BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022253
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 109/248 (43%), Gaps = 23/248 (9%)
Query: 48 VVLLHPFG--FDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDR---TASFQAECM 102
V+L+H G W+ + AL+K Y V PD + FG TDRP+ + + +
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFG--FTDRPENYNYSKDSWVDHI 85
Query: 103 AKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSV---MGLTESVSNAALE 159
+ L +EK +VG S+GG + A Y + V+ MV+ +V +TE ++
Sbjct: 86 IGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTRFDVTEGLNAVWGY 145
Query: 160 RIGYESWVDFLLPKTADALKVQFDIA--CYKLPTLPAFVYKHILEALSDHRKE-RIELLQ 216
E+ + L D V ++A Y+ P F E+ S E R +
Sbjct: 146 TPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGF-----QESFSSMFPEPRQRWID 200
Query: 217 ALVISDKEF-SIPHFSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNL 275
AL SD++ ++P+ + IH G D++ + + L E + + A + + GH +
Sbjct: 201 ALASSDEDIKTLPNETLIIH---GREDQVVPLSSSLRLGELIDR-AQLHVFGRCGHWTQI 256
Query: 276 ERPFVYNR 283
E+ +NR
Sbjct: 257 EQTDRFNR 264
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 25/249 (10%)
Query: 48 VVLLHPFG--FDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDR---TASFQAECM 102
V+L+H G W+ + AL+K Y V PD + FG TDRP+ + + +
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFG--FTDRPENYNYSKDSWVDHI 85
Query: 103 AKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIG 162
+ L +EK +VG ++GG + A Y + V+ MV+ + G V+ G
Sbjct: 86 IGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAA-GTRFDVTEGLNAVWG 144
Query: 163 Y----ESWVDFLLPKTADALKVQFDIA--CYKLPTLPAFVYKHILEALSDHRKE-RIELL 215
Y E+ + L D V ++A Y+ P F E+ S E R +
Sbjct: 145 YTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGF-----QESFSSMFPEPRQRWI 199
Query: 216 QALVISDKEF-SIPHFSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVN 274
AL SD++ ++P+ + IH G D++ + + L E + + A + + GH
Sbjct: 200 DALASSDEDIKTLPNETLIIH---GREDQVVPLSSSLRLGELIDR-AQLHVFGRCGHWTQ 255
Query: 275 LERPFVYNR 283
+E+ +NR
Sbjct: 256 IEQTDRFNR 264
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 95/254 (37%), Gaps = 42/254 (16%)
Query: 45 KHAVVLLHPFGFDGILTWQFQVLALAKTY-----EVYVPDFLFFGSS--VTDRPDRTASF 97
+H + LH G +W F + + V PD FG S TD T F
Sbjct: 46 EHTFLCLH-----GEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDAVYTFGF 100
Query: 98 QAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAA 157
+ L L +E+ TLV +GG++G + P LV+ ++V + + + S
Sbjct: 101 HRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGK-- 158
Query: 158 LERIGYESWVDFL---------------LPKTADALKVQFDIACYKLPTLPAFV--YKHI 200
G+ESW DF+ +P DA +D A + P A V + I
Sbjct: 159 ----GFESWRDFVANSPDLDVGKLMQRAIPGITDAEVAAYD-APFPGPEFKAGVRRFPAI 213
Query: 201 LEALSDHRKERIELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKEQVGQN 260
+ D I QA+ ++S P F + G D + +V L++ +
Sbjct: 214 VPITPDMEGAEIG-RQAMSFWSTQWSGPTF-----MAVGAQDPVLGPEVMGMLRQAIRGC 267
Query: 261 ATMESIEKAGHLVN 274
+E GH V
Sbjct: 268 PEPMIVEAGGHFVQ 281
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 47 AVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKG 105
AV L H F + +W++Q+ ALA+ Y V D +G S P + E + K
Sbjct: 41 AVCLCHGFP-ESWYSWRYQIPALAQAGYRVLAMDMKGYGESSA--PPEIEEYCMEVLCKE 97
Query: 106 ----LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERI 161
L KLG+ + +G +GGM+ + MA YP+ V + V + + + + + + LE I
Sbjct: 98 MVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRA-VASLNTPFIPANPNMSPLESI 156
Query: 162 GYESWVDFLL----PKTADA 177
D+ L P A+A
Sbjct: 157 KANPVFDYQLYFQEPGVAEA 176
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 47 AVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKG 105
AV L H F + +W++Q+ ALA+ Y V D +G S P + E + K
Sbjct: 56 AVCLCHGFP-ESWYSWRYQIPALAQAGYRVLAMDMKGYGESSA--PPEIEEYCMEVLCKE 112
Query: 106 ----LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERI 161
L KLG+ + +G +GGM+ + MA YP+ V + V + + + + + + LE I
Sbjct: 113 MVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRA-VASLNTPFIPANPNMSPLESI 171
Query: 162 GYESWVDFLL----PKTADA 177
D+ L P A+A
Sbjct: 172 KANPVFDYQLYFQEPGVAEA 191
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 47 AVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKG 105
AV L H F + +W++Q+ ALA+ Y V D +G S P + E + K
Sbjct: 260 AVCLCHGFP-ESWYSWRYQIPALAQAGYRVLAMDMKGYGESSA--PPEIEEYCMEVLCKE 316
Query: 106 ----LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERI 161
L KLG+ + +G +GGM+ + MA YP+ V + V + + + + + + LE I
Sbjct: 317 MVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRA-VASLNTPFIPANPNMSPLESI 375
Query: 162 GYESWVDFLL----PKTADA 177
D+ L P A+A
Sbjct: 376 KANPVFDYQLYFQEPGVAEA 395
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 93/229 (40%), Gaps = 18/229 (7%)
Query: 69 LAKTYEVYVPDFLFFGSSVTD--RPDRTASFQ--AECMAKGLRKLGVEKCTLVGVSYGGM 124
+ K + V PD G S TD PDR+ S + A+ M + +++LG+ + G S GG
Sbjct: 48 IGKKWRVIAPDLPGHGKS-TDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWSLGGH 106
Query: 125 VGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDI 184
+G +M YP++ +++T + E V G++S D L + + D+
Sbjct: 107 IGIEMIARYPEM-RGLMITGTPPVAREEVGQ------GFKSGPDMAL--AGQEIFSERDV 157
Query: 185 ACYKLPTLPAFVYKHILE--ALSDHRKERI--ELLQALVISDKEFSIPHFSQKIHLLWGE 240
Y T +L+ A +D R RI E + ++ + I ++ G
Sbjct: 158 ESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGR 217
Query: 241 NDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPFVYNRQLKTIL 289
++ ++ +K I+ AGH E P ++ L +
Sbjct: 218 DEPFVELDFVSKVKFGNLWEGKTHVIDNAGHAPFREAPAEFDAYLARFI 266
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 69 LAKTYEVYVPDFLFFGSSVTD--RPDRTASFQ--AECMAKGLRKLGVEKCTLVGVSYGGM 124
+ K + V PD G S TD PDR+ S + A+ M + +++LG+ + G S GG
Sbjct: 48 IGKKWRVIAPDLPGHGKS-TDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWSLGGH 106
Query: 125 VGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDI 184
+G +M YP++ +++T + E V G++S D L + + D+
Sbjct: 107 IGIEMIARYPEM-RGLMITGTPPVAREEVGQ------GFKSGPDMAL--AGQEIFSERDV 157
Query: 185 ACYKLPTLPAFVYKHILE--ALSDHRKERI 212
Y T +L+ A +D R RI
Sbjct: 158 ESYARSTCGEPFEASLLDIVARTDGRARRI 187
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 97/248 (39%), Gaps = 21/248 (8%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD--RPDRTASFQAE 100
+ + +VL H FG D + W+ V L Y V + D + G++ D DR ++ +
Sbjct: 17 SGEATIVLGHGFGTDQSV-WKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGY 75
Query: 101 C--MAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAAL 158
+ L L +E C VG S M+G + PDL +V+ S S +
Sbjct: 76 SFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMI--------SASPRYV 127
Query: 159 ERIGYESWVDFL-LPKTADALKVQFDIACYKLPTLP------AFVYKHILEALSDHRKE- 210
+ Y+ + L + +A++ + C L + + L + R +
Sbjct: 128 NDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDI 187
Query: 211 RIELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAG 270
+ + Q + SD +P + H+L D + V+ L +G + +E I G
Sbjct: 188 ALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDG 247
Query: 271 HLVNLERP 278
HL L P
Sbjct: 248 HLPQLSSP 255
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 97/248 (39%), Gaps = 21/248 (8%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD--RPDRTASFQAE 100
+ + +VL H FG D + W+ V L Y V + D + G++ D DR ++ +
Sbjct: 33 SGEATIVLGHGFGTDQSV-WKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGY 91
Query: 101 C--MAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAAL 158
+ L L +E C VG S M+G + PDL +V+ S S +
Sbjct: 92 SFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMI--------SASPRYV 143
Query: 159 ERIGYESWVDFL-LPKTADALKVQFDIACYKLPTLP------AFVYKHILEALSDHRKE- 210
+ Y+ + L + +A++ + C L + + L + R +
Sbjct: 144 NDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDI 203
Query: 211 RIELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAG 270
+ + Q + SD +P + H+L D + V+ L +G + +E I G
Sbjct: 204 ALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDG 263
Query: 271 HLVNLERP 278
HL L P
Sbjct: 264 HLPQLSSP 271
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 97/248 (39%), Gaps = 21/248 (8%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD--RPDRTASFQAE 100
+ + +VL H FG D + W+ V L Y V + D + G++ D DR ++ +
Sbjct: 15 SGEATIVLGHGFGTDQSV-WKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGY 73
Query: 101 C--MAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAAL 158
+ L L +E C VG S M+G + PDL +V+ S S +
Sbjct: 74 SFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMI--------SASPRYV 125
Query: 159 ERIGYESWVDFL-LPKTADALKVQFDIACYKLPTLP------AFVYKHILEALSDHRKE- 210
+ Y+ + L + +A++ + C L + + L + R +
Sbjct: 126 NDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDI 185
Query: 211 RIELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAG 270
+ + Q + SD +P + H+L D + V+ L +G + +E I G
Sbjct: 186 ALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDG 245
Query: 271 HLVNLERP 278
HL L P
Sbjct: 246 HLPQLSSP 253
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 18/229 (7%)
Query: 69 LAKTYEVYVPDFLFFGSSVTD--RPDRTASFQ--AECMAKGLRKLGVEKCTLVGVSYGGM 124
+ K + V PD G S TD PDR+ S + A+ M + +++LG+ + G GG
Sbjct: 48 IGKKWRVIAPDLPGHGKS-TDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWGLGGH 106
Query: 125 VGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDI 184
+G +M YP++ +++T + E V G++S D L + + D+
Sbjct: 107 IGIEMIARYPEM-RGLMITGTPPVAREEVGQ------GFKSGPDMAL--AGQEIFSERDV 157
Query: 185 ACYKLPTLPAFVYKHILE--ALSDHRKERI--ELLQALVISDKEFSIPHFSQKIHLLWGE 240
Y T +L+ A +D R RI E + ++ + I ++ G
Sbjct: 158 ESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGR 217
Query: 241 NDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPFVYNRQLKTIL 289
++ ++ +K I+ AGH E P ++ L +
Sbjct: 218 DEPFVELDFVSKVKFGNLWEGKTHVIDNAGHAPFREAPAEFDAYLARFI 266
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 106/276 (38%), Gaps = 36/276 (13%)
Query: 33 ILNIWVPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD--- 89
ILN+ V + + VVL H FG D W + L + + V + D + GS D
Sbjct: 9 ILNVRV--VGSGERVVVLSHGFGTDQS-AWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFD 65
Query: 90 --RPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV-VTCSV 146
R D ++ + +A L L + +C VG S M+G + PDL +V + S
Sbjct: 66 FRRYDNLDAYVDDLLAI-LDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASP 124
Query: 147 MGLTESVSNAALE-----------RIGYESWVDFLLPKTADALKVQFDIACYKLPTLPAF 195
L +S + E Y +W P L V D+ PA
Sbjct: 125 RFLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAP-----LAVGADV--------PAA 171
Query: 196 VYKHILEALSDHRKE-RIELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLK 254
V + L + R + + + Q + +D + ++ D VA LK
Sbjct: 172 V-QEFSRTLFNMRPDISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLK 230
Query: 255 EQVGQNATMESIEKAGHLVNLERPFVYNRQLKTILA 290
+G T+E ++ GHL +L P + + L+ LA
Sbjct: 231 AHLGGRTTVEFLQTEGHLPHLSAPSLLAQVLRRALA 266
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 106/276 (38%), Gaps = 36/276 (13%)
Query: 33 ILNIWVPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD--- 89
ILN+ V + + VVL H FG D W + L + + V + D + GS D
Sbjct: 7 ILNVRV--VGSGERVVVLSHGFGTDQS-AWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFD 63
Query: 90 --RPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV-VTCSV 146
R D ++ + +A L L + +C VG S M+G + PDL +V + S
Sbjct: 64 FRRYDNLDAYVDDLLAI-LDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASP 122
Query: 147 MGLTESVSNAALE-----------RIGYESWVDFLLPKTADALKVQFDIACYKLPTLPAF 195
L +S + E Y +W P L V D+ PA
Sbjct: 123 RFLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAP-----LAVGADV--------PAA 169
Query: 196 VYKHILEALSDHRKE-RIELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLK 254
V + L + R + + + Q + +D + ++ D VA LK
Sbjct: 170 V-QEFSRTLFNMRPDISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLK 228
Query: 255 EQVGQNATMESIEKAGHLVNLERPFVYNRQLKTILA 290
+G T+E ++ GHL +L P + + L+ LA
Sbjct: 229 AHLGGRTTVEFLQTEGHLPHLSAPSLLAQVLRRALA 264
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 47 AVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSV--TDRPDRTASFQAECMAK 104
A++LLH F + W LA Y V D +G S PD A++ MA
Sbjct: 27 ALLLLHGFP-QNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDH-ANYSFRAMAS 84
Query: 105 G----LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV 142
+R LG E+ LVG + GG G +MA +PD V S+ V
Sbjct: 85 DQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAV 126
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 98/265 (36%), Gaps = 32/265 (12%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD----RPDRTASFQ 98
+ + +VL H FG D W + + Y V + D + GS D R T
Sbjct: 18 SGERVLVLAHGFGTDQS-AWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRYTTLDPY 76
Query: 99 AECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV-VTCSVMGLTESVSNAA 157
+ + L LG++ C VG S M+G + P+L ++ + S L + +
Sbjct: 77 VDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGG 136
Query: 158 LER-----------IGYESWVDFLLPKTADALKVQFDIACYKLPTLPAFVYKHILEALSD 206
E+ YE+WV+ P L V D+ PA V + L +
Sbjct: 137 FEQGEIEKVFSAMEANYEAWVNGFAP-----LAVGADV--------PAAV-REFSRTLFN 182
Query: 207 HRKERIELLQALVI-SDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMES 265
R + + V SD + H+ D VA LK +G T+
Sbjct: 183 MRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHW 242
Query: 266 IEKAGHLVNLERPFVYNRQLKTILA 290
+ GHL +L P + ++L+ L+
Sbjct: 243 LNIEGHLPHLSAPTLLAQELRRALS 267
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 47 AVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSV--TDRPDRTASFQAECMAK 104
A++LLH F + W LA Y V D +G S PD A++ MA
Sbjct: 27 ALLLLHGFP-QNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDH-ANYSFRAMAS 84
Query: 105 G----LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV 142
+R LG E+ LVG GG G +MA +PD V S+ V
Sbjct: 85 DQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAV 126
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 102/263 (38%), Gaps = 23/263 (8%)
Query: 31 GTILNIWVPKKTTKKHAVVLLHPFG--FDGILTWQFQVLALAKTYEVYVPDFLFFGSSVT 88
GT+ + + + AVVLLH G W+ + LA+ + V PD + FG S
Sbjct: 15 GTLASHALVAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEY 74
Query: 89 DR--PDRTASF---QAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVT 143
P S+ + E + + G+EK +VG S GG V ++ P+ + + +
Sbjct: 75 PETYPGHIMSWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALM 134
Query: 144 CSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLPTLPAF--VYKHIL 201
SV G + L R+ + F + Y P + K
Sbjct: 135 GSV-GAPMNARPPELARL-----LAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRF 188
Query: 202 EALSDHRKERIE--LLQALVISDKEFSIP-----HFSQKIHLLWGENDKIFDMQVARNLK 254
E +D RI+ + +++ + IP + + G D+I + + L
Sbjct: 189 EVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDRIVPLDTSLYLT 248
Query: 255 EQVGQNATMESIEKAGHLVNLER 277
+ + ++A + +++ GH LER
Sbjct: 249 KHL-KHAELVVLDRCGHWAQLER 270
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 96/259 (37%), Gaps = 44/259 (16%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPD----RTASFQ 98
T + L H FG D W + + Y V + D + GS D D T
Sbjct: 17 TGDRILFLAHGFGTDQS-AWHLILPYFTQNYRVVLYDLVCAGSVNPDYFDFNRYTTLDPY 75
Query: 99 AECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV-VTCSVMGLTESVSNAA 157
+ + + LG++ C VG S M+G + P+L ++ + S L + +
Sbjct: 76 VDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSPRFLNDEDYHGG 135
Query: 158 LER-----------IGYESWVDFLLPKT--AD--ALKVQFDIACYKL-PTLPAFVYKHIL 201
E YE+WV P AD A +F + + P + FV + +
Sbjct: 136 FEEGEIEKVFSAMEANYEAWVHGFAPLAVGADVPAAVREFSRTLFNMRPDISLFVSRTVF 195
Query: 202 EALSDHRK--ERIELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKEQVGQ 259
SD R + + ++ + K+ S+P VA L+ +G
Sbjct: 196 N--SDLRGVLGLVRVPTCVIQTAKDVSVP------------------ASVAEYLRSHLGG 235
Query: 260 NATMESIEKAGHLVNLERP 278
+ T+E+++ GHL L P
Sbjct: 236 DTTVETLKTEGHLPQLSAP 254
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 47 AVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKG 105
A+ L H F + +W++Q+ ALA+ + V D +G S + P + E + K
Sbjct: 258 ALCLCHGFP-ESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSS--PPEIEEYAMELLCKE 314
Query: 106 ----LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV 141
L KLG+ + +G + G++ + MA YP+ V ++
Sbjct: 315 MVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVA 354
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 98/265 (36%), Gaps = 32/265 (12%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD----RPDRTASFQ 98
+ + +VL H FG D W + + Y V + D + GS D R T
Sbjct: 18 SGERVLVLAHGFGTDQS-AWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRYTTLDPY 76
Query: 99 AECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV-VTCSVMGLTESVSNAA 157
+ + L LG++ C VG + M+G + P+L ++ + S L + +
Sbjct: 77 VDDLLHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGG 136
Query: 158 LER-----------IGYESWVDFLLPKTADALKVQFDIACYKLPTLPAFVYKHILEALSD 206
E+ YE+WV+ P L V D+ PA V + L +
Sbjct: 137 FEQGEIEKVFSAMEANYEAWVNGFAP-----LAVGADV--------PAAV-REFSRTLFN 182
Query: 207 HRKERIELLQALVI-SDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMES 265
R + + V SD + H+ D VA LK +G T+
Sbjct: 183 MRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHW 242
Query: 266 IEKAGHLVNLERPFVYNRQLKTILA 290
+ GHL +L P + ++L+ L+
Sbjct: 243 LNIEGHLPHLSAPTLLAQELRRALS 267
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 73 YEVYVPDFLFFGSSVT------DRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVG 126
Y VY PD+ FG S + DR D AE + L+ GV + + G S GG
Sbjct: 57 YNVYAPDYPGFGRSASSEKYGIDRGD--LKHAAEFIRDYLKANGVARSVIXGASXGGGXV 114
Query: 127 FKMAEMYPDLVESMVVTC 144
YPD+V+ ++
Sbjct: 115 IXTTLQYPDIVDGIIAVA 132
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 232 QKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERP 278
QK L+WG D + + +++ + + +E +E +GH V +E+P
Sbjct: 148 QKTLLVWGSKDHVVPIALSKEYASII-SGSRLEIVEGSGHPVYIEKP 193
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 93/227 (40%), Gaps = 21/227 (9%)
Query: 61 TWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQAECMAKGLRKLGVE-KCTLVGV 119
W+ + LA+ Y V D L FG + + T + + ++ + + K ++VG
Sbjct: 54 NWRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVGN 113
Query: 120 SYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGY----ESWVDFLLPKTA 175
S GG G ++ ++ +LV ++V+ S GL + I Y E V + T
Sbjct: 114 SMGGATGLGVSVLHSELVNALVLMGSA-GLVVEIHEDLRPIINYDFTREGMVHLVKALTN 172
Query: 176 DALKVQFDIACYKLPTLPAFVYKHILEALSDHRKERIELLQALVISDKEFSIPHFSQKIH 235
D K+ + + Y + + + RK + +Q + F P F +K+
Sbjct: 173 DGFKIDDAMINSR--------YTYATDEAT--RKAYVATMQWIREQGGLFYDPEFIRKVQ 222
Query: 236 ----LLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERP 278
++ G++DK+ ++ A + + ++ I GH +E P
Sbjct: 223 VPTLVVQGKDDKVVPVETAYKFLDLI-DDSWGYIIPHCGHWAMIEHP 268
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 48 VVLLHPFGFDGIL-TWQFQVLALAKTYEVYVPDFLFFGSS----VTDRPDRTASFQAECM 102
++LLH G+ G W + LA+ Y+V VPD FG S + D + A+
Sbjct: 32 LLLLH--GWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSKYSLDKAADDQ 89
Query: 103 AKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
A L LG+EK +VG + +V K Y D V
Sbjct: 90 AALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRV 124
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 236 LLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPFVYNRQLKT 287
++WG D + N TME+IE GH + +E+P + ++KT
Sbjct: 240 MIWGLGDTCVPYAPLIEFVPKYYSNYTMETIEDCGHFLMVEKPEIAIDRIKT 291
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L+G SYGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V + R+ +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKE--MNRL-----IDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHILEA 203
F ++H+L +
Sbjct: 176 YFYHQHLLRS 185
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L+G SYGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V + R+ +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKE--MNRL-----IDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHILEA 203
F ++H+L +
Sbjct: 176 YFYHQHLLRS 185
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L+G SYGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V + R+ +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKE--MNRL-----IDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHILEA 203
F ++H+L +
Sbjct: 176 YFYHQHLLRS 185
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L+G SYGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V + R+ +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKE--MNRL-----IDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHILEA 203
F ++H+L +
Sbjct: 176 YFYHQHLLRS 185
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L+G SYGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V + R+ +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKE--MNRL-----IDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHILEA 203
F ++H+L +
Sbjct: 176 YFYHQHLLRS 185
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 21/157 (13%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLP-----KT 174
+G +GF A+ P+ V+ + C M + ++ W +F +T
Sbjct: 106 DWGSALGFHWAKRNPERVKG--IAC--MEFIRPIPT-------WDEWPEFARELFQAFRT 154
Query: 175 AD-ALKVQFDIACYKLPTLPAFVYKHILEALSDHRKE 210
AD ++ D + LP FV + + E DH +E
Sbjct: 155 ADVGRELIIDQNAFIEQVLPKFVVRPLTEVEMDHYRE 191
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L G SYGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLXGSSYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKEX-------NRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHILEA 203
F ++H+L +
Sbjct: 176 YFYHQHLLRS 185
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 35 NIWVPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRT 94
NIW K +VLLH +G + + W+ L+ + +++ D FG R
Sbjct: 3 NIWWQTKGQGNVHLVLLHGWGLNAEV-WRCIDEELSSHFTLHLVDLPGFG-----RSRGF 56
Query: 95 ASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCS 145
+ MA+ + + +K +G + GG+V ++A +P+ V+++V S
Sbjct: 57 GALSLADMAEAVLQQAPDKAIWLGWALGGLVASQIALTHPERVQALVTVAS 107
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L+G +YGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSAYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V + R+ +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKE--MNRL-----IDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHILEA 203
F ++H+L +
Sbjct: 176 YFYHQHLLRS 185
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTAD-AL 178
+G +GF A+ P+ V+ + + + R ++++ +TAD
Sbjct: 106 DWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAF------RTADVGR 159
Query: 179 KVQFDIACYKLPTLPAFVYKHILEALSDHRKE 210
++ D + LP +V + + E DH +E
Sbjct: 160 ELIIDQNAFIEGALPKYVVRPLTEVEMDHYRE 191
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 35 NIWVPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRT 94
NIW K +VLLH +G + + W+ L+ + +++ D FG R+
Sbjct: 3 NIWWQTKGQGNVHLVLLHGWGLNAEV-WRCIDEELSSHFTLHLVDLPGFG--------RS 53
Query: 95 ASFQAECMA---KGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCS 145
F A +A + + + +K +G S GG+V ++A +P+ V ++V S
Sbjct: 54 RGFGALSLADXAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVAS 107
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 11/152 (7%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 45 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 102
Query: 120 SYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTAD-AL 178
+G +GF A+ P+ V+ + + R ++++ +TAD
Sbjct: 103 DWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAF------RTADVGR 156
Query: 179 KVQFDIACYKLPTLPAFVYKHILEALSDHRKE 210
++ D + LP +V + + E DH +E
Sbjct: 157 ELIIDQNAFIEGALPKYVVRPLTEVEMDHYRE 188
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 11/152 (7%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTAD-AL 178
+G +GF A+ P+ V+ + + R ++++ +TAD
Sbjct: 106 DWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAF------RTADVGR 159
Query: 179 KVQFDIACYKLPTLPAFVYKHILEALSDHRKE 210
++ D + LP +V + + E DH +E
Sbjct: 160 ELIIDQNAFIEGALPKYVVRPLTEVEMDHYRE 191
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 11/152 (7%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTAD-AL 178
+G +GF A+ P+ V+ + + R ++++ +TAD
Sbjct: 106 DWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAF------RTADVGR 159
Query: 179 KVQFDIACYKLPTLPAFVYKHILEALSDHRKE 210
++ D + LP +V + + E DH +E
Sbjct: 160 ELIIDQNAFIEGALPKYVVRPLTEVEMDHYRE 191
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQ--AECMAKG 105
V+ LH G + TW ++ L + D G S R D S Q +E +A
Sbjct: 84 VIFLHGGGQN-AHTWDTVIVGLGEP--ALAVDLPGHGHSAW-REDGNYSPQLNSETLAPV 139
Query: 106 LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALER 160
LR+L +VG+S GG+ ++A M PDLV +V+ V+ +AL+R
Sbjct: 140 LRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLV--------DVTPSALQR 186
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDR-PDRTASFQAECMAKGL 106
+VL + G D + W QV AL+K + V D G S + P + + GL
Sbjct: 29 IVLSNSLGTD-LSXWAPQVAALSKHFRVLRYDTRGHGHSEAPKGPYTIEQLTGDVL--GL 85
Query: 107 RK-LGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV--TCSVMGLTES-VSNAALERI- 161
L + + G+S GG+ G +A + D +E + + T + +G E V A R
Sbjct: 86 XDTLKIARANFCGLSXGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTE 145
Query: 162 GYESWVDFLLPK--TAD 176
G + D +LP+ TAD
Sbjct: 146 GXHALADAVLPRWFTAD 162
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 75 VYVPDFLFFGSS--VTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEM 132
V PDF FG S D D T F + + +L + TLV +GG +G +
Sbjct: 77 VIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMA 136
Query: 133 YPDLVESMVVTCSVMGLTESVSNAALERI------GYESW 166
P + +++ + + +T+ V+ A G+ +W
Sbjct: 137 DPSRFKRLIIMNAXL-MTDPVTQPAFSAFVTQPADGFTAW 175
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 75 VYVPDFLFFGSS--VTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEM 132
V PDF FG S D D T F + + +L + TLV +GG +G +
Sbjct: 77 VIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMA 136
Query: 133 YPDLVESMVVTCSVMGLTESVSNAALERI------GYESW 166
P + +++ + + +T+ V+ A G+ +W
Sbjct: 137 DPSRFKRLIIMNACL-MTDPVTQPAFSAFVTQPADGFTAW 175
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 75 VYVPDFLFFGSS--VTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEM 132
V PDF FG S D D T F + + +L + TLV +GG +G +
Sbjct: 77 VIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMA 136
Query: 133 YPDLVESMVVTCSVMGLTESVSNAALERI------GYESW 166
P + +++ + + +T+ V+ A G+ +W
Sbjct: 137 DPSRFKRLIIMNACL-MTDPVTQPAFSAFVTQPADGFTAW 175
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 75 VYVPDFLFFGSS--VTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEM 132
V PDF FG S D D T F + + +L + TLV +GG +G +
Sbjct: 77 VIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMA 136
Query: 133 YPDLVESMVVTCSVMGLTESVSNAALERI------GYESW 166
P + +++ + + +T+ V+ A G+ +W
Sbjct: 137 DPSRFKRLIIMNACL-MTDPVTQPAFSAFVTQPADGWTAW 175
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 75 VYVPDFLFFGSS--VTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEM 132
V PDF FG S D D T F + + +L + TLV +GG +G +
Sbjct: 77 VIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQXWGGFLGLTLPMA 136
Query: 133 YPDLVESMVVTCSVMGLTESVSNAALERI------GYESW 166
P + +++ + + +T+ V+ A G+ +W
Sbjct: 137 DPSRFKRLIIMNACL-MTDPVTQPAFSAFVTQPADGFTAW 175
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 60 LTWQFQVLALAKTYEVYVPDFLFFGSSVT---DRPDRTASFQAECMAKGLRKLGVEKCTL 116
L W LA+ Y V + D +G S + D + + A + + +LG E+ +
Sbjct: 45 LAWHRIAPRLAEDYSVVLADLRGYGESRALDEEGADYSKAALARDQLETMGQLGFERFAV 104
Query: 117 VGVSYGGMVGFKMAEMYPDLVESMV 141
+G G VG+++A +P V + V
Sbjct: 105 IGHDRGARVGYRLALDHPQAVAAFV 129
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 11/152 (7%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTAD-AL 178
+G +GF A+ P+ V+ + + + R ++++ +TAD
Sbjct: 106 DWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAF------RTADVGR 159
Query: 179 KVQFDIACYKLPTLPAFVYKHILEALSDHRKE 210
++ D + LP V + + E DH +E
Sbjct: 160 ELIIDQNAFIEGVLPKCVVRPLTEVEMDHYRE 191
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 16/160 (10%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESM--------VVTCSVMGLTESVSNAALERIGYESWVDFLL 171
+G +GF A+ P+ V+ + + T TE E++ F
Sbjct: 106 DWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEFHHTEVAEEQDHAEAARETFQAF-- 163
Query: 172 PKTAD-ALKVQFDIACYKLPTLPAFVYKHILEALSDHRKE 210
+TAD ++ D + LP V + + E DH +E
Sbjct: 164 -RTADVGRELIIDQNAFIERVLPGGVVRPLTEVEMDHYRE 202
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 75 VYVPDFLFFGSS--VTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEM 132
V PDF FG S D D T F + + +L + TLV +GG +G +
Sbjct: 77 VIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMA 136
Query: 133 YPDLVESMVVTCSVMGLTESVSNAAL 158
P + +++ + + +T+ V+ A
Sbjct: 137 DPSRFKRLIIMNACL-MTDPVTQPAF 161
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 16/160 (10%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESM--------VVTCSVMGLTESVSNAALERIGYESWVDFLL 171
+G +GF A+ P+ V+ + + T TE E++ F
Sbjct: 106 DWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEFHHTEVAEEQDHAEAARETFQAF-- 163
Query: 172 PKTAD-ALKVQFDIACYKLPTLPAFVYKHILEALSDHRKE 210
+TAD ++ D + LP V + + E DH +E
Sbjct: 164 -RTADVGRELIIDQNAFIERVLPGGVVRPLTEVEMDHYRE 202
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 11/152 (7%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 45 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 102
Query: 120 SYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTAD-AL 178
+G +GF A+ P+ V+ + + + R ++++ +TAD
Sbjct: 103 DWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAF------RTADVGR 156
Query: 179 KVQFDIACYKLPTLPAFVYKHILEALSDHRKE 210
++ D + LP V + + E DH +E
Sbjct: 157 ELIIDQNAFIEGVLPKCVVRPLTEVEMDHYRE 188
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 41/183 (22%)
Query: 111 VEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFL 170
V LVG S GG+V +A +YPDL++ +V ++ ++ ALE G V +
Sbjct: 118 VRNIYLVGHSQGGVVASMLAGLYPDLIKKVV----LLAPAATLKGDALE--GNTQGVTYN 171
Query: 171 LPKTADALKVQFDIACYKLPTLPAFVYKHILEALSDHRKERIELLQALVISDKEFSIPHF 230
D L +K TL F + + Q L I + F
Sbjct: 172 PDHIPDRLP-------FKDLTLGGFY---------------LRIAQQLPIYEVS---AQF 206
Query: 231 SQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHL---------VNLERPFVY 281
++ + L+ G +D + ++ +Q+ QN+T+ IE A H VNL F+
Sbjct: 207 TKPVCLIHGTDDTVVSPNASKKY-DQIYQNSTLHLIEGADHCFSDSYQKNAVNLTTDFLQ 265
Query: 282 NRQ 284
N
Sbjct: 266 NNN 268
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 20/163 (12%)
Query: 21 MTQRTIEIEPGTILNIWVPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDF 80
+RT+E+E TI + V+ LH L +A Y PD
Sbjct: 9 FAKRTVEVEGATIAYV----DEGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDL 64
Query: 81 LFFGSSVTDRPDRTASFQAECMAKG--LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVE 138
+ G S +PD Q + LG++ LV +G ++G + A + PD V
Sbjct: 65 IGXGDSA--KPDIEYRLQDHVAYXDGFIDALGLDDXVLVIHDWGSVIGXRHARLNPDRV- 121
Query: 139 SMVVTCSVMGLTESVSNAALERIGYESWVDFLLP-----KTAD 176
+ + E++ AL YE+ L P +TAD
Sbjct: 122 ------AAVAFXEALVPPALPXPSYEAXGPQLGPLFRDLRTAD 158
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 11/152 (7%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTAD-AL 178
+G +GF A+ P+ V+ + + R ++++ +TAD
Sbjct: 106 DWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAF------RTADVGR 159
Query: 179 KVQFDIACYKLPTLPAFVYKHILEALSDHRKE 210
++ D + LP V + + E DH +E
Sbjct: 160 ELIIDQNAFIEGALPKCVVRPLTEVEMDHYRE 191
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 106 LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSV 146
L +LGV + +++G S GG + + A +YP VE +V+ +
Sbjct: 108 LERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPI 148
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 11/152 (7%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + +G+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEAVGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTAD-AL 178
+G +GF A+ P+ V+ + + + R ++++ +TAD
Sbjct: 106 DWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAF------RTADVGR 159
Query: 179 KVQFDIACYKLPTLPAFVYKHILEALSDHRKE 210
++ D + LP V + + E DH +E
Sbjct: 160 ELIIDQNAFIEGVLPKCVVRPLTEVEMDHYRE 191
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 41/183 (22%)
Query: 111 VEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFL 170
V LVG + GG+V +A +YPDL++ +V ++ ++ ALE G V +
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVV----LLAPAATLKGDALE--GNTQGVTYN 171
Query: 171 LPKTADALKVQFDIACYKLPTLPAFVYKHILEALSDHRKERIELLQALVISDKEFSIPHF 230
D L +K TL F + + Q L I + F
Sbjct: 172 PDHIPDRLP-------FKDLTLGGFY---------------LRIAQQLPIYEVS---AQF 206
Query: 231 SQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHL---------VNLERPFVY 281
++ + L+ G +D + ++ +Q+ QN+T+ IE A H VNL F+
Sbjct: 207 TKPVCLIHGTDDTVVSPNASKKY-DQIYQNSTLHLIEGADHCFSDSYQKNAVNLTTDFLQ 265
Query: 282 NRQ 284
N
Sbjct: 266 NNN 268
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 80/234 (34%), Gaps = 43/234 (18%)
Query: 73 YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKGLRK-LGVEKCTLVGVSYGGMVGFKMAE 131
Y V + D F S D KGL L +++ LVG S GG A
Sbjct: 64 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFAL 123
Query: 132 MYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLPT 191
YPD + +++ GL S+ P + +K+ F + Y P+
Sbjct: 124 EYPDRIGKLIL-MGPGGLGPSM----------------FAPMPMEGIKLLFKL--YAEPS 164
Query: 192 -------LPAFVYKH--ILEALSDHRKERI----ELLQALVIS---------DKEFSIPH 229
L F+Y I E L R E I E L+ +IS D +
Sbjct: 165 YETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE 224
Query: 230 FSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPFVYNR 283
K + WG +D+ + L + +A + K GH E +NR
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGHWAQWEHADEFNR 277
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 32/161 (19%)
Query: 111 VEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFL 170
V LVG + GG+V +A +YPDL++ +V ++ ++ ALE G V +
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVV----LLAPAATLKGDALE--GNTQGVTYN 171
Query: 171 LPKTADALKVQFDIACYKLPTLPAFVYKHILEALSDHRKERIELLQALVISDKEFSIPHF 230
D L +K TL F + + Q L I + F
Sbjct: 172 PDHIPDRLP-------FKDLTLGGFY---------------LRIAQQLPIYEVS---AQF 206
Query: 231 SQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGH 271
++ + L+ G +D + ++ +Q+ QN+T+ IE A H
Sbjct: 207 TKPVCLIHGTDDTVVSPNASKKY-DQIYQNSTLHLIEGADH 246
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 39 PKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSV-TDRPDRTASF 97
P VVL+ G G W Q+ L + Y+V D G++ T D + +
Sbjct: 9 PPPYADAPVVVLISGLGGSGSY-WLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQ 67
Query: 98 QAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMG 148
A + + L G+E +VG + G +VG ++A YP S+ V SV G
Sbjct: 68 XAAELHQALVAAGIEHYAVVGHALGALVGXQLALDYP---ASVTVLISVNG 115
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 45 KHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQAECMAK 104
+ AV+LLH F + +K Y + P ++ G V P+ F E +
Sbjct: 15 ERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAP--IYSGHGVP--PEALTRFGPEAWWQ 70
Query: 105 G-------LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVM 147
L+ G EK + G+S GG+ K+ P +E +V C+ M
Sbjct: 71 DVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPM 118
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSY 121
W Q+ AL + + V D G+S T + E + + L L V + +G+S
Sbjct: 43 WDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFLGLSL 102
Query: 122 GGMVGFKMAEMYPDLVESMVVT 143
GG+VG +A P +E +V+
Sbjct: 103 GGIVGQWLALHAPQRIERLVLA 124
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 84 GSSVTDRPDR--TASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV 141
G ++D+P+ A+ A+ +A +R L LVG S G A YPDLV S+V
Sbjct: 104 GHGLSDKPETGYEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVV 163
Query: 142 V 142
Sbjct: 164 A 164
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 11/134 (8%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALA-KTYEVYVPDFLFFGSS-----VTDRPDRTAS 96
+ +H VVL + L WQ L LA + Y V PD G S VT T
Sbjct: 23 SPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLT-- 80
Query: 97 FQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNA 156
F A+ + + +++L + LVG S G M+ +A + P ++ +++ + ES +
Sbjct: 81 FLAQ-IDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKES 139
Query: 157 ALERIGYESWVDFL 170
A+ ++ + +D+L
Sbjct: 140 AVNQL--TTCLDYL 151
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 80/234 (34%), Gaps = 43/234 (18%)
Query: 73 YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKGL-RKLGVEKCTLVGVSYGGMVGFKMAE 131
Y V + D F S D KGL L +++ LVG + GG A
Sbjct: 61 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFAL 120
Query: 132 MYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLPT 191
YPD + +++ GL S+ P + +K+ F + Y P+
Sbjct: 121 EYPDRIGKLIL-MGPGGLGPSM----------------FAPMPMEGIKLLFKL--YAEPS 161
Query: 192 -------LPAFVYKH--ILEALSDHRKERI----ELLQALVIS---------DKEFSIPH 229
L F+Y I E L R E I E L+ +IS D +
Sbjct: 162 YETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE 221
Query: 230 FSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPFVYNR 283
K + WG +D+ + L + +A + K GH E +NR
Sbjct: 222 IKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGHWAQWEHADEFNR 274
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 80/234 (34%), Gaps = 43/234 (18%)
Query: 73 YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKGLRK-LGVEKCTLVGVSYGGMVGFKMAE 131
Y V + D F S D KGL L +++ LVG + GG A
Sbjct: 64 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFAL 123
Query: 132 MYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLPT 191
YPD + +++ GL S+ P + +K+ F + Y P+
Sbjct: 124 EYPDRIGKLIL-MGPGGLGPSM----------------FAPMPMEGIKLLFKL--YAEPS 164
Query: 192 -------LPAFVYKH--ILEALSDHRKERI----ELLQALVIS---------DKEFSIPH 229
L F+Y I E L R E I E L+ +IS D +
Sbjct: 165 YETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE 224
Query: 230 FSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPFVYNR 283
K + WG +D+ + L + +A + K GH E +NR
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGHWAQWEHADEFNR 277
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 97 FQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCS 145
F A C A LG+E+ ++G S+GGM+G ++A P + S+ + S
Sbjct: 116 FHAVCTA-----LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNS 159
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 92/263 (34%), Gaps = 57/263 (21%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFF-GSSVTDRPDRTASFQAECMAKGL 106
+VLLH F W + + Y Y D + S+ + T + A +
Sbjct: 70 LVLLHGALFSST-XWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVF 128
Query: 107 RKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSV--------------MGLTES 152
LG+EK +G+S GG+ P+ V+S + +GLT S
Sbjct: 129 DNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILSPAETFLPFHHDFYKYALGLTAS 188
Query: 153 VSNAALERIGYESWVDF-------LLPKTADALKVQF---DIACYKLPTLPAFVYKHILE 202
G E+++++ L P K D + P F Y E
Sbjct: 189 N--------GVETFLNWXXNDQNVLHPIFVKQFKAGVXWQDGSRNPNPNADGFPYVFTDE 240
Query: 203 ALSDHRKERIELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKEQVGQNAT 262
L R R+ +L LL GE++ I+D A + +
Sbjct: 241 EL---RSARVPIL--------------------LLLGEHEVIYDPHSALHRASSFVPDIE 277
Query: 263 MESIEKAGHLVNLERPFVYNRQL 285
E I+ AGH+++ E+P N ++
Sbjct: 278 AEVIKNAGHVLSXEQPTYVNERV 300
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 99/265 (37%), Gaps = 51/265 (19%)
Query: 48 VVLLHPFGFDGILTW---QFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQ--AECM 102
VVLLH G G +W + LA+ + V D +G S D+ F A
Sbjct: 59 VVLLHGGG-PGAASWTNFSRNIAVLARHFHVLAVDQPGYGHS--DKRAEHGQFNRYAAMA 115
Query: 103 AKGL-RKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERI 161
KGL +LG+ + LVG S GG + A YP +V+ GL+
Sbjct: 116 LKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVL-MGPGGLS----------- 163
Query: 162 GYESWVDFLLPKTADALK--VQFDIACYKLPTLPAF----VYKH--ILEALSDHR---KE 210
++ P + +K +F +A + L AF VY I L D R
Sbjct: 164 -----INLFAPDPTEGVKRLSKFSVAPTR-ENLEAFLRVMVYDKNLITPELVDQRFALAS 217
Query: 211 RIELLQALVISDKEFSIPHFS------------QKIHLLWGENDKIFDMQVARNLKEQVG 258
E L A K F+ F Q + L+WG D++ + A + +
Sbjct: 218 TPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDGALVALKTI- 276
Query: 259 QNATMESIEKAGHLVNLERPFVYNR 283
A + + GH V +E+ +N+
Sbjct: 277 PRAQLHVFGQCGHWVQVEKFDEFNK 301
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASFQ--AECMAK 104
VVLLH F + +W+ Q+ ALA Y V D +G S R + + +
Sbjct: 36 VVLLHGFP-ESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVG 94
Query: 105 GLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV 141
L G E+ +VG +G V + A ++PD +V
Sbjct: 95 VLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVV 131
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASFQ--AECMAK 104
VVLLH F + +W+ Q+ ALA Y V D +G S R + + +
Sbjct: 30 VVLLHGFP-ESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVG 88
Query: 105 GLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV 141
L G E+ +VG +G V + A ++PD +V
Sbjct: 89 VLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVV 125
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 40 KKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQA 99
++ T A++LL + D + +++ + L + V VP++ G S ++ PD Q
Sbjct: 22 QRDTDGPAILLLPGWCHDHRV-YKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQV 80
Query: 100 ECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAE 131
+ + L +LGVE V S+GG V ++ E
Sbjct: 81 KDALEILDQLGVETFLPVSHSHGGWVLVELLE 112
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 40 KKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQA 99
++ T A++LL + D + +++ + L + V VP++ G S ++ PD Q
Sbjct: 25 QRDTDGPAILLLPGWCHDHRV-YKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQV 83
Query: 100 ECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAE 131
+ + L +LGVE V S+GG V ++ E
Sbjct: 84 KDALEILDQLGVETFLPVSHSHGGWVLVELLE 115
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 46 HAVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASF---QAEC 101
HAV+LL G + Q+ L K + V D +G S D A F A+
Sbjct: 24 HAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKD 83
Query: 102 MAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVS 154
++ L +K +L+G S GG+ A YP + MV+ + +T+ S
Sbjct: 84 AVDLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGANAYVTDEDS 136
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 99/265 (37%), Gaps = 51/265 (19%)
Query: 48 VVLLHPFGFDGILTW---QFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQ--AECM 102
VVLLH G G +W + LA+ + V D +G S D+ F A
Sbjct: 39 VVLLHGGG-PGAASWTNFSRNIAVLARHFHVLAVDQPGYGHS--DKRAEHGQFNRYAAMA 95
Query: 103 AKGL-RKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERI 161
KGL +LG+ + LVG + GG + A YP +V+ GL+
Sbjct: 96 LKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVL-MGPGGLS----------- 143
Query: 162 GYESWVDFLLPKTADALK--VQFDIACYKLPTLPAF----VYKH--ILEALSDHR---KE 210
++ P + +K +F +A + L AF VY I L D R
Sbjct: 144 -----INLFAPDPTEGVKRLSKFSVAPTR-ENLEAFLRVMVYDKNLITPELVDQRFALAS 197
Query: 211 RIELLQALVISDKEFSIPHFS------------QKIHLLWGENDKIFDMQVARNLKEQVG 258
E L A K F+ F Q + L+WG D++ + A + +
Sbjct: 198 TPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDGALVALKTI- 256
Query: 259 QNATMESIEKAGHLVNLERPFVYNR 283
A + + GH V +E+ +N+
Sbjct: 257 PRAQLHVFGQCGHWVQVEKFDEFNK 281
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 46 HAVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASF---QAEC 101
HAV+LL G + Q+ L K + V D +G S D A F A+
Sbjct: 24 HAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKD 83
Query: 102 MAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVS 154
++ L +K +L+G S GG+ A YP + MV+ + +T+ S
Sbjct: 84 AVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDS 136
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 66 VLALAKTYEVYV------PDFLFFGSSVTDRPDRTASFQAECMAKGLRK 108
VLA+ K V PDF F ++ D+P A FQ C G++K
Sbjct: 37 VLAMGKAVPANVFEQATYPDFFFNITNSNDKPALKAKFQRICDKSGIKK 85
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 79/234 (33%), Gaps = 43/234 (18%)
Query: 73 YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKGL-RKLGVEKCTLVGVSYGGMVGFKMAE 131
Y V + D F S D KGL L +++ LVG S GG A
Sbjct: 64 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFAL 123
Query: 132 MYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLPT 191
YPD + +++ GL S+ P + +K+ F + Y P+
Sbjct: 124 EYPDRIGKLIL-MGPGGLGPSM----------------FAPMPMEGIKLLFKL--YAEPS 164
Query: 192 -------LPAFVYKH--ILEALSDHRKERI----ELLQALVIS---------DKEFSIPH 229
L F+Y I E L R E I E L+ +IS D +
Sbjct: 165 YETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE 224
Query: 230 FSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPFVYNR 283
K + WG +D+ + L + +A + K G E +NR
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGQWAQWEHADEFNR 277
>pdb|3A3V|A Chain A, Crystal Structure Of Reducing-End-Xylose Releasing
Exo-Oligoxylanase Y198f Mutant
Length = 396
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 212 IELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKE 255
I+ + + SD F +PHF + L E D++F + A +E
Sbjct: 185 IKFIPEVEFSDPSFHLPHFYELFSLWANEEDRVFWKEAAEASRE 228
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 75 VYVPDFLFFGSSVTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYP 134
VYV + F S D P+ + L G K LVG S GG+ +A + P
Sbjct: 44 VYVANLSGFQSD--DGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAP 101
Query: 135 DLVESMVV 142
DLV S+
Sbjct: 102 DLVASVTT 109
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 75 VYVPDFLFFGSSVTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYP 134
VYV + F S D P+ + L G K LVG S GG+ +A + P
Sbjct: 44 VYVANLSGFQSD--DGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAP 101
Query: 135 DLVESMVV 142
DLV S+
Sbjct: 102 DLVASVTT 109
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 106 LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVM 147
L+ G EK + G+S GG+ K+ P +E +V C+ M
Sbjct: 80 LKNKGYEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPM 119
>pdb|3GA7|A Chain A, 1.55 Angstrom Crystal Structure Of An Acetyl Esterase From
Salmonella Typhimurium
Length = 326
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 50/142 (35%), Gaps = 19/142 (13%)
Query: 22 TQRTIEIEPGTILNIWVPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFL 81
TQR + N P TT+ AV P+G + Q + A Y ++ F+
Sbjct: 42 TQRQYYLLERRFWNADAPSXTTRTCAVPT--PYGDVTTRLYSPQPTSQATLYYLHGGGFI 99
Query: 82 FFGSSVTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV 141
DR R + R G CT++G+ Y YP +E V
Sbjct: 100 LGNLDTHDRIXRLLA----------RYTG---CTVIGIDYS----LSPQARYPQAIEETV 142
Query: 142 VTCSVMGLTESVSNAALERIGY 163
CS + +E+IG+
Sbjct: 143 AVCSYFSQHADEYSLNVEKIGF 164
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 79/234 (33%), Gaps = 43/234 (18%)
Query: 73 YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKGL-RKLGVEKCTLVGVSYGGMVGFKMAE 131
Y V + D F S D KGL L +++ LVG + GG A
Sbjct: 64 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFAL 123
Query: 132 MYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLPT 191
YPD + +++ GL S+ P + +K+ F + Y P+
Sbjct: 124 EYPDRIGKLIL-MGPGGLGPSM----------------FAPMPMEGIKLLFKL--YAEPS 164
Query: 192 -------LPAFVYKH--ILEALSDHRKERI----ELLQALVIS---------DKEFSIPH 229
L F+Y I E L R E I E L+ +IS D +
Sbjct: 165 YETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE 224
Query: 230 FSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPFVYNR 283
K + WG +D+ + L + +A + K G E +NR
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGQWAQWEHADEFNR 277
>pdb|1R1D|A Chain A, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
pdb|1R1D|B Chain B, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
Length = 247
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 106 LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCS 145
L+ G EK + G+S GG+ K+ P +E +V C+
Sbjct: 80 LKNKGYEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTXCA 117
>pdb|2DRO|A Chain A, Crystal Structure Of Reducing-End-Xylose Releasing
Exo-Oligoxylanase D263c Mutant
Length = 396
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 212 IELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKE 255
I+ + + SD + +PHF + L E D++F + A +E
Sbjct: 185 IKFIPEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEAAEASRE 228
>pdb|2DRQ|A Chain A, Crystal Structure Of Reducing-End-Xylose Releasing
Exo-Oligoxylanase D263g Mutant
Length = 396
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 212 IELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKE 255
I+ + + SD + +PHF + L E D++F + A +E
Sbjct: 185 IKFIPEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEAAEASRE 228
>pdb|2DRS|A Chain A, Crystal Structure Of Reducing-End-Xylose Releasing
Exo-Oligoxylanase D263s Mutant
Length = 396
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 212 IELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKE 255
I+ + + SD + +PHF + L E D++F + A +E
Sbjct: 185 IKFIPEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEAAEASRE 228
>pdb|1WU6|A Chain A, Crystal Structure Of Reducing-End-Xylose Releasing
Exo-Oligoxylanase E70a Mutant Complexed With Xylobiose
Length = 396
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 212 IELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKE 255
I+ + + SD + +PHF + L E D++F + A +E
Sbjct: 185 IKFIPEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEAAEASRE 228
>pdb|2DRR|A Chain A, Crystal Structure Of Reducing-End-Xylose Releasing
Exo-Oligoxylanase D263n Mutant
Length = 396
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 212 IELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKE 255
I+ + + SD + +PHF + L E D++F + A +E
Sbjct: 185 IKFIPEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEAAEASRE 228
>pdb|1WU4|A Chain A, Crystal Structure Of Reducing-End-Xylose Releasing
Exo-Oligoxylanase
pdb|1WU5|A Chain A, Crystal Structure Of Reducing-End-Xylose Releasing
Exo-Oligoxylanase Complexed With Xylose
Length = 396
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 212 IELLQALVISDKEFSIPHFSQKIHLLWGENDKIFDMQVARNLKE 255
I+ + + SD + +PHF + L E D++F + A +E
Sbjct: 185 IKFIPEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEAAEASRE 228
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine
Synthetase 1 In Complex With The Product
Length = 384
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 82 FFGSSVTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYG 122
F G T + DR+A++ A +AK L K G+ + LV VSY
Sbjct: 271 FSGKDYT-KVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYA 310
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 79/234 (33%), Gaps = 43/234 (18%)
Query: 73 YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKGL-RKLGVEKCTLVGVSYGGMVGFKMAE 131
Y V + D F S D KGL L +++ LVG + GG A
Sbjct: 64 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFAL 123
Query: 132 MYPDLVESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLPT 191
YPD + +++ GL S+ P + +K+ F + Y P+
Sbjct: 124 EYPDRIGKLIL-MGPGGLGPSM----------------FAPMPMEGIKLLFKL--YAEPS 164
Query: 192 -------LPAFVYKH--ILEALSDHRKERI----ELLQALVIS---------DKEFSIPH 229
L F+Y I E L R E I E L+ +IS D +
Sbjct: 165 YETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE 224
Query: 230 FSQKIHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPFVYNR 283
K + WG +D+ + L + +A + K G E +NR
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGAWAQWEHADEFNR 277
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O92|A Chain A, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O92|B Chain B, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O93|A Chain A, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O93|B Chain B, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O9T|B Chain B, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
pdb|1O9T|A Chain A, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
Length = 396
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 82 FFGSSVTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYG 122
F G T + DR+A++ A +AK L K G+ + LV VSY
Sbjct: 283 FSGKDYT-KVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYA 322
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFG-----SSVTDRPDRTASFQAECM 102
++LLH + ++ W LA + V D +G +SV + + A+
Sbjct: 28 LLLLHGYPQTHVM-WHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSKRVMAQDQ 86
Query: 103 AKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV 142
+ + KLG E+ +VG G V ++A +P V+ + +
Sbjct: 87 VEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLAL 126
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 45 KHAVVLLHPFG----FDGILTWQFQVLALAKTY--EVYVPDFLFFGSSVTDRPDRTASFQ 98
++ V+L+H F ++ + + + + +++ +VYV + F S D P+
Sbjct: 8 RYPVILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSD--DGPNGRGEQL 65
Query: 99 AECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV 142
+ + L G K L+G S GG+ +A + P LV S+
Sbjct: 66 LAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTT 109
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 45 KHAVVLLHPFG----FDGILTWQFQVLALAKTY--EVYVPDFLFFGSSVTDRPDRTASFQ 98
++ V+L+H F ++ + + + + +++ +VYV + F S D P+
Sbjct: 7 RYPVILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSD--DGPNGRGEQL 64
Query: 99 AECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV 142
+ + L G K L+G S GG+ +A + P LV S+
Sbjct: 65 LAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTT 108
>pdb|2P0S|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Abc Transporter Domain From Porphyromonas Gingivalis W83
pdb|2P0S|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Abc Transporter Domain From Porphyromonas Gingivalis W83
Length = 143
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 15/72 (20%)
Query: 164 ESWVDFLLPKTADALKVQFDIACYKLPTLPAFVYKHILEALSDHRKERIELLQALVISDK 223
+S +D +L D L+ +A Y LPA V HI LSD+ +SDK
Sbjct: 50 KSGIDAVLEIRQDLLEDPNAVAIYGYKQLPASVSNHISRILSDY------------LSDK 97
Query: 224 E---FSIPHFSQ 232
+ ++IP Q
Sbjct: 98 KIASYNIPDIKQ 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,218,980
Number of Sequences: 62578
Number of extensions: 318258
Number of successful extensions: 1003
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 116
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)