Query 022260
Match_columns 300
No_of_seqs 240 out of 1357
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0873 C-4 sterol methyl oxid 100.0 1E-59 2.2E-64 425.7 18.1 274 13-289 3-280 (283)
2 COG3000 ERG3 Sterol desaturase 100.0 5.3E-33 1.1E-37 256.6 18.6 149 122-272 91-240 (271)
3 KOG0874 Sphingolipid hydroxyla 100.0 6.3E-36 1.4E-40 260.0 -1.7 243 39-285 15-282 (287)
4 PLN02869 fatty aldehyde decarb 100.0 3.6E-29 7.9E-34 247.0 14.1 152 124-281 125-286 (620)
5 KOG0872 Sterol C5 desaturase [ 100.0 1.6E-28 3.5E-33 220.0 15.5 166 120-293 122-296 (312)
6 PF04116 FA_hydroxylase: Fatty 99.8 1.5E-19 3.2E-24 144.5 8.1 110 131-243 2-114 (114)
7 PLN02434 fatty acid hydroxylas 99.4 7.5E-12 1.6E-16 112.9 12.2 135 125-269 82-230 (237)
8 KOG0539 Sphingolipid fatty aci 98.5 2.8E-07 6E-12 80.9 8.0 135 126-270 83-234 (240)
9 PLN02601 beta-carotene hydroxy 98.3 9.7E-06 2.1E-10 73.8 12.8 118 129-256 139-271 (303)
10 PRK07424 bifunctional sterol d 97.6 0.00019 4E-09 70.3 8.4 130 134-268 16-175 (406)
11 PF10520 Kua-UEV1_localn: Kua- 94.1 0.12 2.6E-06 45.1 5.8 66 210-277 100-167 (178)
12 cd03514 CrtR_beta-carotene-hyd 85.6 11 0.00024 33.4 10.5 14 153-166 74-87 (207)
13 cd03506 Delta6-FADS-like The D 68.1 64 0.0014 28.1 10.1 39 249-288 155-204 (204)
14 cd03510 Rhizobitoxine-FADS-lik 65.9 30 0.00066 29.7 7.4 15 152-166 71-85 (175)
15 KOG3011 Ubiquitin-conjugating 55.3 24 0.00051 32.5 4.9 137 123-266 106-263 (293)
16 PLN02434 fatty acid hydroxylas 48.7 29 0.00063 31.7 4.5 43 124-166 164-209 (237)
17 COG3239 DesA Fatty acid desatu 33.5 83 0.0018 30.1 5.3 33 232-264 265-297 (343)
18 cd03505 Delta9-FADS-like The D 31.4 3.5E+02 0.0075 23.5 8.4 37 119-166 33-69 (178)
19 PF00487 FA_desaturase: Fatty 29.8 89 0.0019 26.8 4.5 37 233-289 216-252 (257)
20 KOG3364 Membrane protein invol 25.3 38 0.00082 28.5 1.2 43 249-291 84-126 (149)
21 PRK10062 hypothetical protein; 24.1 2.5E+02 0.0053 26.6 6.4 57 82-150 57-113 (303)
22 PF11712 Vma12: Endoplasmic re 23.8 4.1E+02 0.0089 21.8 8.0 15 130-144 119-133 (142)
23 PF05661 DUF808: Protein of un 23.6 2.5E+02 0.0053 26.5 6.3 58 82-151 57-114 (295)
24 KOG1600 Fatty acid desaturase 22.8 1.4E+02 0.003 28.5 4.6 37 119-166 97-133 (321)
25 KOG1600 Fatty acid desaturase 21.7 43 0.00094 31.8 1.0 37 235-271 122-162 (321)
26 COG4860 Uncharacterized protei 21.1 47 0.001 28.0 1.0 47 239-286 80-127 (170)
27 cd03511 Rhizopine-oxygenase-li 20.3 3.5E+02 0.0076 24.7 6.8 14 153-166 94-107 (285)
28 PF02037 SAP: SAP domain; Int 20.2 63 0.0014 20.1 1.2 23 275-297 5-27 (35)
No 1
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=1e-59 Score=425.68 Aligned_cols=274 Identities=48% Similarity=0.855 Sum_probs=255.2
Q ss_pred HhcCCchHHHHHHHHhhhcCC-CchHHH-HH-HHHHHHHHHhhhhHHHHHHhhc-CCcccccccCCCCCCCHHHHHHHHH
Q 022260 13 ALGRNLTFAETLWYNYSANKS-DYFLYC-HN-ILFLFLVFSVAPLPFVVIESLR-SDSFDKYKIQPKVRLSFSEMVRCYK 88 (300)
Q Consensus 13 ~~~~~~~~~~~~W~~~~~~~~-~~~l~~-~~-~~~~~~~y~~~~l~f~~ld~~~-p~~~~~~Kiq~~~~~~~~~~~~~~~ 88 (300)
|..+..+|+|++|..+.++++ +.++.. ++ +++..++||+.+++|+++|... |++++|||||++++++++++++|++
T Consensus 3 ~~~p~~nflq~~W~~l~~~f~~d~~l~~~~~~~~~~~~~y~l~~lpf~~iD~t~~~~~~~rYKIQp~k~~s~~~~~kc~k 82 (283)
T KOG0873|consen 3 ALHPLQNFLQPLWDYLYNTFSGDFLLLCVGGPFIVHELVYWLFCLPFIFIDVTNRPPFLRRYKIQPKKNPSLSKQLKCLK 82 (283)
T ss_pred CcchhHHHHHHHHHHHHhhCCCceEEEeechhHHHHHHHHHHhcchheEeecccCcchhhhhccCCCCCCCHHHHHHHHH
Confidence 345667799999999999887 666664 44 4555588999999999999985 9999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHhhhhhhccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhccCCCCCCC
Q 022260 89 DVMRMFFLVVGPLQLVSFPSVQMVGIRTGLPLPSGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPI 168 (300)
Q Consensus 89 ~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p~ 168 (300)
+++.|++++..|++.+.++..++.|++.+.|+|++.+++.|+++++++.|+++||.||++|++++||.+||+||++++|.
T Consensus 83 ~vl~n~~~v~~p~~~~~y~~~~~~~~~~~~plPt~~~~l~~l~i~~liEd~~fY~~HRL~H~~~~Yk~iHKvHHe~taPf 162 (283)
T KOG0873|consen 83 VVLLNHFLVVLPLTLVSYPFVEWFGLPSGAPLPSWKEMLAQLVVFFLIEDIGFYWSHRLFHHKWLYKYIHKVHHEYTAPF 162 (283)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHHhCCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhhhcccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCChHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhhhhCCcCCCCcccccccccCHHHHhhhhcCCCCC
Q 022260 169 GFAAPYAHWAEILILGIPSFLGPAMAPGHMITFWLWIALRQIEAIDTHSGYDFPWGFTKYIPFYGGADYHDYHHYVGEQS 248 (300)
Q Consensus 169 ~~~a~~~hp~E~ll~~~~~~l~~~l~~~h~~~~~~~~~~~~~~~~~~Hsgy~~p~~~~~~~~~~~~~~~H~~HH~~~~~~ 248 (300)
+.++.|+||+|.++.+++.+.+++++++|+.+.++|++++++.++..||||++||.+.+++||.+++++||+||.. +
T Consensus 163 ~~sa~YaHp~E~~~lg~~~~~~p~~~~~H~~t~wiw~~l~i~~t~~~HsGY~fPwsl~~~~pfy~ga~~HD~HH~~---f 239 (283)
T KOG0873|consen 163 GLSAEYAHPLEHLFLGLGTVMGPALLCGHVITLWIWIALRILETVESHSGYDFPWSLSKLIPFYGGAEHHDYHHLV---F 239 (283)
T ss_pred hHhhhhcCHHHHHHcCChhhhhhHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCccccccCcccCCCcccchhhhh---c
Confidence 9999999999999999888888888888999999999999999999999999999999999999999999999995 5
Q ss_pred CcccCCCchhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCC
Q 022260 249 HSNFASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQ 289 (300)
Q Consensus 249 ~~NYG~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~~~~~ 289 (300)
.+||...|+.|||++||++.+++.++..|++++..+|..-+
T Consensus 240 ~~n~~~~f~~~D~i~GTd~~~~~~k~~~~~~~~~~~~~~~~ 280 (283)
T KOG0873|consen 240 IGNFASVFGYLDRIHGTDSTYRALKELKEAIKKKSEKPIKE 280 (283)
T ss_pred cccccchhHHHHHHhccCccHhhhhhHHHHHHHhccCchhh
Confidence 89999999999999999999999999999999999887544
No 2
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=100.00 E-value=5.3e-33 Score=256.59 Aligned_cols=149 Identities=25% Similarity=0.301 Sum_probs=132.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhccCCCCCCCccccccCChHHHHHHHHHHHHHhhhcchhHHHH
Q 022260 122 SGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPIGFAAPYAHWAEILILGIPSFLGPAMAPGHMITF 201 (300)
Q Consensus 122 ~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~~~~l~~~l~~~h~~~~ 201 (300)
.....++++++++++.|+++||.||+.|..++||++|++||+...|+++++.+.||+|.++......+++.+++.++.++
T Consensus 91 ~~~~~~l~~~~~~~~~D~~~Y~~HR~~H~~~~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~l~~~~~~~~ 170 (271)
T COG3000 91 GPLPFALQLLLAFLFLDLGYYWAHRLLHRVPLLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLLGLSPVAV 170 (271)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999877777788889999999
Q ss_pred HHHHHHHHHHHHhhhhCCcCCCCccccc-ccccCHHHHhhhhcCCCCCCcccCCCchhhhhhcCCCcccHHH
Q 022260 202 WLWIALRQIEAIDTHSGYDFPWGFTKYI-PFYGGADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGYRYQ 272 (300)
Q Consensus 202 ~~~~~~~~~~~~~~Hsgy~~p~~~~~~~-~~~~~~~~H~~HH~~~~~~~~NYG~~~~~wD~lfGT~~~~~~~ 272 (300)
.++.++..+.++++|||++.| .+.+.+ .++++|++|++||++++ .++|||..+++|||+|||+..+.+.
T Consensus 171 ~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~v~~~p~~H~lHH~~~~-~~~Nyg~~~~~WDrlFGT~~~~~~~ 240 (271)
T COG3000 171 ALLFIFLLFWAVLIHSNLDLP-LPLGWLRYVFNTPRHHRLHHSKDP-YDKNYGVTLTFWDRLFGTYHPPDER 240 (271)
T ss_pred HHHHHHHHHHHHHHhcCcccc-CCcccceeeecCchHHHHhccCCC-CCCcchhhhHHHHHHcccCCCCccc
Confidence 999999999999999999987 443332 35789999999999764 4699999999999999999876554
No 3
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-36 Score=259.96 Aligned_cols=243 Identities=28% Similarity=0.409 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhcCCcccccccCCCCCCCHHH---HHHHHHHHHHHHHHHHh-hhhhhH---H-----
Q 022260 39 CHNILFLFLVFSVAPLPFVVIESLRSDSFDKYKIQPKVRLSFSE---MVRCYKDVMRMFFLVVG-PLQLVS---F----- 106 (300)
Q Consensus 39 ~~~~~~~~~~y~~~~l~f~~ld~~~p~~~~~~Kiq~~~~~~~~~---~~~~~~~~~~~~l~~~~-~~~~~~---~----- 106 (300)
.+++.+..++||+.++.|...+.+ +.++||||.|+..+..+. ....++.++..+++..+ .+++.. .
T Consensus 15 ~l~lvaPvvvYWv~Sg~f~~yi~l--~~~ekYRiHp~ee~a~rN~vskmaVvk~VllQq~~q~iVgiil~~feg~~~~~~ 92 (287)
T KOG0874|consen 15 VLGLVAPVVVYWVYSGIFHVYITL--HSLEKYRIHPKEEEAERNLVSKMAVVKGVLLQQIIQAIVGIILFHFEGSDATAD 92 (287)
T ss_pred HhhhhhHHHHHhhhcCCceEEEEe--chhhhhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHHHhheEEeeCCCCChH
Confidence 344566668899999988777665 778999999976543211 12234444444443321 111110 0
Q ss_pred hhhhhhccccCCC--CC--------cHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhhhhhccCCCCCCCccccccC
Q 022260 107 PSVQMVGIRTGLP--LP--------SGWEILAQLVVYFMVEDYTNYWIHRFLH-CKWGYEKIHRVHHEYTAPIGFAAPYA 175 (300)
Q Consensus 107 ~~~~~~g~~~~~~--~p--------~~~~~~~~~~~~~l~~D~~~Y~~HRl~H-~~~ly~~~H~~HH~~~~p~~~~a~~~ 175 (300)
..-++..++.++| +| +..-.+.|++.++++.|.|+|.+||.|| ++.+|+.+|++||+...|++..|.|.
T Consensus 93 ea~qm~k~~a~~~r~ip~~a~~~~y~~~v~A~q~f~aflviDtWQYF~HRymH~NK~LYk~iHs~HHrL~VPYayGALyN 172 (287)
T KOG0874|consen 93 EAQQMWKLRADLPRIIPDAAIYYGYSFLVLARQFFAAFLVIDTWQYFLHRYMHMNKFLYKHIHSQHHRLIVPYAYGALYN 172 (287)
T ss_pred HHHHHHHhhccccccCCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhceeEecchhhhhhhc
Confidence 0111122222222 22 2344678999999999999999999999 78999999999999999999999999
Q ss_pred ChHHHHHHH-HHHHHHhhhcchhHHHHHHHHHHHHHHHHhhhhCCcCCCCcccccccccCHHHHhhhhcCCCCCCcccC-
Q 022260 176 HWAEILILG-IPSFLGPAMAPGHMITFWLWIALRQIEAIDTHSGYDFPWGFTKYIPFYGGADYHDYHHYVGEQSHSNFA- 253 (300)
Q Consensus 176 hp~E~ll~~-~~~~l~~~l~~~h~~~~~~~~~~~~~~~~~~Hsgy~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~~NYG- 253 (300)
||+|+++.. +..-+...+.|.++-+.++++++.++.++.+||||-+|.+|...+ |-+++++||+||+..+ .+.||+
T Consensus 173 hP~EGllLDT~G~gla~l~sglspr~aiifFtfaTiKTVDDHCGy~lP~dpfqm~-F~NNa~YHDiHHQ~yG-~k~NFsQ 250 (287)
T KOG0874|consen 173 HPVEGLLLDTIGGGLAFLLSGLSPRTAIIFFTFATIKTVDDHCGYWLPGDPFQMF-FPNNAAYHDIHHQLYG-TKYNFSQ 250 (287)
T ss_pred CcchhhhhhhhchHHHHHHcCCCccceEEEEEeeeeeeeccccccccCCCceeEe-ccCCchhhhhhhhhhc-cccccCC
Confidence 999999973 333333345677778888888999999999999999999887754 5688999999999764 688997
Q ss_pred CCchhhhhhcCCCcccHHHHHHHHHHHHHHhc
Q 022260 254 SVFTYCDFLYGTDKGYRYQKKLLRKMQEELRG 285 (300)
Q Consensus 254 ~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~ 285 (300)
++|++||+++||+.++..+++..++-|.++-|
T Consensus 251 PFFtfWD~ilgTYmp~~~E~~~ekk~k~kn~K 282 (287)
T KOG0874|consen 251 PFFTFWDRILGTYMPYSLEKRLEKKFKAKNFK 282 (287)
T ss_pred cHHHHHHHHHhhcCCchhccccccccccccch
Confidence 78999999999999988777766655544433
No 4
>PLN02869 fatty aldehyde decarbonylase
Probab=99.96 E-value=3.6e-29 Score=246.98 Aligned_cols=152 Identities=21% Similarity=0.357 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhccCCCCCCCccccccCChH-HHHHHH----HHHHHHhhhcchhH
Q 022260 124 WEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPIGFAAPYAHWA-EILILG----IPSFLGPAMAPGHM 198 (300)
Q Consensus 124 ~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p~~~~a~~~hp~-E~ll~~----~~~~l~~~l~~~h~ 198 (300)
..++..+++.+...|+++||+||++|++++||++|++||++..|.++++. .||+ |.+... +|+++..+..+.|+
T Consensus 125 ~g~l~~~Llhv~~~Df~fYW~HRllH~~~LYwr~HkvHHss~~~~P~Ts~-~HP~~E~L~y~ll~~IPLllli~~g~~hi 203 (620)
T PLN02869 125 DGVLITILLHMGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSV-IHPFAEHIAYFLLFAIPLLTTIFTGTASI 203 (620)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCCCCCCchhhh-cCcHHHHHHHHHHHHHHHHHHhhcccchH
Confidence 35677888888899999999999999999999999999999999999886 7886 544432 34333222234688
Q ss_pred HHHHHHHHHHHHHHHhhhhCCcC-CCCcccccc----cccCHHHHhhhhcCCCCCCcccCCCchhhhhhcCCCcccHHHH
Q 022260 199 ITFWLWIALRQIEAIDTHSGYDF-PWGFTKYIP----FYGGADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGYRYQK 273 (300)
Q Consensus 199 ~~~~~~~~~~~~~~~~~Hsgy~~-p~~~~~~~~----~~~~~~~H~~HH~~~~~~~~NYG~~~~~wD~lfGT~~~~~~~~ 273 (300)
.++++++++..+.++++|||+++ |+.+.+..| +++||++|++||+ ++++|||.+|++|||+|||+.+ +++
T Consensus 204 ~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLkyll~TPsfHdlHHs---~fd~NYGlfF~~WDrLFGT~d~--~s~ 278 (620)
T PLN02869 204 AAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLMYTPSYHSLHHT---QFRTNYSLFMPIYDYIYGTMDK--SSD 278 (620)
T ss_pred HHHHHHHHHHHHHhcccccCccccccchhccCCcchheecCchHHhHHhc---cCCcCcccchHHHHhccCCCCC--Cch
Confidence 88899999999999999999996 664433222 3689999999999 4689999999999999999964 444
Q ss_pred HHHHHHHH
Q 022260 274 KLLRKMQE 281 (300)
Q Consensus 274 ~~~~~~~~ 281 (300)
+..|++.+
T Consensus 279 ~l~e~~~~ 286 (620)
T PLN02869 279 TLYEKSLK 286 (620)
T ss_pred hHHHHhhc
Confidence 45555444
No 5
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=219.95 Aligned_cols=166 Identities=23% Similarity=0.370 Sum_probs=143.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhccCCCCCCCccccccCChHHHHHHHHHHHHHhhhcchhHH
Q 022260 120 LPSGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPIGFAAPYAHWAEILILGIPSFLGPAMAPGHMI 199 (300)
Q Consensus 120 ~p~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~~~~l~~~l~~~h~~ 199 (300)
..+|...+..++++++..|+..||.||.+|++.+||+.|+.||.+..++++++.++||++.+++++|..+.++++|.|..
T Consensus 122 ~~gw~~~~~~i~~flfF~Df~iYw~HR~lH~~~vy~~LH~~HH~~~~~tpfAslafhpidg~lqaip~~I~~Fi~Plh~~ 201 (312)
T KOG0872|consen 122 EYGWFLLFVSIFLFLFFTDFGIYWAHRELHHRGVYKRLHKPHHIWNICTPFASLAFHPIDGFLQAIPYHIYPFIFPLHKV 201 (312)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcchhhhhhccCchhhhhcCcchhHhhhchhHheeeeecchHH
Confidence 34677778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCcCCCCcccccccccCHHHHhhhhcCCCCCCcccCCCchhhhhhcCCCcccHH--------
Q 022260 200 TFWLWIALRQIEAIDTHSGYDFPWGFTKYIPFYGGADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGYRY-------- 271 (300)
Q Consensus 200 ~~~~~~~~~~~~~~~~Hsgy~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~~NYG~~~~~wD~lfGT~~~~~~-------- 271 (300)
+++....+..++++.+|.|..... .|.++|+.+|..||.. ++.|||.++++|||+|||.+.++.
T Consensus 202 t~L~l~~f~~iwt~~IHd~~~~~l-----~~~ingaahHtvHH~~---f~~NYG~~tilwDrmfgSfr~p~~~~~d~~l~ 273 (312)
T KOG0872|consen 202 TYLSLFTFVNIWTISIHDGIYGSL-----NPPINGAAHHTVHHTY---FDYNYGQYTILWDRMFGSFRAPDHEDFDIYLR 273 (312)
T ss_pred HHHHHHHHHHhHheeeeccccccc-----cCccccccccceeeee---EecCCCcEEEeHHhccCcccCccccccchhhc
Confidence 999999999999999999966532 2458999999999985 689999999999999999987655
Q ss_pred -HHHHHHHHHHHHhcCCCCCCCc
Q 022260 272 -QKKLLRKMQEELRGSGEQNGGS 293 (300)
Q Consensus 272 -~~~~~~~~~~~~~~~~~~~~~~ 293 (300)
+|+..++..+|-|+..-+..|+
T Consensus 274 ~nkdsf~~~~~e~k~f~k~v~G~ 296 (312)
T KOG0872|consen 274 TNKDSFKKEEKEFKGFTKEVEGD 296 (312)
T ss_pred cChhHHHHHHHHhhccccccCCC
Confidence 3666666666665544444443
No 6
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.80 E-value=1.5e-19 Score=144.49 Aligned_cols=110 Identities=34% Similarity=0.547 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHhhc-cchhhhhhhhccCCCCCCCccccccCChHHHHHHHHHHH-HHhhhcchhHHHHHHHHHHH
Q 022260 131 VVYFMVEDYTNYWIHRFLH-CKWGYEKIHRVHHEYTAPIGFAAPYAHWAEILILGIPSF-LGPAMAPGHMITFWLWIALR 208 (300)
Q Consensus 131 ~~~~l~~D~~~Y~~HRl~H-~~~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~~~~-l~~~l~~~h~~~~~~~~~~~ 208 (300)
++++++.|+++||+||++| .+++| ++|+.||+.++|+++++.+.+|+|.++..+... ++.++.+.+..++.++.++.
T Consensus 2 ~~~~l~~d~~~Y~~HRl~H~~~~l~-~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF04116_consen 2 LLGFLLWDFWEYWMHRLLHKIPFLW-RIHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLLPLLLLPFHALAFLLGIALF 80 (114)
T ss_pred eeeHHHHHHHHHHHHHHHhcCchHH-HHHHHHhCCcccCchHHHHcChHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 4678999999999999999 56665 999999999999999999999999999864433 44456788999999999999
Q ss_pred HHHHHhhhhCCcCCC-CcccccccccCHHHHhhhhc
Q 022260 209 QIEAIDTHSGYDFPW-GFTKYIPFYGGADYHDYHHY 243 (300)
Q Consensus 209 ~~~~~~~Hsgy~~p~-~~~~~~~~~~~~~~H~~HH~ 243 (300)
.+.+...|||+..+. .+.++ +..++++|+.||+
T Consensus 81 ~~~~~~~H~~~~~~~~~~~~~--~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 81 YLWYIFIHSGYHHRFPPRLRY--LFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHhhcCccCCCCCcchh--HhcCHHHHHhhCc
Confidence 999999999993322 22222 4678999999995
No 7
>PLN02434 fatty acid hydroxylase
Probab=99.36 E-value=7.5e-12 Score=112.91 Aligned_cols=135 Identities=18% Similarity=0.189 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhccc-------hhhhhhhhccCCCCCCCccccccCChHHHHHHHHHHHHHh-hhcc
Q 022260 125 EILAQLVVYFMVEDYTNYWIHR-FLHCK-------WGYEKIHRVHHEYTAPIGFAAPYAHWAEILILGIPSFLGP-AMAP 195 (300)
Q Consensus 125 ~~~~~~~~~~l~~D~~~Y~~HR-l~H~~-------~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~~~~l~~-~l~~ 195 (300)
..+..++++++++.+.+|.+|| ++|.+ .+....|..||.. |.......+.|.-+++.+++..... ++++
T Consensus 82 ~~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~--P~D~~rLv~PP~~~~~l~~~~~~l~~~~~~ 159 (237)
T PLN02434 82 AVVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKH--PMDGLRLVFPPAATAILCVPFWNLIALFAT 159 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcC--CCCCCCeecCcHHHHHHHHHHHHHHHHHcc
Confidence 4456688899999999999999 89942 2334678899965 4444444567777666555443222 2232
Q ss_pred hhH-HHHHHH----HHHHHHHHHhhhhCCcCCCCcccccccccCHHHHhhhhcCCCCCCcccCCCchhhhhhcCCCccc
Q 022260 196 GHM-ITFWLW----IALRQIEAIDTHSGYDFPWGFTKYIPFYGGADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGY 269 (300)
Q Consensus 196 ~h~-~~~~~~----~~~~~~~~~~~Hsgy~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~~NYG~~~~~wD~lfGT~~~~ 269 (300)
... .++++- .+.-.......|.+ +......+.+ -++|..||.++ .+.|||...++|||+|||..+.
T Consensus 160 ~~~a~~~~~G~l~gYl~Yd~~Hy~lH~~-~p~~~~~r~l-----kr~H~~HHfk~--~~~~fGVTs~~wD~vFGT~~~~ 230 (237)
T PLN02434 160 PATAPALFGGGLLGYVMYDCTHYFLHHG-QPSTDVLRNL-----KKYHLNHHFRD--QDKGFGITSSLWDRVFGTLPPS 230 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchHHHHHH-----HHHHHHHcCCC--CCCCCCcCchHHHHhcCCCCCc
Confidence 211 111111 11122333455653 2212222222 78999999875 4889999999999999998654
No 8
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=98.54 E-value=2.8e-07 Score=80.91 Aligned_cols=135 Identities=21% Similarity=0.262 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhccc---hhhh------hhhhccCCCCCCCccccccCChHHHHHHHHHHHHHhhhcc
Q 022260 126 ILAQLVVYFMVEDYTNYWIHR-FLHCK---WGYE------KIHRVHHEYTAPIGFAAPYAHWAEILILGIPSFLGPAMAP 195 (300)
Q Consensus 126 ~~~~~~~~~l~~D~~~Y~~HR-l~H~~---~ly~------~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~~~~l~~~l~~ 195 (300)
+..-+++.++.+.+.+|.+|| ++|.+ .-|+ -+|..||.. |..-....+.|+-..+...|.+....++-
T Consensus 83 ~~~~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~--P~D~~RLVfPP~~~~il~~pfy~~~~~vl 160 (240)
T KOG0539|consen 83 FSGLFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKL--PMDGYRLVFPPTPFAILAAPFYLILSLVL 160 (240)
T ss_pred hhHHHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccC--CCCCceEecCCchHHHHHHHHHHHHHHhc
Confidence 445578899999999999999 78843 2222 358899965 44444556788888777666554332221
Q ss_pred hhHHH-------HHHHHHHHHHHHHhhhhCCcCCCCcccccccccCHHHHhhhhcCCCCCCcccCCCchhhhhhcCCCcc
Q 022260 196 GHMIT-------FWLWIALRQIEAIDTHSGYDFPWGFTKYIPFYGGADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKG 268 (300)
Q Consensus 196 ~h~~~-------~~~~~~~~~~~~~~~Hsgy~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~~NYG~~~~~wD~lfGT~~~ 268 (300)
.+... ++.++.+-.. ....|-| +.|..+. +-.-.++|.-||.+. .+..||....+||++|||..+
T Consensus 161 ~~~~~~a~faG~l~GYV~YDmt-HYyLHhg-~p~~~~~----~~~lK~yHl~HHfk~--q~~GfGItS~lWD~VFgTl~~ 232 (240)
T KOG0539|consen 161 PHPVAPAGFAGGLLGYVCYDMT-HYYLHHG-SPPKRPY----LKHLKKYHLNHHFKH--QDLGFGITSSLWDYVFGTLGP 232 (240)
T ss_pred Ccchhhhhhccchhhhhhhhhh-hhhhhcC-CCCCchH----HHHHHHHHhhhhhhc--cccCccccHHHHHHHhccCCC
Confidence 22221 1112222221 2233433 2222111 112378899999864 578999999999999999987
Q ss_pred cH
Q 022260 269 YR 270 (300)
Q Consensus 269 ~~ 270 (300)
.+
T Consensus 233 ~~ 234 (240)
T KOG0539|consen 233 LK 234 (240)
T ss_pred Cc
Confidence 53
No 9
>PLN02601 beta-carotene hydroxylase
Probab=98.33 E-value=9.7e-06 Score=73.78 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHH-hhccchhhhhhhhccCCCCCCCccccccCChHHHHHHHHHHHHHhhhcch-----h---H-
Q 022260 129 QLVVYFMVEDYTNYWIHR-FLHCKWGYEKIHRVHHEYTAPIGFAAPYAHWAEILILGIPSFLGPAMAPG-----H---M- 198 (300)
Q Consensus 129 ~~~~~~l~~D~~~Y~~HR-l~H~~~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~~~~l~~~l~~~-----h---~- 198 (300)
-++..++..|++-.|.|| +||- ..|.+|+-||+.+. .++. .++ +=+++.++|.++.. .+|. - .
T Consensus 139 l~lgtfvgMEf~Aw~aHKYvMHG--~LW~lH~sHH~Pr~-g~FE--~ND-lFaVifAvpAIaL~-~~G~~~~g~~p~~~f 211 (303)
T PLN02601 139 LSVGAAVGMEFWARWAHRALWHD--SLWNMHESHHKPRE-GAFE--LND-VFAIVNAVPAIGLL-YYGFFNKGLVPGLCF 211 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cchhhhhhcCCCCC-CCcc--ccc-chhhhhHHHHHHHH-HHhhccccccHHHHH
Confidence 346677888999999999 9997 46899999998874 2232 122 22233333332211 1111 0 0
Q ss_pred ---HHHHHH-HHHHHHHHHhhhhCCcCCCCcccccccc-cCHHHHhhhhcCCCCCCcccCCCc
Q 022260 199 ---ITFWLW-IALRQIEAIDTHSGYDFPWGFTKYIPFY-GGADYHDYHHYVGEQSHSNFASVF 256 (300)
Q Consensus 199 ---~~~~~~-~~~~~~~~~~~Hsgy~~p~~~~~~~~~~-~~~~~H~~HH~~~~~~~~NYG~~~ 256 (300)
+.+.+| +++..+...++|- ++|+.+..-.|++ .-.+.|++||. ++....+||..+
T Consensus 212 giGlGITlYGiaYffVHDgLVHq--Rfp~~~~a~~~Y~rrl~~AHklHHa-~Ke~Gv~FGfll 271 (303)
T PLN02601 212 GAGLGITVFGMAYMFVHDGLVHK--RFPVGPIANVPYLRKVAAAHQLHHT-DKFKGVPYGLFL 271 (303)
T ss_pred HHHHhHHHHHHHHHHHhhhhhcc--ccccCCCCCCHHHHHHHHHHHhhcc-CCcCCccceEEe
Confidence 111122 2334444555555 4454432111222 23789999998 323456888754
No 10
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.63 E-value=0.00019 Score=70.34 Aligned_cols=130 Identities=19% Similarity=0.225 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhhhccCCCCCCCcc---------ccccCChHHHHHHHHHHHHHhhhc-----c----
Q 022260 134 FMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTAPIGF---------AAPYAHWAEILILGIPSFLGPAMA-----P---- 195 (300)
Q Consensus 134 ~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p~~~---------~a~~~hp~E~ll~~~~~~l~~~l~-----~---- 195 (300)
.++.|+.+=.+|-+.|....+.|+|..||++-.++-- +..|.+|.|+++..+...++.+++ +
T Consensus 16 ~~~~~~~~d~~h~~~h~~~~l~~~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (406)
T PRK07424 16 ILWVEIVRDSYHALAHQWNPLYRLHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLLFGTLPVLLLQQWNVPYGWL 95 (406)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHHHhhHHHHHHhhhcccccch
Confidence 3344444444555556433556899999998765432 356789999777532111111111 0
Q ss_pred --hhHHHHHHHH---HHHHHHHHhhhhCCcC---C--C--CcccccccccCHHHHhhhhcCCCCCCcccCCCchhhhhhc
Q 022260 196 --GHMITFWLWI---ALRQIEAIDTHSGYDF---P--W--GFTKYIPFYGGADYHDYHHYVGEQSHSNFASVFTYCDFLY 263 (300)
Q Consensus 196 --~h~~~~~~~~---~~~~~~~~~~Hsgy~~---p--~--~~~~~~~~~~~~~~H~~HH~~~~~~~~NYG~~~~~wD~lf 263 (300)
.+..-.+.|+ ++....-...-+|-|. | . .|.+ ++.++.+|-.||..+ -+.-|+..+++-|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~d~~h~~~~~~~~~~~---~~v~~~~h~rh~~~~--~~~~~~~~~~~~d~~~ 170 (406)
T PRK07424 96 AWLGVLYTLTFLFGAIARGLGLPNADELTDLTHLPGPFETLPSQ---WFVNRPYHWRHHFDN--QNAYYCGTFTLVDKLM 170 (406)
T ss_pred hhhhhHHHHHHHHHHHHHhcccccccccccccCCCCcccCCCcc---CeecCceeEEEEecc--ccceeeeeEEEeehhc
Confidence 0111122222 2222211111133332 3 1 1222 467889999999743 2466788899999999
Q ss_pred CCCcc
Q 022260 264 GTDKG 268 (300)
Q Consensus 264 GT~~~ 268 (300)
||...
T Consensus 171 ~ta~s 175 (406)
T PRK07424 171 GTALS 175 (406)
T ss_pred CcccC
Confidence 99754
No 11
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=94.11 E-value=0.12 Score=45.06 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=43.4
Q ss_pred HHHHhhhhCCcCCCC--cccccccccCHHHHhhhhcCCCCCCcccCCCchhhhhhcCCCcccHHHHHHHH
Q 022260 210 IEAIDTHSGYDFPWG--FTKYIPFYGGADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGYRYQKKLLR 277 (300)
Q Consensus 210 ~~~~~~Hsgy~~p~~--~~~~~~~~~~~~~H~~HH~~~~~~~~NYG~~~~~wD~lfGT~~~~~~~~~~~~ 277 (300)
-..-..|.....|.. .++-.-++.++++|..||... .+.||+...++|+.+.....-+++-|++..
T Consensus 100 q~HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aP--h~~~YCI~tGw~N~~Ld~~~f~~~lE~~i~ 167 (178)
T PF10520_consen 100 QFHKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAP--HDTNYCITTGWLNPPLDKIRFWRRLERVIT 167 (178)
T ss_pred HHHHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCc--ccCCeEeecccchHHHHHhhHHHHHHHHHH
Confidence 334566775555421 111112467899999999853 689999999999999887766554444433
No 12
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=85.59 E-value=11 Score=33.40 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=11.4
Q ss_pred hhhhhhhccCCCCC
Q 022260 153 GYEKIHRVHHEYTA 166 (300)
Q Consensus 153 ly~~~H~~HH~~~~ 166 (300)
.++.-|..||+.++
T Consensus 74 ~w~~~H~~HH~~~~ 87 (207)
T cd03514 74 VFRRVHMQHHAHTN 87 (207)
T ss_pred HHHHHHHHHhcCcC
Confidence 46788999999875
No 13
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=68.10 E-value=64 Score=28.11 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=27.8
Q ss_pred CcccCCCchhhhhhcCCCc-----------ccHHHHHHHHHHHHHHhcCCC
Q 022260 249 HSNFASVFTYCDFLYGTDK-----------GYRYQKKLLRKMQEELRGSGE 288 (300)
Q Consensus 249 ~~NYG~~~~~wD~lfGT~~-----------~~~~~~~~~~~~~~~~~~~~~ 288 (300)
..|+ ..-.++|+++|-.. +.....+....+|+.++|+|+
T Consensus 155 t~~~-~~~~~~~~l~ggln~qieHHLfP~ip~~~l~~~~~~v~~~~~~~gv 204 (204)
T cd03506 155 TRNI-TGSPFLDWLHGGLNYQIEHHLFPTMPRHNYPKVAPLVRELCKKHGL 204 (204)
T ss_pred cccC-CCCCHHHHHhcchhhHHHHhcCCCchhhhHHHHHHHHHHHHHHhCc
Confidence 5677 33578888888632 344557888899999999874
No 14
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=65.90 E-value=30 Score=29.70 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=11.6
Q ss_pred hhhhhhhhccCCCCC
Q 022260 152 WGYEKIHRVHHEYTA 166 (300)
Q Consensus 152 ~ly~~~H~~HH~~~~ 166 (300)
..|+..|..||+..+
T Consensus 71 ~~~r~~H~~HH~~~~ 85 (175)
T cd03510 71 AAYRRSHLKHHRHLG 85 (175)
T ss_pred HHHHHHHHHHhCccC
Confidence 457888999999763
No 15
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=55.28 E-value=24 Score=32.48 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc------chh---hhhhhhccCCCCCCCccccccCChHHHHHHH-HHH---HH
Q 022260 123 GWEILAQLVVYFMVEDYTNYWIHRFLHC------KWG---YEKIHRVHHEYTAPIGFAAPYAHWAEILILG-IPS---FL 189 (300)
Q Consensus 123 ~~~~~~~~~~~~l~~D~~~Y~~HRl~H~------~~l---y~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~-~~~---~l 189 (300)
|...++...++.+..|+..=.+|..--+ |.+ +-+ =+-||... ++-.+...+|.+... ... +.
T Consensus 106 ~~~~~La~~aG~i~AD~~SGl~HWaaD~~Gsv~tP~vG~~f~r-freHH~dP----~tITr~~f~~~~~ll~~a~~f~v~ 180 (293)
T KOG3011|consen 106 WLEPALAAYAGYITADLGSGVYHWAADNYGSVSTPWVGRQFER-FQEHHKDP----WTITRRQFANNLHLLARAYTFIVL 180 (293)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEeeccccCccccchhHHHHHH-HHhccCCc----ceeeHHHHhhhhHHHHHhheeEec
Confidence 4556678888999999999999986542 222 233 45788653 343344444443221 100 01
Q ss_pred Hh-hhc---chh--HHHHHHHHHHHHHHHHhhhhCCcCC-CC-cccccccccCHHHHhhhhcCCCCCCcccCCCchhhhh
Q 022260 190 GP-AMA---PGH--MITFWLWIALRQIEAIDTHSGYDFP-WG-FTKYIPFYGGADYHDYHHYVGEQSHSNFASVFTYCDF 261 (300)
Q Consensus 190 ~~-~l~---~~h--~~~~~~~~~~~~~~~~~~Hsgy~~p-~~-~~~~~~~~~~~~~H~~HH~~~~~~~~NYG~~~~~wD~ 261 (300)
++ ++. +.| +..+.+++.+..-..-+.|.-..+| |- .+.-.-.+....+|..||... .+.||....++|.+
T Consensus 181 ~~d~~~q~~~~h~fV~~~~i~v~~tnQiHkWsHTy~gLP~wVv~LQd~hlilpRkhH~iHH~aP--h~~yyCI~tGw~N~ 258 (293)
T KOG3011|consen 181 PLDLAFQDPVFHGFVFLFAICVLFTNQIHKWSHTYSGLPPWVVLLQDMHLILPRKHHRIHHVAP--HNTYYCIVSGWWNW 258 (293)
T ss_pred CHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHhhcceecccccccccccCc--cccceEEeechhhc
Confidence 11 111 122 2233344445555556778655565 21 111001245678999999864 58899999999988
Q ss_pred hcCCC
Q 022260 262 LYGTD 266 (300)
Q Consensus 262 lfGT~ 266 (300)
..---
T Consensus 259 ~Le~~ 263 (293)
T KOG3011|consen 259 VLDES 263 (293)
T ss_pred hHHHH
Confidence 76443
No 16
>PLN02434 fatty acid hydroxylase
Probab=48.74 E-value=29 Score=31.68 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccch---hhhhhhhccCCCCC
Q 022260 124 WEILAQLVVYFMVEDYTNYWIHRFLHCKW---GYEKIHRVHHEYTA 166 (300)
Q Consensus 124 ~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~---ly~~~H~~HH~~~~ 166 (300)
..+....+++.+++|...|..|..--.+. -.|+.|..||--..
T Consensus 164 ~~~~~G~l~gYl~Yd~~Hy~lH~~~p~~~~~r~lkr~H~~HHfk~~ 209 (237)
T PLN02434 164 PALFGGGLLGYVMYDCTHYFLHHGQPSTDVLRNLKKYHLNHHFRDQ 209 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCCC
Confidence 34566778888999999999997422222 36888999996543
No 17
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=33.53 E-value=83 Score=30.13 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=19.9
Q ss_pred ccCHHHHhhhhcCCCCCCcccCCCchhhhhhcC
Q 022260 232 YGGADYHDYHHYVGEQSHSNFASVFTYCDFLYG 264 (300)
Q Consensus 232 ~~~~~~H~~HH~~~~~~~~NYG~~~~~wD~lfG 264 (300)
..+-.+|..||....-+-.||.......-...+
T Consensus 265 ~~n~nyH~~HHl~P~vP~y~lp~~~~~~~~~~~ 297 (343)
T COG3239 265 TGNINYHVEHHLFPDVPWYRLPRAHRLIKEALG 297 (343)
T ss_pred cCCccccHhhhCCCCCchhhHHHHHHHHHHHcC
Confidence 356789999998654445555544444444444
No 18
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=31.43 E-value=3.5e+02 Score=23.51 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=20.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhccCCCCC
Q 022260 119 PLPSGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTA 166 (300)
Q Consensus 119 ~~p~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~ 166 (300)
..+.+.+.++.++..+.... .+.-+-+.|+.||+...
T Consensus 33 k~~~~l~~~l~~~g~~a~qg-----------s~~~W~~~HR~HH~~sD 69 (178)
T cd03505 33 KAPKPLRIFLAILGSLAGQG-----------SPLWWVADHRLHHRYSD 69 (178)
T ss_pred cCcHHHHHHHHHHHHHHcCc-----------CHHHHHHHHHHhhcccC
Confidence 45556665554444432222 23334578999998764
No 19
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=29.81 E-value=89 Score=26.78 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=26.6
Q ss_pred cCHHHHhhhhcCCCCCCcccCCCchhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCC
Q 022260 233 GGADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQ 289 (300)
Q Consensus 233 ~~~~~H~~HH~~~~~~~~NYG~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~~~~~ 289 (300)
.+-.+|..||... ..+..+-.+..+.++++.+|++++
T Consensus 216 ~~~~~H~~HHl~P--------------------~vp~~~l~~~~~~~~~~~~~~~~~ 252 (257)
T PF00487_consen 216 GGLNYHIEHHLFP--------------------GVPWYNLPEAHPILKEVCPEYGVP 252 (257)
T ss_pred cCCCChHHhCCCC--------------------CcCHHHHHHHHHHHHHHHHHcCCc
Confidence 4566899999732 222556678889999999998875
No 20
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.34 E-value=38 Score=28.55 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=38.5
Q ss_pred CcccCCCchhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCCCC
Q 022260 249 HSNFASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQNG 291 (300)
Q Consensus 249 ~~NYG~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (300)
-+||.......|.++-|...-++-++..+-++|.+.|++..|-
T Consensus 84 lkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itkegliGm 126 (149)
T KOG3364|consen 84 LKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKEGLIGM 126 (149)
T ss_pred HhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcceeee
Confidence 5699888899999999998888888999999999999998774
No 21
>PRK10062 hypothetical protein; Provisional
Probab=24.13 E-value=2.5e+02 Score=26.59 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022260 82 EMVRCYKDVMRMFFLVVGPLQLVSFPSVQMVGIRTGLPLPSGWEILAQLVVYFMVEDYTNYWIHRFLHC 150 (300)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~ 150 (300)
-+++.-+.|++|-+. +.|..++...++ |..-..++-+--.++++|=.+=..|++.|+
T Consensus 57 vvw~IAkGSl~NKlI-lvP~ALllSafa-----------Pw~itpLLMlGG~yLcfEGaEKv~~~~~~~ 113 (303)
T PRK10062 57 VVWGVAKGSLINKVI-LVPLALIISAFI-----------PWAITPLLMIGGAFLCFEGVEKVLHMLEAR 113 (303)
T ss_pred hhHHHHHhhHhhhHH-HHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHhhHHHHHHHHccC
Confidence 378888999999884 458776544332 333334555666888999999999998776
No 22
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=23.79 E-value=4.1e+02 Score=21.80 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 022260 130 LVVYFMVEDYTNYWI 144 (300)
Q Consensus 130 ~~~~~l~~D~~~Y~~ 144 (300)
..+.+++.|++.|+.
T Consensus 119 ~al~vlvAEv~l~~~ 133 (142)
T PF11712_consen 119 GALLVLVAEVVLYIR 133 (142)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556789999876
No 23
>PF05661 DUF808: Protein of unknown function (DUF808); InterPro: IPR008526 This family consists of several bacterial proteins of unknown function.
Probab=23.55 E-value=2.5e+02 Score=26.51 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022260 82 EMVRCYKDVMRMFFLVVGPLQLVSFPSVQMVGIRTGLPLPSGWEILAQLVVYFMVEDYTNYWIHRFLHCK 151 (300)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~ 151 (300)
-+++.-+.|++|-+. +.|..++...++ |..-..++-+--.++++|=.+=..|++.|+.
T Consensus 57 vvw~IakGSl~NKlI-llP~ALllSafa-----------Pw~itplLmlGG~yLcfEGaEKv~~~~~~~~ 114 (295)
T PF05661_consen 57 VVWAIAKGSLRNKLI-LLPAALLLSAFA-----------PWAITPLLMLGGAYLCFEGAEKVWHKFFHHK 114 (295)
T ss_pred HHHHHHHhhhhhhHH-HHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHhHHHHHHHHHcCCc
Confidence 378888999999875 568776544332 2333335556667889999999999998874
No 24
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=22.76 E-value=1.4e+02 Score=28.46 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhccCCCCC
Q 022260 119 PLPSGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKIHRVHHEYTA 166 (300)
Q Consensus 119 ~~p~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~ 166 (300)
.+|.+.+.++.+.-++.+++-...|. +.|+.||+++.
T Consensus 97 Ka~kpLr~fla~~~~~A~Qg~~~~Wv-----------rdHR~HHk~td 133 (321)
T KOG1600|consen 97 KAPKPLRYFLAYCNTLAFQGDIIDWV-----------RDHRVHHKFTD 133 (321)
T ss_pred cCCccHHHHHHHHHHHhccCChhHHH-----------hhhhhhccccc
Confidence 35667777666666666665555543 57888888764
No 25
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=21.75 E-value=43 Score=31.82 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=29.1
Q ss_pred HHHHhhhhcCCC----CCCcccCCCchhhhhhcCCCcccHH
Q 022260 235 ADYHDYHHYVGE----QSHSNFASVFTYCDFLYGTDKGYRY 271 (300)
Q Consensus 235 ~~~H~~HH~~~~----~~~~NYG~~~~~wD~lfGT~~~~~~ 271 (300)
.+.|+.||+..+ -.+.+=|..|+-.=|++-|..+-.+
T Consensus 122 vrdHR~HHk~tdTD~DPhn~~rGF~FsHvgWl~~~k~p~~k 162 (321)
T KOG1600|consen 122 VRDHRVHHKFTDTDADPHNPRRGFWFSHVGWLLDKKHPQVK 162 (321)
T ss_pred HhhhhhhccccccCCCCCCcccchhhhhhhhHhccCChHHH
Confidence 789999998753 2466779999999999999876433
No 26
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.05 E-value=47 Score=28.02 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=36.9
Q ss_pred hhhhcCCCCCCccc-CCCchhhhhhcCCCcccHHHHHHHHHHHHHHhcC
Q 022260 239 DYHHYVGEQSHSNF-ASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGS 286 (300)
Q Consensus 239 ~~HH~~~~~~~~NY-G~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~~ 286 (300)
..|-++. +-..|| |+.-.+=|.+.-+..++++-+++.+++++++|.-
T Consensus 80 eYHtsYt-~VqiNf~~Sl~dL~dii~~~f~sdeev~ey~~ei~~l~e~g 127 (170)
T COG4860 80 EYHTSYT-NVQINFMGSLSDLADIIYAAFLSDEEVKEYEDEIKALMEEG 127 (170)
T ss_pred hhhhhee-eEEEEEEEeHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 4454443 345687 6667799999999999999999999999998753
No 27
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=20.34 E-value=3.5e+02 Score=24.70 Aligned_cols=14 Identities=36% Similarity=0.499 Sum_probs=10.9
Q ss_pred hhhhhhhccCCCCC
Q 022260 153 GYEKIHRVHHEYTA 166 (300)
Q Consensus 153 ly~~~H~~HH~~~~ 166 (300)
.|+.-|..||+.++
T Consensus 94 ~~~~~H~~HH~~~~ 107 (285)
T cd03511 94 FFRWSHARHHRYTQ 107 (285)
T ss_pred HHHHHHHHHhcCcC
Confidence 46778999999873
No 28
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.24 E-value=63 Score=20.12 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCCCCCCccccc
Q 022260 275 LLRKMQEELRGSGEQNGGSYQNL 297 (300)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~ 297 (300)
...++|+++++.|.+-.|++..+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~L 27 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAEL 27 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHH
Confidence 45789999999999999997643
Done!