Query 022256
Match_columns 300
No_of_seqs 157 out of 1462
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 16:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 4.3E-53 1.5E-57 391.3 20.8 265 1-279 153-471 (471)
2 3a2q_A 6-aminohexanoate-cyclic 100.0 2.8E-53 9.5E-58 396.1 18.9 273 1-287 162-492 (493)
3 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 1.6E-52 5.5E-57 390.0 22.4 264 1-276 166-485 (485)
4 3a1k_A Amidase; AS family enzy 100.0 1.8E-52 6.1E-57 391.6 21.3 256 1-271 183-506 (521)
5 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 3.7E-52 1.3E-56 387.0 22.7 258 1-272 154-466 (476)
6 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 4.8E-52 1.6E-56 385.3 20.6 262 1-274 159-476 (478)
7 1m22_A Peptide amidase, PAM; e 100.0 5.1E-52 1.8E-56 388.2 20.6 258 1-270 177-487 (503)
8 1o9p_A Malonamidase E2; malona 100.0 1.2E-51 4.1E-56 376.5 20.0 243 1-268 143-411 (414)
9 2dc0_A Probable amidase; struc 100.0 1.8E-51 6.2E-56 377.7 19.3 239 1-268 159-434 (434)
10 3ppm_A Fatty-acid amide hydrol 100.0 1.4E-50 4.8E-55 380.5 18.2 272 1-272 223-571 (573)
11 4amg_A Snogd; transferase, pol 37.5 96 0.0033 26.5 7.6 33 88-120 20-59 (400)
12 3s5p_A Ribose 5-phosphate isom 34.7 58 0.002 24.9 4.7 31 88-118 19-54 (166)
13 3ph3_A Ribose-5-phosphate isom 28.5 68 0.0023 24.6 4.2 30 89-118 19-53 (169)
14 2vvr_A Ribose-5-phosphate isom 23.3 1E+02 0.0035 23.1 4.3 28 91-118 2-34 (149)
15 3he8_A Ribose-5-phosphate isom 23.0 1E+02 0.0035 23.1 4.2 28 91-118 1-33 (149)
16 2vvp_A Ribose-5-phosphate isom 21.9 1.1E+02 0.0037 23.3 4.2 28 91-118 4-36 (162)
17 4em8_A Ribose 5-phosphate isom 21.5 1.2E+02 0.0039 22.8 4.2 28 91-118 8-40 (148)
No 1
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=4.3e-53 Score=391.30 Aligned_cols=265 Identities=28% Similarity=0.444 Sum_probs=200.9
Q ss_pred CcceeeeccCCCcccccccccCceeecCCCCCCCCCCCCcCCCCCcccCcCCCCHHHHHHHHHHHcCCCCCCCCCCCCC-
Q 022256 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFP- 79 (300)
Q Consensus 1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~~~~~~~~d~~Gpmarsv~Dl~~~~~vl~g~~~~d~~~~~~~- 79 (300)
++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|.|.|+.|+.+.+.+
T Consensus 153 ~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~ 232 (471)
T 3kfu_E 153 LAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPP 232 (471)
T ss_dssp SCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCCC
T ss_pred CCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999988766544
Q ss_pred -CCCCCCCCCCccEEEEecc-----------hHHHHHHHHHHCCCEEEEecCCcchhhHHHHHhhhhchhhhhhhHHHHh
Q 022256 80 -FADPFSVDITKLTVGYLED-----------AEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQR 147 (300)
Q Consensus 80 -~~~~~~~~~~~lrIg~~~~-----------~~~~a~~~L~~~G~~vvev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (300)
+......+++++||||+.+ +++++++.|+++|++|+++++|.. +.....+...+..|....+..+..
T Consensus 233 ~~~~~~~~~~~~lrIgv~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~v~~p~~-~~~~~~~~~~~~~e~~~~~~~~~~ 311 (471)
T 3kfu_E 233 RFQEALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRELGLSVREVSWPSL-PQALAAYYILAPAEASSNLARYDG 311 (471)
T ss_dssp CTTCCSCCCCSSCEEEEEGGGTTTCCHHHHHHHHHHHHHHHTTTCEEEEECCTTG-GGHHHHHHHHHHHHHHHHGGGCST
T ss_pred chhhhhccCCCCCEEEEECCccCCCCHHHHHHHHHHHHHHHHcCCeeeeecCccH-HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1112223578999999864 346789999999999999998853 332222323333333222211100
Q ss_pred ---c------CCCch-------hhhhhccHHHHHhhhc-----cCHHHHHHHHHHHHHHHHHHHHHcc-CcEEEecCCCC
Q 022256 148 ---S------GKDDV-------YEAQDQWPVELRRSRI-----ITAVDYMQAQRARGKLIREVKESFI-VDAFIGNVTDW 205 (300)
Q Consensus 148 ---~------~~~~~-------~~~~~~~~~~l~~~~~-----~s~~~~~~a~~~r~~~~~~~~~~~~-~D~li~P~~~~ 205 (300)
. ...+. +.+. ...++..+.. .+..+|.++++.|.++++++.++|+ +|+||+|+...
T Consensus 312 ~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~ 389 (471)
T 3kfu_E 312 TLYGRRAAGEEVEGMMEATRALFGLE--VKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPH 389 (471)
T ss_dssp TTTSCCCCCSSSHHHHHHHHTTSCHH--HHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSS
T ss_pred hccccccchhhHHHHHHhhhhhcCHH--HHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCC
Confidence 0 00000 1111 1122333322 2334899999999999999999997 99999997521
Q ss_pred ------------------ccccccccCCCCEEEecccccCCCCCCCCCCCCCcceeEEEecCCCChHHHHHHHHHHHhhc
Q 022256 206 ------------------EKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSVT 267 (300)
Q Consensus 206 ------------------~~t~~~nl~g~PaisvP~g~~~~~~~p~~~~~~~~pvglqlig~~~~D~~lL~~a~~lE~~~ 267 (300)
.||.+||++|+|++|||+|+ .+ |+|+||||+|++++|+.||++|+++|++.
T Consensus 390 ~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~----------GlPvGlQlvg~~~~D~~LL~~A~~lE~~~ 458 (471)
T 3kfu_E 390 PAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EG----------HLPVGLQLLAPWGEDERLLRAALAFEEAT 458 (471)
T ss_dssp SCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ET----------TEEEEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred CCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CC----------CCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 26778999999999999998 54 35799999999999999999999999999
Q ss_pred -CCCCCCCCCCCC
Q 022256 268 -DHHKQRPPIDNL 279 (300)
Q Consensus 268 -~~~~~~p~~~~~ 279 (300)
+|+++.|+-++|
T Consensus 459 g~w~~~~p~~~~~ 471 (471)
T 3kfu_E 459 ARAHLKAPLGEAL 471 (471)
T ss_dssp SCCCCCTTCCC--
T ss_pred cCcccCCCccccC
Confidence 999888876553
No 2
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=2.8e-53 Score=396.12 Aligned_cols=273 Identities=22% Similarity=0.251 Sum_probs=206.3
Q ss_pred CcceeeeccCCCcccccccccCceeecCCCCCCCCCCC--C-cCCCCCcccCcCCCCHHHHHHHHHHHcCCCCCCCCCCC
Q 022256 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGV--M-SISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRD 77 (300)
Q Consensus 1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~--~-~~~~~~d~~Gpmarsv~Dl~~~~~vl~g~~~~d~~~~~ 77 (300)
++++|+|||||||||+||+||||||||||+|+||+.|+ . +.+.++|++|||||||+|+++++++|.|.|+.|+.+.+
T Consensus 162 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~ 241 (493)
T 3a2q_A 162 LSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAP 241 (493)
T ss_dssp SCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCCCC
T ss_pred CCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCCCccccc
Confidence 58999999999999999999999999999999999998 5 77789999999999999999999999999998877654
Q ss_pred CCCC---CCCCCCCCccEEEEecc--------------hHHHHHHHHHHCCCEEEEecCC-cchhhHHHHHhhhhchhhh
Q 022256 78 FPFA---DPFSVDITKLTVGYLED--------------AEMEVVQVLAEKGIKMVPFKLN-YTVDSVQGILNFTMDVDML 139 (300)
Q Consensus 78 ~~~~---~~~~~~~~~lrIg~~~~--------------~~~~a~~~L~~~G~~vvev~~~-~~~~~~~~~~~~~~~~~~~ 139 (300)
.+.. .....+.+++||||+.+ +++++++.|+++|++|++++++ ...+.....+...+..+..
T Consensus 242 ~p~~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~e~~ 321 (493)
T 3a2q_A 242 TASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVNDAYPEALGDRSFLKDYSTICDVAIA 321 (493)
T ss_dssp CCSSCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCCGGGGCCTHHHHHHHHHHHHHH
T ss_pred CCCcchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 3311 11122468899998653 2457889999999999999876 2211222223333333433
Q ss_pred h---hhHHHHh-cCCCchhhhhhccHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHc-c-CcEEEecCCC---------
Q 022256 140 A---HFDEWQR-SGKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESF-I-VDAFIGNVTD--------- 204 (300)
Q Consensus 140 ~---~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~-~-~D~li~P~~~--------- 204 (300)
. .+..+.. ......+.+. ...+++.+..++..+|.++++.|.++++++.++| + +|+||+|+..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~ 399 (493)
T 3a2q_A 322 REIERNGELIGRPLTEDDVEWT--SWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGEL 399 (493)
T ss_dssp HHHHHHHHHHTSCCCTTTSCHH--HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCSSCCCBTTTT
T ss_pred HHHHHHHHHhcCccChhhcCHH--HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCccc
Confidence 3 2222221 1111222222 2245777889999999999999999999999999 6 9999998631
Q ss_pred ----------------------CccccccccCCCCEEEecccccCCCCCCCCCCCCCcceeEEEecCCCChHHHHHHHHH
Q 022256 205 ----------------------WEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIA 262 (300)
Q Consensus 205 ----------------------~~~t~~~nl~g~PaisvP~g~~~~~~~p~~~~~~~~pvglqlig~~~~D~~lL~~a~~ 262 (300)
..||.+||++|+|++|||+|+..+ |+|+||||||++++|+.||++|++
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~----------GlPvGvQlvg~~~~d~~lL~~A~~ 469 (493)
T 3a2q_A 400 MLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSD----------GMPIGVQIVAAYGREDLLLQVAAQ 469 (493)
T ss_dssp CCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTT----------SCEEEEEEEESTTCHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhhhhcccccccccCCCceeccCCcCCC----------CCCeEEEEecCCCChHHHHHHHHH
Confidence 135778999999999999998654 356999999999999999999999
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCC
Q 022256 263 YQSVTDHHKQRPPIDNLGPNDIIPD 287 (300)
Q Consensus 263 lE~~~~~~~~~p~~~~~~~~~~~~~ 287 (300)
||++++|.++.|++ ..|+..+|.
T Consensus 470 lE~~~~~~~~~p~~--~~~~~~~~~ 492 (493)
T 3a2q_A 470 LEGALPWVARRPQL--LNPSRKIPA 492 (493)
T ss_dssp HHHHSCCTTCCCGG--GC-------
T ss_pred HHHhcCcccCCCCC--CCCccCCCC
Confidence 99999998877775 677777764
No 3
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=1.6e-52 Score=389.97 Aligned_cols=264 Identities=25% Similarity=0.371 Sum_probs=198.9
Q ss_pred CcceeeeccCCCcccccccccCceeecCCCCCCCCCCCCcCCCCCcccCcCCCCHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022256 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPF 80 (300)
Q Consensus 1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~~~~~~~~d~~Gpmarsv~Dl~~~~~vl~g~~~~d~~~~~~~~ 80 (300)
++++|+|||||||||+||+||||||||||+|+||+.|++|++.++|++|||||||+|+++++++|.|.|+.|+.+...++
T Consensus 166 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~~~~~~~ 245 (485)
T 3ip4_A 166 LVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDD 245 (485)
T ss_dssp SCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCC
T ss_pred CCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCcccccccccCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999987765543
Q ss_pred CC---CCCCCCCccEEEEecc------------hHHHHHHHHHHCCCEEEEecCCcchhhHHHHHhhhhchhhhhhhHHH
Q 022256 81 AD---PFSVDITKLTVGYLED------------AEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEW 145 (300)
Q Consensus 81 ~~---~~~~~~~~lrIg~~~~------------~~~~a~~~L~~~G~~vvev~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (300)
.. ....+++++||||+.+ +++++++.|+++|++|+++++|...+ ....+...+..|....+..+
T Consensus 246 ~~~~~~~~~~~~~lrigv~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~-~~~~~~~~~~~e~~~~~~~~ 324 (485)
T 3ip4_A 246 VDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKF-GIPSYYVIASSEASSNLSRF 324 (485)
T ss_dssp CCCSTTTTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGG-HHHHHHHHHHHHHHHHTTTC
T ss_pred cchhhhhccCccCcEEEEECCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCcHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 32 2233578999999864 24678999999999999999885432 22223223333332222111
Q ss_pred Hhc-------CCCch---hhh------hhccHHHHHhhh-----ccCHHHHHHHHHHHHHHHHHHHHHcc-CcEEEecCC
Q 022256 146 QRS-------GKDDV---YEA------QDQWPVELRRSR-----IITAVDYMQAQRARGKLIREVKESFI-VDAFIGNVT 203 (300)
Q Consensus 146 ~~~-------~~~~~---~~~------~~~~~~~l~~~~-----~~s~~~~~~a~~~r~~~~~~~~~~~~-~D~li~P~~ 203 (300)
... ..... +.. ......++..+. .....+|.++++.|.++++++.++|+ +|+||+|+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~ 404 (485)
T 3ip4_A 325 DGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTA 404 (485)
T ss_dssp SSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHHTTCSEEEEESS
T ss_pred hhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCC
Confidence 000 00000 000 000111222222 11223588899999999999999997 999999974
Q ss_pred C-------------------CccccccccCCCCEEEecccccCCCCCCCCCCCCCcceeEEEecCCCChHHHHHHHHHHH
Q 022256 204 D-------------------WEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQ 264 (300)
Q Consensus 204 ~-------------------~~~t~~~nl~g~PaisvP~g~~~~~~~p~~~~~~~~pvglqlig~~~~D~~lL~~a~~lE 264 (300)
. ..||.+||++|+|++|||+|+. + |+|+||||+|++++|+.||++|++||
T Consensus 405 ~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~----------GlPvGlqlvg~~~~d~~lL~~A~~lE 473 (485)
T 3ip4_A 405 PTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-N----------GRPIGLQFIGKPFDEKTLYRVAYQYE 473 (485)
T ss_dssp SSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-T----------TEEEEEEEECSTTCHHHHHHHHHHHH
T ss_pred CCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-C----------CCCEeEEEEcCCCCHHHHHHHHHHHH
Confidence 2 1277889999999999999986 2 46799999999999999999999999
Q ss_pred hhcCCCCCCCCC
Q 022256 265 SVTDHHKQRPPI 276 (300)
Q Consensus 265 ~~~~~~~~~p~~ 276 (300)
++++|++++|++
T Consensus 474 ~~~~~~~~~p~~ 485 (485)
T 3ip4_A 474 TQYNLHDVYEKL 485 (485)
T ss_dssp HHSCCTTTGGGC
T ss_pred HhcCcccCCCCC
Confidence 999998877754
No 4
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=1.8e-52 Score=391.64 Aligned_cols=256 Identities=23% Similarity=0.370 Sum_probs=192.1
Q ss_pred CcceeeeccCCCcccccccccCceeecCCCCCCCCCCCCcCCCCCcccCcCCCCHHHHHHHHHHHcCCCCCCCCCCC-C-
Q 022256 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRD-F- 78 (300)
Q Consensus 1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~~~~~~~~d~~Gpmarsv~Dl~~~~~vl~g~~~~d~~~~~-~- 78 (300)
++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|+|.|+.|+.+.. .
T Consensus 183 ~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vlag~d~~D~~~~~~~~ 262 (521)
T 3a1k_A 183 DVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVE 262 (521)
T ss_dssp SSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHHHCSCCSSCTTSCTTCC
T ss_pred CcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHHHhCCCCCCccccccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999988876521 1
Q ss_pred --CCCCCCCCCCCccEEEEecc-------------hHHHHHHHHHHCCCEEEEecCCcchhhHHHHHhhhhch-------
Q 022256 79 --PFADPFSVDITKLTVGYLED-------------AEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDV------- 136 (300)
Q Consensus 79 --~~~~~~~~~~~~lrIg~~~~-------------~~~~a~~~L~~~G~~vvev~~~~~~~~~~~~~~~~~~~------- 136 (300)
++......+++++||||+.+ +++++++.|+++|++|+++++|....... .+......
T Consensus 263 ~~~~~~~l~~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~Ga~v~ev~~p~~~~~~~-~~~~~~~~~~~~~l~ 341 (521)
T 3a1k_A 263 AGDYLSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNIPWHLHAFH-IWNVIATDGGAYQML 341 (521)
T ss_dssp CCCSSTTTTSCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGGGTCEEEEECCTHHHHHHH-HHHHHHHHHHHHHTT
T ss_pred CcchhhhhccCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCchHhHHH-HHHHHHHHHHHhhhh
Confidence 22222333578999999653 24678899999999999999875322211 11111100
Q ss_pred ---------------hhhhhhHHHHhcCCCchhhhhhccHHHHHhh----hccCHHHHHHHHHHHHHHHHHHHHHcc-Cc
Q 022256 137 ---------------DMLAHFDEWQRSGKDDVYEAQDQWPVELRRS----RIITAVDYMQAQRARGKLIREVKESFI-VD 196 (300)
Q Consensus 137 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~s~~~~~~a~~~r~~~~~~~~~~~~-~D 196 (300)
+....+..|..... +.+.+. ...++..+ ..++..+|.++++.|+++++++.++|+ +|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--v~~~~~~g~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 418 (521)
T 3a1k_A 342 DGNGYGMNAEGLYDPELMAHFASRRIQHA-DALSET--VKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQFD 418 (521)
T ss_dssp TTTTTCSSSCSCCCHHHHHHHHHHHHHSG-GGSCHH--HHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hccccccchhhhhhHHHHHHHHHHhhhhh-hhcCHH--HHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11111112221111 111111 11223333 235667899999999999999999996 99
Q ss_pred EEEecCCC-----------------------CccccccccCCCCEEEecccccCCCCCCCCCCCCCcceeEEEecCCCCh
Q 022256 197 AFIGNVTD-----------------------WEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHD 253 (300)
Q Consensus 197 ~li~P~~~-----------------------~~~t~~~nl~g~PaisvP~g~~~~~~~p~~~~~~~~pvglqlig~~~~D 253 (300)
+||+|+.. +.||.+||++|+|++|||+|+ .+ |+|+||||||++++|
T Consensus 419 vll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~----------GlPvGlQlvg~~~~d 487 (521)
T 3a1k_A 419 VLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL-VN----------GLPVGMMITGRHFDD 487 (521)
T ss_dssp EEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEE-ET----------TEEEEEEEECSTTCH
T ss_pred EEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeeccc-CC----------CCCeeEEEEcCCCCH
Confidence 99999742 135778999999999999998 33 467999999999999
Q ss_pred HHHHHHHHHHHh-hcCCCC
Q 022256 254 HIALALAIAYQS-VTDHHK 271 (300)
Q Consensus 254 ~~lL~~a~~lE~-~~~~~~ 271 (300)
+.||++|+++|+ ..+|++
T Consensus 488 ~~LL~~A~~~E~~~~~~~~ 506 (521)
T 3a1k_A 488 ATVLRVGRAFEKLRGAFPT 506 (521)
T ss_dssp HHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhhcccCC
Confidence 999999999999 777755
No 5
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=3.7e-52 Score=387.00 Aligned_cols=258 Identities=22% Similarity=0.344 Sum_probs=195.0
Q ss_pred CcceeeeccCCCcccccccccCceeecCCCCCCCCCCCCcCCCCCcccCcCCCCHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022256 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPF 80 (300)
Q Consensus 1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~~~~~~~~d~~Gpmarsv~Dl~~~~~vl~g~~~~d~~~~~~~~ 80 (300)
++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|.|.|+.|+.+.+.++
T Consensus 154 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~ 233 (476)
T 2gi3_A 154 MVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKV 233 (476)
T ss_dssp SSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCC
T ss_pred CCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999998877654443
Q ss_pred --CCCCCCCCCccEEEEecc------------hHHHHHHHHHHCCCEEEEecCCcchhhHHHHHhhhhchhhhhhhHH--
Q 022256 81 --ADPFSVDITKLTVGYLED------------AEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDE-- 144 (300)
Q Consensus 81 --~~~~~~~~~~lrIg~~~~------------~~~~a~~~L~~~G~~vvev~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 144 (300)
........+++||||+.+ +++++++.|+++|++|+++++|...... ..+...+..+....+..
T Consensus 234 ~~~~~~~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~~~-~~~~~~~~~e~~~~~~~~~ 312 (476)
T 2gi3_A 234 DFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSV-ATYYVIAPAEASSNLARFD 312 (476)
T ss_dssp CSSTTTTSCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHH-HHHHHHHHHHHHTC-----
T ss_pred chhhhhhcCCCCCEEEEECccccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCchHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 112223468899999864 2467899999999999999987543222 22222222233222211
Q ss_pred ---------------HHhcCCCchhhhhhccHHHHHhhhccC-----HHHHHHHHHHHHHHHHHHHHHcc-CcEEEecCC
Q 022256 145 ---------------WQRSGKDDVYEAQDQWPVELRRSRIIT-----AVDYMQAQRARGKLIREVKESFI-VDAFIGNVT 203 (300)
Q Consensus 145 ---------------~~~~~~~~~~~~~~~~~~~l~~~~~~s-----~~~~~~a~~~r~~~~~~~~~~~~-~D~li~P~~ 203 (300)
+......+.+.+. ...++..+..++ ..+|.++++.|+++++++.++|+ +|+||+|+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~ 390 (476)
T 2gi3_A 313 GVKYGLRIKEKGLREMYMKTRNVGFGEE--VRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTS 390 (476)
T ss_dssp -------------------CCSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEEESC
T ss_pred ccccccccccccHHHHHHhhhhhhcCHH--HHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCC
Confidence 1000011112221 112344444333 23788899999999999999997 999999974
Q ss_pred C------------------CccccccccCCCCEEEecccccCCCCCCCCCCCCCcceeEEEecCCCChHHHHHHHHHHHh
Q 022256 204 D------------------WEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQS 265 (300)
Q Consensus 204 ~------------------~~~t~~~nl~g~PaisvP~g~~~~~~~p~~~~~~~~pvglqlig~~~~D~~lL~~a~~lE~ 265 (300)
. +.||.+||++|+|++|||+|+. + |+|+||||+|++++|+.||++|+++|+
T Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~----------GlPvGvqlvg~~~~d~~lL~~A~~lE~ 459 (476)
T 2gi3_A 391 PVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-N----------NLPVGVQVIGRRFADGKVFRIARAIEK 459 (476)
T ss_dssp SSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE-T----------TEEEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCcccccccchhhhhccceeccccccCCceEEEecccC-C----------CCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 2 2467889999999999999986 2 467999999999999999999999999
Q ss_pred hcCCCCC
Q 022256 266 VTDHHKQ 272 (300)
Q Consensus 266 ~~~~~~~ 272 (300)
+++|+++
T Consensus 460 ~~~~~~~ 466 (476)
T 2gi3_A 460 NSPYNEN 466 (476)
T ss_dssp HCTTSBT
T ss_pred hcCcccc
Confidence 9998653
No 6
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=4.8e-52 Score=385.30 Aligned_cols=262 Identities=22% Similarity=0.389 Sum_probs=197.5
Q ss_pred CcceeeeccCCCcccccccccCceeecCCCCCCCCCCCCcCCCCCcccCcCCCCHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022256 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPF 80 (300)
Q Consensus 1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~~~~~~~~d~~Gpmarsv~Dl~~~~~vl~g~~~~d~~~~~~~~ 80 (300)
++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|.|.|+.|+.+.+.++
T Consensus 159 ~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~ 238 (478)
T 3h0l_A 159 SAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPV 238 (478)
T ss_dssp SSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCC
T ss_pred CCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccccCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999987765554
Q ss_pred CC---CCCCCCCccEEEEecc------------hHHHHHHHHHHCCCEEEEecCCcchhhHHHHHhhhhchhhhhhhHHH
Q 022256 81 AD---PFSVDITKLTVGYLED------------AEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEW 145 (300)
Q Consensus 81 ~~---~~~~~~~~lrIg~~~~------------~~~~a~~~L~~~G~~vvev~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (300)
.. ....+++++||||+.+ +++++++.|+++|++|+++++|.. +.....+...+..|....+..+
T Consensus 239 ~~~~~~~~~~~~~lrIgv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~v~~p~~-~~~~~~~~~~~~~e~~~~~~~~ 317 (478)
T 3h0l_A 239 PEWSEEVKKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEKEGFEIKEVSLPHV-KYSIPTYYIIAPSEASSNLARY 317 (478)
T ss_dssp CCHHHHTTCCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTG-GGHHHHHHHHHHHHHHHHTTTC
T ss_pred cchhhhhccCCCCCEEEEECCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCcH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 32 1223578999999864 346789999999999999998853 3222223233333333322111
Q ss_pred Hhc--CC-----C---chhhh------hhccHHHHHhhh-----ccCHHHHHHHHHHHHHHHHHHHHHcc-CcEEEecCC
Q 022256 146 QRS--GK-----D---DVYEA------QDQWPVELRRSR-----IITAVDYMQAQRARGKLIREVKESFI-VDAFIGNVT 203 (300)
Q Consensus 146 ~~~--~~-----~---~~~~~------~~~~~~~l~~~~-----~~s~~~~~~a~~~r~~~~~~~~~~~~-~D~li~P~~ 203 (300)
... .. . +.+.. ......++..+. .....+|.++++.|.++++++.++|+ +|+||+|+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~ 397 (478)
T 3h0l_A 318 DGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTT 397 (478)
T ss_dssp SSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESC
T ss_pred hhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCC
Confidence 000 00 0 00000 000111233332 12224588899999999999999997 999999974
Q ss_pred C-------------------CccccccccCCCCEEEecccccCCCCCCCCCCCCCcceeEEEecCCCChHHHHHHHHHHH
Q 022256 204 D-------------------WEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQ 264 (300)
Q Consensus 204 ~-------------------~~~t~~~nl~g~PaisvP~g~~~~~~~p~~~~~~~~pvglqlig~~~~D~~lL~~a~~lE 264 (300)
. ..||.+||++|+|++|||+|+ .+ |+|+||||+|++++|+.||++|+++|
T Consensus 398 ~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~----------GlPvGlQlvg~~~~D~~LL~~A~~lE 466 (478)
T 3h0l_A 398 PTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KD----------GLPVGGQLIGKHWDETTLLQISYLWE 466 (478)
T ss_dssp SSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ET----------TEEEEEEEEECTTCHHHHHHHHHHHH
T ss_pred CCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CC----------CCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 2 027788999999999999998 33 46799999999999999999999999
Q ss_pred hhcCCCCCCC
Q 022256 265 SVTDHHKQRP 274 (300)
Q Consensus 265 ~~~~~~~~~p 274 (300)
++++|++++|
T Consensus 467 ~~~~~~~~~p 476 (478)
T 3h0l_A 467 QKFKHYEKIP 476 (478)
T ss_dssp HHSCGGGCCS
T ss_pred HhcCcccCCC
Confidence 9999977655
No 7
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=5.1e-52 Score=388.20 Aligned_cols=258 Identities=24% Similarity=0.354 Sum_probs=195.9
Q ss_pred CcceeeeccCCCcccccccccCceeecCCCCCCCCCCCCcCCCCCcccCcCCCCHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022256 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPF 80 (300)
Q Consensus 1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~~~~~~~~d~~Gpmarsv~Dl~~~~~vl~g~~~~d~~~~~~~~ 80 (300)
++++|+|||||||||+||+||||||||||+|+||+.|++|++.++|++|||||||+|+++++++|.|.|+.|+.+.+.++
T Consensus 177 ~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~~~ 256 (503)
T 1m22_A 177 LASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPG 256 (503)
T ss_dssp SSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCCCCTTCGGGGGCTT
T ss_pred CCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHHHcCCCCCCcccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998876554433
Q ss_pred CC------CCC-CCCCccEEEEecc----------hHHHHHHHHHHCCCEEEEecCCcchhhHHHHHhhhhchhhhhhhH
Q 022256 81 AD------PFS-VDITKLTVGYLED----------AEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFD 143 (300)
Q Consensus 81 ~~------~~~-~~~~~lrIg~~~~----------~~~~a~~~L~~~G~~vvev~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (300)
.. ... ..++++||||+.+ +++++++.|+++|++|++++++...+.. ..+...+..+....+.
T Consensus 257 ~~~~~~~~~~~~~~~~~lrIgv~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~~~-~~~~~~~~~e~~~~~~ 335 (503)
T 1m22_A 257 RAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWA-EAERTLLLYEFKAGLE 335 (503)
T ss_dssp CCCCCGGGGCCTTTTTTCEEEEECSGGGGSTTHHHHHHHHHHHHHHTTCEEEEECCTTTTTTH-HHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCEEEEECccccCCHHHHHHHHHHHHHHHHcCCEEEEeCCCcHHHHH-HHHHHHHHHHHHHHHH
Confidence 11 111 1467899999764 3567899999999999999987532111 1111222233333333
Q ss_pred HHHhcCC---C---chhh-----------h-hhccHHHHHhhhccCHHHHHHHHHHHHHHHHH--HHHHcc---CcEEEe
Q 022256 144 EWQRSGK---D---DVYE-----------A-QDQWPVELRRSRIITAVDYMQAQRARGKLIRE--VKESFI---VDAFIG 200 (300)
Q Consensus 144 ~~~~~~~---~---~~~~-----------~-~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~--~~~~~~---~D~li~ 200 (300)
.|..... . +.+. . ......++..+..++..+|.++++.|++++++ +.++|+ +|+||+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~ 415 (503)
T 1m22_A 336 RYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVA 415 (503)
T ss_dssp HHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEE
T ss_pred HHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEe
Confidence 2221100 0 0000 0 00112345556678889999999888888766 888885 899999
Q ss_pred cCCC-------------CccccccccCCCCEEEecccccCCCCCCCCCCCCCcceeEEEecCCCChHHHHHHHHHHHhhc
Q 022256 201 NVTD-------------WEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSVT 267 (300)
Q Consensus 201 P~~~-------------~~~t~~~nl~g~PaisvP~g~~~~~~~p~~~~~~~~pvglqlig~~~~D~~lL~~a~~lE~~~ 267 (300)
|+.. ..||.+||++|+|++|||+|+. + |+|+||||||++++|+.||++|+++|+++
T Consensus 416 Pt~~~a~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~----------GlPvGvqlvg~~~~d~~lL~~A~~~E~~~ 484 (503)
T 1m22_A 416 PTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQI-D----------GLPVGLLFMGTAWSEPKLIEMAYAYEQRT 484 (503)
T ss_dssp ECCCCCCBTTC---CCTTCCHHHHHHHTCCEEEEEEEEE-T----------TEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred CCCccCcccccccCcccccccccchhhCCCeEEeccccC-C----------CCCeEEEEECCCCChHHHHHHHHHHHHhh
Confidence 9752 2367889999999999999986 2 46799999999999999999999999999
Q ss_pred CCC
Q 022256 268 DHH 270 (300)
Q Consensus 268 ~~~ 270 (300)
+|+
T Consensus 485 ~~~ 487 (503)
T 1m22_A 485 RAR 487 (503)
T ss_dssp CCC
T ss_pred CCC
Confidence 883
No 8
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=1.2e-51 Score=376.47 Aligned_cols=243 Identities=24% Similarity=0.288 Sum_probs=196.4
Q ss_pred CcceeeeccCCCcccccccccCceeecCCCCCCCCCCCCcCCCCCcccCcCCCCHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022256 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPF 80 (300)
Q Consensus 1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~~~~~~~~d~~Gpmarsv~Dl~~~~~vl~g~~~~d~~~~~~~~ 80 (300)
++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|.|.+ +.. +
T Consensus 143 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~--~~~----~- 215 (414)
T 1o9p_A 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS--EFS----G- 215 (414)
T ss_dssp SCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCG--GGS----S-
T ss_pred CCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCC--ccc----c-
Confidence 589999999999999999999999999999999999999999999999999999999999999999975 110 0
Q ss_pred CCCCCCCCCccEEEEecc------------hHHHHHHHHHHCCCEEEEecCCcchhhHHHHHhhhhchhhhhhhHHHHhc
Q 022256 81 ADPFSVDITKLTVGYLED------------AEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRS 148 (300)
Q Consensus 81 ~~~~~~~~~~lrIg~~~~------------~~~~a~~~L~~~G~~vvev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (300)
....+++||||+.+ +++++++.|+++|++|++++++...+.....+...+..|....+..+...
T Consensus 216 ----~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 291 (414)
T 1o9p_A 216 ----IVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSE 291 (414)
T ss_dssp ----CCCCSSCEEEECCCGGGCCCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ----ccCCCCCEEEEECccccCCCCHHHHHHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11357899999764 35678999999999999998875434433333334444555555544432
Q ss_pred CCCchhhhhhccHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHcc-CcEEEecCCC-------------CccccccccC
Q 022256 149 GKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFI-VDAFIGNVTD-------------WEKVCLGNLV 214 (300)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~-~D~li~P~~~-------------~~~t~~~nl~ 214 (300)
.. +.+.+. ...++..+..++..+|.++++.|+++++++.++|+ +|+||+|+.. ..||.+||++
T Consensus 292 ~~-~~~~~~--~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~t~~~nl~ 368 (414)
T 1o9p_A 292 HH-DEIAPM--LRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLM 368 (414)
T ss_dssp SG-GGSCHH--HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCCCGGGTHHHHHH
T ss_pred Ch-hhcCHH--HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccCCcccchhhhhHhc
Confidence 21 222222 23457788899999999999999999999999997 9999999752 1467889999
Q ss_pred CCCEEEecccccCCCCCCCCCCCCCcceeEEEecCCCChHHHHHHHHHHHhhcC
Q 022256 215 GLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSVTD 268 (300)
Q Consensus 215 g~PaisvP~g~~~~~~~p~~~~~~~~pvglqlig~~~~D~~lL~~a~~lE~~~~ 268 (300)
|+|++|||+|+.. | +|+||||+|++++|+.||++|+++|++++
T Consensus 369 G~PaisvP~g~~~-G----------lPvGvqlvg~~~~d~~lL~~a~~le~~~~ 411 (414)
T 1o9p_A 369 GNPCVNVPVLKVG-G----------LPIGVQVIARFGNDAHALATAWFLEDALA 411 (414)
T ss_dssp CCCEEEEEEEEET-T----------EEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCC-C----------CCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 9999999999875 3 56999999999999999999999999864
No 9
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-51 Score=377.68 Aligned_cols=239 Identities=20% Similarity=0.262 Sum_probs=193.8
Q ss_pred CcceeeeccCCCcccccccccCceeecCCCCCCCCCCCCcCCCCCcccCcCCCCHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022256 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPF 80 (300)
Q Consensus 1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~~~~~~~~d~~Gpmarsv~Dl~~~~~vl~g~~~~d~~~~~~~~ 80 (300)
++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|.|. +.|+.
T Consensus 159 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~------ 231 (434)
T 2dc0_A 159 IGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLE------ 231 (434)
T ss_dssp SSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCC------
T ss_pred CCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcc------
Confidence 58999999999999999999999999999999999999999999999999999999999999999998 65542
Q ss_pred CCCCCCCCCccEEEEecc------------hHHHHHHHHHHCCCEEEEecCCcchhhHHHHHhhhhchhhhhhhHHHHhc
Q 022256 81 ADPFSVDITKLTVGYLED------------AEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRS 148 (300)
Q Consensus 81 ~~~~~~~~~~lrIg~~~~------------~~~~a~~~L~~~G~~vvev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (300)
+.+++||||+.+ +++++++.|+++|++|+++++| . +.....+...+..|....+..+...
T Consensus 232 ------~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p-~-~~~~~~~~~~~~~e~~~~~~~~~~~ 303 (434)
T 2dc0_A 232 ------GVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP-L-EGVYEVYTRLVRYEAARIHEKALKE 303 (434)
T ss_dssp ------CCCSCEEEECHHHHTTCSCHHHHHHHHHHHHHTTTTTCEEEECCCC-C-TTHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred ------cccCCEEEEECccccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCC-c-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 246789999764 3467889999999999999887 3 3332233333444555444444332
Q ss_pred CCCchhhhhhccHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHcc-CcEEEecCCC-----------------------
Q 022256 149 GKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFI-VDAFIGNVTD----------------------- 204 (300)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~-~D~li~P~~~----------------------- 204 (300)
. .+.+.+. ...++..+..++..+|.++++.|+++++++.++|+ +|+||+|+..
T Consensus 304 ~-~~~~~~~--~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~ 380 (434)
T 2dc0_A 304 H-PEGFSPQ--VREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREA 380 (434)
T ss_dssp C-GGGSCHH--HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHH
T ss_pred c-hhhcCHH--HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhhh
Confidence 2 1222222 23457778889999999999999999999999997 9999998741
Q ss_pred -CccccccccCCCCEEEecccccCCCCCCCCCCCCCcceeEEEecCCCChHHHHHHHHHHHhhcC
Q 022256 205 -WEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSVTD 268 (300)
Q Consensus 205 -~~~t~~~nl~g~PaisvP~g~~~~~~~p~~~~~~~~pvglqlig~~~~D~~lL~~a~~lE~~~~ 268 (300)
..||.+||++|+|++|||+|+ .+ |+|+||||+|++++|+.||++|+++|++++
T Consensus 381 ~~~~t~~~nl~G~PaisvP~g~-~~----------GlPvGvqlvg~~~~d~~lL~~A~~lE~~~g 434 (434)
T 2dc0_A 381 FITLTLPFSLLGVPTLALPFAK-VE----------GMPVGLQVVGAYGEDGKVLALGGWLEARLG 434 (434)
T ss_dssp HHTTTHHHHHTTCCEEEEEEEE-ET----------TEEEEEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred hhhhhhhhhhhCCCeEEEecCC-CC----------CCCeEEEEECCCCchHHHHHHHHHHHHhhC
Confidence 225778999999999999998 43 467999999999999999999999998753
No 10
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=1.4e-50 Score=380.50 Aligned_cols=272 Identities=20% Similarity=0.247 Sum_probs=199.8
Q ss_pred CcceeeeccCCCcccccccccCceeecCCCCCCCCCCCCcCCCC----CcccCcCCCCHHHHHHHHHHHcCCCC--CCCC
Q 022256 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISES----LDKLGPFCRSAADCTIVLDAIQGKDP--DDLS 74 (300)
Q Consensus 1 ~~~~alGtD~gGSiR~PAa~~Gv~G~kPT~g~is~~G~~~~~~~----~d~~Gpmarsv~Dl~~~~~vl~g~~~--~d~~ 74 (300)
++++|+|||||||||+||+||||||||||+||+|+.|+.+.+.+ +|++|||||||+|+++++++|.+.++ .|+.
T Consensus 223 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~~~~d~~ 302 (573)
T 3ppm_A 223 GSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPT 302 (573)
T ss_dssp SCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHHCTT
T ss_pred CCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccccccCCC
Confidence 57999999999999999999999999999999999999998765 89999999999999999999999774 3665
Q ss_pred CCCCCCCCCCCCCCCccEEEEecc------------hHHHHHHHHHHCCCEEEEecCCcchhhHHHHHhhhhchhhhhhh
Q 022256 75 SRDFPFADPFSVDITKLTVGYLED------------AEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHF 142 (300)
Q Consensus 75 ~~~~~~~~~~~~~~~~lrIg~~~~------------~~~~a~~~L~~~G~~vvev~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (300)
..+.+|.+......+++||||+.+ +++++++.|+++|++|+++++|...+.+..++...+..+....+
T Consensus 303 ~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~~dg~~~~ 382 (573)
T 3ppm_A 303 VPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGRSF 382 (573)
T ss_dssp SCCCCCCHHHHTCCCCCEEEECSCCSSSCCCHHHHHHHHHHHHHHHHTTCEEEECCCTTHHHHHHTHHHHHHTTBTTHHH
T ss_pred CCccccchhhcccCCCCEEEEEcccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHHHHHhhhhHHHH
Confidence 555555432223578999999864 35678999999999999999885443332222222222222221
Q ss_pred HH-HHhcCCCchh---------------------hh-hhccHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHcc---Cc
Q 022256 143 DE-WQRSGKDDVY---------------------EA-QDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFI---VD 196 (300)
Q Consensus 143 ~~-~~~~~~~~~~---------------------~~-~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~---~D 196 (300)
.. +..+...... .+ ...+...+..+...+..++++++.+|+++++++.+.|+ +|
T Consensus 383 ~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lD 462 (573)
T 3ppm_A 383 LQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLD 462 (573)
T ss_dssp HGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 11 1111000000 00 00111234455678899999999999999999999994 99
Q ss_pred EEEecCCC--------------CccccccccCCCCEEEecccccCC-------CCCCCC------------CCCCCccee
Q 022256 197 AFIGNVTD--------------WEKVCLGNLVGLPVIVVPAGFKNI-------SNPPPS------------GSRRRTTIT 243 (300)
Q Consensus 197 ~li~P~~~--------------~~~t~~~nl~g~PaisvP~g~~~~-------~~~p~~------------~~~~~~pvg 243 (300)
+||+|+.. +.||.+||++|+|+++||+|+... +..+.. ...+|+|+|
T Consensus 463 aLL~Pt~~pA~~h~~~~~~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVg 542 (573)
T 3ppm_A 463 VLLTPMLGPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVA 542 (573)
T ss_dssp EEEEECCCSCCBTTCGGGCGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEE
T ss_pred EeeCCCCCCCcCCccccccccccchhhhhHhhCCCeEEEecccccccccccccccccccchhhhhhhhhhhhccCCCceE
Confidence 99998631 247889999999999999997631 111110 124799999
Q ss_pred EEEecCCCChHHHHHHHHHHHhhcCCCCC
Q 022256 244 TGIYAPPKHDHIALALAIAYQSVTDHHKQ 272 (300)
Q Consensus 244 lqlig~~~~D~~lL~~a~~lE~~~~~~~~ 272 (300)
|||||++++|++||++|+.+|++++.+++
T Consensus 543 VQiVGrr~~EEklL~~a~~IE~~l~~~~~ 571 (573)
T 3ppm_A 543 VQCVALPWQEELCLRFMREVEQLMTPQKQ 571 (573)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHCTTSC
T ss_pred EEEeCCCCcHHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999986543
No 11
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=37.50 E-value=96 Score=26.48 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=23.2
Q ss_pred CCccEEEEecc-------hHHHHHHHHHHCCCEEEEecCC
Q 022256 88 ITKLTVGYLED-------AEMEVVQVLAEKGIKMVPFKLN 120 (300)
Q Consensus 88 ~~~lrIg~~~~-------~~~~a~~~L~~~G~~vvev~~~ 120 (300)
.+.+||-+..- ..-..++.|++.||+|+-+..+
T Consensus 20 ~~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~ 59 (400)
T 4amg_A 20 FQSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATGG 59 (400)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECS
T ss_pred CCCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 46789987643 1346788899999999766544
No 12
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=34.71 E-value=58 Score=24.92 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=23.6
Q ss_pred CCccEEEEecc-h----HHHHHHHHHHCCCEEEEec
Q 022256 88 ITKLTVGYLED-A----EMEVVQVLAEKGIKMVPFK 118 (300)
Q Consensus 88 ~~~lrIg~~~~-~----~~~a~~~L~~~G~~vvev~ 118 (300)
..++||++-.| + -+..++.|+++|++|+++-
T Consensus 19 ~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G 54 (166)
T 3s5p_A 19 PGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLG 54 (166)
T ss_dssp CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcC
Confidence 45689988665 2 3467899999999999874
No 13
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=28.52 E-value=68 Score=24.61 Aligned_cols=30 Identities=20% Similarity=0.521 Sum_probs=22.0
Q ss_pred CccEEEEecc-h----HHHHHHHHHHCCCEEEEec
Q 022256 89 TKLTVGYLED-A----EMEVVQVLAEKGIKMVPFK 118 (300)
Q Consensus 89 ~~lrIg~~~~-~----~~~a~~~L~~~G~~vvev~ 118 (300)
.++||++-.| + -++.++.|++.|++|+++-
T Consensus 19 ~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G 53 (169)
T 3ph3_A 19 SHMKIGIGSDHGGYNLKREIADFLKKRGYEVIDFG 53 (169)
T ss_dssp --CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECC
T ss_pred CCCEEEEEeCchHHHHHHHHHHHHHHCCCEEEEcC
Confidence 4688988665 2 3467899999999999873
No 14
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=23.34 E-value=1e+02 Score=23.05 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=20.6
Q ss_pred cEEEEecc-----hHHHHHHHHHHCCCEEEEec
Q 022256 91 LTVGYLED-----AEMEVVQVLAEKGIKMVPFK 118 (300)
Q Consensus 91 lrIg~~~~-----~~~~a~~~L~~~G~~vvev~ 118 (300)
+||++-.| .-++.++.|++.|++|+++-
T Consensus 2 MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G 34 (149)
T 2vvr_A 2 KKIAFGCDHVGFILKHEIVAHLVERGVEVIDKG 34 (149)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTTCEEEECC
T ss_pred cEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeC
Confidence 46766543 23567889999999999873
No 15
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=23.05 E-value=1e+02 Score=23.10 Aligned_cols=28 Identities=21% Similarity=0.533 Sum_probs=19.9
Q ss_pred cEEEEecc-h----HHHHHHHHHHCCCEEEEec
Q 022256 91 LTVGYLED-A----EMEVVQVLAEKGIKMVPFK 118 (300)
Q Consensus 91 lrIg~~~~-~----~~~a~~~L~~~G~~vvev~ 118 (300)
+||++-.| + -+..++.|+++|++|+++-
T Consensus 1 MkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~G 33 (149)
T 3he8_A 1 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFG 33 (149)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECC
T ss_pred CEEEEEECchhHHHHHHHHHHHHHCCCEEEEcC
Confidence 35666444 1 2467899999999999873
No 16
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=21.87 E-value=1.1e+02 Score=23.30 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=21.3
Q ss_pred cEEEEecc-h----HHHHHHHHHHCCCEEEEec
Q 022256 91 LTVGYLED-A----EMEVVQVLAEKGIKMVPFK 118 (300)
Q Consensus 91 lrIg~~~~-~----~~~a~~~L~~~G~~vvev~ 118 (300)
+||++-.| + -++.++.|++.|++|+++-
T Consensus 4 MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G 36 (162)
T 2vvp_A 4 MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCG 36 (162)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHHHTTCEEEECS
T ss_pred CEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeC
Confidence 67877655 2 2467889999999999874
No 17
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=21.50 E-value=1.2e+02 Score=22.77 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=20.9
Q ss_pred cEEEEecc-h----HHHHHHHHHHCCCEEEEec
Q 022256 91 LTVGYLED-A----EMEVVQVLAEKGIKMVPFK 118 (300)
Q Consensus 91 lrIg~~~~-~----~~~a~~~L~~~G~~vvev~ 118 (300)
+||++-.| + -+..++.|+++|++|+++-
T Consensus 8 mkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~G 40 (148)
T 4em8_A 8 KRVFLSSDHAGVELRLFLSAYLRDLGCEVFDCG 40 (148)
T ss_dssp SEEEEEECGGGHHHHHHHHHHHHHTTCEEEECC
T ss_pred eEEEEEECchhHHHHHHHHHHHHHCCCEEEEeC
Confidence 57877554 2 3467899999999999873
Done!