BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022262
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGP|A Chain A, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|B Chain B, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|C Chain C, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|D Chain D, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|E Chain E, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|F Chain F, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
Length = 393
Score = 513 bits (1320), Expect = e-146, Method: Compositional matrix adjust.
Identities = 238/297 (80%), Positives = 267/297 (89%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
QCAGNRRTAMS VR V+GVGWDVSAIGNAVW GAKLADVLELVGIP LT+ T G +HVE
Sbjct: 97 QCAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVE 156
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
FVS+D+CKEENGGPYKASI LSQATNPEADVLLAYEMNGE LNRDHG+PLRVVVPGVIGA
Sbjct: 157 FVSVDRCKEENGGPYKASITLSQATNPEADVLLAYEMNGETLNRDHGFPLRVVVPGVIGA 216
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDV 183
RSVKWLD+IN++AEE QGFFMQKDYKMFPPSVNWDNINW SRRP MDFPVQ ICS+EDV
Sbjct: 217 RSVKWLDSINVIAEESQGFFMQKDYKMFPPSVNWDNINWSSRRPQMDFPVQSAICSVEDV 276
Query: 184 NVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 243
++KPGK + GYAVSGGGRGIERVDIS+DGGKNWVEASR Q+ G YI++H SSDKWAW
Sbjct: 277 QMVKPGKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAW 336
Query: 244 VFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGHSNM 300
V FE ID+ +T+++AKAVD+AANVQPE+VE++WNLRGVLNTSWHRV +R+GHSN+
Sbjct: 337 VLFEATIDVSQTTEVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLRLGHSNL 393
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 182/294 (61%), Gaps = 15/294 (5%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
QCAGNRR+ MS VR VKG+ WD+ AI A W GA+L DVL G P G HV
Sbjct: 184 QCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPE----ELQGEWHVC 239
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + G PY ASIP +A +P ADVLLAYEMNG L RDHG+P+RVVVPGV+GA
Sbjct: 240 FEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGA 297
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDV 183
RSVKWL + + +E + Q DYK F P V+WD +++++ + + PVQ +
Sbjct: 298 RSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPG 357
Query: 184 NVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 243
+ PG+ V GYA SGGGR + RVD+S+DGG+ W A P A WAW
Sbjct: 358 AAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRA-------WAW 410
Query: 244 VFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 295
+E+ + + T +IV KAVD++ NVQP+SV IWNLRGVL+T+WHRV+V V
Sbjct: 411 ALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464
>pdb|2A9B|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Sulfite
Oxidase At Resting State
pdb|2A9C|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Chicken
Sulfite Oxidase With The Bound Product, Sulfate, At The
Active Site
pdb|2A9C|B Chain B, Crystal Structure Of R138q Mutant Of Recombinant Chicken
Sulfite Oxidase With The Bound Product, Sulfate, At The
Active Site
Length = 372
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 182/294 (61%), Gaps = 15/294 (5%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
QCAGNRR+ MS VR VKG+ WD+ AI A W GA+L DVL G P G HV
Sbjct: 90 QCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPE----ELQGEWHVC 145
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + G PY ASIP +A +P ADVLLAYEMNG L RDHG+P+RVVVPGV+GA
Sbjct: 146 FEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGA 203
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDV 183
RSVKWL + + +E + Q DYK F P V+WD +++++ + + PVQ +
Sbjct: 204 RSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPG 263
Query: 184 NVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 243
+ PG+ V GYA SGGGR + RVD+S+DGG+ W A P A WAW
Sbjct: 264 AAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRA-------WAW 316
Query: 244 VFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 295
+E+ + + T +IV KAVD++ NVQP+SV IWNLRGVL+T+WHRV+V V
Sbjct: 317 ALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 370
>pdb|2A99|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
At Resting State
pdb|2A9A|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With The Bound Product, Sulfate, At The Active Site
pdb|2A9A|B Chain B, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With The Bound Product, Sulfate, At The Active Site
Length = 372
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 182/294 (61%), Gaps = 15/294 (5%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
QCAGNRR+ MS VR VKG+ WD+ AI A W GA+L DVL G P G HV
Sbjct: 90 QCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPE----ELQGEWHVC 145
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + G PY ASIP +A +P ADVLLAYEMNG L RDHG+P+RVVVPGV+GA
Sbjct: 146 FEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGA 203
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDV 183
RSVKWL + + +E + Q DYK F P V+WD +++++ + + PVQ +
Sbjct: 204 RSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPG 263
Query: 184 NVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 243
+ PG+ V GYA SGGGR + RVD+S+DGG+ W A P A WAW
Sbjct: 264 AAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRA-------WAW 316
Query: 244 VFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 295
+E+ + + T +IV KAVD++ NVQP+SV IWNLRGVL+T+WHRV+V V
Sbjct: 317 ALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 370
>pdb|2A9D|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With Arg At Residue 161
pdb|2A9D|B Chain B, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With Arg At Residue 161
Length = 372
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 182/294 (61%), Gaps = 15/294 (5%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
QCAGNRR+ MS VR VKG+ WD+ AI A W GA+L DVL G P G HV
Sbjct: 90 QCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPE----ELQGEWHVC 145
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + G PY ASIP +A +P ADVLLAYEMNG L RDHG+P+RVVVPGV+GA
Sbjct: 146 FEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGA 203
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDV 183
RSVKWL + + +E + Q DYK F P V+WD +++++ + + PVQ +
Sbjct: 204 RSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPG 263
Query: 184 NVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 243
+ PG+ V GYA SGGGR + RVD+S+DGG+ W A P A WAW
Sbjct: 264 AAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRA-------WAW 316
Query: 244 VFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 295
+E+ + + T +IV KAVD++ NVQP+SV IWNLRGVL+T+WHRV+V V
Sbjct: 317 ALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 370
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/294 (47%), Positives = 182/294 (61%), Gaps = 15/294 (5%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
QCAGNRR+ MS VR VKG+ WD+ AI A W GA+L DVL G P G HV
Sbjct: 184 QCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPE----ELQGEWHVC 239
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + G PY ASIP +A +P ADVLLAYEMNG L RDHG+P+RVVVPGV+GA
Sbjct: 240 FEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGA 297
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDV 183
RSVKWL + + +E + Q D+K F P V+WD +++++ + + PVQ +
Sbjct: 298 RSVKWLRRVAVSPDESPSHWQQNDFKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPG 357
Query: 184 NVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 243
+ PG+ V GYA SGGGR + RVD+S+DGG+ W A P A WAW
Sbjct: 358 AAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRA-------WAW 410
Query: 244 VFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 295
+E+ + + T +IV KAVD++ NVQP+SV IWNLRGVL+T+WHRV+V V
Sbjct: 411 ALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 238 bits (606), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/294 (47%), Positives = 181/294 (61%), Gaps = 15/294 (5%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
Q AGNRR+ MS VR VKG+ WD+ AI A W GA+L DVL G P G HV
Sbjct: 184 QAAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPE----ELQGEWHVC 239
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + G PY ASIP +A +P ADVLLAYEMNG L RDHG+P+RVVVPGV+GA
Sbjct: 240 FEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGA 297
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDV 183
RSVKWL + + +E + Q DYK F P V+WD +++++ + + PVQ +
Sbjct: 298 RSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPG 357
Query: 184 NVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 243
+ PG+ V GYA SGGGR + RVD+S+DGG+ W A P A WAW
Sbjct: 358 AAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRA-------WAW 410
Query: 244 VFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 295
+E+ + + T +IV KAVD++ NVQP+SV IWNLRGVL+T+WHRV+V V
Sbjct: 411 ALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 237 bits (605), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/294 (47%), Positives = 181/294 (61%), Gaps = 15/294 (5%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
Q AGNRR+ MS VR VKG+ WD+ AI A W GA+L DVL G P G HV
Sbjct: 184 QSAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPE----ELQGEWHVC 239
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + G PY ASIP +A +P ADVLLAYEMNG L RDHG+P+RVVVPGV+GA
Sbjct: 240 FEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGA 297
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDV 183
RSVKWL + + +E + Q DYK F P V+WD +++++ + + PVQ +
Sbjct: 298 RSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPG 357
Query: 184 NVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 243
+ PG+ V GYA SGGGR + RVD+S+DGG+ W A P A WAW
Sbjct: 358 AAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRA-------WAW 410
Query: 244 VFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 295
+E+ + + T +IV KAVD++ NVQP+SV IWNLRGVL+T+WHRV+V V
Sbjct: 411 ALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 234 bits (597), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 139/294 (47%), Positives = 180/294 (61%), Gaps = 15/294 (5%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
QCAGNRR+ MS VR VKG+ WD+ AI A W GA+L DVL G P G HV
Sbjct: 184 QCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPE----ELQGEWHVC 239
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + G PY ASIP +A +P ADVLLAYEMNG L RDHG+P+RVVVPGV+GA
Sbjct: 240 FEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGA 297
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDV 183
RSVKWL + + +E + Q D K F P V+WD +++++ + + PVQ +
Sbjct: 298 RSVKWLRRVAVSPDESPSHWQQNDNKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPG 357
Query: 184 NVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 243
+ PG+ V GYA SGGGR + RVD+S+DGG+ W A P A WAW
Sbjct: 358 AAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRA-------WAW 410
Query: 244 VFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 295
+E+ + + T +IV KAVD++ NVQP+SV IWNL GVL+T+WHRV+V V
Sbjct: 411 ALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLMGVLSTAWHRVRVSV 464
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 233 bits (595), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 138/294 (46%), Positives = 180/294 (61%), Gaps = 15/294 (5%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
QCAGNRR+ MS VR VKG+ WD+ AI A W GA+L DVL G P G HV
Sbjct: 184 QCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPE----ELQGEWHVC 239
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + G PY ASIP +A +P ADVLLAYEMNG L RDHG+P+RVVVPGV+GA
Sbjct: 240 FEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGA 297
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDV 183
RSVKWL + + +E + Q D K F P V+WD +++++ + + PVQ +
Sbjct: 298 RSVKWLRRVAVSPDESPSHWQQNDNKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPG 357
Query: 184 NVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 243
+ PG+ V GYA SGGGR + RVD+S+DGG+ W A P A WAW
Sbjct: 358 AAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRA-------WAW 410
Query: 244 VFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 295
+E+ + + T +IV KAVD++ NVQP+SV IWNL G+L+T+WHRV+V V
Sbjct: 411 ALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLMGMLSTAWHRVRVSV 464
>pdb|2BII|A Chain A, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
pdb|2BII|B Chain B, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
Length = 424
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 155/317 (48%), Gaps = 35/317 (11%)
Query: 5 CAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEF 64
CAGNRR + V+ G W + ++W+G L DV+ K F
Sbjct: 79 CAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIG----------KARPSKRARF 128
Query: 65 VSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGAR 124
V ++ G Y I LS +PE +++AY+ NGE L+ DHG PLRVV+PGVIG R
Sbjct: 129 VWMEGADNPANGAYGTCIRLSWCMDPERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGR 188
Query: 125 SVKWLDTINILAEECQGFFMQKDYKMFPPSVN-----WDNINWKSRR-PLMDFPVQCVIC 178
SVKWL + + + ++ D ++ P V D+ WK R + D +Q +IC
Sbjct: 189 SVKWLKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIIC 248
Query: 179 SLEDVNVMK--PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEA------SRYQKT--- 227
E+ V+K + +++G+ +GGG I R+++S+D GK+W A RY++
Sbjct: 249 KPENQQVIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYF 308
Query: 228 ----GIPYIADHMSSDKWA-WVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRG 282
G+ + D MS W W + ++ S I+ + +D VQP ++ WN+
Sbjct: 309 RLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGMDERMMVQPRTM--YWNVTS 366
Query: 283 VLNTSWHRVQ-VRVGHS 298
+LN W+RV +R G S
Sbjct: 367 MLNNWWYRVAIIREGES 383
>pdb|2BIH|A Chain A, Crystal Structure Of The Molybdenum-containing Nitrate
Reducing Fragment Of Pichia Angusta Assimilatory Nitrate
Reductase
Length = 474
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 155/317 (48%), Gaps = 35/317 (11%)
Query: 5 CAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEF 64
CAGNRR + V+ G W + ++W+G L DV+ K F
Sbjct: 129 CAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIG----------KARPSKRARF 178
Query: 65 VSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGAR 124
V ++ G Y I LS +PE +++AY+ NGE L+ DHG PLRVV+PGVIG R
Sbjct: 179 VWMEGADNPANGAYGTCIRLSWCMDPERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGR 238
Query: 125 SVKWLDTINILAEECQGFFMQKDYKMFPPSVN-----WDNINWKSRR-PLMDFPVQCVIC 178
SVKWL + + + ++ D ++ P V D+ WK R + D +Q +IC
Sbjct: 239 SVKWLKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIIC 298
Query: 179 SLEDVNVMK--PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEA------SRYQKT--- 227
E+ V+K + +++G+ +GGG I R+++S+D GK+W A RY++
Sbjct: 299 KPENQQVIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYF 358
Query: 228 ----GIPYIADHMSSDKWA-WVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRG 282
G+ + D MS W W + ++ S I+ + +D VQP ++ WN+
Sbjct: 359 RLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGMDERMMVQPRTM--YWNVTS 416
Query: 283 VLNTSWHRVQ-VRVGHS 298
+LN W+RV +R G S
Sbjct: 417 MLNNWWYRVAIIREGES 433
>pdb|2BLF|A Chain A, Sulfite Dehydrogenase From Starkeya Novella
pdb|2BPB|A Chain A, Sulfite Dehydrogenase From Starkeya Novella
Length = 373
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 135/285 (47%), Gaps = 30/285 (10%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
QC+GN R + V G A+GNA W G L VLE G+ ++G K V
Sbjct: 103 QCSGNSRGFVEP--RVGGGQLANGAMGNARWRGVPLKAVLEKAGV-------QAGAKQVT 153
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + ++ + AT + +V+LAY MNG L +GYPLR+VVPG G
Sbjct: 154 FGGLDGPVIPETPDFVKALSIDHAT--DGEVMLAYSMNGADLPWLNGYPLRLVVPGYYGT 211
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR---PLMDFPVQCVICSL 180
VK L+ I ++ +E GF+M+ Y++ P + K+ P+ F V+ I ++
Sbjct: 212 YWVKHLNEITVIDKEFDGFWMKTAYRI-PDNACACTEPGKAPTATIPINRFDVRSFITNV 270
Query: 181 EDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDK 240
E+ +K G+ + G A GG GI +V +S D GK+W A+ G K
Sbjct: 271 ENGASVKAGEVPLRGIAFD-GGYGITQVSVSADAGKSWTNATLDPGLG-----------K 318
Query: 241 WAWVFFEVIIDIPHSTQIV-AKAVDTAANVQPESVETIWNLRGVL 284
+++ ++ ++ + ++ +A + QP ++ WN G +
Sbjct: 319 YSFRGWKAVLPLTKGDHVLMCRATNARGETQP--MQATWNPAGYM 361
>pdb|2CA3|A Chain A, Sulfite Dehydrogenase From Starkeya Novella R55m Mutant
Length = 373
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 135/285 (47%), Gaps = 30/285 (10%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
QC+GN R + V G A+GNA W G L VLE G+ ++G K V
Sbjct: 103 QCSGNSRGFVEP--RVGGGQLANGAMGNARWRGVPLKAVLEKAGV-------QAGAKQVT 153
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + ++ + AT+ E V+LAY MNG L +GYPLR+VVPG G
Sbjct: 154 FGGLDGPVIPETPDFVKALSIDHATDGE--VMLAYSMNGADLPWLNGYPLRLVVPGYYGT 211
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR---PLMDFPVQCVICSL 180
VK L+ I ++ +E GF+M+ Y++ P + K+ P+ F V+ I ++
Sbjct: 212 YWVKHLNEITVIDKEFDGFWMKTAYRI-PDNACACTEPGKAPTATIPINRFDVRSFITNV 270
Query: 181 EDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDK 240
E+ +K G+ + G A GG GI +V +S D GK+W A+ G K
Sbjct: 271 ENGASVKAGEVPLRGIAFD-GGYGITQVSVSADAGKSWTNATLDPGLG-----------K 318
Query: 241 WAWVFFEVIIDIPHSTQIV-AKAVDTAANVQPESVETIWNLRGVL 284
+++ ++ ++ + ++ +A + QP ++ WN G +
Sbjct: 319 YSFRGWKAVLPLTKGDHVLMCRATNARGETQP--MQATWNPAGYM 361
>pdb|2CA4|A Chain A, Sulfite Dehydrogenase From Starkeya Novella Mutant
Length = 373
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 135/285 (47%), Gaps = 30/285 (10%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
QC+GN R + V G A+GNA W G L VLE G+ ++G K V
Sbjct: 103 QCSGNSRGFVEP--RVGGGQLANGAMGNARWRGVPLKAVLEKAGV-------QAGAKQVT 153
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + ++ + AT+ E V+LAY MNG L +GYPLR+VVPG G
Sbjct: 154 FGGLDGPVIPETPDFVKALSIDHATDGE--VMLAYSMNGADLPWLNGYPLRLVVPGYYGT 211
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR---PLMDFPVQCVICSL 180
VK L+ I ++ +E GF+M+ Y++ P + K+ P+ F V+ I ++
Sbjct: 212 YWVKHLNEITVIDKEFDGFWMKTAYRI-PDNACACTEPGKAPTATIPINRFDVRSFITNV 270
Query: 181 EDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDK 240
E+ +K G+ + G A GG GI +V +S D GK+W A+ G K
Sbjct: 271 ENGASVKAGEVPLRGIAFD-GGYGITQVSVSADAGKSWTNATLDPGLG-----------K 318
Query: 241 WAWVFFEVIIDIPHSTQIV-AKAVDTAANVQPESVETIWNLRGVL 284
+++ ++ ++ + ++ +A + QP ++ WN G +
Sbjct: 319 YSFRGWKAVLPLTKGDHVLMCRATNARGETQP--MQATWNPAGYM 361
>pdb|2C9X|A Chain A, Sulfite Dehydrogenase From Starkeya Novella Y236f Mutant
Length = 373
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 135/285 (47%), Gaps = 30/285 (10%)
Query: 4 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVE 63
QC+GN R + V G A+GNA W G L VLE G+ ++G K V
Sbjct: 103 QCSGNSRGFVEP--RVGGGQLANGAMGNARWRGVPLKAVLEKAGV-------QAGAKQVT 153
Query: 64 FVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGA 123
F +D + ++ + AT + +V+LAY MNG L +GYPLR+VVPG G
Sbjct: 154 FGGLDGPVIPETPDFVKALSIDHAT--DGEVMLAYSMNGADLPWLNGYPLRLVVPGYYGT 211
Query: 124 RSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR---PLMDFPVQCVICSL 180
VK L+ I ++ +E GF+M+ +++ P + K+ P+ F V+ I ++
Sbjct: 212 YWVKHLNEITVIDKEFDGFWMKTAFRI-PDNACACTEPGKAPTATIPINRFDVRSFITNV 270
Query: 181 EDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDK 240
E+ +K G+ + G A GG GI +V +S D GK+W A+ G K
Sbjct: 271 ENGASVKAGEVPLRGIAFD-GGYGITQVSVSADAGKSWTNATLDPGLG-----------K 318
Query: 241 WAWVFFEVIIDIPHSTQIV-AKAVDTAANVQPESVETIWNLRGVL 284
+++ ++ ++ + ++ +A + QP ++ WN G +
Sbjct: 319 YSFRGWKAVLPLTKGDHVLMCRATNARGETQP--MQATWNPAGYM 361
>pdb|2XTS|A Chain A, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From
Paracoccus Pantotrophus
pdb|2XTS|C Chain C, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From
Paracoccus Pantotrophus
Length = 390
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 118/268 (44%), Gaps = 38/268 (14%)
Query: 17 RTVKGVGWDVSAIGNAVWSGAKLADV---------LELVGIPNLTSVTRSGGK-HVEFVS 66
RT + +A G W GA+L +E VG+P + +G K +++
Sbjct: 111 RTTTTAFCECAANGGMEWGGAQLEGCQYTQGMIHNMEYVGVPLSVLLAEAGVKPEGKWLY 170
Query: 67 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSV 126
+ + G S P+ + + DV+LA+ NGE L ++HGYP R+VVPG G V
Sbjct: 171 AEGADASSNG---RSFPMEKVMD---DVMLAFFANGEALRKEHGYPARLVVPGWEGNMWV 224
Query: 127 KWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVM 186
KW+ + I + + Y P W +MD + VI S +
Sbjct: 225 KWVRRLGIYDKAVESREETSKYTDLMPDGRARKWTW-----VMD--AKSVITSPSPQVPI 277
Query: 187 KPGKAK--VSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWV 244
+ GK +SG A SG GR I RVD+S+DGGKNW A R +P A
Sbjct: 278 RHGKGPLVISGLAWSGNGR-ITRVDVSLDGGKNWTTA-RITGQALPK----------ALT 325
Query: 245 FFEVIIDIPHSTQIV-AKAVDTAANVQP 271
F + ID S ++ ++AVD VQP
Sbjct: 326 RFHLDIDWDGSEMLLQSRAVDETGYVQP 353
>pdb|1QPR|A Chain A, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|B Chain B, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|C Chain C, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|D Chain D, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|E Chain E, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|F Chain F, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPN|A Chain A, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|B Chain B, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|C Chain C, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|D Chain D, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|E Chain E, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|F Chain F, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPO|A Chain A, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|B Chain B, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|C Chain C, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|D Chain D, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|E Chain E, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|F Chain F, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPQ|A Chain A, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|B Chain B, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|C Chain C, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|D Chain D, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|E Chain E, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|F Chain F, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
Length = 284
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 170 DFPVQCVICSLEDVNVMKPGKAKV---SGYAVSGGGRGIERVD-------ISVDGGKNWV 219
D P + + SLE ++ + P K ++ +AV ++R D + GG +
Sbjct: 194 DLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQ 253
Query: 220 EASRYQKTGIPYIA 233
A+ Y +TG+ Y+A
Sbjct: 254 TAATYAETGVDYLA 267
>pdb|1XDQ|A Chain A, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|B Chain B, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|C Chain C, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|D Chain D, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|E Chain E, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDY|A Chain A, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|B Chain B, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|C Chain C, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|D Chain D, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|E Chain E, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|F Chain F, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|G Chain G, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|H Chain H, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|I Chain I, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|J Chain J, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
Length = 298
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 34 WSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGG-----------PYKASI 82
W G L +L L + S K+V F +I ++ G PY +
Sbjct: 112 WIGFPLHKLLAL-------AEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGL 164
Query: 83 PLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAE 137
L +A +P L+ + G+ L +G P+R++VP G + +K + +I + E
Sbjct: 165 RLDEAMHPL--TLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRE 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,748,567
Number of Sequences: 62578
Number of extensions: 406373
Number of successful extensions: 1203
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1144
Number of HSP's gapped (non-prelim): 26
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)