Query 022260
Match_columns 300
No_of_seqs 240 out of 1357
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 16:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022260.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022260hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1puza_ a.218.1.1 (A:) Hypothe 12.7 56 0.0041 21.7 2.4 26 256-281 55-81 (82)
2 d2v4jb2 d.58.36.2 (B:2-135) Di 7.7 1.2E+02 0.0087 22.2 2.8 24 272-295 106-129 (134)
3 d1x2la1 a.35.1.7 (A:9-95) Home 7.3 1.2E+02 0.0086 20.5 2.4 25 265-289 4-28 (87)
4 d1zrja1 a.140.2.1 (A:1-37) Het 7.2 1.2E+02 0.0084 17.1 1.9 21 275-295 7-27 (37)
5 g3bzy.1 d.367.1.1 (A:246-262,B 7.1 1E+02 0.0074 21.3 2.0 17 273-289 43-59 (100)
6 d2ia7a1 d.373.1.1 (A:23-133) U 6.6 2E+02 0.014 19.5 3.5 34 248-284 28-61 (111)
7 d1gcca_ d.10.1.2 (A:) GCC-box 6.2 88 0.0064 19.7 1.1 14 4-17 33-46 (63)
8 d1agta_ g.3.7.2 (A:) Agitoxin 6.1 67 0.0049 18.0 0.4 12 287-298 5-16 (38)
9 d1vr4a1 d.230.5.1 (A:1-103) Hy 6.0 1.6E+02 0.012 20.0 2.6 19 269-287 55-73 (103)
10 d1t27a_ d.129.3.4 (A:) Phoshat 5.6 1.4E+02 0.011 24.3 2.5 28 255-284 228-255 (269)
No 1
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=12.65 E-value=56 Score=21.71 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=19.6
Q ss_pred chhhhhhcCCCcccHH-HHHHHHHHHH
Q 022260 256 FTYCDFLYGTDKGYRY-QKKLLRKMQE 281 (300)
Q Consensus 256 ~~~wD~lfGT~~~~~~-~~~~~~~~~~ 281 (300)
-.+|||+.|....+.+ ..+..+++|+
T Consensus 55 ~dL~~wl~g~~~~p~~~~~~ii~~Irk 81 (82)
T d1puza_ 55 QELLALINGHSETDKGHLIPMLEKIRR 81 (82)
T ss_dssp HHHHHHHHTCSCCSCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHc
Confidence 4789999999987644 5667777775
No 2
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=7.74 E-value=1.2e+02 Score=22.15 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccc
Q 022260 272 QKKLLRKMQEELRGSGEQNGGSYQ 295 (300)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~ 295 (300)
.++..+.+++|+++.+.+.+|..+
T Consensus 106 ~~~~v~~L~~eL~~~g~~~Gg~Gf 129 (134)
T d2v4jb2 106 DEASLKALKEDLASRKFDGGSLKF 129 (134)
T ss_dssp SHHHHHHHHHHHHHCBCTTSCBSS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCC
Confidence 367788899999998888887765
No 3
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.26 E-value=1.2e+02 Score=20.49 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=19.5
Q ss_pred CCcccHHHHHHHHHHHHHHhcCCCC
Q 022260 265 TDKGYRYQKKLLRKMQEELRGSGEQ 289 (300)
Q Consensus 265 T~~~~~~~~~~~~~~~~~~~~~~~~ 289 (300)
+....-+.++..+++++|+++++.+
T Consensus 4 ~~~e~ldT~~i~~~v~~~L~~~~I~ 28 (87)
T d1x2la1 4 AEEEQLDTAEIAFQVKEQLLKHNIG 28 (87)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCcCCCCHHHHHHHHHHHHHHcCCC
Confidence 3334556789999999999998864
No 4
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.16 E-value=1.2e+02 Score=17.09 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCCCCCCccc
Q 022260 275 LLRKMQEELRGSGEQNGGSYQ 295 (300)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~ 295 (300)
...++|+++++.|-+-.|+|.
T Consensus 7 ~V~eLK~~Lk~rgL~~sG~Ka 27 (37)
T d1zrja1 7 KVNELREELQRRGLDTRGLKA 27 (37)
T ss_dssp CHHHHHHHHHHTTCCCCSCHH
T ss_pred cHHHHHHHHHHCCCCCCCCHH
Confidence 457899999999999999874
No 5
>g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion proteins EscU {Escherichia coli [TaxId: 562]}
Probab=7.09 E-value=1e+02 Score=21.29 Aligned_cols=17 Identities=0% Similarity=-0.287 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCCCC
Q 022260 273 KKLLRKMQEELRGSGEQ 289 (300)
Q Consensus 273 ~~~~~~~~~~~~~~~~~ 289 (300)
.+..++|++.|+++|+|
T Consensus 43 g~~A~~I~~~A~e~gIP 59 (100)
T g3bzy.1 43 DAKALQIIKLAELYDIP 59 (100)
T ss_dssp THHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHcCCC
Confidence 46788999999999987
No 6
>d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
Probab=6.56 E-value=2e+02 Score=19.47 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=22.1
Q ss_pred CCcccCCCchhhhhhcCCCcccHHHHHHHHHHHHHHh
Q 022260 248 SHSNFASVFTYCDFLYGTDKGYRYQKKLLRKMQEELR 284 (300)
Q Consensus 248 ~~~NYG~~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~ 284 (300)
++-+||. .++|.+|..... ....+..+++++..+
T Consensus 28 ~~p~fG~--~l~~llFe~~~~-~~~~~i~~~I~~aI~ 61 (111)
T d2ia7a1 28 MRPDFGC--GIHDRVFSVINT-TTLGLIENEVKEALI 61 (111)
T ss_dssp TCTTCSC--GGGGCCCSCCCH-HHHHHHHHHHHHHHH
T ss_pred cCCcccc--Eechhhhhhcch-hHHHHHHHHHHHHHH
Confidence 5678886 789999987643 333445556655444
No 7
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.23 E-value=88 Score=19.70 Aligned_cols=14 Identities=50% Similarity=0.610 Sum_probs=10.3
Q ss_pred cCCHHHHHHHhcCC
Q 022260 4 YATIEDAAAALGRN 17 (300)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (300)
|.|+|||+-|.+.-
T Consensus 33 f~t~eeAArAYD~a 46 (63)
T d1gcca_ 33 FETAEDAALAYDRA 46 (63)
T ss_dssp ESSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 67888888776543
No 8
>d1agta_ g.3.7.2 (A:) Agitoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]}
Probab=6.12 E-value=67 Score=18.02 Aligned_cols=12 Identities=33% Similarity=0.235 Sum_probs=10.0
Q ss_pred CCCCCCcccccc
Q 022260 287 GEQNGGSYQNLK 298 (300)
Q Consensus 287 ~~~~~~~~~~~~ 298 (300)
+|+-.||.||+|
T Consensus 5 ~vkc~~s~qclk 16 (38)
T d1agta_ 5 NVSCTGSPQCIK 16 (38)
T ss_dssp CCCCSSGGGGHH
T ss_pred eeEecCChhhcc
Confidence 677889999986
No 9
>d1vr4a1 d.230.5.1 (A:1-103) Hypothetical protein BC1012 {Bacillus cereus [TaxId: 1396]}
Probab=5.96 E-value=1.6e+02 Score=20.01 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHHHhcCC
Q 022260 269 YRYQKKLLRKMQEELRGSG 287 (300)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~ 287 (300)
.+..++..++|++||++.|
T Consensus 55 ~~aR~eA~~rl~~~A~~lG 73 (103)
T d1vr4a1 55 KEARDIAMDEMKELAKQKG 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 4456788889999999865
No 10
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.63 E-value=1.4e+02 Score=24.30 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=17.1
Q ss_pred CchhhhhhcCCCcccHHHHHHHHHHHHHHh
Q 022260 255 VFTYCDFLYGTDKGYRYQKKLLRKMQEELR 284 (300)
Q Consensus 255 ~~~~wD~lfGT~~~~~~~~~~~~~~~~~~~ 284 (300)
.|.|.|.++|=... +-++.+++.+++++
T Consensus 228 ~fcW~DeW~gmTme--dIR~~E~e~q~~L~ 255 (269)
T d1t27a_ 228 LFCWLDKWVDLTMD--DIRRMEEETKRQLD 255 (269)
T ss_dssp HHHTHHHHTTCCHH--HHHHHHHHHHHHHH
T ss_pred HheeHHHHcCCCHH--HHHHHHHHHHHHHH
Confidence 38999999996643 33344444444444
Done!