHHHHhcccccCCccEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVV 110 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVV 110 (300)
+-|+.|+|+ |..|+.+++.+.+++ +++++|.+|.+.. ..+. .-.|+|+.. ++.+.+. +.++|.|
T Consensus 125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~--~~~~-----~i~g~pVlg~~~l~~~i~----~~~id~V 192 (456)
T TIGR03022 125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPA--ASGR-----LLTGLPVVGADDALRLYA----RTRYAYV 192 (456)
T ss_pred CceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCcc--cccc-----ccCCCcccChhHHHHHHH----hCCCCEE
Confidence 357999997 999999999987654 5899999985421 1111 123556654 3444443 2567865
Q ss_pred EEcCC---chhHHHHHHHHHHcCC-CEEE
Q 022250 111 IDFTD---ASTVYDNVKQATAFGM-RSVV 135 (300)
Q Consensus 111 IDfT~---p~~~~~~~~~al~~G~-~vVi 135 (300)
+-..+ ++...+.+..|.+.++ ++.+
T Consensus 193 iIAip~~~~~~~~~ll~~l~~~~v~~V~~ 221 (456)
T TIGR03022 193 IVAMPGTQAEDMARLVRKLGALHFRNVLI 221 (456)
T ss_pred EEecCCccHHHHHHHHHHHHhCCCeEEEE
Confidence 53332 3445667778888888 5544
No 241
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=95.01 E-value=0.14 Score=47.17 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=76.0
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-------cCHHHHHhcccccCC
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-------SDLTMVLGSISQSKA 106 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-------~dl~~~l~~~~~~~~ 106 (300)
||++|.|.|.| .=|+.+++.+.+. +..++.-+.... |. . ...++++. +++.+.+. +.+
T Consensus 1 ~~~~IlvlgGT-~egr~la~~L~~~-g~~v~~Svat~~-g~-~-------~~~~~~v~~G~l~~~~~l~~~l~----~~~ 65 (248)
T PRK08057 1 MMPRILLLGGT-SEARALARALAAA-GVDIVLSLAGRT-GG-P-------ADLPGPVRVGGFGGAEGLAAYLR----EEG 65 (248)
T ss_pred CCceEEEEech-HHHHHHHHHHHhC-CCeEEEEEccCC-CC-c-------ccCCceEEECCCCCHHHHHHHHH----HCC
Confidence 57889999986 5599999988754 666655443321 21 1 11222221 34555665 478
Q ss_pred ccEEEEcCCchhH---HHHHHHHHHcCCCEE-EeCCCCCH---------HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHH
Q 022250 107 RAVVIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQL---------ETVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (300)
Q Consensus 107 ~DVVIDfT~p~~~---~~~~~~al~~G~~vV-igTTG~~~---------e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~ 173 (300)
+++|||.|||=+. ......|.+.|+|.+ ..=+.|.. +..+++.+++.+. -.+++ .+|++-+.
T Consensus 66 i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~~-~~vll----ttGsk~l~ 140 (248)
T PRK08057 66 IDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAPF-RRVLL----TTGRQPLA 140 (248)
T ss_pred CCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhcc-CCEEE----ecCcchHH
Confidence 9999999998665 455678889999998 44333311 1233344444333 24565 78888776
Q ss_pred HHHH
Q 022250 174 QAAI 177 (300)
Q Consensus 174 ~~a~ 177 (300)
.+..
T Consensus 141 ~f~~ 144 (248)
T PRK08057 141 HFAA 144 (248)
T ss_pred HHhh
Confidence 6654
No 242
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.01 E-value=0.3 Score=45.72 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=58.6
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEE-EEEEecCCCCcchhhhhcCcCCCCcce--ecCH-HHHHhcccccCCccE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDL-TMVLGSISQSKARAV 109 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eL-vg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl-~~~l~~~~~~~~~DV 109 (300)
++++|+|+|. |.||+.+++.+.+ .+... +-..|......... ...|+.- ..+. .+.+ ..+|+
T Consensus 2 ~~~~v~IvG~-GliG~s~a~~l~~-~g~~v~i~g~d~~~~~~~~a------~~lgv~d~~~~~~~~~~~------~~aD~ 67 (279)
T COG0287 2 ASMKVGIVGL-GLMGGSLARALKE-AGLVVRIIGRDRSAATLKAA------LELGVIDELTVAGLAEAA------AEADL 67 (279)
T ss_pred CCcEEEEECC-chHHHHHHHHHHH-cCCeEEEEeecCcHHHHHHH------hhcCcccccccchhhhhc------ccCCE
Confidence 4689999997 9999999999875 45543 22333321000111 1123221 1222 2222 46899
Q ss_pred EEEcCCchhHHHHHHHHHH-cCCC-EEEeCCCCCHHHHHHHHHHh
Q 022250 110 VIDFTDASTVYDNVKQATA-FGMR-SVVYVPHIQLETVSALSAFC 152 (300)
Q Consensus 110 VIDfT~p~~~~~~~~~al~-~G~~-vVigTTG~~~e~~~~L~~~a 152 (300)
||-.++..++.+.++.... .... +|+.+|..-..-.+.+.+..
T Consensus 68 VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 68 VIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred EEEeccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 9988888888888877663 3333 44444444333344444444
No 243
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.00 E-value=0.18 Score=44.80 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=26.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
..||+|+|+ |.||+.+++.+.. .++.=+-++|.+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~-~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLAR-AGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEECCC
Confidence 468999999 9999999999875 566434467753
No 244
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=94.98 E-value=0.14 Score=47.43 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=27.3
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
|.|.|++|-+|+.+++.+.+ .+.+++.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~-~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALND-KGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHh-CCCceEEEecCC
Confidence 78999999999999999886 477788888754
No 245
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=94.94 E-value=0.23 Score=48.50 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=61.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhhh----hcCc---------C-----CCCcceec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGMV----CDME---------Q-----PLEIPVMS 92 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g---~d~~~~----~g~~---------~-----~~gv~v~~ 92 (300)
|.||+|.|+||-+|+..++.+.+.|+ +++++........ +.+.++ +.+. . ..++.++.
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~ 80 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV 80 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence 36899999999999999999887765 9999987632110 000000 0000 0 00133432
Q ss_pred ---CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250 93 ---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (300)
Q Consensus 93 ---dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (300)
.+.++.+ ..++|+|+-...--+-..-...|+++|+.+-...
T Consensus 81 G~~~l~~l~~----~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLAN 124 (389)
T TIGR00243 81 GEEGICEMAA----LEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALAN 124 (389)
T ss_pred CHHHHHHHHc----CCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEec
Confidence 2333332 3467888877766666777778889988877653
No 246
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.94 E-value=0.15 Score=48.73 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=26.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
-||+|+|+ |-||+.++..++. .+++++ ++|..
T Consensus 8 ~~VaVIGa-G~MG~giA~~~a~-aG~~V~-l~D~~ 39 (321)
T PRK07066 8 KTFAAIGS-GVIGSGWVARALA-HGLDVV-AWDPA 39 (321)
T ss_pred CEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCC
Confidence 57999998 9999999998874 688877 47753
No 247
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=94.90 E-value=0.13 Score=42.68 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=28.7
Q ss_pred EEEEcCCchHHHHHHHHHHhcC-CcEEEEEEec
Q 022250 38 VIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS 69 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~ 69 (300)
|+|.|+||-+|+...+.+.+.| .+++++....
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~ 33 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG 33 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC
Confidence 6899999999999999999888 5999998774
No 248
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.90 E-value=0.04 Score=52.21 Aligned_cols=88 Identities=10% Similarity=0.074 Sum_probs=54.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
.+|+|+|+ |.||+.+++.+....+.+=+-+++++. ..+..++..-...+ +.+.+++++++. ++|+||-.
T Consensus 126 ~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~--~~a~~~a~~~~~~g~~~~~~~~~~~av~------~aDIVi~a 196 (314)
T PRK06141 126 SRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDP--AKAEALAAELRAQGFDAEVVTDLEAAVR------QADIISCA 196 (314)
T ss_pred ceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHHhcCCceEEeCCHHHHHh------cCCEEEEe
Confidence 68999997 999999998776644555555677643 22233331101113 556788888884 79999876
Q ss_pred CCchhHHHHH-HHHHHcCCCEE
Q 022250 114 TDASTVYDNV-KQATAFGMRSV 134 (300)
Q Consensus 114 T~p~~~~~~~-~~al~~G~~vV 134 (300)
|+.. ...+ ...++.|.++.
T Consensus 197 T~s~--~pvl~~~~l~~g~~i~ 216 (314)
T PRK06141 197 TLST--EPLVRGEWLKPGTHLD 216 (314)
T ss_pred eCCC--CCEecHHHcCCCCEEE
Confidence 6433 1211 24567787554
No 249
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.89 E-value=0.11 Score=48.23 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=64.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC-cceecCHHHHHhcccccCCccEEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
..+|.|+|+ |++|+.++..+... ++.=+-+++++. +.+..++..-.... +.+..+..+.+ .++|+||..
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~~-g~~~V~v~~R~~--~~a~~l~~~~~~~~~~~~~~~~~~~~------~~~DivIna 192 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLDL-GVAEITIVNRTV--ERAEELAKLFGALGKAELDLELQEEL------ADFDLIINA 192 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHc-CCCEEEEEeCCH--HHHHHHHHHhhhccceeecccchhcc------ccCCEEEEC
Confidence 358999997 99999999998854 533344566542 22222221000111 22211333444 478999988
Q ss_pred CCchhHH-----HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250 114 TDASTVY-----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179 (300)
Q Consensus 114 T~p~~~~-----~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~ 179 (300)
|+..... +....++..+ .+|+-. -+++.. -.|.+.|++.|.+++- .+++ |+.|++.++
T Consensus 193 Tp~g~~~~~~~~~~~~~~l~~~-~~v~Di-vY~P~~-T~ll~~A~~~G~~~~~----G~~M-l~~Qa~~~f 255 (278)
T PRK00258 193 TSAGMSGELPLPPLPLSLLRPG-TIVYDM-IYGPLP-TPFLAWAKAQGARTID----GLGM-LVHQAAEAF 255 (278)
T ss_pred CcCCCCCCCCCCCCCHHHcCCC-CEEEEe-ecCCCC-CHHHHHHHHCcCeecC----CHHH-HHHHHHHHH
Confidence 8533211 1112334443 333321 122211 2477778888887653 3332 345555554
No 250
>PRK07340 ornithine cyclodeaminase; Validated
Probab=94.86 E-value=0.053 Score=51.17 Aligned_cols=90 Identities=18% Similarity=0.136 Sum_probs=58.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
.+|+|+|+ |.||+.+++++....+.+-+.+++++. ..+..++..-...++.+ ++++++++. ++|+||-+|
T Consensus 126 ~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~--~~a~~~a~~~~~~~~~~~~~~~~~av~------~aDiVitaT 196 (304)
T PRK07340 126 GDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTA--ASAAAFCAHARALGPTAEPLDGEAIPE------AVDLVVTAT 196 (304)
T ss_pred CEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCCeeEECCHHHHhh------cCCEEEEcc
Confidence 68999997 999999999997656667778888753 22222221001123333 578888884 899999877
Q ss_pred C-chhHHHHHHHHHHcCCCEE-EeC
Q 022250 115 D-ASTVYDNVKQATAFGMRSV-VYV 137 (300)
Q Consensus 115 ~-p~~~~~~~~~al~~G~~vV-igT 137 (300)
+ ++.+.+ ..++-|.++. ||+
T Consensus 197 ~s~~Pl~~---~~~~~g~hi~~iGs 218 (304)
T PRK07340 197 TSRTPVYP---EAARAGRLVVAVGA 218 (304)
T ss_pred CCCCceeC---ccCCCCCEEEecCC
Confidence 5 333332 2367888777 554
No 251
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.84 E-value=0.14 Score=48.94 Aligned_cols=149 Identities=12% Similarity=0.125 Sum_probs=82.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
.+|+|+|. |.||+.+++.+. .-++++++..++. .... .+ ...|..+ .+++++++ .+|+|+-..+
T Consensus 17 KtVGIIG~-GsIG~amA~nL~-d~G~~ViV~~r~~---~s~~-~A---~~~G~~v-~sl~Eaak------~ADVV~llLP 80 (335)
T PRK13403 17 KTVAVIGY-GSQGHAQAQNLR-DSGVEVVVGVRPG---KSFE-VA---KADGFEV-MSVSEAVR------TAQVVQMLLP 80 (335)
T ss_pred CEEEEEeE-cHHHHHHHHHHH-HCcCEEEEEECcc---hhhH-HH---HHcCCEE-CCHHHHHh------cCCEEEEeCC
Confidence 67999998 999999999887 5689988655432 2111 11 1234443 38999984 7899886554
Q ss_pred chhHHHHHH-HHHHc-CC-CEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEcc
Q 022250 116 ASTVYDNVK-QATAF-GM-RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESR 192 (300)
Q Consensus 116 p~~~~~~~~-~al~~-G~-~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~H 192 (300)
-+.....+. ..+.+ .. .+++=.-||+- ....| ---.++-++..+-=+.|-.+=..+.+-.. -+.. +=.|
T Consensus 81 d~~t~~V~~~eil~~MK~GaiL~f~hgfni-~~~~i---~pp~~vdv~mvaPKgpG~~vR~~y~~G~G--vp~l--~av~ 152 (335)
T PRK13403 81 DEQQAHVYKAEVEENLREGQMLLFSHGFNI-HFGQI---NPPSYVDVAMVAPKSPGHLVRRVFQEGNG--VPAL--VAVH 152 (335)
T ss_pred ChHHHHHHHHHHHhcCCCCCEEEECCCcce-ecCce---eCCCCCeEEEECCCCCChHHHHHHHcCCC--ceeE--EEEE
Confidence 333333332 12222 11 23444457764 22222 11233566655555667544333332111 1211 2223
Q ss_pred CCCCCCCchHHHHHHHHHHh
Q 022250 193 PNARDFPSPDATQIANNLSN 212 (300)
Q Consensus 193 h~K~DaPSGTA~~l~~~i~~ 212 (300)
+ | +||.|..+|-+.+.
T Consensus 153 q---d-~sg~a~~~ala~a~ 168 (335)
T PRK13403 153 Q---D-ATGTALHVALAYAK 168 (335)
T ss_pred E---C-CCCcHHHHHHHHHH
Confidence 2 5 89999999988876
No 252
>PRK05865 hypothetical protein; Provisional
Probab=94.83 E-value=0.21 Score=53.57 Aligned_cols=110 Identities=14% Similarity=0.195 Sum_probs=60.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc-CCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
|||.|.|++|.+|+.+++.+.+ .+.+++++..... ..... +.. -...+.-.+++++++ .++|+||.+.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~-~G~~Vv~l~R~~~--~~~~~--~v~~v~gDL~D~~~l~~al------~~vD~VVHlA 69 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLS-QGHEVVGIARHRP--DSWPS--SADFIAADIRDATAVESAM------TGADVVAHCA 69 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEECCch--hhccc--CceEEEeeCCCHHHHHHHH------hCCCEEEECC
Confidence 4899999999999999998875 5788877543211 00000 000 000111112344555 3689999986
Q ss_pred Cc---------hhHHHHHHHHHHcCC-CEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250 115 DA---------STVYDNVKQATAFGM-RSVVYVPHIQLETVSALSAFCDKASMGCL 160 (300)
Q Consensus 115 ~p---------~~~~~~~~~al~~G~-~vVigTTG~~~e~~~~L~~~a~~~~i~iv 160 (300)
.. ......++.|.++|+ .+|.-++.. . ...++++++.+++++
T Consensus 70 a~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~-K---~aaE~ll~~~gl~~v 121 (854)
T PRK05865 70 WVRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH-Q---PRVEQMLADCGLEWV 121 (854)
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH-H---HHHHHHHHHcCCCEE
Confidence 32 223445667777776 444333322 2 233444555565443
No 253
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.80 E-value=0.18 Score=51.12 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=26.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
-||+|+|+ |.||+.++..+.. .+++++ ++|.+
T Consensus 8 ~~V~VIGa-G~MG~gIA~~la~-aG~~V~-l~D~~ 39 (507)
T PRK08268 8 ATVAVIGA-GAMGAGIAQVAAQ-AGHTVL-LYDAR 39 (507)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEeCC
Confidence 57999998 9999999998774 588876 57753
No 254
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.77 E-value=0.18 Score=47.65 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=41.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc-ceecCHHHHHhcccccCCccEEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
-.+|+|+|. |+||+.+++.+. .-++++++ +|+.. .+ .++ ..+.++++++. .+|+|+-.
T Consensus 122 gktvgIiG~-G~IG~~vA~~l~-afG~~V~~-~~r~~--~~----------~~~~~~~~~l~ell~------~aDiv~~~ 180 (303)
T PRK06436 122 NKSLGILGY-GGIGRRVALLAK-AFGMNIYA-YTRSY--VN----------DGISSIYMEPEDIMK------KSDFVLIS 180 (303)
T ss_pred CCEEEEECc-CHHHHHHHHHHH-HCCCEEEE-ECCCC--cc----------cCcccccCCHHHHHh------hCCEEEEC
Confidence 378999997 999999999765 45888875 56432 11 112 12568999984 78999855
Q ss_pred C
Q 022250 114 T 114 (300)
Q Consensus 114 T 114 (300)
.
T Consensus 181 l 181 (303)
T PRK06436 181 L 181 (303)
T ss_pred C
Confidence 4
No 255
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.72 E-value=0.095 Score=45.38 Aligned_cols=64 Identities=25% Similarity=0.236 Sum_probs=42.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-.+|+|+|+ |++|+.+++.+. .=++++++ +|+.. .+.... ...++ -+.++++++. .+|+|+-..
T Consensus 36 g~tvgIiG~-G~IG~~vA~~l~-~fG~~V~~-~d~~~--~~~~~~----~~~~~-~~~~l~ell~------~aDiv~~~~ 99 (178)
T PF02826_consen 36 GKTVGIIGY-GRIGRAVARRLK-AFGMRVIG-YDRSP--KPEEGA----DEFGV-EYVSLDELLA------QADIVSLHL 99 (178)
T ss_dssp TSEEEEEST-SHHHHHHHHHHH-HTT-EEEE-EESSC--HHHHHH----HHTTE-EESSHHHHHH------H-SEEEE-S
T ss_pred CCEEEEEEE-cCCcCeEeeeee-cCCceeEE-ecccC--Chhhhc----ccccc-eeeehhhhcc------hhhhhhhhh
Confidence 478999998 999999999887 45888775 66543 111101 12233 3579999995 689988554
No 256
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=94.70 E-value=0.063 Score=51.50 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=52.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
..+|+|+|. |.||+.+++.+.. .+..|.. .|++.. .++. ..+|...|+++.++.. ..+|||+-+|
T Consensus 52 tl~IaIIGf-GnmGqflAetli~-aGh~li~-hsRsdy-ssaa------~~yg~~~ft~lhdlce-----rhpDvvLlct 116 (480)
T KOG2380|consen 52 TLVIAIIGF-GNMGQFLAETLID-AGHGLIC-HSRSDY-SSAA------EKYGSAKFTLLHDLCE-----RHPDVVLLCT 116 (480)
T ss_pred ceEEEEEec-CcHHHHHHHHHHh-cCceeEe-cCcchh-HHHH------HHhcccccccHHHHHh-----cCCCEEEEEe
Confidence 489999998 9999999999874 5766654 343221 2222 3567777888888775 5899999888
Q ss_pred CchhHHHHHH
Q 022250 115 DASTVYDNVK 124 (300)
Q Consensus 115 ~p~~~~~~~~ 124 (300)
........+.
T Consensus 117 silsiekila 126 (480)
T KOG2380|consen 117 SILSIEKILA 126 (480)
T ss_pred hhhhHHHHHH
Confidence 6655555444
No 257
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=94.67 E-value=0.069 Score=50.84 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=58.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-cCCCCc--ceecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEI--PVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~gv--~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
.+++|+|+ |.+|+.+++.+....+++-+.+++++. ..+..++.. ...+++ ..++++++++. ++|+||-
T Consensus 130 ~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~--~~a~~~a~~~~~~~g~~v~~~~~~~~av~------~aDiVvt 200 (326)
T TIGR02992 130 SVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDS--AKAEALALQLSSLLGIDVTAATDPRAAMS------GADIIVT 200 (326)
T ss_pred cEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHhc------cCCEEEE
Confidence 58999998 999999999997667788788888753 222223210 012243 34688999884 7999997
Q ss_pred cCCchhHHHHH-HHHHHcCCCEE
Q 022250 113 FTDASTVYDNV-KQATAFGMRSV 134 (300)
Q Consensus 113 fT~p~~~~~~~-~~al~~G~~vV 134 (300)
+|+... ..+ ...++.|.++.
T Consensus 201 aT~s~~--p~i~~~~l~~g~~i~ 221 (326)
T TIGR02992 201 TTPSET--PILHAEWLEPGQHVT 221 (326)
T ss_pred ecCCCC--cEecHHHcCCCcEEE
Confidence 774322 222 24567787766
No 258
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=94.66 E-value=0.32 Score=46.49 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=63.9
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcc---hhhhhcCcCC-----CCcceecCHHHHHhcccccC
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---IGMVCDMEQP-----LEIPVMSDLTMVLGSISQSK 105 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---~~~~~g~~~~-----~gv~v~~dl~~~l~~~~~~~ 105 (300)
++++|.|.|++|-+|+.+++.+++ .|+++.|-+..+..-+. +..+-+.... ..+.-+++++++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~-rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------ 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLS-RGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------ 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHh-CCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence 468999999999999999999884 79999998875421011 1111111111 12333567888884
Q ss_pred CccEEEEcCCc-----------------hhHHHHHHHHHHcC--CCEEEe
Q 022250 106 ARAVVIDFTDA-----------------STVYDNVKQATAFG--MRSVVY 136 (300)
Q Consensus 106 ~~DVVIDfT~p-----------------~~~~~~~~~al~~G--~~vVig 136 (300)
.+|.|+....| ..+...++.|.+.. +++|.-
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~T 127 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYT 127 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEe
Confidence 79999876543 13456778888888 777754
No 259
>PRK14851 hypothetical protein; Provisional
Probab=94.65 E-value=0.12 Score=54.18 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=24.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
..||+|+|+ |.+|..+++.+.. .++.=.-++|
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar-~GVG~l~LvD 74 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVR-TGIGRFHIAD 74 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHH-hCCCeEEEEc
Confidence 478999998 9999999998875 3543333455
No 260
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.63 E-value=0.23 Score=48.00 Aligned_cols=98 Identities=19% Similarity=0.260 Sum_probs=59.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh---------hhhcCcCCCCccee--
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG---------MVCDMEQPLEIPVM-- 91 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g~-------d~~---------~~~g~~~~~gv~v~-- 91 (300)
..||.|+|+ |.+|..+++.+. ..++.=+.++|.+. .++ |++ .+.-+.+...+..+
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 478999999 999999999887 45666666777421 111 111 00011011122222
Q ss_pred ----cCHHHHHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-CC
Q 022250 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI 140 (300)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G~ 140 (300)
++..+++ .++|+|||++..-.. .-.-..|.++++|+|.|-. ||
T Consensus 106 ~i~~~~~~~~~------~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 106 RLTWSNALDEL------RDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred ecCHHHHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 1234455 479999999854333 4455789999999998753 54
No 261
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.63 E-value=0.26 Score=47.14 Aligned_cols=64 Identities=23% Similarity=0.217 Sum_probs=45.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-..|||+|+ |++|+.+++.++. =++++++ +|+.. .++.. ...++.-.++++++++ .+|+|+-.+
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~a-fgm~v~~-~d~~~-~~~~~------~~~~~~~~~~Ld~lL~------~sDiv~lh~ 205 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKA-FGMKVIG-YDPYS-PRERA------GVDGVVGVDSLDELLA------EADILTLHL 205 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHh-CCCeEEE-ECCCC-chhhh------ccccceecccHHHHHh------hCCEEEEcC
Confidence 368999998 9999999998774 5898886 66521 12211 1234444678999995 789988554
No 262
>PRK07877 hypothetical protein; Provisional
Probab=94.61 E-value=0.19 Score=52.95 Aligned_cols=94 Identities=17% Similarity=0.308 Sum_probs=57.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCc--EEEEEEecC-----CCCc------chh---------hhhcCcCCCCccee-
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSH-----SVGE------DIG---------MVCDMEQPLEIPVM- 91 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~-----~~g~------d~~---------~~~g~~~~~gv~v~- 91 (300)
..||+|+|+ | +|..++..+.. .++ +|. ++|.+ +..+ |++ .+..+.....|..+
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~Lar-aGvvG~l~-lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAA-EGLCGELR-LADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHH-ccCCCeEE-EEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 468999999 8 99999998874 353 333 44521 1111 111 01111122233332
Q ss_pred -----cCHHHHHhcccccCCccEEEEcCCc-hhHHHHHHHHHHcCCCEEEeCC
Q 022250 92 -----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 92 -----~dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigTT 138 (300)
+++++++ .++|+|||++.. ++-...-..|.++|+|+|.++.
T Consensus 183 ~~i~~~n~~~~l------~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 183 DGLTEDNVDAFL------DGLDVVVEECDSLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred ccCCHHHHHHHh------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 2566676 378999999854 4435555789999999999874
No 263
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.59 E-value=0.18 Score=50.01 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=56.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
--+|+|+|+ |.+|+.+++.+.. -+++++ ++|.+.. ...+ + ...|..+ .++++++ ..+|+||++|
T Consensus 212 Gk~VlViG~-G~IG~~vA~~lr~-~Ga~Vi-V~d~dp~--ra~~-A---~~~G~~v-~~l~eal------~~aDVVI~aT 275 (425)
T PRK05476 212 GKVVVVAGY-GDVGKGCAQRLRG-LGARVI-VTEVDPI--CALQ-A---AMDGFRV-MTMEEAA------ELGDIFVTAT 275 (425)
T ss_pred CCEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCCch--hhHH-H---HhcCCEe-cCHHHHH------hCCCEEEECC
Confidence 368999998 9999999998875 477744 4554321 1111 1 1123333 3577777 3789999988
Q ss_pred CchhHHH-HHHHHHHcCCCEEEeCCCCCH-HHHHHHHHHh
Q 022250 115 DASTVYD-NVKQATAFGMRSVVYVPHIQL-ETVSALSAFC 152 (300)
Q Consensus 115 ~p~~~~~-~~~~al~~G~~vVigTTG~~~-e~~~~L~~~a 152 (300)
......+ .....++.|.-++.. ..++. -+.+.|.+.+
T Consensus 276 G~~~vI~~~~~~~mK~GailiNv-G~~d~Eid~~~L~~~~ 314 (425)
T PRK05476 276 GNKDVITAEHMEAMKDGAILANI-GHFDNEIDVAALEELA 314 (425)
T ss_pred CCHHHHHHHHHhcCCCCCEEEEc-CCCCCccChHHHhhcC
Confidence 5443333 334444555433332 22222 2344555543
No 264
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.56 E-value=0.92 Score=44.74 Aligned_cols=135 Identities=15% Similarity=0.146 Sum_probs=72.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCccee-c--CHHHHHhcccccCCccEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-S--DLTMVLGSISQSKARAVV 110 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~--dl~~~l~~~~~~~~~DVV 110 (300)
+.||.|+|. |+.|...++.+....+ +++. +.|.... ....+.+ .. |+.++ . +. +.+ .++|+|
T Consensus 7 ~~~v~viG~-G~sG~s~~~~l~~~~~~~~v~-~~D~~~~-~~~~~~l---~~-g~~~~~g~~~~-~~~------~~~d~v 72 (438)
T PRK04663 7 IKNVVVVGL-GITGLSVVKHLRKYQPQLTVK-VIDTRET-PPGQEQL---PE-DVELHSGGWNL-EWL------LEADLV 72 (438)
T ss_pred CceEEEEec-cHHHHHHHHHHHhcCCCCeEE-EEeCCCC-chhHHHh---hc-CCEEEeCCCCh-HHh------ccCCEE
Confidence 357999998 9999999999887665 7766 4774321 1111111 12 66553 2 33 334 368977
Q ss_pred EEcCC-chhHHHHHHHHHHcCCCEE--------------EeCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcHHHHHHH
Q 022250 111 IDFTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (300)
Q Consensus 111 IDfT~-p~~~~~~~~~al~~G~~vV--------------igTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~ 173 (300)
|--+. |. ..+.+..|.++|+|++ |+-||-+-. -...|..+-++.+....+..|+ |+.++.
T Consensus 73 V~SpgI~~-~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni--G~~~~~ 149 (438)
T PRK04663 73 VTNPGIAL-ATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI--GVPALD 149 (438)
T ss_pred EECCCCCC-CCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc--CHHHHh
Confidence 74331 33 2344556666666654 444543211 1223444455556566677784 555432
Q ss_pred HHHHHhccCCCCeEEEEc
Q 022250 174 QAAISASFHYKNVEIVES 191 (300)
Q Consensus 174 ~~a~~~~~~~~dieIiE~ 191 (300)
. +.. ..|+-|+|.
T Consensus 150 ~----~~~-~~~~~V~E~ 162 (438)
T PRK04663 150 L----LEQ-DAELYVLEL 162 (438)
T ss_pred h----hcC-CCCEEEEEc
Confidence 1 111 235566665
No 265
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.55 E-value=0.2 Score=47.11 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=72.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
..||.|+|+ |.+|..+++.+. ..++.=+.++|.+..- .|.+. +.-.....|-+-.....+-+. +.+++|-|+
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~----eLNp~V~V~ 92 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLA----ELNPYVPVT 92 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHH----HHCCCCEEE
Confidence 468999998 999999999987 4677777788854310 11111 000000001111111112222 246787776
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ 170 (300)
........+.+ .+..+|+-|+. +.+....|.++|+++++|++++.-..+...
T Consensus 93 ~~~~~~~~~~l-----~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G~~G~ 144 (286)
T cd01491 93 VSTGPLTTDEL-----LKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRGLFGS 144 (286)
T ss_pred EEeccCCHHHH-----hcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccccEEE
Confidence 54333222322 24567777654 666777899999999999998776555433
No 266
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.54 E-value=0.47 Score=42.71 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=28.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
++||.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~-~g~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLA-KGFAVKAGVR 49 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHh-CCCEEEEEec
Confidence 57999999999999999999875 4788877654
No 267
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.54 E-value=0.29 Score=45.55 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=63.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhhh-cCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
..+|+|+|+ |.+|..+++.+.. .++.=+-++|.+.. -.+..... ......|-+-.+-+.+-+. +-+|++-|.
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar-~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~----~INP~~~V~ 103 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALAR-TGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIR----QINPECRVT 103 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHH-cCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHH----hHCCCcEEE
Confidence 468999998 9999999999875 45433446664311 01111100 0000111111111222222 135565443
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEc
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 162 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a 162 (300)
.-......++....+..+..+||-+.+-- .....|.++|+++++|++.+
T Consensus 104 ~i~~~i~~e~~~~ll~~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~ 152 (268)
T PRK15116 104 VVDDFITPDNVAEYMSAGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTT 152 (268)
T ss_pred EEecccChhhHHHHhcCCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 21111113344444556788998877632 33456888999999998864
No 268
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.53 E-value=0.18 Score=51.28 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=62.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecC--HHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVVID 112 (300)
..|+.|+|+ |.-|..+++.+...+.+..||++|.+. ...|. .-.|++++.. +.++++ +...+-++.
T Consensus 116 ~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~------~~~g~-~i~Gv~V~g~~~i~~~v~----~~~~~~iii 183 (588)
T COG1086 116 RIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDP------DLTGM-KIRGVPVLGRIEIERVVE----ELGIQLILI 183 (588)
T ss_pred CCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCCh------hhcCC-EEeceeeechhHHHHHHH----HcCCceEEE
Confidence 588999998 999999999999999999999999653 12222 2347788743 555555 356664443
Q ss_pred cC---CchhHHHHHHHHHHcCCCEEE
Q 022250 113 FT---DASTVYDNVKQATAFGMRSVV 135 (300)
Q Consensus 113 fT---~p~~~~~~~~~al~~G~~vVi 135 (300)
+- .++...+.++.|-+.|+.+=+
T Consensus 184 Aips~~~~~~~~i~~~l~~~~~~v~~ 209 (588)
T COG1086 184 AIPSASQEERRRILLRLARTGIAVRI 209 (588)
T ss_pred ecCCCCHHHHHHHHHHHHhcCCcEEe
Confidence 32 355567778888888865543
No 269
>PRK05086 malate dehydrogenase; Provisional
Probab=94.52 E-value=0.36 Score=45.74 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=40.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHh-cCCcEEEEEEecCCCCc-chhhhhcCcCCCCcce----ecCHHHHHhcccccCCccE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGE-DIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKARAV 109 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~-d~~~~~g~~~~~gv~v----~~dl~~~l~~~~~~~~~DV 109 (300)
|||+|+|++|++|+.++..+.. .+....+..+|.+.... .+-++.. .+....+ .+|+.+.+ .++|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~--~~~~~~i~~~~~~d~~~~l------~~~Di 72 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSH--IPTAVKIKGFSGEDPTPAL------EGADV 72 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhc--CCCCceEEEeCCCCHHHHc------CCCCE
Confidence 6999999999999999988754 33334445566432110 0011111 0111222 24655666 37999
Q ss_pred EEEcC
Q 022250 110 VIDFT 114 (300)
Q Consensus 110 VIDfT 114 (300)
||.+.
T Consensus 73 VIita 77 (312)
T PRK05086 73 VLISA 77 (312)
T ss_pred EEEcC
Confidence 99764
No 270
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.51 E-value=0.24 Score=47.26 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=26.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC------CcEEEEEEec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDS 69 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLvg~vd~ 69 (300)
++||+|+|++|.+|+.++..+...+ +.+|+. +|.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L-~D~ 41 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHL-LDI 41 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEE-EEc
Confidence 4899999999999999999887643 236765 564
No 271
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.45 E-value=0.89 Score=44.64 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=73.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVI 111 (300)
.+|.|+|+ |++|...++.+. ..+.++++ .|.... .....++ .+.|+.++ .+..++++ ..+|+||
T Consensus 6 k~v~v~G~-g~~G~s~a~~l~-~~G~~V~~-~d~~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~~-----~~~d~vV 73 (447)
T PRK02472 6 KKVLVLGL-AKSGYAAAKLLH-KLGANVTV-NDGKPFSENPEAQEL----LEEGIKVICGSHPLELLD-----EDFDLMV 73 (447)
T ss_pred CEEEEEee-CHHHHHHHHHHH-HCCCEEEE-EcCCCccchhHHHHH----HhcCCEEEeCCCCHHHhc-----CcCCEEE
Confidence 47999998 889999988776 56888766 464321 0111222 23455554 33444442 2489887
Q ss_pred EcCC-chhHHHHHHHHHHcCCCEE--------------EeCCCCCH--HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHH
Q 022250 112 DFTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (300)
Q Consensus 112 DfT~-p~~~~~~~~~al~~G~~vV--------------igTTG~~~--e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~ 174 (300)
--.. |. ....+..|.+.|+|++ |+-||-+- --...|..+-+..+.......| +|..+..
T Consensus 74 ~s~gi~~-~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gn--ig~p~~~- 149 (447)
T PRK02472 74 KNPGIPY-TNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGN--IGYPASE- 149 (447)
T ss_pred ECCCCCC-CCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcc--cChhhHH-
Confidence 5331 22 2355667777777765 44454321 1122344444555555566677 4544332
Q ss_pred HHHHhccCCCCeEEEEc
Q 022250 175 AAISASFHYKNVEIVES 191 (300)
Q Consensus 175 ~a~~~~~~~~dieIiE~ 191 (300)
+..... ..|+-|+|.
T Consensus 150 ~~~~~~--~~~~~V~E~ 164 (447)
T PRK02472 150 VAQKAT--ADDTLVMEL 164 (447)
T ss_pred HHhcCC--CCCEEEEEc
Confidence 111111 235666676
No 272
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.43 E-value=0.5 Score=36.79 Aligned_cols=83 Identities=22% Similarity=0.295 Sum_probs=50.6
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC-
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD- 115 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~- 115 (300)
+|+|+|+--++-..+-+.+.+ -+.++.-. .++. |.. . -...++..+ .++|+||-+|.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~-~G~~~~~h-g~~~-~~~-~------------~~~~l~~~i------~~aD~VIv~t~~ 58 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEK-YGGKLIHH-GRDG-GDE-K------------KASRLPSKI------KKADLVIVFTDY 58 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHH-cCCEEEEE-ecCC-CCc-c------------chhHHHHhc------CCCCEEEEEeCC
Confidence 589999433887777776664 67887765 2211 000 0 001244555 47899888774
Q ss_pred --chhHHHHHHHHHHcCCCEEEeC-CCCC
Q 022250 116 --ASTVYDNVKQATAFGMRSVVYV-PHIQ 141 (300)
Q Consensus 116 --p~~~~~~~~~al~~G~~vVigT-TG~~ 141 (300)
.+.....-..|.+.++|++... +|++
T Consensus 59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred cChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 4445556667777788888766 4665
No 273
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.42 E-value=1.1 Score=44.74 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=64.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec--CHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVID 112 (300)
+.||.|+|+ |+.|+.+++.+. ..+.++. +.|.+.. ...++. .+.|++++. +..+.+ .++|+||
T Consensus 15 ~~~v~v~G~-G~sG~a~a~~L~-~~G~~V~-~~D~~~~--~~~~~l---~~~gi~~~~~~~~~~~~------~~~d~vV- 79 (473)
T PRK00141 15 SGRVLVAGA-GVSGRGIAAMLS-ELGCDVV-VADDNET--ARHKLI---EVTGVADISTAEASDQL------DSFSLVV- 79 (473)
T ss_pred CCeEEEEcc-CHHHHHHHHHHH-HCCCEEE-EECCChH--HHHHHH---HhcCcEEEeCCCchhHh------cCCCEEE-
Confidence 468999997 999999999887 4567554 4775321 112221 235676652 223334 3688887
Q ss_pred cCC--chhHHHHHHHHHHcCCCE---------------------EEeCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcH
Q 022250 113 FTD--ASTVYDNVKQATAFGMRS---------------------VVYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSI 167 (300)
Q Consensus 113 fT~--p~~~~~~~~~al~~G~~v---------------------VigTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~Si 167 (300)
.|+ |..+ +.+..|.++|+++ +|+-||-+-. -...|..+-++.+.......|+..
T Consensus 80 ~Spgi~~~~-p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~ 158 (473)
T PRK00141 80 TSPGWRPDS-PLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNIGV 158 (473)
T ss_pred eCCCCCCCC-HHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccCCh
Confidence 453 3322 3445555666533 3455553211 122344444555555666777544
Q ss_pred H
Q 022250 168 G 168 (300)
Q Consensus 168 G 168 (300)
.
T Consensus 159 p 159 (473)
T PRK00141 159 P 159 (473)
T ss_pred h
Confidence 4
No 274
>PRK12320 hypothetical protein; Provisional
Probab=94.38 E-value=0.3 Score=51.34 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=51.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-e---c--CHHHHHhcccccCCccE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---S--DLTMVLGSISQSKARAV 109 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~--dl~~~l~~~~~~~~~DV 109 (300)
|||.|.|++|.+|+.+++.+.+ .+.+++++..... +.. ..++.+ . . .+.+++ .++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~-~G~~Vi~ldr~~~---~~~-------~~~ve~v~~Dl~d~~l~~al------~~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIA-AGHTVSGIAQHPH---DAL-------DPRVDYVCASLRNPVLQELA------GEADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEeCChh---hcc-------cCCceEEEccCCCHHHHHHh------cCCCE
Confidence 4899999999999999998875 5788887543221 000 001111 1 1 233444 36899
Q ss_pred EEEcCCch----------hHHHHHHHHHHcCCCEEEe
Q 022250 110 VIDFTDAS----------TVYDNVKQATAFGMRSVVY 136 (300)
Q Consensus 110 VIDfT~p~----------~~~~~~~~al~~G~~vVig 136 (300)
||.+..+. .....+..|.++|+.+|.-
T Consensus 64 VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~ 100 (699)
T PRK12320 64 VIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFV 100 (699)
T ss_pred EEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEE
Confidence 99987532 1334566777888877743
No 275
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.29 E-value=0.35 Score=43.40 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=49.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-cCHHHHHhcccccCCccEEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVIDf 113 (300)
||+++|.|. |+||+.+++.+.. .++|++-.-.+.+ +.....+ ...+..+. .+.+++. ...|||+-.
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~-ag~eV~igs~r~~--~~~~a~a---~~l~~~i~~~~~~dA~------~~aDVVvLA 67 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAK-AGHEVIIGSSRGP--KALAAAA---AALGPLITGGSNEDAA------ALADVVVLA 67 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHh-CCCeEEEecCCCh--hHHHHHH---HhhccccccCChHHHH------hcCCEEEEe
Confidence 688999996 9999999998874 5788764432221 1111011 11222221 3445554 368999955
Q ss_pred CCchhHHHHHHHHHH-c-CCCEEE
Q 022250 114 TDASTVYDNVKQATA-F-GMRSVV 135 (300)
Q Consensus 114 T~p~~~~~~~~~al~-~-G~~vVi 135 (300)
.+-+...+.+..... . ||=||-
T Consensus 68 VP~~a~~~v~~~l~~~~~~KIvID 91 (211)
T COG2085 68 VPFEAIPDVLAELRDALGGKIVID 91 (211)
T ss_pred ccHHHHHhHHHHHHHHhCCeEEEe
Confidence 555555665554443 3 344443
No 276
>PRK08291 ectoine utilization protein EutC; Validated
Probab=94.28 E-value=0.11 Score=49.61 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=56.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCCCCcc--eecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIP--VMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVID 112 (300)
.+|+|+|+ |.+|+.++..+....+++-+.+++++. ..+..++. +...++++ .++|+++++. ++|+||-
T Consensus 133 ~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~--~~a~~l~~~~~~~~g~~v~~~~d~~~al~------~aDiVi~ 203 (330)
T PRK08291 133 SRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDA--AKAEAYAADLRAELGIPVTVARDVHEAVA------GADIIVT 203 (330)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHhhccCceEEEeCCHHHHHc------cCCEEEE
Confidence 58999998 999999999887656777888888653 22222221 00123444 4789999884 7899987
Q ss_pred cCCchhHHHHHH-HHHHcCCCEE
Q 022250 113 FTDASTVYDNVK-QATAFGMRSV 134 (300)
Q Consensus 113 fT~p~~~~~~~~-~al~~G~~vV 134 (300)
.|+... ..+. ..++.|.++.
T Consensus 204 aT~s~~--p~i~~~~l~~g~~v~ 224 (330)
T PRK08291 204 TTPSEE--PILKAEWLHPGLHVT 224 (330)
T ss_pred eeCCCC--cEecHHHcCCCceEE
Confidence 764321 2222 2356777665
No 277
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.26 E-value=0.48 Score=44.61 Aligned_cols=96 Identities=9% Similarity=0.027 Sum_probs=51.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc-----CCC---CcceecCHHHHHhcccccCC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-----QPL---EIPVMSDLTMVLGSISQSKA 106 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-----~~~---gv~v~~dl~~~l~~~~~~~~ 106 (300)
+|||+|+|+ |.||..++..+.+ .+.++.-+. +.. .++-..-|+. ... .++++++.++ . ..
T Consensus 5 ~m~I~IiG~-GaiG~~lA~~L~~-~g~~V~~~~-r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~ 72 (313)
T PRK06249 5 TPRIGIIGT-GAIGGFYGAMLAR-AGFDVHFLL-RSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSAED-M------PP 72 (313)
T ss_pred CcEEEEECC-CHHHHHHHHHHHH-CCCeEEEEE-eCC--HHHHHhCCeEEEeCCCCeeecCceEEcchhh-c------CC
Confidence 579999998 9999999998875 456665433 221 1110000100 000 1233444443 2 46
Q ss_pred ccEEEEcCCchhHHHHH---HHHHHcCCCEEEeCCCCCH
Q 022250 107 RAVVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQL 142 (300)
Q Consensus 107 ~DVVIDfT~p~~~~~~~---~~al~~G~~vVigTTG~~~ 142 (300)
+|+||-++....+.+.+ ...+..+..+|.-.-|+..
T Consensus 73 ~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~ 111 (313)
T PRK06249 73 CDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGV 111 (313)
T ss_pred CCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCc
Confidence 89998776544444333 3333334445544448764
No 278
>PLN00106 malate dehydrogenase
Probab=94.25 E-value=0.23 Score=47.48 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=27.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
+.||+|+|++|++|+.++..+...+-..=+-.+|.+
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~ 53 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIA 53 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 469999998899999999988755444333456753
No 279
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=94.21 E-value=0.59 Score=46.92 Aligned_cols=92 Identities=20% Similarity=0.288 Sum_probs=56.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
.++.|+|+ |.-|+.+++.+.+++ +++++|.+|.+..+ . .-.|+|+..+.+++... .+....|++|-.
T Consensus 147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~---~------~i~gvPVlg~~d~l~~~-~~~~~v~vIIAi 215 (476)
T PRK15204 147 KKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASD---A------EINMLPVIKDTEIIWDL-NRTGDVHYILAY 215 (476)
T ss_pred CeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccc---c------ccCCCcccCCHHHHHHH-HHhCCCcEEEEe
Confidence 57999998 999999999987655 78999999864321 1 12467777655433110 012345665433
Q ss_pred CCc--hhHHHHHHHHHHcCCCEEEeCC
Q 022250 114 TDA--STVYDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 114 T~p--~~~~~~~~~al~~G~~vVigTT 138 (300)
... +...+.+..+.+.|+.-|.-.|
T Consensus 216 p~~~~~~r~~il~~l~~~gv~~V~vIP 242 (476)
T PRK15204 216 EYTELEKTHFWLRELSKHHCRSVTVVP 242 (476)
T ss_pred CcCcHHHHHHHHHHHhhcCCeEEEEeC
Confidence 322 2345677888888885333334
No 280
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=94.20 E-value=0.54 Score=43.25 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=73.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-------ecCHHHHHhcccccCCcc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA 108 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~D 108 (300)
|||.|.|.| .=|+.+++.+.+... -++.++. +. |.+.... ....+++ .+.+.+.+. +.++|
T Consensus 1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~t-~~-g~~~~~~----~~~~~~v~~G~lg~~~~l~~~l~----~~~i~ 68 (249)
T PF02571_consen 1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVAT-SY-GGELLKP----ELPGLEVRVGRLGDEEGLAEFLR----ENGID 68 (249)
T ss_pred CEEEEEech-HHHHHHHHHHHhcCC-EEEEEEh-hh-hHhhhcc----ccCCceEEECCCCCHHHHHHHHH----hCCCc
Confidence 689999986 558999998886544 2333322 11 1111100 0011111 234555554 47899
Q ss_pred EEEEcCCchhH---HHHHHHHHHcCCCEE-EeCCCCCH---------HHHHHHHHHhhhCC-CeEEEcCCCcHHHHHHHH
Q 022250 109 VVIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQL---------ETVSALSAFCDKAS-MGCLIAPTLSIGSILLQQ 174 (300)
Q Consensus 109 VVIDfT~p~~~---~~~~~~al~~G~~vV-igTTG~~~---------e~~~~L~~~a~~~~-i~iv~a~N~SiGv~ll~~ 174 (300)
+|||.|||-+. ......|.+.|+|.+ ..=+.|.. +..++..+++.+.+ -.+++ .+|++-+..
T Consensus 69 ~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~ifl----ttGsk~L~~ 144 (249)
T PF02571_consen 69 AVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFL----TTGSKNLPP 144 (249)
T ss_pred EEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEE----eCchhhHHH
Confidence 99999999664 455678889999998 44443321 12333444443322 45665 889988888
Q ss_pred HHH
Q 022250 175 AAI 177 (300)
Q Consensus 175 ~a~ 177 (300)
+..
T Consensus 145 f~~ 147 (249)
T PF02571_consen 145 FVP 147 (249)
T ss_pred Hhh
Confidence 865
No 281
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.19 E-value=0.29 Score=46.50 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=26.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
.+||+|+|+ |.||..++..+....-.+ +..+|.+
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~ 38 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVI 38 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECC
Confidence 469999998 999999999877543256 6678864
No 282
>PRK14852 hypothetical protein; Provisional
Probab=94.19 E-value=0.24 Score=53.61 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=24.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
..||+|+|+ |++|..+++.+.. .++-=+-++|
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAr-aGVG~I~L~D 363 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLAR-TGIGNFNLAD 363 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHH-cCCCeEEEEc
Confidence 468999999 9999999999875 4554444555
No 283
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=94.19 E-value=0.22 Score=51.68 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=24.6
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEV 63 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eL 63 (300)
++|||.|.|++|-+|+.+++.+.+ .+.++
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~-~g~~v 407 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEK-QGIAY 407 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHh-CCCeE
Confidence 468999999999999999998875 46666
No 284
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.16 E-value=2.1 Score=40.78 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=26.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH 70 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~ 70 (300)
+.||+|+|+ |.||..++..+.. .++ + +..+|.+
T Consensus 6 ~~KI~IIGa-G~vG~~ia~~la~-~gl~~-i~LvDi~ 39 (321)
T PTZ00082 6 RRKISLIGS-GNIGGVMAYLIVL-KNLGD-VVLFDIV 39 (321)
T ss_pred CCEEEEECC-CHHHHHHHHHHHh-CCCCe-EEEEeCC
Confidence 468999997 9999999987764 454 7 6678864
No 285
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.15 E-value=0.5 Score=46.58 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=49.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
--+|+|+|+ |.+|+.+++.+. .-+++++. +|.++. + ..+. ...|..+ .++++++. ..|++|++|
T Consensus 195 Gk~VvViG~-G~IG~~vA~~ak-~~Ga~ViV-~d~dp~-r-~~~A----~~~G~~v-~~leeal~------~aDVVItaT 258 (406)
T TIGR00936 195 GKTVVVAGY-GWCGKGIAMRAR-GMGARVIV-TEVDPI-R-ALEA----AMDGFRV-MTMEEAAK------IGDIFITAT 258 (406)
T ss_pred cCEEEEECC-CHHHHHHHHHHh-hCcCEEEE-EeCChh-h-HHHH----HhcCCEe-CCHHHHHh------cCCEEEECC
Confidence 468999998 999999999877 45788554 654321 1 1111 1123332 35567763 689999887
Q ss_pred CchhHHH-HHHHHHHcCCCEE
Q 022250 115 DASTVYD-NVKQATAFGMRSV 134 (300)
Q Consensus 115 ~p~~~~~-~~~~al~~G~~vV 134 (300)
....... .....++.|.-++
T Consensus 259 G~~~vI~~~~~~~mK~Gaili 279 (406)
T TIGR00936 259 GNKDVIRGEHFENMKDGAIVA 279 (406)
T ss_pred CCHHHHHHHHHhcCCCCcEEE
Confidence 5544433 2344445554333
No 286
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.07 E-value=0.27 Score=44.35 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=72.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVI 111 (300)
|+++|+|+ |++|..+++.+.+ .+.+++.+-+.+ ....++.. ...++.++ ++.+.+.+. --.++|++|
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~-~g~~Vv~Id~d~---~~~~~~~~--~~~~~~~v~gd~t~~~~L~~a--gi~~aD~vv 71 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSE-EGHNVVLIDRDE---ERVEEFLA--DELDTHVVIGDATDEDVLEEA--GIDDADAVV 71 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHh-CCCceEEEEcCH---HHHHHHhh--hhcceEEEEecCCCHHHHHhc--CCCcCCEEE
Confidence 68999998 9999999999874 567777654322 11122111 12333322 233333221 114689988
Q ss_pred EcCCchhHHH-HHHHHHH-cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH
Q 022250 112 DFTDASTVYD-NVKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (300)
Q Consensus 112 DfT~p~~~~~-~~~~al~-~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~ 175 (300)
-.|..+.... ....+++ .|+|-|+.+.-- ++..+.+ ++.|+-.+++|=...|..+...+
T Consensus 72 a~t~~d~~N~i~~~la~~~~gv~~viar~~~-~~~~~~~----~~~g~~~ii~Pe~~~~~~l~~~i 132 (225)
T COG0569 72 AATGNDEVNSVLALLALKEFGVPRVIARARN-PEHEKVL----EKLGADVIISPEKLAAKRLARLI 132 (225)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCCcEEEEecC-HHHHHHH----HHcCCcEEECHHHHHHHHHHHHh
Confidence 7776655433 3344444 799999886543 2222222 33346678888777776655443
No 287
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.07 E-value=0.15 Score=50.21 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=58.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
..||.|+|+ |.||+.+++.+.+ .++.-+-+++++. ..+.+++ .+++ +..++++.+.+ .++||||-
T Consensus 178 ~~~vlvIGA-Gem~~lva~~L~~-~g~~~i~IaNRT~--erA~~La---~~~~~~~~~l~el~~~l------~~~DvVis 244 (414)
T COG0373 178 DKKVLVIGA-GEMGELVAKHLAE-KGVKKITIANRTL--ERAEELA---KKLGAEAVALEELLEAL------AEADVVIS 244 (414)
T ss_pred cCeEEEEcc-cHHHHHHHHHHHh-CCCCEEEEEcCCH--HHHHHHH---HHhCCeeecHHHHHHhh------hhCCEEEE
Confidence 357999998 9999999999885 4666666777654 3344444 2344 22346666777 48999997
Q ss_pred cCC---chhHHHHHHHHHHcCCC
Q 022250 113 FTD---ASTVYDNVKQATAFGMR 132 (300)
Q Consensus 113 fT~---p~~~~~~~~~al~~G~~ 132 (300)
.|. |--..+.++.+++..+.
T Consensus 245 sTsa~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 245 STSAPHPIITREMVERALKIRKR 267 (414)
T ss_pred ecCCCccccCHHHHHHHHhcccC
Confidence 762 33347788888887766
No 288
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.06 E-value=0.14 Score=48.88 Aligned_cols=115 Identities=12% Similarity=0.110 Sum_probs=68.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEE---EEEec-CCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA---GAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv---g~vd~-~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV 110 (300)
.++|+| |+||..|+.+.+.+.+ .++.+- -.-.. ...|+... +-| ..+.+.+--++.+ .++|++
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Lee-r~fpv~~l~l~~s~~~s~gk~i~-f~g----~~~~V~~l~~~~f------~~vDia 69 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQ-SDLEIEQISIVEIEPFGEEQGIR-FNN----KAVEQIAPEEVEW------ADFNYV 69 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHh-cCCchhheeecccccccCCCEEE-ECC----EEEEEEECCccCc------ccCCEE
Confidence 479999 9999999999997764 455322 11111 22233221 111 1222221111223 378998
Q ss_pred EEcCCchhHHHHHHHHHHcCCCEEEeCCCC-------------CHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHI-------------QLETVSALSAFCDKASMGCLIAPTLSIGS 169 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~-------------~~e~~~~L~~~a~~~~i~iv~a~N~SiGv 169 (300)
+ |+..+...+.+..+.++|..||--+..| +++.++.+ - + ..++-.||=|.=.
T Consensus 70 ~-fag~~~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~---~-~--~~IIanPNCsTi~ 134 (322)
T PRK06901 70 F-FAGKMAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAEL---R-Q--RNIVSLPDPQVSQ 134 (322)
T ss_pred E-EcCHHHHHHHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcC---c-C--CCEEECCcHHHHH
Confidence 8 6777778999999999999888766444 33332222 1 2 2478889977654
No 289
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.95 E-value=0.25 Score=49.99 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=26.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
.||+|+|+ |.||+.++..+.. .+++++ ++|.+
T Consensus 6 ~kV~VIGa-G~MG~gIA~~la~-aG~~V~-l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGA-GAMGAGIAQVAAS-AGHQVL-LYDIR 37 (503)
T ss_pred cEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCC
Confidence 57999998 9999999998874 588876 56753
No 290
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.94 E-value=0.2 Score=47.48 Aligned_cols=71 Identities=21% Similarity=0.209 Sum_probs=41.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC---CCc--chhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGE--DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~--d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (300)
..||+|+|+ |++|..++-.+....-..=+..+|.+. .|. |............+..+.|++++ .++|+
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-------~~adi 74 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-------ANSKV 74 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-------CCCCE
Confidence 469999998 999999998887654443344678532 121 21111111011123334688764 47999
Q ss_pred EEEc
Q 022250 110 VIDF 113 (300)
Q Consensus 110 VIDf 113 (300)
||.+
T Consensus 75 vvit 78 (312)
T cd05293 75 VIVT 78 (312)
T ss_pred EEEC
Confidence 9864
No 291
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.88 E-value=0.46 Score=43.40 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=51.0
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID 112 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVID 112 (300)
|+.+|.|.|++|.+|+.+++.+.+ .+.+++.. +++. .. ++++.+ ...+ +..|
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~-~G~~Vi~~-~r~~--~~------------------~~~l~~-----~~~~~~~~D 55 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQS-DGWRVFAT-CRKE--ED------------------VAALEA-----EGLEAFQLD 55 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEE-ECCH--HH------------------HHHHHH-----CCceEEEcc
Confidence 345799999999999999999875 57887764 3321 11 112211 1233 3468
Q ss_pred cCCchhHHHHHHHHHHc---CCCEEEeCCC
Q 022250 113 FTDASTVYDNVKQATAF---GMRSVVYVPH 139 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~---G~~vVigTTG 139 (300)
.+.++.....+..+.+. .+++|+-..|
T Consensus 56 l~d~~~~~~~~~~~~~~~~g~id~li~~Ag 85 (277)
T PRK05993 56 YAEPESIAALVAQVLELSGGRLDALFNNGA 85 (277)
T ss_pred CCCHHHHHHHHHHHHHHcCCCccEEEECCC
Confidence 88888777777666542 5788876654
No 292
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.87 E-value=0.56 Score=43.63 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=55.8
Q ss_pred CCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EE
Q 022250 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VV 110 (300)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VV 110 (300)
+.++..+.|.|||+++|+++++.+++ .++.|+-+..+. ....++. .++++... ..++ ..
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~-~g~~liLvaR~~---~kL~~la-----------~~l~~~~~-----v~v~vi~ 62 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLAR-RGYNLILVARRE---DKLEALA-----------KELEDKTG-----VEVEVIP 62 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCcH---HHHHHHH-----------HHHHHhhC-----ceEEEEE
Confidence 34467899999999999999999885 577777544321 1111111 11111110 1234 36
Q ss_pred EEcCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250 111 IDFTDASTVYDNVKQATAF--GMRSVVYVPH 139 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~--G~~vVigTTG 139 (300)
+|.|.|+..........+. .+.++|=.-|
T Consensus 63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 63 ADLSDPEALERLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred CcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence 7889998888877776676 6888886554
No 293
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=93.81 E-value=0.096 Score=51.66 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=47.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc--eecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
.+|+|+|+ |.||+.+++.+.. .+.+-+-+++++. ..+..++ ..++.. .++++.+.+ .++|+||.+
T Consensus 183 ~~vlViGa-G~iG~~~a~~L~~-~G~~~V~v~~r~~--~ra~~la---~~~g~~~~~~~~~~~~l------~~aDvVI~a 249 (423)
T PRK00045 183 KKVLVIGA-GEMGELVAKHLAE-KGVRKITVANRTL--ERAEELA---EEFGGEAIPLDELPEAL------AEADIVISS 249 (423)
T ss_pred CEEEEECc-hHHHHHHHHHHHH-CCCCeEEEEeCCH--HHHHHHH---HHcCCcEeeHHHHHHHh------ccCCEEEEC
Confidence 68999998 9999999998874 4664344566542 1222232 122221 234555666 378999998
Q ss_pred CC-chhH--HHHHHHHH
Q 022250 114 TD-ASTV--YDNVKQAT 127 (300)
Q Consensus 114 T~-p~~~--~~~~~~al 127 (300)
|. |... .+.+..++
T Consensus 250 T~s~~~~i~~~~l~~~~ 266 (423)
T PRK00045 250 TGAPHPIIGKGMVERAL 266 (423)
T ss_pred CCCCCcEEcHHHHHHHH
Confidence 84 3333 44555444
No 294
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=93.76 E-value=0.35 Score=48.09 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=56.2
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCc-----EEEEEEecCC-----CCc-------chh----h-----hhcCcCCCCcce
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSHS-----VGE-------DIG----M-----VCDMEQPLEIPV 90 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~-----eLvg~vd~~~-----~g~-------d~~----~-----~~g~~~~~gv~v 90 (300)
||.|+|| |.+|..+++.+.. .++ .-+-++|.+. .++ |+| + +..+.....+..
T Consensus 1 kVlvVGa-GGlGcE~lKnLal-~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a 78 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFAL-MGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITA 78 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Confidence 6899998 9999999999874 566 4555677321 111 111 0 001111112222
Q ss_pred ec-CH---------HHHHhcccccCCccEEEEcC-CchhHHHHHHHHHHcCCCEEEe-CCCC
Q 022250 91 MS-DL---------TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVY-VPHI 140 (300)
Q Consensus 91 ~~-dl---------~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vVig-TTG~ 140 (300)
+. .+ ++.+ .++|+||++. .+++-...-..|..+++|+|.+ |.|+
T Consensus 79 ~~~~v~~~~~~~~~~~f~------~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~ 134 (435)
T cd01490 79 LQNRVGPETEHIFNDEFW------EKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGT 134 (435)
T ss_pred EecccChhhhhhhhHHHh------cCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccc
Confidence 21 11 1223 3689999987 4555566678999999999954 4343
No 295
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.76 E-value=0.34 Score=44.92 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=53.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCc-------CCCCcceecCHHHHHhcccccCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-------QPLEIPVMSDLTMVLGSISQSKA 106 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~-------~~~gv~v~~dl~~~l~~~~~~~~ 106 (300)
|||+|+|+ |.||..++..+.+. +.++..+ ++.. ....+. |+. ........++.+++. .+
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~-g~~V~~~-~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~ 68 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEA-GRDVTFL-VRPK---RAKALRERGLVIRSDHGDAVVPGPVITDPEELT------GP 68 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHC-CCceEEE-ecHH---HHHHHHhCCeEEEeCCCeEEecceeecCHHHcc------CC
Confidence 58999998 99999999988754 5665543 3311 111100 000 001112245555554 47
Q ss_pred ccEEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCH
Q 022250 107 RAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL 142 (300)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~ 142 (300)
+|++|-++.+..+.+.+..... .+..+|+-..|+..
T Consensus 69 ~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~ 107 (305)
T PRK12921 69 FDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ 107 (305)
T ss_pred CCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence 8999988876666665554443 34444444458753
No 296
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=93.72 E-value=0.13 Score=48.13 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=31.7
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
.+.||+|.|+.|.+||-+.-++..+|.+.-.+.+|.
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi 62 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 62 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhcCcccceeeeeec
Confidence 369999999999999999998888888877778884
No 297
>PLN02477 glutamate dehydrogenase
Probab=93.71 E-value=0.48 Score=46.75 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=72.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCcC------CC-CcceecCHHHHHhccc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------PL-EIPVMSDLTMVLGSIS 102 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~------~~-gv~v~~dl~~~l~~~~ 102 (300)
-.||+|.|+ |++|+..++.+. ..+..++++.|.+ +.|-|..++..... .+ +... -+.++++.
T Consensus 206 g~~VaIqGf-GnVG~~~A~~L~-e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~--- 279 (410)
T PLN02477 206 GQTFVIQGF-GNVGSWAAQLIH-EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILV--- 279 (410)
T ss_pred CCEEEEECC-CHHHHHHHHHHH-HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCcccee---
Confidence 378999998 999999999876 4689999999853 44666554421100 01 1111 13456664
Q ss_pred ccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250 103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI 167 (300)
Q Consensus 103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si 167 (300)
.++||+|=+...... .+++. +-+..+|+|-. + ++++..+.| +++ .+++.|-+..
T Consensus 280 --~~~DvliP~Al~~~I~~~na~---~i~ak~I~egAN~p~t~ea~~~L----~~r--GI~~~PD~~a 336 (410)
T PLN02477 280 --EPCDVLIPAALGGVINKENAA---DVKAKFIVEAANHPTDPEADEIL----RKK--GVVVLPDIYA 336 (410)
T ss_pred --ccccEEeeccccccCCHhHHH---HcCCcEEEeCCCCCCCHHHHHHH----HHC--CcEEEChHHh
Confidence 589999976644433 44444 45899999976 3 555443333 444 4577776643
No 298
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=93.66 E-value=0.52 Score=45.65 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=61.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCC-----------------Cc--chhhhhcCcCCCCccee---
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV-----------------GE--DIGMVCDMEQPLEIPVM--- 91 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~-----------------g~--d~~~~~g~~~~~gv~v~--- 91 (300)
|.|+.|.|.||-+|..-.+.+.+.|+ +++++.....+. .. ...++... ..++.++
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~--~~~~~v~~G~ 78 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDL--LPGTEVLVGE 78 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhh--ccCceEEecH
Confidence 57899999999999999999998887 789987652110 00 00000000 0022332
Q ss_pred cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (300)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (300)
+.+.++.. ..++|+|+..-.-.+-..-...++++|+.+-...
T Consensus 79 ~~l~e~a~----~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLAN 120 (385)
T COG0743 79 EGLCELAA----EDDADVVMNAIVGAAGLLPTLAAIKAGKTIALAN 120 (385)
T ss_pred HHHHHHHh----cCCCCEEeehhhhhcccHHHHHHHHcCCceeecc
Confidence 23444443 3568888877665555666678888888887653
No 299
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=93.64 E-value=0.52 Score=43.00 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=25.0
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
||.|+|+ |.+|..+++.+.. .++.=.-++|.
T Consensus 1 kVlvvG~-GGlG~eilk~La~-~Gvg~i~ivD~ 31 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLAL-MGFGQIHVIDM 31 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence 6899998 9999999999875 56655666774
No 300
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=93.63 E-value=0.38 Score=47.65 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=27.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
.|||.|.|++|-+|+.+++.+.+ .+.++++ +|+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~-~G~~V~~-ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIG-RGDEVIV-IDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHH-CCCEEEE-EeC
Confidence 48999999999999999999886 4788886 443
No 301
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.60 E-value=0.26 Score=46.82 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=25.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
|||+|+|++|++|..++-.+...+-..=+..+|.+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 59999998899999999888755433223356653
No 302
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=93.58 E-value=0.35 Score=41.78 Aligned_cols=149 Identities=12% Similarity=0.138 Sum_probs=75.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
.+|+|+|+ |..|++++..+. +.+++++-...... ... +.+ .+.|..++ +++|+.+ ..|+|+-.++
T Consensus 5 k~IAViGy-GsQG~a~AlNLr-DSG~~V~Vglr~~s--~s~-~~A---~~~Gf~v~-~~~eAv~------~aDvV~~L~P 69 (165)
T PF07991_consen 5 KTIAVIGY-GSQGHAHALNLR-DSGVNVIVGLREGS--ASW-EKA---KADGFEVM-SVAEAVK------KADVVMLLLP 69 (165)
T ss_dssp SEEEEES--SHHHHHHHHHHH-HCC-EEEEEE-TTC--HHH-HHH---HHTT-ECC-EHHHHHH------C-SEEEE-S-
T ss_pred CEEEEECC-ChHHHHHHHHHH-hCCCCEEEEecCCC--cCH-HHH---HHCCCeec-cHHHHHh------hCCEEEEeCC
Confidence 58999998 999999999987 46888775554432 111 111 12344443 6677774 7899885554
Q ss_pred chhHH----HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEc
Q 022250 116 ASTVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES 191 (300)
Q Consensus 116 p~~~~----~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~ 191 (300)
-+... +.+.-.++.|.-++. .-||+- ....|.- ..++-+++.+-=+.|..+=.++.+ .+-.+-.--++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~f-ahGfni-~~~~i~p---p~~vdV~mvAPKgpG~~vR~~y~~--G~Gvp~l~AV~- 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVF-AHGFNI-HYGLIKP---PKDVDVIMVAPKGPGHLVRREYVE--GRGVPALIAVH- 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHH-HCTTS------TTSEEEEEEESSSCHHHHHHHHC--CTS--EEEEEE-
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEe-CCcchh-hcCcccC---CCCCeEEEEecCCCChHHHHHHHc--CCCceEEEEEE-
Confidence 33333 344555667765543 467764 2222221 133555544444667544333332 11122221222
Q ss_pred cCCCCCCCchHHHHHHHHHHh
Q 022250 192 RPNARDFPSPDATQIANNLSN 212 (300)
Q Consensus 192 Hh~K~DaPSGTA~~l~~~i~~ 212 (300)
.| +||.|+.++-++++
T Consensus 142 ----qD-~sg~A~~~ala~A~ 157 (165)
T PF07991_consen 142 ----QD-ASGKAKELALAYAK 157 (165)
T ss_dssp ----E--SSS-HHHHHHHHHH
T ss_pred ----EC-CCchHHHHHHHHHH
Confidence 34 78999999988875
No 303
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=93.58 E-value=0.67 Score=46.27 Aligned_cols=138 Identities=15% Similarity=0.151 Sum_probs=83.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---hcCc-------CC-----CCcceecCHH
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDME-------QP-----LEIPVMSDLT 95 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~---~g~~-------~~-----~gv~v~~dl~ 95 (300)
.+|+|.|. |++|+..++.+.+ .+.+++++.|.+ +.|-|..++ .... .. .+.... +-+
T Consensus 238 k~VaVqG~-GnVg~~aa~~L~e-~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~~~ 314 (454)
T PTZ00079 238 KTVVVSGS-GNVAQYAVEKLLQ-LGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-PGK 314 (454)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-CCc
Confidence 79999997 9999999998874 699999999853 345544333 1000 00 022212 233
Q ss_pred HHHhcccccCCccEEEEcCCchh-HHHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH---HH
Q 022250 96 MVLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GS 169 (300)
Q Consensus 96 ~~l~~~~~~~~~DVVIDfT~p~~-~~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si---Gv 169 (300)
+++. .++||.+=+..... ..+++....+++..+|++-- + .+++..+ -+ +++ .+++.|-+.. ||
T Consensus 315 ~~~~-----~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~---~L-~~~--GI~~~PD~~aNAGGV 383 (454)
T PTZ00079 315 KPWE-----VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATH---LF-KKN--GVIFCPGKAANAGGV 383 (454)
T ss_pred Cccc-----CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHH---HH-HHC--CcEEEChhhhcCCCe
Confidence 4443 58999997765444 37788888899999999976 3 4553322 22 443 4577676543 22
Q ss_pred HH-HHHHHHHhccCCCCeE
Q 022250 170 IL-LQQAAISASFHYKNVE 187 (300)
Q Consensus 170 ~l-l~~~a~~~~~~~~die 187 (300)
.. -.+..+....+.|+.|
T Consensus 384 ~vS~~E~~Qn~~~~~W~~e 402 (454)
T PTZ00079 384 AISGLEMSQNAARLQWTAE 402 (454)
T ss_pred eeehHHhhhhhcccCCCHH
Confidence 21 1344555555556543
No 304
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=93.53 E-value=0.27 Score=47.99 Aligned_cols=121 Identities=16% Similarity=0.077 Sum_probs=87.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-ee---c----CHHHHHhcccccCC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---S----DLTMVLGSISQSKA 106 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~---~----dl~~~l~~~~~~~~ 106 (300)
+-+|.+.|+ |.+.+-.++.+.++.+.++.-+.+.- .|+..++. ..+++ +. . .++..+ .+
T Consensus 2 ~~~vlllgs-g~v~~p~~d~ls~~~dv~vtva~~~~---~~~~~~~~---~~~~~av~ldv~~~~~~L~~~v------~~ 68 (445)
T KOG0172|consen 2 KKGVLLLGS-GFVSRPVADFLSRKKDVNVTVASRTL---KDAEALVK---GINIKAVSLDVADEELALRKEV------KP 68 (445)
T ss_pred CcceEEecC-ccccchHHHHHhhcCCceEEEehhhH---HHHHHHhc---CCCccceEEEccchHHHHHhhh------cc
Confidence 568999997 99999999999999999887665532 34444431 12221 11 1 223333 46
Q ss_pred ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (300)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ 170 (300)
-|++|--++...+.-.++.|..++.++| |+.+...++++|.+.+...|+.++=---.-+|.-
T Consensus 69 ~D~viSLlP~t~h~lVaK~~i~~~~~~v--tsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGid 130 (445)
T KOG0172|consen 69 LDLVISLLPYTFHPLVAKGCIITKEDSV--TSSYVDPELEELEKAAVPAGSTIMNEIGLDPGID 130 (445)
T ss_pred cceeeeeccchhhHHHHHHHHHhhcccc--cccccCHHHHhhhhhccCCCceEecccccCcchh
Confidence 7999988888888888899999999998 4566666889999999999887664444666665
No 305
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.44 E-value=0.45 Score=45.50 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=42.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
++|+|+|+ |+||+.+++.+.. -++++++ +|+... .... .+...++++++++ .+|+|+...+
T Consensus 147 ~~VgIIG~-G~IG~~vA~~L~~-~G~~V~~-~d~~~~--~~~~--------~~~~~~~l~ell~------~aDiVil~lP 207 (330)
T PRK12480 147 MTVAIIGT-GRIGAATAKIYAG-FGATITA-YDAYPN--KDLD--------FLTYKDSVKEAIK------DADIISLHVP 207 (330)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCEEEE-EeCChh--Hhhh--------hhhccCCHHHHHh------cCCEEEEeCC
Confidence 58999998 9999999998874 5888875 565421 0000 1223458999984 7899986654
No 306
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.42 E-value=0.26 Score=48.55 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=48.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
.+|+|+|+ |.||+.+++.+.. .++.-+-+++++. ..+..++ ...+. ..++++.+++ ..+|+||.+
T Consensus 181 ~~VlViGa-G~iG~~~a~~L~~-~G~~~V~v~~rs~--~ra~~la---~~~g~~~i~~~~l~~~l------~~aDvVi~a 247 (417)
T TIGR01035 181 KKALLIGA-GEMGELVAKHLLR-KGVGKILIANRTY--ERAEDLA---KELGGEAVKFEDLEEYL------AEADIVISS 247 (417)
T ss_pred CEEEEECC-hHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHH---HHcCCeEeeHHHHHHHH------hhCCEEEEC
Confidence 68999998 9999999998876 4533344566542 2222222 11221 1134666666 378999998
Q ss_pred CC-chhH--HHHHHHHHH
Q 022250 114 TD-ASTV--YDNVKQATA 128 (300)
Q Consensus 114 T~-p~~~--~~~~~~al~ 128 (300)
|. |... .+.+..+..
T Consensus 248 T~s~~~ii~~e~l~~~~~ 265 (417)
T TIGR01035 248 TGAPHPIVSKEDVERALR 265 (417)
T ss_pred CCCCCceEcHHHHHHHHh
Confidence 74 3333 455555544
No 307
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.40 E-value=2.3 Score=41.88 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=70.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec-C-HHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-d-l~~~l~~~~~~~~~DVVIDf 113 (300)
.+|.|+|. |++|..+++.+. ..+.++++ .|....-.....+-. ...|+.++. . .+..+ .++|+||--
T Consensus 6 ~~~~v~G~-g~~G~~~a~~l~-~~g~~v~~-~d~~~~~~~~~~l~~--~~~gi~~~~g~~~~~~~------~~~d~vv~s 74 (445)
T PRK04308 6 KKILVAGL-GGTGISMIAYLR-KNGAEVAA-YDAELKPERVAQIGK--MFDGLVFYTGRLKDALD------NGFDILALS 74 (445)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCCCchhHHHHhh--ccCCcEEEeCCCCHHHH------hCCCEEEEC
Confidence 58999998 999999988776 56788664 664321111111110 013555532 2 22333 368988843
Q ss_pred CCchhHHHHHHHHHHcCCCEE-----------------EeCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcHHHHHHHH
Q 022250 114 TDASTVYDNVKQATAFGMRSV-----------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (300)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vV-----------------igTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~ 174 (300)
+.-....+.+..|.++|+|++ |+-||-+-. -...|..+-+..+.......|+ |..++..
T Consensus 75 pgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni--G~~~~~~ 152 (445)
T PRK04308 75 PGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI--GTPVLEA 152 (445)
T ss_pred CCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc--cHHHHHH
Confidence 321122344555556666543 333432210 1223444444455555556674 4444332
Q ss_pred HHHHhccCCCCeEEEEc
Q 022250 175 AAISASFHYKNVEIVES 191 (300)
Q Consensus 175 ~a~~~~~~~~dieIiE~ 191 (300)
+.... ....|+-|+|.
T Consensus 153 ~~~~~-~~~~d~~VlE~ 168 (445)
T PRK04308 153 ELQRE-GKKADVWVLEL 168 (445)
T ss_pred HHhhc-CCCCcEEEEEe
Confidence 22111 12346677776
No 308
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=93.38 E-value=0.51 Score=45.44 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=27.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (300)
.+||.|.|++|-+|+.+++.+.+ .++++.++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~-~G~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKA-EGHYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHh-CCCEEEEEE
Confidence 58999999999999999999886 478888754
No 309
>PLN02206 UDP-glucuronate decarboxylase
Probab=93.34 E-value=0.47 Score=47.13 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (300)
+||.|.|++|-+|+.+++.+.+ .+.+++++
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~-~G~~V~~l 149 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMA-RGDSVIVV 149 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHH-CcCEEEEE
Confidence 7999999999999999999886 47888864
No 310
>PLN00203 glutamyl-tRNA reductase
Probab=93.27 E-value=0.22 Score=50.59 Aligned_cols=83 Identities=16% Similarity=0.248 Sum_probs=49.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
..||+|+|+ |.||+.+++.+.. .+++=+-+++++. ..+..+...-....+ ..++++.+++ .++|+||-
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~-~G~~~V~V~nRs~--era~~La~~~~g~~i~~~~~~dl~~al------~~aDVVIs 335 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVS-KGCTKMVVVNRSE--ERVAALREEFPDVEIIYKPLDEMLACA------AEADVVFT 335 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHh-CCCCeEEEEeCCH--HHHHHHHHHhCCCceEeecHhhHHHHH------hcCCEEEE
Confidence 368999998 9999999998875 4554445566543 222333210000112 2235666666 47899998
Q ss_pred cC---CchhHHHHHHHHH
Q 022250 113 FT---DASTVYDNVKQAT 127 (300)
Q Consensus 113 fT---~p~~~~~~~~~al 127 (300)
.| .|-...+.++.+.
T Consensus 336 AT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 336 STSSETPLFLKEHVEALP 353 (519)
T ss_pred ccCCCCCeeCHHHHHHhh
Confidence 76 3333466666554
No 311
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=93.24 E-value=0.52 Score=46.77 Aligned_cols=92 Identities=13% Similarity=0.133 Sum_probs=52.5
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID 112 (300)
|+|||.|+|. |.=..+++..+.+. +.++..+......|. ..++ ..+ +.+ ..|++++++ +++..++|.||-
T Consensus 1 ~~~kVLvlG~-G~re~al~~~l~~~-g~~v~~~~~~~Npg~--~~~a---~~~-~~~~~~d~e~l~~-~~~~~~id~Vi~ 71 (435)
T PRK06395 1 MTMKVMLVGS-GGREDAIARAIKRS-GAILFSVIGHENPSI--KKLS---KKY-LFYDEKDYDLIED-FALKNNVDIVFV 71 (435)
T ss_pred CceEEEEECC-cHHHHHHHHHHHhC-CCeEEEEECCCChhh--hhcc---cce-eecCCCCHHHHHH-HHHHhCCCEEEE
Confidence 6899999997 77677888777765 467777654221110 0011 011 111 246666543 233467898875
Q ss_pred cCCchhHHHHHHHHHHcCCCEE
Q 022250 113 FTDASTVYDNVKQATAFGMRSV 134 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vV 134 (300)
...+......+....+.|++++
T Consensus 72 ~~d~~l~~~~~~~l~~~Gi~v~ 93 (435)
T PRK06395 72 GPDPVLATPLVNNLLKRGIKVA 93 (435)
T ss_pred CCChHHHHHHHHHHHHCCCcEE
Confidence 4433333444556677888876
No 312
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.24 E-value=0.39 Score=47.56 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=26.1
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
+|||+|+|. |.||.-++..+.+ ++++++ +|.+
T Consensus 6 ~mkI~vIGl-GyvGlpmA~~la~--~~~V~g-~D~~ 37 (425)
T PRK15182 6 EVKIAIIGL-GYVGLPLAVEFGK--SRQVVG-FDVN 37 (425)
T ss_pred CCeEEEECc-CcchHHHHHHHhc--CCEEEE-EeCC
Confidence 479999996 9999999998764 588876 7753
No 313
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.16 E-value=0.46 Score=46.97 Aligned_cols=82 Identities=11% Similarity=0.159 Sum_probs=47.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
-+|+|+|+ |.+|+.+++.+.. -+.+++. +|.+.. .. +.+ ...|..+. ++++++ ..+|+||++|.
T Consensus 203 ktVvViG~-G~IG~~va~~ak~-~Ga~ViV-~d~d~~--R~-~~A---~~~G~~~~-~~~e~v------~~aDVVI~atG 266 (413)
T cd00401 203 KVAVVAGY-GDVGKGCAQSLRG-QGARVIV-TEVDPI--CA-LQA---AMEGYEVM-TMEEAV------KEGDIFVTTTG 266 (413)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EECChh--hH-HHH---HhcCCEEc-cHHHHH------cCCCEEEECCC
Confidence 58999998 9999999997764 5777554 665421 11 111 12344322 345555 35788888775
Q ss_pred chhHHHH-HHHHHHcCCCE
Q 022250 116 ASTVYDN-VKQATAFGMRS 133 (300)
Q Consensus 116 p~~~~~~-~~~al~~G~~v 133 (300)
....... ...+++.|.-+
T Consensus 267 ~~~~i~~~~l~~mk~Ggil 285 (413)
T cd00401 267 NKDIITGEHFEQMKDGAIV 285 (413)
T ss_pred CHHHHHHHHHhcCCCCcEE
Confidence 4433332 24455555444
No 314
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=93.16 E-value=0.41 Score=45.98 Aligned_cols=129 Identities=14% Similarity=0.214 Sum_probs=77.4
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCC-c----EEEEE--EecCCCC-------------cchhhhhcCcCCCCcceecC
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARG-M----EVAGA--IDSHSVG-------------EDIGMVCDMEQPLEIPVMSD 93 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~----eLvg~--vd~~~~g-------------~d~~~~~g~~~~~gv~v~~d 93 (300)
+++||.|+|. |+=|+++++.+.++-. + .-|.. .+....| +....+-|..-+.++...+|
T Consensus 20 ~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 20 DPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred CceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 4699999996 9999999998865321 1 11211 1111122 11122334444556777789
Q ss_pred HHHHHhcccccCCccEEEEcCCchhH----HHHHHHHHHcCCCEEEeCCCCCHH-------HHHHHHHHhhhCCCeEEEc
Q 022250 94 LTMVLGSISQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLE-------TVSALSAFCDKASMGCLIA 162 (300)
Q Consensus 94 l~~~l~~~~~~~~~DVVIDfT~p~~~----~~~~~~al~~G~~vVigTTG~~~e-------~~~~L~~~a~~~~i~iv~a 162 (300)
+.++. .++|++| |..|... .+.+.-.++.+.+.|+-+-|+... -..++..-+-...+.++..
T Consensus 99 l~ea~------~dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~G 171 (372)
T KOG2711|consen 99 LVEAA------KDADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMG 171 (372)
T ss_pred HHHHh------ccCCEEE-EeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecC
Confidence 99987 4799998 6555443 345566677888888877787632 1233433344444566777
Q ss_pred CCCcHHHH
Q 022250 163 PTLSIGSI 170 (300)
Q Consensus 163 ~N~SiGv~ 170 (300)
||+.-=|.
T Consensus 172 aNiA~EVa 179 (372)
T KOG2711|consen 172 ANIASEVA 179 (372)
T ss_pred CchHHHHH
Confidence 77766543
No 315
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=93.14 E-value=0.34 Score=43.00 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=51.7
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVID 112 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVID 112 (300)
||.+|.|.|++|.+|+.+++.+.+ .+.+++....++. +....+ .+++... ..++ -+.+|
T Consensus 1 m~k~ilItGas~giG~~la~~l~~-~g~~v~~~~~~~~--~~~~~~--------------~~~~~~~---~~~~~~~~~D 60 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAA-RGWSVGINYARDA--AAAEET--------------ADAVRAA---GGRACVVAGD 60 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHH--------------HHHHHhc---CCcEEEEEec
Confidence 567899999999999999999885 5778765443321 111110 0111100 0111 24467
Q ss_pred cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250 113 FTDASTVYDNVKQATAF--GMRSVVYVPH 139 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~--G~~vVigTTG 139 (300)
.+.++...+.+..+.+. .+.+|+-..|
T Consensus 61 l~~~~~~~~~~~~~~~~~~~id~li~~ag 89 (248)
T PRK06947 61 VANEADVIAMFDAVQSAFGRLDALVNNAG 89 (248)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 78888777777665543 4778886665
No 316
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.11 E-value=1.4 Score=43.75 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=24.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
.||.|+|+ |..|...++.+. ..+.+++ ++|.
T Consensus 17 ~~v~viG~-G~~G~~~A~~L~-~~G~~V~-~~d~ 47 (480)
T PRK01438 17 LRVVVAGL-GVSGFAAADALL-ELGARVT-VVDD 47 (480)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeC
Confidence 58999998 999999998776 4678855 4663
No 317
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.10 E-value=0.64 Score=45.26 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=28.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
++||.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~-~G~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVR-RGYNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEEe
Confidence 57999999999999999999875 5788887653
No 318
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.09 E-value=0.4 Score=44.26 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=26.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
+||.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~-g~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ-GEEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC-CCEEEEEEe
Confidence 47999999999999999998854 678776544
No 319
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=93.07 E-value=0.41 Score=48.62 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=45.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
.+|+|+|. |+||+.+++.+.. -++++.+ +|+... .+.. .+.++...+++++++. .+|+|+-..+
T Consensus 139 ktvgIiG~-G~IG~~vA~~l~~-fG~~V~~-~d~~~~-~~~~------~~~g~~~~~~l~ell~------~aDvV~l~lP 202 (525)
T TIGR01327 139 KTLGVIGL-GRIGSIVAKRAKA-FGMKVLA-YDPYIS-PERA------EQLGVELVDDLDELLA------RADFITVHTP 202 (525)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCEEEE-ECCCCC-hhHH------HhcCCEEcCCHHHHHh------hCCEEEEccC
Confidence 68999997 9999999998874 5788775 665321 1111 1345555578999984 7899886554
No 320
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=93.06 E-value=0.76 Score=41.99 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=24.9
Q ss_pred eEEEEcCCchHHHHHHHHHHhcC-CcEEEEE
Q 022250 37 KVIINGAVKEIGRAAVIAVTKAR-GMEVAGA 66 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~ 66 (300)
||.|.|++|.+|+.+++.+.+.. +.+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~ 31 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL 31 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence 58999999999999999987653 4777753
No 321
>PRK06988 putative formyltransferase; Provisional
Probab=93.04 E-value=0.22 Score=47.19 Aligned_cols=75 Identities=16% Similarity=0.296 Sum_probs=47.6
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC--CCc----chhhhhcCcCCCCcceec--CH--HHHHhcccc
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGE----DIGMVCDMEQPLEIPVMS--DL--TMVLGSISQ 103 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g~----d~~~~~g~~~~~gv~v~~--dl--~~~l~~~~~ 103 (300)
|||||++.|. +.+|....+.+.+ .++++++++..+. .++ .+.+++ .+.|+|++. ++ ++.++. .+
T Consensus 1 ~~mkIvf~Gs-~~~a~~~L~~L~~-~~~~i~~Vvt~~d~~~~~~~~~~v~~~A---~~~gip~~~~~~~~~~~~~~~-l~ 74 (312)
T PRK06988 1 MKPRAVVFAY-HNVGVRCLQVLLA-RGVDVALVVTHEDNPTENIWFGSVAAVA---AEHGIPVITPADPNDPELRAA-VA 74 (312)
T ss_pred CCcEEEEEeC-cHHHHHHHHHHHh-CCCCEEEEEcCCCCCccCcCCCHHHHHH---HHcCCcEEccccCCCHHHHHH-HH
Confidence 5789999995 9999999998875 4789999887431 111 233444 456777753 22 122211 11
Q ss_pred cCCccEEEEcC
Q 022250 104 SKARAVVIDFT 114 (300)
Q Consensus 104 ~~~~DVVIDfT 114 (300)
..++|++|-+.
T Consensus 75 ~~~~Dliv~~~ 85 (312)
T PRK06988 75 AAAPDFIFSFY 85 (312)
T ss_pred hcCCCEEEEeh
Confidence 35799887665
No 322
>PRK14030 glutamate dehydrogenase; Provisional
Probab=92.95 E-value=0.66 Score=46.24 Aligned_cols=119 Identities=13% Similarity=0.070 Sum_probs=75.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCc-----------CCC-CcceecCH
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDME-----------QPL-EIPVMSDL 94 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~---~g~~-----------~~~-gv~v~~dl 94 (300)
..||+|-|. |++|+..++.+.+ .+.+|+++-|+ ++.|-|...+ .... ..+ +.... +-
T Consensus 228 g~~vaIQGf-GnVG~~aA~~L~e-~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~ 304 (445)
T PRK14030 228 GKTVAISGF-GNVAWGAATKATE-LGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AG 304 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CC
Confidence 379999997 9999999998864 69999998774 2345554331 1000 011 22222 33
Q ss_pred HHHHhcccccCCccEEEEcCCchh-HHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250 95 TMVLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDfT~p~~-~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~S 166 (300)
++++. .++||.|=+..... ..+++....+++..+|+|-- +.+..+..++ -+++| +++.|-+-
T Consensus 305 ~~~~~-----~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~i---L~~rG--I~~vPD~~ 368 (445)
T PRK14030 305 KKPWE-----QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDK---FIAAK--QLFAPGKA 368 (445)
T ss_pred cccee-----ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH---HHHCC--CEEeCcce
Confidence 55664 68999997765444 47788888899999999976 4332222222 24444 56667654
No 323
>PRK05693 short chain dehydrogenase; Provisional
Probab=92.93 E-value=0.77 Score=41.65 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=51.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT 114 (300)
.++.|.|++|.+|+.+++.+.+ .+.+++.. +++. .+ ++++.+ ...+ +.+|.+
T Consensus 2 k~vlItGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~------------------~~~~~~-----~~~~~~~~Dl~ 54 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKA-AGYEVWAT-ARKA--ED------------------VEALAA-----AGFTAVQLDVN 54 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HH------------------HHHHHH-----CCCeEEEeeCC
Confidence 5799999999999999999875 57887754 3321 11 112211 1233 347888
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
.++...+.+..+.+. ++++|+=..|.
T Consensus 55 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 55 DGAALARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 888887777766553 57888776653
No 324
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=92.93 E-value=0.73 Score=42.84 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=23.4
Q ss_pred EEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 39 ~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
.|.|++|-+|+.+++.+.+.....=|-++|.
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~ 31 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDR 31 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence 3789999999999999997665333445664
No 325
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.92 E-value=1.3 Score=42.27 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=26.7
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
.|.||+|+|+.|++|+.++..+....-..-+..+|.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 367999999889999999998875443333345664
No 326
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.82 E-value=0.71 Score=46.00 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=70.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhh----------c----CcCCCCcceecCHHH
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVC----------D----MEQPLEIPVMSDLTM 96 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~----------g----~~~~~gv~v~~dl~~ 96 (300)
.||+|.|. |++|+..++.+.+ .+.+++++.|. ++.|-|..++. + .....+.... +.++
T Consensus 229 ~rVaVQGf-GNVG~~aA~~L~e-~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~ 305 (444)
T PRK14031 229 KVCLVSGS-GNVAQYTAEKVLE-LGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGAR 305 (444)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCcc
Confidence 79999998 9999999998874 79999999883 22344442221 0 0001122222 3455
Q ss_pred HHhcccccCCccEEEEcCCchh-HHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250 97 VLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL 165 (300)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~-~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~ 165 (300)
++. .++|+++=+..... ..+++......|+.+|++-- +.+..+ ..+.+. +++ +++.|-+
T Consensus 306 ~~~-----~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~e--A~~~L~-~rg--I~~~PD~ 366 (444)
T PRK14031 306 PWG-----EKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPE--AIKVFQ-DAK--ILYAPGK 366 (444)
T ss_pred ccc-----CCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHH--HHHHHH-HCC--cEEeChh
Confidence 554 57898886554443 36677777778888888755 433222 223333 333 4555655
No 327
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=92.74 E-value=0.38 Score=47.01 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=41.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-.+|||+|+ |+||+.+++.+.. =++++.+ +|+.. .+.+ .. ..+.++++++. .+|+|+-.+
T Consensus 116 gktvGIIG~-G~IG~~vA~~l~a-~G~~V~~-~dp~~--~~~~--------~~-~~~~~L~ell~------~sDiI~lh~ 175 (378)
T PRK15438 116 DRTVGIVGV-GNVGRRLQARLEA-LGIKTLL-CDPPR--ADRG--------DE-GDFRSLDELVQ------EADILTFHT 175 (378)
T ss_pred CCEEEEECc-CHHHHHHHHHHHH-CCCEEEE-ECCcc--cccc--------cc-cccCCHHHHHh------hCCEEEEeC
Confidence 368999998 9999999998874 5898875 56532 1100 00 12568889884 688887544
No 328
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=92.73 E-value=0.71 Score=47.70 Aligned_cols=112 Identities=14% Similarity=0.179 Sum_probs=77.7
Q ss_pred ceEEEEcCCch---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
--|+|+|++++ +|..+.+.+.+..+=++..+ .+. ..+. .|++.|++..++- ..+|+.|-
T Consensus 11 ~svavigas~~~~~vg~~i~~nL~~~g~g~i~PV-np~-----~~~v------~G~~ay~s~~~lp------~~~dlav~ 72 (598)
T COG1042 11 KSIAVIGASERPGKLGYEILRNLLEYGQGKIYPV-NPK-----YDEV------LGVKAYTSVADLP------DAPDLAVI 72 (598)
T ss_pred ceEEEeeccCCcchhHHHHHHHHHhcCCCceEec-Ccc-----cccc------ccccccchHhhCC------CCCCeeEE
Confidence 46999999866 67778888776543344432 111 1122 4678898888875 47899999
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeCC-CCCH------HHHHHHHHHhhhCCCeEEEcCCCc
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQL------ETVSALSAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~------e~~~~L~~~a~~~~i~iv~a~N~S 166 (300)
.+++..+.+.+..|-+.|+...+--+ ||.+ +-.+++.++|++.++. ++.||--
T Consensus 73 ~v~~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~r-ligPn~~ 132 (598)
T COG1042 73 VVPAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMR-IIGPNCL 132 (598)
T ss_pred EechhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCce-Eeccccc
Confidence 99999999999999999977665544 7653 2234455578877775 6668843
No 329
>PRK14982 acyl-ACP reductase; Provisional
Probab=92.63 E-value=0.23 Score=47.87 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=25.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEec
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (300)
.+|+|+|++|.||+.+++.+.+..+. +|+ ++++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R 189 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR 189 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence 68999999999999999999754333 444 3444
No 330
>PLN02240 UDP-glucose 4-epimerase
Probab=92.59 E-value=0.86 Score=42.79 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=27.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (300)
+.||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~ 36 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLL-AGYKVVVID 36 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence 47999999999999999999886 468887753
No 331
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.59 E-value=0.76 Score=42.35 Aligned_cols=126 Identities=19% Similarity=0.119 Sum_probs=64.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
.+++|+|+ |.||+.++..+.+. +.++. +++++. ..+.+++..-...+.....++++... .++|+||.+|+
T Consensus 118 k~vliiGa-Gg~g~aia~~L~~~-g~~v~-v~~R~~--~~~~~la~~~~~~~~~~~~~~~~~~~-----~~~DivInatp 187 (270)
T TIGR00507 118 QRVLIIGA-GGAARAVALPLLKA-DCNVI-IANRTV--SKAEELAERFQRYGEIQAFSMDELPL-----HRVDLIINATS 187 (270)
T ss_pred CEEEEEcC-cHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHHHHHhhcCceEEechhhhcc-----cCccEEEECCC
Confidence 57999998 99999999998854 56654 556542 12222221001112111123333221 36899998885
Q ss_pred chh---HH--HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250 116 AST---VY--DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179 (300)
Q Consensus 116 p~~---~~--~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~ 179 (300)
... .. ......++.+. +|+-..-...+. .+.+.|+++|.+++- .+++ |+.|++.++
T Consensus 188 ~gm~~~~~~~~~~~~~l~~~~-~v~D~~y~p~~T--~ll~~A~~~G~~~vd----G~~M-l~~Qa~~~f 248 (270)
T TIGR00507 188 AGMSGNIDEPPVPAEKLKEGM-VVYDMVYNPGET--PFLAEAKSLGTKTID----GLGM-LVAQAALAF 248 (270)
T ss_pred CCCCCCCCCCCCCHHHcCCCC-EEEEeccCCCCC--HHHHHHHHCCCeeeC----CHHH-HHHHHHHHH
Confidence 321 10 11123344454 343322111111 477778888887663 3333 345555554
No 332
>PRK06932 glycerate dehydrogenase; Provisional
Probab=92.55 E-value=1 Score=42.73 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=41.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-.+|+|+|+ |++|+.+++.+. .=++++++ +|+.. .+ . ... -+.++++++. .+|+|+...
T Consensus 147 gktvgIiG~-G~IG~~va~~l~-~fg~~V~~-~~~~~--~~--~-------~~~-~~~~l~ell~------~sDiv~l~~ 205 (314)
T PRK06932 147 GSTLGVFGK-GCLGTEVGRLAQ-ALGMKVLY-AEHKG--AS--V-------CRE-GYTPFEEVLK------QADIVTLHC 205 (314)
T ss_pred CCEEEEECC-CHHHHHHHHHHh-cCCCEEEE-ECCCc--cc--c-------ccc-ccCCHHHHHH------hCCEEEEcC
Confidence 378999998 999999999876 45888875 55431 10 0 011 1468999995 789998655
Q ss_pred C
Q 022250 115 D 115 (300)
Q Consensus 115 ~ 115 (300)
+
T Consensus 206 P 206 (314)
T PRK06932 206 P 206 (314)
T ss_pred C
Confidence 3
No 333
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.50 E-value=0.38 Score=45.27 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=24.3
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH 70 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~ 70 (300)
||+|+|+ |.+|+.++..+....-. +|+ ++|.+
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~-l~D~~ 34 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELV-LIDIN 34 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence 8999998 99999999988765432 544 56753
No 334
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=92.49 E-value=1 Score=43.33 Aligned_cols=169 Identities=18% Similarity=0.147 Sum_probs=102.5
Q ss_pred CCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchh------hhhcCc-CCCCcceecCHHHHHhcccc
Q 022250 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG------MVCDME-QPLEIPVMSDLTMVLGSISQ 103 (300)
Q Consensus 31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~------~~~g~~-~~~gv~v~~dl~~~l~~~~~ 103 (300)
|+-|..-+.|.|++|-.|+.+++.+.. .+... ++. |++.. ..+|.. ..+++-+-+.+++.+
T Consensus 2 ~~e~e~d~iiYGAtGy~G~lvae~l~~-~g~~~--aLA----gRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~----- 69 (382)
T COG3268 2 PMEREYDIIIYGATGYAGGLVAEYLAR-EGLTA--ALA----GRSSAKLDALRASLGPEAAVFPLGVPAALEAMA----- 69 (382)
T ss_pred CCCcceeEEEEccccchhHHHHHHHHH-cCCch--hhc----cCCHHHHHHHHHhcCccccccCCCCHHHHHHHH-----
Confidence 334557799999999999999998874 45544 121 22221 112221 111221223455555
Q ss_pred cCCccEEEEcCCchhH--HHHHHHHHHcCCCEEEeCCC-CC-HHHHHHH-HHHhhhCCCeEEEcCCCc-HHHHH-HHHHH
Q 022250 104 SKARAVVIDFTDASTV--YDNVKQATAFGMRSVVYVPH-IQ-LETVSAL-SAFCDKASMGCLIAPTLS-IGSIL-LQQAA 176 (300)
Q Consensus 104 ~~~~DVVIDfT~p~~~--~~~~~~al~~G~~vVigTTG-~~-~e~~~~L-~~~a~~~~i~iv~a~N~S-iGv~l-l~~~a 176 (300)
...+||+.+.-|-.. ...+..|+.+|.+-.-= || .. -|+...+ .+-|++.|+.|+-..-|- |-..+ +..+.
T Consensus 70 -~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~Di-TGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl~v~~l~ 147 (382)
T COG3268 70 -SRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADI-TGEIMFFENSIDLYHAQAADAGARIIPGCGFDSIPSDLGVYALL 147 (382)
T ss_pred -hcceEEEeccccccccccHHHHHHHHhCCCeeec-cccHHHHHHHHHHHHHHHHhcCCEEeccCCCCcCccchHHHHHH
Confidence 478999998877655 67899999999998843 44 11 2344444 677889999999877773 33223 33333
Q ss_pred HHhccCCCCeEEEEccC-CCCCC----CchHHHHHHHHHHhcC
Q 022250 177 ISASFHYKNVEIVESRP-NARDF----PSPDATQIANNLSNLG 214 (300)
Q Consensus 177 ~~~~~~~~dieIiE~Hh-~K~Da----PSGTA~~l~~~i~~~~ 214 (300)
++.- ..+-=|.+..|- -+-+. --|||....|.++...
T Consensus 148 ~~~~-~d~~~~~~~t~l~l~s~t~~g~S~GTaat~~e~l~~~~ 189 (382)
T COG3268 148 KQAL-PDGTEELIATHLALGSFTGSGISGGTAATSVEGLATAG 189 (382)
T ss_pred HhhC-cccccchhhhheeeeecccCCcccccHHHHHHHHHhcc
Confidence 3332 223345666675 34443 4589999999987743
No 335
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=92.48 E-value=0.34 Score=45.76 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
|.||.|.|++|-+|+.+++.+.+ .+.+++.++++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~-~g~~~v~~~~~ 34 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIIN-ETSDAVVVVDK 34 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHH-cCCCEEEEEec
Confidence 46899999999999999999985 46666666664
No 336
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.43 E-value=1.6 Score=44.51 Aligned_cols=126 Identities=8% Similarity=0.072 Sum_probs=66.3
Q ss_pred CCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCc
Q 022250 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKAR 107 (300)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~ 107 (300)
.+++=+|.|+|+ |++|+.+++.+.+ .+.+++ ++|.++ +...++ .+.|++++ +|. +++++ ..-+++
T Consensus 414 ~~~~~hiiI~G~-G~~G~~la~~L~~-~g~~vv-vId~d~--~~~~~~----~~~g~~~i~GD~~~~-~~L~~-a~i~~a 482 (558)
T PRK10669 414 VDICNHALLVGY-GRVGSLLGEKLLA-AGIPLV-VIETSR--TRVDEL----RERGIRAVLGNAANE-EIMQL-AHLDCA 482 (558)
T ss_pred cccCCCEEEECC-ChHHHHHHHHHHH-CCCCEE-EEECCH--HHHHHH----HHCCCeEEEcCCCCH-HHHHh-cCcccc
Confidence 344567999998 9999999998874 456665 567543 122222 12344432 232 33321 112467
Q ss_pred cEEEEcCCchhH-HHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHH
Q 022250 108 AVVIDFTDASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (300)
Q Consensus 108 DVVIDfT~p~~~-~~~~~~al~~--G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~ 174 (300)
|++|-.++-+.. ...+..+.+. .++++.=. -++++.+.+ ++.|+-.++.|..-++-.+.+.
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~--~~~~~~~~l----~~~Gad~vv~p~~~~a~~i~~~ 546 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIARA--HYDDEVAYI----TERGANQVVMGEREIARTMLEL 546 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHH----HHcCCCEEEChHHHHHHHHHHH
Confidence 877645433322 2233333332 34455322 244454445 3456777887777666444433
No 337
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=92.36 E-value=1.5 Score=43.44 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=69.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh--hhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM--VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~--~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI 111 (300)
.-+|.|+|+ |.+|..+++.+. .+|+.=+-++|.... ..|.+. ++.. ...|-+-.....+.+. .-++||-+
T Consensus 20 ~s~VlliG~-gglGsEilKNLv-L~GIg~~tIvD~~~V~~sDL~~nFfl~~-~diGk~kA~~~~~~L~----eLNp~V~i 92 (425)
T cd01493 20 SAHVCLLNA-TATGTEILKNLV-LPGIGSFTIVDGSKVDEEDLGNNFFLDA-SSLGKSRAEATCELLQ----ELNPDVNG 92 (425)
T ss_pred hCeEEEEcC-cHHHHHHHHHHH-HcCCCeEEEECCCcCchhhccccccCCh-hhcCcHHHHHHHHHHH----HHCCCCEE
Confidence 368999998 899999999987 578766667775321 112111 0000 0111111111122232 24788877
Q ss_pred EcC--CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250 112 DFT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 112 DfT--~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S 166 (300)
++. .++...+..... =.+-.+||.|+ .+......|.++|.+.++|++++..++
T Consensus 93 ~~~~e~~~~ll~~~~~f-~~~fdiVI~t~-~~~~~~~~L~~~c~~~~iPlI~~~s~G 147 (425)
T cd01493 93 SAVEESPEALLDNDPSF-FSQFTVVIATN-LPESTLLRLADVLWSANIPLLYVRSYG 147 (425)
T ss_pred EEEecccchhhhhHHHH-hcCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 764 333322222211 23557888654 345566678899999999988766544
No 338
>PLN02214 cinnamoyl-CoA reductase
Probab=92.34 E-value=0.95 Score=42.94 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=28.2
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
++.+|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r 42 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLE-RGYTVKGTVR 42 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeC
Confidence 356899999999999999999875 5788887653
No 339
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=92.34 E-value=0.19 Score=49.60 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=43.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC---cceecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
.||.|+|+ |.||+.+++.+.. .+..-+-+++++. ..+..++ ..++ +..++++.+.+ .++|+||.
T Consensus 182 kkvlviGa-G~~a~~va~~L~~-~g~~~I~V~nRt~--~ra~~La---~~~~~~~~~~~~~l~~~l------~~aDiVI~ 248 (414)
T PRK13940 182 KNVLIIGA-GQTGELLFRHVTA-LAPKQIMLANRTI--EKAQKIT---SAFRNASAHYLSELPQLI------KKADIIIA 248 (414)
T ss_pred CEEEEEcC-cHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHH---HHhcCCeEecHHHHHHHh------ccCCEEEE
Confidence 68999997 9999999999875 4544455566543 2233333 1222 22246666777 47999998
Q ss_pred cCC
Q 022250 113 FTD 115 (300)
Q Consensus 113 fT~ 115 (300)
+|.
T Consensus 249 aT~ 251 (414)
T PRK13940 249 AVN 251 (414)
T ss_pred CcC
Confidence 874
No 340
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.32 E-value=0.61 Score=44.41 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=49.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc---ceec--CHHHHHhcccccCCccEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMS--DLTMVLGSISQSKARAVV 110 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~~--dl~~~l~~~~~~~~~DVV 110 (300)
-+|.|+|++|.+|...++.++. -+...++++.++. ... ++ .+.|. -.|. |+.+.+.+......+|+|
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~-~G~~~v~~~~s~~---k~~-~~---~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKA-LGATVVAVVSSSE---KLE-LL---KELGADHVINYREEDFVEQVRELTGGKGVDVV 215 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHH-cCCcEEEEecCHH---HHH-HH---HhcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence 4699999999999999997765 4545565555431 111 11 12221 1111 123322211111245666
Q ss_pred EEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250 111 IDFTDASTVYDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigTT 138 (300)
+|..-.+...+.+......|.=+.+|.+
T Consensus 216 ~D~vG~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 216 LDTVGGDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred EECCCHHHHHHHHHHhccCCEEEEEecC
Confidence 6666555555555544445555555554
No 341
>PRK06182 short chain dehydrogenase; Validated
Probab=92.32 E-value=1.9 Score=39.03 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=52.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT 114 (300)
.+|.|.|++|.+|+.+++.+.+ .+.++++. +++. ... +++.. .... +..|.+
T Consensus 4 k~vlItGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~l------------------~~~~~-----~~~~~~~~Dv~ 56 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAA-QGYTVYGA-ARRV--DKM------------------EDLAS-----LGVHPLSLDVT 56 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HHH------------------HHHHh-----CCCeEEEeeCC
Confidence 5799999999999999998875 58887764 3321 111 11111 1222 456888
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
.++.....+....+. ++++|+-..|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 57 DEASIKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 888887777766554 68888877664
No 342
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.28 E-value=0.56 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKA 58 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~ 58 (300)
+||+|+|++|++|+.++..+...
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~ 23 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASG 23 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhC
Confidence 48999999999999999988754
No 343
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.26 E-value=3.1 Score=40.78 Aligned_cols=117 Identities=19% Similarity=0.179 Sum_probs=62.7
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhcCcCCCCcceec--CHHHHHhcccccCCccEEE
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~---~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVI 111 (300)
||.|+|. |+.|..+++.+. ..++++.+ .|.... .+.. .+.. ...|+.++. + .+.+ .++|+||
T Consensus 1 ~~~~iG~-G~~G~a~a~~l~-~~G~~V~~-sD~~~~-~~~~~~~~~~~--~~~gi~~~~g~~-~~~~------~~~d~vv 67 (433)
T TIGR01087 1 KILILGL-GKTGRAVARFLH-KKGAEVTV-TDLKPN-EELEPSMGQLR--LNEGSVLHTGLH-LEDL------NNADLVV 67 (433)
T ss_pred CEEEEEe-CHhHHHHHHHHH-HCCCEEEE-EeCCCC-ccchhHHHHHh--hccCcEEEecCc-hHHh------ccCCEEE
Confidence 5899998 999999998776 56888664 674321 1111 1110 123665542 3 3334 3689887
Q ss_pred EcCC-chhHHHHHHHHHHcCCCEE--------------EeCCCCCH--HHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250 112 DFTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSI 167 (300)
Q Consensus 112 DfT~-p~~~~~~~~~al~~G~~vV--------------igTTG~~~--e~~~~L~~~a~~~~i~iv~a~N~Si 167 (300)
--+. |.. .+.+..|.+.|+|++ |+-||-+- --...|..+-+..+..++...|+..
T Consensus 68 ~sp~i~~~-~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~ 139 (433)
T TIGR01087 68 KSPGIPPD-HPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT 139 (433)
T ss_pred ECCCCCCC-CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCH
Confidence 4331 333 344556666666654 34444321 1122344444455555677778544
No 344
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.23 E-value=0.64 Score=44.22 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=25.2
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
||+|+|++|++|..++-.+....-..=+..+|.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~ 34 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIA 34 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 7999999899999999988765433323457754
No 345
>PRK08177 short chain dehydrogenase; Provisional
Probab=92.21 E-value=0.84 Score=40.11 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=50.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
.+|.|.|++|.+|+.+++.+.+ .+.+++.+ +++. .+..++ ++. . ...-..+|++.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~-~G~~V~~~-~r~~--~~~~~~---------------~~~-~-----~~~~~~~D~~d 56 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLE-RGWQVTAT-VRGP--QQDTAL---------------QAL-P-----GVHIEKLDMND 56 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHh-CCCEEEEE-eCCC--cchHHH---------------Hhc-c-----ccceEEcCCCC
Confidence 5699999999999999999885 47887654 4432 111111 010 0 00113457888
Q ss_pred chhHHHHHHHHHHcCCCEEEeCCCC
Q 022250 116 ASTVYDNVKQATAFGMRSVVYVPHI 140 (300)
Q Consensus 116 p~~~~~~~~~al~~G~~vVigTTG~ 140 (300)
++...+.+....+.++++|+=..|.
T Consensus 57 ~~~~~~~~~~~~~~~id~vi~~ag~ 81 (225)
T PRK08177 57 PASLDQLLQRLQGQRFDLLFVNAGI 81 (225)
T ss_pred HHHHHHHHHHhhcCCCCEEEEcCcc
Confidence 8777776666655578888866553
No 346
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.18 E-value=0.5 Score=45.89 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=31.4
Q ss_pred eeeEeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 23 RFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 23 ~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
+..++..-|+-...||.|+|+ |++|+..++.+.. -+.+ |-++|++
T Consensus 155 ~~~~~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~-lGa~-V~v~d~~ 199 (370)
T TIGR00518 155 RGVLLGGVPGVEPGDVTIIGG-GVVGTNAAKMANG-LGAT-VTILDIN 199 (370)
T ss_pred cceeecCCCCCCCceEEEEcC-CHHHHHHHHHHHH-CCCe-EEEEECC
Confidence 344555444333578999998 9999999998875 4677 4457754
No 347
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=92.11 E-value=0.87 Score=41.85 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=23.4
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCc-EEEEEEec
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (300)
|.|.|++|-+|+.+++.+.+. +. ++++ +++
T Consensus 1 ilItGatG~iG~~l~~~L~~~-g~~~v~~-~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNER-GITDILV-VDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHc-CCceEEE-Eec
Confidence 579999999999999999865 44 5554 453
No 348
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=92.03 E-value=0.69 Score=40.40 Aligned_cols=31 Identities=39% Similarity=0.434 Sum_probs=25.0
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
|.|+|++|-+|+.+++.+.+ .+.+++.....
T Consensus 1 IlI~GatG~iG~~l~~~l~~-~g~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLK-KGHEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTTEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHH-cCCcccccccc
Confidence 68999999999999999885 57776655443
No 349
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.01 E-value=2.3 Score=33.39 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=54.2
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEEEEc
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVIDf 113 (300)
|.|+|+ |++|+.+++.+.+ .+.+++. +|.+. +....+. +.++++. .+.+.+.. . .-.++|.+|-.
T Consensus 1 vvI~G~-g~~~~~i~~~L~~-~~~~vvv-id~d~--~~~~~~~----~~~~~~i~gd~~~~~~l~~-a-~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKE-GGIDVVV-IDRDP--ERVEELR----EEGVEVIYGDATDPEVLER-A-GIEKADAVVIL 69 (116)
T ss_dssp EEEES--SHHHHHHHHHHHH-TTSEEEE-EESSH--HHHHHHH----HTTSEEEES-TTSHHHHHH-T-TGGCESEEEEE
T ss_pred eEEEcC-CHHHHHHHHHHHh-CCCEEEE-EECCc--HHHHHHH----hcccccccccchhhhHHhh-c-CccccCEEEEc
Confidence 679998 9999999999987 5556664 55432 1111111 2233332 23322221 0 12467877766
Q ss_pred CCchh-HHHHHHHHHH-cC-CCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250 114 TDAST-VYDNVKQATA-FG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (300)
Q Consensus 114 T~p~~-~~~~~~~al~-~G-~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~ 163 (300)
|.-+. ....+..+.+ ++ ++++. .-.+++..+.+ ++.|+-.+++|
T Consensus 70 ~~~d~~n~~~~~~~r~~~~~~~ii~--~~~~~~~~~~l----~~~g~d~vi~P 116 (116)
T PF02254_consen 70 TDDDEENLLIALLARELNPDIRIIA--RVNDPENAELL----RQAGADHVISP 116 (116)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSEEEE--EESSHHHHHHH----HHTT-SEEEEH
T ss_pred cCCHHHHHHHHHHHHHHCCCCeEEE--EECCHHHHHHH----HHCCcCEEECc
Confidence 65443 3445555555 33 34443 23334443344 33445555544
No 350
>PLN02602 lactate dehydrogenase
Probab=91.97 E-value=0.59 Score=45.17 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=25.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
.||+|+|+ |++|..++-.+...+-..=+..+|.+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~ 71 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVN 71 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 69999997 99999999988765444334467753
No 351
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=91.85 E-value=0.86 Score=43.39 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=26.1
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
||.|+|+ |.+|..+++.+. ..++.=+-++|.
T Consensus 1 kVlIVGa-GGlG~EiaKnLa-l~Gvg~ItIvD~ 31 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLV-LTGFGEIHIIDL 31 (312)
T ss_pred CEEEECC-CHHHHHHHHHHH-HhcCCeEEEEcC
Confidence 6999998 999999999987 457777777884
No 352
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=91.83 E-value=1 Score=40.81 Aligned_cols=30 Identities=37% Similarity=0.445 Sum_probs=25.4
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus 1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTK-DGHEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHH-cCCEEEEEeC
Confidence 57999999999999999875 5789887654
No 353
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=91.74 E-value=1 Score=42.02 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=26.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (300)
|||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~ 30 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVVIL 30 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHH-CCCeEEEE
Confidence 5899999999999999998875 57888774
No 354
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.71 E-value=2.1 Score=42.09 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=65.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------CC------cchhhhhcCcCCCC-cceecCHHHHHhcc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VG------EDIGMVCDMEQPLE-IPVMSDLTMVLGSI 101 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------~g------~d~~~~~g~~~~~g-v~v~~dl~~~l~~~ 101 (300)
|||.|+|. |-+|-...-.+.+ -++++++ +|.+. .| +.+.+++--....| ...++|++++++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~-~GHeVv~-vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~-- 75 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAE-LGHEVVC-VDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK-- 75 (414)
T ss_pred CceEEECC-chHHHHHHHHHHH-cCCeEEE-EeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh--
Confidence 79999996 9999999887764 5788887 44210 01 11223331111122 566788888874
Q ss_pred cccCCccEEEEcC--Cch--h--HHHHHHHHHH------cCCCEEEeC-C---CCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250 102 SQSKARAVVIDFT--DAS--T--VYDNVKQATA------FGMRSVVYV-P---HIQLETVSALSAFCDKASMGCLIAPTL 165 (300)
Q Consensus 102 ~~~~~~DVVIDfT--~p~--~--~~~~~~~al~------~G~~vVigT-T---G~~~e~~~~L~~~a~~~~i~iv~a~N~ 165 (300)
+.|+++.++ ++. . -..+++.+++ .+.++|+.+ | |.+++-.+.+.+........++..|=|
T Consensus 76 ----~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 76 ----DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred ----cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence 789888775 222 1 1222222222 233666665 3 776654444444443323334444433
No 355
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.68 E-value=2.5 Score=43.70 Aligned_cols=123 Identities=11% Similarity=0.086 Sum_probs=68.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVV 110 (300)
..+|.|+|+ |++|+.+++.+.+ .+.+++ ++|.++ +.+..+ .+.|.+++ ++. +++++ ..-.++|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~-~g~~vv-vID~d~--~~v~~~----~~~g~~v~~GDat~~-~~L~~-agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMA-NKMRIT-VLERDI--SAVNLM----RKYGYKVYYGDATQL-ELLRA-AGAEKAEAI 468 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHh-CCCCEE-EEECCH--HHHHHH----HhCCCeEEEeeCCCH-HHHHh-cCCccCCEE
Confidence 468999998 9999999998774 566765 467543 222222 23455553 233 33321 112467887
Q ss_pred EEcCC-chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250 111 IDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (300)
Q Consensus 111 IDfT~-p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll 172 (300)
|-.+. ++.....+..+.+...++=|=...-++++.+.|.++ |+-.++-.+|--+-.+-
T Consensus 469 v~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~----Ga~~vv~e~~es~l~l~ 527 (601)
T PRK03659 469 VITCNEPEDTMKIVELCQQHFPHLHILARARGRVEAHELLQA----GVTQFSRETFSSALELG 527 (601)
T ss_pred EEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhC----CCCEEEccHHHHHHHHH
Confidence 76554 344455556666654332222234455666666544 45556666665555443
No 356
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.67 E-value=0.95 Score=46.03 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=43.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-.+|+|+|. |+||+.+++.+.. -++++++ +|+... .+.. ...++... ++++++. .+|+|+-..
T Consensus 140 gktvgIiG~-G~IG~~vA~~l~~-fG~~V~~-~d~~~~-~~~~------~~~g~~~~-~l~ell~------~aDiV~l~l 202 (526)
T PRK13581 140 GKTLGIIGL-GRIGSEVAKRAKA-FGMKVIA-YDPYIS-PERA------AQLGVELV-SLDELLA------RADFITLHT 202 (526)
T ss_pred CCEEEEECC-CHHHHHHHHHHHh-CCCEEEE-ECCCCC-hhHH------HhcCCEEE-cHHHHHh------hCCEEEEcc
Confidence 378999998 9999999998874 5888775 665321 1111 12344444 8999984 789888655
Q ss_pred C
Q 022250 115 D 115 (300)
Q Consensus 115 ~ 115 (300)
+
T Consensus 203 P 203 (526)
T PRK13581 203 P 203 (526)
T ss_pred C
Confidence 3
No 357
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.66 E-value=0.69 Score=44.14 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHh
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTK 57 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~ 57 (300)
+.||+|+|++|++|..++-.+..
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~ 24 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIAS 24 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHh
Confidence 47999999889999999987764
No 358
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=91.61 E-value=0.4 Score=46.36 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=90.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhc---CCcEEEEEEecCC--CCcchhhhhcCcC----CCC-cceec-----CHHHHHh
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHS--VGEDIGMVCDMEQ----PLE-IPVMS-----DLTMVLG 99 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~--~g~d~~~~~g~~~----~~g-v~v~~-----dl~~~l~ 99 (300)
..-+.|.||+|-.|+.+++.+... ++..+. +..++. .. +.-+.++... +.. +.+.| ++++..
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sla-vAGRn~~KL~-~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~ema- 81 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLA-VAGRNEKKLQ-EVLEKVGEKTGTDLSSSVILIADSANEASLDEMA- 81 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEE-EecCCHHHHH-HHHHHHhhccCCCcccceEEEecCCCHHHHHHHH-
Confidence 356899999999999999988653 344332 222221 10 1111111100 011 22222 366655
Q ss_pred cccccCCccEEEEcCCchhH--HHHHHHHHHcCCCEE--EeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC-----cHHHH
Q 022250 100 SISQSKARAVVIDFTDASTV--YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMGCLIAPTL-----SIGSI 170 (300)
Q Consensus 100 ~~~~~~~~DVVIDfT~p~~~--~~~~~~al~~G~~vV--igTTG~~~e~~~~L~~~a~~~~i~iv~a~N~-----SiGv~ 170 (300)
..+-|||.+--|--+ ...++.|+++|.+-| .|-|-|-+--..+-.+.|+++|+.||=+.-| -+||+
T Consensus 82 -----k~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDSIPaDlGv~ 156 (423)
T KOG2733|consen 82 -----KQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSACGFDSIPADLGVM 156 (423)
T ss_pred -----hhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEeecccCCCCccceee
Confidence 367889988866554 678899999999887 4444454433445678899999998877775 46765
Q ss_pred HHHHHHHHhccCCCCeEEEEc--c-CCCCCCCchHHH
Q 022250 171 LLQQAAISASFHYKNVEIVES--R-PNARDFPSPDAT 204 (300)
Q Consensus 171 ll~~~a~~~~~~~~dieIiE~--H-h~K~DaPSGTA~ 204 (300)
.+.+- + ..++.=+|. | |.| -|||+++
T Consensus 157 f~~k~---f---dg~ln~VEsfl~Lh~~--gp~G~sl 185 (423)
T KOG2733|consen 157 FLRKN---F---DGVLNHVESFLQLHSK--GPSGYSL 185 (423)
T ss_pred eehhh---c---cccHHHHHHHHhhhcc--CCccccc
Confidence 54321 1 123333565 2 345 6999766
No 359
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=91.59 E-value=0.97 Score=42.89 Aligned_cols=146 Identities=22% Similarity=0.250 Sum_probs=84.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-------cCHHHHHhcccccCCcc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-------SDLTMVLGSISQSKARA 108 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-------~dl~~~l~~~~~~~~~D 108 (300)
|+|.|.|..|-+|+..+..+.+ .+.+++ ++|.-..|... .+. ...++.+ .-++++++ +.++|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vv-V~DNL~~g~~~-~v~----~~~~~f~~gDi~D~~~L~~vf~----~~~id 69 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVV-VLDNLSNGHKI-ALL----KLQFKFYEGDLLDRALLTAVFE----ENKID 69 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHH-CCCeEE-EEecCCCCCHH-Hhh----hccCceEEeccccHHHHHHHHH----hcCCC
Confidence 5799999999999999998886 688876 57743222211 111 0001222 24566676 47899
Q ss_pred EEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCC-eEEEcCCCcHHHHHHHHHHHHhccCCCCeE
Q 022250 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM-GCLIAPTLSIGSILLQQAAISASFHYKNVE 187 (300)
Q Consensus 109 VVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i-~iv~a~N~SiGv~ll~~~a~~~~~~~~die 187 (300)
+||.|.--..+-|-+..=++.=-+=|.||- .|.+++++.++ .+|+|+. +..... -..+-
T Consensus 70 aViHFAa~~~VgESv~~Pl~Yy~NNv~gTl--------~Ll~am~~~gv~~~vFSSt-----------AavYG~-p~~~P 129 (329)
T COG1087 70 AVVHFAASISVGESVQNPLKYYDNNVVGTL--------NLIEAMLQTGVKKFIFSST-----------AAVYGE-PTTSP 129 (329)
T ss_pred EEEECccccccchhhhCHHHHHhhchHhHH--------HHHHHHHHhCCCEEEEecc-----------hhhcCC-CCCcc
Confidence 999998544443333322222222244541 24444555554 4444432 112211 13467
Q ss_pred EEEccCCCCCCCchHHHHHHHHHHh
Q 022250 188 IVESRPNARDFPSPDATQIANNLSN 212 (300)
Q Consensus 188 IiE~Hh~K~DaPSGTA~~l~~~i~~ 212 (300)
|.|.|....-.|=|..+.+.|.+.+
T Consensus 130 I~E~~~~~p~NPYG~sKlm~E~iL~ 154 (329)
T COG1087 130 ISETSPLAPINPYGRSKLMSEEILR 154 (329)
T ss_pred cCCCCCCCCCCcchhHHHHHHHHHH
Confidence 8899986677799999988887643
No 360
>PRK06180 short chain dehydrogenase; Provisional
Probab=91.56 E-value=1.3 Score=40.36 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=51.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf 113 (300)
+.+|.|.|++|.+|+.+++.+.+ .+.+++++ +++. .+...+. +... .... +..|.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~~~~l~---------------~~~~-----~~~~~~~~D~ 59 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALA-AGHRVVGT-VRSE--AARADFE---------------ALHP-----DRALARLLDV 59 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHh-CcCEEEEE-eCCH--HHHHHHH---------------hhcC-----CCeeEEEccC
Confidence 45799999999999999999875 58887764 4331 1111110 0000 1122 35588
Q ss_pred CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 114 T~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
+.++...+.+..+.+. ++++|+=..|.
T Consensus 60 ~d~~~~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 60 TDFDAIDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 8888877777666553 57788766553
No 361
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=91.55 E-value=0.62 Score=44.45 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=42.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-.+|+|+|. |++|+.+++.+...=+++++ ++|+... .+.. ...++. +.+++++++ .+|+|+-..
T Consensus 145 gktvGIiG~-G~IG~~va~~l~~~fgm~V~-~~~~~~~-~~~~------~~~~~~-~~~l~ell~------~sDvv~lh~ 208 (323)
T PRK15409 145 HKTLGIVGM-GRIGMALAQRAHFGFNMPIL-YNARRHH-KEAE------ERFNAR-YCDLDTLLQ------ESDFVCIIL 208 (323)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHhcCCCEEE-EECCCCc-hhhH------HhcCcE-ecCHHHHHH------hCCEEEEeC
Confidence 478999998 99999999987523478877 4554321 1111 123333 468999995 789988654
No 362
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.53 E-value=0.95 Score=47.66 Aligned_cols=33 Identities=24% Similarity=0.191 Sum_probs=26.3
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
..||+|+|+ |-||+.|+..++...+++++ .+|.
T Consensus 304 i~~v~ViGa-G~mG~~iA~~~a~~~G~~V~-l~d~ 336 (699)
T TIGR02440 304 IKKVGILGG-GLMGGGIASVTATKAGIPVR-IKDI 336 (699)
T ss_pred ccEEEEECC-cHHHHHHHHHHHHHcCCeEE-EEeC
Confidence 468999998 99999999877655678765 3664
No 363
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=91.49 E-value=2.1 Score=37.34 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=26.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
.+|.|.|++|.+|+.+++.+.+ .+.+++ +++++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~-~g~~v~-~~~r~ 38 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAA-DGAKVV-IYDSN 38 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-CCCEEE-EEeCC
Confidence 6899999999999999999885 477754 45443
No 364
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.47 E-value=1.1 Score=42.38 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=25.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
|||+|+|+ |.+|..++..+....-..-+.++|.+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 58999998 99999999988765433445578864
No 365
>PRK06487 glycerate dehydrogenase; Provisional
Probab=91.36 E-value=0.67 Score=44.03 Aligned_cols=59 Identities=15% Similarity=0.005 Sum_probs=41.3
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-.+|+|+|+ |++|+.+++.+.. =++++++ +|+.. .. . .. -+.++++++. .+|+|+...
T Consensus 148 gktvgIiG~-G~IG~~vA~~l~~-fgm~V~~-~~~~~--~~-~---------~~-~~~~l~ell~------~sDiv~l~l 205 (317)
T PRK06487 148 GKTLGLLGH-GELGGAVARLAEA-FGMRVLI-GQLPG--RP-A---------RP-DRLPLDELLP------QVDALTLHC 205 (317)
T ss_pred CCEEEEECC-CHHHHHHHHHHhh-CCCEEEE-ECCCC--Cc-c---------cc-cccCHHHHHH------hCCEEEECC
Confidence 368999998 9999999998764 4888875 45431 11 0 01 1347999995 789998655
Q ss_pred C
Q 022250 115 D 115 (300)
Q Consensus 115 ~ 115 (300)
+
T Consensus 206 P 206 (317)
T PRK06487 206 P 206 (317)
T ss_pred C
Confidence 3
No 366
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=91.33 E-value=2.3 Score=33.75 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=45.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
|||.|+|. |.=-.+++..+.+++..+=+-+.-- +.|.. . + . . .++. .
T Consensus 1 MkVLviGs-GgREHAia~~l~~s~~v~~v~~aPG-N~G~~--------------------~-~-------~-~-~~~~-~ 47 (100)
T PF02844_consen 1 MKVLVIGS-GGREHAIAWKLSQSPSVEEVYVAPG-NPGTA--------------------E-L-------G-K-NVPI-D 47 (100)
T ss_dssp EEEEEEES-SHHHHHHHHHHTTCTTEEEEEEEE---TTGG--------------------G-T-------S-E-EE-S--
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCCCEEEEeCC-CHHHH--------------------h-h-------c-e-ecCC-C
Confidence 79999996 7444556677777777643333321 11100 0 0 0 0 1112 4
Q ss_pred chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250 116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (300)
Q Consensus 116 p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv 160 (300)
+....+.+.+|.++++.+|+--| ..--.+=|.+..++.|++++
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGP--E~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGP--EAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESS--HHHHHTTHHHHHHHTT-CEE
T ss_pred CCCHHHHHHHHHHcCCCEEEECC--hHHHHHHHHHHHHHCCCcEE
Confidence 44556666777788888775332 11122335666666777643
No 367
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=91.32 E-value=1.3 Score=42.11 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=23.9
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
||.|+|+ |..|..+++.+.. .++.=+-++|
T Consensus 1 kVLIvGa-GGLGs~vA~~La~-aGVg~ItlvD 30 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLLG-WGVRHITFVD 30 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEC
Confidence 6999999 9999999999874 4655455566
No 368
>PLN02494 adenosylhomocysteinase
Probab=91.31 E-value=1.3 Score=44.51 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=54.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
--+|+|+|+ |.+|+.+++.+.. -+++++. ++.+.. ...+ + ...|..+. ++++++. .+|++|+.|
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka-~Ga~VIV-~e~dp~--r~~e-A---~~~G~~vv-~leEal~------~ADVVI~tT 317 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKA-AGARVIV-TEIDPI--CALQ-A---LMEGYQVL-TLEDVVS------EADIFVTTT 317 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCch--hhHH-H---HhcCCeec-cHHHHHh------hCCEEEECC
Confidence 368999998 9999999998874 4787554 654321 1011 1 11233322 5778774 689999866
Q ss_pred CchhH-HHHHHHHHHcCCCEEEeCCCC-C-HHHHHHHHHH
Q 022250 115 DASTV-YDNVKQATAFGMRSVVYVPHI-Q-LETVSALSAF 151 (300)
Q Consensus 115 ~p~~~-~~~~~~al~~G~~vVigTTG~-~-~e~~~~L~~~ 151 (300)
..... .......++.|--++ ..|. . +-+.+.|.++
T Consensus 318 Gt~~vI~~e~L~~MK~GAiLi--NvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 318 GNKDIIMVDHMRKMKNNAIVC--NIGHFDNEIDMLGLETY 355 (477)
T ss_pred CCccchHHHHHhcCCCCCEEE--EcCCCCCccCHHHHhhc
Confidence 54432 233333444443333 2332 2 2234555555
No 369
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=91.25 E-value=2.2 Score=41.03 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=61.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
--+|+|+|. |++|+.+++.+... +..+. ...+.. ..+... +++.. +.|+++.+. ++|++|-.
T Consensus 162 gK~vgilG~-G~IG~~ia~rL~~F-g~~i~-y~~r~~~~~~~~~-------~~~~~-~~d~~~~~~------~sD~ivv~ 224 (336)
T KOG0069|consen 162 GKTVGILGL-GRIGKAIAKRLKPF-GCVIL-YHSRTQLPPEEAY-------EYYAE-FVDIEELLA------NSDVIVVN 224 (336)
T ss_pred CCEEEEecC-cHHHHHHHHhhhhc-cceee-eecccCCchhhHH-------Hhccc-ccCHHHHHh------hCCEEEEe
Confidence 378999998 99999999998763 34333 222211 111111 11111 458889884 78988876
Q ss_pred CC-chhH--HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCC
Q 022250 114 TD-ASTV--YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASM 157 (300)
Q Consensus 114 T~-p~~~--~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i 157 (300)
.+ .+.+ .-|-+.+...+.-+|+=.+ |--- ..+.+.++.++..+
T Consensus 225 ~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~ii-de~~l~eaL~sG~i 272 (336)
T KOG0069|consen 225 CPLTKETRHLINKKFIEKMKDGAVLVNTARGAII-DEEALVEALKSGKI 272 (336)
T ss_pred cCCCHHHHHHhhHHHHHhcCCCeEEEeccccccc-cHHHHHHHHhcCCc
Confidence 53 2222 4455666677777776666 3111 12356777766443
No 370
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.16 E-value=2.9 Score=43.47 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=66.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVV 110 (300)
.-+|.|+|+ |++|+.+++.+.+ .+.+++ ++|.+. +.+..+ .+.|.+++ ++.+ ++.+ ..-.++|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~-~g~~vv-vID~d~--~~v~~~----~~~g~~v~~GDat~~~-~L~~-agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLS-SGVKMT-VLDHDP--DHIETL----RKFGMKVFYGDATRMD-LLES-AGAAKAEVL 468 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHh-CCCCEE-EEECCH--HHHHHH----HhcCCeEEEEeCCCHH-HHHh-cCCCcCCEE
Confidence 468999998 9999999998874 466665 467543 122222 23455554 2433 3321 012467877
Q ss_pred EEcC-CchhHHHHHHHHHHcCC--CEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250 111 IDFT-DASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (300)
Q Consensus 111 IDfT-~p~~~~~~~~~al~~G~--~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv 169 (300)
|-.+ .++.....+..+.++.. ++++ -.-++++.++|.++ |+-.++-..+.-+.
T Consensus 469 vv~~~d~~~n~~i~~~ar~~~p~~~iia--Ra~d~~~~~~L~~~----Gad~v~~e~~e~sl 524 (621)
T PRK03562 469 INAIDDPQTSLQLVELVKEHFPHLQIIA--RARDVDHYIRLRQA----GVEKPERETFEGAL 524 (621)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHC----CCCEEehhhHhHHH
Confidence 7665 44555666677766643 4443 23445566666554 33345444444433
No 371
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=91.02 E-value=0.45 Score=45.81 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=61.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC----------------CCc----chhhhh-cCcCCCCccee---
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGE----DIGMVC-DMEQPLEIPVM--- 91 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~----d~~~~~-g~~~~~gv~v~--- 91 (300)
-.|.|+|| |+.|.-.+..+.. .++-=.|++|.+. .|+ .+..++ .+.+...|..|
T Consensus 67 s~VLVVGa-GGLGcPa~~YLaa-aGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~ 144 (427)
T KOG2017|consen 67 SSVLVVGA-GGLGCPAAQYLAA-AGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEF 144 (427)
T ss_pred ccEEEEcc-CCCCCHHHHHHHH-cCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhh
Confidence 56999999 9999999998774 5666677777321 111 111111 11111222222
Q ss_pred ---cCHHHHHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-CC
Q 022250 92 ---SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI 140 (300)
Q Consensus 92 ---~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G~ 140 (300)
++..+++ ...|||.|+|..-.+ +-.-..|.-.|+|+|+|+- +|
T Consensus 145 L~~sNa~~Ii------~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~ 192 (427)
T KOG2017|consen 145 LSSSNAFDII------KQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRW 192 (427)
T ss_pred ccchhHHHHh------hccceEEEcCCCccchhhhhhHHHHcCCcccccccccc
Confidence 3555666 479999999954444 5556789999999999975 44
No 372
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=90.96 E-value=1.1 Score=40.17 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=51.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT 114 (300)
|+|.|.|++|.+|+.+++.+.+ .+.+++. ++++. ....+. .+++-+ .... -+..|.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~--------------~~~l~~----~~~~~~~~~Dv~ 58 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLK-KGARVVI-SSRNE--ENLEKA--------------LKELKE----YGEVYAVKADLS 58 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHH-cCCEEEE-EeCCH--HHHHHH--------------HHHHHh----cCCceEEEcCCC
Confidence 5899999999999999999875 5777654 34432 111110 011110 0112 2456788
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
.++...+.+..+.+. ++++|+-..|.
T Consensus 59 d~~~~~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 59 DKDDLKNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 888887777766553 58888876664
No 373
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.92 E-value=7.9 Score=38.16 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=63.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCC-CCcceec--CHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMS--DLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v~~--dl~~~l~~~~~~~~~DVVID 112 (300)
=-|+|+|. |+.|..+++.+. ..++++++ .|..........+. .. .|++++. .-.+.+ .++|+||-
T Consensus 7 ~~~~v~G~-G~sG~s~a~~L~-~~G~~v~~-~D~~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~------~~~d~vV~ 74 (448)
T PRK03803 7 GLHIVVGL-GKTGLSVVRFLA-RQGIPFAV-MDSREQPPGLDTLA---REFPDVELRCGGFDCELL------VQASEIII 74 (448)
T ss_pred CeEEEEee-cHhHHHHHHHHH-hCCCeEEE-EeCCCCchhHHHHH---hhcCCcEEEeCCCChHHh------cCCCEEEE
Confidence 45999998 999999888766 56887664 77432111111221 11 3666642 122334 36898874
Q ss_pred cCC-chhHHHHHHHHHHcCCCEE--------------EeCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcHH
Q 022250 113 FTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIG 168 (300)
Q Consensus 113 fT~-p~~~~~~~~~al~~G~~vV--------------igTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~SiG 168 (300)
-+. |.. .+.+..|.+.|+|++ |+-||-+-. -...|..+-++.+..++...|+...
T Consensus 75 sp~i~~~-~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p 146 (448)
T PRK03803 75 SPGLALD-TPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP 146 (448)
T ss_pred CCCCCCC-CHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence 331 332 334555556666554 333442211 1223444445556677888885444
No 374
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=90.91 E-value=1 Score=42.94 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=21.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKAR 59 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~ 59 (300)
++||+|+|++|.+|+.++-.+...+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC
Confidence 4899999988999999998877543
No 375
>PRK09135 pteridine reductase; Provisional
Probab=90.91 E-value=10 Score=33.14 Aligned_cols=172 Identities=17% Similarity=0.128 Sum_probs=89.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT 114 (300)
.+|.|.|++|.+|+.+++.+.+ .+.+++++..+.. .....+. ..+.+.-. .... +.+|.+
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~-~g~~v~~~~r~~~--~~~~~~~-----------~~~~~~~~-----~~~~~~~~Dl~ 67 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHA-AGYRVAIHYHRSA--AEADALA-----------AELNALRP-----GSAAALQADLL 67 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHHH-----------HHHHhhcC-----CceEEEEcCCC
Confidence 5799999999999999999885 5888876543221 0001000 00000000 0111 345778
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCCCCH------HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCe
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV 186 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG~~~------e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~di 186 (300)
.++.....+..+.+. ++.+|+-..|... ...+.+++ .+..|+.--+++++.+...+.+...-+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~---------~~~~n~~g~~~l~~~~~~~~~~~~~~~ 138 (249)
T PRK09135 68 DPDALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDD---------LFASNLKAPFFLSQAAAPQLRKQRGAI 138 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHH---------HHHHhchhHHHHHHHHHHHHhhCCeEE
Confidence 777776666655443 5678887776311 01112222 333566655666665554443221111
Q ss_pred E-EEEccC---CCCCCCchHHHHHHHHHHh-cCCccccCccccccccccccccCCCeeEEEEEcCCCCeeE
Q 022250 187 E-IVESRP---NARDFPSPDATQIANNLSN-LGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSST 252 (300)
Q Consensus 187 e-IiE~Hh---~K~DaPSGTA~~l~~~i~~-~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H 252 (300)
- +...+. .+...|-|.++..++.+.+ +...+ + ..+.+..+|.|.+.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~Y~~sK~~~~~~~~~l~~~~----------------~-~~i~~~~v~pg~~~~~~ 192 (249)
T PRK09135 139 VNITDIHAERPLKGYPVYCAAKAALEMLTRSLALEL----------------A-PEVRVNAVAPGAILWPE 192 (249)
T ss_pred EEEeChhhcCCCCCchhHHHHHHHHHHHHHHHHHHH----------------C-CCCeEEEEEeccccCcc
Confidence 1 112222 2334456777766665443 11100 1 24778888888876654
No 376
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=90.90 E-value=1.3 Score=43.52 Aligned_cols=135 Identities=20% Similarity=0.243 Sum_probs=76.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCc-------CCCCcceecCHHHHHhccc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSIS 102 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~-------~~~gv~v~~dl~~~l~~~~ 102 (300)
-.||+|-|. |+.|+..++.+.+. +.+||++-|+. ..|-|...+.... ...+....++ ++++.
T Consensus 207 G~rVaVQG~-GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~--- 280 (411)
T COG0334 207 GARVAVQGF-GNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLE--- 280 (411)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccc---
Confidence 479999997 99999999988765 99999988852 3455543332111 0112222222 66665
Q ss_pred ccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH---HHHH-HHHH
Q 022250 103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GSIL-LQQA 175 (300)
Q Consensus 103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si---Gv~l-l~~~ 175 (300)
.++|+++=+...... .+++..... .+|.|-. + .+++..+.+. ++ .|++.|-+-. ||.. -.+.
T Consensus 281 --~~cDIl~PcA~~n~I~~~na~~l~a---k~V~EgAN~P~t~eA~~i~~----er--GIl~~PD~laNAGGV~vS~~E~ 349 (411)
T COG0334 281 --VDCDILIPCALENVITEDNADQLKA---KIVVEGANGPTTPEADEILL----ER--GILVVPDILANAGGVIVSYLEW 349 (411)
T ss_pred --ccCcEEcccccccccchhhHHHhhh---cEEEeccCCCCCHHHHHHHH----HC--CCEEcChhhccCcCeeeehHHH
Confidence 689999866544443 444443333 3777755 4 4443323332 43 4677776532 2211 1344
Q ss_pred HHHhccCCCCe
Q 022250 176 AISASFHYKNV 186 (300)
Q Consensus 176 a~~~~~~~~di 186 (300)
++....++|+-
T Consensus 350 ~qn~~~~~wt~ 360 (411)
T COG0334 350 VQNAQGLYWTE 360 (411)
T ss_pred HhhcccCccCH
Confidence 54444445543
No 377
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=90.84 E-value=0.76 Score=42.07 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=36.7
Q ss_pred EEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 40 V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
|.|++|-+|+.+++.+.+. +.+++.+..... ..+.-.++++++++. .++|+||.+.
T Consensus 2 ItGa~GfiG~~l~~~L~~~-g~~v~~~~~~~~--------------~Dl~~~~~l~~~~~~----~~~d~Vih~A 57 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEAL-GFTNLVLRTHKE--------------LDLTRQADVEAFFAK----EKPTYVILAA 57 (306)
T ss_pred cccCCCcccHHHHHHHHhC-CCcEEEeecccc--------------CCCCCHHHHHHHHhc----cCCCEEEEee
Confidence 7899999999999998764 566554433211 112223456666652 4689999985
No 378
>PRK06199 ornithine cyclodeaminase; Validated
Probab=90.76 E-value=0.55 Score=45.84 Aligned_cols=93 Identities=13% Similarity=0.183 Sum_probs=59.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhc-CcCCC----CcceecCHHHHHhcccccCCccE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCD-MEQPL----EIPVMSDLTMVLGSISQSKARAV 109 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~----gv~v~~dl~~~l~~~~~~~~~DV 109 (300)
-+++|+|+ |.+++.+++++.. .|+++=+-+++++. ..+..++. +...+ .+.+.+|.++++. ++||
T Consensus 156 ~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~--~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~------~ADI 226 (379)
T PRK06199 156 KVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQ--KSLDSFATWVAETYPQITNVEVVDSIEEVVR------GSDI 226 (379)
T ss_pred CEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCCceEEEeCCHHHHHc------CCCE
Confidence 57999997 9999999999876 45688888888753 22222210 00122 2556789999984 7999
Q ss_pred EEEcCCchh----HHHHH-HHHHHcCCCEE-EeC
Q 022250 110 VIDFTDAST----VYDNV-KQATAFGMRSV-VYV 137 (300)
Q Consensus 110 VIDfT~p~~----~~~~~-~~al~~G~~vV-igT 137 (300)
|+=+|+... ....+ ...++.|.+|. +|+
T Consensus 227 VvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 227 VTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAA 260 (379)
T ss_pred EEEccCCCCCCCCcCcEecHHHcCCCcEEecCCc
Confidence 986664211 11222 34567888876 443
No 379
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=90.74 E-value=1.2 Score=42.34 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=41.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
.+|+|+|. |+||+.+++.+.. -++++.+ +|+.. +... +. . .+.-..++++++. .+|+|+...
T Consensus 137 ~tvgIvG~-G~IG~~vA~~l~a-fG~~V~~-~~~~~--~~~~---~~-~--~~~~~~~l~e~l~------~aDvvv~~l 198 (312)
T PRK15469 137 FTIGILGA-GVLGSKVAQSLQT-WGFPLRC-WSRSR--KSWP---GV-Q--SFAGREELSAFLS------QTRVLINLL 198 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCC--CCCC---Cc-e--eecccccHHHHHh------cCCEEEECC
Confidence 68999997 9999999998874 5888875 56432 1100 00 0 0112358899984 789998554
No 380
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.73 E-value=2.2 Score=37.42 Aligned_cols=86 Identities=23% Similarity=0.209 Sum_probs=52.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf 113 (300)
+.+|.|+|++|.+|+.+++.+.+ .+++++..++++. .....+. +.+.. ....+. +..|+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~-~g~~v~~~~~r~~--~~~~~~~---------------~~~~~--~~~~~~~~~~D~ 64 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAK-EGAKVVIAYDINE--EAAQELL---------------EEIKE--EGGDAIAVKADV 64 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHHH---------------HHHHh--cCCeEEEEECCC
Confidence 46899999999999999998874 5788876545432 1111110 11110 001222 34578
Q ss_pred CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 114 T~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
+.++.+.+.+....+. ++++|+-..|.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 65 SSEEDVENLVEQIVEKFGKIDILVNNAGI 93 (247)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 8888777766655443 68888877654
No 381
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.68 E-value=1.6 Score=39.50 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=50.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcE--EEEEEecCC---CCcc------hhhhhcCcCCCC-cceecCHHHHHhcccc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSHS---VGED------IGMVCDMEQPLE-IPVMSDLTMVLGSISQ 103 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e--Lvg~vd~~~---~g~d------~~~~~g~~~~~g-v~v~~dl~~~l~~~~~ 103 (300)
.||.|+|+ |.+|+.+++.+.. .++. =+.++|++. ..+. ..+++ .+.+ -....++.+.+.
T Consensus 26 ~rvlvlGA-GgAg~aiA~~L~~-~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~~~~~l~~~l~---- 96 (226)
T cd05311 26 VKIVINGA-GAAGIAIARLLLA-AGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEKTGGTLKEALK---- 96 (226)
T ss_pred CEEEEECc-hHHHHHHHHHHHH-cCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCcccCCHHHHHh----
Confidence 58999998 9999999999875 4665 566788651 0110 01122 1111 011136766663
Q ss_pred cCCccEEEEcCCchhH-HHHHHHHHHcCCCEEE
Q 022250 104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVV 135 (300)
Q Consensus 104 ~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVi 135 (300)
++|++|..|++-.. .+.++... ..|+|.
T Consensus 97 --~~dvlIgaT~~G~~~~~~l~~m~--~~~ivf 125 (226)
T cd05311 97 --GADVFIGVSRPGVVKKEMIKKMA--KDPIVF 125 (226)
T ss_pred --cCCEEEeCCCCCCCCHHHHHhhC--CCCEEE
Confidence 68999998864433 23444332 334444
No 382
>PRK08267 short chain dehydrogenase; Provisional
Probab=90.61 E-value=1.7 Score=38.83 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=52.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf 113 (300)
|.++.|+|++|.+|+.+++.+.+ .+.+++. ++++. ....++ .+.+. ..... +.+|+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~----~~~~~~~~~D~ 57 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAA-EGWRVGA-YDINE--AGLAAL---------------AAELG----AGNAWTGALDV 57 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHH-CCCeEEE-EeCCH--HHHHHH---------------HHHhc----CCceEEEEecC
Confidence 35699999999999999999875 5777665 44432 111111 01110 01222 46788
Q ss_pred CCchhHHHHHHHHHHc---CCCEEEeCCCC
Q 022250 114 TDASTVYDNVKQATAF---GMRSVVYVPHI 140 (300)
Q Consensus 114 T~p~~~~~~~~~al~~---G~~vVigTTG~ 140 (300)
+.++.+.+.+..+.+. .+++|+-..|.
T Consensus 58 ~~~~~v~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 58 TDRAAWDAALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 9888887777766553 67888877653
No 383
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=90.55 E-value=1.7 Score=41.08 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=26.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (300)
+||.|.|++|-+|+.+++.+.+ .+.++++.
T Consensus 5 k~ilItGatG~IG~~l~~~L~~-~G~~V~~~ 34 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLE-LGAEVYGY 34 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHH-CCCEEEEE
Confidence 6899999999999999999885 57887764
No 384
>PRK08017 oxidoreductase; Provisional
Probab=90.55 E-value=4.3 Score=35.97 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=25.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (300)
+.+|.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~-~g~~v~~~ 32 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKR-RGYRVLAA 32 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHH-CCCEEEEE
Confidence 34699999999999999999875 47787654
No 385
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.54 E-value=4.2 Score=40.65 Aligned_cols=140 Identities=21% Similarity=0.167 Sum_probs=77.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec--CHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVID 112 (300)
++||+|+|. |+-|...++.+.+ .+.++. +.|....-........ ...++.+.. ...+-+ ..+|+||
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~-~G~~v~-v~D~~~~~~~~~~~~~--~~~~i~~~~g~~~~~~~------~~~d~vV- 74 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLK-LGAEVT-VSDDRPAPEGLAAQPL--LLEGIEVELGSHDDEDL------AEFDLVV- 74 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHH-CCCeEE-EEcCCCCccchhhhhh--hccCceeecCccchhcc------ccCCEEE-
Confidence 589999997 9999999998875 466655 4663221110000000 123444331 111222 4689887
Q ss_pred cCC--chhHHHHHHHHHHcCCCEE---------------EeCCCCCH--HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHH
Q 022250 113 FTD--ASTVYDNVKQATAFGMRSV---------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (300)
Q Consensus 113 fT~--p~~~~~~~~~al~~G~~vV---------------igTTG~~~--e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~ 173 (300)
.|+ |..+ +.+..|.+.|++++ |+-||-+- ---..|....++.|.+..++.|...++ +.
T Consensus 75 ~SPGi~~~~-p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~--l~ 151 (448)
T COG0771 75 KSPGIPPTH-PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA--LE 151 (448)
T ss_pred ECCCCCCCC-HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH--HH
Confidence 553 2222 24555555555443 33344321 133567777888889999999988884 22
Q ss_pred HHHHHhccCCCCeEEEEcc
Q 022250 174 QAAISASFHYKNVEIVESR 192 (300)
Q Consensus 174 ~~a~~~~~~~~dieIiE~H 192 (300)
-+.+ . ..+|+-++|.-
T Consensus 152 ~~~~-~--~~~d~~VlElS 167 (448)
T COG0771 152 LLEQ-A--EPADVYVLELS 167 (448)
T ss_pred hhcc-c--CCCCEEEEEcc
Confidence 2221 1 23566677753
No 386
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.49 E-value=0.43 Score=44.60 Aligned_cols=124 Identities=20% Similarity=0.156 Sum_probs=65.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCCC---CcceecCHHHHHhcccccCCccEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPL---EIPVMSDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~---gv~v~~dl~~~l~~~~~~~~~DVVI 111 (300)
.||.|+|+ |.+|++++..+.. .++.=+-++|++. ..+..++. +...+ .+..++++.+.+ .++|+||
T Consensus 128 k~vlIlGa-GGaaraia~aL~~-~G~~~I~I~nR~~--~ka~~la~~l~~~~~~~~~~~~~~~~~~~------~~aDiVI 197 (284)
T PRK12549 128 ERVVQLGA-GGAGAAVAHALLT-LGVERLTIFDVDP--ARAAALADELNARFPAARATAGSDLAAAL------AAADGLV 197 (284)
T ss_pred CEEEEECC-cHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHHHHHHhhCCCeEEEeccchHhhh------CCCCEEE
Confidence 58999998 9999999998875 4554466777643 12222210 00011 111234555555 3789999
Q ss_pred EcCCchhH----HHHHHHHHHcCCCEE--EeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250 112 DFTDASTV----YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179 (300)
Q Consensus 112 DfT~p~~~----~~~~~~al~~G~~vV--igTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~ 179 (300)
..|+.-.. ...-...+..+.-++ +-+|--| .+.+.|+++|.+++- .+++ |+.|.+.++
T Consensus 198 naTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T-----~ll~~A~~~G~~~~~----G~~M-L~~Qa~~~f 261 (284)
T PRK12549 198 HATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLET-----ELLRAARALGCRTLD----GGGM-AVFQAVDAF 261 (284)
T ss_pred ECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCC-----HHHHHHHHCCCeEec----CHHH-HHHHHHHHH
Confidence 98853210 000112233332221 2223223 477778888887664 3443 345555554
No 387
>PRK05442 malate dehydrogenase; Provisional
Probab=90.48 E-value=1.1 Score=42.89 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=19.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHh
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTK 57 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~ 57 (300)
|.||+|+|++|++|..++-.+..
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~ 26 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIAS 26 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHh
Confidence 58999999889999999887664
No 388
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.48 E-value=2.2 Score=39.66 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=25.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
-+|.|+|++|.+|+..++.+. ..+.++++...
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk-~~G~~Vi~~~~ 171 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAK-LKGCKVVGAAG 171 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHH-HcCCEEEEEeC
Confidence 369999988999999998765 56888776554
No 389
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=90.47 E-value=1.1 Score=46.58 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=25.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
..||.|+|| |..|..+++.+.. -++.=+.++|
T Consensus 338 ~~kVLIvGa-GGLGs~VA~~La~-~GVg~ItlVD 369 (664)
T TIGR01381 338 QLKVLLLGA-GTLGCNVARCLIG-WGVRHITFVD 369 (664)
T ss_pred cCeEEEECC-cHHHHHHHHHHHH-cCCCeEEEEc
Confidence 368999999 9999999998875 4655455566
No 390
>PRK06823 ornithine cyclodeaminase; Validated
Probab=90.45 E-value=0.62 Score=44.28 Aligned_cols=91 Identities=12% Similarity=0.073 Sum_probs=60.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
-+++|+|+ |..++.+++++..-..++=+-+++++. ..+..++......+ +.+.+|.++++. ++|+|+-.
T Consensus 129 ~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIV~ta 199 (315)
T PRK06823 129 SAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSE--TALEEYRQYAQALGFAVNTTLDAAEVAH------AANLIVTT 199 (315)
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhcCCcEEEECCHHHHhc------CCCEEEEe
Confidence 57999997 999999999998877888888888653 22222221101223 444688999884 89999966
Q ss_pred CCc-hhHHHHHHHHHHcCCCEE-EeC
Q 022250 114 TDA-STVYDNVKQATAFGMRSV-VYV 137 (300)
Q Consensus 114 T~p-~~~~~~~~~al~~G~~vV-igT 137 (300)
|+. +.+.+ ...++.|.+|. ||+
T Consensus 200 T~s~~P~~~--~~~l~~G~hi~~iGs 223 (315)
T PRK06823 200 TPSREPLLQ--AEDIQPGTHITAVGA 223 (315)
T ss_pred cCCCCceeC--HHHcCCCcEEEecCC
Confidence 632 22221 23567888877 554
No 391
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.43 E-value=2.7 Score=37.93 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=51.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDf 113 (300)
..+|.|.|++|++|+.+++.+.+..+..++.. +++.. ....++. +++... ...+. -+-.|.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~-~r~~~-~~~~~~~--------------~~l~~~--~~~~v~~~~~D~ 69 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLA-ALPDD-PRRDAAV--------------AQMKAA--GASSVEVIDFDA 69 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEE-eCCcc-hhHHHHH--------------HHHHhc--CCCceEEEEecC
Confidence 35799999999999999999887656777754 43320 0011110 111110 00011 134677
Q ss_pred CCchhHHHHHHHHHHc-CCCEEEeCCCC
Q 022250 114 TDASTVYDNVKQATAF-GMRSVVYVPHI 140 (300)
Q Consensus 114 T~p~~~~~~~~~al~~-G~~vVigTTG~ 140 (300)
+.++...+.+..+.+. ++++++-..|.
T Consensus 70 ~~~~~~~~~~~~~~~~g~id~li~~ag~ 97 (253)
T PRK07904 70 LDTDSHPKVIDAAFAGGDVDVAIVAFGL 97 (253)
T ss_pred CChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence 8888777777766653 58877755553
No 392
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=90.35 E-value=1.6 Score=43.83 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=40.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-.+|+|+|+ |++|+.+++.+.. -+++++ +++.+.. ..... ...|+. +.+++++++ .+|+||..+
T Consensus 254 GKtVgVIG~-G~IGr~vA~rL~a-~Ga~Vi-V~e~dp~--~a~~A----~~~G~~-~~~leell~------~ADIVI~at 317 (476)
T PTZ00075 254 GKTVVVCGY-GDVGKGCAQALRG-FGARVV-VTEIDPI--CALQA----AMEGYQ-VVTLEDVVE------TADIFVTAT 317 (476)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeCCch--hHHHH----HhcCce-eccHHHHHh------cCCEEEECC
Confidence 368999998 9999999998874 577754 4554321 11010 012332 236778774 689888653
No 393
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.35 E-value=1.2 Score=44.35 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=72.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCc--ch-hhhhcCcCCCCccee--cCHHHHHhcccccCCccEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DI-GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~-~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVV 110 (300)
.||+|+|. |+.|+.+++.+. ..++++.+ .|...... +. ..+ .+.|+.++ .+..+.+ .++|+|
T Consensus 15 ~~i~v~G~-G~sG~a~a~~L~-~~G~~V~~-~D~~~~~~~~~~~~~l----~~~gi~~~~~~~~~~~~------~~~dlV 81 (458)
T PRK01710 15 KKVAVVGI-GVSNIPLIKFLV-KLGAKVTA-FDKKSEEELGEVSNEL----KELGVKLVLGENYLDKL------DGFDVI 81 (458)
T ss_pred CeEEEEcc-cHHHHHHHHHHH-HCCCEEEE-ECCCCCccchHHHHHH----HhCCCEEEeCCCChHHh------ccCCEE
Confidence 58999997 999999999876 46777654 67432101 00 111 23465553 2223434 368988
Q ss_pred EEcCCchhHHHHHHHHHHcCCCEEE--------------eCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcHHHHHHHH
Q 022250 111 IDFTDASTVYDNVKQATAFGMRSVV--------------YVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVi--------------gTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~ 174 (300)
|--..-....+.+..|.+.|+|++. +-||-+-. -...|..+-+..+.......| +|+.++..
T Consensus 82 V~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn--iG~p~~~~ 159 (458)
T PRK01710 82 FKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN--IGTPLFSN 159 (458)
T ss_pred EECCCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc--cChhHHHH
Confidence 7432112234556666667666553 22332210 112233444445555556677 56665533
Q ss_pred HHHHhccCCCCeEEEEc
Q 022250 175 AAISASFHYKNVEIVES 191 (300)
Q Consensus 175 ~a~~~~~~~~dieIiE~ 191 (300)
+. ... ..|+-|+|.
T Consensus 160 ~~-~~~--~~~~~VlE~ 173 (458)
T PRK01710 160 IE-EIK--EEDKVVLEL 173 (458)
T ss_pred Hh-hCC--CCCEEEEEc
Confidence 22 221 245667775
No 394
>PLN02928 oxidoreductase family protein
Probab=90.35 E-value=0.83 Score=43.99 Aligned_cols=68 Identities=13% Similarity=0.051 Sum_probs=42.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC--------cCCCCcceecCHHHHHhcccccCC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM--------EQPLEIPVMSDLTMVLGSISQSKA 106 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~--------~~~~gv~v~~dl~~~l~~~~~~~~ 106 (300)
-.+|+|+|+ |+||+.+++.+. .=++++++ +|+... .+.....+. ....+ .+.++++++. .
T Consensus 159 gktvGIiG~-G~IG~~vA~~l~-afG~~V~~-~dr~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~L~ell~------~ 226 (347)
T PLN02928 159 GKTVFILGY-GAIGIELAKRLR-PFGVKLLA-TRRSWT-SEPEDGLLIPNGDVDDLVDEKG--GHEDIYEFAG------E 226 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHh-hCCCEEEE-ECCCCC-hhhhhhhccccccccccccccC--cccCHHHHHh------h
Confidence 368999997 999999999887 45888876 564310 110000000 00011 3568999995 7
Q ss_pred ccEEEEcC
Q 022250 107 RAVVIDFT 114 (300)
Q Consensus 107 ~DVVIDfT 114 (300)
+|+|+-..
T Consensus 227 aDiVvl~l 234 (347)
T PLN02928 227 ADIVVLCC 234 (347)
T ss_pred CCEEEECC
Confidence 89998554
No 395
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=90.33 E-value=3.7 Score=36.54 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=50.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT 114 (300)
|+|.|.|++|.+|+.+++.+.+ .+.+++. ++++. .++.. +.+.+. .++. +-.|++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~---------------~~~~~~-----~~~~~~~~Dl~ 56 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQ-QGHKVIA-TGRRQ--ERLQE---------------LKDELG-----DNLYIAQLDVR 56 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EECCH--HHHHH---------------HHHHhc-----cceEEEEecCC
Confidence 5799999999999999999885 5788765 44432 11111 011111 1222 346788
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
.++...+.+....+. ++.+|+-..|.
T Consensus 57 ~~~~i~~~~~~~~~~~~~id~vi~~ag~ 84 (248)
T PRK10538 57 NRAAIEEMLASLPAEWRNIDVLVNNAGL 84 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 888777766655443 68888866553
No 396
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=90.33 E-value=1.7 Score=39.88 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=24.2
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (300)
||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-~g~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-SGHEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-CCCeEEEE
Confidence 689999999999999999875 46777653
No 397
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=90.32 E-value=0.76 Score=42.16 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=41.0
Q ss_pred EEEEcCCchHHHHHHHHHHhcC--C-cEEEEEEecCC---CC--cchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250 38 VIINGAVKEIGRAAVIAVTKAR--G-MEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~--~-~eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (300)
|+|+|+.|.||..++..+...+ . .+| ..+|.+. .+ .|............+..++|+++.+ .++|+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el-~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~------~~aDi 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIEL-VLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAF------KDADV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEE-EEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHh------CCCCE
Confidence 6899988999999999887654 2 344 4567532 11 1222222110022444557777777 48999
Q ss_pred EEEc
Q 022250 110 VIDF 113 (300)
Q Consensus 110 VIDf 113 (300)
||..
T Consensus 74 Vv~t 77 (263)
T cd00650 74 VIIT 77 (263)
T ss_pred EEEC
Confidence 9863
No 398
>PRK09134 short chain dehydrogenase; Provisional
Probab=90.28 E-value=5.2 Score=35.72 Aligned_cols=86 Identities=19% Similarity=0.294 Sum_probs=51.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf 113 (300)
..++.|.|++|.+|+.+++.+.+ .+..++....++. .....+. +++... ....+ +..|.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~-~g~~v~~~~~~~~--~~~~~~~--------------~~~~~~---~~~~~~~~~Dl 68 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAA-HGFDVAVHYNRSR--DEAEALA--------------AEIRAL---GRRAVALQADL 68 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHHH--------------HHHHhc---CCeEEEEEcCC
Confidence 46899999999999999999874 5778776554321 0111000 111100 01222 34577
Q ss_pred CCchhHHHHHHHHHH--cCCCEEEeCCCC
Q 022250 114 TDASTVYDNVKQATA--FGMRSVVYVPHI 140 (300)
Q Consensus 114 T~p~~~~~~~~~al~--~G~~vVigTTG~ 140 (300)
+.++...+.+..+.+ -++.+|+-..|.
T Consensus 69 ~d~~~~~~~~~~~~~~~~~iD~vi~~ag~ 97 (258)
T PRK09134 69 ADEAEVRALVARASAALGPITLLVNNASL 97 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence 877777776666554 247888777664
No 399
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.28 E-value=1.6 Score=42.83 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=77.0
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhh-hhcCcCCCCcceecCHHHHHh
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGM-VCDMEQPLEIPVMSDLTMVLG 99 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------~~g~------d~~~-~~g~~~~~gv~v~~dl~~~l~ 99 (300)
|..+|+|+|- |-+|--++-+.+ ..++.++| +|.+ ..|+ +..+ +...-.......++|.+++
T Consensus 8 ~~~~I~ViGL-GYVGLPlA~~fA-~~G~~ViG-~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-- 82 (436)
T COG0677 8 MSATIGVIGL-GYVGLPLAAAFA-SAGFKVIG-VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-- 82 (436)
T ss_pred CceEEEEEcc-ccccHHHHHHHH-HcCCceEe-EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc--
Confidence 3489999997 999999998766 56899988 4421 1121 1111 0000011224566677666
Q ss_pred cccccCCccEEEEcCC-------------chhHHHHHHHHHHcCCCEEEeCC---CCCHHHHHHHHHH-h---hhCCCeE
Q 022250 100 SISQSKARAVVIDFTD-------------ASTVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAF-C---DKASMGC 159 (300)
Q Consensus 100 ~~~~~~~~DVVIDfT~-------------p~~~~~~~~~al~~G~~vVigTT---G~~~e~~~~L~~~-a---~~~~i~i 159 (300)
..+|++|.+-+ -+.+.+.+...++.|-=||+++| |-+++-..-|.+. . --....+
T Consensus 83 -----~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 83 -----KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred -----ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 47899887632 23344556677889999999987 6777655555543 1 1123667
Q ss_pred EEcCCCcHHHHHH
Q 022250 160 LIAPTLSIGSILL 172 (300)
Q Consensus 160 v~a~N~SiGv~ll 172 (300)
.|||-=-.-.|.+
T Consensus 158 aysPERv~PG~~~ 170 (436)
T COG0677 158 AYSPERVLPGNVL 170 (436)
T ss_pred eeCccccCCCchh
Confidence 7777544434433
No 400
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.27 E-value=2.7 Score=37.22 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=51.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-cCHH-HHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLT-MVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~-~~l~~~~~~~~~DVVIDf 113 (300)
.||.|+|+ |+||...++.+.+ .+.+++ ++++.. .+.+.+++ ....+... ..++ +.+ .++|+||-+
T Consensus 11 k~vLVIGg-G~va~~ka~~Ll~-~ga~V~-VIs~~~-~~~l~~l~---~~~~i~~~~~~~~~~~l------~~adlViaa 77 (202)
T PRK06718 11 KRVVIVGG-GKVAGRRAITLLK-YGAHIV-VISPEL-TENLVKLV---EEGKIRWKQKEFEPSDI------VDAFLVIAA 77 (202)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCeEE-EEcCCC-CHHHHHHH---hCCCEEEEecCCChhhc------CCceEEEEc
Confidence 68999998 9999999988875 456655 444432 12222332 11122221 1222 223 478999888
Q ss_pred CCchhHHHHHHHHHHcCCCEEEe
Q 022250 114 TDASTVYDNVKQATAFGMRSVVY 136 (300)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVig 136 (300)
|..+.....+...++.++.+-+.
T Consensus 78 T~d~elN~~i~~~a~~~~lvn~~ 100 (202)
T PRK06718 78 TNDPRVNEQVKEDLPENALFNVI 100 (202)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEC
Confidence 86666655554444777766554
No 401
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.14 E-value=2.4 Score=39.49 Aligned_cols=124 Identities=13% Similarity=0.045 Sum_probs=66.8
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCc
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p 116 (300)
+|.|+|+ |.+|...++.++ ..+.+.+.++|... ... +.++ ... +++. ++.. ...+|++||++-.
T Consensus 147 ~vlV~G~-G~vG~~a~q~ak-~~G~~~v~~~~~~~--~rl-~~a~---~~~--~i~~-~~~~-----~~g~Dvvid~~G~ 210 (308)
T TIGR01202 147 PDLIVGH-GTLGRLLARLTK-AAGGSPPAVWETNP--RRR-DGAT---GYE--VLDP-EKDP-----RRDYRAIYDASGD 210 (308)
T ss_pred cEEEECC-CHHHHHHHHHHH-HcCCceEEEeCCCH--HHH-Hhhh---hcc--ccCh-hhcc-----CCCCCEEEECCCC
Confidence 6999997 999999998766 45777666666432 111 1111 111 1221 1111 1468999999975
Q ss_pred hh-HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022250 117 ST-VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF 181 (300)
Q Consensus 117 ~~-~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~ 181 (300)
.. ....+......|+=+++|.++-.. +.....-..+ ++.+..+.+++ -..+.++.+.+..
T Consensus 211 ~~~~~~~~~~l~~~G~iv~~G~~~~~~-~~~~~~~~~~--~~~i~~~~~~~--~~~~~~~~~l~~~ 271 (308)
T TIGR01202 211 PSLIDTLVRRLAKGGEIVLAGFYTEPV-NFDFVPAFMK--EARLRIAAEWQ--PGDLHAVRELIES 271 (308)
T ss_pred HHHHHHHHHhhhcCcEEEEEeecCCCc-ccccchhhhc--ceEEEEecccc--hhHHHHHHHHHHc
Confidence 44 455556666677777788653211 1111111222 35555444433 2356666666654
No 402
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=90.09 E-value=2.4 Score=44.02 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=27.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhc-CCcEEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA 66 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~ 66 (300)
++||.|.|++|-+|+.+++.+.+. ++.++++.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~ 38 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVL 38 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 579999999999999999999865 47888754
No 403
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=90.06 E-value=0.9 Score=41.88 Aligned_cols=128 Identities=15% Similarity=0.134 Sum_probs=71.5
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCH--HHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL--TMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl--~~~l~~~~~~~~~DVVID 112 (300)
.+||++.||.|-.|+.+++++..+|-+|+.-+-.+...|+....+. ...+ .|.|+ .++.. +.+....|.++
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~yt----k~ei-qy~~lst~D~~k-lee~~avd~wv- 91 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYT----KLEI-QYADLSTVDAVK-LEEPHAVDHWV- 91 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcc----hhhe-eecccchhhHHH-hhcCCceeeee-
Confidence 5999999999999999999999999999987766655555443222 1111 12221 11111 01123445555
Q ss_pred cCCchhHHHHHHHH--HHcCCCEEEeCC-------------CCCH-HHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250 113 FTDASTVYDNVKQA--TAFGMRSVVYVP-------------HIQL-ETVSALSAFCDKASMGCLIAPTLSIGSI 170 (300)
Q Consensus 113 fT~p~~~~~~~~~a--l~~G~~vVigTT-------------G~~~-e~~~~L~~~a~~~~i~iv~a~N~SiGv~ 170 (300)
|..|..+.+-...+ ..+|+..+|--. |+++ -+.+.|+.+.+-.+ |-.|+..-.++..
T Consensus 92 maLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~na~~iaN-PGCYaTgsQl~l~ 164 (340)
T KOG4354|consen 92 MALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIKNARLIAN-PGCYATGSQLPLV 164 (340)
T ss_pred eecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHhhhhhccC-CCcccccCcccch
Confidence 66676664433322 235665555421 2221 12345666655443 5566666666644
No 404
>PRK15076 alpha-galactosidase; Provisional
Probab=90.03 E-value=5.7 Score=39.47 Aligned_cols=156 Identities=14% Similarity=0.149 Sum_probs=82.1
Q ss_pred cceEEEEcCCchHHHHH--HHHHHh---cCCcEEEEEEecCCCCcc-hhh----hh-cCcCCCCcceecCHHHHHhcccc
Q 022250 35 NIKVIINGAVKEIGRAA--VIAVTK---ARGMEVAGAIDSHSVGED-IGM----VC-DMEQPLEIPVMSDLTMVLGSISQ 103 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i--~~~i~~---~~~~eLvg~vd~~~~g~d-~~~----~~-g~~~~~gv~v~~dl~~~l~~~~~ 103 (300)
|+||+|+|+ |.||-.. ++.+.. .++.|| ..+|.+..-.+ +.. .+ -......+..++|+.+++
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~ev-vLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal----- 73 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEI-ALMDIDPERLEESEIVARKLAESLGASAKITATTDRREAL----- 73 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEE-EEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHh-----
Confidence 479999998 9998443 234432 233454 46775320001 111 11 000123345567888887
Q ss_pred cCCccEEEEcCCch--hHH--HHHHHHHHcCCCE-EEeCCC---C-----CHHH----HHHHHHHhhhCCCeEEEcCCCc
Q 022250 104 SKARAVVIDFTDAS--TVY--DNVKQATAFGMRS-VVYVPH---I-----QLET----VSALSAFCDKASMGCLIAPTLS 166 (300)
Q Consensus 104 ~~~~DVVIDfT~p~--~~~--~~~~~al~~G~~v-VigTTG---~-----~~e~----~~~L~~~a~~~~i~iv~a~N~S 166 (300)
.++|+||...... ... .--+-.+++|+-- +..|+| + +-.. .+.|++.|-+ .+++ |||
T Consensus 74 -~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~---a~ii--n~t 147 (431)
T PRK15076 74 -QGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPD---ALLL--NYV 147 (431)
T ss_pred -CCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCC---eEEE--EcC
Confidence 4789998755432 112 3446778999863 224542 2 2222 2333333322 3333 666
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEccCCCCCCCchHHHHHHHHHH
Q 022250 167 IGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLS 211 (300)
Q Consensus 167 iGv~ll~~~a~~~~~~~~dieIiE~Hh~K~DaPSGTA~~l~~~i~ 211 (300)
=-+.++.+++. ++ +...++=. =|.|.+|+..+++.+.
T Consensus 148 NP~divt~~~~---~~-~~~rviG~----c~~~~~~~~~ia~~l~ 184 (431)
T PRK15076 148 NPMAMNTWAMN---RY-PGIKTVGL----CHSVQGTAEQLARDLG 184 (431)
T ss_pred ChHHHHHHHHh---cC-CCCCEEEE----CCCHHHHHHHHHHHhC
Confidence 66667766665 22 33344444 3568889988888763
No 405
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.94 E-value=2.4 Score=36.97 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=49.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf 113 (300)
+.+|.|+|++|.+|+.+++.+.+ .+.+++.+..++. ..... +.+.+.. ...... +..|+
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~-~g~~v~~~~~~~~--~~~~~---------------~~~~~~~--~~~~~~~~~~D~ 65 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLAR-AGADVVVHYRSDE--EAAEE---------------LVEAVEA--LGRRAQAVQADV 65 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCCCH--HHHHH---------------HHHHHHh--cCCceEEEECCc
Confidence 46899999999999999998875 5777765454321 11110 0111110 001222 34577
Q ss_pred CCchhHHHHHHHHHH--cCCCEEEeCCC
Q 022250 114 TDASTVYDNVKQATA--FGMRSVVYVPH 139 (300)
Q Consensus 114 T~p~~~~~~~~~al~--~G~~vVigTTG 139 (300)
+.++...+.+....+ .++.+|+=..|
T Consensus 66 ~~~~~v~~~~~~~~~~~~~id~vi~~ag 93 (249)
T PRK12825 66 TDKAALEAAVAAAVERFGRIDILVNNAG 93 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 777777666654443 36788877665
No 406
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=89.92 E-value=1.1 Score=42.57 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=42.4
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-.+|+|+|. |++|+.+++.+.. =++++.+ +|+.. ... ..+++ +.++++++. .+|+|+-..
T Consensus 145 gktvGIiG~-G~IG~~vA~~~~~-fgm~V~~-~d~~~--~~~--------~~~~~-~~~l~ell~------~sDvv~lh~ 204 (311)
T PRK08410 145 GKKWGIIGL-GTIGKRVAKIAQA-FGAKVVY-YSTSG--KNK--------NEEYE-RVSLEELLK------TSDIISIHA 204 (311)
T ss_pred CCEEEEECC-CHHHHHHHHHHhh-cCCEEEE-ECCCc--ccc--------ccCce-eecHHHHhh------cCCEEEEeC
Confidence 478999997 9999999998764 4888775 56532 110 11222 468999995 789998655
No 407
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=89.90 E-value=4 Score=36.04 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=51.2
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE---EEEc
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF 113 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---VIDf 113 (300)
.+.|.|++|.+|+.+++.+.+ .+.+++...++.. ....+. ++++-. ...++ ..|.
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~-~G~~vv~~~~~~~--~~~~~~--------------~~~~~~-----~~~~~~~~~~D~ 62 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHK-DGFKVVAGCGPNS--PRRVKW--------------LEDQKA-----LGFDFIASEGNV 62 (246)
T ss_pred EEEEECCCChHHHHHHHHHHH-cCCEEEEEcCCCh--HHHHHH--------------HHHHHh-----cCCcEEEEEcCC
Confidence 479999999999999999985 4778776544321 000000 111111 12233 3678
Q ss_pred CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 114 T~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
+.++...+.+..+.+. ++++|+=+.|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 91 (246)
T PRK12938 63 GDWDSTKAAFDKVKAEVGEIDVLVNNAGI 91 (246)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 8888777766665553 68888877765
No 408
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=89.89 E-value=0.46 Score=45.05 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=50.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
-+++|+|+ |..++.+++++.....++=+-+++++. ..+..++..-...+ +...+|.++++. ++|+||=+
T Consensus 129 ~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~v~~~~~~~~av~------~aDii~ta 199 (313)
T PF02423_consen 129 RTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSP--ERAEAFAARLRDLGVPVVAVDSAEEAVR------GADIIVTA 199 (313)
T ss_dssp -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSH--HHHHHHHHHHHCCCTCEEEESSHHHHHT------TSSEEEE-
T ss_pred ceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccCh--hHHHHHHHhhccccccceeccchhhhcc------cCCEEEEc
Confidence 57999997 999999999998765688888888753 22222221111234 445689999984 79999976
Q ss_pred CCchh---HHHHHHHHHHcCCCEE-EeC
Q 022250 114 TDAST---VYDNVKQATAFGMRSV-VYV 137 (300)
Q Consensus 114 T~p~~---~~~~~~~al~~G~~vV-igT 137 (300)
|+... +.+ ...++.|.++. ||.
T Consensus 200 T~s~~~~P~~~--~~~l~~g~hi~~iGs 225 (313)
T PF02423_consen 200 TPSTTPAPVFD--AEWLKPGTHINAIGS 225 (313)
T ss_dssp ---SSEEESB---GGGS-TT-EEEE-S-
T ss_pred cCCCCCCcccc--HHHcCCCcEEEEecC
Confidence 64333 222 23567788776 454
No 409
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=89.86 E-value=14 Score=32.88 Aligned_cols=175 Identities=18% Similarity=0.107 Sum_probs=87.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDf 113 (300)
.-+|.|.|++|.+|+.+++.+.+ .+.+++.+ +++. ....... +++.... ....+ -+..|+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~-~g~~vi~~-~r~~--~~~~~~~--------------~~~~~~~-~~~~~~~~~~D~ 62 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAE-EGYRVAVA-DINS--EKAANVA--------------QEINAEY-GEGMAYGFGADA 62 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEE-ECCH--HHHHHHH--------------HHHHHhc-CCceeEEEEccC
Confidence 34699999999999999999885 47887654 4332 1111100 1111000 00012 245678
Q ss_pred CCchhHHHHHHHHHH--cCCCEEEeCCCCC------HHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCC
Q 022250 114 TDASTVYDNVKQATA--FGMRSVVYVPHIQ------LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKN 185 (300)
Q Consensus 114 T~p~~~~~~~~~al~--~G~~vVigTTG~~------~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~d 185 (300)
+.++.....+..+.+ .++++|+=+.|.. +...+.+++..+ .|+---.+++..+.+.+.+...+
T Consensus 63 ~~~~~i~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~---------~n~~~~~~l~~~~~~~l~~~~~~ 133 (259)
T PRK12384 63 TSEQSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQ---------VNLVGYFLCAREFSRLMIRDGIQ 133 (259)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHH---------hccHHHHHHHHHHHHHHHhCCCC
Confidence 888777766665544 3567777766532 111122222222 23222334445555544322211
Q ss_pred eEEEE--c-c--C-CCCCCCchHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCeeE
Q 022250 186 VEIVE--S-R--P-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSST 252 (300)
Q Consensus 186 ieIiE--~-H--h-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H 252 (300)
--|+= . . . .....|-++++...+.+.+. +.++ +.+.+|.|.++|.|.++.+.
T Consensus 134 ~~iv~~ss~~~~~~~~~~~~Y~~sKaa~~~l~~~---la~e------------~~~~gi~v~~v~pg~~~~~~ 191 (259)
T PRK12384 134 GRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQS---LALD------------LAEYGITVHSLMLGNLLKSP 191 (259)
T ss_pred cEEEEecCcccccCCCCCchhHHHHHHHHHHHHH---HHHH------------HHHcCcEEEEEecCCcccch
Confidence 12221 1 1 1 23445667777655444321 0000 01257999999998876543
No 410
>PRK06179 short chain dehydrogenase; Provisional
Probab=89.83 E-value=5.4 Score=35.86 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=48.0
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT 114 (300)
.+|.|.|++|.+|+.+++.+.+ .+.+++.. +++. ..... . .+. -+..|.+
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~-~g~~V~~~-~r~~--~~~~~-------------------~------~~~~~~~~D~~ 55 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLAR-AGYRVFGT-SRNP--ARAAP-------------------I------PGVELLELDVT 55 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHH-CCCEEEEE-eCCh--hhccc-------------------c------CCCeeEEeecC
Confidence 4699999999999999999875 57887654 3321 00000 0 011 1455777
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
.++...+.+..+.+. .+++|+-..|.
T Consensus 56 d~~~~~~~~~~~~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 56 DDASVQAAVDEVIARAGRIDVLVNNAGV 83 (270)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 777776666655442 46777776654
No 411
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=89.80 E-value=2.1 Score=41.84 Aligned_cols=59 Identities=19% Similarity=0.098 Sum_probs=40.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
.+|+|+|+ |+||+.+++.+.. -++++.+ +|+... .. . +..-+.+++++++ .+|+|+-..
T Consensus 117 ktvGIIG~-G~IG~~va~~l~a-~G~~V~~-~Dp~~~--~~--------~-~~~~~~~l~ell~------~aDiV~lh~ 175 (381)
T PRK00257 117 RTYGVVGA-GHVGGRLVRVLRG-LGWKVLV-CDPPRQ--EA--------E-GDGDFVSLERILE------ECDVISLHT 175 (381)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-ECCccc--cc--------c-cCccccCHHHHHh------hCCEEEEeC
Confidence 67999998 9999999998874 5888875 565321 00 0 1112457888884 688887544
No 412
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=89.78 E-value=1 Score=42.66 Aligned_cols=82 Identities=23% Similarity=0.384 Sum_probs=52.3
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCC--cc-EEEEcC
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA--RA-VVIDFT 114 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~--~D-VVIDfT 114 (300)
.+|.|+|.++||+.++.+++ .++.++ .+.++. .....+. .|+.+ ..+ +. +++|||
T Consensus 52 AVVTGaTDGIGKayA~eLAk-rG~nvv-LIsRt~--~KL~~v~--------------kEI~~----~~~vev~~i~~Dft 109 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAK-RGFNVV-LISRTQ--EKLEAVA--------------KEIEE----KYKVEVRIIAIDFT 109 (312)
T ss_pred EEEECCCCcchHHHHHHHHH-cCCEEE-EEeCCH--HHHHHHH--------------HHHHH----HhCcEEEEEEEecC
Confidence 46889999999999999985 799954 455542 1111110 12222 123 22 589999
Q ss_pred CchhHHHHHHHHH-HcCCCEEEeCCCCC
Q 022250 115 DASTVYDNVKQAT-AFGMRSVVYVPHIQ 141 (300)
Q Consensus 115 ~p~~~~~~~~~al-~~G~~vVigTTG~~ 141 (300)
.++..++.++..+ .-.+-++|=.-|..
T Consensus 110 ~~~~~ye~i~~~l~~~~VgILVNNvG~~ 137 (312)
T KOG1014|consen 110 KGDEVYEKLLEKLAGLDVGILVNNVGMS 137 (312)
T ss_pred CCchhHHHHHHHhcCCceEEEEeccccc
Confidence 9998877776554 44577777666643
No 413
>PRK06953 short chain dehydrogenase; Provisional
Probab=89.74 E-value=1.8 Score=37.81 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=49.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf 113 (300)
|.++.|.|++|.+|+.+++.+.+ .+.+++.+ +++. .+.. ++.. .... +..|+
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~-~G~~v~~~-~r~~--~~~~------------------~~~~-----~~~~~~~~D~ 53 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRA-DGWRVIAT-ARDA--AALA------------------ALQA-----LGAEALALDV 53 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHh-CCCEEEEE-ECCH--HHHH------------------HHHh-----ccceEEEecC
Confidence 35789999999999999999874 58887764 4331 1111 1111 1111 46678
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250 114 TDASTVYDNVKQATAFGMRSVVYVPHI 140 (300)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigTTG~ 140 (300)
+.++...+.+......++++|+-+.|.
T Consensus 54 ~~~~~v~~~~~~~~~~~~d~vi~~ag~ 80 (222)
T PRK06953 54 ADPASVAGLAWKLDGEALDAAVYVAGV 80 (222)
T ss_pred CCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 887776665444433457888877664
No 414
>PLN02650 dihydroflavonol-4-reductase
Probab=89.72 E-value=1.2 Score=42.04 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=27.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
..+|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~-~G~~V~~~~r 37 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLE-RGYTVRATVR 37 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHH-CCCEEEEEEc
Confidence 46899999999999999999885 5788877543
No 415
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.69 E-value=6.7 Score=38.67 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=24.4
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
||.|+|+ |+.|...++.+. ..+.++. ++|..
T Consensus 2 ~v~viG~-G~sG~s~a~~l~-~~G~~V~-~~D~~ 32 (459)
T PRK02705 2 IAHVIGL-GRSGIAAARLLK-AQGWEVV-VSDRN 32 (459)
T ss_pred eEEEEcc-CHHHHHHHHHHH-HCCCEEE-EECCC
Confidence 7999998 999999988766 5688765 47753
No 416
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.68 E-value=1.1 Score=43.79 Aligned_cols=133 Identities=15% Similarity=0.138 Sum_probs=70.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
-||.|+|. |++|..+++.+.+ .+.++++ +|............. . ....+.+... .++|++|-...
T Consensus 4 ~~i~iiGl-G~~G~slA~~l~~-~G~~V~g-~D~~~~~~~~~~~~~---~---~~~~~~~~~~------~~~dlvV~s~g 68 (418)
T PRK00683 4 QRVVVLGL-GVTGKSIARFLAQ-KGVYVIG-VDKSLEALQSCPYIH---E---RYLENAEEFP------EQVDLVVRSPG 68 (418)
T ss_pred CeEEEEEE-CHHHHHHHHHHHH-CCCEEEE-EeCCccccchhHHHh---h---hhcCCcHHHh------cCCCEEEECCC
Confidence 47999998 9999999988774 5677554 675321000000000 0 0112222333 35788875543
Q ss_pred chhHHHHHHHHHHcCCCEEEeC-----------------CCCCH--HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHH
Q 022250 116 ASTVYDNVKQATAFGMRSVVYV-----------------PHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (300)
Q Consensus 116 p~~~~~~~~~al~~G~~vVigT-----------------TG~~~--e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a 176 (300)
.....+.+..|.++|+++|..+ ||-+- --...|..+-++.+.+.....| +|+.++...
T Consensus 69 i~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~Gn--iG~p~l~~~- 145 (418)
T PRK00683 69 IKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGN--IGIPILDGM- 145 (418)
T ss_pred CCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECC--cCHHHHHHh-
Confidence 3444666777777777665432 22110 0112234444445556666677 666654322
Q ss_pred HHhccCCCCeEEEEc
Q 022250 177 ISASFHYKNVEIVES 191 (300)
Q Consensus 177 ~~~~~~~~dieIiE~ 191 (300)
. ..++.|+|.
T Consensus 146 ---~--~~~~~V~E~ 155 (418)
T PRK00683 146 ---Q--QPGVRVVEI 155 (418)
T ss_pred ---h--cCCEEEEEe
Confidence 2 146678886
No 417
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=89.63 E-value=1.3 Score=41.05 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=27.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
.+|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~-~g~~V~~~~r 36 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQ-RGYTVKATVR 36 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHH-CCCEEEEEEc
Confidence 5799999999999999999885 5788877653
No 418
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.58 E-value=2.6 Score=41.53 Aligned_cols=61 Identities=20% Similarity=0.102 Sum_probs=42.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-.+|+|+|. |++|+.+++.+.. =++++++ +|+.. .. ...++....++++++. .+|+|+-..
T Consensus 151 gktvGIiG~-G~IG~~vA~~~~~-fGm~V~~-~d~~~--~~--------~~~~~~~~~~l~ell~------~sDiVslh~ 211 (409)
T PRK11790 151 GKTLGIVGY-GHIGTQLSVLAES-LGMRVYF-YDIED--KL--------PLGNARQVGSLEELLA------QSDVVSLHV 211 (409)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-CCCEEEE-ECCCc--cc--------ccCCceecCCHHHHHh------hCCEEEEcC
Confidence 378999997 9999999998774 5888875 56432 00 0112333468999995 789888654
No 419
>PRK07454 short chain dehydrogenase; Provisional
Probab=89.55 E-value=5.6 Score=35.00 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=52.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf 113 (300)
|.++.|.|++|.+|+.+++.+.+ .+.+++. ++++. .+..++ .+.+.. ....++ +..|.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D~ 64 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAK-AGWDLAL-VARSQ--DALEAL---------------AAELRS--TGVKAAAYSIDL 64 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHHHh--CCCcEEEEEccC
Confidence 46799999999999999999875 5777655 45432 111111 111110 001233 35688
Q ss_pred CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 114 T~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
+.++.....+..+.+. ++++|+-..|.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 65 SNPEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 8888877777766553 58888877663
No 420
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.50 E-value=1.1 Score=42.57 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=26.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
.||+|+|+ |++|..++-.+...+-..=+..+|.+
T Consensus 7 ~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 69999998 99999999988765544334467753
No 421
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=89.44 E-value=2 Score=40.41 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=26.1
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (300)
+|.|.|++|-+|+.+++.+.+ .+.+++++.
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~ 31 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLE-KGYEVHGLI 31 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHH-CCCEEEEEe
Confidence 799999999999999999885 478888754
No 422
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.44 E-value=1.1 Score=41.90 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=51.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc---cee---cCHHHHHhcccccCCccE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVM---SDLTMVLGSISQSKARAV 109 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~---~dl~~~l~~~~~~~~~DV 109 (300)
-+|.|+|++|.+|+.+++.+. ..+.++++...... ....+.. .+|+ ..+ .++.+.+.+.. ...+|+
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk-~~G~~Vi~~~~~~~---~~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~-~~gvd~ 224 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAK-LKGCYVVGSAGSDE---KVDLLKN---KLGFDDAFNYKEEPDLDAALKRYF-PNGIDI 224 (338)
T ss_pred CEEEEecCccHHHHHHHHHHH-HcCCEEEEEeCCHH---HHHHHHH---hcCCceeEEcCCcccHHHHHHHhC-CCCcEE
Confidence 369999999999999998665 56888776554321 1111100 0221 111 13333332111 135788
Q ss_pred EEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250 110 VIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vVigTT 138 (300)
++|++......+.+......|.=+.+|.+
T Consensus 225 v~d~~g~~~~~~~~~~l~~~G~iv~~G~~ 253 (338)
T cd08295 225 YFDNVGGKMLDAVLLNMNLHGRIAACGMI 253 (338)
T ss_pred EEECCCHHHHHHHHHHhccCcEEEEeccc
Confidence 99887654444444444455555556644
No 423
>PRK06153 hypothetical protein; Provisional
Probab=89.39 E-value=3.3 Score=40.67 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=58.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCcc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARA 108 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~D 108 (300)
.||+|+|| |..|..+++.+....--+|+ ++|.+ ...+..+.+ .. ...|. +-.+-+.+.+.+ -.++
T Consensus 177 ~~VaIVG~-GG~GS~Va~~LAR~GVgeI~-LVD~D~Ve~SNLnRQ~gaf-~~-~DvGk~~~KVevaa~rl~~----in~~ 248 (393)
T PRK06153 177 QRIAIIGL-GGTGSYILDLVAKTPVREIH-LFDGDDFLQHNAFRSPGAA-SI-EELREAPKKVDYFKSRYSN----MRRG 248 (393)
T ss_pred CcEEEEcC-CccHHHHHHHHHHcCCCEEE-EECCCEecccccccccccC-CH-hHcCCcchHHHHHHHHHHH----hCCe
Confidence 58999999 99999999999876544554 46632 111111000 00 01111 111112222221 2344
Q ss_pred EEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEE
Q 022250 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 161 (300)
Q Consensus 109 VVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~ 161 (300)
+......- ..+++. .+ .+..+|+..+.-. +....|.++|.+.++|++-
T Consensus 249 I~~~~~~I--~~~n~~-~L-~~~DiV~dcvDn~-~aR~~ln~~a~~~gIP~Id 296 (393)
T PRK06153 249 IVPHPEYI--DEDNVD-EL-DGFTFVFVCVDKG-SSRKLIVDYLEALGIPFID 296 (393)
T ss_pred EEEEeecC--CHHHHH-Hh-cCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEE
Confidence 43221111 122332 22 5788888887532 2356677888888888773
No 424
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=89.24 E-value=3.3 Score=37.22 Aligned_cols=99 Identities=9% Similarity=0.153 Sum_probs=58.0
Q ss_pred HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce---ecCHHHHHhcccccCCccE-EEEcC---Cch-h----
Q 022250 51 AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAV-VIDFT---DAS-T---- 118 (300)
Q Consensus 51 i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DV-VIDfT---~p~-~---- 118 (300)
=++++.+.-++-++|++-++.- ...+.+ .++++++.+ ..+|| .+|.| .|+ .
T Consensus 57 dIkai~~~v~vPIIGIiKrd~~------------~s~v~ITptlkeVd~L~~-----~Ga~IIA~DaT~R~RP~~~~~~~ 119 (229)
T COG3010 57 DIKAIRAVVDVPIIGIIKRDYP------------DSPVRITPTLKEVDALAE-----AGADIIAFDATDRPRPDGDLEEL 119 (229)
T ss_pred hHHHHHhhCCCCeEEEEecCCC------------CCCceecccHHHHHHHHH-----CCCcEEEeecccCCCCcchHHHH
Confidence 3455666677888888865431 112222 245555554 45663 56666 344 1
Q ss_pred ----------------HHHHHHHHHHcCCCEEEeCC--CCCH-------HHHHHHHHHhhhCCCeEEEcCCCcHH
Q 022250 119 ----------------VYDNVKQATAFGMRSVVYVP--HIQL-------ETVSALSAFCDKASMGCLIAPTLSIG 168 (300)
Q Consensus 119 ----------------~~~~~~~al~~G~~vVigTT--G~~~-------e~~~~L~~~a~~~~i~iv~a~N~SiG 168 (300)
..+-...|.+.|..+| ||| |++. .+++.++++++ .+.+++-=.+|.--
T Consensus 120 i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~I-GTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP 192 (229)
T COG3010 120 IARIKYPGQLAMADCSTFEEGLNAHKLGFDII-GTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTP 192 (229)
T ss_pred HHHhhcCCcEEEeccCCHHHHHHHHHcCCcEE-ecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCH
Confidence 2344567788898887 887 7654 24556666665 66777765665543
No 425
>PLN00198 anthocyanidin reductase; Provisional
Probab=89.20 E-value=1.4 Score=41.28 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=29.0
Q ss_pred CCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250 30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (300)
Q Consensus 30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (300)
.|++ +.+|.|.|++|-+|+.+++.+.+ .+.+++++.
T Consensus 5 ~~~~-~~~vlItG~~GfIG~~l~~~L~~-~g~~V~~~~ 40 (338)
T PLN00198 5 TPTG-KKTACVIGGTGFLASLLIKLLLQ-KGYAVNTTV 40 (338)
T ss_pred cCCC-CCeEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence 3444 57899999999999999999886 477887654
No 426
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.18 E-value=0.93 Score=42.93 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=24.6
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
||+|+|+ |.+|..++-.+...+-+.=+..+|.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 7999998 9999999988876544433446775
No 427
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=89.17 E-value=1.7 Score=41.37 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=54.7
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCc
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p 116 (300)
-|.|.+|+|..|+.+.+. ++.+++.+||+...+. . -.++ .+. ..+|++||+-.+
T Consensus 153 tvvVSaAaGaVGsvvgQi-AKlkG~rVVGiaGg~e---K-~~~l--------------~~~-------lGfD~~idyk~~ 206 (340)
T COG2130 153 TVVVSAAAGAVGSVVGQI-AKLKGCRVVGIAGGAE---K-CDFL--------------TEE-------LGFDAGIDYKAE 206 (340)
T ss_pred EEEEEecccccchHHHHH-HHhhCCeEEEecCCHH---H-HHHH--------------HHh-------cCCceeeecCcc
Confidence 488999999999999985 5589999999875431 0 0111 111 368888888766
Q ss_pred hhHHHHHHHHHHcCCCEEEeCCCC
Q 022250 117 STVYDNVKQATAFGMRSVVYVPHI 140 (300)
Q Consensus 117 ~~~~~~~~~al~~G~~vVigTTG~ 140 (300)
...+.+..++-.|+++..+..|-
T Consensus 207 -d~~~~L~~a~P~GIDvyfeNVGg 229 (340)
T COG2130 207 -DFAQALKEACPKGIDVYFENVGG 229 (340)
T ss_pred -cHHHHHHHHCCCCeEEEEEcCCc
Confidence 45666666777888888888764
No 428
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=89.13 E-value=2.9 Score=40.87 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=57.2
Q ss_pred EEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCC---Ccchhhhh----cCc------------CCCCcceec---CHHH
Q 022250 40 INGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV---GEDIGMVC----DME------------QPLEIPVMS---DLTM 96 (300)
Q Consensus 40 V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~---g~d~~~~~----g~~------------~~~gv~v~~---dl~~ 96 (300)
|.|+||-+|+..++.+.+.|+ +++++....... -+.+.++- .+. ...++.++. .+.+
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~~ 80 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGLIA 80 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHHHH
Confidence 579999999999999887655 999998763211 00011100 000 001123332 2333
Q ss_pred HHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250 97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (300)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT 137 (300)
+.+ ..++|+||-...-.+-..-...|+++|+.+-...
T Consensus 81 l~~----~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLAN 117 (383)
T PRK12464 81 VAT----HPGSDLVLSSVVGAAGLLPTIEALKAKKDIALAN 117 (383)
T ss_pred HHc----CCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEec
Confidence 333 2467988877777777777788889998877663
No 429
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=89.02 E-value=4.7 Score=33.46 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=21.5
Q ss_pred EEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecC
Q 022250 38 VIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSH 70 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~ 70 (300)
..++|. |..|+.+++.+.+.+ +++++|.+|.+
T Consensus 80 ~~~v~~-~~~~~~~~~~l~~~~~~g~~vvg~~d~~ 113 (175)
T PF13727_consen 80 VLIVGA-GGAGRELAEALRSNPRLGYRVVGFVDDD 113 (175)
T ss_dssp EEEE---SHHHHHHHHHHHH--SSSEEEEEEE-S-
T ss_pred eEEEEE-echHHHHHHHHHhhhhcCceEEEEEeCc
Confidence 356675 788999999997654 68999999865
No 430
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.99 E-value=2.4 Score=44.78 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=25.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
.-||+|+|+ |-||..|+..++. .+++++ .+|.
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~-~G~~V~-l~d~ 344 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSAS-KGVPVI-MKDI 344 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHh-CCCeEE-EEeC
Confidence 357999998 9999999998774 588766 4664
No 431
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=88.93 E-value=1.4 Score=41.96 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=24.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH 70 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~ 70 (300)
+||+|+|+ |++|+.++-.+....-. ||+ .+|.+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~-LiDi~ 34 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELV-LIDIN 34 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEE-EEEcc
Confidence 58999998 99999999988544333 444 57753
No 432
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=88.93 E-value=2.5 Score=41.79 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=26.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
+..|.|+|+||+.|+.+++.+.+ .++-+-+++-
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llk-rgf~vra~VR 111 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLK-RGFSVRALVR 111 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHH-CCCeeeeecc
Confidence 58899999999999999998885 4566655553
No 433
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=88.87 E-value=3.3 Score=40.99 Aligned_cols=123 Identities=10% Similarity=0.077 Sum_probs=65.5
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec---CCCCcc-hhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGED-IGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~---~~~g~d-~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (300)
||.||+|+|. |-++..+++++.+ -+++++++... +..+.. +.+..-+......+-|.|.+.+++ ++...++|+
T Consensus 1 ~~kkili~g~-g~~~~~~~~aa~~-lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~-~a~~~~id~ 77 (449)
T TIGR00514 1 MLDKILIANR-GEIALRILRACKE-LGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIIS-AAEITGADA 77 (449)
T ss_pred CcceEEEeCC-CHHHHHHHHHHHH-cCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHH-HHHHhCCCE
Confidence 4679999997 9999999998875 58998876431 111110 111000000111123555555553 122357888
Q ss_pred EEEcCC--chhHHHHHHHHHHcCCCEEEeCC-CCC-HHHHHHHHHHhhhCCCeEE
Q 022250 110 VIDFTD--ASTVYDNVKQATAFGMRSVVYVP-HIQ-LETVSALSAFCDKASMGCL 160 (300)
Q Consensus 110 VIDfT~--p~~~~~~~~~al~~G~~vVigTT-G~~-~e~~~~L~~~a~~~~i~iv 160 (300)
|+-... .+. ......+.+.|++++.-.+ .+. -......+++++++|+|+.
T Consensus 78 I~pg~g~~se~-~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~p 131 (449)
T TIGR00514 78 IHPGYGFLSEN-ANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCV 131 (449)
T ss_pred EEeCCCccccC-HHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCC
Confidence 874221 111 2244566778888763221 111 1123456777888888753
No 434
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=88.86 E-value=3.8 Score=38.64 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=24.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
+||+|+|+ |.||..++..++...-.+ +-.+|.
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~-VvlvDi 33 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELAD-LVLLDV 33 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCe-EEEEeC
Confidence 58999998 999999999887543236 556775
No 435
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=88.83 E-value=1 Score=42.55 Aligned_cols=91 Identities=5% Similarity=0.068 Sum_probs=59.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
-+++|+|+ |..|+.+++++..-..++=+-+++++. ..+..++. +....+ +.+.+|.++++. ++|||+-
T Consensus 118 ~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~f~~~~~~~~~~~v~~~~~~~eav~------~aDIV~t 188 (301)
T PRK06407 118 ENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNF--DHARAFAERFSKEFGVDIRPVDNAEAALR------DADTITS 188 (301)
T ss_pred cEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence 67999997 999999999998877888788888653 22222221 001224 445689999984 8999996
Q ss_pred cCCc-hhHHHHHHHHHHcCCCEE-EeC
Q 022250 113 FTDA-STVYDNVKQATAFGMRSV-VYV 137 (300)
Q Consensus 113 fT~p-~~~~~~~~~al~~G~~vV-igT 137 (300)
.|+. +.+.+ ...++.|.+|. ||+
T Consensus 189 aT~s~~P~~~--~~~l~pg~hV~aiGs 213 (301)
T PRK06407 189 ITNSDTPIFN--RKYLGDEYHVNLAGS 213 (301)
T ss_pred ecCCCCcEec--HHHcCCCceEEecCC
Confidence 6642 22221 23456788877 454
No 436
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.82 E-value=1.9 Score=45.53 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=27.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
..||+|+|+ |-||..|+..++...+++++- +|.
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~G~~V~l-~d~ 341 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKAGLPVRI-KDI 341 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHcCCeEEE-EeC
Confidence 468999998 999999999877567888764 664
No 437
>PRK07825 short chain dehydrogenase; Provisional
Probab=88.82 E-value=3.9 Score=36.93 Aligned_cols=80 Identities=21% Similarity=0.128 Sum_probs=51.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT 114 (300)
.+|.|.|++|.+|+.+++.+.+ .+..++. ++++. ....++ .+.+ ..+. +..|++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~-~G~~v~~-~~r~~--~~~~~~---------------~~~~------~~~~~~~~D~~ 60 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAA-LGARVAI-GDLDE--ALAKET---------------AAEL------GLVVGGPLDVT 60 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHh------ccceEEEccCC
Confidence 5799999999999999998875 5777654 33321 111110 0111 1122 356899
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
.++...+.+..+.+. +++++|-..|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 88 (273)
T PRK07825 61 DPASFAAFLDAVEADLGPIDVLVNNAGV 88 (273)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 998887777766553 67888876653
No 438
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=88.70 E-value=0.96 Score=42.60 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=24.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
|||.|.|++|-+|+.+++.+.+. +.+.+-.++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~ 32 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVD 32 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEec
Confidence 48999999999999999999865 333333344
No 439
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=88.67 E-value=1.1 Score=43.07 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=58.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID 112 (300)
-.++|+|+ |.+++.+++++.+.-+++=+-+++++. +....++ .+....+ +...+|.++++ ..+|+||-
T Consensus 131 ~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~--~~~e~~a~~l~~~~~~~v~a~~s~~~av------~~aDiIvt 201 (330)
T COG2423 131 STLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDP--EAAEAFAARLRKRGGEAVGAADSAEEAV------EGADIVVT 201 (330)
T ss_pred cEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCH--HHHHHHHHHHHhhcCccceeccCHHHHh------hcCCEEEE
Confidence 35999998 999999999999888887778888653 1111121 1112333 34457888988 47999997
Q ss_pred cCCchhHHHHHHHHHHcCCCEE
Q 022250 113 FTDASTVYDNVKQATAFGMRSV 134 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vV 134 (300)
+|+... .-....-++.|.|+.
T Consensus 202 ~T~s~~-Pil~~~~l~~G~hI~ 222 (330)
T COG2423 202 ATPSTE-PVLKAEWLKPGTHIN 222 (330)
T ss_pred ecCCCC-CeecHhhcCCCcEEE
Confidence 664333 222245566777776
No 440
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.66 E-value=6.7 Score=36.91 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=49.4
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCcCCCCcc-e--e--cCHHHHHhcccccCCccEE
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIP-V--M--SDLTMVLGSISQSKARAVV 110 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~~~~~g~~~~~gv~-v--~--~dl~~~l~~~~~~~~~DVV 110 (300)
+|.|+|+ |.+|...++.+.. .+.+ +++ ++.+. .. .+++ .++|.. + + +++++.... ...+|++
T Consensus 172 ~VlV~G~-G~vG~~aiqlak~-~G~~~Vi~-~~~~~--~~-~~~a---~~lGa~~vi~~~~~~~~~~~~~---~g~~D~v 239 (343)
T PRK09880 172 RVFVSGV-GPIGCLIVAAVKT-LGAAEIVC-ADVSP--RS-LSLA---REMGADKLVNPQNDDLDHYKAE---KGYFDVS 239 (343)
T ss_pred EEEEECC-CHHHHHHHHHHHH-cCCcEEEE-EeCCH--HH-HHHH---HHcCCcEEecCCcccHHHHhcc---CCCCCEE
Confidence 6999997 9999999987664 5664 543 44321 11 1121 123321 1 1 234444421 1248999
Q ss_pred EEcCCchhHHHHHHHHH-HcCCCEEEeCC
Q 022250 111 IDFTDASTVYDNVKQAT-AFGMRSVVYVP 138 (300)
Q Consensus 111 IDfT~p~~~~~~~~~al-~~G~~vVigTT 138 (300)
+|++-.....+.+..++ ..|+=+.+|.+
T Consensus 240 id~~G~~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 240 FEVSGHPSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred EECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence 99987544444444444 45555556754
No 441
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=88.64 E-value=2.6 Score=39.83 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=25.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEec
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (300)
|||+|+|++|.+|..++..+...+-. +|+. +|+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~l-vd~ 34 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINL-ISR 34 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EEC
Confidence 68999999899999999988865432 4554 454
No 442
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=88.50 E-value=2 Score=41.99 Aligned_cols=89 Identities=13% Similarity=0.186 Sum_probs=46.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
|||+|+|. |.=...+++.+.++++...+.+ ++...|.. .. .+ .+.+ +.|.+++++ ..+..++|+++-.+
T Consensus 1 ~kvliiG~-G~~~~~l~~~l~~~~~~~~i~~-~~~n~g~~---~~---~~-~~~~~~~d~~~l~~-~~~~~~id~vi~~~ 70 (420)
T PRK00885 1 MKVLVIGS-GGREHALAWKLAQSPLVEKVYV-APGNAGTA---LL---AE-NVVIDVTDIEALVA-FAKEEGIDLTVVGP 70 (420)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEE-eCCCHHHH---hh---cc-ccCCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence 69999997 6545567877777766543333 43221111 00 01 1111 256666543 12235789887433
Q ss_pred CchhHHHHHHHHHHcCCCEE
Q 022250 115 DASTVYDNVKQATAFGMRSV 134 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vV 134 (300)
...........+.+.|++++
T Consensus 71 e~~l~~~~~~~l~~~gi~~~ 90 (420)
T PRK00885 71 EAPLVAGIVDAFRAAGLPIF 90 (420)
T ss_pred chHHHHHHHHHHHHCCCcEE
Confidence 22223344556667888866
No 443
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=88.47 E-value=3.2 Score=39.05 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=26.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEec
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS 69 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~ 69 (300)
.+|.|.|++|.+|+.+++.+.+.. ..+++. +++
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~-~~r 38 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIII-YSR 38 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEE-EcC
Confidence 679999999999999999988653 356664 443
No 444
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=88.45 E-value=1.9 Score=40.17 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=28.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
.+|.|.|++|.+|+.+++.+.+ .+.++++.++.
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~ 38 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLL-RGYTVKATVRD 38 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECC
Confidence 5899999999999999998875 47888877654
No 445
>PRK12743 oxidoreductase; Provisional
Probab=88.42 E-value=4.3 Score=36.29 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=52.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf 113 (300)
+-+|.|.|++|.+|+.+++.+.+ .+.+++....++. .....+. +++-. ....++ +-+|+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~-~G~~V~~~~~~~~--~~~~~~~--------------~~~~~---~~~~~~~~~~Dl 61 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQ-QGFDIGITWHSDE--EGAKETA--------------EEVRS---HGVRAEIRQLDL 61 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCCh--HHHHHHH--------------HHHHh---cCCceEEEEccC
Confidence 45799999999999999999886 5888876554332 1111110 11110 001233 34688
Q ss_pred CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 114 T~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
+.++.....+..+.+. .+.+|+-..|.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (256)
T PRK12743 62 SDLPEGAQALDKLIQRLGRIDVLVNNAGA 90 (256)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 8888887777666543 46788877664
No 446
>PRK07326 short chain dehydrogenase; Provisional
Probab=88.40 E-value=2.9 Score=36.60 Aligned_cols=82 Identities=20% Similarity=0.213 Sum_probs=48.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT 114 (300)
.+|.|+|++|.+|+.+++.+.+ .+.+++.+ +++. ....++. +++.+ ...++ +..|.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~-~g~~V~~~-~r~~--~~~~~~~--------------~~l~~----~~~~~~~~~D~~ 64 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLA-EGYKVAIT-ARDQ--KELEEAA--------------AELNN----KGNVLGLAADVR 64 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHH-CCCEEEEe-eCCH--HHHHHHH--------------HHHhc----cCcEEEEEccCC
Confidence 5799999999999999999886 48886654 4332 1111110 11110 01233 334777
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPH 139 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG 139 (300)
.++...+.+..+.+. ++++|+=..|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~d~vi~~ag 91 (237)
T PRK07326 65 DEADVQRAVDAIVAAFGGLDVLIANAG 91 (237)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 777776666655443 5777776554
No 447
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.38 E-value=4.2 Score=38.64 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=51.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc---cee---cCHHHHHhcccccCCccE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVM---SDLTMVLGSISQSKARAV 109 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~---~dl~~~l~~~~~~~~~DV 109 (300)
-+|.|.|++|.+|...++.++ ..+.++++...... ....+. ..+|. ..+ +++.+.+.+.. ...+|+
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk-~~G~~Vi~~~~~~~---k~~~~~---~~lGa~~vi~~~~~~~~~~~i~~~~-~~gvD~ 231 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAK-LHGCYVVGSAGSSQ---KVDLLK---NKLGFDEAFNYKEEPDLDAALKRYF-PEGIDI 231 (348)
T ss_pred CEEEEecCccHHHHHHHHHHH-HcCCEEEEEcCCHH---HHHHHH---HhcCCCEEEECCCcccHHHHHHHHC-CCCcEE
Confidence 369999999999999998765 46888776543221 111110 01222 112 13444332111 125799
Q ss_pred EEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250 110 VIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vVigTT 138 (300)
++|++-.......+......|.=+++|..
T Consensus 232 v~d~vG~~~~~~~~~~l~~~G~iv~~G~~ 260 (348)
T PLN03154 232 YFDNVGGDMLDAALLNMKIHGRIAVCGMV 260 (348)
T ss_pred EEECCCHHHHHHHHHHhccCCEEEEECcc
Confidence 99988765444444444445554556643
No 448
>PRK07024 short chain dehydrogenase; Provisional
Probab=88.32 E-value=2.9 Score=37.48 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=51.4
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID 112 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVID 112 (300)
|+.+|.|.|++|.+|+.+++.+.+ .+.+++. ++++. ....++. +.+. ...++. +.+|
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~-~G~~v~~-~~r~~--~~~~~~~---------------~~~~---~~~~~~~~~~D 58 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYAR-QGATLGL-VARRT--DALQAFA---------------ARLP---KAARVSVYAAD 58 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------Hhcc---cCCeeEEEEcC
Confidence 356899999999999999999875 5777664 44431 1111110 1110 000122 4568
Q ss_pred cCCchhHHHHHHHHHH-cC-CCEEEeCCCC
Q 022250 113 FTDASTVYDNVKQATA-FG-MRSVVYVPHI 140 (300)
Q Consensus 113 fT~p~~~~~~~~~al~-~G-~~vVigTTG~ 140 (300)
++.++...+.+..+.+ .| +++++=..|.
T Consensus 59 l~~~~~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 59 VRDADALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 8888887776665544 33 6888776653
No 449
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=88.21 E-value=1.4 Score=42.22 Aligned_cols=30 Identities=30% Similarity=0.615 Sum_probs=24.4
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
||+|+|+ |..|+.+++.+.+ -+++++.+ |.
T Consensus 1 kililG~-g~~~~~l~~aa~~-~G~~v~~~-d~ 30 (380)
T TIGR01142 1 RVLLLGS-GELGKEVAIEAQR-LGVEVIAV-DR 30 (380)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCEEEEE-eC
Confidence 7999997 9999999998775 58887654 44
No 450
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=88.19 E-value=2.1 Score=40.48 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=28.0
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
.+||.|.|++|-+|+.+++.+.+ .+.++++..+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~-~G~~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQ-RGYTVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence 36899999999999999999885 5788887654
No 451
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.97 E-value=5 Score=38.42 Aligned_cols=147 Identities=16% Similarity=0.080 Sum_probs=73.0
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCC-CCccee-c----CHHHHHhcccccCCccEE
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVM-S----DLTMVLGSISQSKARAVV 110 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v~-~----dl~~~l~~~~~~~~~DVV 110 (300)
+|+|+|+ |-||-..+..+... +..-+-++|... .. -+++ .+ .+..+. + +..+.+.+......+|++
T Consensus 171 ~V~V~Ga-GpIGLla~~~a~~~-Ga~~Viv~d~~~--~R-l~~A---~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 171 TVVVVGA-GPIGLLAIALAKLL-GASVVIVVDRSP--ER-LELA---KEAGGADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred EEEEECC-CHHHHHHHHHHHHc-CCceEEEeCCCH--HH-HHHH---HHhCCCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 6999998 99999988766644 444444557532 11 1111 11 122211 1 111111110011258999
Q ss_pred EEcCC-chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeE-E
Q 022250 111 IDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVE-I 188 (300)
Q Consensus 111 IDfT~-p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~die-I 188 (300)
||+|- +.+..+.+..+...|.=+++|+++-.... .....+..+ ++.+.=+-+ ...-.-+.++.+.++.-..|.+ +
T Consensus 243 ie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~-~~~~~~~~k-el~l~gs~~-~~~~~~~~~~~~ll~~g~i~~~~l 319 (350)
T COG1063 243 IEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIP-LPAGLVVSK-ELTLRGSLR-PSGREDFERALDLLASGKIDPEKL 319 (350)
T ss_pred EECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCc-cCHHHHHhc-ccEEEeccC-CCCcccHHHHHHHHHcCCCChhHc
Confidence 99995 44455555666667777888988654211 112222222 244443312 1122245556666654344544 3
Q ss_pred EEccCCC
Q 022250 189 VESRPNA 195 (300)
Q Consensus 189 iE~Hh~K 195 (300)
+ +|.-+
T Consensus 320 i-t~~~~ 325 (350)
T COG1063 320 I-THRLP 325 (350)
T ss_pred e-Eeecc
Confidence 3 56544
No 452
>COG2403 Predicted GTPase [General function prediction only]
Probab=87.93 E-value=2.3 Score=41.53 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=62.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC--cch--hhhhcCcCCCCcceec-----CHHHHHhcccccC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDI--GMVCDMEQPLEIPVMS-----DLTMVLGSISQSK 105 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g--~d~--~~~~g~~~~~gv~v~~-----dl~~~l~~~~~~~ 105 (300)
+.||.+.|+.|+==-..=.++...+.++++++......| ... .++.|...+.|+|++. ++++++. +.
T Consensus 6 ~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ir----e~ 81 (449)
T COG2403 6 RKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIR----EK 81 (449)
T ss_pred ceeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHHH----Hc
Confidence 589999998655333333445667888888776521110 000 1233333567888863 4666665 47
Q ss_pred Ccc-EEEEcC--CchhHHHHHHHHHHcCCCEE
Q 022250 106 ARA-VVIDFT--DASTVYDNVKQATAFGMRSV 134 (300)
Q Consensus 106 ~~D-VVIDfT--~p~~~~~~~~~al~~G~~vV 134 (300)
++| +|+|+| +++....++...+..|....
T Consensus 82 ~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~ 113 (449)
T COG2403 82 DVDIVVLAYSDVSYEHVFRIASRVLSAGADFK 113 (449)
T ss_pred CCCeEEEEcccCCHHHHHHHHHHHHhCCceeE
Confidence 899 999999 68888999999999887655
No 453
>PRK09186 flagellin modification protein A; Provisional
Probab=87.88 E-value=3.7 Score=36.42 Aligned_cols=30 Identities=37% Similarity=0.377 Sum_probs=25.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (300)
.+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus 5 k~vlItGas~giG~~~a~~l~~-~g~~v~~~ 34 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILE-AGGIVIAA 34 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEEE
Confidence 5799999999999999999875 57887765
No 454
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=87.82 E-value=2.4 Score=39.38 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=26.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (300)
..+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~-~G~~V~~~~ 36 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLF-RGYTINATV 36 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence 36899999999999999998875 578877643
No 455
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.81 E-value=3.8 Score=35.92 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=49.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT 114 (300)
-+|.|.|++|.+|+.+++.+.+ .+.+++.. +++. ....++ .+.+.. ..... +..|++
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~-~G~~V~~~-~r~~--~~~~~~---------------~~~~~~---~~~~~~~~~Dl~ 63 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALK-EGAQVCIN-SRNE--NKLKRM---------------KKTLSK---YGNIHYVVGDVS 63 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHH---------------HHHHHh---cCCeEEEECCCC
Confidence 4799999999999999998875 58888764 3321 111111 011100 01222 345788
Q ss_pred CchhHHHHHHHHHH--cCCCEEEeCCC
Q 022250 115 DASTVYDNVKQATA--FGMRSVVYVPH 139 (300)
Q Consensus 115 ~p~~~~~~~~~al~--~G~~vVigTTG 139 (300)
.++...+.++.+.+ .+++.++-+.|
T Consensus 64 ~~~~~~~~~~~~~~~~~~id~ii~~ag 90 (238)
T PRK05786 64 STESARNVIEKAAKVLNAIDGLVVTVG 90 (238)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 88877777666544 35677776664
No 456
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=87.73 E-value=3.8 Score=34.83 Aligned_cols=83 Identities=17% Similarity=0.067 Sum_probs=47.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-||.|+|+ |++|...++.+.+ .+.+++ ++++.. .++..++. .+.. ...+++.- -.++|+||-.|
T Consensus 14 ~~vlVvGG-G~va~rka~~Ll~-~ga~V~-VIsp~~-~~~l~~l~------~i~~~~~~~~~~d-----l~~a~lViaaT 78 (157)
T PRK06719 14 KVVVIIGG-GKIAYRKASGLKD-TGAFVT-VVSPEI-CKEMKELP------YITWKQKTFSNDD-----IKDAHLIYAAT 78 (157)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCcc-CHHHHhcc------CcEEEecccChhc-----CCCceEEEECC
Confidence 68999998 9999999998875 566666 345432 22222211 1111 12222211 14678888888
Q ss_pred CchhHHHHHHHHHHcCCCE
Q 022250 115 DASTVYDNVKQATAFGMRS 133 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~v 133 (300)
.-+.....+..+++.+.++
T Consensus 79 ~d~e~N~~i~~~a~~~~~v 97 (157)
T PRK06719 79 NQHAVNMMVKQAAHDFQWV 97 (157)
T ss_pred CCHHHHHHHHHHHHHCCcE
Confidence 7666655555444545433
No 457
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.69 E-value=0.88 Score=40.49 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=52.7
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf 113 (300)
+..|.|.|++|.+|+.+++.+.+ .+.+++.+..... ...... .+++-.. ..+.+ +-.|+
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~-~g~~vi~~~r~~~--~~~~~~--------------~~~~~~~---~~~~~~~~~D~ 61 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAA-AGFDLAINDRPDD--EELAAT--------------QQELRAL---GVEVIFFPADV 61 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHH-CCCEEEEEecCch--hHHHHH--------------HHHHHhc---CCceEEEEecC
Confidence 45689999999999999999885 4788876432211 000000 0111000 01233 35788
Q ss_pred CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 114 T~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
+.++...+.+..+.+. .+.+|+-..|.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 62 ADLSAHEAMLDAAQAAWGRIDCLVNNAGV 90 (256)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 9888887777766554 57888877764
No 458
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=87.69 E-value=1.3 Score=38.01 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=42.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
-+|+++|| |.=|..++..+--.++. |..++|.++ ...|.+. +-.++||.+ .+++.+ ..+|++|.++.
T Consensus 69 k~I~~yGA-~~kg~tlln~~g~~~~~-I~~vvD~np--~K~G~~~---PGt~ipI~~-p~~l~~-----~~pd~vivlaw 135 (160)
T PF08484_consen 69 KRIAGYGA-GAKGNTLLNYFGLDNDL-IDYVVDDNP--LKQGKYL---PGTHIPIVS-PEELKE-----RKPDYVIVLAW 135 (160)
T ss_dssp --EEEE----SHHHHHHHHHT--TTT-S--EEES-G--GGTTEE----TTT--EEEE-GGG--S-----S--SEEEES-G
T ss_pred CEEEEECc-chHHHHHHHHhCCCcce-eEEEEeCCh--hhcCccc---CCCCCeECC-HHHHhh-----CCCCEEEEcCh
Confidence 57999999 77799988877544443 667788543 2223333 334677764 456654 57899887652
Q ss_pred --chhHHHHHHHHHHcCCCEEE
Q 022250 116 --ASTVYDNVKQATAFGMRSVV 135 (300)
Q Consensus 116 --p~~~~~~~~~al~~G~~vVi 135 (300)
.+...+.++...+.|-.+|+
T Consensus 136 ~y~~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 136 NYKDEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp GGHHHHHHHTHHHHHTT-EEEE
T ss_pred hhHHHHHHHHHHHHhcCCEEEE
Confidence 34445555666677776665
No 459
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=87.52 E-value=7.8 Score=37.29 Aligned_cols=92 Identities=14% Similarity=0.083 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCchh-HHHHHH
Q 022250 48 GRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST-VYDNVK 124 (300)
Q Consensus 48 G~~i~~~i~~~~~~eLvg~vd~~~~--g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~-~~~~~~ 124 (300)
|..++..+.+ .++++. ++|++.. ..+..+.+ ...|+.+.+|..+++. ++|+||-+.++.. ..+.+.
T Consensus 32 G~~MA~~La~-aG~~V~-v~Dr~~~~l~~~~~~~l---~~~Gi~~asd~~eaa~------~ADvVIlaVP~~~~v~~Vl~ 100 (342)
T PRK12557 32 GSRMAIEFAE-AGHDVV-LAEPNRSILSEELWKKV---EDAGVKVVSDDAEAAK------HGEIHILFTPFGKKTVEIAK 100 (342)
T ss_pred HHHHHHHHHh-CCCeEE-EEECCHHHhhHHHHHHH---HHCCCEEeCCHHHHHh------CCCEEEEECCCcHHHHHHHH
Confidence 4445555543 466655 4565421 00011111 2456777778888773 7899998877666 455544
Q ss_pred HHH---HcCCCEEEeCCCCCHHHH-HHHHHH
Q 022250 125 QAT---AFGMRSVVYVPHIQLETV-SALSAF 151 (300)
Q Consensus 125 ~al---~~G~~vVigTTG~~~e~~-~~L~~~ 151 (300)
..+ ..|.-++..+|+ +.... +.+.+.
T Consensus 101 ~L~~~L~~g~IVId~ST~-~~~~~s~~l~~~ 130 (342)
T PRK12557 101 NILPHLPENAVICNTCTV-SPVVLYYSLEGE 130 (342)
T ss_pred HHHhhCCCCCEEEEecCC-CHHHHHHHHHHH
Confidence 333 345444443444 44443 445444
No 460
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=87.40 E-value=3.9 Score=39.46 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=22.8
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCc-EEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAG 65 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg 65 (300)
..+|.|+|++|..|+..++.+.. -++ .+++
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~-~~~~~v~t 188 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAKH-AGAIKVVT 188 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHHh-cCCcEEEE
Confidence 36799999999999999997664 443 3443
No 461
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=87.38 E-value=1.2 Score=44.42 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.3
Q ss_pred cceEEEEcCCchHHHHHHHHHHhc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKA 58 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~ 58 (300)
++||+|+|++|.+|..++-.+...
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 589999998899999999988754
No 462
>PRK05586 biotin carboxylase; Validated
Probab=87.36 E-value=3.8 Score=40.50 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=28.1
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
|+.||+|+|. |.+|..+++.+.+ -+++.+++.+.
T Consensus 1 ~~kkvli~g~-G~~~~~~~~aa~~-lG~~~v~v~~~ 34 (447)
T PRK05586 1 MFKKILIANR-GEIAVRIIRACRE-MGIETVAVYSE 34 (447)
T ss_pred CcceEEEECC-cHHHHHHHHHHHH-cCCcEEEEcCh
Confidence 4579999997 9999999998875 48888887553
No 463
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.21 E-value=2.3 Score=40.25 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=49.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI 111 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVI 111 (300)
-+|.|+|+ |.+|...++.+.. .+.+++++ ++.....+-.+++ .++|.... ++.++ .. ....+|+||
T Consensus 174 ~~vlI~G~-G~vG~~a~q~ak~-~G~~vi~~-~~~~~~~~~~~~~---~~~Ga~~v~~~~~~~~~-~~---~~~~~d~vi 243 (355)
T cd08230 174 RRALVLGA-GPIGLLAALLLRL-RGFEVYVL-NRRDPPDPKADIV---EELGATYVNSSKTPVAE-VK---LVGEFDLII 243 (355)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-cCCeEEEE-ecCCCCHHHHHHH---HHcCCEEecCCccchhh-hh---hcCCCCEEE
Confidence 37999997 9999999987664 57776664 3210001111121 12332211 12222 11 013689999
Q ss_pred EcCCc-hhHHHHHHHHHHcCCCEEEeCC
Q 022250 112 DFTDA-STVYDNVKQATAFGMRSVVYVP 138 (300)
Q Consensus 112 DfT~p-~~~~~~~~~al~~G~~vVigTT 138 (300)
|++-. ....+.+......|.=+.+|.+
T Consensus 244 d~~g~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 244 EATGVPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence 98864 3444444444455665567765
No 464
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=87.21 E-value=4.7 Score=39.97 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=48.5
Q ss_pred cceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec-CHHHHHhcccccCCccEEEE
Q 022250 35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVID 112 (300)
..||.|+|. |+.|.. +++.+. ..+.++.+ .|.... ....++ .+.|+.++. ...+.+ .++|+||-
T Consensus 7 ~~~v~viG~-G~sG~s~~a~~L~-~~G~~V~~-~D~~~~-~~~~~l----~~~gi~~~~~~~~~~~------~~~d~vv~ 72 (461)
T PRK00421 7 IKRIHFVGI-GGIGMSGLAEVLL-NLGYKVSG-SDLKES-AVTQRL----LELGAIIFIGHDAENI------KDADVVVY 72 (461)
T ss_pred CCEEEEEEE-chhhHHHHHHHHH-hCCCeEEE-ECCCCC-hHHHHH----HHCCCEEeCCCCHHHC------CCCCEEEE
Confidence 358999998 999999 687766 56888764 664321 112222 234665542 222334 36898874
Q ss_pred cCC-chhHHHHHHHHHHcCCCEE
Q 022250 113 FTD-ASTVYDNVKQATAFGMRSV 134 (300)
Q Consensus 113 fT~-p~~~~~~~~~al~~G~~vV 134 (300)
-.. |. ..+.+..|.++|+|++
T Consensus 73 spgi~~-~~~~~~~a~~~~i~i~ 94 (461)
T PRK00421 73 SSAIPD-DNPELVAARELGIPVV 94 (461)
T ss_pred CCCCCC-CCHHHHHHHHCCCcEE
Confidence 321 22 2334455556666654
No 465
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=87.19 E-value=2.3 Score=41.58 Aligned_cols=91 Identities=12% Similarity=0.172 Sum_probs=48.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHhcccccCCccEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
|||+|+|. |.-+.++++.+.+.. ..+..++++...|. .... ...-+. -+.|.+.+++ +.+..++|+++-.+
T Consensus 1 ~kiliiG~-G~~~~~l~~~~~~~~-~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~d~~~l~~-~~~~~~id~vi~~~ 72 (423)
T TIGR00877 1 MKVLVIGN-GGREHALAWKLAQSP-LVKYVYVAPGNAGT--ARLA---KNKNVAISITDIEALVE-FAKKKKIDLAVIGP 72 (423)
T ss_pred CEEEEECC-ChHHHHHHHHHHhCC-CccEEEEECCCHHH--hhhc---ccccccCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence 69999997 888999999988753 33333344332111 1000 001111 1256555543 22235788887544
Q ss_pred CchhHHHHHHHHHHcCCCEE
Q 022250 115 DASTVYDNVKQATAFGMRSV 134 (300)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vV 134 (300)
.-......+..+.++|++++
T Consensus 73 e~~l~~~~~~~l~~~gi~~~ 92 (423)
T TIGR00877 73 EAPLVLGLVDALEEAGIPVF 92 (423)
T ss_pred chHHHHHHHHHHHHCCCeEE
Confidence 22222344556667787765
No 466
>PRK12939 short chain dehydrogenase; Provisional
Probab=87.18 E-value=6.9 Score=34.39 Aligned_cols=84 Identities=20% Similarity=0.282 Sum_probs=52.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT 114 (300)
.+|.|.|++|.+|+.+++.+.+ .+.+++.. +++. ...... .+++... ..+++ +.+|++
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~-~G~~v~~~-~r~~--~~~~~~--------------~~~~~~~---~~~~~~~~~Dl~ 66 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAE-AGATVAFN-DGLA--AEAREL--------------AAALEAA---GGRAHAIAADLA 66 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHH-cCCEEEEE-eCCH--HHHHHH--------------HHHHHhc---CCcEEEEEccCC
Confidence 6799999999999999999875 57887765 4331 111111 0111100 01233 355888
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
.++.....+..+.+. ++.+|+-..|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 67 DPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 888877777666553 67888877654
No 467
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.15 E-value=5 Score=35.80 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=50.3
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT 114 (300)
.++.|.|++|.+|+.+++.+.+ .+.+++....+.. +. .+++.. ... -+..|.+
T Consensus 8 k~~lItGas~gIG~~~a~~l~~-~G~~v~~~~~~~~---~~-----------------~~~l~~-----~~~~~~~~Dl~ 61 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLR-EGAKVAVLYNSAE---NE-----------------AKELRE-----KGVFTIKCDVG 61 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCcH---HH-----------------HHHHHh-----CCCeEEEecCC
Confidence 5799999999999999999875 5777765432221 10 011111 112 2456888
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
.++...+.+..+.+. ++.+|+=..|.
T Consensus 62 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 62 NRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 888887777766554 57778766553
No 468
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=87.12 E-value=4.5 Score=40.03 Aligned_cols=117 Identities=13% Similarity=0.034 Sum_probs=57.7
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID 112 (300)
++|||.|+|. |.==.+++..+.+++....+.+ .+...|.. ... ....+++ ..|.+++++ .++..++|.||-
T Consensus 3 ~~~kvLviG~-g~rehal~~~~~~~~~~~~~~~-~pgn~g~~--~~~---~~~~~~~~~~d~~~l~~-~a~~~~iD~Vv~ 74 (426)
T PRK13789 3 VKLKVLLIGS-GGRESAIAFALRKSNLLSELKV-FPGNGGFP--DDE---LLPADSFSILDKSSVQS-FLKSNPFDLIVV 74 (426)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHhCCCCCEEEE-ECCchHHh--ccc---cccccCcCcCCHHHHHH-HHHHcCCCEEEE
Confidence 4589999997 6545677888877775533322 22221110 000 0011122 356666554 223457898873
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeCCCCC--HH-HHHHHHHHhhhCCCeE
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQ--LE-TVSALSAFCDKASMGC 159 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigTTG~~--~e-~~~~L~~~a~~~~i~i 159 (300)
..........+..+.+.|+|++ |.+-.. .+ .....+++.+++|+|.
T Consensus 75 g~E~~l~~glad~~~~~Gip~~-Gp~~~aa~le~dK~~~K~~l~~~gIpt 123 (426)
T PRK13789 75 GPEDPLVAGFADWAAELGIPCF-GPDSYCAQVEGSKHFAKSLMKEAKIPT 123 (426)
T ss_pred CCchHHHHHHHHHHHHcCCCcC-CCHHHHHHHHcCHHHHHHHHHHcCCCC
Confidence 2211122345566778888865 432110 00 1223445556666664
No 469
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.04 E-value=5.5 Score=37.74 Aligned_cols=83 Identities=25% Similarity=0.306 Sum_probs=49.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT 114 (300)
.+|.|.|++|.+|+.+++.+.+ .+.+++. ++++. ....++. +++... ..++ -+..|.+
T Consensus 9 k~vlITGas~gIG~~la~~la~-~G~~Vvl-~~R~~--~~l~~~~--------------~~l~~~---g~~~~~v~~Dv~ 67 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFAR-RGAKVVL-LARGE--EGLEALA--------------AEIRAA---GGEALAVVADVA 67 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHc---CCcEEEEEecCC
Confidence 5799999999999999999875 5788765 34431 1111110 111110 0111 2456888
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPH 139 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG 139 (300)
.++.+.+.+..+.+. ++++++-..|
T Consensus 68 d~~~v~~~~~~~~~~~g~iD~lInnAg 94 (334)
T PRK07109 68 DAEAVQAAADRAEEELGPIDTWVNNAM 94 (334)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence 888877776665543 5778776554
No 470
>PRK06139 short chain dehydrogenase; Provisional
Probab=86.94 E-value=4.9 Score=38.12 Aligned_cols=81 Identities=27% Similarity=0.275 Sum_probs=51.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID 112 (300)
..|.|.|++|.+|+.+++.+.+ .+.+|+. ++++. ....++. +++-+ ...+ +..|
T Consensus 8 k~vlITGAs~GIG~aia~~la~-~G~~Vvl-~~R~~--~~l~~~~--------------~~~~~-----~g~~~~~~~~D 64 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFAR-RGARLVL-AARDE--EALQAVA--------------EECRA-----LGAEVLVVPTD 64 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEee
Confidence 4699999999999999999885 5788764 44432 1111110 11111 1222 3468
Q ss_pred cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250 113 FTDASTVYDNVKQATAF--GMRSVVYVPH 139 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~--G~~vVigTTG 139 (300)
.+.++...+.+..+.+. ++++++-..|
T Consensus 65 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 65 VTDADQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 88888887777766654 5788877665
No 471
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=86.93 E-value=3.9 Score=38.99 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=66.4
Q ss_pred ceEEEEcCCchHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (300)
-.|.|..|+.|.+..++-.+. .....++||+....+ .+..+-+|+ --.+..|++++++-. ..+=|+|||+
T Consensus 137 ~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N--~~Fve~lg~--Yd~V~~Yd~i~~l~~-----~~~~v~VDfa 207 (314)
T PF11017_consen 137 AQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARN--VAFVESLGC--YDEVLTYDDIDSLDA-----PQPVVIVDFA 207 (314)
T ss_pred cEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcc--hhhhhccCC--ceEEeehhhhhhccC-----CCCEEEEECC
Confidence 369999999999999999988 677899999887543 222222221 113455788887743 4667999999
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCCCCH
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPHIQL 142 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG~~~ 142 (300)
-...+...+..-+.. ...+.||-|.++.
T Consensus 208 G~~~~~~~Lh~~l~d~l~~~~~VG~th~~~ 237 (314)
T PF11017_consen 208 GNGEVLAALHEHLGDNLVYSCLVGATHWDK 237 (314)
T ss_pred CCHHHHHHHHHHHhhhhhEEEEEEccCccc
Confidence 766665555443332 2466788887754
No 472
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=86.92 E-value=5.2 Score=37.86 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=54.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~------~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (300)
|||.|+|+ |.||..+.-.+.+.. ..+.-+...+. .|-.+....+ ..........+.+. + .++|+
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~-~------~~~Dl 70 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGG-NFTTPVVAATDAEA-L------GPADL 70 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCC-ccccccccccChhh-c------CCCCE
Confidence 68999998 999999999888665 33333332210 1211111111 00001111222222 2 47899
Q ss_pred EEEcCCchhHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHHhhhC
Q 022250 110 VIDFTDASTVYDNVKQATAF---GMRSVVYVPHIQLETVSALSAFCDKA 155 (300)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~---G~~vVigTTG~~~e~~~~L~~~a~~~ 155 (300)
||-++-.-.+.+.+...... ...|++==-|+.-++ .|.+...+.
T Consensus 71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~~ 117 (307)
T COG1893 71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPKE 117 (307)
T ss_pred EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCcc
Confidence 99887554444444433332 323333223775433 666666553
No 473
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.79 E-value=2 Score=44.26 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=26.7
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
-.|.|.|++|++|+.+++.+.+ .+++++++..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk-~G~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLK-LGFRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCeEEEEeC
Confidence 4699999999999999999875 5888877543
No 474
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=86.78 E-value=11 Score=37.13 Aligned_cols=159 Identities=15% Similarity=0.079 Sum_probs=82.7
Q ss_pred ceEEEEcCCchHHHHHHH--HHH---hcCCcEEEEEEecCCC-----Ccchhhhh-cCcCCCCcceecCHHHHHhccccc
Q 022250 36 IKVIINGAVKEIGRAAVI--AVT---KARGMEVAGAIDSHSV-----GEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQS 104 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~--~i~---~~~~~eLvg~vd~~~~-----g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~ 104 (300)
+||+|+|+ |.||....- .+. ...+.+|+ .+|.+.. ..+....+ .......+..++|+++++
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal------ 72 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREAL------ 72 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHh------
Confidence 58999998 999998443 343 34455654 4675320 11111111 110123455678998888
Q ss_pred CCccEEEEcCCchhHHH---HHHHHHHcCCCEEEeCC-C---CC-----HHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250 105 KARAVVIDFTDASTVYD---NVKQATAFGMRSVVYVP-H---IQ-----LETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (300)
Q Consensus 105 ~~~DVVIDfT~p~~~~~---~~~~al~~G~~vVigTT-G---~~-----~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll 172 (300)
.++|+||....+..... .-+..+++|+---++-| | +. -....+|.+..++. .|=.+.-||+=-+.++
T Consensus 73 ~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~-~p~a~~i~~tNPv~i~ 151 (423)
T cd05297 73 DGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEEL-CPDAWLLNYANPMAEL 151 (423)
T ss_pred cCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHH-CCCCEEEEcCChHHHH
Confidence 48999997655433322 22466777765333323 2 21 11222333333321 1234445677677777
Q ss_pred HHHHHHhccCCCCeEEEEccCCCCCCCchHHHHHHHHHH
Q 022250 173 QQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLS 211 (300)
Q Consensus 173 ~~~a~~~~~~~~dieIiE~Hh~K~DaPSGTA~~l~~~i~ 211 (300)
.+++....+ +.++-+= |.|.++...+++.+.
T Consensus 152 t~~~~k~~~----~rviG~c----~~~~~~~~~~a~~l~ 182 (423)
T cd05297 152 TWALNRYTP----IKTVGLC----HGVQGTAEQLAKLLG 182 (423)
T ss_pred HHHHHHhCC----CCEEEEC----CcHHHHHHHHHHHhC
Confidence 776655542 3444442 226667777777653
No 475
>PRK08219 short chain dehydrogenase; Provisional
Probab=86.75 E-value=0.92 Score=39.41 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=25.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (300)
|+++.|.|++|.+|+.+++.+.+. .+++++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~ 32 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--HTLLLG 32 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--CCEEEE
Confidence 568999999999999999998865 676654
No 476
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.71 E-value=5.4 Score=38.28 Aligned_cols=94 Identities=20% Similarity=0.196 Sum_probs=52.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
.+|+|+|+ |.+|..-++.... =++++++ +|+.. + .-+++++. ..+|.-|||+-
T Consensus 183 ~~vgI~Gl-GGLGh~aVq~AKA-MG~rV~v-is~~~--~------------------kkeea~~~----LGAd~fv~~~~ 235 (360)
T KOG0023|consen 183 KWVGIVGL-GGLGHMAVQYAKA-MGMRVTV-ISTSS--K------------------KKEEAIKS----LGADVFVDSTE 235 (360)
T ss_pred cEEEEecC-cccchHHHHHHHH-hCcEEEE-EeCCc--h------------------hHHHHHHh----cCcceeEEecC
Confidence 68999998 6699999886654 5888886 44321 0 11344432 35666666663
Q ss_pred chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeE
Q 022250 116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 159 (300)
Q Consensus 116 p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~i 159 (300)
-..-.+.+..++.-+++-|+-- ++..++.+..+.+.+|.-+
T Consensus 236 d~d~~~~~~~~~dg~~~~v~~~---a~~~~~~~~~~lk~~Gt~V 276 (360)
T KOG0023|consen 236 DPDIMKAIMKTTDGGIDTVSNL---AEHALEPLLGLLKVNGTLV 276 (360)
T ss_pred CHHHHHHHHHhhcCcceeeeec---cccchHHHHHHhhcCCEEE
Confidence 3334445555556665555421 2222334555555555433
No 477
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=86.67 E-value=0.95 Score=42.21 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=26.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
.+|.|+|+ |.+|++++..+.+ .+++=+-+++++
T Consensus 126 k~vlvlGa-GGaarai~~aL~~-~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGA-GGTSRAAVYALAS-LGVTDITVINRN 158 (282)
T ss_pred ceEEEEcC-cHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 58999998 9999999998875 466555567764
No 478
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=86.64 E-value=1.4 Score=43.15 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.2
Q ss_pred cceEEEEcCCchHHHHHHHHHHhc
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKA 58 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~ 58 (300)
++||+|+|++|++|..++-.+...
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 599999999899999999988654
No 479
>PRK05872 short chain dehydrogenase; Provisional
Probab=86.63 E-value=8.4 Score=35.52 Aligned_cols=81 Identities=26% Similarity=0.366 Sum_probs=51.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE---EEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---VID 112 (300)
.+|.|.|++|.+|+.+++.+.+ .+.+++. ++++. ..+.++ .+.+. ...++ ..|
T Consensus 10 k~vlItGas~gIG~~ia~~l~~-~G~~V~~-~~r~~--~~l~~~---------------~~~l~-----~~~~~~~~~~D 65 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHA-RGAKLAL-VDLEE--AELAAL---------------AAELG-----GDDRVLTVVAD 65 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHhc-----CCCcEEEEEec
Confidence 5799999999999999999875 5777654 34321 111111 11111 12222 268
Q ss_pred cCCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 113 FTDASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
.+.++.+.+.+..+.+. ++++||-..|.
T Consensus 66 v~d~~~v~~~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 66 VTDLAAMQAAAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 88888887777766553 57888877663
No 480
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.48 E-value=4.1 Score=35.98 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=26.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
.++.|.|++|.+|+.+++.+.+ .+.+++...+
T Consensus 6 k~ilItGas~gIG~~la~~l~~-~G~~vv~~~~ 37 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAR-EGARVVVNYH 37 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHH-CCCeEEEEcC
Confidence 4799999999999999998874 5788775443
No 481
>PRK06483 dihydromonapterin reductase; Provisional
Probab=86.43 E-value=9.2 Score=33.56 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=49.2
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID 112 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVID 112 (300)
|+.++.|.|++|.+|+.+++.+.+ .+.+++.. +++. .+.. +++-. .... +..|
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~-~r~~--~~~~-----------------~~~~~-----~~~~~~~~D 54 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLA-QGQPVIVS-YRTH--YPAI-----------------DGLRQ-----AGAQCIQAD 54 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHH-CCCeEEEE-eCCc--hhHH-----------------HHHHH-----cCCEEEEcC
Confidence 346799999999999999998875 57787754 4322 1100 11100 1111 3467
Q ss_pred cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250 113 FTDASTVYDNVKQATAF--GMRSVVYVPH 139 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~--G~~vVigTTG 139 (300)
.+.++...+.+....+. ++.+++-..|
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag 83 (236)
T PRK06483 55 FSTNAGIMAFIDELKQHTDGLRAIIHNAS 83 (236)
T ss_pred CCCHHHHHHHHHHHHhhCCCccEEEECCc
Confidence 77777777766665542 3777776655
No 482
>PRK07806 short chain dehydrogenase; Provisional
Probab=86.36 E-value=8.3 Score=34.01 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=49.8
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT 114 (300)
.++.|.|++|.+|+.+++.+.+ .+.+++....... .....+ .+.+.. ...+.. +..|.+
T Consensus 7 k~vlItGasggiG~~l~~~l~~-~G~~V~~~~r~~~--~~~~~~---------------~~~l~~--~~~~~~~~~~D~~ 66 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAG-AGAHVVVNYRQKA--PRANKV---------------VAEIEA--AGGRASAVGADLT 66 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHH-CCCEEEEEeCCch--HhHHHH---------------HHHHHh--cCCceEEEEcCCC
Confidence 6799999999999999998875 5788776543211 001100 011110 001122 345788
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
.++.....+....+. ++++|+-..|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (248)
T PRK07806 67 DEESVAALMDTAREEFGGLDALVLNASG 94 (248)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 888776666655443 57787766654
No 483
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.35 E-value=2.1 Score=39.91 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=49.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID 112 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVID 112 (300)
-+|.|+|++|.+|+..++.+. ..+. ++++....+.....+.+..|. ..+..+ .++.+.+.+.. ...+|+++|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk-~~G~~~Vi~~~~s~~~~~~~~~~lGa---~~vi~~~~~~~~~~i~~~~-~~gvd~vid 230 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGR-LLGCSRVVGICGSDEKCQLLKSELGF---DAAINYKTDNVAERLRELC-PEGVDVYFD 230 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHH-HcCCCEEEEEcCCHHHHHHHHHhcCC---cEEEECCCCCHHHHHHHHC-CCCceEEEE
Confidence 479999999999999998766 4577 677765432100001110121 001111 23333332111 135788888
Q ss_pred cCCchhHHHHHHHHHHcCCCEEEeC
Q 022250 113 FTDASTVYDNVKQATAFGMRSVVYV 137 (300)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigT 137 (300)
++......+.+......|.=+.+|.
T Consensus 231 ~~g~~~~~~~~~~l~~~G~iv~~G~ 255 (345)
T cd08293 231 NVGGEISDTVISQMNENSHIILCGQ 255 (345)
T ss_pred CCCcHHHHHHHHHhccCCEEEEEee
Confidence 7765544344333334455444664
No 484
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=86.35 E-value=1.9 Score=40.58 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=23.2
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (300)
|+|+|+ |.+|..++-.+....-+.=+..+|..
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~ 32 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVN 32 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 589998 99999999888765433334467753
No 485
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=86.31 E-value=3.6 Score=38.78 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=25.4
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (300)
||.|+|+ |.+|..+++.+.. .++.=+-++|.
T Consensus 1 kVlVVGa-GGlG~eilknLal-~Gvg~I~IvD~ 31 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLAL-SGFRNIHVIDM 31 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCCeEEEECC
Confidence 6999998 9999999999874 57666667773
No 486
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=86.29 E-value=1.5 Score=43.98 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=76.9
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE-----ecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI-----DSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v-----d~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (300)
-.+|+|+|+ |..|++++..+. +.++.++-++ |.+..+.+. + .+-|.++ .++++++. .+|+
T Consensus 36 gKtIaIIGy-GSqG~AqAlNLr-dSGvnVvvglr~~~id~~~~s~~k---A---~~dGF~v-~~~~Ea~~------~ADv 100 (487)
T PRK05225 36 GKKIVIVGC-GAQGLNQGLNMR-DSGLDISYALRKEAIAEKRASWRK---A---TENGFKV-GTYEELIP------QADL 100 (487)
T ss_pred CCEEEEEcc-CHHHHHHhCCCc-cccceeEEeccccccccccchHHH---H---HhcCCcc-CCHHHHHH------hCCE
Confidence 378999998 999998887655 5577776333 211111111 1 1124444 57888884 7999
Q ss_pred EEEcCCchhHH---HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCe
Q 022250 110 VIDFTDASTVY---DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV 186 (300)
Q Consensus 110 VIDfT~p~~~~---~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~di 186 (300)
|+-.++-+... +.+...++.|.-+. =.-||+-... .... ..++-++.-+-=+.|-.+=..+.+ ...+
T Consensus 101 VviLlPDt~q~~v~~~i~p~LK~Ga~L~-fsHGFni~~~--~i~~--~~dvdVimvAPKgpG~~vR~~y~~-----G~Gv 170 (487)
T PRK05225 101 VINLTPDKQHSDVVRAVQPLMKQGAALG-YSHGFNIVEV--GEQI--RKDITVVMVAPKCPGTEVREEYKR-----GFGV 170 (487)
T ss_pred EEEcCChHHHHHHHHHHHhhCCCCCEEE-ecCCceeeeC--ceeC--CCCCcEEEECCCCCCchHHHHHhc-----CCCc
Confidence 99666443221 12222333333222 2347763211 1111 123555544444556433333322 1122
Q ss_pred EEEEccCCCCCCCchHHHHHHHHHHh
Q 022250 187 EIVESRPNARDFPSPDATQIANNLSN 212 (300)
Q Consensus 187 eIiE~Hh~K~DaPSGTA~~l~~~i~~ 212 (300)
--.=.=|.+.| |||.|..+|.+++.
T Consensus 171 p~l~AV~~~qD-~~g~a~~~ala~a~ 195 (487)
T PRK05225 171 PTLIAVHPEND-PKGEGMAIAKAWAA 195 (487)
T ss_pred eEEEEEeecCC-CCchHHHHHHHHHH
Confidence 11112123446 88999988888765
No 487
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=86.27 E-value=2.8 Score=34.46 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=23.4
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (300)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (300)
|+|+|+ |.||..++-.+.+ .+.++.-+..
T Consensus 1 I~I~G~-GaiG~~~a~~L~~-~g~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQ-AGHDVTLVSR 29 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHH-TTCEEEEEES
T ss_pred CEEECc-CHHHHHHHHHHHH-CCCceEEEEc
Confidence 789998 9999999998876 7777655443
No 488
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=86.20 E-value=6.7 Score=34.85 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=52.6
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-cCH-HHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDL-TMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl-~~~l~~~~~~~~~DVVIDf 113 (300)
-||.|+|+ |++|..-++.+.+ .+..++ ++++.. ..+..++. ....+... .++ .+.+ ..+|.||-.
T Consensus 10 k~vlVvGg-G~va~rk~~~Ll~-~ga~Vt-Vvsp~~-~~~l~~l~---~~~~i~~~~~~~~~~dl------~~~~lVi~a 76 (205)
T TIGR01470 10 RAVLVVGG-GDVALRKARLLLK-AGAQLR-VIAEEL-ESELTLLA---EQGGITWLARCFDADIL------EGAFLVIAA 76 (205)
T ss_pred CeEEEECc-CHHHHHHHHHHHH-CCCEEE-EEcCCC-CHHHHHHH---HcCCEEEEeCCCCHHHh------CCcEEEEEC
Confidence 48999998 9999998888875 466554 555532 12233332 12233221 111 2233 368888867
Q ss_pred CCc-hhHHHHHHHHHHcCCCEEE
Q 022250 114 TDA-STVYDNVKQATAFGMRSVV 135 (300)
Q Consensus 114 T~p-~~~~~~~~~al~~G~~vVi 135 (300)
|.- +........|.+.|+++-+
T Consensus 77 t~d~~ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 77 TDDEELNRRVAHAARARGVPVNV 99 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEE
Confidence 644 3456677788888988843
No 489
>PRK12742 oxidoreductase; Provisional
Probab=86.13 E-value=2 Score=37.72 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=25.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (300)
.+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus 7 k~vlItGasggIG~~~a~~l~~-~G~~v~~~ 36 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVT-DGANVRFT 36 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEe
Confidence 5799999999999999998875 57777654
No 490
>PRK07589 ornithine cyclodeaminase; Validated
Probab=85.95 E-value=2.1 Score=41.26 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=60.2
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCC--CCcceecCHHHHHhcccccCCccEEEEc
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVMSDLTMVLGSISQSKARAVVIDF 113 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~--~gv~v~~dl~~~l~~~~~~~~~DVVIDf 113 (300)
-+++|+|+ |..++.+++++..-..++=+-+++++. ..+..++..-.. ..+.+.+|+++++. ++|||+-.
T Consensus 130 ~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~--~~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIIvta 200 (346)
T PRK07589 130 RTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDP--AATAKLARNLAGPGLRIVACRSVAEAVE------GADIITTV 200 (346)
T ss_pred cEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCH--HHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEEe
Confidence 57999997 999999999888766777777787653 222222210011 23455789999984 79999977
Q ss_pred CCchhHHHHH-HHHHHcCCCEE-EeC
Q 022250 114 TDASTVYDNV-KQATAFGMRSV-VYV 137 (300)
Q Consensus 114 T~p~~~~~~~-~~al~~G~~vV-igT 137 (300)
|+.......+ ...++-|.||. ||+
T Consensus 201 T~S~~~~Pvl~~~~lkpG~hV~aIGs 226 (346)
T PRK07589 201 TADKTNATILTDDMVEPGMHINAVGG 226 (346)
T ss_pred cCCCCCCceecHHHcCCCcEEEecCC
Confidence 7422111222 24668898877 564
No 491
>PRK07023 short chain dehydrogenase; Provisional
Probab=85.91 E-value=1.1 Score=39.66 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=26.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (300)
|++|.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~-~G~~v~~~ 31 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQ-PGIAVLGV 31 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHh-CCCEEEEE
Confidence 46899999999999999999875 58887764
No 492
>PRK07478 short chain dehydrogenase; Provisional
Probab=85.91 E-value=6.2 Score=35.11 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=51.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT 114 (300)
.++.|.|++|.+|+.+++.+.+ .+.+++.. +++. .+..++. +++.+. ..++. +..|++
T Consensus 7 k~~lItGas~giG~~ia~~l~~-~G~~v~~~-~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D~~ 65 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAR-EGAKVVVG-ARRQ--AELDQLV--------------AEIRAE---GGEAVALAGDVR 65 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHHH--------------HHHHhc---CCcEEEEEcCCC
Confidence 4799999999999999999875 57787654 4321 1111110 111100 01122 345888
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG~ 140 (300)
.++...+.+..+.+. ++++|+-..|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 66 DEAYAKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 888887777766554 57888866653
No 493
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=85.90 E-value=8.7 Score=33.48 Aligned_cols=85 Identities=24% Similarity=0.234 Sum_probs=50.4
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT 114 (300)
.+|.|.|++|.+|+.+++.+.+ .+.+++.+..+.. .....+ .+++... ..... +-.|++
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~-~G~~v~~~~~~~~--~~~~~~--------------~~~~~~~---~~~~~~~~~Dl~ 65 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAA-QGANVVINYASSE--AGAEAL--------------VAEIGAL---GGKALAVQGDVS 65 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCch--hHHHHH--------------HHHHHhc---CCceEEEEcCCC
Confidence 5799999999999999999885 4788755543321 000000 0111100 01222 234888
Q ss_pred CchhHHHHHHHHHH--cCCCEEEeCCCC
Q 022250 115 DASTVYDNVKQATA--FGMRSVVYVPHI 140 (300)
Q Consensus 115 ~p~~~~~~~~~al~--~G~~vVigTTG~ 140 (300)
.++...+.+....+ .++..|+-..|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (248)
T PRK05557 66 DAESVERAVDEAKAEFGGVDILVNNAGI 93 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 88887776665554 257788776653
No 494
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=85.85 E-value=3.5 Score=45.26 Aligned_cols=96 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred eEEEEcCCchHHHHHHHHHHhcCCc-----EEEEEEe----------------cCCCCcchhhhh-----cCcCCCCcce
Q 022250 37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAID----------------SHSVGEDIGMVC-----DMEQPLEIPV 90 (300)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~-----eLvg~vd----------------~~~~g~d~~~~~-----g~~~~~gv~v 90 (300)
||.|+|| |.+|..+++.+. ..++ --+-++| ....|+.-.+.+ -+.+...+..
T Consensus 421 kVlvvGa-GGlG~e~lknLa-l~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~~ 498 (1008)
T TIGR01408 421 NIFLVGC-GAIGCEMLKNFA-LMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKIDA 498 (1008)
T ss_pred cEEEECC-ChHHHHHHHHHH-HhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Q ss_pred ecCH----------HHHHhcccccCCccEEEEcC-CchhHHHHHHHHHHcCCCEE-EeCCCC
Q 022250 91 MSDL----------TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSV-VYVPHI 140 (300)
Q Consensus 91 ~~dl----------~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vV-igTTG~ 140 (300)
+... ++.+ .++|+||++. ..++-.-.-..|.++++|+| .||.|+
T Consensus 499 ~~~~v~~~~e~i~~~~f~------~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~ 554 (1008)
T TIGR01408 499 HQNRVGPETETIFNDEFY------EKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGT 554 (1008)
T ss_pred EEeecChhhhhhhhHHHh------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCc
No 495
>PLN02306 hydroxypyruvate reductase
Probab=85.84 E-value=2.4 Score=41.48 Aligned_cols=71 Identities=20% Similarity=0.166 Sum_probs=42.6
Q ss_pred cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhc--Cc----CCCCcceecCHHHHHhcccccC
Q 022250 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCD--ME----QPLEIPVMSDLTMVLGSISQSK 105 (300)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~---~~~g--~~----~~~gv~v~~dl~~~l~~~~~~~ 105 (300)
-.+|+|+|. |++|+.+++.+...=++++.+ +|+... .+.. ...| +. ...++..+.++++++.
T Consensus 165 gktvGIiG~-G~IG~~vA~~l~~~fGm~V~~-~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~------ 235 (386)
T PLN02306 165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQS-TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR------ 235 (386)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCEEEE-ECCCCc-hhhhhhhhhhcccccccccccccccccCCHHHHHh------
Confidence 368999997 999999999875334888764 665321 0100 0000 00 0011222468999995
Q ss_pred CccEEEEcC
Q 022250 106 ARAVVIDFT 114 (300)
Q Consensus 106 ~~DVVIDfT 114 (300)
.+|+|+-..
T Consensus 236 ~sDiV~lh~ 244 (386)
T PLN02306 236 EADVISLHP 244 (386)
T ss_pred hCCEEEEeC
Confidence 789988654
No 496
>PRK07578 short chain dehydrogenase; Provisional
Probab=85.74 E-value=4.9 Score=34.44 Aligned_cols=28 Identities=39% Similarity=0.581 Sum_probs=23.5
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEE
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAG 65 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg 65 (300)
|++.|.|++|.+|+.+++.+.+. .+++.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~ 28 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVIT 28 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEE
Confidence 37999999999999999998765 56655
No 497
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=85.72 E-value=5.7 Score=36.44 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=55.8
Q ss_pred CcceEEEEcCCchHHHH-HHHHHHh----cCCcEEEEEEecCCCCc-chhhhhcCcCCCCcceecCHHHHHhcccccCCc
Q 022250 34 SNIKVIINGAVKEIGRA-AVIAVTK----ARGMEVAGAIDSHSVGE-DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~-i~~~i~~----~~~~eLvg~vd~~~~g~-d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (300)
|++||+|+=+ |++|.. ++++++. .+|+++--+-...+.+. ++. +.....++ +-+|
T Consensus 1 mvvKiGiiKl-GNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~--------------~~~~~~~~----~~~p 61 (277)
T PRK00994 1 MVVKIGIIKL-GNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVE--------------EVVKKMLE----EWKP 61 (277)
T ss_pred CeEEEEEEEe-cccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHH--------------HHHHHHHH----hhCC
Confidence 5799999998 999987 4444432 23443321111111111 000 00112222 2479
Q ss_pred cEEEEcCCchhH--HHHHH-HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCC-CeEEEcCCCcHHH
Q 022250 108 AVVIDFTDASTV--YDNVK-QATAFGMRSVVYVPHIQLETVSALSAFCDKAS-MGCLIAPTLSIGS 169 (300)
Q Consensus 108 DVVIDfT~p~~~--~~~~~-~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~-i~iv~a~N~SiGv 169 (300)
|.+|-.|+..++ ..-++ ...+.|+|.|+=+-+-+....++| ++.| -.+++-+.==||.
T Consensus 62 Df~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l----~~~g~GYIivk~DpMIGA 123 (277)
T PRK00994 62 DFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAM----EEQGLGYIIVKADPMIGA 123 (277)
T ss_pred CEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHH----HhcCCcEEEEecCccccc
Confidence 998866642222 22233 334679999987766554332333 3333 3455555555554
No 498
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=85.64 E-value=2.4 Score=36.64 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=49.1
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (300)
.++.|+|+ |+.|+-+++.+... +..+ -+++.++. +.+... --|..+ .++++++ ..+|++|-.|-
T Consensus 24 k~vvV~GY-G~vG~g~A~~lr~~-Ga~V-~V~e~DPi-~alqA~-----~dGf~v-~~~~~a~------~~adi~vtaTG 87 (162)
T PF00670_consen 24 KRVVVIGY-GKVGKGIARALRGL-GARV-TVTEIDPI-RALQAA-----MDGFEV-MTLEEAL------RDADIFVTATG 87 (162)
T ss_dssp SEEEEE---SHHHHHHHHHHHHT-T-EE-EEE-SSHH-HHHHHH-----HTT-EE-E-HHHHT------TT-SEEEE-SS
T ss_pred CEEEEeCC-CcccHHHHHHHhhC-CCEE-EEEECChH-HHHHhh-----hcCcEe-cCHHHHH------hhCCEEEECCC
Confidence 58999998 99999999998754 5544 34554321 111111 123333 3577877 37898887775
Q ss_pred chhH--HHHHHHHHHcCCCEEEeCCC-CCHH-HHHHHHHH
Q 022250 116 ASTV--YDNVKQATAFGMRSVVYVPH-IQLE-TVSALSAF 151 (300)
Q Consensus 116 p~~~--~~~~~~al~~G~~vVigTTG-~~~e-~~~~L~~~ 151 (300)
+..+ .+++. ..+-..++...| ++.| +.+.|.+.
T Consensus 88 ~~~vi~~e~~~---~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 88 NKDVITGEHFR---QMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SSSSB-HHHHH---HS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CccccCHHHHH---HhcCCeEEeccCcCceeEeecccccc
Confidence 5442 34443 234445555554 4433 44455544
No 499
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=85.58 E-value=3 Score=37.46 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=49.9
Q ss_pred ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT 114 (300)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT 114 (300)
.++.|.|+++.+|+.+++.+.+ .+..++....++. +...... ..++.... ..+ -+.+|+|
T Consensus 9 k~vlItGas~gIG~~ia~~l~~-~G~~v~~~~~~~~--~~~~~~~-----------~~~~~~~~-----~~~~~~~~D~~ 69 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQ-SGVNIAFTYNSNV--EEANKIA-----------EDLEQKYG-----IKAKAYPLNIL 69 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHHH-----------HHHHHhcC-----CceEEEEcCCC
Confidence 5788999999999999999885 6788765443321 1111110 00111000 111 2456888
Q ss_pred CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250 115 DASTVYDNVKQATAF--GMRSVVYVPH 139 (300)
Q Consensus 115 ~p~~~~~~~~~al~~--G~~vVigTTG 139 (300)
.++...+.+....+. .+++++-.-|
T Consensus 70 ~~~~~~~~~~~~~~~~g~id~lv~nAg 96 (260)
T PRK08416 70 EPETYKELFKKIDEDFDRVDFFISNAI 96 (260)
T ss_pred CHHHHHHHHHHHHHhcCCccEEEECcc
Confidence 888887777766543 4677765443
No 500
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.56 E-value=15 Score=35.94 Aligned_cols=124 Identities=17% Similarity=0.209 Sum_probs=64.9
Q ss_pred CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-e---cCHHHHHhcccccCCccE
Q 022250 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAV 109 (300)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DV 109 (300)
.+.+|.|+|+ |++|+.+++.+.+ .+.+++ ++|.+. +....+.. .-.++.+ + .+.+.+.+. .-.++|+
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~-~~~~v~-vid~~~--~~~~~~~~--~~~~~~~i~gd~~~~~~L~~~--~~~~a~~ 300 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEK-EGYSVK-LIERDP--ERAEELAE--ELPNTLVLHGDGTDQELLEEE--GIDEADA 300 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHHH--HCCCCeEEECCCCCHHHHHhc--CCccCCE
Confidence 3688999998 9999999998764 567765 455432 11111110 0012322 2 233333210 1246788
Q ss_pred EEEcCCch-hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHH
Q 022250 110 VIDFTDAS-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (300)
Q Consensus 110 VIDfT~p~-~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l 171 (300)
||-.+.-+ ........|.+.+.+-|+-... +++..+.+ +..|+-.+++|..-.+-.+
T Consensus 301 vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~-~~~~~~~~----~~~g~~~vi~p~~~~~~~~ 358 (453)
T PRK09496 301 FIALTNDDEANILSSLLAKRLGAKKVIALVN-RPAYVDLV----EGLGIDIAISPRQATASEI 358 (453)
T ss_pred EEECCCCcHHHHHHHHHHHHhCCCeEEEEEC-CcchHHHH----HhcCCCEEECHHHHHHHHH
Confidence 87555433 2233334556667665554332 33333333 4455667777776554433
Done!