Query 022262
Match_columns 300
No_of_seqs 215 out of 1672
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0535 Sulfite oxidase, molyb 100.0 7.4E-93 1.6E-97 647.6 17.2 285 1-297 92-381 (381)
2 PLN00177 sulfite oxidase; Prov 100.0 6.4E-88 1.4E-92 651.7 31.9 300 1-300 94-393 (393)
3 cd02111 eukary_SO_Moco molybdo 100.0 2.4E-82 5.2E-87 608.7 29.6 285 1-295 76-365 (365)
4 cd02112 eukary_NR_Moco molybdo 100.0 1.1E-81 2.4E-86 607.4 29.9 282 1-293 91-386 (386)
5 cd02114 bact_SorA_Moco sulfite 100.0 5.1E-79 1.1E-83 586.1 29.5 268 1-293 95-367 (367)
6 PLN02252 nitrate reductase [NA 100.0 8.3E-79 1.8E-83 637.6 30.5 286 1-297 163-462 (888)
7 cd02110 SO_family_Moco_dimer S 100.0 6.6E-77 1.4E-81 562.6 28.3 269 1-293 47-317 (317)
8 cd02113 bact_SoxC_Moco bacteri 100.0 2.8E-76 6.1E-81 558.3 28.2 259 1-296 60-324 (326)
9 PF03404 Mo-co_dimer: Mo-co ox 100.0 1.6E-39 3.6E-44 271.1 12.5 124 166-295 2-130 (131)
10 cd02107 YedY_like_Moco YedY_li 100.0 1.5E-38 3.2E-43 284.5 12.8 131 31-179 69-214 (218)
11 PF00174 Oxidored_molyb: Oxido 100.0 2.3E-35 4.9E-40 256.1 8.9 126 1-145 44-169 (169)
12 cd02108 bact_SO_family_Moco ba 100.0 3.8E-34 8.2E-39 251.7 11.4 110 31-151 69-184 (185)
13 cd02109 arch_bact_SO_family_Mo 100.0 8.5E-34 1.8E-38 248.7 12.0 112 22-153 62-173 (180)
14 PRK05363 TMAO/DMSO reductase; 100.0 1.1E-32 2.4E-37 257.8 11.3 135 31-179 143-286 (319)
15 cd00321 SO_family_Moco Sulfite 100.0 4.5E-29 9.8E-34 214.0 11.5 103 23-137 54-156 (156)
16 COG2041 Sulfite oxidase and re 99.9 1.2E-28 2.6E-33 228.7 6.6 105 33-152 138-242 (271)
17 COG3915 Uncharacterized protei 99.5 9.7E-14 2.1E-18 114.5 7.2 95 18-134 51-154 (155)
18 PF02012 BNR: BNR/Asp-box repe 96.0 0.0044 9.6E-08 30.7 1.5 11 210-220 2-12 (12)
19 PF10648 Gmad2: Immunoglobulin 91.8 2 4.3E-05 33.4 9.1 78 176-267 4-85 (88)
20 PF15418 DUF4625: Domain of un 88.2 4.6 0.0001 33.8 9.0 83 179-272 25-125 (132)
21 PF13754 Big_3_4: Bacterial Ig 88.1 0.63 1.4E-05 32.7 3.2 28 245-272 13-42 (54)
22 cd00260 Sialidase Sialidases o 74.9 10 0.00022 35.9 7.0 52 174-225 142-193 (351)
23 PF06594 HCBP_related: Haemoly 67.8 5.6 0.00012 26.4 2.5 32 190-223 12-43 (43)
24 TIGR02807 cas6_var CRISPR-asso 64.3 2.8 6.1E-05 37.3 0.6 20 94-113 4-23 (190)
25 PF05547 Peptidase_M6: Immune 61.8 18 0.0004 38.0 6.2 53 205-261 384-439 (645)
26 cd00260 Sialidase Sialidases o 57.7 40 0.00088 31.7 7.4 22 204-225 221-242 (351)
27 PF09559 Cas6: Cas6 Crispr; I 55.9 4.4 9.5E-05 36.2 0.4 18 96-113 3-20 (195)
28 PF12245 Big_3_2: Bacterial Ig 54.2 13 0.00028 26.5 2.6 28 245-272 11-41 (60)
29 PF03422 CBM_6: Carbohydrate b 54.0 88 0.0019 24.7 7.8 67 188-267 44-113 (125)
30 PF13088 BNR_2: BNR repeat-lik 49.8 1.3E+02 0.0028 27.0 9.1 37 188-225 118-154 (275)
31 cd02847 Chitobiase_C_term Chit 49.6 19 0.00042 27.3 3.0 37 181-223 14-50 (78)
32 PF11797 DUF3324: Protein of u 48.4 39 0.00085 28.2 5.0 35 168-202 83-119 (140)
33 PF13750 Big_3_3: Bacterial Ig 48.2 1.3E+02 0.0029 25.7 8.3 85 179-274 56-143 (158)
34 KOG3063 Membrane coat complex 45.9 40 0.00087 31.3 4.9 55 92-147 226-290 (301)
35 PF01357 Pollen_allerg_1: Poll 45.0 1.1E+02 0.0024 23.1 6.7 29 196-224 18-46 (82)
36 PF14870 PSII_BNR: Photosynthe 44.1 16 0.00035 34.8 2.2 19 207-225 254-272 (302)
37 PF13750 Big_3_3: Bacterial Ig 43.3 31 0.00067 29.6 3.7 27 245-271 2-33 (158)
38 COG4719 Uncharacterized protei 43.1 13 0.00027 32.0 1.2 33 186-222 96-129 (176)
39 PF08381 BRX: Transcription fa 43.0 27 0.00058 25.3 2.7 24 187-212 11-35 (59)
40 PF03370 CBM_21: Putative phos 42.0 1E+02 0.0022 24.7 6.3 80 173-263 9-95 (113)
41 PF07495 Y_Y_Y: Y_Y_Y domain; 41.0 41 0.00089 23.5 3.5 27 247-273 30-58 (66)
42 PF08770 SoxZ: Sulphur oxidati 40.6 1.1E+02 0.0023 24.3 6.1 77 172-270 16-94 (100)
43 PF13290 CHB_HEX_C_1: Chitobia 36.8 70 0.0015 23.4 4.2 43 207-271 22-64 (67)
44 KOG4274 Positive cofactor 2 (P 33.7 36 0.00079 35.2 2.9 53 77-136 634-686 (742)
45 PF09937 DUF2169: Uncharacteri 25.9 67 0.0015 30.4 3.2 37 180-216 50-87 (297)
46 PF11896 DUF3416: Domain of un 23.7 3.5E+02 0.0076 23.9 7.1 63 188-265 25-91 (187)
47 PF02494 HYR: HYR domain; Int 23.2 68 0.0015 23.7 2.2 17 254-270 57-73 (81)
48 PF03174 CHB_HEX_C: Chitobiase 22.4 1.7E+02 0.0037 21.3 4.2 64 180-271 7-70 (75)
49 COG5475 Uncharacterized small 22.0 73 0.0016 22.9 1.9 31 102-133 8-40 (60)
50 smart00602 VPS10 VPS10 domain. 21.9 1.1E+02 0.0023 32.1 4.0 22 205-226 415-436 (612)
51 PF13715 DUF4480: Domain of un 20.7 3.4E+02 0.0075 19.8 6.5 54 192-265 1-55 (88)
No 1
>KOG0535 consensus Sulfite oxidase, molybdopterin-binding component [Energy production and conversion]
Probab=100.00 E-value=7.4e-93 Score=647.58 Aligned_cols=285 Identities=52% Similarity=0.944 Sum_probs=266.8
Q ss_pred CcEEccCCCccCcccccccCCcCCCCCceeeeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEE
Q 022262 1 MHGQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKA 80 (300)
Q Consensus 1 ~~lqCaGN~R~~~~~~~~~~g~~W~~g~i~~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~ 80 (300)
+|||||||||++|++++++.|+.|+.++|+|+.|+|++|.|||+++|+... ..+++||.|+|+|. ++.+..|.+
T Consensus 92 atl~CaGNRR~emn~vK~vkGl~W~~~aisna~W~GarL~DvL~~~Gi~~~----~~~a~hV~Fegad~--d~tg~pYga 165 (381)
T KOG0535|consen 92 ATLQCAGNRRSEMNKVKKVKGLNWGSGAISNAVWGGARLCDVLRRAGIQSR----ETKALHVCFEGADD--DPTGTPYGA 165 (381)
T ss_pred EEEEecCccHHHHhhHhhhccccccccccccceecCccHHHHHHHhCCCcc----cCcceEEEEecccc--CCCCCcccc
Confidence 589999999999999999999999999999999999999999999999754 24678999999995 455678999
Q ss_pred EEechhhcCCCCCeEEEEeeCCccCCCCCCCceEEEecCccCceeeEeeeEEEeeccccCCceeeeccccCCCCCCCCCC
Q 022262 81 SIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNI 160 (300)
Q Consensus 81 sipl~~a~~~~~~vlLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~~~Y~~~~~~~~~~~~ 160 (300)
|||+++||+|..|+||||+||||+|+++||||+|+||||..|+|+||||++|.|+.+++++|||++||+.|+|.+++++.
T Consensus 166 SI~l~~A~dp~~dVilAY~mNge~L~rDHGfPvRVIVPG~vGaR~VKWL~rIiV~~kESds~~~qkDyk~f~psvd~d~~ 245 (381)
T KOG0535|consen 166 SIPLEKAMDPEADVILAYEMNGEPLPRDHGFPVRVIVPGVVGARMVKWLKRIIVTPKESDSHWQQKDYKGFSPSVDWDEV 245 (381)
T ss_pred cccHhhhcCcccceEEeeeecCccCCCCCCCceEEEecccccchhhhhhhheeeccccccchhhhcccccCCCccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceeceEEEEecCCCCeecC--CcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCCC
Q 022262 161 NWKSRRPLMDFPVQCVICSLEDVNVMKP--GKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSS 238 (300)
Q Consensus 161 ~~~~~~~i~~~~v~S~I~~P~~g~~v~~--g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~ 238 (300)
+|+..++|++|||+|+||.|.++..|++ |+|+|+|||||||||+|+|||||+|||.||..|+|++++. | ..+
T Consensus 246 ~w~~~p~iqe~pVqsaIctp~~~~~V~~~~~~vtikGYA~SGGGr~i~RVdvslDgG~tW~v~eldqee~-~----~~~- 319 (381)
T KOG0535|consen 246 DWSSKPSIQELPVQSAICTPEDGLPVKAFDGPVTIKGYAWSGGGRKIIRVDVSLDGGETWNVAELDQEEK-P----DKY- 319 (381)
T ss_pred ccccCchhhhcCcceeecccCCCceeccCCCceEEEEEEEeCCCceEEEEEEEecCCceeeeeecccccc-C----Ccc-
Confidence 9999999999999999999999999997 7899999999999999999999999999999999998874 2 112
Q ss_pred CceeeEEeEEEEECCCc---cEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEEEEec
Q 022262 239 DKWAWVFFEVIIDIPHS---TQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGH 297 (300)
Q Consensus 239 ~~~aW~~W~~~~~~~~~---~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~N~~~~v~v~v~~ 297 (300)
+.|||++|+.++++..+ .+|+|||+|++.|+||+..+.|||+||++||+||||++.|.+
T Consensus 320 ~~w~W~lw~a~v~V~~~~~~~~I~akAvD~a~NvQPe~~~~IWNlrGvl~nawhRV~~~v~~ 381 (381)
T KOG0535|consen 320 KFWAWCLWSAEVPVSDGQKEKNIIAKAVDSAYNVQPETVESIWNLRGVLNNAWHRVKVNVCK 381 (381)
T ss_pred ceEEEEEEEecccccccchhhhhHHHhhhhhhcCCcchhhhhhhHHHHhhhheeEEEeeecC
Confidence 68999999999999544 479999999999999999999999999999999999999853
No 2
>PLN00177 sulfite oxidase; Provisional
Probab=100.00 E-value=6.4e-88 Score=651.66 Aligned_cols=300 Identities=86% Similarity=1.415 Sum_probs=267.3
Q ss_pred CcEEccCCCccCcccccccCCcCCCCCceeeeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEE
Q 022262 1 MHGQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKA 80 (300)
Q Consensus 1 ~~lqCaGN~R~~~~~~~~~~g~~W~~g~i~~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~ 80 (300)
++|||+||||++|+..+++.|.+|+.|+|+|++|+||+|+|||++||++........+++||.|+|+|.+...+..+|.+
T Consensus 94 ~~l~C~GN~R~~~~~~~~~~G~~W~~gaig~a~WtGv~L~dvL~~aG~~~~~~~~~~~a~~v~f~g~d~~~~~~~~~y~~ 173 (393)
T PLN00177 94 ATLQCAGNRRTAMSKVRKVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTSITSSGGKHVEFVSVDKCKEENGGPYKA 173 (393)
T ss_pred EEEEecCCCccceeecccccccCcccceeecCeEECcCHHHHHHHcCCCccccccCCCceEEEEEEeccccccCCCCcEE
Confidence 47999999999998888999999999999999999999999999999963222122468999999998644444457999
Q ss_pred EEechhhcCCCCCeEEEEeeCCccCCCCCCCceEEEecCccCceeeEeeeEEEeeccccCCceeeeccccCCCCCCCCCC
Q 022262 81 SIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNI 160 (300)
Q Consensus 81 sipl~~a~~~~~~vlLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~~~Y~~~~~~~~~~~~ 160 (300)
||||++|+++.+++||||+|||||||++|||||||||||+||++|||||++|+|++++++||||+++|++++|..+..+.
T Consensus 174 sipl~~a~~~~~d~lLAy~mNGepLp~~hG~PlRLvvPg~~G~~svKWL~~I~v~~~~~~g~w~~~~Y~~~~~~~~~~~~ 253 (393)
T PLN00177 174 SIPLSQATNPEADVLLAYEMNGEVLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECQGFFMQKDYKMFPPSVNWDNI 253 (393)
T ss_pred eEEHHHhhCcccCeEEEEeeCCeECchhcCCceEEEeCCEeeeeceEEeeEEEEEecCCCCcceecccccCCCCCCcccc
Confidence 99999999875689999999999999999999999999999999999999999999999999999999999888776666
Q ss_pred CCCCCCCccceeceEEEEecCCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCCCCc
Q 022262 161 NWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDK 240 (300)
Q Consensus 161 ~~~~~~~i~~~~v~S~I~~P~~g~~v~~g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~ 240 (300)
.|.+..+|++|+++|+|+.|.+++.++.|+++|+||||||||++|+|||||+|||+||++|+|..+.+.|........++
T Consensus 254 ~~~~~~~i~~~~v~S~I~~P~~~~~i~~g~~~i~G~Awsggg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~ 333 (393)
T PLN00177 254 NWSTRRPQMDFPVQSAICSLEDVNAIKPGKVTVAGYALSGGGRGIERVDISVDGGKTWVEASRYQKPGVPYISDDISSDK 333 (393)
T ss_pred CccccCcceeecCCeEEecCCCCCcccCceEEEEEEEECCCCccEEEEEEEcCCCCCceeeeeccccccccccccccCCc
Confidence 68777899999999999999999999989999999999988889999999999999999999976532221112233469
Q ss_pred eeeEEeEEEEECCCccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEEEEeccCC
Q 022262 241 WAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGHSNM 300 (300)
Q Consensus 241 ~aW~~W~~~~~~~~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~N~~~~v~v~v~~~~~ 300 (300)
|||++|+++|+.++.++|+|||||++||+||+....+||++||+||+||||+|+|.+|+|
T Consensus 334 ~aW~~w~~~~~~~g~~~l~~RA~D~~G~~QP~~~~~~wN~~Gy~~n~~~rv~v~v~~~~~ 393 (393)
T PLN00177 334 WAWVLFEATVDVPQSTEIVAKAVDSAANVQPESVESIWNLRGILNTSWHRVQLRVGHSNM 393 (393)
T ss_pred cEEEEEEEEecCCCCeEEEEEEEcCCCCCCCCCCcCCcCCCCcccccEEEEEEEEeeccC
Confidence 999999999988888999999999999999998777899999999999999999999987
No 3
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=2.4e-82 Score=608.74 Aligned_cols=285 Identities=55% Similarity=0.948 Sum_probs=253.6
Q ss_pred CcEEccCCCccCcccccccCCcCCCCCceeeeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEE
Q 022262 1 MHGQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKA 80 (300)
Q Consensus 1 ~~lqCaGN~R~~~~~~~~~~g~~W~~g~i~~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~ 80 (300)
++|||+||+|++|...+++.|.+|+.++|+|++|+||+|+|||++||+++.. ..++++|.|+|+|... +..+|.+
T Consensus 76 ~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aGv~~~~---~~~a~~V~~~~~d~~~--~~~~y~~ 150 (365)
T cd02111 76 ATLQCAGNRRSEMTKVKKVKGLQWGDGAISNAEWGGARLRDVLLDAGIPEDD---SQGGLHVHFEGLDVDP--TGTPYGA 150 (365)
T ss_pred EEEEecCCCchhccccccccCCCccCCcEEeeEEECcCHHHHHHHhCCCCcc---CCCceEEEEEecCCCC--CCCCeee
Confidence 4799999999999888899999999999999999999999999999998531 0147899999998433 3347999
Q ss_pred EEechhhcCCCCCeEEEEeeCCccCCCCCCCceEEEecCccCceeeEeeeEEEeeccccCCceeeeccccCCCCCCCCCC
Q 022262 81 SIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNI 160 (300)
Q Consensus 81 sipl~~a~~~~~~vlLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~~~Y~~~~~~~~~~~~ 160 (300)
||||++||+|++++||||+||||||+++||||||||+||+||++|||||++|+|++++++||||+++|++++|..+.+..
T Consensus 151 sipl~~a~~p~~~~lLA~~mNGepL~~~hG~PlRLvvPg~~G~~~vKWl~~I~v~~~~~~g~w~~~~Y~~~~~~~~~~~~ 230 (365)
T cd02111 151 SIPLSKALDPEADVLLAYEMNGTPLPRDHGFPLRVVVPGVVGARSVKWLDRIVVSDEESDSHWQQNDYKGFSPSVDWDNV 230 (365)
T ss_pred eeEHHHhhCcCCCeEEEehhcCCCCccccCccEEEEeCCeeEEEEEEEeeEEEEeccCCCCcceecceeecCCCCCcccc
Confidence 99999999965589999999999999999999999999999999999999999999999999999999998777665555
Q ss_pred CCCCCCCccceeceEEEEecCCCCe---ecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCC
Q 022262 161 NWKSRRPLMDFPVQCVICSLEDVNV---MKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMS 237 (300)
Q Consensus 161 ~~~~~~~i~~~~v~S~I~~P~~g~~---v~~g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~ 237 (300)
.|.+..+|++|++||+|+.|.+++. +..|.++|+||||+|||++|+|||||+|||+||++|+|.++.. + ..+
T Consensus 231 ~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~~i~G~A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~-~----~~~ 305 (365)
T cd02111 231 DFSKAPAIQEMPVQSAICSPSVGAPVVTVPPGKITVKGYAWSGGGRKIVRVDVSLDGGRTWKVAELEQEEN-V----WPS 305 (365)
T ss_pred CccccCceeeeccCEEEecCCCCCeeeccCCceEEEEEEEECCCCCcEEEEEEECCCCCcceeCCcCCCCC-c----ccc
Confidence 6777789999999999999999994 5567999999999988889999999999999999999987653 1 123
Q ss_pred CCceeeEEeEEEEEC-C-CccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEEEE
Q 022262 238 SDKWAWVFFEVIIDI-P-HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 295 (300)
Q Consensus 238 ~~~~aW~~W~~~~~~-~-~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~N~~~~v~v~v 295 (300)
+++|||++|+++|++ + +.++|+|||||++||+||+....+||++||+||+||+|+|.+
T Consensus 306 ~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~QP~~~~~~wn~~Gy~~n~~~~v~v~~ 365 (365)
T cd02111 306 GRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNVQPETVEPIWNLRGVLNNAWHRVKVVV 365 (365)
T ss_pred CCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCcCCCCCCCCCCccceecceEEEEEeeC
Confidence 457999999999998 4 357999999999999999987777999999999999999974
No 4
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=1.1e-81 Score=607.35 Aligned_cols=282 Identities=34% Similarity=0.670 Sum_probs=246.6
Q ss_pred CcEEccCCCccCcccccccCCcCCCCCceeeeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEE
Q 022262 1 MHGQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKA 80 (300)
Q Consensus 1 ~~lqCaGN~R~~~~~~~~~~g~~W~~g~i~~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~ 80 (300)
++|||+||+|++|+..+++.|.+|+.|+|+|++|+||+|+|||++||+++.. .+++||.|+|+|.........|.+
T Consensus 91 ~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~WtGV~L~dlLe~aG~~~~~----~~a~~V~~~g~D~~~~~~~~~y~~ 166 (386)
T cd02112 91 VTLVCAGNRRKEQNMVKKTIGFNWGAAGTSTSLWTGVRLSDLLDRCGPKSPK----GGARHVCFEGADDLLPGPNGKYGT 166 (386)
T ss_pred EEEEcCCCCcccccccccccCcCcccccceEeEEEeeEHHHHHHHcCCCCcc----CCceEEEEEccCcccccCCCCcEe
Confidence 4799999999999878899999999999999999999999999999998521 158999999998533223346999
Q ss_pred EEechhhcCCCCCeEEEEeeCCccCCCCCCCceEEEecCccCceeeEeeeEEEeeccccCCceeeeccccCCCCCCCCCC
Q 022262 81 SIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNI 160 (300)
Q Consensus 81 sipl~~a~~~~~~vlLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~~~Y~~~~~~~~~~~~ 160 (300)
||||+++|++..++||||+|||||||++|||||||||||+||++|||||++|+|+++++++|||+.+|+++++..++...
T Consensus 167 slpl~~al~~~~dvlLAy~mNGepLp~~hG~PlRlvVPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~y~~~~~~~~~~~~ 246 (386)
T cd02112 167 SITLSWAMDPSKDVMLAYKQNGELLHPDHGFPVRLIIPGQIGGRMVKWLKRIVVSDRESQNHYHFHDNRVLPSHVDAELA 246 (386)
T ss_pred eeEHHHhhCcCCCeEEEEeeCCeECCccCCcEEEEEeCCccceeeeeEeEEEEEEecCCCCceeecccccCCcccCcccc
Confidence 99999999875689999999999999999999999999999999999999999999999999999999998766544322
Q ss_pred ---C-CCC-CCCccceeceEEEEecCCCCee-----c-CCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCC
Q 022262 161 ---N-WKS-RRPLMDFPVQCVICSLEDVNVM-----K-PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGI 229 (300)
Q Consensus 161 ---~-~~~-~~~i~~~~v~S~I~~P~~g~~v-----~-~g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~ 229 (300)
. |.+ ..+|++|+|+|+|+.|.+++++ + .++++|+||||||+|++|+|||||+|||+||++|+|.++..
T Consensus 247 ~~~~~w~~~~~~i~~~~v~S~I~~P~~~~~v~~~~~~~~~~~~i~G~A~sg~g~~I~rVeVS~DgG~tW~~A~L~~~~~- 325 (386)
T cd02112 247 NEEGWWYKPEYIINDLNVNSAITTPAHDEVLPLNGLTTAETYTMKGYAYAGGGRRVTRVEVSLDDGKSWKLASIDYPED- 325 (386)
T ss_pred ccccccccCCceeeeeccCeEEeccCCCCEeeccccCCCCeEEEEEEEEcCCCCcEEEEEEEcCCCCCceeCCCCCCCC-
Confidence 2 343 3589999999999999999998 3 45899999999988889999999999999999999976542
Q ss_pred CccccCCCCCceeeEEeEEEEEC---CCccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEE
Q 022262 230 PYIADHMSSDKWAWVFFEVIIDI---PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQV 293 (300)
Q Consensus 230 ~~~~~~~~~~~~aW~~W~~~~~~---~~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~N~~~~v~v 293 (300)
+ .+++++|||++|+++|++ ++.++|+|||||++||+||+... ||++||+||+||+|+|
T Consensus 326 ~----~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G~~QP~~~~--wN~~Gy~~n~~~~v~v 386 (386)
T cd02112 326 P----TKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESMNTQPRDMT--WNVMGMMNNCWFRVKI 386 (386)
T ss_pred c----cccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCCCcCCCCCC--ccccceeeceEEEEcC
Confidence 1 122358999999999976 36789999999999999999765 9999999999999985
No 5
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=5.1e-79 Score=586.07 Aligned_cols=268 Identities=31% Similarity=0.560 Sum_probs=237.2
Q ss_pred CcEEccCCCccCcccccccCCcCCCCCceeeeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEE
Q 022262 1 MHGQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKA 80 (300)
Q Consensus 1 ~~lqCaGN~R~~~~~~~~~~g~~W~~g~i~~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~ 80 (300)
++|||+||+|+.|. +++.|.||+.|+++|++|+||+|+|||++||+++ ++++|.|+|+|........+|.+
T Consensus 95 ~~l~C~gN~r~~~~--~~~~G~~W~~G~i~~a~WtGV~L~dlL~~aG~~~-------~a~~V~f~g~D~~~~~~~~~y~~ 165 (367)
T cd02114 95 AVNQCSGNSRGFFQ--PRVQGAQLANGAMGNARWAGVPLKAVLAKAGVQD-------GARQVAFRGLDQPVLDVTPDFVK 165 (367)
T ss_pred EEEEECCCCccccc--ccccCCCcccceEEeeEEEeeEHHHHHHHcCCCC-------CCcEEEEEecCCccccCCCCeEE
Confidence 47999999999884 7889999999999999999999999999999984 58999999999533223336999
Q ss_pred EEechhhcCCCCCeEEEEeeCCccCCCCCCCceEEEecCccCceeeEeeeEEEeeccccCCceeeeccccCCCCCCCCC-
Q 022262 81 SIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDN- 159 (300)
Q Consensus 81 sipl~~a~~~~~~vlLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~~~Y~~~~~~~~~~~- 159 (300)
||||++++++ ++||||+||||||+++|||||||||||+||++|||||++|+|+++++++|||+++|++++.......
T Consensus 166 sipl~~a~~~--~~lLAy~mNGepL~~~hG~PlRlvvPg~~g~~~vKwl~~I~v~~~~~~g~w~~~~Y~~~~~~~~~~~~ 243 (367)
T cd02114 166 SLDIDHALDG--EVMLAWEMNGEPLPVLNGYPLRLVVPGFYATYWVKHLSHITVLDKEFDGFWASQAYRIPDNADAGVEP 243 (367)
T ss_pred eeeHHHhcCC--CeEEEEeeCCeECCHHhCCceEEEecCEeeeeeeEeeeEEEEEecCCCCceeecccccCCCcccccCC
Confidence 9999999985 8999999999999999999999999999999999999999999999999999999998644321111
Q ss_pred -CCCCCCCCccceeceEEEEecCCCCeecCC-cEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCC
Q 022262 160 -INWKSRRPLMDFPVQCVICSLEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMS 237 (300)
Q Consensus 160 -~~~~~~~~i~~~~v~S~I~~P~~g~~v~~g-~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~ 237 (300)
..+.+..+|++|+++|+|+.|.+++.++.| +++|+||||+| +++|+|||||+|||+||++|+|.++.+
T Consensus 244 g~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~i~G~A~~G-~~~I~rVEVS~DgG~tW~~A~l~~~~~--------- 313 (367)
T cd02114 244 GTAPDRTAPINRFKVRSFITSLENGAIVAPAGELALRGIAFDG-GSGIRRVDVSADGGDSWTQATLGPDLG--------- 313 (367)
T ss_pred cccccccceeeeeecceEEecCCCCCEecCCCeEEEEEEEEcC-CCCEEEEEEEeCCCCcceEeEeCCCCC---------
Confidence 113345799999999999999999999855 89999999996 669999999999999999999976643
Q ss_pred CCceeeEEeEEEEEC--CCccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEE
Q 022262 238 SDKWAWVFFEVIIDI--PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQV 293 (300)
Q Consensus 238 ~~~~aW~~W~~~~~~--~~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~N~~~~v~v 293 (300)
+|+|++|+++|++ ++.++|+|||||++||+||+... ||++||+||+||+|+|
T Consensus 314 --~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~QP~~~~--wn~~Gy~~n~~~~v~v 367 (367)
T cd02114 314 --RFSFRGWKLTLDGVKKGPLTLMVRATNNDGQTQPLRAP--WNPGGYMRNVVERTRI 367 (367)
T ss_pred --CcEEEEEEEEEECCCCCcEEEEEEEEcCCCCCCCCCCc--cCcccEecceEEEEeC
Confidence 8999999999987 46789999999999999999755 9999999999999986
No 6
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=8.3e-79 Score=637.56 Aligned_cols=286 Identities=33% Similarity=0.686 Sum_probs=253.3
Q ss_pred CcEEccCCCccCcccccccCCcCCCCCceeeeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEE
Q 022262 1 MHGQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKA 80 (300)
Q Consensus 1 ~~lqCaGN~R~~~~~~~~~~g~~W~~g~i~~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~ 80 (300)
+||||+||||++|+..+++.|.+|+.|+|||+.|+||+|+|||++||+.... .+++||.|+|+|......+..|.+
T Consensus 163 ~~l~C~gN~r~~~~~~~~~~G~~Wg~gavs~~~W~GV~L~dlL~~ag~~~~~----~~a~~V~f~g~d~~~~~~~~~y~~ 238 (888)
T PLN02252 163 VTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVRLRDVLRRCGVMSRK----GGALNVCFEGAEDLPGGGGSKYGT 238 (888)
T ss_pred EEEEeCCCCcccccccccccccCccccccccceEeceEHHHHHHHcCCCCCC----CCceEEEEEcccccccCCCCCcee
Confidence 5899999999999888999999999999999999999999999999997421 368999999998544333347999
Q ss_pred EEechhhcCCCCCeEEEEeeCCccCCCCCCCceEEEecCccCceeeEeeeEEEeeccccCCceeeeccccCCCCCCCCCC
Q 022262 81 SIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNI 160 (300)
Q Consensus 81 sipl~~a~~~~~~vlLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~~~Y~~~~~~~~~~~~ 160 (300)
||||++||++.+++||||+||||||+++|||||||||||++|++|||||++|+|+++++++||+.++|+++|+..+.+.+
T Consensus 239 sipl~~a~d~~~dvlLAy~mNGepL~~~hG~PvRlvvPG~~G~~~vKWl~~I~v~~~~~~~~~~~~d~r~~p~~~~~~~~ 318 (888)
T PLN02252 239 SITLERAMDPARDVILAYMQNGEPLTPDHGFPVRLIIPGFIGGRMVKWLKRIIVTTAESDNYYHYRDNRVLPSHVDAELA 318 (888)
T ss_pred eeeHHHHhCcCCCeEEEEeeCCeECCccCCceEEEeCCCceeeeeeeEeeEEEEEeCCCCCceeecccccCCCccccccc
Confidence 99999999976689999999999999999999999999999999999999999999999999999999998877654422
Q ss_pred ---CCCCC--CCccceeceEEEEecCCCCeec------CCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCC
Q 022262 161 ---NWKSR--RPLMDFPVQCVICSLEDVNVMK------PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGI 229 (300)
Q Consensus 161 ---~~~~~--~~i~~~~v~S~I~~P~~g~~v~------~g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~ 229 (300)
.|... .+|++|++||+|+.|.++++|+ .++|+|+||||+|||++|+|||||+|||+||++|+|..++.
T Consensus 319 ~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~~~~~i~G~A~sggg~~I~rVEVS~DgG~tW~~a~l~~~~~- 397 (888)
T PLN02252 319 NAEGWWYKPEYIINELNINSVITTPAHDEILPINASTTQRPYTMKGYAYSGGGRKVTRVEVSLDGGETWRLCDLDHPEK- 397 (888)
T ss_pred ccccccccCCccceeeccceEEecCCCCCEecccccCCCceEEEEEEEECCCCCceEEEEEEcCCCCcceeCccCCCCC-
Confidence 34322 3799999999999999999997 34899999999998999999999999999999999987752
Q ss_pred CccccCCCCCceeeEEeEEEEEC---CCccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEEEEec
Q 022262 230 PYIADHMSSDKWAWVFFEVIIDI---PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGH 297 (300)
Q Consensus 230 ~~~~~~~~~~~~aW~~W~~~~~~---~~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~N~~~~v~v~v~~ 297 (300)
| .++++.|||++|+++|++ .+.++|+|||||++||+||+... ||++||+||+||||+|+|..
T Consensus 398 ~----~~~g~~~~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~--wN~~G~~nN~~~rv~v~v~~ 462 (888)
T PLN02252 398 P----TKYGKYWCWCFWSLDVEVLDLLGAKEIAVRAWDESMNTQPEKLI--WNLMGMMNNCWFRVKVNVCK 462 (888)
T ss_pred c----cccCCccEEEEEEEeEecccCCCceEEEEEEEcCCCCcCCCCCc--cCcCceEEeeEEEEEEEEee
Confidence 1 244567999999999976 46789999999999999999754 99999999999999999843
No 7
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=100.00 E-value=6.6e-77 Score=562.60 Aligned_cols=269 Identities=45% Similarity=0.774 Sum_probs=239.6
Q ss_pred CcEEccCCCccCcccccccCCcCCCCCceeeeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEE
Q 022262 1 MHGQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKA 80 (300)
Q Consensus 1 ~~lqCaGN~R~~~~~~~~~~g~~W~~g~i~~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~ 80 (300)
++|||+||+|.+|.. ...|+||+.|+|++++|+||+|+|||++||+++ ++++|.|+|+|........+|.+
T Consensus 47 ~~l~C~gn~r~~~~~--~~~g~~W~~g~i~~~~w~GV~L~dlL~~ag~~~-------~a~~V~~~~~D~~~~~~~~~Y~~ 117 (317)
T cd02110 47 ATLECSGNGRGGFIP--VRSGAQWGHGAVGNARWTGVPLKDLLEEAGVKP-------GAKHVLFEGADVPPGEKAADYTR 117 (317)
T ss_pred EEEEcCCCCcccccc--cccCCccccCceeecEEECcCHHHHHHHhCCCC-------CCcEEEEEccCcccccCCCCeEE
Confidence 479999999999963 445999999999999999999999999999984 58999999998544334458999
Q ss_pred EEechhhcCCCCCeEEEEeeCCccCCCCCCCceEEEecCccCceeeEeeeEEEeeccccCCceeeeccccCCCCCCCCCC
Q 022262 81 SIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNI 160 (300)
Q Consensus 81 sipl~~a~~~~~~vlLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~~~Y~~~~~~~~~~~~ 160 (300)
+|||++++++ ++||||+||||||+++||||||||+||+||++|||||++|+|++++.+||||+++|+.+++..+. .
T Consensus 118 sipl~~~~~~--~~iLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~I~v~~~~~~g~w~~~~Y~~~~~~~~~--~ 193 (317)
T cd02110 118 SVPLSKALDD--DALLAYEMNGEPLPPDHGYPLRLVVPGWYGARSVKWLRRIEVTDQPSDGYWQTRDYTVPPPDVDA--V 193 (317)
T ss_pred EEEHHHhcCC--CcEEEehhcCccCCHHhCCceEEEcCCceeeEeeEEeeEEEEEecCCCCceEccccccCCCcccc--c
Confidence 9999999984 89999999999999999999999999999999999999999999999999999999998765433 2
Q ss_pred CCCCCCCccceeceEEEEecCCCCeecC-CcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCCCC
Q 022262 161 NWKSRRPLMDFPVQCVICSLEDVNVMKP-GKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSD 239 (300)
Q Consensus 161 ~~~~~~~i~~~~v~S~I~~P~~g~~v~~-g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~ 239 (300)
.+.+..++++|++||+|+.|.+++.+.. ++++|+||||+| +++|+|||||+|||+||++|+|.++.. +
T Consensus 194 ~~~~~~~~~~~~~~s~I~~p~~~~~~~~~~~~~i~G~A~~g-~~~I~rVEvS~DgG~tW~~A~l~~~~~----------~ 262 (317)
T cd02110 194 GGKARRPIGEMPVKSVITSPSPGAELVSGGRVEIGGVAWSG-GRGIRRVEVSLDGGRTWQEARLEGPLA----------G 262 (317)
T ss_pred CCCccceeEEEccCEEEeccCCCCEecCCCeEEEEEEEEcC-CCCEEEEEEEeCCCCcceEeEccCCcC----------C
Confidence 2445679999999999999999976664 589999999996 679999999999999999999987751 3
Q ss_pred ceeeEEeEEEEEC-CCccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEE
Q 022262 240 KWAWVFFEVIIDI-PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQV 293 (300)
Q Consensus 240 ~~aW~~W~~~~~~-~~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~N~~~~v~v 293 (300)
+|+|++|+++|++ ++.++|+|||+|++||+||+.....||++||++|+||||+|
T Consensus 263 ~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~QP~~~~~~~n~~g~~~n~~~~v~v 317 (317)
T cd02110 263 PRAWRQWELDWDLPPGEYELVARATDSTGNVQPERAEWNWNPGGYGNNHWHRVQV 317 (317)
T ss_pred CCEEEEEEEEEEcCCCcEEEEEEEECCCCCcCCCcccccccCCCceeeeEEEEEC
Confidence 8999999999999 57789999999999999999877555679999999999986
No 8
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=2.8e-76 Score=558.32 Aligned_cols=259 Identities=29% Similarity=0.457 Sum_probs=233.3
Q ss_pred CcEEccCCCccCcccccccCCcCCCCCceeeeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEE
Q 022262 1 MHGQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKA 80 (300)
Q Consensus 1 ~~lqCaGN~R~~~~~~~~~~g~~W~~g~i~~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~ 80 (300)
++|||+||+|+.|+. +++.|+||+.|+|+|++|+||+|+|||++||+++ ++++|.|+|+| +..|.+
T Consensus 60 ~~l~C~gn~r~~~~~-~~~~G~~W~~g~i~~a~W~GV~L~dlL~~ag~~~-------~a~~V~~~g~D------~~~y~~ 125 (326)
T cd02113 60 YFLECSGNGGTGWRG-APLPTAQYTHGMLSCSEWTGVPLSTLLEEAGVKP-------GAKWLLAEGAD------AAAMTR 125 (326)
T ss_pred EEEEecCCCcccccc-cccccccccccceeEEEEEeeEHHHHHHhcCCCC-------CceEEEEEecC------CCceeE
Confidence 479999999999964 4588999999999999999999999999999984 58999999998 125999
Q ss_pred EEechhhcCCCCCeEEEEeeCCccCCCCCCCceEEEecCccCceeeEeeeEEEeeccccCCceeeeccccCCCCCCCCCC
Q 022262 81 SIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNI 160 (300)
Q Consensus 81 sipl~~a~~~~~~vlLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~~~Y~~~~~~~~~~~~ 160 (300)
||||+++++ ++||||+||||||+.+||||||||+||+||++|||||++|+|++++.++|||..+|+..++...
T Consensus 126 sipl~~a~~---~~lLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~Y~~~~~~~~---- 198 (326)
T cd02113 126 SIPLEKALD---DALVAYAQNGEALRPENGYPLRLVVPGWEGNTNVKWLRRIEVGDQPWMTREETSKYTDLLPDGR---- 198 (326)
T ss_pred EeeHHHhCc---CcEEEEeeCCeECChhhCceEEEEeCCccceeCceEeeEEEEEecccCCchhhccccccCCCCc----
Confidence 999999993 7999999999999999999999999999999999999999999999999999999998655432
Q ss_pred CCCCCCCccceeceEEEEecCCCCeec-CCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCCCC
Q 022262 161 NWKSRRPLMDFPVQCVICSLEDVNVMK-PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSD 239 (300)
Q Consensus 161 ~~~~~~~i~~~~v~S~I~~P~~g~~v~-~g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~ 239 (300)
...++++|+++|+|+.|.+++.++ .|+++|+||||+|++ +|+|||||+|||+||++|+|..+.+
T Consensus 199 ---~~~~~~~~~v~S~I~~P~~~~~~~~~~~~~i~G~A~sG~~-~I~rVEVS~DgG~tW~~A~l~~~~~----------- 263 (326)
T cd02113 199 ---ARQFSFVMEAKSVITSPSGGQRLREPGFHEISGLAWSGRG-RIRRVDVSFDGGRTWQDARLEGPVL----------- 263 (326)
T ss_pred ---ccccceEecccEEEecCCCCCEecCCCeEEEEEEEECCCC-CEEEEEEEcCCCCCceECccCCCCC-----------
Confidence 123678899999999999999996 579999999999755 7999999999999999999987764
Q ss_pred ceeeEEeEEEEECC-CccEEEEEeEeCCCCCCCCCccccccccc----CCCCceEEEEEEEe
Q 022262 240 KWAWVFFEVIIDIP-HSTQIVAKAVDTAANVQPESVETIWNLRG----VLNTSWHRVQVRVG 296 (300)
Q Consensus 240 ~~aW~~W~~~~~~~-~~~~i~~RA~D~~G~~QP~~~~~~wN~~G----~~~N~~~~v~v~v~ 296 (300)
+|+|++|++.|.+. +.++|+|||||++||+||+.. .+||.+| |++|++|++.|+|+
T Consensus 264 ~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~QP~~~-~~~n~~g~n~gy~~n~~~~~~v~~~ 324 (326)
T cd02113 264 PKALTRFRLPWKWDGRPAVLQSRATDETGYVQPTRA-ELRAVRGTNSIYHNNAIQSWRVDED 324 (326)
T ss_pred CCceEEEeEEEEcCCCeEEEEEEEEcCCCCCCCCCc-ccchhcccccceecceEEEEEEEcC
Confidence 89999999999985 458999999999999999864 5677777 99999999999985
No 9
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=100.00 E-value=1.6e-39 Score=271.14 Aligned_cols=124 Identities=44% Similarity=0.782 Sum_probs=94.2
Q ss_pred CCccceeceEEEEecCCCCeecCC--cEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCCCCceee
Q 022262 166 RPLMDFPVQCVICSLEDVNVMKPG--KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 243 (300)
Q Consensus 166 ~~i~~~~v~S~I~~P~~g~~v~~g--~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW 243 (300)
.+|++|+|||+|+.|.+++.|+.+ +++|+||||+|+|++|+|||||+|+|+||++|+|..+.. |.. ..+.+|+|
T Consensus 2 ~~i~~~~v~S~I~~P~~~~~v~~~~~~v~i~G~A~~g~g~~I~rVEVS~DgG~tW~~A~l~~~~~-~~~---~g~~~~aW 77 (131)
T PF03404_consen 2 YPINEMPVNSVITSPSDGETVKAGDGTVTIRGYAWSGGGRGIARVEVSTDGGKTWQEATLDGPES-PPR---YGEARWAW 77 (131)
T ss_dssp CB--B---EEEEEESBTTEEEESESEEEEEEEEEE-STT--EEEEEEESSTTSSEEE-EEESTSC-CCH---HTS-TTS-
T ss_pred cchhhcCCCEEEEecCCCCEEccCCcEEEEEEEEEeCCCcceEEEEEEeCCCCCcEEeEeccCCC-ccc---ccccCccc
Confidence 479999999999999999999987 899999999998889999999999999999999998753 100 01127999
Q ss_pred EEeEEEEECC---CccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEEEE
Q 022262 244 VFFEVIIDIP---HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 295 (300)
Q Consensus 244 ~~W~~~~~~~---~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~N~~~~v~v~v 295 (300)
++|+|+|+++ +.++|+|||||++|++||+... ||++||++|+||+|+|+|
T Consensus 78 ~~W~~~~~~~~~~G~~~i~~RA~D~~G~~QP~~~~--wN~~G~~~n~~~~v~v~v 130 (131)
T PF03404_consen 78 RLWEYDWPPPSLPGEYTIMVRATDESGNVQPEEPI--WNPRGYMNNGWHRVKVTV 130 (131)
T ss_dssp EEEEEEEEECSHCCEEEEEEEEEETTS-B--SCHH--CHTT-SS--SSEEEEEEE
T ss_pred ceeeeccCcCccccceEEEEEEeecccccCCCccc--ccccCceeccEEEEEEEE
Confidence 9999999993 5679999999999999999555 999999999999999998
No 10
>cd02107 YedY_like_Moco YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY, which is likely membrane-anchored by a heme-containing trans-membrane subunit YedZ. Preliminary results indicate that YedY may represent a new type of membrane-associated bacterial reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=1.5e-38 Score=284.52 Aligned_cols=131 Identities=27% Similarity=0.384 Sum_probs=112.7
Q ss_pred eeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCcc---ccC------CCCeEEEEechhhcCCCCCeEEEEeeC
Q 022262 31 NAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCK---EEN------GGPYKASIPLSQATNPEADVLLAYEMN 101 (300)
Q Consensus 31 ~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~---~~~------~~~Y~~sipl~~a~~~~~~vlLAy~mN 101 (300)
+++|+||+|+|||++||+++ ++++|.|+|+|... +.+ ...|.+||||++||++ ++||||+||
T Consensus 69 ~a~W~GV~L~dlLe~ag~~~-------~A~~V~f~~~d~~~~~~g~~g~~~~~~~~Y~~slpl~~Al~~--~~LLAy~mN 139 (218)
T cd02107 69 VVPWVGFPLAALLARAEPTS-------EAKYVRFTTLLDKEQMPGQSGLFGVLPWPYVEGLRLDEAMHP--LTLLAVGLY 139 (218)
T ss_pred eeEEEeeEHHHHHHHcCCCC-------CCCEEEEEecCccccccCCccccccccCCcccceeHHHhhCc--ccEEEeeeC
Confidence 68999999999999999985 58999999997321 111 1259999999999996 799999999
Q ss_pred CccCCCCCCCceEEEecCccCceeeEeeeEEEeeccccCCceeeec------cccCCCCCCCCCCCCCCCCCccceeceE
Q 022262 102 GEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD------YKMFPPSVNWDNINWKSRRPLMDFPVQC 175 (300)
Q Consensus 102 GepL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~~~------Y~~~~~~~~~~~~~~~~~~~i~~~~v~S 175 (300)
|||||++||||||||+||+||++|||||++|+|++++.+||||..+ |+..++..+ .|+++|.|+|
T Consensus 140 GepLp~~HG~PlRLVVPg~yG~ksvKWL~~Iev~~~~~~GyWe~~~~~~~~~y~~~~~~~~---------~~~~~~~~~~ 210 (218)
T cd02107 140 GEALPKQNGAPIRLVVPWKYGFKSIKSIVKIEFTKEQPPTTWNLAAPDEYGFYANVNPSVD---------HPRWSQATER 210 (218)
T ss_pred CcCCcHhhCCceEEEeCCeeeeEcceeeeEEEEEeCCCCCcccccCcccccccccCCCCCC---------CCccccceee
Confidence 9999999999999999999999999999999999999999999994 444443321 5799999999
Q ss_pred EEEe
Q 022262 176 VICS 179 (300)
Q Consensus 176 ~I~~ 179 (300)
.|..
T Consensus 211 ~i~~ 214 (218)
T cd02107 211 RIGE 214 (218)
T ss_pred eecc
Confidence 9963
No 11
>PF00174 Oxidored_molyb: Oxidoreductase molybdopterin binding domain; InterPro: IPR000572 A number of different eukaryotic oxidoreductases that require and bind a molybdopterin cofactor have been shown [] to share a few regions of sequence similarity. These enzymes include xanthine dehydrogenase (1.1.1.204 from EC), aldehyde oxidase (1.2.3.1 from EC), nitrate reductase (1.7.1.1 from EC), and sulphite oxidase (1.8.3.1 from EC). The multidomain redox enzyme NAD(P)H:nitrate reductase (NR) catalyses the reduction of nitrate to nitrite in a single polypeptide electron transport chain with electron flow from NAD(P)H-FAD-cytochrome b5-molybdopterin-NO(3). Three forms of NR are known, an NADH-specific enzyme found in higher plants and algae (1.7.1.1 from EC); an NAD(P)H-bispecific enzyme found in higher plants, algae and fungi (1.7.1.2 from EC); and an NADPH-specific enzyme found only in fungi (1.7.1.3 from EC) []. The mitochondrial enzyme sulphite oxidase (sulphite:ferricytochrome c oxidoreductase; 1.8.2.1 from EC) catalyses oxidation of sulphite to sulphate, using cytochrome c as the physiological electron acceptor. Sulphite oxidase consists of two structure/function domains, an N-terminal haem domain, similar to cytochrome b5; and a C-terminal molybdopterin domain [].; GO: 0009055 electron carrier activity, 0055114 oxidation-reduction process; PDB: 1XDY_I 1XDQ_E 2A9A_B 3R19_A 2A9D_A 3HBQ_A 2A9C_B 3HBG_A 2A9B_A 1SOX_B ....
Probab=100.00 E-value=2.3e-35 Score=256.09 Aligned_cols=126 Identities=48% Similarity=0.842 Sum_probs=105.6
Q ss_pred CcEEccCCCccCcccccccCCcCCCCCceeeeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEE
Q 022262 1 MHGQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKA 80 (300)
Q Consensus 1 ~~lqCaGN~R~~~~~~~~~~g~~W~~g~i~~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~ 80 (300)
++++|++|||. +.+|+.++|++++|+||+|+|||++||+++ ++++|.|+|+|.... ...+|.+
T Consensus 44 ~~~~c~~~~~~---------~~~w~~~~i~~~~~~GV~L~dlL~~ag~~~-------~a~~V~~~~~D~~~~-~~~gY~~ 106 (169)
T PF00174_consen 44 VTLHCVGNRRA---------GFPWSAGAIGNAEWTGVPLSDLLEKAGIKP-------DAKYVVFTGADGYPM-THDGYSV 106 (169)
T ss_dssp EEEEETTTTHH---------SHHCCSTSEEEEEEEEEEHHHHHHHHTB-T-------T-EEEEEEESCETTC-TTSSEEE
T ss_pred EEEEecCCCcc---------CccccccceeeeeeEEEcHHHHHHHcCCCC-------CccEEEEEEcCCCcc-cCCCeEE
Confidence 36899999996 889999999999999999999999999984 589999999983222 2348999
Q ss_pred EEechhhcCCCCCeEEEEeeCCccCCCCCCCceEEEecCccCceeeEeeeEEEeeccccCCceee
Q 022262 81 SIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQ 145 (300)
Q Consensus 81 sipl~~a~~~~~~vlLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~ 145 (300)
+||++++++. ++||||+|||+||+.+||+|+|||+|+.+|++|||||++|+|++++.+||||+
T Consensus 107 ~l~~~~~~~~--~~iLA~~~nG~pL~~~~GgPlrlvvP~~~g~~~vKwv~~Ie~~~~~~~g~we~ 169 (169)
T PF00174_consen 107 SLPLEDALEE--DVILAYEMNGEPLPPEHGGPLRLVVPGKYGYRSVKWVSRIEVTDEESPGYWEE 169 (169)
T ss_dssp EEEHHHHHST--CSEEEEEETTEE--GGGTTT-EEE-TTBBGGGS-BSEEEEEEESS---SHHHH
T ss_pred EEEHHHhhcC--CeEEEEccCCccccccccCcEEEecCCeEccCCceECCEEEEEeCCCCCCccC
Confidence 9999999984 89999999999999999999999999999999999999999999999999984
No 12
>cd02108 bact_SO_family_Moco bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.
Probab=100.00 E-value=3.8e-34 Score=251.75 Aligned_cols=110 Identities=36% Similarity=0.654 Sum_probs=101.0
Q ss_pred eeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCeEEEEeeCCccCCCCCC
Q 022262 31 NAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHG 110 (300)
Q Consensus 31 ~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~a~~~~~~vlLAy~mNGepL~~~hG 110 (300)
.++|+||+|+|||++||++. ++++|.|+|+|... +..+|.++|||++++++ ++||||+||||||+.+||
T Consensus 69 ~~~w~Gv~L~dlL~~ag~~~-------~a~~V~~~a~d~~~--~~~~Y~~sipl~~~~~~--~~iLA~~~nGepL~~~hG 137 (185)
T cd02108 69 IGKWGGVPLRTILELVGPLP-------EAKYVVFKCADDFA--GGDRYYESIDMASALHP--QTLLAYEMNGQPLPIKNG 137 (185)
T ss_pred EEEEEEEEHHHHHHHhCCCC-------CCcEEEEEecCcCC--CCCCeEEEEEHHHhcCC--CcEEEEeeCCeECChhcC
Confidence 46999999999999999984 57999999997542 22379999999999986 799999999999999999
Q ss_pred CceEEEecCccCceeeEeeeEEEeeccccC------CceeeeccccC
Q 022262 111 YPLRVVVPGVIGARSVKWLDTINILAEECQ------GFFMQKDYKMF 151 (300)
Q Consensus 111 ~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~------g~w~~~~Y~~~ 151 (300)
||||||+||+||++|||||++|+|++++.+ ||||+++|+.+
T Consensus 138 ~PlRLvvPg~~G~k~vKwl~~I~~~~~~~~~~~~~~g~We~~gy~~~ 184 (185)
T cd02108 138 APLRLRVETQLGYKQAKWVTEIELVNDLPGIGGGKGGYWEDQGYNWF 184 (185)
T ss_pred ceEEEEcCCcccccCceEccEEEEEeccCccccCCCCccccCCcccc
Confidence 999999999999999999999999999999 99999999975
No 13
>cd02109 arch_bact_SO_family_Moco bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.
Probab=100.00 E-value=8.5e-34 Score=248.66 Aligned_cols=112 Identities=37% Similarity=0.608 Sum_probs=104.3
Q ss_pred cCCCCCceeeeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCeEEEEeeC
Q 022262 22 VGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMN 101 (300)
Q Consensus 22 ~~W~~g~i~~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~a~~~~~~vlLAy~mN 101 (300)
++|+ +++++|+||+|+|||+++|+++ ++++|.|+|+| +|.++||+++++++ ++||||+||
T Consensus 62 ~~w~---~~~~~w~Gv~L~dlL~~ag~~~-------~a~~V~~~a~D--------gY~~~ipl~~~~~~--~~iLA~~~n 121 (180)
T cd02109 62 TGWS---KLDVVWEGVSLKDLLEAARPDP-------EATFVMAHSYD--------GYTTNLPLEDLLRE--DSLLATKMD 121 (180)
T ss_pred CCCc---ccCcEEEeeEHHHHHHHcCCCC-------CCeEEEEEecC--------CceEEeEHHHhcCC--CeEEEEeeC
Confidence 5676 4578999999999999999984 58999999998 89999999999985 799999999
Q ss_pred CccCCCCCCCceEEEecCccCceeeEeeeEEEeeccccCCceeeeccccCCC
Q 022262 102 GEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPP 153 (300)
Q Consensus 102 GepL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~~~Y~~~~~ 153 (300)
||||+.+||||||||+||++|++|+|||++|+|++++.+||||++||+...+
T Consensus 122 G~pL~~~~GgPlrlv~P~~~G~k~vKwl~~I~~~~~~~~g~we~~gy~~~~~ 173 (180)
T cd02109 122 GEPLPPEHGGPARLVVPHLYFWKSAKWLRGIEFLDEDEPGFWERRGYHERGD 173 (180)
T ss_pred CeECChhcCceEEEEeCCeeeeeCceECCEEEEEeCCCCCcccccCcCCCCC
Confidence 9999999999999999999999999999999999999999999999998744
No 14
>PRK05363 TMAO/DMSO reductase; Reviewed
Probab=99.98 E-value=1.1e-32 Score=257.76 Aligned_cols=135 Identities=25% Similarity=0.323 Sum_probs=110.8
Q ss_pred eeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCcc---cc----CCCCeEEEEechhhcCCCCCeEEEEeeCCc
Q 022262 31 NAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCK---EE----NGGPYKASIPLSQATNPEADVLLAYEMNGE 103 (300)
Q Consensus 31 ~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~---~~----~~~~Y~~sipl~~a~~~~~~vlLAy~mNGe 103 (300)
++.|+||+|+|||+++|+++ +|+||.|+++|..+ ++ .+..|.++|||++||++ ++||||+||||
T Consensus 143 ~~~W~GvpL~dLLe~agp~~-------~AkyV~f~s~~d~~~~~g~~~~~~~~pY~~~LpL~eAm~p--~tlLA~~mnGe 213 (319)
T PRK05363 143 VIPWIGFPLAKLLKRVEPTS-------NAKYVAFETLYDPEQMPGQRSRFLDWPYVEGLRLDEAMHP--LTLLAVGLYGK 213 (319)
T ss_pred eeEEEeeEHHHHHHHcCCCC-------CCcEEEEEecCccccccCCcccccCCCeeccccHHHHhCc--cceehhhhCCc
Confidence 68999999999999999985 58999999986322 22 12259999999999997 79999999999
Q ss_pred cCCCCCCCceEEEecCccCceeeEeeeEEEeeccccCCceeeeccccCC--CCCCCCCCCCCCCCCccceeceEEEEe
Q 022262 104 PLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFP--PSVNWDNINWKSRRPLMDFPVQCVICS 179 (300)
Q Consensus 104 pL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~~~Y~~~~--~~~~~~~~~~~~~~~i~~~~v~S~I~~ 179 (300)
|||.+|||||||||||+||+||||||++|+|+++++++|||+.+|+.+. .+++++ -.-|-+++...+.|..
T Consensus 214 pLp~qhG~PlRLVVPg~YG~KsvKWI~~Ie~~~~~~~g~We~~~~~eygfyanvnp~-----v~hPrwsqa~er~ig~ 286 (319)
T PRK05363 214 TLPNQNGAPIRLVVPWKYGFKSIKSIVRIRLTEEQPPTTWNLLAPNEYGFYANVNPN-----VDHPRWSQATERRIGE 286 (319)
T ss_pred CCchhhCCceEEEeCCceeeecceeeeEEEEEeCCCCCchhccCccccceeeecCCC-----CCCCccccchhceecc
Confidence 9999999999999999999999999999999999999999999877642 222221 1124455666777753
No 15
>cd00321 SO_family_Moco Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=99.96 E-value=4.5e-29 Score=214.04 Aligned_cols=103 Identities=51% Similarity=0.911 Sum_probs=92.9
Q ss_pred CCCCCceeeeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCeEEEEeeCC
Q 022262 23 GWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNG 102 (300)
Q Consensus 23 ~W~~g~i~~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~a~~~~~~vlLAy~mNG 102 (300)
+|+.+.+++++|+||+|++||+++|+.+ ++++|.|+|.|.. ++.+|.++||+++++++ ++||||+|||
T Consensus 54 ~~~~~~~~~~~~~Gv~L~~lL~~ag~~~-------~~~~v~~~a~d~~---~~dgY~~~i~~~~~~~~--~~iLA~~~nG 121 (156)
T cd00321 54 RWGGGAVSNAEWTGVPLRDLLEEAGPKP-------GARYVVFEGADDP---GGDGYTTSLPLEKALDP--DVLLAYEMNG 121 (156)
T ss_pred CCCCccEeccEEEEEEHHHHHHHcCCCC-------CCeEEEEEeeCCC---CCCCEEEEEEHHHhhCC--CCEEEeeeCC
Confidence 4888888999999999999999999984 5899999999421 22289999999999984 8999999999
Q ss_pred ccCCCCCCCceEEEecCccCceeeEeeeEEEeecc
Q 022262 103 EPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAE 137 (300)
Q Consensus 103 epL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~~ 137 (300)
|||+.+||+|+|||+|+.+|++++|||++|||+++
T Consensus 122 ~pL~~~~GgPlrlv~P~~~g~k~vK~v~~Iev~~~ 156 (156)
T cd00321 122 EPLPPDHGFPLRLVVPGLYGWKSVKWLRRIEVTDE 156 (156)
T ss_pred eECchhhCCceEEEcCCceeeEcceeeeEEEEEcC
Confidence 99999999999999999999999999999999863
No 16
>COG2041 Sulfite oxidase and related enzymes [General function prediction only]
Probab=99.95 E-value=1.2e-28 Score=228.69 Aligned_cols=105 Identities=39% Similarity=0.731 Sum_probs=99.0
Q ss_pred eEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCeEEEEeeCCccCCCCCCCc
Q 022262 33 VWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYP 112 (300)
Q Consensus 33 ~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~a~~~~~~vlLAy~mNGepL~~~hG~P 112 (300)
.|+||+|++||+.+|+++ ++++|.|+++|. ..|++++||+++|+| .+||||+|||+|||++||||
T Consensus 138 ~W~Gv~l~~lL~~~~p~~-------~A~~V~f~~~d~------~~y~~~l~l~~a~~p--~~llA~~~~G~~Lp~~~G~P 202 (271)
T COG2041 138 PWTGVPLRELLDRAGPKD-------NAKYVMFHSLDG------PDYTTGLPLDDALHP--LTLLAYGMNGEPLPPENGAP 202 (271)
T ss_pred ceeeeeHHHHHHHhCcCC-------CCeEEEEEccCc------cccccCCCHHHhcCc--HhhHHHHhcCccCccccCCc
Confidence 799999999999999995 599999999981 129999999999997 69999999999999999999
Q ss_pred eEEEecCccCceeeEeeeEEEeeccccCCceeeeccccCC
Q 022262 113 LRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFP 152 (300)
Q Consensus 113 lRlvvPg~~G~~~vKwl~~Iev~~~~~~g~w~~~~Y~~~~ 152 (300)
+|||+|++||+|++|||.+|+|++++.++||+..+|+.+-
T Consensus 203 lRLvvp~~yg~k~~K~l~~I~l~~~~~~g~We~~gy~~~g 242 (271)
T COG2041 203 LRLVVPGKYGWKSAKWLVRIELTDKPPDGYWERNGYHEYG 242 (271)
T ss_pred eEEEecchhcccCceEEEEEEEecCCCCCchhhcCccccC
Confidence 9999999999999999999999999999999999999864
No 17
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.47 E-value=9.7e-14 Score=114.52 Aligned_cols=95 Identities=23% Similarity=0.354 Sum_probs=84.6
Q ss_pred ccCCcCCCCCceeeeeEEceeHHHHHHHcCCCCCCCccCCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCeEEE
Q 022262 18 TVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLA 97 (300)
Q Consensus 18 ~~~g~~W~~g~i~~a~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~a~~~~~~vlLA 97 (300)
-.+.+||..| |++|+||+|++||+.+|.+ .+.|+|.+++ +|.+.||++|+-.. ++|||
T Consensus 51 ~ete~Pw~~g---n~rf~Gvsls~Ll~~l~ak---------~tslt~iALN--------dY~a~Ip~sDi~ky--npIlA 108 (155)
T COG3915 51 IETETPWTQG---NTRFKGVSLSALLAWLGAK---------QTSLTVIALN--------DYWAEIPYSDIEKY--NPILA 108 (155)
T ss_pred EEEecCcccC---ceeecceeHHHHHHHhhcc---------CcceEEEEec--------ceeccCcHHHhhhc--ccEEE
Confidence 3567899987 6799999999999999976 4679999997 89999999998764 89999
Q ss_pred EeeCCccCCCCCCCceEEEecCc---------cCceeeEeeeEEEe
Q 022262 98 YEMNGEPLNRDHGYPLRVVVPGV---------IGARSVKWLDTINI 134 (300)
Q Consensus 98 y~mNGepL~~~hG~PlRlvvPg~---------~G~~~vKwl~~Iev 134 (300)
|++||.++..+|.+|+++|+|-. |-.+.|..++.|++
T Consensus 109 ~~~nGn~M~IRerGPl~~IYplds~peL~nqvyysr~vWQissi~i 154 (155)
T COG3915 109 IQNNGNYMQIRERGPLWSIYPLDSSPELDNQVYYSRMVWQISSIEI 154 (155)
T ss_pred EEeCCcEEEEeccCceEEEeecCCChhhhhhhhhhhheeeeeeEEe
Confidence 99999999999999999999963 67888999999886
No 18
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=96.03 E-value=0.0044 Score=30.74 Aligned_cols=11 Identities=55% Similarity=1.114 Sum_probs=8.7
Q ss_pred EEcCCCCCcEE
Q 022262 210 ISVDGGKNWVE 220 (300)
Q Consensus 210 VS~DgG~tW~~ 220 (300)
.|.|+|+||+.
T Consensus 2 ~S~D~G~TW~~ 12 (12)
T PF02012_consen 2 YSTDGGKTWKK 12 (12)
T ss_dssp EESSTTSS-EE
T ss_pred EeCCCcccCcC
Confidence 69999999974
No 19
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=91.85 E-value=2 Score=33.38 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=55.8
Q ss_pred EEEecCCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCCCCceeeEEeEEEEECC--
Q 022262 176 VICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIP-- 253 (300)
Q Consensus 176 ~I~~P~~g~~v~~g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~W~~~~~~~-- 253 (300)
.|+.|..++.|.. +++|+|.|-.- .+-..++|.-+.|+.=.+....-..+ .-+|-.|+.++..+
T Consensus 4 ~V~~P~pg~~V~s-p~~V~G~A~~F--Egtv~~rv~D~~g~vl~e~~~~a~~g-----------~~~~g~F~~tv~~~~~ 69 (88)
T PF10648_consen 4 WVTAPAPGDTVSS-PVKVSGKARVF--EGTVNIRVRDGHGEVLAEGFVTATGG-----------APSWGPFEGTVSFPPP 69 (88)
T ss_pred EEcCCCCcCCcCC-CEEEEEEEEEe--eeEEEEEEEcCCCcEEEEeeEEeccC-----------CCcccceEEEEEeCCC
Confidence 4788999999986 79999999986 45888888887885542222222122 45899999999873
Q ss_pred --CccEEEEEeEeCCC
Q 022262 254 --HSTQIVAKAVDTAA 267 (300)
Q Consensus 254 --~~~~i~~RA~D~~G 267 (300)
+.++|.+...|..+
T Consensus 70 ~~~~g~l~v~~~s~~d 85 (88)
T PF10648_consen 70 PPGKGTLEVFEDSAKD 85 (88)
T ss_pred CCCceEEEEEEeCCCC
Confidence 34578777776654
No 20
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=88.25 E-value=4.6 Score=33.80 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=56.0
Q ss_pred ecCCCCeecCC-cEEEEEEEEeCCCCCeEEEEEEc--------CC------CCCcEEeecCCCCCCCccccCCCCCceee
Q 022262 179 SLEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISV--------DG------GKNWVEASRYQKTGIPYIADHMSSDKWAW 243 (300)
Q Consensus 179 ~P~~g~~v~~g-~v~i~G~A~sGgg~~I~rVeVS~--------Dg------G~tW~~A~l~~~~~~~~~~~~~~~~~~aW 243 (300)
.|.+.+++..| .+.++.-.-+ ...|..++|.+ .+ .+.|.--+.-.-.+ +..-.=
T Consensus 25 ~p~~~~~~~~G~~ihfe~~i~d--~~~i~si~VeIH~nfd~H~h~~~~~~~~~~~~~~~~~~~~~---------g~~~~~ 93 (132)
T PF15418_consen 25 FPENCKVATRGDDIHFEADISD--NSAIKSIKVEIHNNFDHHTHSTEAGECEKPWVFEQDYDIYG---------GKKNYD 93 (132)
T ss_pred CCCCCeEEecCCcEEEEEEEEc--ccceeEEEEEEecCcCcccccccccccccCcEEEEEEcccC---------CcccEe
Confidence 68888999888 6999977765 35799999988 33 45676554321111 001111
Q ss_pred EEeEEEEEC---CCccEEEEEeEeCCCCCCCC
Q 022262 244 VFFEVIIDI---PHSTQIVAKAVDTAANVQPE 272 (300)
Q Consensus 244 ~~W~~~~~~---~~~~~i~~RA~D~~G~~QP~ 272 (300)
..+.+++|. +|.|.++.|.||.+||++-.
T Consensus 94 ~h~~i~IPa~a~~G~YH~~i~VtD~~Gn~~~~ 125 (132)
T PF15418_consen 94 FHEHIDIPADAPAGDYHFMITVTDAAGNQTEE 125 (132)
T ss_pred EEEeeeCCCCCCCcceEEEEEEEECCCCEEEE
Confidence 355666665 46789999999999998754
No 21
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=88.06 E-value=0.63 Score=32.65 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=21.6
Q ss_pred EeEEEEEC--CCccEEEEEeEeCCCCCCCC
Q 022262 245 FFEVIIDI--PHSTQIVAKAVDTAANVQPE 272 (300)
Q Consensus 245 ~W~~~~~~--~~~~~i~~RA~D~~G~~QP~ 272 (300)
.|++.++. .+.+.|.++|+|.+||+...
T Consensus 13 ~Ws~t~~~~~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 13 NWSFTVPALADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred cEEEeCCCCCCccEEEEEEEEeCCCCCCCc
Confidence 44455554 46789999999999999875
No 22
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=74.88 E-value=10 Score=35.86 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=37.5
Q ss_pred eEEEEecCCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCC
Q 022262 174 QCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQ 225 (300)
Q Consensus 174 ~S~I~~P~~g~~v~~g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~ 225 (300)
+..+..|-++-.+..|++.+-.+.....+.....+-+|-|+|+||+......
T Consensus 142 ~~~~~~~g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~ 193 (351)
T cd00260 142 AALFTGPGSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVN 193 (351)
T ss_pred eEEEecCcCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCC
Confidence 3444556566667778877777776654456888899999999998776654
No 23
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=67.78 E-value=5.6 Score=26.40 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.9
Q ss_pred cEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeec
Q 022262 190 KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASR 223 (300)
Q Consensus 190 ~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l 223 (300)
.++|+++-.+.+..+|.++++ ++|.+|..+++
T Consensus 12 ~iti~~~f~~~~~~~Ie~i~F--aDGt~w~~~~I 43 (43)
T PF06594_consen 12 SITIKNWFSSDGSYRIEQIEF--ADGTVWTRAQI 43 (43)
T ss_pred EEEEeeeECccCCCcEeEEEE--cCCCEecHHHC
Confidence 799999877654678998875 67999987654
No 24
>TIGR02807 cas6_var CRISPR-associated protein, Cas6-related. Members of this protein family resemble the Cas6 proteins described by TIGR01877 in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis ATCC 29413, Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus DK 1622. Oddly, an orphan member is found in Thiobacillus denitrificans ATCC 25259, whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=64.33 E-value=2.8 Score=37.29 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=18.0
Q ss_pred eEEEEeeCCccCCCCCCCce
Q 022262 94 VLLAYEMNGEPLNRDHGYPL 113 (300)
Q Consensus 94 vlLAy~mNGepL~~~hG~Pl 113 (300)
+=|+|.++|+.||.+|||+|
T Consensus 4 vDl~F~v~g~~lP~DHay~L 23 (190)
T TIGR02807 4 IDLLFPVRGGTVPADHAYML 23 (190)
T ss_pred EEEEeEecCccccccchHHH
Confidence 44889999999999999996
No 25
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=61.83 E-value=18 Score=38.00 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=32.7
Q ss_pred eEEEE-EEcCCCCCcEEeecCCCCCCCccccCCCCCceeeEEeEEEEEC-CCc-cEEEEE
Q 022262 205 IERVD-ISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI-PHS-TQIVAK 261 (300)
Q Consensus 205 I~rVe-VS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~W~~~~~~-~~~-~~i~~R 261 (300)
-..|| ||+|||+||..-...... .+.. .....-.|+.-+|++.. .+. .+|..|
T Consensus 384 y~~VevvStdGg~Twt~~~g~~~~-~~~~---~~~~sg~Wv~~~~DLSayAGqtV~LrFr 439 (645)
T PF05547_consen 384 YAYVEVVSTDGGKTWTPLPGNTTG-NGNP---NGGSSGGWVDASFDLSAYAGQTVQLRFR 439 (645)
T ss_pred eEEEEEEEcCCCceeEecCccccc-cCCC---CCCCccceeEeEeccccccCCeEEEEEE
Confidence 66889 999999999875543221 1110 11112349999999987 433 366666
No 26
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=57.66 E-value=40 Score=31.71 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=17.8
Q ss_pred CeEEEEEEcCCCCCcEEeecCC
Q 022262 204 GIERVDISVDGGKNWVEASRYQ 225 (300)
Q Consensus 204 ~I~rVeVS~DgG~tW~~A~l~~ 225 (300)
.-..+-.|.|+|+||+++....
T Consensus 221 ~~~~~~~S~D~G~tWs~~~~~~ 242 (351)
T cd00260 221 GRRPVYESRDMGTTWTEALGTL 242 (351)
T ss_pred CcEEEEEEcCCCcCcccCcCCc
Confidence 3456889999999999987754
No 27
>PF09559 Cas6: Cas6 Crispr; InterPro: IPR014174 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this entry resemble the Cas6 proteins described by IPR010156 from INTERPRO in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis (strain ATCC 29413/PCC 7937), Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus (strain DK 1622). Oddly, an orphan member is found in Thiobacillus denitrificans (strain ATCC 25259), whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=55.94 E-value=4.4 Score=36.22 Aligned_cols=18 Identities=39% Similarity=0.850 Sum_probs=16.8
Q ss_pred EEEeeCCccCCCCCCCce
Q 022262 96 LAYEMNGEPLNRDHGYPL 113 (300)
Q Consensus 96 LAy~mNGepL~~~hG~Pl 113 (300)
|.|.++|+.||.+|||+|
T Consensus 3 l~F~i~g~~LP~DH~y~L 20 (195)
T PF09559_consen 3 LVFSIRGKTLPADHAYAL 20 (195)
T ss_pred EEEEeCCcccCcccHHHH
Confidence 789999999999999985
No 28
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=54.23 E-value=13 Score=26.55 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=19.6
Q ss_pred EeEEEEEC---CCccEEEEEeEeCCCCCCCC
Q 022262 245 FFEVIIDI---PHSTQIVAKAVDTAANVQPE 272 (300)
Q Consensus 245 ~W~~~~~~---~~~~~i~~RA~D~~G~~QP~ 272 (300)
.|...++- .+.++|.++|+|.+||.--.
T Consensus 11 ~~~~~~P~~~~dg~yt~~v~a~D~AGN~~~~ 41 (60)
T PF12245_consen 11 VWSTVIPENDADGEYTLTVTATDKAGNTSSS 41 (60)
T ss_pred ceeccccCccCCccEEEEEEEEECCCCEEEe
Confidence 34444443 34579999999999997643
No 29
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=54.04 E-value=88 Score=24.66 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=40.1
Q ss_pred CCcEEEEEEEEeCCCCCeEEEEEEcCC--CCCcEEeecCCCCCCCccccCCCCCceeeEEeEEEEEC-CCccEEEEEeEe
Q 022262 188 PGKAKVSGYAVSGGGRGIERVDISVDG--GKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI-PHSTQIVAKAVD 264 (300)
Q Consensus 188 ~g~v~i~G~A~sGgg~~I~rVeVS~Dg--G~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~W~~~~~~-~~~~~i~~RA~D 264 (300)
.|.+.|+ +.++.++.. .+++|.+|+ |+.-....+.. .+ .--.|..-+..+.+ .+.++|..+...
T Consensus 44 ~g~y~~~-~~~a~~~~~-~~~~l~id~~~g~~~~~~~~~~-tg----------~w~~~~~~~~~v~l~~G~h~i~l~~~~ 110 (125)
T PF03422_consen 44 AGTYTLT-IRYANGGGG-GTIELRIDGPDGTLIGTVSLPP-TG----------GWDTWQTVSVSVKLPAGKHTIYLVFNG 110 (125)
T ss_dssp SEEEEEE-EEEEESSSS-EEEEEEETTTTSEEEEEEEEE--ES----------STTEEEEEEEEEEEESEEEEEEEEESS
T ss_pred CceEEEE-EEEECCCCC-cEEEEEECCCCCcEEEEEEEcC-CC----------CccccEEEEEEEeeCCCeeEEEEEEEC
Confidence 4677777 333333334 999999999 65555555532 22 12235555556665 455688888776
Q ss_pred CCC
Q 022262 265 TAA 267 (300)
Q Consensus 265 ~~G 267 (300)
..+
T Consensus 111 ~~~ 113 (125)
T PF03422_consen 111 GDG 113 (125)
T ss_dssp SSS
T ss_pred CCC
Confidence 654
No 30
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=49.79 E-value=1.3e+02 Score=26.99 Aligned_cols=37 Identities=35% Similarity=0.425 Sum_probs=27.0
Q ss_pred CCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCC
Q 022262 188 PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQ 225 (300)
Q Consensus 188 ~g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~ 225 (300)
.|.+.+..|.-. .+..-..+.+|.|+|+||+......
T Consensus 118 ~G~l~~~~~~~~-~~~~~~~~~~S~D~G~tW~~~~~~~ 154 (275)
T PF13088_consen 118 DGRLIAPYYHES-GGSFSAFVYYSDDGGKTWSSGSPIP 154 (275)
T ss_dssp TTEEEEEEEEES-SCEEEEEEEEESSTTSSEEEEEECE
T ss_pred CCCEEEEEeecc-ccCcceEEEEeCCCCceeecccccc
Confidence 566555544443 3557888999999999998887753
No 31
>cd02847 Chitobiase_C_term Chitobiase C-terminus domain. Chitobiase (AKA N-acetylglucosaminidase) digests the beta, 1-4 glycosidic bonds of the N-acetylglucosamine (NAG) oligomers found in chitin, an important structural element of fungal cell wall and arthropod exoskeletons. It is thought to proceed through an acid-base reaction mechanism, in which one protein carboxylate acts as catalytic acid, while the nucleophile is the polar acetamido group of the sugar in a substrate-assisted reaction with retention of the anomeric configuration. The C-terminus of chitobiase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chit
Probab=49.62 E-value=19 Score=27.33 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=23.4
Q ss_pred CCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeec
Q 022262 181 EDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASR 223 (300)
Q Consensus 181 ~~g~~v~~g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l 223 (300)
..|..+..|.+.+. .++-| ..+|.|+|||++|+..+-
T Consensus 14 ~pga~i~~g~l~~n-~~~pg-----~~i~Yt~dgg~~w~~Y~~ 50 (78)
T cd02847 14 VPGAKVENGKLEMN-VSLPG-----LTLQYSTDGGKNWNIYDA 50 (78)
T ss_pred CCCeEEEcCEEEEe-ccCCC-----cEEEEEecCCccCeeccc
Confidence 33445555544332 25553 368999999999998543
No 32
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=48.36 E-value=39 Score=28.18 Aligned_cols=35 Identities=23% Similarity=0.112 Sum_probs=28.8
Q ss_pred ccceeceEEEEecCC--CCeecCCcEEEEEEEEeCCC
Q 022262 168 LMDFPVQCVICSLED--VNVMKPGKAKVSGYAVSGGG 202 (300)
Q Consensus 168 i~~~~v~S~I~~P~~--g~~v~~g~v~i~G~A~sGgg 202 (300)
-..|.+||.+.+|-. ++.|++|+|++...|.++..
T Consensus 83 ~~~mAPNS~f~~~i~~~~~~lk~G~Y~l~~~~~~~~~ 119 (140)
T PF11797_consen 83 NMQMAPNSNFNFPIPLGGKKLKPGKYTLKITAKSGKK 119 (140)
T ss_pred CCEECCCCeEEeEecCCCcCccCCEEEEEEEEEcCCc
Confidence 356889999988854 67999999999999998644
No 33
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=48.18 E-value=1.3e+02 Score=25.66 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=42.2
Q ss_pred ecCCCCeecCCcEEEEEEEEeCC-CCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCCCCceeeEEeEEE--EECCCc
Q 022262 179 SLEDVNVMKPGKAKVSGYAVSGG-GRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVI--IDIPHS 255 (300)
Q Consensus 179 ~P~~g~~v~~g~v~i~G~A~sGg-g~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~W~~~--~~~~~~ 255 (300)
.+.+|..+. +.+.|.=-+.+.. +..|.+| +++||.++..-.|..... ....+.-...++- +...+-
T Consensus 56 ~~~~g~~v~-~~~~i~i~~tD~~~~~~i~sv--~l~Gg~~~d~v~ls~~~~--------~~~~~~~~yp~~fpsle~~~~ 124 (158)
T PF13750_consen 56 SVANGSTVY-GLVNISINVTDNSDDSKITSV--SLTGGPASDSVSLSWTNK--------GNGVYTLEYPRIFPSLEADDS 124 (158)
T ss_pred ccCCCcccc-ceeeeEEEEEeCCCCceEEEE--EEECCcccceEEEeeEec--------cCceEEeecccccCCcCCCCe
Confidence 344555544 2333433333322 2234444 457787776665543321 0112322222221 011345
Q ss_pred cEEEEEeEeCCCCCCCCCc
Q 022262 256 TQIVAKAVDTAANVQPESV 274 (300)
Q Consensus 256 ~~i~~RA~D~~G~~QP~~~ 274 (300)
++|.|.|+|.+||+--...
T Consensus 125 YtLtV~a~D~aGN~~~~si 143 (158)
T PF13750_consen 125 YTLTVSATDKAGNQSTKSI 143 (158)
T ss_pred EEEEEEEEecCCCEEEEEE
Confidence 7999999999999865443
No 34
>KOG3063 consensus Membrane coat complex Retromer, subunit VPS26 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.92 E-value=40 Score=31.26 Aligned_cols=55 Identities=27% Similarity=0.574 Sum_probs=43.5
Q ss_pred CCeEEEEe-eCCccCCCCCCCceEEEecCc---c-----Cc-eeeEeeeEEEeeccccCCceeeec
Q 022262 92 ADVLLAYE-MNGEPLNRDHGYPLRVVVPGV---I-----GA-RSVKWLDTINILAEECQGFFMQKD 147 (300)
Q Consensus 92 ~~vlLAy~-mNGepL~~~hG~PlRlvvPg~---~-----G~-~~vKwl~~Iev~~~~~~g~w~~~~ 147 (300)
.+++.-|+ |||.|..-+- -|+||..-|+ . .. -|||+--.+.+.+++..-||-++.
T Consensus 226 ~eTiakyeIMDGapvrGEs-IPiRlFLagYdlTPtmrdinkkFsVkyyLnLVlvDeedRRYFKQqE 290 (301)
T KOG3063|consen 226 TETIAKYEIMDGAPVRGES-IPIRLFLAGYDLTPTMRDINKKFSVKYYLNLVLVDEEDRRYFKQQE 290 (301)
T ss_pred cceeeeEEeccCCCcCCCe-eeeEEEecccCCCcchhhhcceeeeeeEEEEEEEchhhhhhhhhee
Confidence 46888888 8999987764 8999999997 1 22 289999999999998777766543
No 35
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=44.96 E-value=1.1e+02 Score=23.06 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=19.3
Q ss_pred EEEeCCCCCeEEEEEEcCCCCCcEEeecC
Q 022262 196 YAVSGGGRGIERVDISVDGGKNWVEASRY 224 (300)
Q Consensus 196 ~A~sGgg~~I~rVeVS~DgG~tW~~A~l~ 224 (300)
+-+.||...|++|||.-.+...|..-...
T Consensus 18 v~n~gG~gdi~~Vevk~~~s~~W~~m~r~ 46 (82)
T PF01357_consen 18 VKNVGGDGDIKAVEVKQSGSGNWIPMKRS 46 (82)
T ss_dssp EEECCTTS-EEEEEEEETTSSS-EE-EEE
T ss_pred EEEcCCCccEEEEEEEeCCCCCceEeecC
Confidence 34455555799999998888889987654
No 36
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=44.06 E-value=16 Score=34.77 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=13.7
Q ss_pred EEEEEcCCCCCcEEeecCC
Q 022262 207 RVDISVDGGKNWVEASRYQ 225 (300)
Q Consensus 207 rVeVS~DgG~tW~~A~l~~ 225 (300)
.+=+|.|+|+||+..+...
T Consensus 254 ~l~~S~DgGktW~~~~~~~ 272 (302)
T PF14870_consen 254 TLLVSTDGGKTWQKDRVGE 272 (302)
T ss_dssp -EEEESSTTSS-EE-GGGT
T ss_pred cEEEeCCCCccceECcccc
Confidence 5778999999999987654
No 37
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=43.27 E-value=31 Score=29.58 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=21.0
Q ss_pred EeEEEEEC----CCccEEEE-EeEeCCCCCCC
Q 022262 245 FFEVIIDI----PHSTQIVA-KAVDTAANVQP 271 (300)
Q Consensus 245 ~W~~~~~~----~~~~~i~~-RA~D~~G~~QP 271 (300)
.|.|.|.. .|.+.|.+ +|+|.+||..-
T Consensus 2 ~~~~~fd~~~l~dG~Y~l~~~~a~D~agN~~~ 33 (158)
T PF13750_consen 2 NYTYTFDLSTLPDGSYTLTVVTATDAAGNTST 33 (158)
T ss_pred cEEEEEEeCcCCCccEEEEEEEEEecCCCEEE
Confidence 36677766 46679999 89999999753
No 38
>COG4719 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.08 E-value=13 Score=32.03 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=23.4
Q ss_pred ecCCc-EEEEEEEEeCCCCCeEEEEEEcCCCCCcEEee
Q 022262 186 MKPGK-AKVSGYAVSGGGRGIERVDISVDGGKNWVEAS 222 (300)
Q Consensus 186 v~~g~-v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~ 222 (300)
|++++ |...|.+.+ .-+..+||+|+|++|+.-.
T Consensus 96 ip~~t~yv~a~~dva----~ka~~~~sIDgG~sf~~nP 129 (176)
T COG4719 96 IPSNTSYVDAGRDVA----LKAAFEVSIDGGESFQGNP 129 (176)
T ss_pred cCCCcEEEechhhhh----hhhcEEEEecCCcccccCC
Confidence 45553 666666654 3467899999999998653
No 39
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=43.01 E-value=27 Score=25.28 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=18.3
Q ss_pred cCC-cEEEEEEEEeCCCCCeEEEEEEc
Q 022262 187 KPG-KAKVSGYAVSGGGRGIERVDISV 212 (300)
Q Consensus 187 ~~g-~v~i~G~A~sGgg~~I~rVeVS~ 212 (300)
.+| .+|+. +..+|++.++||.+|-
T Consensus 11 EpGVyiTl~--~~p~G~~~LkRVRFSR 35 (59)
T PF08381_consen 11 EPGVYITLV--SLPDGGNDLKRVRFSR 35 (59)
T ss_pred CCeeEEEEE--ECCCCCeeEEEEEEhh
Confidence 366 56665 6677788999999985
No 40
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=41.96 E-value=1e+02 Score=24.68 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=46.8
Q ss_pred ceEEEEecCCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCCCCceeeEEeEEEEEC
Q 022262 173 VQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI 252 (300)
Q Consensus 173 v~S~I~~P~~g~~v~~g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~W~~~~~~ 252 (300)
++|+... .++..| .|.+.|+-+|+. +-..|..|+|+-+||++..-......+.. ...-.+-+|+|.+++
T Consensus 9 Le~~~~~-~~~~~L-~G~V~V~Nlaye----K~V~VryT~D~W~t~~d~~a~y~~~~~~~-----~~~~~~d~F~F~i~l 77 (113)
T PF03370_consen 9 LESVSLS-PDQQSL-SGTVRVRNLAYE----KEVTVRYTFDNWRTFSDVPASYVSSCPGP-----SPSGNYDRFSFSIPL 77 (113)
T ss_dssp EEEEEEC---SSEE-EEEEEEE-SSSS----EEEEEEEETSCTSSCCEEEEEEEE---EE-----STTSSEEEEEEEEE-
T ss_pred EEEEEEc-CCCCEE-EEEEEEEcCCCC----eEEEEEEeeCCCCceeEEeeEEeccccCC-----CCCCcccEEEEEEEC
Confidence 4554443 223333 378889988874 78889999999999977654321100000 013456799999987
Q ss_pred C------C-ccEEEEEeE
Q 022262 253 P------H-STQIVAKAV 263 (300)
Q Consensus 253 ~------~-~~~i~~RA~ 263 (300)
+ + ..++++|-.
T Consensus 78 ~~~~~~~~~~lef~I~Y~ 95 (113)
T PF03370_consen 78 PDLLPPEGGRLEFCIRYE 95 (113)
T ss_dssp SSE--T-TS-SEEEEEEE
T ss_pred CcccccCCceEEEEEEEE
Confidence 3 2 248888874
No 41
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=40.99 E-value=41 Score=23.50 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=19.5
Q ss_pred EEEEEC--CCccEEEEEeEeCCCCCCCCC
Q 022262 247 EVIIDI--PHSTQIVAKAVDTAANVQPES 273 (300)
Q Consensus 247 ~~~~~~--~~~~~i~~RA~D~~G~~QP~~ 273 (300)
++.++. +|.++|.|||.|..|......
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 666766 566899999999999877653
No 42
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=40.58 E-value=1.1e+02 Score=24.25 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=40.3
Q ss_pred eceEEEEecCC-CCeecC-CcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCCCCceeeEEeEEE
Q 022262 172 PVQCVICSLED-VNVMKP-GKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVI 249 (300)
Q Consensus 172 ~v~S~I~~P~~-g~~v~~-g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~W~~~ 249 (300)
.|+..|.+|-+ |..... |.+ . ..+=|..|+|+.+ |+.=..|++...- +.. =.++|.
T Consensus 16 ~vk~li~HPMetGl~~d~tg~~------i--Pa~~I~~v~v~~n-g~~v~~~~~~~si-----S~N--------P~l~F~ 73 (100)
T PF08770_consen 16 EVKALISHPMETGLRKDQTGKY------I--PAHFIEEVEVTYN-GKPVFRADWGPSI-----SEN--------PYLRFS 73 (100)
T ss_dssp EEEEEE----B-S-BB-TTS-B------B----B-EEEEEEEET-TEEEEEEEE-TTB------SS---------EEEEE
T ss_pred EEEEEEECCCccccccCCCCCC------C--ChHheEEEEEEEC-CEEEEEEEeCCcc-----cCC--------CcEEEE
Confidence 47888888843 222211 100 0 1234788888864 5566666665442 111 167777
Q ss_pred EECCCccEEEEEeEeCCCCCC
Q 022262 250 IDIPHSTQIVAKAVDTAANVQ 270 (300)
Q Consensus 250 ~~~~~~~~i~~RA~D~~G~~Q 270 (300)
+......+|.++.+|..|++-
T Consensus 74 ~~~~~~g~l~v~~~Dn~G~~~ 94 (100)
T PF08770_consen 74 FKGKKSGTLTVTWTDNKGNSF 94 (100)
T ss_dssp EEESSSEEEEEEEEETTS-EE
T ss_pred EecCCCcEEEEEEEECCCCEE
Confidence 877544499999999999863
No 43
>PF13290 CHB_HEX_C_1: Chitobiase/beta-hexosaminidase C-terminal domain
Probab=36.81 E-value=70 Score=23.38 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCcEEeecCCCCCCCccccCCCCCceeeEEeEEEEECCCccEEEEEeEeCCCCCCC
Q 022262 207 RVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQP 271 (300)
Q Consensus 207 rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~W~~~~~~~~~~~i~~RA~D~~G~~QP 271 (300)
.+..++|| ..|..... .+.-.+.+.+..+|.+||+|.+|+..+
T Consensus 22 ~IyYT~DG-s~Pt~~S~---------------------~Y~~Pi~i~~~ttVka~a~~~~g~~s~ 64 (67)
T PF13290_consen 22 TIYYTTDG-SEPTPSSP---------------------LYTGPITITGTTTVKARAFDPDGNSSD 64 (67)
T ss_pred EEEEEcCC-CccccCCC---------------------eeccCEEecCCEEEEEEEEcCCCcccc
Confidence 78888985 46665321 112233445668999999999998654
No 44
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=33.66 E-value=36 Score=35.22 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=36.4
Q ss_pred CeEEEEechhhcCCCCCeEEEEeeCCccCCCCCCCceEEEecCccCceeeEeeeEEEeec
Q 022262 77 PYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILA 136 (300)
Q Consensus 77 ~Y~~sipl~~a~~~~~~vlLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~Iev~~ 136 (300)
.|.+.+.-..- ..+.++|.-+++++.|| ||||+||-.|-+-++-=+...+..+
T Consensus 634 kF~v~ld~~~~--~nN~I~liCklddk~lP-----Pl~lsVP~~YPaq~~~vdr~~~y~a 686 (742)
T KOG4274|consen 634 KFEVDLDHQRH--DNNHIILICKLDDKQLP-----PLRLSVPTTYPAQNVTVDRAVIYLA 686 (742)
T ss_pred ceeecCCcccc--cCCeeEEEEEecCCCCC-----CeeeeccccccccchhhhhHHHhhh
Confidence 45444433332 23479999999999999 8999999999988843333333333
No 45
>PF09937 DUF2169: Uncharacterized protein conserved in bacteria (DUF2169); InterPro: IPR018683 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.91 E-value=67 Score=30.36 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=28.5
Q ss_pred cCCCCeecCC-cEEEEEEEEeCCCCCeEEEEEEcCCCC
Q 022262 180 LEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISVDGGK 216 (300)
Q Consensus 180 P~~g~~v~~g-~v~i~G~A~sGgg~~I~rVeVS~DgG~ 216 (300)
..+-...|++ .+.|.|.||+-+|+++.+++|++.=|.
T Consensus 50 ~~D~~~~Kp~~dvlv~G~A~ap~g~p~~~~~V~v~vg~ 87 (297)
T PF09937_consen 50 ESDLAPPKPRTDVLVNGHAYAPGGRPVTSWDVRVRVGD 87 (297)
T ss_pred hhhccCCCCCceEEEEEEEeCCCCCccceEEEEEEEcC
Confidence 3333334555 699999999999999999999888774
No 46
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=23.70 E-value=3.5e+02 Score=23.90 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=35.9
Q ss_pred CC-cEEEEEEEEeCCCCCe-EEEEEEcCCCCCcEEeecCCCCCCCccccCCCCCceeeEEeEEEEEC--CCccEEEEEeE
Q 022262 188 PG-KAKVSGYAVSGGGRGI-ERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI--PHSTQIVAKAV 263 (300)
Q Consensus 188 ~g-~v~i~G~A~sGgg~~I-~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~W~~~~~~--~~~~~i~~RA~ 263 (300)
.| .++|+=-.|..|...| +.|-..-.++++|++..+....+ -+|+..+++ .|.++..+.||
T Consensus 25 vGe~v~V~Adif~DGHD~l~A~l~~r~~~~~~w~~vpM~~~gn---------------DrW~a~f~~~~~G~~~f~VeAW 89 (187)
T PF11896_consen 25 VGEPVPVSADIFRDGHDALAAELLWRHPGEREWQEVPMTPLGN---------------DRWEASFTPDRPGRYEFRVEAW 89 (187)
T ss_dssp TT-EEEEEEEE--SSSS-EEEEEEEE-TTS-B----B-EESTS----------------EEEEEEE--SSEEEEEEEEEE
T ss_pred cCCeEEEEEEEEecCCCcEEEEEEEECCCCCcceeeccccCCC---------------CEEEEEEECCCceeEEEEEEEE
Confidence 35 6889988898644443 33445667889999998876543 489999999 45679999998
Q ss_pred eC
Q 022262 264 DT 265 (300)
Q Consensus 264 D~ 265 (300)
.+
T Consensus 90 ~D 91 (187)
T PF11896_consen 90 VD 91 (187)
T ss_dssp E-
T ss_pred ec
Confidence 75
No 47
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=23.21 E-value=68 Score=23.70 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.8
Q ss_pred CccEEEEEeEeCCCCCC
Q 022262 254 HSTQIVAKAVDTAANVQ 270 (300)
Q Consensus 254 ~~~~i~~RA~D~~G~~Q 270 (300)
|.+.|...|+|.+||+.
T Consensus 57 G~t~V~ytA~D~~GN~a 73 (81)
T PF02494_consen 57 GTTTVTYTATDAAGNSA 73 (81)
T ss_pred ceEEEEEEEEECCCCEE
Confidence 45789999999999975
No 48
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=22.36 E-value=1.7e+02 Score=21.26 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=26.6
Q ss_pred cCCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCCCCceeeEEeEEEEECCCccEEE
Q 022262 180 LEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV 259 (300)
Q Consensus 180 P~~g~~v~~g~v~i~G~A~sGgg~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~W~~~~~~~~~~~i~ 259 (300)
|..|.......++|.- +.. | ..+.-++||+..-. .|....=.+.+.....|.
T Consensus 7 p~~G~~~~~~~v~l~~-~~~--~---~~I~YT~DGs~Pt~----------------------~s~~Y~~Pi~i~~~~~vk 58 (75)
T PF03174_consen 7 PPSGTYDEGQTVTLSS-DTP--G---ATIYYTLDGSEPTK----------------------SSPLYTGPITIPESGTVK 58 (75)
T ss_dssp ---EEEEETTEEEEE--SST--T---SEEEEESSSSSS--------------------------EE--CCC--B--S--E
T ss_pred CCCCcEecCeEEEEEe-CCC--C---CEEEEEcCCCcccc----------------------cCcccCcCEEeCCCcEEE
Confidence 4444333334566665 222 2 27888888875411 223333333344455699
Q ss_pred EEeEeCCCCCCC
Q 022262 260 AKAVDTAANVQP 271 (300)
Q Consensus 260 ~RA~D~~G~~QP 271 (300)
+||+|..|+.-.
T Consensus 59 a~a~~~~g~~s~ 70 (75)
T PF03174_consen 59 ARAFDNGGNVSE 70 (75)
T ss_dssp EEEE-TTS-B--
T ss_pred EEEEcCCCCcCc
Confidence 999999987654
No 49
>COG5475 Uncharacterized small protein [Function unknown]
Probab=21.97 E-value=73 Score=22.86 Aligned_cols=31 Identities=29% Similarity=0.607 Sum_probs=23.7
Q ss_pred CccCCCCCCCceEEEecCc--cCceeeEeeeEEE
Q 022262 102 GEPLNRDHGYPLRVVVPGV--IGARSVKWLDTIN 133 (300)
Q Consensus 102 GepL~~~hG~PlRlvvPg~--~G~~~vKwl~~Ie 133 (300)
|+-.....|+| |++|-|. .|+.-+||..+--
T Consensus 8 gdvV~lKsGGP-~Mtvs~~ss~Gmy~C~Wf~g~g 40 (60)
T COG5475 8 GDVVTLKSGGP-RMTVSGYSSDGMYECRWFDGYG 40 (60)
T ss_pred CcEEEeecCCc-eEEEeccccCCeEEEEEecCCC
Confidence 56667788999 7777776 4899999976554
No 50
>smart00602 VPS10 VPS10 domain.
Probab=21.93 E-value=1.1e+02 Score=32.05 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=17.4
Q ss_pred eEEEEEEcCCCCCcEEeecCCC
Q 022262 205 IERVDISVDGGKNWVEASRYQK 226 (300)
Q Consensus 205 I~rVeVS~DgG~tW~~A~l~~~ 226 (300)
...|-.|+|.|+||...++..+
T Consensus 415 t~~i~YS~d~G~tW~~~~~~~~ 436 (612)
T smart00602 415 TNELKYSTDEGKTWKTYTFTST 436 (612)
T ss_pred ccEEEEECCCCCceeEeecccc
Confidence 3355789999999999988643
No 51
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=20.74 E-value=3.4e+02 Score=19.76 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=36.5
Q ss_pred EEEEEEEeCC-CCCeEEEEEEcCCCCCcEEeecCCCCCCCccccCCCCCceeeEEeEEEEECCCccEEEEEeEeC
Q 022262 192 KVSGYAVSGG-GRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDT 265 (300)
Q Consensus 192 ~i~G~A~sGg-g~~I~rVeVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~W~~~~~~~~~~~i~~RA~D~ 265 (300)
+|+|.-.+.. +.+|.-|-|.+.+.+ .....+..| .|++..+ .+.+.|.+++..=
T Consensus 1 ti~G~V~d~~t~~pl~~a~V~~~~~~---~~~~Td~~G----------------~F~i~~~-~g~~~l~is~~Gy 55 (88)
T PF13715_consen 1 TISGKVVDSDTGEPLPGATVYLKNTK---KGTVTDENG----------------RFSIKLP-EGDYTLKISYIGY 55 (88)
T ss_pred CEEEEEEECCCCCCccCeEEEEeCCc---ceEEECCCe----------------EEEEEEc-CCCeEEEEEEeCE
Confidence 4778777766 789999999999886 344444544 6667633 4456777766543
Done!