Query 022260
Match_columns 300
No_of_seqs 240 out of 1357
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:31:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n0f_A Isoprene synthase; terp 33.7 18 0.00061 35.7 2.2 48 236-285 4-55 (555)
2 2jyl_A Capsid protein P24 (Ca) 32.3 30 0.001 26.4 2.8 54 234-289 2-56 (105)
3 2ki0_A DS119; beta-alpha-beta, 28.8 33 0.0011 20.3 1.9 15 274-288 15-29 (36)
4 1mhx_A Immunoglobulin-binding 17.6 7.5 0.00026 26.4 -2.7 48 249-296 9-56 (65)
5 1x6i_A Hypothetical protein YG 14.9 1E+02 0.0036 22.6 2.7 30 256-285 55-85 (91)
6 1yww_A Hypothetical protein PA 14.0 46 0.0016 24.3 0.5 29 234-266 2-30 (85)
7 3mfn_A Uncharacterized protein 13.2 64 0.0022 25.9 1.1 30 269-298 35-64 (157)
8 3ewt_E Tumor necrosis factor r 11.8 1.9E+02 0.0065 16.2 2.5 18 271-288 8-25 (25)
9 2lr2_A Immunoglobulin G-bindin 11.8 1.7E+02 0.0057 21.1 2.8 62 234-298 2-65 (88)
10 3hkz_Y DNA-directed RNA polyme 11.6 1.3E+02 0.0044 22.2 2.2 34 256-289 48-81 (104)
No 1
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=33.74 E-value=18 Score=35.72 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=19.1
Q ss_pred HHHhhhhcCCCCCCcccCCCchhhhhhcCCCcc----cHHHHHHHHHHHHHHhc
Q 022260 236 DYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKG----YRYQKKLLRKMQEELRG 285 (300)
Q Consensus 236 ~~H~~HH~~~~~~~~NYG~~~~~wD~lfGT~~~----~~~~~~~~~~~~~~~~~ 285 (300)
.+|+-||.......+||.+ ++||--|=++.. .+..++..+++|+|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~p--s~W~~~fl~~~~~~~~~~~~~~~~e~Lk~eVr~ 55 (555)
T 3n0f_A 4 SHHHHHHGSEARRSADYEP--NSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRR 55 (555)
T ss_dssp -------------CCCCCC--CTTCHHHHTCC-----CHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCCCc--ccccccccccCCcchhhHHHHHHHHHHHHHHHH
Confidence 4666677665557889987 679665544321 22334444555555543
No 2
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A*
Probab=32.32 E-value=30 Score=26.41 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=22.4
Q ss_pred CHHHHhhhhcCCCCCCcccCCCchhhhhhcCCCcccHHHH-HHHHHHHHHHhcCCCC
Q 022260 234 GADYHDYHHYVGEQSHSNFASVFTYCDFLYGTDKGYRYQK-KLLRKMQEELRGSGEQ 289 (300)
Q Consensus 234 ~~~~H~~HH~~~~~~~~NYG~~~~~wD~lfGT~~~~~~~~-~~~~~~~~~~~~~~~~ 289 (300)
+..+|.-||+.+ --..-|.+ ..+||.-=|...+|++.. +.++-+++|..-..++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~sp-~si~~IkQGpKEPf~dyVdR~~k~l~ae~~~~~vK 56 (105)
T 2jyl_A 2 GSSHHHHHHSSG-LVPRGSHM-TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVK 56 (105)
T ss_dssp ----------------------CCGGGCCCCSSSCHHHHHHHHHHHHHHHCCCTTTT
T ss_pred CcccccccccCc-ceeeeecC-cchhhhhcCCCCcHHHHHHHHHHHHHHhhcchhhH
Confidence 345677788765 23445666 689999999988887765 3444455554333443
No 3
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=28.77 E-value=33 Score=20.30 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCCC
Q 022260 274 KLLRKMQEELRGSGE 288 (300)
Q Consensus 274 ~~~~~~~~~~~~~~~ 288 (300)
+..+++|+|+.|.+.
T Consensus 15 eelkklkeeakkani 29 (36)
T 2ki0_A 15 EELKKLKEEAKKANI 29 (36)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccE
Confidence 446788899988765
No 4
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=17.62 E-value=7.5 Score=26.38 Aligned_cols=48 Identities=6% Similarity=0.032 Sum_probs=35.4
Q ss_pred CcccCCCchhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCCCCCcccc
Q 022260 249 HSNFASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQNGGSYQN 296 (300)
Q Consensus 249 ~~NYG~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (300)
...|-.+..+=||+--|...-.+-+-.++--|+-+.+.|+.|-|+|.-
T Consensus 9 mdtyklfivigdrvvvt~tkavdaatAeq~FrqYan~NgvdgeWsYD~ 56 (65)
T 1mhx_A 9 MDTYKLFIVIGDRVVVVTTEAVDAATAEKVFKQYANDNGVDGEWTYDD 56 (65)
T ss_dssp CEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTTCCSEEEEET
T ss_pred cceeeEEEEEcCEEEEEEeehhhHHHHHHHHHHHhhccCCccEEEecC
Confidence 346777777889988877665555556667778888889999998853
No 5
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A
Probab=14.95 E-value=1e+02 Score=22.56 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.6
Q ss_pred chhhhhhcCCCcccH-HHHHHHHHHHHHHhc
Q 022260 256 FTYCDFLYGTDKGYR-YQKKLLRKMQEELRG 285 (300)
Q Consensus 256 ~~~wD~lfGT~~~~~-~~~~~~~~~~~~~~~ 285 (300)
-.++||+.|...++. ...+..++|++.+..
T Consensus 55 ~DL~~w~~g~~~~p~~~~~~l~~~I~~~~~~ 85 (91)
T 1x6i_A 55 PDLFNWLMNHGKPADAELEMMVRLIQTRNRE 85 (91)
T ss_dssp HHHHHHHTTSSBCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHhc
Confidence 478999999987754 567788888887664
No 6
>1yww_A Hypothetical protein PA4738; structural genomics, YJBJ, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa}
Probab=14.00 E-value=46 Score=24.35 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=6.4
Q ss_pred CHHHHhhhhcCCCCCCcccCCCchhhhhhcCCC
Q 022260 234 GADYHDYHHYVGEQSHSNFASVFTYCDFLYGTD 266 (300)
Q Consensus 234 ~~~~H~~HH~~~~~~~~NYG~~~~~wD~lfGT~ 266 (300)
++.+|.-||+.++ +......-||++=|+.
T Consensus 2 ~~~~~~~~~~~~~----~~~~~mM~~dkieG~~ 30 (85)
T 1yww_A 2 GSSHHHHHHSSGL----VPRGSHMNSDVIKGKW 30 (85)
T ss_dssp -----------------------CCCCCTTTSH
T ss_pred CcccccccccCCC----chhhhcccHHHHHhHH
Confidence 3556777887653 2222234477777754
No 7
>3mfn_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 2.02A {Dyadobacter fermentans}
Probab=13.22 E-value=64 Score=25.94 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCCcccccc
Q 022260 269 YRYQKKLLRKMQEELRGSGEQNGGSYQNLK 298 (300)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (300)
..+-++..+.-|+-.++...++++-|++.|
T Consensus 35 ~~eArryLdnAkeIL~eka~Ke~~~Y~d~K 64 (157)
T 3mfn_A 35 VIEAKRYLNNAKDILRDKGGKEDGFYQDSK 64 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEETTEECCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCcccchH
Confidence 444566677777778888888888888765
No 8
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=11.78 E-value=1.9e+02 Score=16.15 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhcCCC.
Q 022260 271 YQKKLLRKMQEELRGSGE. 288 (300)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~. 288 (300)
...-..+++|+.++|+|.
T Consensus 8 Ae~M~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 8 AGVMTLSQVKGFVRKNGVx 26 (26)
T ss_pred HHHHhHHHHHHHHHHcCC.
Confidence 345567899999999874
No 9
>2lr2_A Immunoglobulin G-binding protein A; Z domain, lanthanide binding TAG, de novo protein; NMR {Artificial gene}
Probab=11.77 E-value=1.7e+02 Score=21.06 Aligned_cols=62 Identities=16% Similarity=0.327 Sum_probs=34.4
Q ss_pred CHHHHhhhhcCCCCCCccc--CCCchhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCCCCCcccccc
Q 022260 234 GADYHDYHHYVGEQSHSNF--ASVFTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQNGGSYQNLK 298 (300)
Q Consensus 234 ~~~~H~~HH~~~~~~~~NY--G~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (300)
+..+|.-||+... +-|| ...-.++..+.=.....++.....+.+||.--- .++..|-+|.+|
T Consensus 2 gs~~~~~~~~s~v--dNkfnk~qqnAfyEIl~lPNLneeQrnafiqSLkDDp~v-eeq~ngfiqslk 65 (88)
T 2lr2_A 2 GSSHHHHHHSSGV--DNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDSYI-DTNNDGAYEGDE 65 (88)
T ss_dssp -----------CC--CCCCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTSCC-CTTCSSSCCGGG
T ss_pred Ccccccccccchh--cchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHhccCcch-hhhcccchhccc
Confidence 3456777777653 3344 344567888888888888888888999987632 235556666665
No 10
>3hkz_Y DNA-directed RNA polymerase subunit 13; archaea, metal-binding, nucleotidyltransferase, transcription, transferase, zinc, zinc-finger; 3.40A {Sulfolobus solfataricus}
Probab=11.58 E-value=1.3e+02 Score=22.21 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=24.2
Q ss_pred chhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCC
Q 022260 256 FTYCDFLYGTDKGYRYQKKLLRKMQEELRGSGEQ 289 (300)
Q Consensus 256 ~~~wD~lfGT~~~~~~~~~~~~~~~~~~~~~~~~ 289 (300)
.-+||+|..-...-++-++.++++-+..+|....
T Consensus 48 TEIWdkLl~gkISIEEAKklFedn~~~y~kk~~k 81 (104)
T 3hkz_Y 48 TEIWDNLLNGKITLEEAKKLFEDNYKEYEKRDSR 81 (104)
T ss_dssp HHHHHHTTCCSSHHHHHHHHHHHHHTTTTCCCCC
T ss_pred hHHHHHHHcCcccHHHHHHHHHHHHHHHhhhhHH
Confidence 5799999988887777777777666655554443
Done!