Query 022261
Match_columns 300
No_of_seqs 127 out of 160
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 16:32:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022261.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022261hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pcfa_ d.18.1.1 (A:) Transcri 64.5 4.6 0.00033 28.3 4.7 28 255-282 38-65 (66)
2 d1i5hw_ b.72.1.1 (W:) Ubiquiti 30.7 20 0.0014 23.5 3.1 27 206-239 7-33 (50)
3 d1h8ga_ b.109.1.1 (A:) Choline 25.5 36 0.0026 24.1 4.1 20 30-49 11-30 (95)
4 d1emsa1 d.13.1.1 (A:281-440) N 23.0 1E+02 0.0073 23.6 6.7 59 223-283 29-88 (160)
5 d2ba0a1 b.40.4.5 (A:53-135) S1 18.6 39 0.0028 22.9 2.9 34 219-253 7-40 (83)
6 d1tk7a1 b.72.1.1 (A:1-45) Supp 17.9 58 0.0043 20.6 3.5 23 210-239 12-34 (45)
7 d2e3ha1 b.34.10.1 (A:212-282) 17.6 14 0.001 25.8 0.2 23 228-252 46-68 (71)
8 d2bj7a1 a.43.1.3 (A:1-50) Nick 17.5 36 0.0026 22.3 2.3 20 255-274 4-23 (50)
9 d2hzaa1 a.43.1.3 (A:1-48) Nick 17.3 37 0.0027 22.0 2.3 19 256-274 3-21 (48)
10 d2j8ga1 b.109.1.1 (A:191-339) 15.5 71 0.0052 23.7 4.1 17 95-111 69-85 (149)
No 1
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.51 E-value=4.6 Score=28.31 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=23.7
Q ss_pred CCceeEechhhHHHHHHHHHHHHHHHHh
Q 022261 255 DRSSIILPLSGLKQFHEIVGHFVEITKD 282 (300)
Q Consensus 255 ~RssI~IP~~~~~~F~d~l~~~~d~m~~ 282 (300)
.+-=|.++...|.++.+++.++-+.+++
T Consensus 38 gkKGIsL~~~qw~~l~~~~~~i~~ai~~ 65 (66)
T d1pcfa_ 38 GRKGISLNPEQWSQLKEQISDIDDAVRK 65 (66)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEECHHHHHHHHHHHHHHHHHHHh
Confidence 3456999999999999999998888765
No 2
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=30.71 E-value=20 Score=23.51 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=17.9
Q ss_pred ccCCCCCcccccCCcccceeEeeccceEEEEcCC
Q 022261 206 DRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGS 239 (300)
Q Consensus 206 ~~~~~lP~~~~~~~~~~s~~irvdnKrFyFDlg~ 239 (300)
+...+||.+=+ +.+..+.+.||+|...
T Consensus 7 ~~~~pLP~gWe-------~~~~~~G~~YY~nh~t 33 (50)
T d1i5hw_ 7 NDLGPLPPGWE-------ERTHTDGRVFFINHNI 33 (50)
T ss_dssp SCCSSCSTTEE-------EEECTTSCEEEEETTT
T ss_pred CCCCCCCCCce-------EEECCCCCEEEEECCC
Confidence 33447998643 4556678889999543
No 3
>d1h8ga_ b.109.1.1 (A:) Choline binding domain of autolysin C-LytA {Streptococcus pneumoniae [TaxId: 1313]}
Probab=25.55 E-value=36 Score=24.07 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=14.5
Q ss_pred ccceeeeeeeeeceeEEEec
Q 022261 30 DVELVCKTLQVEHKLFYFDL 49 (300)
Q Consensus 30 ~~eL~Sk~l~ie~KrFYlDl 49 (300)
++.+++--+.|..+.||+|-
T Consensus 11 ~G~~~tGw~~i~g~wYyfd~ 30 (95)
T d1h8ga_ 11 SGEMATGWKKIADKWYYFNE 30 (95)
T ss_dssp TCCBCCEEEEETTEEEEECT
T ss_pred CCCEEEeeEEECCEEEEECC
Confidence 45566777788888888873
No 4
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=22.96 E-value=1e+02 Score=23.55 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=42.6
Q ss_pred ceeEeeccceE-EEEcCCCCceeEEEEeeecCCCCceeEechhhHHHHHHHHHHHHHHHHhh
Q 022261 223 SKVIRADQKRF-FFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQFHEIVGHFVEITKDR 283 (300)
Q Consensus 223 s~~irvdnKrF-yFDlg~N~RG~FLRISEv~g~~RssI~IP~~~~~~F~d~l~~~~d~m~~~ 283 (300)
.++|--|.+.+ |+|+.-...|++|=|.- ....+---+|..-+.++..++.++...++..
T Consensus 29 ~~ii~ede~~~af~Di~P~~pgH~LVIPK--~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~ 88 (160)
T d1emsa1 29 DHIFYSTPHSFVFVNLKPVTDGHVLVSPK--RVVPRLTDLTDAETADLFIVAKKVQAMLEKH 88 (160)
T ss_dssp GGEEEECSSEEEEECSSCSSTTCEEEEES--SCCSCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCEEEEECCCCCCCCeEEEEEe--cccchhhhhhhHHHHHHHHHHHHhhhhhhhc
Confidence 35666666664 89999999999999852 2233334477888888888888877777654
No 5
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=18.57 E-value=39 Score=22.91 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=28.7
Q ss_pred CcccceeEeeccceEEEEcCCCCceeEEEEeeecC
Q 022261 219 NMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTG 253 (300)
Q Consensus 219 ~~~~s~~irvdnKrFyFDlg~N~RG~FLRISEv~g 253 (300)
.....++..+.+.-+|.|++.+-.| ||.+||...
T Consensus 7 d~V~G~V~~v~~~g~~V~i~~~~~g-~l~~se~s~ 40 (83)
T d2ba0a1 7 DVVIGIIREVAANGWAVDIYSPYQA-FLPVSENPE 40 (83)
T ss_dssp CEEEEEEEEECSSEEEEECSSSSCE-EEEGGGCTT
T ss_pred CEEEEEEEEEECCEEEEecCCCeeE-EEecccccc
Confidence 3445789999999999999998888 999999863
No 6
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=17.90 E-value=58 Score=20.61 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=16.3
Q ss_pred CCCcccccCCcccceeEeeccceEEEEcCC
Q 022261 210 DLPAQDEIGNMGVSKVIRADQKRFFFDLGS 239 (300)
Q Consensus 210 ~lP~~~~~~~~~~s~~irvdnKrFyFDlg~ 239 (300)
+||.+=+ +.+..+.+.||+|-..
T Consensus 12 pLP~GWe-------~~~d~~G~~Yyinh~t 34 (45)
T d1tk7a1 12 PLPDGWE-------KKIQSDNRVYFVNHKN 34 (45)
T ss_dssp SSSSSCC-------EEEETTTEEEEEETTT
T ss_pred CCCCCce-------EEECCCCCEEEEECCC
Confidence 7888643 5566778899998543
No 7
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.59 E-value=14 Score=25.81 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=16.8
Q ss_pred eccceEEEEcCCCCceeEEEEeeec
Q 022261 228 ADQKRFFFDLGSNNRGHFLRISEVT 252 (300)
Q Consensus 228 vdnKrFyFDlg~N~RG~FLRISEv~ 252 (300)
++.++ ||++.. ++|.|++.+.|+
T Consensus 46 ~~G~~-YF~c~~-~~G~Fv~~~kv~ 68 (71)
T d2e3ha1 46 VAGTR-YFQCQP-KYGLFAPVHKVT 68 (71)
T ss_dssp ETTEE-SCCCCT-TCEEEEEGGGEE
T ss_pred ECCEE-EEecCC-CCEEEeCHHHcE
Confidence 34444 678884 599999988764
No 8
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=17.50 E-value=36 Score=22.33 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=15.8
Q ss_pred CCceeEechhhHHHHHHHHH
Q 022261 255 DRSSIILPLSGLKQFHEIVG 274 (300)
Q Consensus 255 ~RssI~IP~~~~~~F~d~l~ 274 (300)
.|.+|+||.+-+.+|-+.+.
T Consensus 4 ~Risvslp~~Ll~~lD~~v~ 23 (50)
T d2bj7a1 4 IRFSISIPSKLLEKFDQIIE 23 (50)
T ss_dssp EEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHH
Confidence 47899999998888766554
No 9
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.28 E-value=37 Score=22.04 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.1
Q ss_pred CceeEechhhHHHHHHHHH
Q 022261 256 RSSIILPLSGLKQFHEIVG 274 (300)
Q Consensus 256 RssI~IP~~~~~~F~d~l~ 274 (300)
|.+|+||.+-+.+|-+.+.
T Consensus 3 RisVslp~~Ll~~lD~~v~ 21 (48)
T d2hzaa1 3 RVTITLDDDLLETLDSLSQ 21 (48)
T ss_dssp EEEEEECHHHHHHHHHHHH
T ss_pred eEEEecCHHHHHHHHHHHH
Confidence 6799999998888765554
No 10
>d2j8ga1 b.109.1.1 (A:191-339) C-terminal domain of endolysin {Bacteriophage cp-1 [TaxId: 10747]}
Probab=15.49 E-value=71 Score=23.70 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=11.4
Q ss_pred cccccceecccceEEEe
Q 022261 95 ELFSKELQLDSKVFYFD 111 (300)
Q Consensus 95 ~~~s~~l~vdnKrFYfD 111 (300)
......+.++++.||||
T Consensus 69 ~~~~g~~~~~g~~Yyf~ 85 (149)
T d2j8ga1 69 AMATGWVLVGSEWYYMD 85 (149)
T ss_dssp CBCCEEEEETTEEEEEC
T ss_pred ccccceeeeccceEEEC
Confidence 34455566777888887
Done!