Query 022254
Match_columns 300
No_of_seqs 195 out of 410
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1348 Asparaginyl peptidases 100.0 7E-113 1E-117 814.9 23.6 261 33-300 26-286 (477)
2 PF01650 Peptidase_C13: Peptid 100.0 5.9E-85 1.3E-89 605.5 23.4 231 60-300 1-231 (256)
3 KOG1349 Gpi-anchor transamidas 100.0 1.2E-67 2.6E-72 485.6 17.0 230 57-296 26-258 (309)
4 COG5206 GPI8 Glycosylphosphati 100.0 1.9E-58 4.2E-63 427.8 18.3 228 58-295 27-257 (382)
5 PF00656 Peptidase_C14: Caspas 99.3 4.3E-12 9.4E-17 113.0 9.1 178 60-299 1-227 (248)
6 KOG1546 Metacaspase involved i 98.8 1.3E-07 2.7E-12 91.2 14.0 132 53-227 57-211 (362)
7 smart00115 CASc Caspase, inter 97.3 0.0063 1.4E-07 56.2 14.0 180 58-299 7-210 (241)
8 cd00032 CASc Caspase, interleu 97.1 0.013 2.7E-07 54.0 13.1 179 58-299 8-214 (243)
9 PF14538 Raptor_N: Raptor N-te 94.9 0.026 5.6E-07 49.5 3.6 73 138-229 71-153 (154)
10 PF12770 CHAT: CHAT domain 91.1 0.21 4.5E-06 45.7 3.3 68 132-223 122-201 (287)
11 COG4249 Uncharacterized protei 81.2 1.9 4E-05 43.2 4.1 60 167-230 132-207 (380)
12 KOG1017 Predicted uracil phosp 72.9 3.3 7.2E-05 38.6 3.0 23 79-101 204-226 (267)
13 COG2949 SanA Uncharacterized m 67.8 11 0.00024 35.3 5.2 39 58-99 92-130 (235)
14 PF03568 Peptidase_C50: Peptid 57.9 10 0.00022 37.6 3.3 43 168-227 308-350 (383)
15 PF11181 YflT: Heat induced st 54.7 18 0.00038 29.1 3.7 30 75-104 7-36 (103)
16 PRK10834 vancomycin high tempe 51.5 15 0.00032 34.7 3.2 39 58-99 80-118 (239)
17 COG2143 Thioredoxin-related pr 45.7 1.6E+02 0.0034 26.8 8.5 44 163-213 113-156 (182)
18 PF02698 DUF218: DUF218 domain 45.1 23 0.0005 29.6 3.1 35 63-99 41-75 (155)
19 cd06259 YdcF-like YdcF-like. Y 44.1 20 0.00043 29.8 2.6 38 60-99 35-72 (150)
20 KOG3332 N-acetylglucosaminyl p 43.8 55 0.0012 31.0 5.6 63 34-105 47-111 (247)
21 PF05582 Peptidase_U57: YabG p 41.9 24 0.00053 34.2 3.1 101 113-235 104-222 (287)
22 PF01364 Peptidase_C25: Peptid 39.4 14 0.0003 36.0 1.0 47 170-225 239-285 (378)
23 PF03415 Peptidase_C11: Clostr 38.7 26 0.00055 35.0 2.8 73 137-225 76-160 (397)
24 PF07999 RHSP: Retrotransposon 38.1 2.3E+02 0.0049 29.0 9.5 119 171-299 168-295 (439)
25 PRK10494 hypothetical protein; 37.6 30 0.00065 32.6 2.9 39 59-99 120-158 (259)
26 cd06183 cyt_b5_reduct_like Cyt 35.4 21 0.00045 31.5 1.4 35 59-100 200-234 (234)
27 KOG1552 Predicted alpha/beta h 33.6 41 0.00088 32.2 3.1 42 77-121 112-161 (258)
28 PF10686 DUF2493: Protein of u 33.4 42 0.00091 25.6 2.6 21 62-82 5-25 (71)
29 TIGR02855 spore_yabG sporulati 32.9 57 0.0012 31.6 4.0 101 113-235 103-221 (283)
30 PF14681 UPRTase: Uracil phosp 29.0 41 0.00088 30.4 2.2 23 79-101 136-158 (207)
31 COG4566 TtrR Response regulato 28.7 58 0.0013 30.1 3.1 60 132-207 54-122 (202)
32 TIGR01689 EcbF-BcbF capsule bi 26.2 1.1E+02 0.0024 25.9 4.2 41 59-99 39-85 (126)
33 COG5155 ESP1 Separase, a prote 26.1 39 0.00084 38.4 1.8 43 168-227 1489-1531(1622)
34 KOG2599 Pyridoxal/pyridoxine/p 26.0 3.4E+02 0.0075 26.6 7.9 72 193-279 165-239 (308)
35 PF00233 PDEase_I: 3'5'-cyclic 25.7 39 0.00085 31.1 1.5 23 71-93 1-24 (237)
36 cd01906 proteasome_protease_Hs 25.2 1.7E+02 0.0037 24.8 5.3 110 160-289 32-154 (182)
37 PF01972 SDH_sah: Serine dehyd 23.8 1.9E+02 0.0041 28.2 5.7 55 165-219 45-99 (285)
38 PRK10649 hypothetical protein; 23.8 43 0.00094 35.1 1.6 17 165-181 449-465 (577)
39 KOG1387 Glycosyltransferase [C 23.8 75 0.0016 32.3 3.1 33 134-175 82-115 (465)
40 PF02662 FlpD: Methyl-viologen 23.0 1.2E+02 0.0026 25.4 3.9 41 60-100 53-99 (124)
41 PF06866 DUF1256: Protein of u 23.0 1.1E+02 0.0023 27.5 3.6 31 191-222 67-97 (163)
42 cd06212 monooxygenase_like The 22.8 54 0.0012 29.1 1.8 31 61-99 198-228 (232)
43 COG0657 Aes Esterase/lipase [L 22.5 95 0.0021 28.9 3.5 24 77-100 130-157 (312)
44 TIGR02911 sulfite_red_B sulfit 22.4 80 0.0017 29.2 2.9 40 60-107 190-229 (261)
45 COG2194 Predicted membrane-ass 22.2 45 0.00097 35.1 1.3 15 166-180 442-456 (555)
46 KOG1654 Microtubule-associated 22.1 84 0.0018 26.7 2.7 35 136-181 52-86 (116)
47 PLN02541 uracil phosphoribosyl 21.8 99 0.0021 29.2 3.4 23 79-101 172-194 (244)
48 TIGR02841 spore_YyaC putative 21.1 99 0.0022 27.1 3.0 31 191-222 43-73 (140)
49 PRK10629 EnvZ/OmpR regulon mod 20.7 1.8E+02 0.0038 24.8 4.4 36 60-99 35-71 (127)
50 PF10116 Host_attach: Protein 20.0 1.5E+02 0.0032 24.8 3.8 38 191-228 72-109 (138)
No 1
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-113 Score=814.88 Aligned_cols=261 Identities=74% Similarity=1.288 Sum_probs=249.8
Q ss_pred cCccccccccCCCCCCCCCCCCCCCCCeeEEEEeccCCCccchhhhHHHHHHHHHHhCCCCCCCEEEEecCccccCCCCC
Q 022254 33 LPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENP 112 (300)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wAVLVagS~gw~NYRHqadv~~~Yq~Lk~~GipdenIIlm~~DDiA~n~~Np 112 (300)
+|.-++.|++| .++++..|++||||||||+||||||||||||||||+||++|+|+||||+|||||||+||+||
T Consensus 26 ~~~la~~~~~p-------~d~~ddggt~waVLVAGSngyyNYRHQADvcHAYqiLrkgGikeEnIvv~MYDDIA~~~~NP 98 (477)
T KOG1348|consen 26 LPLLASGFARP-------ADDDDDGGTRWAVLVAGSNGYYNYRHQADVCHAYQILRKGGIKEENIVVMMYDDIANNEENP 98 (477)
T ss_pred CccccccccCc-------CcCCccCceeEEEEEecCCcccchhhhhhHHHHHHHHHhcCCCchhEEEEEehhhhcCCCCC
Confidence 44444557765 22333348999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeeCCCCCCccCCcCcCCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCc
Q 022254 113 RPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYI 192 (300)
Q Consensus 113 ~pG~i~n~~~g~nvY~gv~iDY~g~~VT~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L 192 (300)
+||+|||+|+|+|||+||++||+|++||++||++||+|++++++||||||++|+|||||||||+||||||.|+||+++.|
T Consensus 99 rpG~iiN~P~G~DvY~GvpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pGvl~mP~~~~l 178 (477)
T KOG1348|consen 99 RPGVIINRPNGKDVYQGVPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPGVLGMPTSPDL 178 (477)
T ss_pred CCceeecCCCchhhhcCCCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCceEecCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCceEEEEeccccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCccchhhHH
Q 022254 193 YADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLY 272 (300)
Q Consensus 193 ~a~dL~~~L~~m~~~~~Ykklvf~vEAC~SGSmfe~llp~~~nV~~iTASn~~EsSys~yc~~~~~~~~~~~~TclgD~f 272 (300)
+++||+++|++||+.++||+||||+|||+|||||+++||+++||||+||||+.||||+||||++.|+||.++.|||||+|
T Consensus 179 ~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psppse~~tcLGDly 258 (477)
T KOG1348|consen 179 YAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSPPSEYSTCLGDLY 258 (477)
T ss_pred hHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCChhhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCChhhHHHHHHHHHcC
Q 022254 273 SIAWMEDSDIHNLRTETLHQQYELVRSH 300 (300)
Q Consensus 273 S~~wme~~~~~~l~~etl~~q~~~vk~~ 300 (300)
||+||||+|.|||++|||+|||++||++
T Consensus 259 SV~WmeDSd~hdL~kETL~qQYhlVK~r 286 (477)
T KOG1348|consen 259 SVNWMEDSDVHDLKKETLHQQYHLVKKR 286 (477)
T ss_pred eeeeeccCccccchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999974
No 2
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=100.00 E-value=5.9e-85 Score=605.49 Aligned_cols=231 Identities=57% Similarity=0.997 Sum_probs=223.7
Q ss_pred eeEEEEeccCCCccchhhhHHHHHHHHHHhCCCCCCCEEEEecCccccCCCCCCCCeEeeCCCCCCccCCcCcCCCCCCC
Q 022254 60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDV 139 (300)
Q Consensus 60 ~wAVLVagS~gw~NYRHqadv~~~Yq~Lk~~GipdenIIlm~~DDiA~n~~Np~pG~i~n~~~g~nvY~gv~iDY~g~~V 139 (300)
+||||||||++|+|||||||+|+|||+||++|+|+||||||||||+||||+||+||+||++|++.|+|+||+|||+|.+|
T Consensus 1 ~wAvlvagS~~~~NYRh~ad~~~~Y~~l~~~G~~~~~Iil~~~dd~a~~~~Np~~g~i~~~~~~~n~y~~~~iDY~g~~v 80 (256)
T PF01650_consen 1 NWAVLVAGSNGWFNYRHQADVCHAYQLLKRNGIPDENIILMMYDDIACNPRNPFPGKIFNDPDGTNVYKGVEIDYRGEDV 80 (256)
T ss_pred CEEEEEeccCCceeeeEehHHHHHHHHHHHcCCCCceEEEEecCCccchhhCCCCceEEeCCCcccccCCcccccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecc
Q 022254 140 TVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEA 219 (300)
Q Consensus 140 T~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklvf~vEA 219 (300)
|+++|++||+|+++ + +++|||+++++|+|||||+||||+|+|+||+.+.|+++||+++|++|+++++||||||++||
T Consensus 81 ~~~~fl~vL~G~~~-~--~~~kvl~s~~~D~vfiy~~~HG~~~~l~~~~~~~l~~~~L~~~L~~m~~~~~y~~lv~~vea 157 (256)
T PF01650_consen 81 TPENFLNVLTGDKS-V--PSGKVLNSTENDNVFIYFTGHGGPGFLKFPDGEELTADDLADALDKMHEKKRYKKLVFVVEA 157 (256)
T ss_pred CHHHHHHHhcCCCC-C--CccccccCCCCCeEEEEEeccCCCCcccCCCcccccHHHHHHHHHHHHhhCCcceEEEEEec
Confidence 99999999999998 4 57899999999999999999999999999988899999999999999999999999999999
Q ss_pred ccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCccchhhHHHHHHHhhcccCCCChhhHHHHHHHHHc
Q 022254 220 CESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVRS 299 (300)
Q Consensus 220 C~SGSmfe~llp~~~nV~~iTASn~~EsSys~yc~~~~~~~~~~~~TclgD~fS~~wme~~~~~~l~~etl~~q~~~vk~ 299 (300)
|||||||++ |++++||++||||+++|+||+|+|+. ++++|||||+||++||++++.++++.+||.+||+.||+
T Consensus 158 C~SGs~~~~-L~~~~nv~~iTAa~~~e~Sy~~~~~~------~~~~~~l~d~fs~~~m~~~~~~~~~~~Tl~~~f~~v~~ 230 (256)
T PF01650_consen 158 CYSGSFFEG-LLKSPNVYVITAANADESSYGCYCSD------DSIGTYLGDAFSYNWMEDSDSHPLSEETLDDQFEYVKR 230 (256)
T ss_pred ccccchhhc-cCCCCCEEEEecCCcccccccccccc------cccccEeHHHHHHHhhhhhccCCccccCHHHHHHHHHH
Confidence 999999999 56889999999999999999999932 58999999999999999999999999999999999997
Q ss_pred C
Q 022254 300 H 300 (300)
Q Consensus 300 ~ 300 (300)
+
T Consensus 231 ~ 231 (256)
T PF01650_consen 231 K 231 (256)
T ss_pred h
Confidence 4
No 3
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-67 Score=485.59 Aligned_cols=230 Identities=28% Similarity=0.532 Sum_probs=214.1
Q ss_pred CCCeeEEEEeccCCCccchhhhHHHHHHHHHHhCCCCCCCEEEEecCccccCCCCCCCCeEeeCCC-CCCccC-CcCcCC
Q 022254 57 VGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPH-GDDVYK-GVPKDY 134 (300)
Q Consensus 57 ~~~~wAVLVagS~gw~NYRHqadv~~~Yq~Lk~~GipdenIIlm~~DDiA~n~~Np~pG~i~n~~~-g~nvY~-gv~iDY 134 (300)
+++||||||++||+|+||||.|||+.+|+.+||+||||+|||+|++||+|||+|||+||.+|++.+ +.|+|. .|++||
T Consensus 26 htnNwAVLv~tSRfwfNYRH~aNvl~~YrsvKrlGipDsqIilmladd~acn~RN~~pg~Vy~n~~~~~nlygd~vevdy 105 (309)
T KOG1349|consen 26 HTNNWAVLVCTSRFWFNYRHVANVLSVYRSVKRLGIPDSQIILMLADDMACNSRNPRPGTVYNNENHALNLYGDDVEVDY 105 (309)
T ss_pred ccCceEEEEecchhhhhHHHHHHHHHHHHHHHHcCCCcccEEEEeccccccccCCCCCcceeccccccccccCCcceeec
Confidence 689999999999999999999999999999999999999999999999999999999999999885 689996 679999
Q ss_pred CCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEE
Q 022254 135 TGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLV 214 (300)
Q Consensus 135 ~g~~VT~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklv 214 (300)
+|.+||+|||+++|+||.+.-||+|+| |.+++++|||||+|||||++||||||.++|+.+||++++++|++++||++++
T Consensus 106 rgyevtvEnflr~LTgR~~~~tprSKr-lltDe~SNIlIYmtGHGgd~FlKFqd~eelts~dLadai~qm~e~~Ryneil 184 (309)
T KOG1349|consen 106 RGYEVTVENFLRVLTGRHPNNTPRSKR-LLTDEGSNILIYLTGHGGDGFLKFQDAEELTSDDLADAIQQMWEKKRYNEIL 184 (309)
T ss_pred ccchhHHHHHHHHHcCCCCCCCchhhh-hcccCCCcEEEEEccCCCccceecccHHHhhhHHHHHHHHHHHHhhhhceEE
Confidence 999999999999999999999999977 5589999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCccchhhHHHHHHHhhcccC-CCChhhHHHH
Q 022254 215 FYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIH-NLRTETLHQQ 293 (300)
Q Consensus 215 f~vEAC~SGSmfe~llp~~~nV~~iTASn~~EsSys~yc~~~~~~~~~~~~TclgD~fS~~wme~~~~~-~l~~etl~~q 293 (300)
|++|||+|.||++++.. |||+++++|.-+|+||+++.++ +++.++-|-|++..++..++. .-+..||++.
T Consensus 185 ~miDTCQaasly~~~~s--PNVLav~SS~~ge~SySh~~d~-------~Igv~vIDrftyy~l~flek~~~~~~~~l~dl 255 (309)
T KOG1349|consen 185 FMIDTCQAASLYERFYS--PNVLAVASSLVGEPSYSHHSDS-------DIGVYVIDRFTYYTLEFLEKGIGAKNRTLQDL 255 (309)
T ss_pred EEeeccchHHHHHhhcC--CCeEEEeecccCCcccccCCCc-------ccceeeeccchHHHHHHHHhcccchhhhHHHH
Confidence 99999999999999854 5999999999999999999875 788999999998888888874 4455578887
Q ss_pred HHH
Q 022254 294 YEL 296 (300)
Q Consensus 294 ~~~ 296 (300)
|+.
T Consensus 256 ~~s 258 (309)
T KOG1349|consen 256 FDS 258 (309)
T ss_pred HHh
Confidence 754
No 4
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-58 Score=427.82 Aligned_cols=228 Identities=25% Similarity=0.463 Sum_probs=205.3
Q ss_pred CCeeEEEEeccCCCccchhhhHHHHHHHHHHhCCCCCCCEEEEecCccccCCCCCCCCeEeeCCC-CCCccC-CcCcCCC
Q 022254 58 GTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPH-GDDVYK-GVPKDYT 135 (300)
Q Consensus 58 ~~~wAVLVagS~gw~NYRHqadv~~~Yq~Lk~~GipdenIIlm~~DDiA~n~~Np~pG~i~n~~~-g~nvY~-gv~iDY~ 135 (300)
++|||||+++||+|+||||.|||+.+|+.+||+||||+|||+|.|||.|||.||-+||.+||+.+ +.++|. .++|||+
T Consensus 27 tnNwAvLlstSRfwfNYRHmANVl~~Yr~vkrlGipDsQIilm~~dd~acnsRnlfpgsvf~N~Dra~dlyge~~eidY~ 106 (382)
T COG5206 27 TNNWAVLLSTSRFWFNYRHMANVLVFYRVVKRLGIPDSQIILMSYDDQACNSRNLFPGSVFNNSDRAGDLYGEDSEIDYS 106 (382)
T ss_pred CCceEEEEecccceeehhhhhhHHHHHHHHHHcCCCcceEEEEechhhhhhhcccCCcccccCcccccceeCcccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999877 578884 7899999
Q ss_pred CCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEE
Q 022254 136 GEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVF 215 (300)
Q Consensus 136 g~~VT~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklvf 215 (300)
|.+||+|+|.+.|+.+...-+|.|++ +..++++||||||+||||++||+|+|-++++++||++++++|+++|||++++|
T Consensus 107 gyevTve~firLLt~r~~en~p~sKr-lltdE~SNIfIYmtGHGgd~FlKFqdaeemtseDladai~ql~~~kRyNeIlf 185 (382)
T COG5206 107 GYEVTVEVFIRLLTARSGENHPKSKR-LLTDESSNIFIYMTGHGGDAFLKFQDAEEMTSEDLADAISQLAAKKRYNEILF 185 (382)
T ss_pred cccchHHHHHHHHHhhccCCChhhhh-hcccccCcEEEEEccCCCccceecccHHHhhhHHHHHHHHHHHHhhhhceEEE
Confidence 99999999999999988888887766 55789999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCccchhhHHHHHHHhhccc-CCCChhhHHHHH
Q 022254 216 YLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDI-HNLRTETLHQQY 294 (300)
Q Consensus 216 ~vEAC~SGSmfe~llp~~~nV~~iTASn~~EsSys~yc~~~~~~~~~~~~TclgD~fS~~wme~~~~-~~l~~etl~~q~ 294 (300)
++||||+.+|+++... |||+++.+|.-+||||+++.+. +++.-.-|-|++..++..++ .--++-||++.+
T Consensus 186 miDTCQAnaly~k~ys--PNvLavgsSeig~ssyShhsd~-------~IgvaVIDrFty~~l~fle~id~~skltlqDL~ 256 (382)
T COG5206 186 MIDTCQANALYDKSYS--PNVLAVGSSEIGQSSYSHHSDS-------LIGVAVIDRFTYFFLKFLEKIDIGSKLTLQDLL 256 (382)
T ss_pred EeeccccchhhhhccC--CceEEEeccccCCccccccchh-------hhhHHHhhcchHHHHHHHhhcCcCCeeEHHHHH
Confidence 9999999999998754 5999999999999999999875 56666777777777666665 234556666665
Q ss_pred H
Q 022254 295 E 295 (300)
Q Consensus 295 ~ 295 (300)
.
T Consensus 257 ~ 257 (382)
T COG5206 257 A 257 (382)
T ss_pred H
Confidence 4
No 5
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=99.33 E-value=4.3e-12 Score=112.97 Aligned_cols=178 Identities=22% Similarity=0.295 Sum_probs=121.8
Q ss_pred eeEEEEeccCCCc-cchhh--hHHHHHHHHHHhCCCCCCCEEEEecCccccCCCCCCCCeEeeCCCCCCccCCcCcCCCC
Q 022254 60 RWAVLLAGSNGFW-NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTG 136 (300)
Q Consensus 60 ~wAVLVagS~gw~-NYRHq--adv~~~Yq~Lk~~GipdenIIlm~~DDiA~n~~Np~pG~i~n~~~g~nvY~gv~iDY~g 136 (300)
+|||||+-+.+=. +-++- .|+-.+.+.|++.|++.++| ++ ++
T Consensus 1 ~~AliIg~~~y~~~~~L~~~~~D~~~~~~~L~~~gf~~~~~-l~--~~-------------------------------- 45 (248)
T PF00656_consen 1 KRALIIGVNYYQNPPPLPGAVNDAEAMAEALEKLGFDVENI-LI--DN-------------------------------- 45 (248)
T ss_dssp EEEEEEEESSTSSTCHCTTHHHHHHHHHHHHHHTTEEEEEE-EE--ES--------------------------------
T ss_pred CEEEEEEeeCCCCCCCCCCHHHHHHHHHHHHHHcCCceeec-cc--cc--------------------------------
Confidence 5999998876411 22332 79999999999999999999 33 22
Q ss_pred CCCCHHHHHHHHcCCCCCCCCCCCccc-cCCCCCeEEEEeecCCCC--C----cccCCCCCCcCHHH---HHHHHHHHHH
Q 022254 137 EDVTVENFFAVILGNKTALTGGSGKVV-DSGPNDHIFIFYSDHGGP--G----VLGMPTSRYIYADE---LIDVLKKKHA 206 (300)
Q Consensus 137 ~~VT~enfl~VL~G~~~~~t~~s~kvl-~S~~~D~VFIY~tgHGg~--g----~l~fpd~~~L~a~d---L~~~L~~m~~ 206 (300)
+|.+++.+.|+- ++ ...++|.++|||+|||.. + ...-.++..+..+. +.+.|..+..
T Consensus 46 --~t~~~i~~~l~~-----------l~~~~~~~D~~~~yfsGHG~~~~~~~~~~~~~~d~~~~~~d~~~~~~~~l~~~~~ 112 (248)
T PF00656_consen 46 --ATRANILKALRE-----------LLQRAQPGDSVVFYFSGHGIQVDGEGGDEDSGYDGYLLPLDANLILDDELRDLLC 112 (248)
T ss_dssp --SSHHHHHHHHHH-----------HHTSGGTCSEEEEEEESEEETETTCCSTEEEETSSEEEEHHHHEEHHHHTSTTTT
T ss_pred --hHHHHHHHHHhh-----------hhccCCCCCeeEEEEeccccccCCccCcccccccceeeecchhhhHHHHHhhhhh
Confidence 688899998882 12 123789999999999964 1 11111333344554 6777776655
Q ss_pred cC-CCc-eEEEEeccccccccccccC----------------------------CCCCcEEEEeecCCCCccccccCCCC
Q 022254 207 SG-NYK-SLVFYLEACESGSIFEGLL----------------------------PEGLNIYATTASNAEESSWGTYCPGE 256 (300)
Q Consensus 207 ~~-~Yk-klvf~vEAC~SGSmfe~ll----------------------------p~~~nV~~iTASn~~EsSys~yc~~~ 256 (300)
+. .-+ + +|++|+|+||.+..... +...++++++|+.++|.||.. +
T Consensus 113 ~~~~~~~k-~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~~~~~s~e~--~-- 187 (248)
T PF00656_consen 113 KSLPKKPK-LFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPPEDPNRSDVPSPSGFIVLSASRPGQTSYED--S-- 187 (248)
T ss_dssp GGGTTS-E-EEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCCSSCCSEEEETTTSEEEEESSSTTBCEEEE--C--
T ss_pred hhccCCcc-EEeeccccCCccCCccccccccccccccccccccccccccccccccCCCCcEEEEeccccceeecc--c--
Confidence 42 122 4 99999999999876310 123489999999999999998 1
Q ss_pred CCCCCCCCccchhhHHHHHHHhhcccC------CCChhhHHHHHHHHHc
Q 022254 257 IPGPPPEYSTCLGDLYSIAWMEDSDIH------NLRTETLHQQYELVRS 299 (300)
Q Consensus 257 ~~~~~~~~~TclgD~fS~~wme~~~~~------~l~~etl~~q~~~vk~ 299 (300)
+...+ +|+.++++-+..+ .-..++|.+.+..|++
T Consensus 188 ----~~~~g-----~ft~~L~~~L~~~~~~~~~~~~~~~l~~~~~~v~~ 227 (248)
T PF00656_consen 188 ----PGSGG-----LFTYALLEALKGNAADDPNQSWDELLEELLTEVNQ 227 (248)
T ss_dssp ----TTTEE-----HHHHHHHHHHHHHTTTSTTCCTTSBHHHHHHHHHH
T ss_pred ----CccCH-----HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHh
Confidence 12344 9999999988543 2334667777766654
No 6
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.3e-07 Score=91.25 Aligned_cols=132 Identities=22% Similarity=0.317 Sum_probs=92.0
Q ss_pred CCCCCCCeeEEEEeccCCCccchhh-----hHHHHHHHHH-HhCCCCCCCEEEEecCccccCCCCCCCCeEeeCCCCCCc
Q 022254 53 DDDSVGTRWAVLLAGSNGFWNYRHQ-----ADICHAYQLL-RKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDV 126 (300)
Q Consensus 53 ~~~~~~~~wAVLVagS~gw~NYRHq-----adv~~~Yq~L-k~~GipdenIIlm~~DDiA~n~~Np~pG~i~n~~~g~nv 126 (300)
....++++-||||.-+ |-|=+++ .||-+|.+.| .+.||+.|+|++|.-+| ++|.
T Consensus 57 ~~~~~gkrrAvLiGIN--Y~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~-----~s~~------------- 116 (362)
T KOG1546|consen 57 YPQMAGKRRAVLIGIN--YPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTD-----ESPV------------- 116 (362)
T ss_pred CccccccceEEEEeec--CCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCC-----Cccc-------------
Confidence 4455789999999752 3333333 5999999998 77999999998886554 1220
Q ss_pred cCCcCcCCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC-------CcccC------CCCC---
Q 022254 127 YKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP-------GVLGM------PTSR--- 190 (300)
Q Consensus 127 Y~gv~iDY~g~~VT~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~-------g~l~f------pd~~--- 190 (300)
.-.|.+|+++.|.- . |....++|-+|+=|||||+. +.-+| -|.+
T Consensus 117 ----------~~PT~~Nir~Al~w---L-------V~~aq~gD~LvfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G 176 (362)
T KOG1546|consen 117 ----------RIPTGKNIRRALRW---L-------VESAQPGDSLVFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQG 176 (362)
T ss_pred ----------ccCcHHHHHHHHHH---H-------HhcCCCCCEEEEEecCCCCcCCCCCCCCCCCCcceeecccccccc
Confidence 12367899888882 1 22345789999999999982 12222 1222
Q ss_pred -CcCHHHHHHHHHHHHHcCCCceEEEEecccccccccc
Q 022254 191 -YIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (300)
Q Consensus 191 -~L~a~dL~~~L~~m~~~~~Ykklvf~vEAC~SGSmfe 227 (300)
.|+++++....+.+. .=-++-+++|+|+||++.+
T Consensus 177 ~iIdDe~~r~lV~plp---~G~~lt~I~DSCHSGgliD 211 (362)
T KOG1546|consen 177 PIIDDEIFRILVRPLP---KGCKLTAISDSCHSGGLID 211 (362)
T ss_pred cccchHHHHHHHhccC---CCceEEEEeecccCCCccc
Confidence 567777777777763 3358899999999999988
No 7
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=97.34 E-value=0.0063 Score=56.18 Aligned_cols=180 Identities=16% Similarity=0.222 Sum_probs=109.1
Q ss_pred CCeeEEEEeccCCCc-cchhh--hHHHHHHHHHHhCCCCCCCEEEEecCccccCCCCCCCCeEeeCCCCCCccCCcCcCC
Q 022254 58 GTRWAVLLAGSNGFW-NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDY 134 (300)
Q Consensus 58 ~~~wAVLVagS~gw~-NYRHq--adv~~~Yq~Lk~~GipdenIIlm~~DDiA~n~~Np~pG~i~n~~~g~nvY~gv~iDY 134 (300)
....|+||+-+++-. .=|.- .|+-.+-++|++.|+. +.+ +.
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~---V~~--~~------------------------------- 50 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYE---VHV--KN------------------------------- 50 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCE---EEE--ec-------------------------------
Confidence 477999998776521 11222 3899999999999992 222 11
Q ss_pred CCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCCceE
Q 022254 135 TGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNYKSL 213 (300)
Q Consensus 135 ~g~~VT~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~-~~~~Ykkl 213 (300)
+.|.+.+.+.|..-. .+ .+-...|-+++||.+||+.++|.-.|+..+.-++|.+.|..-. ..-.-|=.
T Consensus 51 ---dlt~~em~~~l~~~~-------~~-~~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~c~~L~~kPK 119 (241)
T smart00115 51 ---NLTAEEMLEELKEFA-------ER-PEHSDSDSFVCVLLSHGEEGGIYGTDHSPLPLDEIFSLFNGDNCPSLAGKPK 119 (241)
T ss_pred ---CCCHHHHHHHHHHHH-------hc-cccCCCCEEEEEEcCCCCCCeEEEecCCEEEHHHHHHhccccCChhhcCCCc
Confidence 256777777776311 11 1223468899999999999988877776677788777773211 01123446
Q ss_pred EEEeccccccccccc--------------------cCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCccchhhHHH
Q 022254 214 VFYLEACESGSIFEG--------------------LLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYS 273 (300)
Q Consensus 214 vf~vEAC~SGSmfe~--------------------llp~~~nV~~iTASn~~EsSys~yc~~~~~~~~~~~~TclgD~fS 273 (300)
+|+++||...-+-.+ .+|...++++.=|+.++.-||-. +..++ +|-
T Consensus 120 lffiqACRg~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~D~li~ysT~pG~va~r~----------~~~gS----~fi 185 (241)
T smart00115 120 LFFIQACRGDELDGGVPVEDDVDDPPTEFEDDAIYKIPVEADFLAAYSTTPGYVSWRN----------PTRGS----WFI 185 (241)
T ss_pred EEEEeCCCCCCCCCCeecccccccccccccccccccCCCcCcEEEEEeCCCCeEeecC----------CCCCc----hHH
Confidence 899999975422111 12333356666666666555432 12333 666
Q ss_pred HHHHhhcccCCCChhhHHHHHHHHHc
Q 022254 274 IAWMEDSDIHNLRTETLHQQYELVRS 299 (300)
Q Consensus 274 ~~wme~~~~~~l~~etl~~q~~~vk~ 299 (300)
-+..+.+..+ -..+.|.+.+..|++
T Consensus 186 ~~L~~~l~~~-~~~~~l~~ilt~V~~ 210 (241)
T smart00115 186 QSLCQVLKEY-ARSLDLLDILTEVNR 210 (241)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHH
Confidence 6666666554 345678888877764
No 8
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=97.08 E-value=0.013 Score=54.03 Aligned_cols=179 Identities=15% Similarity=0.188 Sum_probs=109.1
Q ss_pred CCeeEEEEeccCCCc--cchh--hhHHHHHHHHHHhCCCCCCCEEEEecCccccCCCCCCCCeEeeCCCCCCccCCcCcC
Q 022254 58 GTRWAVLLAGSNGFW--NYRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKD 133 (300)
Q Consensus 58 ~~~wAVLVagS~gw~--NYRH--qadv~~~Yq~Lk~~GipdenIIlm~~DDiA~n~~Np~pG~i~n~~~g~nvY~gv~iD 133 (300)
....|+||.-+++-. .=|. ..|+-.+-++|++.|+ .+.+ +.
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF---~V~~--~~------------------------------ 52 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGY---EVEV--KN------------------------------ 52 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCC---EEEE--eC------------------------------
Confidence 578999998776643 1232 2689999999999999 2222 11
Q ss_pred CCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCCce
Q 022254 134 YTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNYKS 212 (300)
Q Consensus 134 Y~g~~VT~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~-~~~~Ykk 212 (300)
++|.+.+.+.|..-. .+ +....|-+++||.+||..+.|.-.|...+.-++|.+.|..-. .+-.-|=
T Consensus 53 ----nlt~~~~~~~l~~f~-------~~--~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kP 119 (243)
T cd00032 53 ----NLTAEEILEELKEFA-------SP--DHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKP 119 (243)
T ss_pred ----CCCHHHHHHHHHHHH-------hc--cCCCCCeeEEEECCCCCCCEEEEecCcEEEHHHHHHhhccCCCccccCCC
Confidence 256777777776311 01 224567899999999999988777766677778777765211 1122355
Q ss_pred EEEEeccccccccccc-----------------------cCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCccchh
Q 022254 213 LVFYLEACESGSIFEG-----------------------LLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLG 269 (300)
Q Consensus 213 lvf~vEAC~SGSmfe~-----------------------llp~~~nV~~iTASn~~EsSys~yc~~~~~~~~~~~~Tclg 269 (300)
.+|+++||...-+-.+ ..|...++++.=|+.++.-||-. +..++
T Consensus 120 Kl~~iqACRg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~lv~ysT~pG~~a~r~----------~~~gS--- 186 (243)
T cd00032 120 KLFFIQACRGDELDLGVEVDSGADEPPDVETEAEDDAVQTIPVEADFLVAYSTVPGYVSWRN----------TKKGS--- 186 (243)
T ss_pred cEEEEECCCCCcCCCceeccCccccccccccccccccccCCCCcccEEEEecCCCCeEeecC----------CCCCC---
Confidence 6899999987654321 12333366666666666655532 11222
Q ss_pred hHHHHHHHhhcccCCCChhhHHHHHHHHHc
Q 022254 270 DLYSIAWMEDSDIHNLRTETLHQQYELVRS 299 (300)
Q Consensus 270 D~fS~~wme~~~~~~l~~etl~~q~~~vk~ 299 (300)
+|--++.+.+..+ -..+.|.+.+..|++
T Consensus 187 -~fi~~l~~~l~~~-~~~~~l~~il~~V~~ 214 (243)
T cd00032 187 -WFIQSLCQVLRKY-AHSLDLLDILTKVNR 214 (243)
T ss_pred -EeHHHHHHHHHHh-CCCCcHHHHHHHHHH
Confidence 4555555555432 223567777777654
No 9
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=94.94 E-value=0.026 Score=49.45 Aligned_cols=73 Identities=18% Similarity=0.359 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCC------cccCCCCC----CcCHHHHHHHHHHHHHc
Q 022254 138 DVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG------VLGMPTSR----YIYADELIDVLKKKHAS 207 (300)
Q Consensus 138 ~VT~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g------~l~fpd~~----~L~a~dL~~~L~~m~~~ 207 (300)
+.|++.+.+.+..-. ...+++.|++.|.|||-|. +..|.+.- .++-.||...+..
T Consensus 71 dpt~e~~~~~~~~~R-----------~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~---- 135 (154)
T PF14538_consen 71 DPTVEDLKRLCQSLR-----------RNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGS---- 135 (154)
T ss_pred CCCHHHHHHHHHHHH-----------hhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCC----
Confidence 468888888777421 2334689999999999984 44444332 3788888888876
Q ss_pred CCCceEEEEecccccccccccc
Q 022254 208 GNYKSLVFYLEACESGSIFEGL 229 (300)
Q Consensus 208 ~~Ykklvf~vEAC~SGSmfe~l 229 (300)
-.+||.|+..||++++.+
T Consensus 136 ----Psi~V~DC~~AG~il~~f 153 (154)
T PF14538_consen 136 ----PSIYVFDCSNAGSILNAF 153 (154)
T ss_pred ----CEEEEEECCcHHHHHHhc
Confidence 789999999999998753
No 10
>PF12770 CHAT: CHAT domain
Probab=91.06 E-value=0.21 Score=45.68 Aligned_cols=68 Identities=22% Similarity=0.365 Sum_probs=47.4
Q ss_pred cCCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCC-------cccCC-----CCCCcCHHHHHH
Q 022254 132 KDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG-------VLGMP-----TSRYIYADELID 199 (300)
Q Consensus 132 iDY~g~~VT~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g-------~l~fp-----d~~~L~a~dL~~ 199 (300)
.-..+.+.|.++|++.|... .-=.|.|+|||... .|.+. +...+++.||..
T Consensus 122 ~~~~~~~at~~~l~~~l~~~-----------------~~~ilH~a~Hg~~~~~~~~~~~l~l~~~~~~~~~~l~~~~l~~ 184 (287)
T PF12770_consen 122 RVLVGPEATKDALLEALERR-----------------GPDILHFAGHGTFDPDPPDQSGLVLSDESGQEDGLLSAEELAQ 184 (287)
T ss_pred eEeeccCCCHHHHHhhhccC-----------------CCCEEEEEcccccCCCCCCCCEEEEeccCCCCCcccCHHHHHh
Confidence 34567778888888888311 11278999999976 67775 345699999988
Q ss_pred HHHHHHHcCCCceEEEEecccccc
Q 022254 200 VLKKKHASGNYKSLVFYLEACESG 223 (300)
Q Consensus 200 ~L~~m~~~~~Ykklvf~vEAC~SG 223 (300)
++- .+ --++++.||+|+
T Consensus 185 -l~l---~~---~~lVvLsaC~s~ 201 (287)
T PF12770_consen 185 -LDL---RG---PRLVVLSACESA 201 (287)
T ss_pred -hcC---CC---CCEEEecCcCCc
Confidence 321 11 336789999999
No 11
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=81.21 E-value=1.9 Score=43.15 Aligned_cols=60 Identities=25% Similarity=0.459 Sum_probs=38.1
Q ss_pred CCCeEEEEeecCCCCC-------cccCCCC---------CCcCHHHHHHHHHHHHHcCCCceEEEEeccccccccccccC
Q 022254 167 PNDHIFIFYSDHGGPG-------VLGMPTS---------RYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL 230 (300)
Q Consensus 167 ~~D~VFIY~tgHGg~g-------~l~fpd~---------~~L~a~dL~~~L~~m~~~~~Ykklvf~vEAC~SGSmfe~ll 230 (300)
+.|++++||+|||... ++.|-.. .-+....+.. .++. ..-++-+..+++|++|.+|....
T Consensus 132 ~~d~~~~~fsG~g~~~~~d~~~~lia~~t~p~~~a~~~~~~~s~~~~~~---~~~~-~~~~~ql~~~d~~~~~~~~~~~~ 207 (380)
T COG4249 132 PADTILFFFSGHGATPGADGRAYLIAFDTRPGAVAYDGEGGISPYSVAQ---ALHL-SEPGNQLVDLDACVRGDVFKATA 207 (380)
T ss_pred hhhhhhheeeccccccCCCCceeEEeecCChhhhcccCCCcccHHHHHH---HHHh-ccCCceeehhhhhcchhhhcccc
Confidence 3699999999999862 2222111 1133333333 3332 45567788999999999999754
No 12
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=72.94 E-value=3.3 Score=38.60 Aligned_cols=23 Identities=35% Similarity=0.746 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEe
Q 022254 79 DICHAYQLLRKGGLKDENIIVFM 101 (300)
Q Consensus 79 dv~~~Yq~Lk~~GipdenIIlm~ 101 (300)
-||.|-..||++|+||++|||..
T Consensus 204 TV~~Av~VL~EhgVp~s~IiL~s 226 (267)
T KOG1017|consen 204 TVCKAVEVLKEHGVPDSNIILVS 226 (267)
T ss_pred cHHHHHHHHHHcCCCcccEEEEE
Confidence 69999999999999999999973
No 13
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=67.76 E-value=11 Score=35.28 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=26.1
Q ss_pred CCeeEEEEeccCCCccchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022254 58 GTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 58 ~~~wAVLVagS~gw~NYRHqadv~~~Yq~Lk~~GipdenIIl 99 (300)
|+---+|++|-|+=-+| ...-.|-+.|++.|+|.++|.+
T Consensus 92 gKV~~LLlSGDN~~~sY---nEp~tM~kdL~~~GVp~~~i~l 130 (235)
T COG2949 92 GKVNYLLLSGDNATVSY---NEPRTMRKDLIAAGVPAKNIFL 130 (235)
T ss_pred CCeeEEEEecCCCcccc---cchHHHHHHHHHcCCCHHHeee
Confidence 34444555555443332 2466788899999999999987
No 14
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=57.87 E-value=10 Score=37.57 Aligned_cols=43 Identities=28% Similarity=0.494 Sum_probs=26.8
Q ss_pred CCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecccccccccc
Q 022254 168 NDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (300)
Q Consensus 168 ~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklvf~vEAC~SGSmfe 227 (300)
+.++|| |.||||=. .|+...++.+ + -+.-+.++=+|-||.+-.
T Consensus 308 ~~dlf~-Y~GHG~G~-------qy~~~~~i~~----~-----~~~~~~lL~GCsS~~l~~ 350 (383)
T PF03568_consen 308 SSDLFL-YCGHGSGE-------QYISGSTIQR----L-----DCCAVSLLMGCSSGRLKE 350 (383)
T ss_pred hCCeEE-EecCCcHH-------HhCCHhhhcc----c-----cccCceEEecCCcccccc
Confidence 455888 56999822 2455544432 2 234577788999988765
No 15
>PF11181 YflT: Heat induced stress protein YflT
Probab=54.73 E-value=18 Score=29.13 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHHhCCCCCCCEEEEecCc
Q 022254 75 RHQADICHAYQLLRKGGLKDENIIVFMYDD 104 (300)
Q Consensus 75 RHqadv~~~Yq~Lk~~GipdenIIlm~~DD 104 (300)
.=+..+.++-+-|++.|+..++|.++..|+
T Consensus 7 ~~~~E~~~~I~~L~~~Gy~~ddI~Vva~d~ 36 (103)
T PF11181_consen 7 DNEEEALSAIEELKAQGYSEDDIYVVAKDK 36 (103)
T ss_pred CCHHHHHHHHHHHHHcCCCcccEEEEEcCc
Confidence 346788999999999999999999997554
No 16
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=51.45 E-value=15 Score=34.66 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=28.4
Q ss_pred CCeeEEEEeccCCCccchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022254 58 GTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 58 ~~~wAVLVagS~gw~NYRHqadv~~~Yq~Lk~~GipdenIIl 99 (300)
++.=.+||+|-++=..| ..+-.|.+.|.+.|||++.|++
T Consensus 80 gk~~~ilvSGg~~~~~~---~Ea~~M~~yLi~~GVp~e~Ii~ 118 (239)
T PRK10834 80 GKVNYLLLSGDNALQSY---NEPMTMRKDLIAAGVDPSDIVL 118 (239)
T ss_pred CCCCEEEEeCCCCCCCC---CHHHHHHHHHHHcCCCHHHEEe
Confidence 33445888887642222 3556699999999999999987
No 17
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.75 E-value=1.6e+02 Score=26.76 Aligned_cols=44 Identities=32% Similarity=0.613 Sum_probs=32.6
Q ss_pred ccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceE
Q 022254 163 VDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSL 213 (300)
Q Consensus 163 l~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykkl 213 (300)
++|+|+ +.|.||-|.+.+..|. ++..+++..+|+... ++.|+++
T Consensus 113 vrstPt----fvFfdk~Gk~Il~lPG--Y~ppe~Fl~vlkYVa-~g~ykd~ 156 (182)
T COG2143 113 VRSTPT----FVFFDKTGKTILELPG--YMPPEQFLAVLKYVA-DGKYKDT 156 (182)
T ss_pred cccCce----EEEEcCCCCEEEecCC--CCCHHHHHHHHHHHH-HHHHhhh
Confidence 356776 4456788888999986 799999999998863 4566654
No 18
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=45.11 E-value=23 Score=29.56 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=20.8
Q ss_pred EEEeccCCCccchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022254 63 VLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 63 VLVagS~gw~NYRHqadv~~~Yq~Lk~~GipdenIIl 99 (300)
||++|..+... ....+-.+-++|.+.|+|+++|++
T Consensus 41 il~SGg~~~~~--~~~ea~~~~~~l~~~gvp~~~I~~ 75 (155)
T PF02698_consen 41 ILFSGGYGHGD--GRSEAEAMRDYLIELGVPEERIIL 75 (155)
T ss_dssp EEEE--SSTTH--TS-HHHHHHHHHHHT---GGGEEE
T ss_pred EEECCCCCCCC--CCCHHHHHHHHHHhcccchheeEc
Confidence 77777655544 344556667788888999999988
No 19
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=44.14 E-value=20 Score=29.77 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=27.4
Q ss_pred eeEEEEeccCCCccchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022254 60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 60 ~wAVLVagS~gw~NYRHqadv~~~Yq~Lk~~GipdenIIl 99 (300)
.--||++|..+....+ +.+-.+.+.|.+.|+|++.|++
T Consensus 35 ~~~ii~sGg~~~~~~~--~ea~~m~~~l~~~gv~~~~I~~ 72 (150)
T cd06259 35 APKLIVSGGQGPGEGY--SEAEAMARYLIELGVPAEAILL 72 (150)
T ss_pred CCEEEEcCCCCCCCCC--CHHHHHHHHHHHcCCCHHHeee
Confidence 4457777776655233 4555677999999999999887
No 20
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=43.78 E-value=55 Score=31.04 Aligned_cols=63 Identities=21% Similarity=0.110 Sum_probs=41.1
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCeeEEEEeccCCCccchhhhHHH--HHHHHHHhCCCCCCCEEEEecCcc
Q 022254 34 PSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADIC--HAYQLLRKGGLKDENIIVFMYDDI 105 (300)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wAVLVagS~gw~NYRHqadv~--~~Yq~Lk~~GipdenIIlm~~DDi 105 (300)
|.+++.||.|.-. .-..+..|.=|++=|+| |+-++.-+- ..-+---..|+|.+|++++-+.+.
T Consensus 47 pdDE~mFFsPtI~-------~L~~~~~~v~iLClSnG--N~dg~G~iR~kEL~ra~~~lgi~~s~v~~l~~~~f 111 (247)
T KOG3332|consen 47 PDDESMFFSPTIL-------YLTSGACNVHILCLSNG--NADGLGKIREKELHRACAVLGIPLSNVVVLDTPFF 111 (247)
T ss_pred cCccccchhhHHH-------HHhcCCccEEEEEecCC--CccccchHHHHHHHHHHHHHCCchhheEEecCCcC
Confidence 5556777764110 11235668888899999 888887653 222333448999999999966553
No 21
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=41.88 E-value=24 Score=34.19 Aligned_cols=101 Identities=29% Similarity=0.507 Sum_probs=61.2
Q ss_pred CCCeEeeCCCC--------CCccCCcCcCCCCCCCC----HHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCC
Q 022254 113 RPGVIINHPHG--------DDVYKGVPKDYTGEDVT----VENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180 (300)
Q Consensus 113 ~pG~i~n~~~g--------~nvY~gv~iDY~g~~VT----~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg 180 (300)
.||+|.+- || .++|+-..|+=.|..+. |+.+.+.|.-- .|+ | +-+|||=|
T Consensus 104 ~PGkVLHl-DGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--------------~PD--I-lViTGHD~ 165 (287)
T PF05582_consen 104 RPGKVLHL-DGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEY--------------RPD--I-LVITGHDG 165 (287)
T ss_pred CCCeEEEe-cCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHc--------------CCC--E-EEEeCchh
Confidence 79998873 33 24666444555555444 44455555411 222 3 34799966
Q ss_pred CCcccC----CC-CCCcCHHHHHHHHHHHHHc-CCCceEEEEeccccccccccccCCCCCc
Q 022254 181 PGVLGM----PT-SRYIYADELIDVLKKKHAS-GNYKSLVFYLEACESGSIFEGLLPEGLN 235 (300)
Q Consensus 181 ~g~l~f----pd-~~~L~a~dL~~~L~~m~~~-~~Ykklvf~vEAC~SGSmfe~llp~~~n 235 (300)
+++= .+ ..|=.+..+.++.+...+- ..+-+|||+.-|||| -||.|+..+-|
T Consensus 166 --~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGACQS--~fEall~AGAN 222 (287)
T PF05582_consen 166 --YLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGACQS--HFEALLEAGAN 222 (287)
T ss_pred --hhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcchhHH--HHHHHHHcCcc
Confidence 3332 22 2366788899998886442 345689999999996 56766655544
No 22
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=39.37 E-value=14 Score=35.97 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=22.8
Q ss_pred eEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecccccccc
Q 022254 170 HIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSI 225 (300)
Q Consensus 170 ~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklvf~vEAC~SGSm 225 (300)
..||.|.|||++... ..+.|+.+++. .+. +..|--+++.-||+.|.+
T Consensus 239 ~~~v~y~GHG~~~~w---~~~~~~~~d~~----~l~--N~~~~p~~~s~~C~~g~f 285 (378)
T PF01364_consen 239 AGFVNYFGHGSPTSW---ADEDFTSSDIS----NLN--NKNKLPVVISAACYTGNF 285 (378)
T ss_dssp -SEEEEES-B-SSBB---TTT--BTTTGG----G-----TT---EEEEESSSTT-T
T ss_pred CeEEEEecCCchhhc---ccCcccHhHHH----Hhc--CCCCceEEEEeECCCcCC
Confidence 468889999998755 11223333322 221 222556777899999998
No 23
>PF03415 Peptidase_C11: Clostripain family This family belongs to family C11 of the peptidase classification.; InterPro: IPR005077 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C11 (clostripain family, clan CD). ; PDB: 3UWS_A.
Probab=38.71 E-value=26 Score=35.03 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCC---------cccCCC---CCCcCHHHHHHHHHHH
Q 022254 137 EDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG---------VLGMPT---SRYIYADELIDVLKKK 204 (300)
Q Consensus 137 ~~VT~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g---------~l~fpd---~~~L~a~dL~~~L~~m 204 (300)
...+++.+..+|.= +.+.=|.++-.+-+.+||+-- -+++.+ +..|+-.||+++|+
T Consensus 76 nm~dp~tL~~fi~~-----------~~~~yPA~~y~LIlw~HG~Gw~~~~~~~~rg~~~D~~~~~~~l~i~el~~aL~-- 142 (397)
T PF03415_consen 76 NMGDPDTLSDFINW-----------AKENYPADRYGLILWDHGGGWLPASDSSTRGIGFDETSGGDYLSIPELAEALE-- 142 (397)
T ss_dssp -TTSHHHHHHHHHH-----------HHHHS-ECEEEEEEES-B-TT--TTGGG---EEEETTE---EE-HHHHHHHS---
T ss_pred CCCCHHHHHHHHHH-----------HHHhCCcccEEEEEEECCCCCCcCCCCCcceEecCCCChhhcccHHHHHHHHc--
Confidence 46677777777771 222246678888899999721 234433 34799999999999
Q ss_pred HHcCCCceEEEEecccccccc
Q 022254 205 HASGNYKSLVFYLEACESGSI 225 (300)
Q Consensus 205 ~~~~~Ykklvf~vEAC~SGSm 225 (300)
..-+==++..|||..|++
T Consensus 143 ---~~~~~d~I~FDaClM~~v 160 (397)
T PF03415_consen 143 ---GGPKFDFIGFDACLMGSV 160 (397)
T ss_dssp ----TT-EEEEEEESTT--BH
T ss_pred ---CCCCCcEEEECcccchhH
Confidence 122233667799999985
No 24
>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=38.06 E-value=2.3e+02 Score=29.04 Aligned_cols=119 Identities=18% Similarity=0.339 Sum_probs=68.2
Q ss_pred EEEEe-ecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEeccccccc-cccccCCCCCcEEEEeecCCCCcc
Q 022254 171 IFIFY-SDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGS-IFEGLLPEGLNIYATTASNAEESS 248 (300)
Q Consensus 171 VFIY~-tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklvf~vEAC~SGS-mfe~llp~~~nV~~iTASn~~EsS 248 (300)
.|||. ++.|.+|-..+ +-..++-..+++.|..++ ++=.||.|.|..+. ....++|....++++|| |+++.
T Consensus 168 aYif~k~~~~~~G~Vv~----Y~~~~~a~~~i~~~~~~g--~~GyiI~Dv~~~~~~p~~~~~~~~Wg~ivlss--P~~~~ 239 (439)
T PF07999_consen 168 AYIFHKTGGGEAGRVVF----YKDQEAAVSVINEMSSRG--VKGYIIYDVAKKGHQPSPELPPRGWGMIVLSS--PNESN 239 (439)
T ss_pred EEEEEeccCCcCceEEE----ecCchHHHHHHHHHHhhC--ceEEEEEecccccCccCCCcccCCCCEEEEcC--CChhh
Confidence 44443 33345554433 223456778888886543 35677889999883 33456788889999987 55555
Q ss_pred ccccCCCCCCCCCCCCccchhh-H--HHHHHHhhcccC----CCChhhHHHHHHHHHc
Q 022254 249 WGTYCPGEIPGPPPEYSTCLGD-L--YSIAWMEDSDIH----NLRTETLHQQYELVRS 299 (300)
Q Consensus 249 ys~yc~~~~~~~~~~~~TclgD-~--fS~~wme~~~~~----~l~~etl~~q~~~vk~ 299 (300)
|........ ..+-+-.|=-+ . =-++||+..+.. ....+.|++.++.||+
T Consensus 240 ~~~w~k~~~--~~~I~iNC~d~~e~KA~~aW~r~~~~~~~~~~~a~~~~e~~W~~Ve~ 295 (439)
T PF07999_consen 240 FEEWSKQRG--ALPIYINCYDEREVKAMCAWMRRSQLAEEQPEQAEVELENYWKEVEE 295 (439)
T ss_pred cccccccCC--ceeEEeeCCcHHHHHHHHHHHHhchhhcccchhhhhHHHHHHHHHHH
Confidence 655543211 11112222211 1 125599887652 2333668888888875
No 25
>PRK10494 hypothetical protein; Provisional
Probab=37.59 E-value=30 Score=32.56 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=29.5
Q ss_pred CeeEEEEeccCCCccchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022254 59 TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 59 ~~wAVLVagS~gw~NYRHqadv~~~Yq~Lk~~GipdenIIl 99 (300)
..--||++|..+..+- .+.+-.+-+.|++.|+|++.|++
T Consensus 120 ~~~~ii~SGg~~~~~~--~sEA~~~~~~l~~lGVp~~~Ii~ 158 (259)
T PRK10494 120 PGAKLIFTGGAAKTNT--VSTAEVGARVAQSLGVPREDIIT 158 (259)
T ss_pred CCCEEEEECCCCCCCC--CCHHHHHHHHHHHcCCCHHHeee
Confidence 3456888887765442 35666778899999999999976
No 26
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=35.43 E-value=21 Score=31.47 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=26.9
Q ss_pred CeeEEEEeccCCCccchhhhHHHHHHHHHHhCCCCCCCEEEE
Q 022254 59 TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVF 100 (300)
Q Consensus 59 ~~wAVLVagS~gw~NYRHqadv~~~Yq~Lk~~GipdenIIlm 100 (300)
..-.|.|||+.++-+ -.+.+.|++.|+|++||.+|
T Consensus 200 ~~~~~~icGp~~~~~-------~~~~~~l~~~G~~~~~i~~~ 234 (234)
T cd06183 200 EDTLVLVCGPPPMIE-------GAVKGLLKELGYKKDNVFKF 234 (234)
T ss_pred CCeEEEEECCHHHHH-------HHHHHHHHHcCCCHHHEEeC
Confidence 345688899977642 16778889999999999875
No 27
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=33.56 E-value=41 Score=32.24 Aligned_cols=42 Identities=36% Similarity=0.560 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHh-CCCCCCCEEEEecC-------ccccCCCCCCCCeEeeCC
Q 022254 77 QADICHAYQLLRK-GGLKDENIIVFMYD-------DIAFNEENPRPGVIINHP 121 (300)
Q Consensus 77 qadv~~~Yq~Lk~-~GipdenIIlm~~D-------DiA~n~~Np~pG~i~n~~ 121 (300)
.+|+-++|+.||+ .| ++|+|||+-.- |.|+ |+|..|.|-+.|
T Consensus 112 y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Las--r~~~~alVL~SP 161 (258)
T KOG1552|consen 112 YADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLAS--RYPLAAVVLHSP 161 (258)
T ss_pred hhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhh--cCCcceEEEecc
Confidence 3899999999965 78 99999998432 2232 556677777766
No 28
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=33.39 E-value=42 Score=25.65 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=16.4
Q ss_pred EEEEeccCCCccchhhhHHHH
Q 022254 62 AVLLAGSNGFWNYRHQADICH 82 (300)
Q Consensus 62 AVLVagS~gw~NYRHqadv~~ 82 (300)
-|||+||+.|.++..-.+++.
T Consensus 5 rVli~GgR~~~D~~~i~~~Ld 25 (71)
T PF10686_consen 5 RVLITGGRDWTDHELIWAALD 25 (71)
T ss_pred EEEEEECCccccHHHHHHHHH
Confidence 489999999998777555554
No 29
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=32.88 E-value=57 Score=31.64 Aligned_cols=101 Identities=23% Similarity=0.403 Sum_probs=63.1
Q ss_pred CCCeEeeCCCC--------CCccCCcCcCCCCCCC----CHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCC
Q 022254 113 RPGVIINHPHG--------DDVYKGVPKDYTGEDV----TVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180 (300)
Q Consensus 113 ~pG~i~n~~~g--------~nvY~gv~iDY~g~~V----T~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg 180 (300)
.||+|.+- || .++|+-..++-.|..+ -|+.+...|.- . .|+ | +-+|||=|
T Consensus 103 ~PGrVLHi-DGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~------------~--~PD--I-lViTGHD~ 164 (283)
T TIGR02855 103 MPGRVLHI-DGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEE------------V--RPD--I-LVITGHDA 164 (283)
T ss_pred CCCcEEee-cCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHH------------h--CCC--E-EEEeCchh
Confidence 49998873 33 2466644444445433 34555555551 1 222 3 34799965
Q ss_pred CCcccC----CC-CCCcCHHHHHHHHHHHHHcC-CCceEEEEeccccccccccccCCCCCc
Q 022254 181 PGVLGM----PT-SRYIYADELIDVLKKKHASG-NYKSLVFYLEACESGSIFEGLLPEGLN 235 (300)
Q Consensus 181 ~g~l~f----pd-~~~L~a~dL~~~L~~m~~~~-~Ykklvf~vEAC~SGSmfe~llp~~~n 235 (300)
+++= .| ..|-.+..+.++.+...+.. .+-++||+.-|||| -||.++..+-|
T Consensus 165 --~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGACQS--~yEall~AGAN 221 (283)
T TIGR02855 165 --YSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGACQS--HFESLIRAGAN 221 (283)
T ss_pred --hhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcchhHH--HHHHHHHcCcc
Confidence 4432 22 24778899999999875544 56699999999996 56766655545
No 30
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=29.03 E-value=41 Score=30.43 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEe
Q 022254 79 DICHAYQLLRKGGLKDENIIVFM 101 (300)
Q Consensus 79 dv~~~Yq~Lk~~GipdenIIlm~ 101 (300)
.+|.+.+.|+++|+++++|+++.
T Consensus 136 s~~~ai~~L~~~G~~~~~I~~v~ 158 (207)
T PF14681_consen 136 SAIAAIEILKEHGVPEENIIIVS 158 (207)
T ss_dssp HHHHHHHHHHHTTG-GGEEEEEE
T ss_pred hHHHHHHHHHHcCCCcceEEEEE
Confidence 68999999999999999999984
No 31
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=28.74 E-value=58 Score=30.14 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=39.1
Q ss_pred cCCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCC---------CCcccCCCCCCcCHHHHHHHHH
Q 022254 132 KDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG---------PGVLGMPTSRYIYADELIDVLK 202 (300)
Q Consensus 132 iDY~g~~VT~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg---------~g~l~fpd~~~L~a~dL~~~L~ 202 (300)
.|-+-...+=-.|.+-|..... +-=.||+||||- .|..-|=..+ +..++|.++++
T Consensus 54 lDvrMPg~sGlelq~~L~~~~~---------------~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP-~~~q~Lldav~ 117 (202)
T COG4566 54 LDVRMPGMSGLELQDRLAERGI---------------RLPVIFLTGHGDIPMAVQAMKAGAVDFLEKP-FSEQDLLDAVE 117 (202)
T ss_pred EecCCCCCchHHHHHHHHhcCC---------------CCCEEEEeCCCChHHHHHHHHcchhhHHhCC-CchHHHHHHHH
Confidence 3555555566677777764322 223588999998 3544444444 88899999998
Q ss_pred HHHHc
Q 022254 203 KKHAS 207 (300)
Q Consensus 203 ~m~~~ 207 (300)
...+.
T Consensus 118 ~Al~~ 122 (202)
T COG4566 118 RALAR 122 (202)
T ss_pred HHHHH
Confidence 87653
No 32
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=26.20 E-value=1.1e+02 Score=25.88 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=30.1
Q ss_pred CeeEEEEeccCCCccch------hhhHHHHHHHHHHhCCCCCCCEEE
Q 022254 59 TRWAVLLAGSNGFWNYR------HQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 59 ~~wAVLVagS~gw~NYR------Hqadv~~~Yq~Lk~~GipdenIIl 99 (300)
+.+-|+++++|....+. .+...-...+.|+++|+|=++|++
T Consensus 39 ~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~ 85 (126)
T TIGR01689 39 LGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYV 85 (126)
T ss_pred CCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEe
Confidence 45669999999877655 122233567889999999999887
No 33
>COG5155 ESP1 Separase, a protease involved in sister chromatid separation [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=26.06 E-value=39 Score=38.37 Aligned_cols=43 Identities=21% Similarity=0.508 Sum_probs=28.2
Q ss_pred CCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecccccccccc
Q 022254 168 NDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (300)
Q Consensus 168 ~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklvf~vEAC~SGSmfe 227 (300)
+.++|+|| ||||-. .++...|++..= + -.+.++=+|.|+.|..
T Consensus 1489 g~d~flYf-GHGgGe-------QY~~s~ei~~~~-------~--~a~~~L~GCSS~al~~ 1531 (1622)
T COG5155 1489 GCDVFLYF-GHGGGE-------QYLKSSEIKKCG-------E--GATMLLFGCSSVALLC 1531 (1622)
T ss_pred CCCEEEEE-ecCCcc-------eeeeHhhhhhhc-------c--cceeEEecCcHHHHHH
Confidence 45688887 899822 367777765432 2 2345577999998865
No 34
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=25.96 E-value=3.4e+02 Score=26.62 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCCceEEEEeccccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCccchhhHH
Q 022254 193 YADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLY 272 (300)
Q Consensus 193 ~a~dL~~~L~~m~~~~~Ykklvf~vEAC~SGSmfe~llp~~~nV~~iTASn~~EsSys~yc~~~~~~~~~~~~TclgD~f 272 (300)
+.+|..++++++|++. -+.+| +-+|.=|.+ .+.-.+++.++- .+..|-.-.|. -+.++|=-||+|
T Consensus 165 t~eda~~a~~~lhq~~-v~~vV--ITS~~~~~~------~g~~l~c~gs~~-~~~~f~~~ipk-----i~~~FtGTGDLf 229 (308)
T KOG2599|consen 165 TEEDAKRAVEKLHQKG-VKTVV--ITSFDLGEF------TGETLRCIGSSC-GSERFRYLIPK-----IDGVFTGTGDLF 229 (308)
T ss_pred cHHHHHHHHHHHHHhC-CCEEE--EEeeeeCCC------CCcEEEEEEecc-CCceEEEEecc-----cceEEecccHHH
Confidence 5678899999999866 44433 344433321 111255555544 44566655553 246888899999
Q ss_pred HH---HHHhh
Q 022254 273 SI---AWMED 279 (300)
Q Consensus 273 S~---~wme~ 279 (300)
|. +|...
T Consensus 230 saLLla~~~~ 239 (308)
T KOG2599|consen 230 SALLLAWLHE 239 (308)
T ss_pred HHHHHHHHhc
Confidence 94 55533
No 35
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=25.73 E-value=39 Score=31.14 Aligned_cols=23 Identities=48% Similarity=0.970 Sum_probs=18.5
Q ss_pred CccchhhhHHH-HHHHHHHhCCCC
Q 022254 71 FWNYRHQADIC-HAYQLLRKGGLK 93 (300)
Q Consensus 71 w~NYRHqadv~-~~Yq~Lk~~Gip 93 (300)
|.|.+|.+||+ .+|.+|++.++.
T Consensus 1 yHN~~Ha~dV~q~~~~ll~~~~~~ 24 (237)
T PF00233_consen 1 YHNFRHAADVLQFVYYLLSNGGLR 24 (237)
T ss_dssp SSSHHHHHHHHHHHHHHHHHGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHccCcc
Confidence 78999999998 567777877653
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=25.24 E-value=1.7e+02 Score=24.80 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=60.6
Q ss_pred CccccCCCCCeEEEEeecCCCCCc------------ccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecccccccccc
Q 022254 160 GKVVDSGPNDHIFIFYSDHGGPGV------------LGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (300)
Q Consensus 160 ~kvl~S~~~D~VFIY~tgHGg~g~------------l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklvf~vEAC~SGSmfe 227 (300)
.|+..- ++++++=++|+.++.. ..+..+..++.+.+.+.|.++..+.+.+ ..--....++-
T Consensus 32 ~Ki~~i--~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~p~~~~~lv~ 104 (182)
T cd01906 32 EKIFKI--DDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQS-----LRPLGVSLLVA 104 (182)
T ss_pred ceEEEE--CCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----ccChheEEEEE
Confidence 355543 3679999999998641 1222355799999999998865555442 11111112222
Q ss_pred ccCC-CCCcEEEEeecCCCCccccccCCCCCCCCCCCCccchhhHHHHHHHhhcccCCCChhh
Q 022254 228 GLLP-EGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTET 289 (300)
Q Consensus 228 ~llp-~~~nV~~iTASn~~EsSys~yc~~~~~~~~~~~~TclgD~fS~~wme~~~~~~l~~et 289 (300)
++.. ..+.+|.+..+..-.....+ ..| -|..+-..+||..-..+++.+.
T Consensus 105 G~d~~~~~~Ly~id~~G~~~~~~~~-----------a~G--~g~~~~~~~L~~~~~~~~s~~e 154 (182)
T cd01906 105 GVDEEGGPQLYSVDPSGSYIEYKAT-----------AIG--SGSQYALGILEKLYKPDMTLEE 154 (182)
T ss_pred EEeCCCCcEEEEECCCCCEeeccEE-----------EEC--CCcHHHHHHHHHHccCCCCHHH
Confidence 2221 23456666555444333111 122 2446778888888777764443
No 37
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=23.84 E-value=1.9e+02 Score=28.24 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=42.9
Q ss_pred CCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecc
Q 022254 165 SGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEA 219 (300)
Q Consensus 165 S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklvf~vEA 219 (300)
..-+++|..|+++-...+++++|-..+|..+|....++.++....-+.+.++++|
T Consensus 45 ~kr~srvI~~Ihrqe~~~~~giPi~~~I~i~dse~v~raI~~~~~~~~IdLii~T 99 (285)
T PF01972_consen 45 EKRGSRVITLIHRQERVSFLGIPIYRYIDIDDSEFVLRAIREAPKDKPIDLIIHT 99 (285)
T ss_pred HHhCCEEEEEEEeccccceeccccceeEcHhhHHHHHHHHHhcCCCCceEEEEEC
Confidence 3446889999998877889999988788877777777777666666777777775
No 38
>PRK10649 hypothetical protein; Provisional
Probab=23.83 E-value=43 Score=35.13 Aligned_cols=17 Identities=24% Similarity=0.661 Sum_probs=13.8
Q ss_pred CCCCCeEEEEeecCCCC
Q 022254 165 SGPNDHIFIFYSDHGGP 181 (300)
Q Consensus 165 S~~~D~VFIY~tgHGg~ 181 (300)
...++.++||+||||..
T Consensus 449 ~~~~nt~iiy~SDHGe~ 465 (577)
T PRK10649 449 ATDPNGFLVYFSDHGEE 465 (577)
T ss_pred cCCCCeEEEEECCCCcc
Confidence 33478999999999975
No 39
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=23.77 E-value=75 Score=32.31 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=22.1
Q ss_pred CCCC-CCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEe
Q 022254 134 YTGE-DVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFY 175 (300)
Q Consensus 134 Y~g~-~VT~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~ 175 (300)
|+|+ +||++++|+--+.+.. ++-++..-.|||+
T Consensus 82 YsGD~n~t~~~IL~k~k~~F~---------idlDs~nI~Fi~L 115 (465)
T KOG1387|consen 82 YSGDFNVTPENILNKVKNKFD---------IDLDSDNIFFIYL 115 (465)
T ss_pred EeCCCCCCHHHHHHHHHHhcC---------ceecccceEEEEE
Confidence 6676 8999999987775432 3334445567775
No 40
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=22.97 E-value=1.2e+02 Score=25.37 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=34.4
Q ss_pred eeEEEEeccC------CCccchhhhHHHHHHHHHHhCCCCCCCEEEE
Q 022254 60 RWAVLLAGSN------GFWNYRHQADICHAYQLLRKGGLKDENIIVF 100 (300)
Q Consensus 60 ~wAVLVagS~------gw~NYRHqadv~~~Yq~Lk~~GipdenIIlm 100 (300)
-..|+|+|=. ...||+-..-+-.+-++|.+.|+++|+|-+.
T Consensus 53 ADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~ 99 (124)
T PF02662_consen 53 ADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLY 99 (124)
T ss_pred CCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEE
Confidence 5678887732 3788888888899999999999999999985
No 41
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=22.95 E-value=1.1e+02 Score=27.51 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.7
Q ss_pred CcCHHHHHHHHHHHHHcCCCceEEEEeccccc
Q 022254 191 YIYADELIDVLKKKHASGNYKSLVFYLEACES 222 (300)
Q Consensus 191 ~L~a~dL~~~L~~m~~~~~Ykklvf~vEAC~S 222 (300)
.++|.-|.++|++.+++. -...++.+|||-+
T Consensus 67 PVHA~NL~e~l~~I~~~~-~~~~IIAIDAcLG 97 (163)
T PF06866_consen 67 PVHALNLEETLNEIKKKH-PNPFIIAIDACLG 97 (163)
T ss_pred CcchhhHHHHHHHHHHHC-CCCeEEEEECCCC
Confidence 599999999999986532 2567888999955
No 42
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=22.83 E-value=54 Score=29.12 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=25.4
Q ss_pred eEEEEeccCCCccchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022254 61 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 61 wAVLVagS~gw~NYRHqadv~~~Yq~Lk~~GipdenIIl 99 (300)
.-|.|+|+.++ +-.+.+.|++.|++.+||..
T Consensus 198 ~~v~~CGp~~~--------~~~v~~~l~~~G~~~~~i~~ 228 (232)
T cd06212 198 CDVYLCGPPPM--------IDAALPVLEMSGVPPDQIFY 228 (232)
T ss_pred CEEEEECCHHH--------HHHHHHHHHHcCCCHHHeee
Confidence 45888998866 45778899999999999975
No 43
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=22.51 E-value=95 Score=28.88 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHhC----CCCCCCEEEE
Q 022254 77 QADICHAYQLLRKG----GLKDENIIVF 100 (300)
Q Consensus 77 qadv~~~Yq~Lk~~----GipdenIIlm 100 (300)
-.|+..+|+.|+++ |++.++|+++
T Consensus 130 ~~d~~~a~~~l~~~~~~~g~dp~~i~v~ 157 (312)
T COG0657 130 LEDAYAAYRWLRANAAELGIDPSRIAVA 157 (312)
T ss_pred HHHHHHHHHHHHhhhHhhCCCccceEEE
Confidence 36889999999876 7999999998
No 44
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=22.43 E-value=80 Score=29.18 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=31.7
Q ss_pred eeEEEEeccCCCccchhhhHHHHHHHHHHhCCCCCCCEEEEecCcccc
Q 022254 60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAF 107 (300)
Q Consensus 60 ~wAVLVagS~gw~NYRHqadv~~~Yq~Lk~~GipdenIIlm~~DDiA~ 107 (300)
..-|+++|+.++- -.+-+.|++.|+++++|.+..-.-+.|
T Consensus 190 ~~~v~lCGp~~mv--------~~~~~~L~~~Gv~~~~i~~~~~~~m~c 229 (261)
T TIGR02911 190 EVQAIVVGPPIMM--------KFTVQELLKKGIKEENIWVSYERKMCC 229 (261)
T ss_pred ceEEEEECCHHHH--------HHHHHHHHHcCCCHHHEEEEeccceec
Confidence 3468888887653 346778999999999999998777766
No 45
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=22.23 E-value=45 Score=35.11 Aligned_cols=15 Identities=33% Similarity=0.789 Sum_probs=12.5
Q ss_pred CCCCeEEEEeecCCC
Q 022254 166 GPNDHIFIFYSDHGG 180 (300)
Q Consensus 166 ~~~D~VFIY~tgHGg 180 (300)
.+.+..+||+||||-
T Consensus 442 ~~~~~~liY~SDHGE 456 (555)
T COG2194 442 KKDNTSLIYFSDHGE 456 (555)
T ss_pred CCCCeEEEEEcCccH
Confidence 334889999999997
No 46
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=22.15 E-value=84 Score=26.68 Aligned_cols=35 Identities=29% Similarity=0.605 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC
Q 022254 136 GEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP 181 (300)
Q Consensus 136 g~~VT~enfl~VL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~ 181 (300)
.+++|+..|+.+++ |.++-.|++-+|++..+|--+
T Consensus 52 P~dltvgqfi~iIR-----------kRiqL~~~kA~flfVn~~~p~ 86 (116)
T KOG1654|consen 52 PDDLTVGQFIKIIR-----------KRIQLSPEKAFFLFVNNTSPP 86 (116)
T ss_pred cccccHHHHHHHHH-----------HHhccChhHeEEEEEcCcCCc
Confidence 46799999999999 336678899999999998643
No 47
>PLN02541 uracil phosphoribosyltransferase
Probab=21.79 E-value=99 Score=29.17 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEe
Q 022254 79 DICHAYQLLRKGGLKDENIIVFM 101 (300)
Q Consensus 79 dv~~~Yq~Lk~~GipdenIIlm~ 101 (300)
.++.+.+.|++.|.+.++|+++.
T Consensus 172 S~~~ai~~L~~~Gv~~~~I~~v~ 194 (244)
T PLN02541 172 TIVAAIDELVSRGASVEQIRVVC 194 (244)
T ss_pred HHHHHHHHHHHcCCCcccEEEEE
Confidence 58999999999999999999884
No 48
>TIGR02841 spore_YyaC putative sporulation protein YyaC. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, also called YyaC, is a member of that panel and is otherwise uncharacterized. The second round of PSI-BLAST shows many similarities to the germination protease GPR, which is found in exactly the same set of organisms and has a known role in the sporulation/germination process.
Probab=21.10 E-value=99 Score=27.10 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=24.6
Q ss_pred CcCHHHHHHHHHHHHHcCCCceEEEEeccccc
Q 022254 191 YIYADELIDVLKKKHASGNYKSLVFYLEACES 222 (300)
Q Consensus 191 ~L~a~dL~~~L~~m~~~~~Ykklvf~vEAC~S 222 (300)
.++|..|.++|++.+++.. +..++.+|||-+
T Consensus 43 PVHA~NL~e~l~~I~~~~~-~~~iIAIDAcLG 73 (140)
T TIGR02841 43 PVHAKNLEEKLKIIKKKHP-NPFIIAIDACLG 73 (140)
T ss_pred CcccccHHHHHHHHHHhCC-CCeEEEEECccC
Confidence 4999999999999865433 467888999955
No 49
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=20.66 E-value=1.8e+02 Score=24.82 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=27.1
Q ss_pred eeEEEEecc-CCCccchhhhHHHHHHHHHHhCCCCCCCEEE
Q 022254 60 RWAVLLAGS-NGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (300)
Q Consensus 60 ~wAVLVagS-~gw~NYRHqadv~~~Yq~Lk~~GipdenIIl 99 (300)
.-||=|+++ +|-.- .|...+||.|++.||+.+.|..
T Consensus 35 dpavQIs~~~~g~~~----~~~~~v~~~L~~~gI~~ksi~~ 71 (127)
T PRK10629 35 ESTLAIRAVHQGASL----PDGFYVYQHLDANGIHIKSITP 71 (127)
T ss_pred CceEEEecCCCCCcc----chHHHHHHHHHHCCCCcceEEe
Confidence 346777776 55322 7899999999999999887654
No 50
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=20.01 E-value=1.5e+02 Score=24.82 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=30.6
Q ss_pred CcCHHHHHHHHHHHHHcCCCceEEEEeccccccccccc
Q 022254 191 YIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEG 228 (300)
Q Consensus 191 ~L~a~dL~~~L~~m~~~~~Ykklvf~vEAC~SGSmfe~ 228 (300)
.-.+.+|++.|.+...++.|.++|++.+.=.-|-|-+.
T Consensus 72 ~~Fa~~vA~~L~~~~~~~~~~~LvlvA~p~~LG~LR~~ 109 (138)
T PF10116_consen 72 ERFAREVADRLEKARRAGKFDRLVLVAPPRFLGLLREH 109 (138)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 35678999999999999999999999887555555443
Done!