RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022256
(300 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 128 bits (321), Expect = 3e-34
Identities = 75/331 (22%), Positives = 122/331 (36%), Gaps = 66/331 (19%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
+VP ++GS+T GS+ P A CGV ++PT+G V R G+++ + SLD++GP R+ D I
Sbjct: 166 LVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAI 225
Query: 61 VLDAIQGKDPDDLSSRDFP---FADPFSVDITKLTVGYLED------------AEMEVVQ 105
VL+AI G D +D +S F DI L V ++ A V+
Sbjct: 226 VLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVE 285
Query: 106 VLAEKGIKMVPFKLNYTVDSVQG--ILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVE 163
L G + L T + ++ + L+ FD + + ++
Sbjct: 286 TLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKM 345
Query: 164 LR--------RSRII-----TAVDYMQAQRARGKLIREVKESFI------VDAFIGNVTD 204
R + RI + Y A + + +R + ++ D +G
Sbjct: 346 SRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAP 405
Query: 205 WEKVCLG-------------------NLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTG 245
LG NL GLP I VP G SN P G +
Sbjct: 406 TTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ---SNGRPIG------LQ-- 454
Query: 246 IYAPPKHDHIALALAIAYQSVTDHHKQRPPI 276
P + +A Y++ + H +
Sbjct: 455 FIGKPFDEKTLYRVAYQYETQYNLHDVYEKL 485
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 100 bits (250), Expect = 1e-24
Identities = 65/327 (19%), Positives = 122/327 (37%), Gaps = 63/327 (19%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
MV A+GS+T GS+ P + CGV +PT+G V R G+++ + SLD++GP ++ D I
Sbjct: 153 MVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAI 212
Query: 61 VLDAIQGKDPDDLSSRDF--PFADPFSVDITKLTVGYLEDAEM------------EVVQV 106
+++ I G+D +D ++ + F ++ + E+ E +++
Sbjct: 213 LMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKL 272
Query: 107 LAEKGIKMVPFKL---------NYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQ 157
L G K+ K+ Y + + N + ++ ++ + +
Sbjct: 273 LERLGAKVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTR 332
Query: 158 DQWPVELRRSRII-----TAVDYMQAQRARGKLIREVKESFIVDAF-------------- 198
+ E R RI+ + Y +A + +R + +
Sbjct: 333 NVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVT 392
Query: 199 ---IGNVTDWEK-------VCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYA 248
IG + D NL GLP I VP GF SN P G + +
Sbjct: 393 AFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF---SNNLPVG------VQ--VIG 441
Query: 249 PPKHDHIALALAIAYQSVTDHHKQRPP 275
D +A A + + +++
Sbjct: 442 RRFADGKVFRIARAIEKNSPYNENGMF 468
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 51.7 bits (122), Expect = 5e-08
Identities = 57/280 (20%), Positives = 91/280 (32%), Gaps = 27/280 (9%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
M+P A+G++T GS+ P A CG A++P+F + GV S +LD +G F A D
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 61 VLDAIQGKDPDDLSSRDFPFADPFSVDITKLTVGYLEDAEMEVVQVLAEKGIKMVPFKLN 120
L A+ G+ V + ++ AE+ V
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 121 YTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQWPVELRRSRIITAVDYMQAQR 180
++ + W+ S D + ++ D +
Sbjct: 263 PEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIG 322
Query: 181 ARGKLIREVKESFI-VDAFI-------------GNVTDWEKVCLGNLVGLPVIVVPAGFK 226
RG+ RE+ E F VD + + D L L+G P + VP
Sbjct: 323 RRGR--RELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKV 380
Query: 227 NISNPPPSGSRRRTTITTGIYAPPKHDHIALALAIAYQSV 266
P I + A +D ALA A +
Sbjct: 381 G--GLP---------IGVQVIARFGNDAHALATAWFLEDA 409
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 50.1 bits (118), Expect = 2e-07
Identities = 61/327 (18%), Positives = 103/327 (31%), Gaps = 65/327 (19%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSAADCTI 60
+ AIG+ET GS+ P A GV L+PT G V R G++ IS S D GP RS AD
Sbjct: 173 LASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAA 232
Query: 61 VLDAIQGKDPD-----------------DLSSRDFPFADPFSVDITKLTVGYLEDAEMEV 103
VL AI G+D L + + L + +
Sbjct: 233 VLTAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQA 292
Query: 104 VQVLAEKGIKMVPFK---LNYTVDSVQGILNFTMDVDMLAHFDEWQRSGKD--------- 151
L G +VP + ++ + +L + + +F+ + +
Sbjct: 293 ATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQ 352
Query: 152 -------DVYEAQDQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFI---VDAFI-- 199
++ + + A ++ R + + +DA +
Sbjct: 353 AHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAP 412
Query: 200 -----------GNVTDWEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTITTGIYA 248
G+ E + G P + VP G + P +
Sbjct: 413 TTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQID--GLP---------VGLLFMG 461
Query: 249 PPKHDHIALALAIAYQSVTDHHKQRPP 275
+ + +A AY+ T RPP
Sbjct: 462 TAWSEPKLIEMAYAYEQRTRAR--RPP 486
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 48.9 bits (115), Expect = 3e-07
Identities = 52/343 (15%), Positives = 93/343 (27%), Gaps = 77/343 (22%)
Query: 1 MVPFAIGSETAGSMTYPGARCGVTALRPTFGTVGRTGVMSI----SESLDKLGPFCRSAA 56
P +G++ GS+ +P A CG+ L+PT + ++G+ + LGP R
Sbjct: 193 GSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 252
Query: 57 DCTIVLDAIQGKDPDDLSSRDFP--FADPFSVDITKLTVGYLED------------AEME 102
+ L A+ + L P F + L VGY E A +E
Sbjct: 253 SLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIE 312
Query: 103 VVQVLAEKGIKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQ----- 157
Q L G ++PF N +++ + + D F + + D
Sbjct: 313 TKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILIL 372
Query: 158 ------------------DQWPVELRRSRIITAVDYMQAQRARGKLIREVKESFI---VD 196
+ L R +A + Q + V + +D
Sbjct: 373 RLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLD 432
Query: 197 AFIGNVT--------------DWEKVCLGNLVGLPVIVVPAGFKNISNPPPSGSRRRTTI 242
+ + L N + P VVP + +
Sbjct: 433 VLLTPMLGPALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFG 492
Query: 243 TTG-------------------IYAPPKHDHIALALAIAYQSV 266
A P + + L + +
Sbjct: 493 DIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL 535
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus,
subsp. Thermus thermophilus [TaxId: 271]}
Length = 110
Score = 28.3 bits (63), Expect = 0.43
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 17/95 (17%)
Query: 101 MEVVQVLAEKGIKMVPFKLNYTVDSVQG--------ILNFTMD---VDMLAHFDEWQRSG 149
ME + + +++ P K+ VD ++G IL +T + S
Sbjct: 1 MEAKAIA--RYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVL----ESA 54
Query: 150 KDDVYEAQDQWPVELRRSRIITAVDYMQAQRARGK 184
+ D L RARG+
Sbjct: 55 AANAVNNHDALEDRLYVKAAYVDEGPAVLPRARGR 89
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 94
Score = 27.1 bits (60), Expect = 0.97
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 122 TVDSVQGILNFTMDVDMLAHFDEWQRSGKDDVYEAQDQW 160
V S+ +L+ + W SG + Q +W
Sbjct: 20 NVTSIHSLLD-EGKQSLTKLAAAWGGSGSEAYQGVQQKW 57
>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus
subtilis [TaxId: 1423]}
Length = 110
Score = 27.0 bits (60), Expect = 1.3
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 142 FDEWQRSGKDDVYEAQDQWPVELRR--SRIITAVDYMQAQRARGKLIREV 189
+ Q +G++ E Q + + M+A++ LI E+
Sbjct: 50 LQQKQMAGEEITQEEVTQA-QKTVALVQQHEKISQLMEAEQRMSMLIGEL 98
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus
halodurans [TaxId: 86665]}
Length = 118
Score = 24.8 bits (54), Expect = 8.4
Identities = 7/52 (13%), Positives = 11/52 (21%)
Query: 39 MSISESLDKLGPFCRSAADCTIVLDAIQGKDPDDLSSRDFPFADPFSVDITK 90
I L++LG + DL D +
Sbjct: 16 TLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLD 67
>d2dfba1 b.29.1.11 (A:1-190) Xylanase II {Trichoderma reesei, xynII
[TaxId: 51453]}
Length = 190
Score = 25.0 bits (55), Expect = 9.5
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 136 VDMLAHFDEWQRSG 149
V+ HF+ W + G
Sbjct: 150 VNTANHFNAWAQQG 163
>d1h4ga_ b.29.1.11 (A:) Xylanase II {Bacillus agaradhaerens [TaxId:
76935]}
Length = 206
Score = 25.1 bits (55), Expect = 9.6
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 136 VDMLAHFDEWQRSG 149
+ + HF W+ G
Sbjct: 157 ISVSNHFRAWENLG 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.418
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,176,744
Number of extensions: 56025
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 16
Length of query: 300
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,240,546
Effective search space: 266717390
Effective search space used: 266717390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)