Query 022261
Match_columns 300
No_of_seqs 127 out of 160
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 16:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k44_A Purine-rich binding pro 100.0 1.7E-48 6E-53 334.6 14.4 141 93-281 2-144 (146)
2 3k44_A Purine-rich binding pro 100.0 1.1E-47 3.8E-52 329.5 12.9 128 29-161 1-143 (146)
3 3n8b_A Uncharacterized protein 98.2 1.2E-06 4.3E-11 70.5 5.8 60 224-283 9-74 (98)
4 3n8b_A Uncharacterized protein 98.2 3.3E-06 1.1E-10 68.1 7.2 59 30-88 2-67 (98)
5 3nm7_A Uncharacterized protein 96.9 0.0018 6.2E-08 54.1 6.8 61 28-88 7-74 (127)
6 3nm7_A Uncharacterized protein 96.6 0.0032 1.1E-07 52.7 5.9 64 222-285 13-83 (127)
7 3ntt_A Capsid protein; gene th 72.7 2.8 9.5E-05 43.8 4.2 30 31-62 223-252 (724)
8 3ng9_A Capsid protein; beta ba 72.3 3 0.0001 43.6 4.4 29 32-62 234-262 (736)
9 1k3v_A Capsid protein VP2; ico 45.4 21 0.00071 36.5 4.9 27 35-63 60-86 (579)
10 4agh_A Mosub1, transcription c 43.7 35 0.0012 29.3 5.4 53 230-285 44-113 (158)
11 1pcf_A P15, transcriptional co 43.5 32 0.0011 25.5 4.4 28 255-282 38-65 (66)
12 4b4t_W RPN10, 26S proteasome r 29.9 13 0.00044 34.1 0.4 9 26-34 221-229 (268)
13 3hia_A Choline binding protein 27.0 77 0.0026 24.1 4.4 19 31-49 12-30 (94)
14 1i5h_W Rnedd4, ubiquitin ligas 26.5 55 0.0019 22.5 3.1 26 206-238 7-32 (50)
15 2ysd_A Membrane-associated gua 23.3 80 0.0027 22.4 3.6 25 206-237 10-34 (57)
No 1
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-48 Score=334.55 Aligned_cols=141 Identities=37% Similarity=0.602 Sum_probs=126.5
Q ss_pred CccccccceecccceEEEecCCCCccceeEEeeeccCCCCceEeecCCCCchhHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 022261 93 DHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGS 172 (300)
Q Consensus 93 ~~~~~s~~l~vdnKrFYfDvkeN~RGrFLRISEv~~~~~RstI~IPa~~~~~qGw~~FRd~L~ei~e~~~~~~~p~~~~~ 172 (300)
+++++|+.|++|+|+||||||+|+|||||||||+.+++.|++|+||+ +||.+|||+|++++|+++.+.++++
T Consensus 2 ~~eL~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~~~~g~rs~I~lp~-----~~~~efrd~L~~~ie~~~~~g~~~~--- 73 (146)
T 3k44_A 2 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLAL-----STAAEFRDHLSSFSDYYASLGPPNT--- 73 (146)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECTTCCEEEEEECH-----HHHHHHHHHHHHHHHHHHTSCSCCS---
T ss_pred cccccceeEEEeceEEEEEecccCCeEEEEEEEecCCCcceEEEEEh-----hHHHHHHHHHHHHHHHHHhcCCCcc---
Confidence 57899999999999999999999999999999998777899999999 9999999999999998876554332
Q ss_pred ccchhccccccccCCccccCCCCCCCCCCccccccCCCCCcccccCCcccceeEeeccceEEEEcCCCCceeEEEEeee-
Q 022261 173 EQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEV- 251 (300)
Q Consensus 173 ~~~e~l~~l~d~~G~g~~~~~~~q~~~~~~~~~~~~~~lP~~~~~~~~~~s~~irvdnKrFyFDlg~N~RG~FLRISEv- 251 (300)
.+||+. +.++|++|++|||+||||||+|+||+||||||+
T Consensus 74 ------------------------------------~~~~~~----~~l~s~~i~~~~k~fyfDl~~N~RGrFLRIsE~~ 113 (146)
T 3k44_A 74 ------------------------------------DNLPED----GKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTI 113 (146)
T ss_dssp ------------------------------------SCCCTT----CEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred ------------------------------------ccCCcc----ccccchheeccCceEEEEecccCcceEEEEEEee
Confidence 145553 335689999999999999999999999999999
Q ss_pred -cCCCCceeEechhhHHHHHHHHHHHHHHHH
Q 022261 252 -TGSDRSSIILPLSGLKQFHEIVGHFVEITK 281 (300)
Q Consensus 252 -~g~~RssI~IP~~~~~~F~d~l~~~~d~m~ 281 (300)
++++|++||||+++|.+|+|+|++|+|+|.
T Consensus 114 ~~~~~R~~I~iP~~g~~~Fr~~l~~~~~~~~ 144 (146)
T 3k44_A 114 TRGGPRSQIALPAQGMIEFRDALTDLLEEFG 144 (146)
T ss_dssp SSCCCCEEEEEEGGGHHHHHHHHHHHHHHHC
T ss_pred ccCCCcceEEecHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999984
No 2
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-47 Score=329.54 Aligned_cols=128 Identities=38% Similarity=0.623 Sum_probs=113.2
Q ss_pred CccceeeeeeeeeceeEEEeccCCCCcceEEEEEecC-CcceEEEeecccHHHHHHHHh----hhhcC---------CCc
Q 022261 29 NDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTS-ATRSTIIVPSSGISWFLDLFN----YYVNS---------DDH 94 (300)
Q Consensus 29 ~~~eL~Sk~l~ie~KrFYlDlKeN~RGRFLKIaE~~~-g~rs~I~lp~~g~~efrd~L~----~y~~~---------e~~ 94 (300)
++++||||+|++|+||||||||||+|||||||||+++ +.||+|+||+++++||+|+|. +|+.. ++.
T Consensus 1 ~~~eL~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~~~~g~rs~I~lp~~~~~efrd~L~~~ie~~~~~g~~~~~~~~~~~ 80 (146)
T 3k44_A 1 VEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNLPEDG 80 (146)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECTTCCEEEEEECHHHHHHHHHHHHHHHHHHHTSCSCCSSCCCTTC
T ss_pred CcccccceeEEEeceEEEEEecccCCeEEEEEEEecCCCcceEEEEEhhHHHHHHHHHHHHHHHHHhcCCCccccCCccc
Confidence 3689999999999999999999999999999999965 789999999999999999985 55421 222
Q ss_pred cccccceecccceEEEecCCCCccceeEEeeec-cCCCCceEeecCCCCchhHHHHHHHHHHHHHHHh
Q 022261 95 ELFSKELQLDSKVFYFDIGENRRGRFLKVSEAS-VSRNRSTIIVPAGSSRDEGWAAFRNILAEINEAS 161 (300)
Q Consensus 95 ~~~s~~l~vdnKrFYfDvkeN~RGrFLRISEv~-~~~~RstI~IPa~~~~~qGw~~FRd~L~ei~e~~ 161 (300)
.+.|+.|++|||+||||||+|+|||||||||+. .+++|++||||+ +||++|||+|++|+|++
T Consensus 81 ~l~s~~i~~~~k~fyfDl~~N~RGrFLRIsE~~~~~~~R~~I~iP~-----~g~~~Fr~~l~~~~~~~ 143 (146)
T 3k44_A 81 KLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPA-----QGMIEFRDALTDLLEEF 143 (146)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSCCCCEEEEEEG-----GGHHHHHHHHHHHHHHH
T ss_pred cccchheeccCceEEEEecccCcceEEEEEEeeccCCCcceEEecH-----HHHHHHHHHHHHHHHHh
Confidence 355778999999999999999999999999995 356899999999 99999999999998764
No 3
>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}
Probab=98.25 E-value=1.2e-06 Score=70.50 Aligned_cols=60 Identities=23% Similarity=0.524 Sum_probs=54.4
Q ss_pred eeEeeccceEEEEcCCCCcee-EEEEeeec----CC-CCceeEechhhHHHHHHHHHHHHHHHHhh
Q 022261 224 KVIRADQKRFFFDLGSNNRGH-FLRISEVT----GS-DRSSIILPLSGLKQFHEIVGHFVEITKDR 283 (300)
Q Consensus 224 ~~irvdnKrFyFDlg~N~RG~-FLRISEv~----g~-~RssI~IP~~~~~~F~d~l~~~~d~m~~~ 283 (300)
+++++..++|||||++|+.|. ||.|+|-+ +. .|..|.|+..-+.+|.++|.+.++-++..
T Consensus 9 kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~G~ferHkI~LYkEDf~~F~e~L~e~i~~I~~~ 74 (98)
T 3n8b_A 9 KMFTESERTYFMNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENMNEFESNLLKAIAVIKQK 74 (98)
T ss_dssp EECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCeEEEEEeecccCCCeEEEEEeecccCCCCeeeEEEEEEHHHHHHHHHHHHHHHHHHHHh
Confidence 566788999999999999998 99999975 44 79999999999999999999999999876
No 4
>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}
Probab=98.20 E-value=3.3e-06 Score=68.06 Aligned_cols=59 Identities=22% Similarity=0.377 Sum_probs=52.4
Q ss_pred ccceeeeeeeee-ceeEEEeccCCCCcc-eEEEEEec----CC-cceEEEeecccHHHHHHHHhhh
Q 022261 30 DVELVCKTLQVE-HKLFYFDLKENPRGR-YLKISEKT----SA-TRSTIIVPSSGISWFLDLFNYY 88 (300)
Q Consensus 30 ~~eL~Sk~l~ie-~KrFYlDlKeN~RGR-FLKIaE~~----~g-~rs~I~lp~~g~~efrd~L~~y 88 (300)
.+||-|+++... +|.||+|||+|..|. ||.|+|.. .. .|.+|.|..+-+..|.+.|++.
T Consensus 2 RgEvfS~kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~G~ferHkI~LYkEDf~~F~e~L~e~ 67 (98)
T 3n8b_A 2 RGEVYSEKMFTESERTYFMNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENMNEFESNLLKA 67 (98)
T ss_dssp TTEEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cchhhHHHHHhcCCeEEEEEeecccCCCeEEEEEeecccCCCCeeeEEEEEEHHHHHHHHHHHHHH
Confidence 478999999998 999999999999999 99999983 22 5899999999999999988764
No 5
>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}
Probab=96.93 E-value=0.0018 Score=54.14 Aligned_cols=61 Identities=30% Similarity=0.464 Sum_probs=52.0
Q ss_pred CCccceeeeeeeee-ceeEEEeccCCCCcc-eEEEEEec---CC--cceEEEeecccHHHHHHHHhhh
Q 022261 28 GNDVELVCKTLQVE-HKLFYFDLKENPRGR-YLKISEKT---SA--TRSTIIVPSSGISWFLDLFNYY 88 (300)
Q Consensus 28 ~~~~eL~Sk~l~ie-~KrFYlDlKeN~RGR-FLKIaE~~---~g--~rs~I~lp~~g~~efrd~L~~y 88 (300)
|..+||-|+.|... ++.||+|||+|..|. ||-|+|.. .+ .|..|.|=.+-+..|.+.|++.
T Consensus 7 g~ReEIfSkkv~~aGkRTYFFDVK~tR~gDyyLtITESKk~~~G~feKHKIfLYkEDF~kF~e~L~e~ 74 (127)
T 3nm7_A 7 GERGEVYSEKLFTESERTYFFNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENINEFESNLLKA 74 (127)
T ss_dssp -CTTEEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cchhhhhHHHHhhCCCeeEEEEeecccCCCeEEEEEeecccCCCCeeEEEEEEEHHHHHHHHHHHHHH
Confidence 45689999999887 999999999999997 89999973 23 5889999999999999888654
No 6
>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}
Probab=96.60 E-value=0.0032 Score=52.67 Aligned_cols=64 Identities=23% Similarity=0.519 Sum_probs=54.2
Q ss_pred cce-eEeeccceEEEEcCCCCce-eEEEEeeec----CC-CCceeEechhhHHHHHHHHHHHHHHHHhhhc
Q 022261 222 VSK-VIRADQKRFFFDLGSNNRG-HFLRISEVT----GS-DRSSIILPLSGLKQFHEIVGHFVEITKDRIE 285 (300)
Q Consensus 222 ~s~-~irvdnKrFyFDlg~N~RG-~FLRISEv~----g~-~RssI~IP~~~~~~F~d~l~~~~d~m~~~~~ 285 (300)
-|+ ++++..++|||||++|..| .||-|+|-+ +. .|..|.|=..-+..|.++|.+.++-++....
T Consensus 13 fSkkv~~aGkRTYFFDVK~tR~gDyyLtITESKk~~~G~feKHKIfLYkEDF~kF~e~L~e~i~~I~~~~~ 83 (127)
T 3nm7_A 13 YSEKLFTESERTYFFNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENINEFESNLLKAIAVIKQKVS 83 (127)
T ss_dssp EEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHhhCCCeeEEEEeecccCCCeEEEEEeecccCCCCeeEEEEEEEHHHHHHHHHHHHHHHHHHHHhcC
Confidence 454 4467789999999999996 689999976 33 7899999999999999999999999987643
No 7
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=72.72 E-value=2.8 Score=43.83 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=24.6
Q ss_pred cceeeeeeeeeceeEEEeccCCCCcceEEEEE
Q 022261 31 VELVCKTLQVEHKLFYFDLKENPRGRYLKISE 62 (300)
Q Consensus 31 ~eL~Sk~l~ie~KrFYlDlKeN~RGRFLKIaE 62 (300)
.=+....+....|.++|-...|- +|.+|..
T Consensus 223 ~f~~n~V~T~~TR~~~l~~~n~h--~Yk~~~~ 252 (724)
T 3ntt_A 223 TWMGDRVVTKSTRTWVLPSYNNH--QYREIKS 252 (724)
T ss_dssp EEETTEEEEEEEEEEEECCGGGS--CCEEEEE
T ss_pred EECCCEEEEeeeeEEEecCCCCc--eeeeecc
Confidence 34566788889999999999988 7888875
No 8
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=72.33 E-value=3 Score=43.63 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=24.1
Q ss_pred ceeeeeeeeeceeEEEeccCCCCcceEEEEE
Q 022261 32 ELVCKTLQVEHKLFYFDLKENPRGRYLKISE 62 (300)
Q Consensus 32 eL~Sk~l~ie~KrFYlDlKeN~RGRFLKIaE 62 (300)
=+....+....|.++|-...|- +|.+|..
T Consensus 234 f~~n~V~T~~TR~~~l~~~n~h--~Yk~~~~ 262 (736)
T 3ng9_A 234 WLGDRVITTSTRTWALPTYNNH--LYKQISS 262 (736)
T ss_dssp ECSSEEEEEEEEEEEEECCGGG--CCEEEEC
T ss_pred ECCCEEEEeeeeEEEecCCCCc--eeeeecc
Confidence 4556788889999999999988 7888875
No 9
>1k3v_A Capsid protein VP2; icosahadral, beta sheet, icosahedral virus; 3.50A {Porcine parvovirus} SCOP: b.121.5.2
Probab=45.36 E-value=21 Score=36.51 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=20.7
Q ss_pred eeeeeeeceeEEEeccCCCCcceEEEEEe
Q 022261 35 CKTLQVEHKLFYFDLKENPRGRYLKISEK 63 (300)
Q Consensus 35 Sk~l~ie~KrFYlDlKeN~RGRFLKIaE~ 63 (300)
.+.+....|+++|.+... -.|.+|...
T Consensus 60 ~~vtt~~TR~~~l~~~~~--h~Y~~i~~~ 86 (579)
T 1k3v_A 60 VRITAHASRLIHLNMPEH--ETYKRIHVL 86 (579)
T ss_dssp EEEEEEEEEEEEEECCSC--CSCEEEEEC
T ss_pred eEEEEEeeeEEEecCCCC--CceeEEecc
Confidence 346667799999988877 488888753
No 10
>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}
Probab=43.66 E-value=35 Score=29.32 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=40.6
Q ss_pred cceEEEEcCCCCceeEEEEeeecC-----------------CCCceeEechhhHHHHHHHHHHHHHHHHhhhc
Q 022261 230 QKRFFFDLGSNNRGHFLRISEVTG-----------------SDRSSIILPLSGLKQFHEIVGHFVEITKDRIE 285 (300)
Q Consensus 230 nKrFyFDlg~N~RG~FLRISEv~g-----------------~~RssI~IP~~~~~~F~d~l~~~~d~m~~~~~ 285 (300)
+.-.||+|+.|+| +.|++.+| .-+-=|.|+..-|..|.+++.++-+.++.+-.
T Consensus 44 ~g~~~~~Ls~~rr---vtV~~fkG~~~vdIREyY~k~G~~~PgkKGISLs~~qw~~L~~~~~~I~~ai~~~g~ 113 (158)
T 4agh_A 44 EGNPFWEISDKRR---VGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTAFLKAIPAINAELRSRGH 113 (158)
T ss_dssp TSCEEEESSSSEE---EEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEeEEcCCCcE---EEEEeeCCCEEEEeEeEEcCCCcCCCcccceecCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4557999987754 66666554 23456889999999999999999999987743
No 11
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=43.48 E-value=32 Score=25.46 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCceeEechhhHHHHHHHHHHHHHHHHh
Q 022261 255 DRSSIILPLSGLKQFHEIVGHFVEITKD 282 (300)
Q Consensus 255 ~RssI~IP~~~~~~F~d~l~~~~d~m~~ 282 (300)
.+-=|.++...|.++.+++.++-+.+++
T Consensus 38 gkKGIsL~~~qw~~l~~~~~~I~~ai~~ 65 (66)
T 1pcf_A 38 GRKGISLNPEQWSQLKEQISDIDDAVRK 65 (66)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHh
Confidence 3456999999999999999998887764
No 12
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.90 E-value=13 Score=34.12 Aligned_cols=9 Identities=33% Similarity=0.272 Sum_probs=0.0
Q ss_pred CCCCcccee
Q 022261 26 GGGNDVELV 34 (300)
Q Consensus 26 ~~~~~~eL~ 34 (300)
+...|-||+
T Consensus 221 dp~~dpela 229 (268)
T 4b4t_W 221 DPSMDPELA 229 (268)
T ss_dssp ---------
T ss_pred CCCCCHHHH
Confidence 445566775
No 13
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus pneumoniae}
Probab=26.96 E-value=77 Score=24.12 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=12.8
Q ss_pred cceeeeeeeeeceeEEEec
Q 022261 31 VELVCKTLQVEHKLFYFDL 49 (300)
Q Consensus 31 ~eL~Sk~l~ie~KrFYlDl 49 (300)
...++.=+++.++.||+|-
T Consensus 12 ~~~~~~W~~~~g~WYy~~~ 30 (94)
T 3hia_A 12 VAPTTGWKQENGMWYFYNT 30 (94)
T ss_dssp --CCCEEEEETTEEEEECT
T ss_pred ccccCCeEEECCEEEEECC
Confidence 3455666778888888874
No 14
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=26.47 E-value=55 Score=22.48 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=16.0
Q ss_pred ccCCCCCcccccCCcccceeEeeccceEEEEcC
Q 022261 206 DRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLG 238 (300)
Q Consensus 206 ~~~~~lP~~~~~~~~~~s~~irvdnKrFyFDlg 238 (300)
++..+||+.=+ ..+..+.+.||+|-.
T Consensus 7 ~~~~~LP~gWe-------~~~~~~Gr~Yy~nh~ 32 (50)
T 1i5h_W 7 NDLGPLPPGWE-------ERTHTDGRVFFINHN 32 (50)
T ss_dssp SCCSSCSTTEE-------EEECTTSCEEEEETT
T ss_pred ccCCCCCcCcE-------EEEcCCCCEEEEECC
Confidence 44557888532 233356788999843
No 15
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=23.30 E-value=80 Score=22.37 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=15.5
Q ss_pred ccCCCCCcccccCCcccceeEeeccceEEEEc
Q 022261 206 DRSVDLPAQDEIGNMGVSKVIRADQKRFFFDL 237 (300)
Q Consensus 206 ~~~~~lP~~~~~~~~~~s~~irvdnKrFyFDl 237 (300)
+...+||..=+ ..+..+.+.||+|-
T Consensus 10 ~~~~~LP~GWe-------~~~~~~Gr~Yyinh 34 (57)
T 2ysd_A 10 DNLGPLPENWE-------MAYTENGEVYFIDH 34 (57)
T ss_dssp SCCCSCCSSEE-------EEECSSCCEEEEET
T ss_pred CCCCCCCcCcE-------EEECCCCCEEEEEC
Confidence 33457888543 22334688899984
Done!