BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022256
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
+VP ++GS+T GS+ P A CGV ++PT+G V R G+++ + SLD++GP R+ D I
Sbjct: 166 LVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAI 225
Query: 61 VLDAIQGKDPDDLSSR---DFPFADPFSVDITKLTV 93
VL+AI G D +D +S D F DI L V
Sbjct: 226 VLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKV 261
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 8 SETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQG 67
S+T GS+ P A CGV L+PT+G V R G+++ + SLD++GP RS D +++DA G
Sbjct: 160 SDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAG 219
Query: 68 KDPDDLSSRDFP--FADPFSVDITKLTVGYLEDA 99
DP D +S D P F + + L +G + +A
Sbjct: 220 PDPLDATSLDLPPRFQEALEGPLPPLRLGVVREA 253
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 119/279 (42%), Gaps = 56/279 (20%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
MV A+GS+T GS+ P + CGV +PT+G V R G+++ + SLD++GP ++ D I
Sbjct: 153 MVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAI 212
Query: 61 VLDAIQGKDPDDLSSRD---------------FPFADPFSVDITKLTVGYLEDAEMEVVQ 105
+++ I G+D +D ++ + FA P + + G E E E ++
Sbjct: 213 LMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFE-EALK 271
Query: 106 VLAEKGIKMVPFK---LNYTVDSVQGILNFTMDVDMLAHFD------EWQRSGKDDVYEA 156
+L G K+ K + Y+V + I + LA FD + G ++Y
Sbjct: 272 LLERLGAKVERVKIPHIKYSVATYYVIAPAEASSN-LARFDGVKYGLRIKEKGLREMYMK 330
Query: 157 QDQ--WPVELRRSRIITAVD---------YMQAQRARGKLIREVKESFI----------- 194
+ E+RR +I + +A + R K+ E+ E
Sbjct: 331 TRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSP 390
Query: 195 VDAF-IGNVTDWEKVCL-------GNLVGLPVIVVPAGF 225
V AF IG + D L NL GLP I VP GF
Sbjct: 391 VTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF 429
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 3 PFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVL 62
P ++GS+T GS+ P + CGV ++PT+G V R G+++ + SLD++G F R D +VL
Sbjct: 161 PVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVL 220
Query: 63 DAIQGKDPDDLSSRDFPFADPFSVDITKLTVG 94
+ I G D D +S P + +S ++ K G
Sbjct: 221 EVISGWDEKDSTSAKVPVPE-WSEEVKKEVKG 251
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 6 IGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAI 65
+GS+T GS+ P + CGV +PT+G V R G+++ + SLD++GP ++ D I+ + I
Sbjct: 159 LGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEII 218
Query: 66 QGKDPDDLSS 75
G+D +D ++
Sbjct: 219 SGRDENDATT 228
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 45/79 (56%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
+ AIG+ET GS+ P A GV L+PT G V R G++ IS S D GP RS AD
Sbjct: 177 LASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAA 236
Query: 61 VLDAIQGKDPDDLSSRDFP 79
VL AI G+D D ++ P
Sbjct: 237 VLTAIAGRDDADPATATMP 255
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%)
Query: 2 VPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIV 61
V FAIG + GS+ P A CGV +PTFG V TG I ++D LGP R+ D ++
Sbjct: 184 VDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALM 243
Query: 62 LDAIQGKDPDDLSSRD 77
L I G+D +D D
Sbjct: 244 LSVIAGRDGNDPRQAD 259
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 2 VPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIV 61
V FAIG + G++ P A CGV +PTFG V TG I ++D LGP R+ D ++
Sbjct: 184 VDFAIGGDQGGAIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALM 243
Query: 62 LDAIQGKDPDDLSSRD 77
L I G+D +D D
Sbjct: 244 LSVIAGRDGNDPRQAD 259
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
M+P A+G++T GS+ P A CG A++P+F + GV S +LD +G F A D
Sbjct: 143 MIPLALGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 61 VLDAIQGKD 69
L A+ G+
Sbjct: 203 GLLAMTGRS 211
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
M+P A+G++T GS+ P A CG A++P+F + GV S +LD +G F A D
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 61 VLDAIQGKD 69
L A+ G+
Sbjct: 203 GLLAMTGRS 211
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
M+P A+G++T GS+ P A CG A++P+F + GV S +LD +G F A D
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 61 VLDAIQGKD 69
L A+ G+
Sbjct: 203 GLLAMTGRS 211
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
M+P A+G++T GS+ P A CG A++P+F + GV S +LD +G F A D
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 61 VLDAIQGKD 69
L A+ G+
Sbjct: 203 GLLAMTGRS 211
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
M+P A+G++T GS+ P A CG A++P+F + GV S +LD +G F A D
Sbjct: 143 MIPLALGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 61 VLDAIQGKD 69
L A+ G+
Sbjct: 203 GLLAMTGRS 211
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
M+P A+G++T GS+ P A CG A++P+F + GV S +LD +G F A D
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 61 VLDAIQGKD 69
L A+ G+
Sbjct: 203 GLLAMTGRS 211
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
M+P A+G++T GS+ P A CG A++P+F + GV S +LD +G F A D
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 61 VLDAIQGKD 69
L A+ G+
Sbjct: 203 GLLAMTGRS 211
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
M+P A+G++T G + P A CG A++P+F + GV S +LD +G F A D
Sbjct: 143 MIPLALGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 61 VLDAIQGKD 69
L A+ G+
Sbjct: 203 GLLAMTGRS 211
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 3 PFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKL---GPFCRSAADCT 59
P A G++ AGS+ P + CGV L+PT G + +++ S+++ G F RS D
Sbjct: 164 PVAHGNDAAGSVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIA 223
Query: 60 IVLDAIQGKDPDDL---SSRDFPFADPFSVDITKLTVGYL 96
+LD + G P D + P+A S + L VG L
Sbjct: 224 ALLDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVL 263
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 3 PFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKL---GPFCRSAADCT 59
P A G++ AG++ P + CGV L+PT G + +++ S+++ G F RS D
Sbjct: 164 PVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIA 223
Query: 60 IVLDAIQGKDPDDL---SSRDFPFADPFSVDITKLTVGYL 96
+LD + G P D + P+A S + L VG L
Sbjct: 224 ALLDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVL 263
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 5 AIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDA 64
++G++T GS+ P GV +P++G V G + +S S D GP RS D + +
Sbjct: 163 SLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEI 222
Query: 65 IQGKD 69
+ G+
Sbjct: 223 LAGES 227
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 4 FAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLD 63
F++G++TAGS P A + ++PT G + +GV+ SLD + F S A+ T++
Sbjct: 192 FSLGTDTAGSGRVPAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFAASVAEGTLIRR 251
Query: 64 AIQGKDPDDLSSR 76
+G D D SR
Sbjct: 252 IAEGYDAADPYSR 264
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 24/134 (17%)
Query: 8 SETAGSMTYPGARCGVTALRPTFGTVGRTG----VMSISESLDKLGPFCRSAADCTIVLD 63
++ GS+ +P A CG+ L+PT + ++G V + LGP R D +
Sbjct: 207 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMAR---DVESLAL 263
Query: 64 AIQGKDPDDLSSRD-----FPFADPFSVDITKLTVGYLED------------AEMEVVQV 106
++ + L + D PF + L VGY E A +E Q
Sbjct: 264 CLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQR 323
Query: 107 LAEKGIKMVPFKLN 120
L G ++PF N
Sbjct: 324 LEAAGHTLIPFLPN 337
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 24/134 (17%)
Query: 8 SETAGSMTYPGARCGVTALRPTFGTVGRTG----VMSISESLDKLGPFCRSAADCTIVLD 63
++ GS+ +P A CG+ L+PT + ++G V + LGP R D +
Sbjct: 206 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMAR---DVESLAL 262
Query: 64 AIQGKDPDDLSSRD-----FPFADPFSVDITKLTVGYLED------------AEMEVVQV 106
++ + L + D PF + L VGY E A +E Q
Sbjct: 263 CLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQR 322
Query: 107 LAEKGIKMVPFKLN 120
L G ++PF N
Sbjct: 323 LEAAGHTLIPFLPN 336
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 24/134 (17%)
Query: 8 SETAGSMTYPGARCGVTALRPTFGTVGRTG----VMSISESLDKLGPFCRSAADCTIVLD 63
++ GS+ +P A CG+ L+PT + ++G V + LGP R D +
Sbjct: 226 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMAR---DVESLAL 282
Query: 64 AIQGKDPDDLSSRD-----FPFADPFSVDITKLTVGYLED------------AEMEVVQV 106
++ + L + D PF + L VGY E A +E Q
Sbjct: 283 CLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQR 342
Query: 107 LAEKGIKMVPFKLN 120
L G ++PF N
Sbjct: 343 LEAAGHTLIPFLPN 356
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 24/134 (17%)
Query: 8 SETAGSMTYPGARCGVTALRPTFGTVGRTG----VMSISESLDKLGPFCRSAADCTIVLD 63
++ GS+ +P A CG+ L+PT + ++G V + LGP R D +
Sbjct: 230 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMAR---DVESLAL 286
Query: 64 AIQGKDPDDLSSRD-----FPFADPFSVDITKLTVGYLED------------AEMEVVQV 106
++ + L + D PF + L VGY E A +E Q
Sbjct: 287 CLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQR 346
Query: 107 LAEKGIKMVPFKLN 120
L G ++PF N
Sbjct: 347 LEAAGHTLIPFLPN 360
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 24/134 (17%)
Query: 8 SETAGSMTYPGARCGVTALRPTFGTVGRTG----VMSISESLDKLGPFCRSAADCTIVLD 63
++ GS+ +P A CG+ L+PT + ++G V + LGP R D +
Sbjct: 200 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMAR---DVESLAL 256
Query: 64 AIQGKDPDDLSSRD-----FPFADPFSVDITKLTVGYLED------------AEMEVVQV 106
++ + L + D PF + L VGY E A +E Q
Sbjct: 257 CLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQR 316
Query: 107 LAEKGIKMVPFKLN 120
L G ++PF N
Sbjct: 317 LEAAGHTLIPFLPN 330
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 24/134 (17%)
Query: 8 SETAGSMTYPGARCGVTALRPTFGTVGRTG----VMSISESLDKLGPFCRSAADCTIVLD 63
++ GS+ +P A CG+ L+PT + ++G V + LGP R D +
Sbjct: 244 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMAR---DVESLAL 300
Query: 64 AIQGKDPDDLSSRD-----FPFADPFSVDITKLTVGYLED------------AEMEVVQV 106
++ + L + D PF + L VGY E A +E Q
Sbjct: 301 CLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQR 360
Query: 107 LAEKGIKMVPFKLN 120
L G ++PF N
Sbjct: 361 LEAAGHTLIPFLPN 374
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 24/134 (17%)
Query: 8 SETAGSMTYPGARCGVTALRPTFGTVGRTG----VMSISESLDKLGPFCRSAADCTIVLD 63
++ GS+ +P A CG+ L+PT + ++G V + LGP R D +
Sbjct: 244 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMAR---DVESLAL 300
Query: 64 AIQGKDPDDLSSRD-----FPFADPFSVDITKLTVGYLED------------AEMEVVQV 106
++ + L + D PF + L VGY E A +E Q
Sbjct: 301 CLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQR 360
Query: 107 LAEKGIKMVPFKLN 120
L G ++PF N
Sbjct: 361 LEAAGHTLIPFLPN 374
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 50 PFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYL 96
P+ D +VLD Q D DD + DF ++DP D+ + +L
Sbjct: 286 PYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHL 332
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 50 PFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYL 96
P+ D +VLD Q D DD + DF ++DP D+ + +L
Sbjct: 287 PYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHL 333
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 50 PFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDI 88
P+ D +VLD Q D DD + DF ++DP D+
Sbjct: 287 PYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDL 325
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 50 PFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDI 88
P+ D +VLD Q D DD + DF ++DP D+
Sbjct: 287 PYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDL 325
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 102 EVVQVLAEKGIKMVPFKL----NYTV---DSVQGILNFTMDVDMLAH-FDEWQRSGKDDV 153
E ++L+ +GI +VP L TV + VQ + +F D+D + + ++ + +DV
Sbjct: 322 EADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKKAFNDV 381
Query: 154 YEAQDQWPVELRRSRIITAVDYMQ-AQRARG 183
+ ++++ V++R + I A+D + A + RG
Sbjct: 382 MKVKEKYNVDMRTAAYILAIDRVAYATKKRG 412
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 102 EVVQVLAEKGIKMVPFKL----NYTV---DSVQGILNFTMDVDMLAH-FDEWQRSGKDDV 153
E ++L+ +GI +VP L TV + VQ + +F D+D + + ++ + +DV
Sbjct: 322 EADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDV 381
Query: 154 YEAQDQWPVELRRSRIITAVDYMQ-AQRARG 183
+ ++++ V++R + I A+D + A + RG
Sbjct: 382 MKVKEKYNVDMRTAAYILAIDRVAYATKKRG 412
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 102 EVVQVLAEKGIKMVPFKL----NYTV---DSVQGILNFTMDVDMLAH-FDEWQRSGKDDV 153
E ++L+ +GI +VP L TV + VQ + +F D+D + + ++ + +DV
Sbjct: 323 EADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDV 382
Query: 154 YEAQDQWPVELRRSRIITAVDYMQ-AQRARG 183
+ ++++ V++R + I A+D + A + RG
Sbjct: 383 MKVKEKYNVDMRTAAYILAIDRVAYATKKRG 413
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,962,537
Number of Sequences: 62578
Number of extensions: 290790
Number of successful extensions: 562
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 41
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)