BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022260
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VXL|A Chain A, Screening A Limited Structure-Based Library Identifies
Udp- Galnac-Specific Mutants Of Alpha-1,3
Galactosyltransferase
Length = 277
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 69 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 121
>pdb|1G8O|A Chain A, Crystallographic Structure Of The Native Bovine Alpha-1,3-
Galactosyltransferase Catalytic Domain
pdb|1G93|A Chain A, Crystal Structure Of The Bovine Catalytic Domain Of
Alpha-1, 3-Galactosyltransferase In The Presence Of
Udp-Galactose
Length = 310
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 92 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 144
>pdb|2VS5|A Chain A, The Binding Of Udp-Galactose By An Active Site Mutant Of
Alpha-1,3 Galactosyltransferase (Alpha3gt)
pdb|2VS5|B Chain B, The Binding Of Udp-Galactose By An Active Site Mutant Of
Alpha-1,3 Galactosyltransferase (Alpha3gt)
Length = 286
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 71 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 123
>pdb|2JCJ|A Chain A, Crystal Structure Of Alpha-1,3 Galactosyltransferase (C-
Terminus Truncated Mutant-C3) In Complex With Udp Nd
Tris
Length = 286
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 71 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 123
>pdb|1O7O|A Chain A, Roles Of Individual Residues Of Alpha-1,3
Galactosyltransferases In Substrate Binding And
Catalysis
pdb|1O7O|B Chain B, Roles Of Individual Residues Of Alpha-1,3
Galactosyltransferases In Substrate Binding And
Catalysis
Length = 289
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 71 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 123
>pdb|2WGZ|A Chain A, Crystal Structure Of Alpha-1,3 Galactosyltransferase (
Alpha3gt) In A Complex With
P-Nitrophenyl-Beta-Galactoside (Pnp-Beta-Gal)
pdb|2WGZ|B Chain B, Crystal Structure Of Alpha-1,3 Galactosyltransferase (
Alpha3gt) In A Complex With
P-Nitrophenyl-Beta-Galactoside (Pnp-Beta-Gal)
Length = 290
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 71 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 123
>pdb|2VS4|A Chain A, The Binding Of Udp-Galactose By An Active Site Mutant Of
Alpha-1,3 Galactosyltransferase (Alpha3gt)
pdb|2VS4|B Chain B, The Binding Of Udp-Galactose By An Active Site Mutant Of
Alpha-1,3 Galactosyltransferase (Alpha3gt)
Length = 289
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 71 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 123
>pdb|1K4V|A Chain A, 1.53 A Crystal Structure Of The
Beta-galactoside-alpha-1,3- Galactosyltransferase In
Complex With Udp
pdb|1K4V|B Chain B, 1.53 A Crystal Structure Of The
Beta-galactoside-alpha-1,3- Galactosyltransferase In
Complex With Udp
pdb|1GWV|A Chain A, Alpha-,1,3 Galactosyltransferase - Lactose Complex
pdb|1GWV|B Chain B, Alpha-,1,3 Galactosyltransferase - Lactose Complex
pdb|1GWW|A Chain A, Alpha-,1,3 Galactosyltransferase- Alpha-D-Glucose Complex
pdb|1GWW|B Chain B, Alpha-,1,3 Galactosyltransferase- Alpha-D-Glucose Complex
pdb|1GX0|A Chain A, Alpha-,1,3 Galactosyltransferase - Beta-D-Galactose
Complex
pdb|1GX0|B Chain B, Alpha-,1,3 Galactosyltransferase - Beta-D-Galactose
Complex
pdb|1GX4|A Chain A, Alpha-,1,3 Galactosyltransferase - N-Acetyl Lactosamine
Complex
pdb|1GX4|B Chain B, Alpha-,1,3 Galactosyltransferase - N-Acetyl Lactosamine
Complex
pdb|1O7Q|A Chain A, Roles Of Individual Residues Of Alpha-1,3
Galactosyltransferases In Substrate Binding And
Catalysis
pdb|1O7Q|B Chain B, Roles Of Individual Residues Of Alpha-1,3
Galactosyltransferases In Substrate Binding And
Catalysis
pdb|2JCO|A Chain A, Crystal Structure Of Wild Type Alpha-1,3
Galactosyltransferase In The Absence Of Ligands
Length = 289
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 71 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 123
>pdb|1VZT|A Chain A, Roles Of Individual Residues Of Alpha-1,3
Galactosyltransferases In Substrate Binding And
Catalysis
pdb|1VZT|B Chain B, Roles Of Individual Residues Of Alpha-1,3
Galactosyltransferases In Substrate Binding And
Catalysis
Length = 289
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 71 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 123
>pdb|2VXM|A Chain A, Screening A Limited Structure-Based Library Identifies
Udp- Galnac-Specific Mutants Of Alpha-1,3
Galactosyltransferase
pdb|2VXM|B Chain B, Screening A Limited Structure-Based Library Identifies
Udp- Galnac-Specific Mutants Of Alpha-1,3
Galactosyltransferase
pdb|2VXM|C Chain C, Screening A Limited Structure-Based Library Identifies
Udp- Galnac-Specific Mutants Of Alpha-1,3
Galactosyltransferase
pdb|2VXM|D Chain D, Screening A Limited Structure-Based Library Identifies
Udp- Galnac-Specific Mutants Of Alpha-1,3
Galactosyltransferase
Length = 273
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 69 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 121
>pdb|2VS3|A Chain A, The Binding Of Udp-Galactose By An Active Site Mutant Of
Alpha-1,3 Galactosyltransferase (Alpha3gt)
pdb|2VS3|B Chain B, The Binding Of Udp-Galactose By An Active Site Mutant Of
Alpha-1,3 Galactosyltransferase (Alpha3gt)
Length = 289
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 71 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 123
>pdb|2JCK|A Chain A, Crystal Structure Of Alpha-1,3 Galactosyltransferase
(R365k) In Complex With Udp And 2 Manganese Ion
pdb|2JCL|A Chain A, Crystal Structure Of Alpha-1,3 Galactosyltransferase
(R365k) In The Absence Of Ligands
pdb|2JCL|B Chain B, Crystal Structure Of Alpha-1,3 Galactosyltransferase
(R365k) In The Absence Of Ligands
pdb|2VFZ|A Chain A, Crystal Structure Of Alpha-1,3 Galactosyltransferase
(r365k) In Complex With Udp-2f-galactose
pdb|2VFZ|B Chain B, Crystal Structure Of Alpha-1,3 Galactosyltransferase
(r365k) In Complex With Udp-2f-galactose
Length = 289
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 71 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 123
>pdb|1VZU|A Chain A, Roles Of Active Site Tryptophans In Substrate Binding And
Catalysis By Alpha-1,3 Galactosyltransferase
pdb|1VZU|B Chain B, Roles Of Active Site Tryptophans In Substrate Binding And
Catalysis By Alpha-1,3 Galactosyltransferase
pdb|1VZX|A Chain A, Roles Of Active Site Tryptophans In Substrate Binding And
Catalysis By Alpha-1,3 Galactosyltransferase
pdb|1VZX|B Chain B, Roles Of Active Site Tryptophans In Substrate Binding And
Catalysis By Alpha-1,3 Galactosyltransferase
Length = 289
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSEMVR 85
SANK +F+ H ++F +V V+ +P + + LR SF +KI+P+ R M+R
Sbjct: 71 SANK--HFMVGHPVIFYIMVDDVSRMPLIELGPLR--SFKVFKIKPEKRWQDISMMR 123
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 59 IESLRSDSFDKYKIQPKVRLSFSEMVRCYKDVMRMFFLVVGPLQLVSFPS 108
IE LR K K +P+ +F E++ C K V + + +G L+ ++ P
Sbjct: 16 IEELREKVVSKNKNEPEFLQAFEEVLSCLKPVFKKDNVYIGVLENIAEPE 65
>pdb|1FG5|N Chain N, Crystal Structure Of Bovine
Alpha-1,3-Galactosyltransferase Catalytic Domain
Length = 310
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 29 SANKSDYFLYCHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVR 77
SANK +F H ++F V V+ P + + LR SF +KI+P+ R
Sbjct: 92 SANK--HFXVGHPVIFYIXVDDVSRXPLIELGPLR--SFKVFKIKPEKR 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,238,526
Number of Sequences: 62578
Number of extensions: 375283
Number of successful extensions: 950
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 17
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)