RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022256
(300 letters)
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 131 bits (332), Expect = 2e-35
Identities = 52/257 (20%), Positives = 85/257 (33%), Gaps = 48/257 (18%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
M+P A+G++T GS+ P A CG A++P+F + GV S +LD +G F A D
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 61 VLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYLE-------DAEM-----EVVQVLA 108
L A+ G+ +G + + ++
Sbjct: 203 GLLAMTGRSEFSGIV-----------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAE 251
Query: 109 EKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRR-- 166
G + L V I D + D++ LR
Sbjct: 252 RAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDEIAP-------MLRASL 304
Query: 167 --SRIITAVDYMQAQRARGKLIREVKESFI-VDAFIG-------------NVTDWEKVCL 210
+ +T +Y +A+R + RE+ E F VD + + D L
Sbjct: 305 DATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNRL 364
Query: 211 GNLVGLPVIVVPAGFKN 227
L+G P + VP
Sbjct: 365 WTLMGNPCVNVPVLKVG 381
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 120 bits (304), Expect = 4e-31
Identities = 68/330 (20%), Positives = 111/330 (33%), Gaps = 71/330 (21%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
+ AIG+ET GS+ P A GV L+PT G V R G++ IS S D GP RS AD
Sbjct: 177 LASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAA 236
Query: 61 VLDAIQGKDPDDLSSRDFPFADP--FSVDITK-----LTVG-----YLEDAEM-----EV 103
VL AI G+D D ++ P ++ + +G L+ M +
Sbjct: 237 VLTAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQA 296
Query: 104 VQVLAEKGIKMVPFKL---NYTVDSVQGILNFTMDVDMLAHFDEWQRSGK---DDVYEAQ 157
L G +VP +L ++ + +L + L + R+ D+
Sbjct: 297 ATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAG-LERYFNTHRAPLRSLADLIAFN 355
Query: 158 DQWPVELRRSR------IITAV--------DYMQAQRARGKLIREVKESFI-----VDAF 198
+ ++ A Y++A+ +L +DA
Sbjct: 356 QAHS--KQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDAL 413
Query: 199 IG------------NVTDWEKVCL-GNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTG 245
+ + + G P + VP G + P G +
Sbjct: 414 VAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQ---IDGLPVG------LL-- 462
Query: 246 IYAPPKHDHIALALAIAYQSVTDHHKQRPP 275
+ + +A AY+ T RPP
Sbjct: 463 FMGTAWSEPKLIEMAYAYEQRTRAR--RPP 490
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 111 bits (281), Expect = 4e-28
Identities = 90/334 (26%), Positives = 140/334 (41%), Gaps = 77/334 (23%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
+ P A+GS+T GS+ P A CGV L+PT+G V R G+++ + SLD++GP RS D +
Sbjct: 153 LAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLAL 212
Query: 61 VLDAIQGKDPDDLSSRDFP--FADPFSVDITKLTVG----YLEDAEMEV-------VQVL 107
++DA G DP D +S D P F + + L +G L V ++V
Sbjct: 213 LMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGVVREALAGNSPGVERALEEALKVF 272
Query: 108 AEKGIKMVPFKLNYTVDSVQG--IL-------NFTMDVDMLAHFDEW---QRSGKD---D 152
E G+ + ++ IL N LA +D +R+ +
Sbjct: 273 RELGLSVREVSWPSLPQALAAYYILAPAEASSN-------LARYDGTLYGRRAAGEEVEG 325
Query: 153 VYEA-QDQWPVELRRSRII--TAV------D--YMQAQRARGKLIREVKESF-IVD---- 196
+ EA + + +E++R R++ T V + Y +AQ R +L E + F VD
Sbjct: 326 MMEATRALFGLEVKR-RVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLL 384
Query: 197 ------AF-IGNVTDWEKVCLG-------NLVGLPVIVVPAGFKNISNPPPSGSRRRTTI 242
AF G D + NL GLP + PAGF P G +
Sbjct: 385 PTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF---EGHLPVGLQ----- 436
Query: 243 TTGIYAPPKHDHIALALAIAYQSVTDHHKQRPPI 276
+ AP D L A+A++ T + P+
Sbjct: 437 ---LLAPWGEDERLLRAALAFEEATARAHLKAPL 467
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 108 bits (273), Expect = 6e-27
Identities = 79/335 (23%), Positives = 134/335 (40%), Gaps = 79/335 (23%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
MV A+GS+T GS+ P + CGV +PT+G V R G+++ + SLD++GP ++ D I
Sbjct: 154 MVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAI 213
Query: 61 VLDAIQGKDPDDLSSRDFP--FADPFSVDITKLTVG----YL--------EDAEMEVVQV 106
+++ I G+D +D ++ + F ++ + + E +++
Sbjct: 214 LMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKL 273
Query: 107 LAEKGIKMVPFKLNYTVDSVQG--IL-------NFTMDVDMLAHFD------EWQRSGKD 151
L G K+ K+ + SV ++ N LA FD + G
Sbjct: 274 LERLGAKVERVKIPHIKYSVATYYVIAPAEASSN-------LARFDGVKYGLRIKEKGLR 326
Query: 152 DVYEA--QDQWPVELRRSRII--TAV------D--YMQAQRARGKLIREVKESF-IVD-- 196
++Y + E+RR RI+ T + + +A + R K+ E+ E D
Sbjct: 327 EMYMKTRNVGFGEEVRR-RIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAI 385
Query: 197 --------AF-IGNVTDWEKVCLG-------NLVGLPVIVVPAGFKNISNPPPSGSRRRT 240
AF IG + D L NL GLP I VP GF SN P G +
Sbjct: 386 LTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF---SNNLPVGVQ--- 439
Query: 241 TITTGIYAPPKHDHIALALAIAYQSVTDHHKQRPP 275
+ D +A A + + +++
Sbjct: 440 -----VIGRRFADGKVFRIARAIEKNSPYNENGMF 469
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 107 bits (270), Expect = 1e-26
Identities = 82/339 (24%), Positives = 133/339 (39%), Gaps = 82/339 (24%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
+VP ++GS+T GS+ P A CGV ++PT+G V R G+++ + SLD++GP R+ D I
Sbjct: 166 LVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAI 225
Query: 61 VLDAIQGKDPDDLSSRDFP---FADPFSVDITKLTVG----YL--------EDAEMEVVQ 105
VL+AI G D +D +S F DI L V YL ++A V+
Sbjct: 226 VLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVE 285
Query: 106 VLAEKGIKMVPFKLNYTVDSVQG--IL-------NFTMDVDMLAHFD-------EWQRSG 149
L G + L T + ++ N L+ FD +
Sbjct: 286 TLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSN-------LSRFDGIRYGYHSKEAHS 338
Query: 150 KDDVYEA--QDQWPVELRRSRII--TAV------D--YMQAQRARGKLIREVKESF-IVD 196
+++Y+ + + E++R RI T D Y ++Q+ R + + + F D
Sbjct: 339 LEELYKMSRSEGFGKEVKR-RIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYD 397
Query: 197 AFIG------------NVTDWEKVCLG-------NLVGLPVIVVPAGFKNISNPPPSGSR 237
+G + D + NL GLP I VP G SN P G +
Sbjct: 398 VVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ---SNGRPIGLQ 454
Query: 238 RRTTITTGIYAPPKHDHIALALAIAYQSVTDHHKQRPPI 276
P + +A Y++ + H +
Sbjct: 455 --------FIGKPFDEKTLYRVAYQYETQYNLHDVYEKL 485
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 106 bits (266), Expect = 4e-26
Identities = 57/342 (16%), Positives = 96/342 (28%), Gaps = 86/342 (25%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKL---GPFCRSAAD 57
+ P A G++ AG++ P + CGV L+PT G + +++ S+++ G F RS D
Sbjct: 162 LSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRD 221
Query: 58 CTIVLDAIQGKDPDDLSSRDFP---FADPFSVDITKLTVGYL--------------EDAE 100
+LD + G P D +A S + L VG L A
Sbjct: 222 IAALLDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAA 281
Query: 101 MEVVQVLAEKGIKMVPFKLNYTVD----SVQGILNFTMDVDMLAHFDEW-QRSGKDDVYE 155
LA G + D + + E R +D E
Sbjct: 282 RGAAAALAALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVE 341
Query: 156 AQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESF---------------------- 193
++R+ +T + +V+ +
Sbjct: 342 WTSWE--MVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGEL 399
Query: 194 ----------IVDAFIGNVTDWEKVC-LGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTI 242
AFI N+ G P I +P G
Sbjct: 400 MLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGM----------------- 442
Query: 243 TTG--------IYAPPKHDHIALALAIAYQSVTDHHKQRPPI 276
+ I A + + L +A + +RP +
Sbjct: 443 -SSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQL 483
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 106 bits (266), Expect = 6e-26
Identities = 49/283 (17%), Positives = 83/283 (29%), Gaps = 58/283 (20%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISE----SLDKLGPFCRSAA 56
P +G++ GS+ +P A CG+ L+PT + ++G+ LGP R
Sbjct: 223 GSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 282
Query: 57 DCTIVLDAIQGKDPD--DLSSRDFPFADPFSVDITKLTVGYLED------------AEME 102
+ L A+ + D + PF + L VGY E A +E
Sbjct: 283 SLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIE 342
Query: 103 VVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHF-DEWQRSGKDDVYEAQDQ-- 159
Q L G ++PF N +++ + + D F ++ D
Sbjct: 343 TKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILIL 402
Query: 160 --------------------WPVELRRSRIITAVDYMQAQRARGKLIREVKESFI---VD 196
L R +A + Q + V + +D
Sbjct: 403 RLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLD 462
Query: 197 AFIGNVT--------------DWEKVCLGNLVGLPVIVVPAGF 225
+ + L N + P VVP
Sbjct: 463 VLLTPMLGPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTT 505
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 104 bits (263), Expect = 1e-25
Identities = 70/337 (20%), Positives = 138/337 (40%), Gaps = 82/337 (24%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
P ++GS+T GS+ P + CGV ++PT+G V R G+++ + SLD++G F R D +
Sbjct: 159 SAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVAL 218
Query: 61 VLDAIQGKDPDDLSSRDFP---FADPFSVDITKLTVG----YL--------EDAEMEVVQ 105
VL+ I G D D +S P +++ ++ L +G + ++A ++
Sbjct: 219 VLEVISGWDEKDSTSAKVPVPEWSEEVKKEVKGLKIGLPKEFFEYELQPQVKEAFENFIK 278
Query: 106 VLAEKGIKMVPFKLNYTVDSVQG--IL-------NFTMDVDMLAHFD-------EWQRSG 149
L ++G ++ L + S+ I+ N LA +D +
Sbjct: 279 ELEKEGFEIKEVSLPHVKYSIPTYYIIAPSEASSN-------LARYDGVRYGYRAKEYKD 331
Query: 150 KDDVYEA--QDQWPVELRRSRII--TAV------D--YMQAQRARGKLIREVKESF-IVD 196
++Y + + E++R RI+ T D Y++AQ+ R + + ++F VD
Sbjct: 332 IFEMYARTRDEGFGPEVKR-RIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVD 390
Query: 197 AFIG------------NVTDWEKVCLG-------NLVGLPVIVVPAGFKNISNPPPSGSR 237
+ + ++ L NL GLP I +P + + P G +
Sbjct: 391 VIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW---KDGLPVGGQ 447
Query: 238 RRTTITTGIYAPPKHDHIALALAIAYQSVTDHHKQRP 274
+ + L ++ ++ H+++ P
Sbjct: 448 --------LIGKHWDETTLLQISYLWEQKFKHYEKIP 476
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 103 bits (259), Expect = 3e-25
Identities = 48/273 (17%), Positives = 91/273 (33%), Gaps = 73/273 (26%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
+ ++G++T GS+ P GV +P++G V G + +S S D GP RS D
Sbjct: 159 IGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHF 218
Query: 61 VLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVG----YLED--------AEMEVVQVLA 108
+ + + G+ + G +LE A +++ L
Sbjct: 219 LTEILAGESIPL-------------EGVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLP 265
Query: 109 EKGIKMVPFKL----NYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVEL 164
++ L Y V + L ++ R + + E + + ++
Sbjct: 266 ALRAEVREVSLPLEGVYEVYTR------------LVRYEA-ARIHEKALKEHPEGFSPQV 312
Query: 165 RRSRII-----TAVDYMQAQRARGKLIREVKESFI-VDAFIG------------NVTDWE 206
R ++ T DY A R L E+ ++ VDA + + E
Sbjct: 313 RE-ALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELE 371
Query: 207 KVCLG------------NLVGLPVIVVPAGFKN 227
G +L+G+P + +P
Sbjct: 372 SGRKGHREAFITLTLPFSLLGVPTLALPFAKVE 404
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 102 bits (257), Expect = 8e-25
Identities = 65/347 (18%), Positives = 103/347 (29%), Gaps = 92/347 (26%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
V FAIG + GS+ P A CGV +PTFG V TG I ++D LGP R+ D +
Sbjct: 183 DVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAAL 242
Query: 61 VLDAIQGKDPDDLSSRDFPFADPFSVDITK----LTVGYL-------------EDAEMEV 103
+L I G+D +D D A + + L +G + +DA
Sbjct: 243 MLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAA 302
Query: 104 VQVLAEKGIKMVPFKLNYTVDSV----------------QGI-----LNFTMDVDMLAHF 142
L E G + + + + + G D +++AHF
Sbjct: 303 AHSLTEIGCTVEEVNIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHF 362
Query: 143 DEWQRSGKDDVYEAQDQWPVELRRSRIIT----------AVDYMQAQRARGKLIREVKES 192
+ D ++ +T A Y +A+ +
Sbjct: 363 ASRRIQHADA-------LSETVKL-VALTGHHGITTLGGAS-YGKARNLVPLARAAYDTA 413
Query: 193 F-IVDAFIG------------NVTDWEKVCLG-----------NLVGLPVIVVPAGFKNI 228
D + D ++ G P + VPAG
Sbjct: 414 LRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL--- 470
Query: 229 SNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSVTDHHKQRPP 275
N P G I D L + A++ +
Sbjct: 471 VNGLPVGMM--------ITGRHFDDATVLRVGRAFEKLRGAFPTPAE 509
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 3e-06
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 48/160 (30%)
Query: 40 SISESLDKLGPFC-RSAADCTIVLDAIQGKDPD-----DLS------SRDFPFADPFSVD 87
SI L +L + +C +VL +Q + +LS +R D S
Sbjct: 229 SIQAELRRL--LKSKPYENCLLVLLNVQ--NAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 88 ITK------LTVGYLEDAEMEV--------VQVLAEKGIKMVPFKLNYTVDSVQGILNFT 133
T ++ D + Q L + + P +L+ +S++
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR------ 338
Query: 134 MDVDMLAHFDEWQRSGKDDV-------YEAQDQWPVELRR 166
D LA +D W+ D + + P E R+
Sbjct: 339 ---DGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRK 373
Score = 44.1 bits (103), Expect = 4e-05
Identities = 45/318 (14%), Positives = 88/318 (27%), Gaps = 119/318 (37%)
Query: 38 VMSISESLDKLGPFCRSAADCTIVLDAIQG--KDPDDLSS------RDFPFADPFSVDIT 89
+ + ++L +L R A + +++D + G K + + I
Sbjct: 137 YLKLRQALLEL----RPAKN--VLIDGVLGSGK-----TWVALDVCLSYKVQCKMDFKIF 185
Query: 90 KLTVGYLEDAE--MEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQR 147
L + E +E++Q KL Y +D N+T D +
Sbjct: 186 WLNLKNCNSPETVLEMLQ------------KLLYQIDP-----NWTSRSDHSS------- 221
Query: 148 SGKDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLI-REVKESFIVDAF-IG----- 200
+ K ++ Q R++ + Y L+ V+ + +AF +
Sbjct: 222 NIKLRIHSIQA------ELRRLLKSKPY-----ENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 201 -----NVTDWEKVCLGNLVGLPVIVVPAGF----------KNISNPPPSGSRRRTTITTG 245
VTD + + + K + P R T
Sbjct: 271 TTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--- 325
Query: 246 IYAPPKHDHIALALAIAYQSVTDH----------------HKQRPPIDNLGPND------ 283
P L+I +S+ D ++ L P +
Sbjct: 326 --NP-------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 284 ---IIPDPPTVTIPPRIL 298
+ P + IP +L
Sbjct: 377 RLSVFPP--SAHIPTILL 392
Score = 28.3 bits (62), Expect = 3.8
Identities = 16/141 (11%), Positives = 37/141 (26%), Gaps = 30/141 (21%)
Query: 177 QAQRARGKLIREVKESFIVDAFIGNVTDWEKVCLGNLVGLPVIVVPAGFKNISNPPPSGS 236
+ Q ++ +++F+ + +V D K L +I + S
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK----------EEIDHIIMSKDAVS 62
Query: 237 RRRTTITT------GIYA-------PPKHDHIALALAIAYQSVTDHHK----QRPPIDNL 279
T + + + + + + + QR + N
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN- 121
Query: 280 GPNDIIPDPPTVTIPPRILHL 300
N + V+ L L
Sbjct: 122 -DNQVFA-KYNVSRLQPYLKL 140
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 4e-05
Identities = 39/203 (19%), Positives = 62/203 (30%), Gaps = 50/203 (24%)
Query: 43 ESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVG------YL 96
+SL L R A LD Q + P S R F++ F L V L
Sbjct: 384 QSLYGLNLTLRKAK-APSGLD--QSRIP--FSERKLKFSNRF------LPVASPFHSHLL 432
Query: 97 EDAEMEVVQVLAEKGIKMVPFKLNYTV-DSVQGILNFTMDVDMLAHFDEWQRSGKDDVYE 155
A + + L + + + V D+ G D+ R + E
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-------SDL--------RVLSGSISE 477
Query: 156 AQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFIVDAF-IGNVTDWEKVCLGNLV 214
+ I V + + K + I+D F G + + N
Sbjct: 478 -------RIVDCIIRLPVKWETTTQF--------KATHILD-FGPGGASGLGVLTHRNKD 521
Query: 215 GLPVIVVPAGFKNISNPPPSGSR 237
G V V+ AG +I+ G +
Sbjct: 522 GTGVRVIVAGTLDINPDDDYGFK 544
Score = 38.9 bits (90), Expect = 0.002
Identities = 38/281 (13%), Positives = 87/281 (30%), Gaps = 103/281 (36%)
Query: 41 ISESLDKLGPFCRSAADCTIV----LDAIQ-GKDPDDLSSRDFPFADPFSVDITKLT--V 93
I S + L R+ D V L+ ++ ++P + +D+ + P S + +
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 94 GYLEDAEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDM---LAHFDEWQRSGK 150
Y+ V A K + P +L ++G + + +A D W
Sbjct: 248 HYV---------VTA-KLLGFTPGELR---SYLKGATGHSQGLVTAVAIAETDSW----- 289
Query: 151 DDVYEAQDQWPVELRRSRIITAVDYM-----QAQRARGKLIREVKESFIVDAFIGNVTDW 205
+ + + + A+ + + A + S + D
Sbjct: 290 ESFFVS------------VRKAITVLFFIGVRCYEAYPNT--SLPPSILED--------- 326
Query: 206 EKVCLGNLVGLP--VIVVPAGFKNISNPPPSGSRRRTTITTGI-----YAPPKHDHIALA 258
L N G+P ++ + N++ + + + + P + ++
Sbjct: 327 ---SLENNEGVPSPMLSI----SNLT---------QEQVQDYVNKTNSHLPA-GKQVEIS 369
Query: 259 LAIAYQSVTDHHKQRPPIDNLGPNDIIPDPPTVTIPPRILH 299
L N G +++ V+ PP+ L+
Sbjct: 370 LV-----------------N-GAKNLV-----VSGPPQSLY 387
Score = 33.5 bits (76), Expect = 0.10
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 37/136 (27%)
Query: 24 TALRPTFGTVGRTGVMSISESLDKLGPFCR-SAADCTIVLDAIQGKDPDDLSSRDFPFAD 82
AL VMSI ++ + F R + D + + ++ A
Sbjct: 1768 AAL------ASLADVMSIESLVEVV--FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 83 PFSVD--------ITKLTVGYLE--------------------DAEMEVVQVLAEKGIKM 114
FS + + K T +E D V+ + + I +
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Query: 115 VPFKLNYTVDSVQGIL 130
+ + + +++ V+G L
Sbjct: 1880 IELQKSLSLEEVEGHL 1895
Score = 30.0 bits (67), Expect = 1.3
Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 83/218 (38%)
Query: 7 GSETAGSM------TYPGARCGV-----TALRPTFGTVGRTGVMSISESLDKLGPFCRSA 55
GS+ G M T A+ V + T+G SI +
Sbjct: 1625 GSQEQG-MGMDLYKTSKAAQD-VWNRADNHFKDTYG-------FSILD------------ 1663
Query: 56 ADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDI----TKLTVGYLEDAEMEVVQVLAEKG 111
IV++ +P +L+ F I + + + D +++ ++ E
Sbjct: 1664 ----IVIN-----NPVNLT---IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 112 IKMVPFKLNYTVDSVQGILN---------FTMDVDMLAHFDEWQRSG---KDDV------ 153
+YT S +G+L+ M+ A F++ + G D
Sbjct: 1712 EHS----TSYTFRSEKGLLSATQFTQPALTLMEK---AAFEDLKSKGLIPADATFAGHSL 1764
Query: 154 --YEAQDQWPVEL-RRSRIITAVDYMQAQRARGKLIRE 188
Y A L + +++ ++ RG ++
Sbjct: 1765 GEYAA-------LASLADVMSIESLVEVVFYRGMTMQV 1795
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl
acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A
{Arabidopsis thaliana}
Length = 581
Score = 28.0 bits (61), Expect = 4.3
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
Query: 82 DPFSVDITKLTVGYLEDAEMEVVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDV--DML 139
S++I K T L+ + + L+E+ I+++ F V + G ++ +
Sbjct: 433 LILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEISGETN 492
Query: 140 AHFDEWQRSGKDDVYEAQDQW---------PVELRRSRIITAVDYMQAQRARGKLIREVK 190
+ + D + +ELR T + G + K
Sbjct: 493 EDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFK 552
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix,
zinc-LESS finger, hydrolase, DNA DAMA repair,
DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis
thaliana} PDB: 3twm_A* 3twk_A
Length = 310
Score = 27.6 bits (62), Expect = 5.1
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 12/63 (19%)
Query: 231 PPPSGSRRRTTITTGIYAPPKHDHIALALA----IAYQ--------SVTDHHKQRPPIDN 278
+R+ + P K+ + L +++ + + PI
Sbjct: 86 GVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLANPTSVSPISE 145
Query: 279 LGP 281
LGP
Sbjct: 146 LGP 148
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial
ribosome, large ribosomal subunit, ribosomal R ribosome;
12.10A {Bos taurus} PDB: 3iy9_M
Length = 110
Score = 25.6 bits (57), Expect = 10.0
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 8/32 (25%)
Query: 110 KGIKMVPFKLNYTVDSVQG--------ILNFT 133
+ IK K+ Y ++G L F
Sbjct: 4 RQIKYSKDKMWYLAKLIRGMSIDQALAQLEFN 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.418
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,958,155
Number of extensions: 314268
Number of successful extensions: 699
Number of sequences better than 10.0: 1
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 36
Length of query: 300
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 207
Effective length of database: 4,105,140
Effective search space: 849763980
Effective search space used: 849763980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)