Query 022263
Match_columns 300
No_of_seqs 245 out of 1647
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:17:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01337 MDH_glyoxysomal_mitoch 100.0 1E-67 2.3E-72 488.8 28.9 272 29-300 1-272 (310)
2 TIGR01772 MDH_euk_gproteo mala 100.0 1.3E-66 2.9E-71 482.1 27.4 271 30-300 1-272 (312)
3 COG0039 Mdh Malate/lactate deh 100.0 2.4E-64 5.2E-69 462.2 25.4 259 29-300 1-274 (313)
4 PLN00106 malate dehydrogenase 100.0 2.8E-63 6.1E-68 461.6 30.2 274 27-300 17-290 (323)
5 PTZ00325 malate dehydrogenase; 100.0 2.2E-60 4.7E-65 441.9 28.7 273 25-300 5-279 (321)
6 cd05290 LDH_3 A subgroup of L- 100.0 2.3E-60 4.9E-65 440.4 26.6 256 30-300 1-276 (307)
7 KOG1495 Lactate dehydrogenase 100.0 2.8E-60 6.1E-65 417.9 23.9 258 27-300 19-297 (332)
8 TIGR01759 MalateDH-SF1 malate 100.0 5.5E-60 1.2E-64 440.1 26.2 264 26-300 1-289 (323)
9 KOG1494 NAD-dependent malate d 100.0 4.8E-60 1E-64 418.3 24.1 287 14-300 14-301 (345)
10 PRK05086 malate dehydrogenase; 100.0 2.8E-59 6.1E-64 434.5 28.9 270 29-300 1-272 (312)
11 PRK05442 malate dehydrogenase; 100.0 8.3E-60 1.8E-64 439.4 24.4 263 26-299 2-288 (326)
12 cd05293 LDH_1 A subgroup of L- 100.0 2.7E-59 5.9E-64 434.2 26.6 260 27-300 2-280 (312)
13 PLN02602 lactate dehydrogenase 100.0 6.4E-59 1.4E-63 436.7 27.7 258 29-300 38-315 (350)
14 TIGR01771 L-LDH-NAD L-lactate 100.0 5.4E-59 1.2E-63 430.1 23.7 253 33-300 1-271 (299)
15 cd00704 MDH Malate dehydrogena 100.0 2.7E-58 5.8E-63 429.3 23.7 261 29-300 1-289 (323)
16 PLN00112 malate dehydrogenase 100.0 3.3E-58 7.1E-63 440.8 24.6 264 25-300 97-386 (444)
17 PRK00066 ldh L-lactate dehydro 100.0 1.5E-57 3.2E-62 423.5 27.3 260 26-300 4-280 (315)
18 TIGR01757 Malate-DH_plant mala 100.0 6.9E-58 1.5E-62 432.7 24.9 265 24-300 40-330 (387)
19 cd01338 MDH_choloroplast_like 100.0 2.4E-57 5.2E-62 422.7 25.8 263 27-300 1-287 (322)
20 cd05291 HicDH_like L-2-hydroxy 100.0 2E-56 4.4E-61 415.0 25.4 257 29-300 1-274 (306)
21 PTZ00117 malate dehydrogenase; 100.0 2.1E-55 4.5E-60 410.0 28.2 262 26-300 3-281 (319)
22 cd00300 LDH_like L-lactate deh 100.0 9.3E-56 2E-60 409.3 25.3 256 31-300 1-269 (300)
23 PTZ00082 L-lactate dehydrogena 100.0 6.4E-55 1.4E-59 406.6 27.5 261 27-300 5-287 (321)
24 TIGR01763 MalateDH_bact malate 100.0 4.2E-55 9.1E-60 405.5 25.7 257 29-300 2-272 (305)
25 TIGR01758 MDH_euk_cyt malate d 100.0 5.9E-55 1.3E-59 407.0 24.6 262 30-300 1-289 (324)
26 cd01336 MDH_cytoplasmic_cytoso 100.0 5.7E-55 1.2E-59 407.6 22.2 263 27-300 1-291 (325)
27 cd05295 MDH_like Malate dehydr 100.0 5.2E-55 1.1E-59 418.6 21.9 261 26-300 121-417 (452)
28 cd05292 LDH_2 A subgroup of L- 100.0 8E-54 1.7E-58 397.8 26.3 257 29-300 1-275 (308)
29 cd01339 LDH-like_MDH L-lactate 100.0 9.3E-52 2E-56 382.8 25.3 257 31-300 1-269 (300)
30 PLN00135 malate dehydrogenase 100.0 7.5E-52 1.6E-56 382.9 21.9 234 56-300 15-271 (309)
31 cd05294 LDH-like_MDH_nadp A la 100.0 3.8E-51 8.3E-56 379.8 26.5 259 29-300 1-276 (309)
32 PRK06223 malate dehydrogenase; 100.0 3.4E-51 7.5E-56 380.0 25.6 260 28-300 2-273 (307)
33 TIGR01756 LDH_protist lactate 100.0 9.5E-51 2.1E-55 376.4 21.3 234 56-300 17-274 (313)
34 cd00650 LDH_MDH_like NAD-depen 100.0 5.8E-46 1.3E-50 338.0 24.7 224 31-300 1-232 (263)
35 KOG1496 Malate dehydrogenase [ 100.0 2.7E-46 5.9E-51 324.7 15.7 265 27-299 3-292 (332)
36 PF00056 Ldh_1_N: lactate/mala 100.0 1.4E-33 3E-38 233.7 12.9 139 29-172 1-141 (141)
37 PF02866 Ldh_1_C: lactate/mala 99.9 4.3E-28 9.4E-33 207.7 9.8 121 174-300 1-136 (174)
38 PRK15076 alpha-galactosidase; 99.9 5.9E-25 1.3E-29 212.5 14.3 164 28-204 1-199 (431)
39 cd05197 GH4_glycoside_hydrolas 99.9 4.4E-24 9.5E-29 205.8 15.7 175 29-219 1-206 (425)
40 cd05296 GH4_P_beta_glucosidase 99.9 1.6E-23 3.5E-28 201.6 14.8 166 29-205 1-197 (419)
41 cd05298 GH4_GlvA_pagL_like Gly 99.9 5.8E-22 1.3E-26 191.5 22.7 163 29-202 1-193 (437)
42 cd05297 GH4_alpha_glucosidase_ 99.9 3.9E-21 8.5E-26 185.9 15.6 166 29-204 1-197 (423)
43 PF02056 Glyco_hydro_4: Family 99.8 2.8E-18 6.1E-23 147.1 13.3 152 30-191 1-183 (183)
44 COG1486 CelF Alpha-galactosida 99.8 9.5E-18 2.1E-22 159.8 15.0 166 27-202 2-197 (442)
45 PF02737 3HCDH_N: 3-hydroxyacy 98.9 6.8E-09 1.5E-13 89.4 8.4 118 30-175 1-137 (180)
46 COG1004 Ugd Predicted UDP-gluc 98.9 2.2E-08 4.7E-13 94.6 12.0 114 29-154 1-130 (414)
47 COG1250 FadB 3-hydroxyacyl-CoA 98.8 1.2E-08 2.7E-13 94.3 8.5 141 28-193 3-178 (307)
48 PRK07066 3-hydroxybutyryl-CoA 98.7 9.9E-08 2.1E-12 89.3 11.1 119 28-173 7-140 (321)
49 PRK07819 3-hydroxybutyryl-CoA 98.6 2.7E-07 5.9E-12 85.1 11.2 120 28-175 5-144 (286)
50 PF03721 UDPG_MGDP_dh_N: UDP-g 98.6 9.8E-08 2.1E-12 82.6 7.6 123 29-163 1-139 (185)
51 PRK08293 3-hydroxybutyryl-CoA 98.6 3.4E-07 7.5E-12 84.3 11.2 119 28-173 3-141 (287)
52 TIGR02437 FadB fatty oxidation 98.5 3.9E-07 8.4E-12 93.9 9.9 119 27-173 312-449 (714)
53 PRK11730 fadB multifunctional 98.5 5E-07 1.1E-11 93.2 10.7 119 27-173 312-449 (715)
54 TIGR02441 fa_ox_alpha_mit fatt 98.5 5.8E-07 1.3E-11 92.9 11.1 119 27-173 334-471 (737)
55 PRK11154 fadJ multifunctional 98.5 7E-07 1.5E-11 92.1 10.8 119 27-173 308-446 (708)
56 KOG2304 3-hydroxyacyl-CoA dehy 98.5 1.3E-07 2.9E-12 82.9 4.3 124 24-174 7-154 (298)
57 TIGR02440 FadJ fatty oxidation 98.5 1E-06 2.2E-11 90.7 11.5 119 27-173 303-441 (699)
58 PLN02353 probable UDP-glucose 98.5 2.3E-06 4.9E-11 84.2 12.9 120 28-152 1-135 (473)
59 PRK05808 3-hydroxybutyryl-CoA 98.4 2.9E-06 6.4E-11 77.9 12.5 118 28-173 3-139 (282)
60 PF01210 NAD_Gly3P_dh_N: NAD-d 98.4 4.4E-07 9.6E-12 76.3 6.1 94 30-145 1-103 (157)
61 PLN02166 dTDP-glucose 4,6-dehy 98.4 4.8E-06 1E-10 81.3 13.0 173 26-204 118-297 (436)
62 PRK06035 3-hydroxyacyl-CoA deh 98.4 5.8E-06 1.3E-10 76.3 12.6 118 29-174 4-143 (291)
63 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.3 4.2E-06 9.1E-11 83.0 12.0 124 27-177 4-145 (503)
64 PF01073 3Beta_HSD: 3-beta hyd 98.3 2.6E-06 5.5E-11 78.4 9.6 116 32-149 1-118 (280)
65 PRK07530 3-hydroxybutyryl-CoA 98.3 2.7E-06 5.8E-11 78.5 9.0 119 28-174 4-141 (292)
66 TIGR01915 npdG NADPH-dependent 98.3 4.6E-06 9.9E-11 73.9 9.8 101 29-149 1-105 (219)
67 PRK08268 3-hydroxy-acyl-CoA de 98.3 6.6E-06 1.4E-10 81.8 11.1 121 29-177 8-147 (507)
68 PRK06129 3-hydroxyacyl-CoA deh 98.2 1.4E-05 2.9E-10 74.5 12.3 120 28-173 2-139 (308)
69 PRK09260 3-hydroxybutyryl-CoA 98.2 4.5E-06 9.7E-11 76.9 8.8 99 29-149 2-119 (288)
70 PRK07531 bifunctional 3-hydrox 98.2 8.7E-06 1.9E-10 80.7 11.2 101 29-150 5-119 (495)
71 PRK15181 Vi polysaccharide bio 98.2 9.5E-06 2.1E-10 76.5 10.8 169 26-204 13-199 (348)
72 PRK06130 3-hydroxybutyryl-CoA 98.2 1.5E-05 3.2E-10 74.2 11.8 119 28-173 4-136 (311)
73 PLN02427 UDP-apiose/xylose syn 98.2 1.1E-05 2.5E-10 77.0 11.1 117 24-146 10-136 (386)
74 COG0240 GpsA Glycerol-3-phosph 98.2 2.3E-05 5.1E-10 73.0 12.6 94 28-145 1-105 (329)
75 PLN02545 3-hydroxybutyryl-CoA 98.2 5.7E-06 1.2E-10 76.4 8.4 118 28-173 4-140 (295)
76 KOG1502 Flavonol reductase/cin 98.2 2E-05 4.3E-10 73.4 11.6 118 27-149 5-131 (327)
77 PLN02572 UDP-sulfoquinovose sy 98.2 1.3E-05 2.9E-10 78.3 10.6 181 21-204 40-262 (442)
78 PF03807 F420_oxidored: NADP o 98.1 5.7E-06 1.2E-10 63.2 5.9 94 30-147 1-96 (96)
79 PLN02206 UDP-glucuronate decar 98.1 2.8E-05 6.1E-10 76.0 12.1 113 27-145 118-232 (442)
80 TIGR03026 NDP-sugDHase nucleot 98.1 4.4E-05 9.5E-10 74.0 12.9 118 29-160 1-136 (411)
81 PLN00198 anthocyanidin reducta 98.1 5.1E-05 1.1E-09 71.0 12.7 176 27-204 8-202 (338)
82 CHL00194 ycf39 Ycf39; Provisio 98.1 2.6E-05 5.6E-10 72.6 10.1 105 29-145 1-109 (317)
83 TIGR01181 dTDP_gluc_dehyt dTDP 98.0 6.5E-05 1.4E-09 68.8 12.3 167 30-204 1-184 (317)
84 PF03446 NAD_binding_2: NAD bi 98.0 1.4E-05 3E-10 67.6 7.1 90 28-144 1-93 (163)
85 PRK00094 gpsA NAD(P)H-dependen 98.0 3.5E-05 7.6E-10 71.7 10.4 100 28-149 1-109 (325)
86 PRK10217 dTDP-glucose 4,6-dehy 98.0 7.2E-05 1.6E-09 70.3 12.5 171 28-204 1-194 (355)
87 COG2085 Predicted dinucleotide 98.0 4.8E-05 1E-09 66.6 10.1 97 28-149 1-97 (211)
88 PRK15057 UDP-glucose 6-dehydro 98.0 4.1E-05 9E-10 73.6 10.7 110 29-150 1-123 (388)
89 TIGR03466 HpnA hopanoid-associ 98.0 4.2E-05 9E-10 70.6 10.0 111 29-145 1-112 (328)
90 PLN02662 cinnamyl-alcohol dehy 98.0 9E-05 2E-09 68.5 12.1 105 29-135 5-116 (322)
91 PRK11908 NAD-dependent epimera 98.0 5E-05 1.1E-09 71.4 10.4 110 28-146 1-118 (347)
92 PF02719 Polysacc_synt_2: Poly 98.0 5.4E-06 1.2E-10 76.3 3.6 119 31-150 1-137 (293)
93 PLN02650 dihydroflavonol-4-red 97.9 0.00013 2.7E-09 68.8 12.6 116 28-145 5-127 (351)
94 PRK10084 dTDP-glucose 4,6 dehy 97.9 0.00011 2.4E-09 69.0 12.2 170 29-204 1-201 (352)
95 COG1086 Predicted nucleoside-d 97.9 7.6E-05 1.6E-09 73.7 10.9 210 29-268 251-493 (588)
96 PLN02214 cinnamoyl-CoA reducta 97.9 0.00013 2.8E-09 68.8 12.3 111 27-145 9-126 (342)
97 TIGR02622 CDP_4_6_dhtase CDP-g 97.9 0.00011 2.4E-09 69.1 11.7 172 28-204 4-193 (349)
98 PLN02695 GDP-D-mannose-3',5'-e 97.9 4.6E-05 9.9E-10 72.7 9.0 169 27-204 20-201 (370)
99 PTZ00345 glycerol-3-phosphate 97.9 8.6E-05 1.9E-09 70.8 10.7 80 21-104 4-101 (365)
100 PRK08125 bifunctional UDP-gluc 97.9 0.0001 2.3E-09 75.6 12.0 169 26-204 313-497 (660)
101 COG0451 WcaG Nucleoside-diphos 97.9 6.9E-05 1.5E-09 68.6 9.7 165 29-204 1-176 (314)
102 PRK14619 NAD(P)H-dependent gly 97.9 7.4E-05 1.6E-09 69.6 9.9 79 27-146 3-83 (308)
103 PRK14620 NAD(P)H-dependent gly 97.9 8.9E-05 1.9E-09 69.4 10.0 99 29-149 1-110 (326)
104 PRK11064 wecC UDP-N-acetyl-D-m 97.9 0.00017 3.7E-09 70.0 11.9 106 28-151 3-126 (415)
105 PRK15182 Vi polysaccharide bio 97.8 0.00028 6.1E-09 68.7 13.3 109 27-151 5-127 (425)
106 PRK12439 NAD(P)H-dependent gly 97.8 0.0001 2.3E-09 69.6 10.1 99 26-149 5-115 (341)
107 PRK12921 2-dehydropantoate 2-r 97.8 0.00026 5.6E-09 65.3 12.5 115 29-172 1-122 (305)
108 PRK08229 2-dehydropantoate 2-r 97.8 0.00017 3.6E-09 67.9 11.1 100 28-150 2-112 (341)
109 PF13460 NAD_binding_10: NADH( 97.8 0.00021 4.6E-09 60.6 10.8 93 31-145 1-97 (183)
110 TIGR03589 PseB UDP-N-acetylglu 97.8 0.00017 3.8E-09 67.4 11.2 113 28-145 4-124 (324)
111 PRK14618 NAD(P)H-dependent gly 97.8 0.00011 2.4E-09 68.9 9.7 72 27-104 3-82 (328)
112 PRK06522 2-dehydropantoate 2-r 97.8 0.00035 7.6E-09 64.3 12.8 100 29-150 1-105 (304)
113 TIGR01777 yfcH conserved hypot 97.8 0.00014 3.1E-09 65.9 9.8 99 31-138 1-103 (292)
114 COG1087 GalE UDP-glucose 4-epi 97.8 0.00016 3.5E-09 66.4 9.8 164 29-204 1-176 (329)
115 PLN02896 cinnamyl-alcohol dehy 97.8 0.00036 7.7E-09 65.8 12.2 173 27-204 9-210 (353)
116 PLN02778 3,5-epimerase/4-reduc 97.8 0.00036 7.9E-09 64.6 11.9 92 27-138 8-104 (298)
117 KOG1429 dTDP-glucose 4-6-dehyd 97.7 0.00012 2.6E-09 66.7 8.0 112 25-144 24-139 (350)
118 PRK09987 dTDP-4-dehydrorhamnos 97.7 9.9E-05 2.1E-09 68.2 7.5 99 29-145 1-103 (299)
119 PLN02989 cinnamyl-alcohol dehy 97.7 0.00067 1.4E-08 63.0 13.1 171 28-204 5-198 (325)
120 TIGR03376 glycerol3P_DH glycer 97.7 0.00023 5.1E-09 67.3 9.6 71 30-104 1-90 (342)
121 PLN03209 translocon at the inn 97.7 0.00049 1.1E-08 69.0 12.2 116 27-145 79-207 (576)
122 PF01118 Semialdhyde_dh: Semia 97.7 0.00012 2.5E-09 58.8 6.3 111 30-176 1-113 (121)
123 PRK10675 UDP-galactose-4-epime 97.7 0.00032 6.9E-09 65.4 10.2 113 29-145 1-123 (338)
124 PLN02986 cinnamyl-alcohol dehy 97.7 0.00093 2E-08 62.0 13.2 105 29-135 6-117 (322)
125 TIGR01472 gmd GDP-mannose 4,6- 97.6 0.00032 6.9E-09 65.8 9.7 156 29-193 1-178 (343)
126 PLN02583 cinnamoyl-CoA reducta 97.6 0.00087 1.9E-08 61.8 12.5 112 29-144 7-126 (297)
127 TIGR01214 rmlD dTDP-4-dehydror 97.6 0.00023 4.9E-09 64.7 8.0 95 30-145 1-99 (287)
128 PLN02260 probable rhamnose bio 97.6 0.001 2.2E-08 68.3 13.5 177 27-204 5-193 (668)
129 COG1748 LYS9 Saccharopine dehy 97.6 0.00092 2E-08 64.0 12.0 149 28-205 1-159 (389)
130 PRK06249 2-dehydropantoate 2-r 97.6 0.00095 2.1E-08 62.2 11.9 118 27-173 4-127 (313)
131 PRK06194 hypothetical protein; 97.5 0.0029 6.3E-08 57.5 14.4 159 28-202 6-192 (287)
132 PRK07201 short chain dehydroge 97.5 0.00074 1.6E-08 68.8 11.5 108 29-140 1-120 (657)
133 PLN02653 GDP-mannose 4,6-dehyd 97.5 0.00045 9.8E-09 64.7 9.2 109 27-137 5-126 (340)
134 PLN02657 3,8-divinyl protochlo 97.5 0.00098 2.1E-08 64.1 11.5 119 21-145 53-181 (390)
135 TIGR00872 gnd_rel 6-phosphoglu 97.5 0.00087 1.9E-08 62.1 10.3 95 29-148 1-96 (298)
136 PRK12480 D-lactate dehydrogena 97.5 0.00064 1.4E-08 64.0 9.2 101 17-146 135-235 (330)
137 PRK11150 rfaD ADP-L-glycero-D- 97.5 0.00064 1.4E-08 62.6 9.0 108 31-145 2-115 (308)
138 PLN02688 pyrroline-5-carboxyla 97.4 0.00078 1.7E-08 61.1 9.4 95 29-149 1-99 (266)
139 PRK11880 pyrroline-5-carboxyla 97.4 0.00082 1.8E-08 61.0 9.4 96 28-149 2-98 (267)
140 PRK07680 late competence prote 97.4 0.001 2.2E-08 60.7 9.7 97 29-149 1-100 (273)
141 PRK06928 pyrroline-5-carboxyla 97.4 0.0027 5.8E-08 58.3 12.4 99 28-149 1-102 (277)
142 PLN00141 Tic62-NAD(P)-related 97.3 0.0018 3.9E-08 58.1 10.3 113 23-144 12-130 (251)
143 PF01370 Epimerase: NAD depend 97.3 0.00021 4.6E-09 62.6 4.2 163 31-204 1-174 (236)
144 PLN02240 UDP-glucose 4-epimera 97.3 0.001 2.2E-08 62.4 8.8 115 28-145 5-131 (352)
145 COG2084 MmsB 3-hydroxyisobutyr 97.3 0.0017 3.8E-08 59.7 10.0 66 29-105 1-66 (286)
146 TIGR02197 heptose_epim ADP-L-g 97.3 0.0013 2.8E-08 60.4 9.2 109 31-145 1-113 (314)
147 PF10727 Rossmann-like: Rossma 97.3 0.00055 1.2E-08 55.6 5.9 102 26-153 8-114 (127)
148 KOG1430 C-3 sterol dehydrogena 97.3 0.002 4.4E-08 61.1 10.5 110 27-138 3-119 (361)
149 PRK12320 hypothetical protein; 97.3 0.0016 3.5E-08 67.0 10.4 101 29-145 1-101 (699)
150 PRK08269 3-hydroxybutyryl-CoA 97.3 0.0016 3.5E-08 60.9 9.6 111 40-174 1-137 (314)
151 PRK05865 hypothetical protein; 97.3 0.00087 1.9E-08 70.3 8.4 104 29-148 1-105 (854)
152 PRK08655 prephenate dehydrogen 97.3 0.00078 1.7E-08 65.9 7.6 67 29-105 1-67 (437)
153 PRK11559 garR tartronate semia 97.3 0.0012 2.6E-08 60.9 8.5 65 28-104 2-66 (296)
154 PRK07417 arogenate dehydrogena 97.3 0.002 4.3E-08 59.2 9.8 65 29-104 1-65 (279)
155 PRK11199 tyrA bifunctional cho 97.2 0.0015 3.3E-08 62.6 9.2 54 27-104 97-150 (374)
156 PTZ00142 6-phosphogluconate de 97.2 0.0015 3.2E-08 64.5 9.0 97 28-147 1-103 (470)
157 PRK15461 NADH-dependent gamma- 97.2 0.001 2.2E-08 61.7 7.4 65 28-104 1-65 (296)
158 PRK06545 prephenate dehydrogen 97.2 0.0021 4.6E-08 61.2 9.8 68 29-104 1-68 (359)
159 PRK07634 pyrroline-5-carboxyla 97.2 0.0034 7.4E-08 56.1 10.5 99 27-149 3-103 (245)
160 PLN02686 cinnamoyl-CoA reducta 97.2 0.0012 2.7E-08 62.8 7.9 108 26-135 51-169 (367)
161 PRK12367 short chain dehydroge 97.2 0.004 8.8E-08 55.9 10.7 112 19-134 5-124 (245)
162 PLN02253 xanthoxin dehydrogena 97.2 0.0071 1.5E-07 54.8 12.4 158 27-202 17-199 (280)
163 PRK07502 cyclohexadienyl dehyd 97.2 0.0028 6E-08 58.9 9.8 70 28-105 6-75 (307)
164 TIGR01505 tartro_sem_red 2-hyd 97.2 0.0014 3E-08 60.4 7.7 64 30-105 1-64 (291)
165 COG0136 Asd Aspartate-semialde 97.2 0.0024 5.2E-08 59.8 9.1 73 28-105 1-75 (334)
166 COG0677 WecC UDP-N-acetyl-D-ma 97.1 0.005 1.1E-07 58.7 11.3 110 28-150 9-134 (436)
167 PRK12491 pyrroline-5-carboxyla 97.1 0.0016 3.5E-08 59.7 8.0 67 29-104 3-71 (272)
168 PRK07679 pyrroline-5-carboxyla 97.1 0.0037 8.1E-08 57.3 10.4 98 28-149 3-103 (279)
169 PRK15469 ghrA bifunctional gly 97.1 0.0042 9.2E-08 58.1 10.6 93 26-145 134-226 (312)
170 PRK12490 6-phosphogluconate de 97.1 0.0037 7.9E-08 58.0 9.9 91 29-146 1-95 (299)
171 TIGR02354 thiF_fam2 thiamine b 97.1 0.0046 9.9E-08 54.1 9.7 35 27-63 20-54 (200)
172 PRK08605 D-lactate dehydrogena 97.1 0.0022 4.8E-08 60.5 8.3 68 23-105 141-209 (332)
173 PRK13243 glyoxylate reductase; 97.1 0.0026 5.7E-08 60.0 8.7 98 25-149 147-246 (333)
174 PF02558 ApbA: Ketopantoate re 97.1 0.0042 9.1E-08 51.2 9.0 116 31-173 1-122 (151)
175 PTZ00431 pyrroline carboxylate 97.1 0.0033 7.1E-08 57.1 9.0 90 28-149 3-94 (260)
176 PRK13394 3-hydroxybutyrate deh 97.0 0.0052 1.1E-07 54.8 10.1 114 28-145 7-143 (262)
177 PF02826 2-Hacid_dh_C: D-isome 97.0 0.0014 3.1E-08 56.1 6.1 108 13-146 19-128 (178)
178 PRK08267 short chain dehydroge 97.0 0.0022 4.7E-08 57.5 7.6 35 28-64 1-35 (260)
179 COG0345 ProC Pyrroline-5-carbo 97.0 0.0049 1.1E-07 56.3 9.8 97 28-149 1-99 (266)
180 PRK05708 2-dehydropantoate 2-r 97.0 0.013 2.7E-07 54.6 12.9 117 28-173 2-125 (305)
181 PRK06598 aspartate-semialdehyd 97.0 0.0036 7.9E-08 59.7 9.4 72 28-105 1-74 (369)
182 COG2910 Putative NADH-flavin r 97.0 0.004 8.7E-08 53.5 8.6 104 29-145 1-104 (211)
183 TIGR01746 Thioester-redct thio 97.0 0.005 1.1E-07 57.3 10.2 109 30-139 1-130 (367)
184 PRK09599 6-phosphogluconate de 97.0 0.0048 1E-07 57.2 9.9 64 29-104 1-67 (301)
185 PLN02968 Probable N-acetyl-gam 97.0 0.0014 3E-08 63.0 6.3 77 26-105 36-113 (381)
186 TIGR01179 galE UDP-glucose-4-e 97.0 0.011 2.5E-07 54.1 12.1 107 30-141 1-117 (328)
187 PRK14982 acyl-ACP reductase; P 97.0 0.0033 7.1E-08 59.4 8.4 97 27-149 154-250 (340)
188 PRK08643 acetoin reductase; Va 97.0 0.029 6.3E-07 49.9 14.1 115 29-147 3-140 (256)
189 PF01488 Shikimate_DH: Shikima 96.9 0.0021 4.5E-08 52.6 6.1 76 27-107 11-86 (135)
190 PF01113 DapB_N: Dihydrodipico 96.9 0.004 8.7E-08 50.2 7.6 72 29-103 1-74 (124)
191 PRK05717 oxidoreductase; Valid 96.9 0.0081 1.8E-07 53.6 10.4 145 29-190 11-176 (255)
192 KOG0409 Predicted dehydrogenas 96.9 0.0038 8.3E-08 57.4 8.2 102 27-142 34-152 (327)
193 COG1712 Predicted dinucleotide 96.9 0.0062 1.3E-07 53.9 9.1 96 29-149 1-97 (255)
194 PRK12384 sorbitol-6-phosphate 96.9 0.026 5.6E-07 50.3 13.5 117 30-148 4-143 (259)
195 PRK06924 short chain dehydroge 96.9 0.0073 1.6E-07 53.6 9.9 35 28-64 1-35 (251)
196 TIGR01745 asd_gamma aspartate- 96.9 0.0052 1.1E-07 58.5 9.2 72 29-106 1-74 (366)
197 PRK07231 fabG 3-ketoacyl-(acyl 96.9 0.013 2.8E-07 51.8 11.4 35 28-64 5-39 (251)
198 PRK15059 tartronate semialdehy 96.9 0.0031 6.7E-08 58.4 7.6 64 29-105 1-64 (292)
199 PRK12429 3-hydroxybutyrate deh 96.9 0.0098 2.1E-07 52.8 10.6 113 29-146 5-140 (258)
200 TIGR01832 kduD 2-deoxy-D-gluco 96.9 0.015 3.2E-07 51.5 11.7 116 27-146 4-140 (248)
201 PLN02256 arogenate dehydrogena 96.9 0.0063 1.4E-07 56.7 9.6 65 27-104 35-100 (304)
202 PRK07574 formate dehydrogenase 96.9 0.0063 1.4E-07 58.5 9.8 99 26-149 190-290 (385)
203 TIGR03206 benzo_BadH 2-hydroxy 96.9 0.013 2.7E-07 51.8 11.1 35 28-64 3-37 (250)
204 PRK06182 short chain dehydroge 96.9 0.0047 1E-07 55.8 8.5 113 28-146 3-133 (273)
205 PRK07806 short chain dehydroge 96.9 0.019 4.2E-07 50.8 12.2 115 28-146 6-135 (248)
206 PRK10538 malonic semialdehyde 96.9 0.019 4.2E-07 51.0 12.2 34 29-64 1-34 (248)
207 PRK07069 short chain dehydroge 96.9 0.037 8E-07 48.9 14.0 114 30-146 1-138 (251)
208 PF04321 RmlD_sub_bind: RmlD s 96.9 0.00088 1.9E-08 61.7 3.6 98 29-145 1-100 (286)
209 PLN02725 GDP-4-keto-6-deoxyman 96.9 0.0024 5.2E-08 58.4 6.4 88 33-138 2-94 (306)
210 PRK08213 gluconate 5-dehydroge 96.9 0.013 2.7E-07 52.4 10.9 115 28-146 12-149 (259)
211 PRK08507 prephenate dehydrogen 96.9 0.0069 1.5E-07 55.3 9.4 66 29-104 1-66 (275)
212 PRK12549 shikimate 5-dehydroge 96.8 0.0042 9.1E-08 57.3 7.9 72 28-104 127-200 (284)
213 PRK07102 short chain dehydroge 96.8 0.016 3.4E-07 51.3 11.3 116 28-146 1-135 (243)
214 PRK06180 short chain dehydroge 96.8 0.018 4E-07 52.2 11.8 113 28-146 4-137 (277)
215 PRK12829 short chain dehydroge 96.8 0.019 4.1E-07 51.1 11.6 36 27-64 10-45 (264)
216 PRK13304 L-aspartate dehydroge 96.8 0.0071 1.5E-07 55.2 8.9 69 28-105 1-70 (265)
217 PLN02996 fatty acyl-CoA reduct 96.8 0.016 3.4E-07 57.6 12.0 107 28-135 11-150 (491)
218 PRK07814 short chain dehydroge 96.8 0.013 2.8E-07 52.7 10.3 116 27-146 9-147 (263)
219 PRK08278 short chain dehydroge 96.8 0.029 6.3E-07 50.8 12.7 156 29-201 7-192 (273)
220 PRK12828 short chain dehydroge 96.8 0.0074 1.6E-07 52.7 8.5 35 28-64 7-41 (239)
221 COG1090 Predicted nucleoside-d 96.7 0.011 2.3E-07 54.0 9.4 98 31-139 1-103 (297)
222 PRK07774 short chain dehydroge 96.7 0.047 1E-06 48.3 13.6 35 28-64 6-40 (250)
223 COG0569 TrkA K+ transport syst 96.7 0.0039 8.5E-08 55.5 6.5 72 29-105 1-75 (225)
224 PRK07067 sorbitol dehydrogenas 96.7 0.023 5E-07 50.6 11.7 111 29-146 7-140 (257)
225 PRK07424 bifunctional sterol d 96.7 0.016 3.4E-07 56.2 11.1 105 28-135 178-291 (406)
226 PLN02260 probable rhamnose bio 96.7 0.011 2.4E-07 60.7 10.7 90 26-137 378-474 (668)
227 PRK06482 short chain dehydroge 96.7 0.082 1.8E-06 47.7 15.3 111 29-145 3-134 (276)
228 PLN02350 phosphogluconate dehy 96.7 0.0044 9.6E-08 61.4 7.4 96 27-146 5-108 (493)
229 PRK07326 short chain dehydroge 96.7 0.018 4E-07 50.4 10.7 114 29-147 7-141 (237)
230 PLN02712 arogenate dehydrogena 96.7 0.011 2.3E-07 61.0 10.2 66 26-104 50-116 (667)
231 COG0111 SerA Phosphoglycerate 96.7 0.0061 1.3E-07 57.3 7.9 107 13-145 126-233 (324)
232 PRK12936 3-ketoacyl-(acyl-carr 96.7 0.041 8.9E-07 48.3 12.9 35 28-64 6-40 (245)
233 PRK07856 short chain dehydroge 96.7 0.016 3.5E-07 51.6 10.3 35 28-64 6-40 (252)
234 PF05368 NmrA: NmrA-like famil 96.7 0.0047 1E-07 54.5 6.8 95 31-138 1-96 (233)
235 PRK07523 gluconate 5-dehydroge 96.7 0.029 6.3E-07 49.9 11.9 116 28-147 10-147 (255)
236 PLN03139 formate dehydrogenase 96.7 0.014 2.9E-07 56.3 10.2 100 25-149 196-297 (386)
237 COG0300 DltE Short-chain dehyd 96.7 0.027 5.7E-07 51.4 11.6 116 26-145 4-142 (265)
238 PRK05479 ketol-acid reductoiso 96.7 0.012 2.6E-07 55.4 9.6 69 24-104 13-81 (330)
239 PRK08945 putative oxoacyl-(acy 96.6 0.026 5.6E-07 50.0 11.3 37 26-64 10-46 (247)
240 TIGR01327 PGDH D-3-phosphoglyc 96.6 0.0075 1.6E-07 60.4 8.5 104 16-145 125-229 (525)
241 COG1893 ApbA Ketopantoate redu 96.6 0.012 2.6E-07 54.9 9.3 119 29-175 1-125 (307)
242 PRK05875 short chain dehydroge 96.6 0.041 8.8E-07 49.6 12.6 35 28-64 7-41 (276)
243 PRK06476 pyrroline-5-carboxyla 96.6 0.0084 1.8E-07 54.2 8.1 69 29-105 1-70 (258)
244 PRK07831 short chain dehydroge 96.6 0.14 3.1E-06 45.7 16.1 37 26-64 15-52 (262)
245 PLN00016 RNA-binding protein; 96.6 0.018 3.9E-07 55.0 10.6 36 27-64 51-90 (378)
246 TIGR00873 gnd 6-phosphoglucona 96.6 0.0057 1.2E-07 60.3 7.3 100 30-149 1-104 (467)
247 COG0287 TyrA Prephenate dehydr 96.6 0.015 3.3E-07 53.5 9.7 65 28-104 3-72 (279)
248 PRK08818 prephenate dehydrogen 96.6 0.011 2.5E-07 56.4 9.1 56 28-104 4-59 (370)
249 PRK12939 short chain dehydroge 96.6 0.029 6.3E-07 49.5 11.2 115 28-146 7-143 (250)
250 PRK06398 aldose dehydrogenase; 96.6 0.024 5.2E-07 50.9 10.7 151 28-201 6-171 (258)
251 PRK08340 glucose-1-dehydrogena 96.6 0.045 9.8E-07 48.9 12.4 34 29-64 1-34 (259)
252 PRK14874 aspartate-semialdehyd 96.6 0.0065 1.4E-07 57.3 7.1 72 28-106 1-73 (334)
253 PLN02928 oxidoreductase family 96.6 0.0087 1.9E-07 56.8 8.0 105 25-145 156-262 (347)
254 PRK05993 short chain dehydroge 96.6 0.0079 1.7E-07 54.6 7.5 111 29-146 5-135 (277)
255 PRK06101 short chain dehydroge 96.5 0.031 6.8E-07 49.4 11.1 115 28-146 1-128 (240)
256 cd01487 E1_ThiF_like E1_ThiF_l 96.5 0.028 6.1E-07 48.0 10.2 33 30-64 1-33 (174)
257 PRK06728 aspartate-semialdehyd 96.5 0.0051 1.1E-07 58.3 6.1 71 28-105 5-77 (347)
258 PRK08219 short chain dehydroge 96.5 0.013 2.7E-07 51.0 8.2 73 28-107 3-82 (227)
259 TIGR01724 hmd_rel H2-forming N 96.5 0.04 8.7E-07 51.5 11.7 66 29-104 1-89 (341)
260 PRK08644 thiamine biosynthesis 96.5 0.02 4.3E-07 50.6 9.4 35 27-63 27-61 (212)
261 TIGR01850 argC N-acetyl-gamma- 96.5 0.0067 1.4E-07 57.6 6.6 74 29-105 1-77 (346)
262 PRK05671 aspartate-semialdehyd 96.5 0.0066 1.4E-07 57.4 6.5 72 27-105 3-75 (336)
263 PRK12937 short chain dehydroge 96.5 0.035 7.7E-07 48.8 10.8 114 28-145 5-139 (245)
264 PRK13581 D-3-phosphoglycerate 96.4 0.013 2.8E-07 58.7 8.7 108 15-149 126-236 (526)
265 PRK06179 short chain dehydroge 96.4 0.011 2.4E-07 53.1 7.7 34 29-64 5-38 (270)
266 PRK07832 short chain dehydroge 96.4 0.13 2.8E-06 46.4 14.6 34 29-64 1-34 (272)
267 PRK07023 short chain dehydroge 96.4 0.017 3.7E-07 51.0 8.7 35 28-64 1-35 (243)
268 PRK09291 short chain dehydroge 96.4 0.043 9.4E-07 48.7 11.3 75 29-107 3-84 (257)
269 cd01065 NAD_bind_Shikimate_DH 96.4 0.013 2.7E-07 48.4 7.2 73 27-107 18-92 (155)
270 cd05213 NAD_bind_Glutamyl_tRNA 96.4 0.019 4.1E-07 53.6 9.2 100 27-149 177-277 (311)
271 COG1091 RfbD dTDP-4-dehydrorha 96.4 0.011 2.5E-07 54.2 7.4 94 29-144 1-98 (281)
272 PRK06181 short chain dehydroge 96.4 0.048 1E-06 48.7 11.5 115 29-147 2-138 (263)
273 PRK07890 short chain dehydroge 96.4 0.042 9.1E-07 48.8 11.0 35 28-64 5-39 (258)
274 PLN02712 arogenate dehydrogena 96.4 0.018 4E-07 59.2 9.6 66 26-104 367-433 (667)
275 PLN02383 aspartate semialdehyd 96.4 0.0082 1.8E-07 56.9 6.5 74 26-106 5-79 (344)
276 TIGR02356 adenyl_thiF thiazole 96.4 0.011 2.4E-07 51.7 6.9 35 27-63 20-54 (202)
277 TIGR03649 ergot_EASG ergot alk 96.4 0.015 3.3E-07 52.8 8.1 33 30-64 1-33 (285)
278 PRK06914 short chain dehydroge 96.4 0.035 7.5E-07 50.2 10.4 34 29-64 4-37 (280)
279 TIGR03325 BphB_TodD cis-2,3-di 96.3 0.031 6.8E-07 50.1 10.0 35 28-64 5-39 (262)
280 PRK06197 short chain dehydroge 96.3 0.045 9.8E-07 50.4 11.1 116 28-146 16-152 (306)
281 PRK12475 thiamine/molybdopteri 96.3 0.014 3E-07 55.2 7.7 76 27-104 23-124 (338)
282 PRK08251 short chain dehydroge 96.3 0.064 1.4E-06 47.4 11.7 78 29-108 3-93 (248)
283 PRK08263 short chain dehydroge 96.3 0.044 9.5E-07 49.5 10.8 34 29-64 4-37 (275)
284 PRK12827 short chain dehydroge 96.3 0.046 1E-06 48.0 10.7 102 28-133 6-130 (249)
285 PRK09135 pteridine reductase; 96.3 0.026 5.6E-07 49.7 9.0 33 29-63 7-39 (249)
286 COG1088 RfbB dTDP-D-glucose 4, 96.3 0.04 8.7E-07 50.9 10.2 116 29-144 1-124 (340)
287 PRK08040 putative semialdehyde 96.3 0.0085 1.8E-07 56.6 6.1 72 27-105 3-75 (336)
288 PRK05650 short chain dehydroge 96.3 0.077 1.7E-06 47.7 12.2 34 29-64 1-34 (270)
289 PRK00048 dihydrodipicolinate r 96.3 0.029 6.3E-07 50.9 9.3 68 28-104 1-68 (257)
290 PRK12481 2-deoxy-D-gluconate 3 96.3 0.098 2.1E-06 46.7 12.7 115 28-146 8-143 (251)
291 TIGR01963 PHB_DH 3-hydroxybuty 96.3 0.053 1.1E-06 47.9 10.9 34 29-64 2-35 (255)
292 PRK03659 glutathione-regulated 96.2 0.027 5.8E-07 57.4 9.9 138 28-197 400-542 (601)
293 PRK14806 bifunctional cyclohex 96.2 0.03 6.6E-07 58.2 10.6 93 29-145 4-97 (735)
294 PRK12826 3-ketoacyl-(acyl-carr 96.2 0.041 8.9E-07 48.4 10.1 35 28-64 6-40 (251)
295 PRK05876 short chain dehydroge 96.2 0.027 5.8E-07 51.3 9.1 115 28-146 6-143 (275)
296 PF00899 ThiF: ThiF family; I 96.2 0.012 2.6E-07 47.8 6.1 34 29-64 3-36 (135)
297 PRK08993 2-deoxy-D-gluconate 3 96.2 0.069 1.5E-06 47.6 11.6 114 29-146 11-145 (253)
298 PRK06901 aspartate-semialdehyd 96.2 0.0064 1.4E-07 56.8 4.9 69 28-105 3-73 (322)
299 PRK12823 benD 1,6-dihydroxycyc 96.2 0.25 5.5E-06 43.9 15.2 35 28-64 8-42 (260)
300 PRK06198 short chain dehydroge 96.2 0.092 2E-06 46.7 12.3 36 27-64 5-41 (260)
301 PRK05693 short chain dehydroge 96.2 0.017 3.7E-07 52.1 7.6 35 28-64 1-35 (274)
302 PRK05653 fabG 3-ketoacyl-(acyl 96.2 0.037 8.1E-07 48.4 9.6 35 28-64 5-39 (246)
303 PRK06138 short chain dehydroge 96.2 0.047 1E-06 48.2 10.3 35 28-64 5-39 (252)
304 KOG2305 3-hydroxyacyl-CoA dehy 96.2 0.008 1.7E-07 53.3 5.1 103 29-150 4-123 (313)
305 PRK05866 short chain dehydroge 96.2 0.058 1.2E-06 49.6 11.1 34 29-64 41-74 (293)
306 PRK12742 oxidoreductase; Provi 96.2 0.082 1.8E-06 46.3 11.6 33 28-62 6-38 (237)
307 PRK05565 fabG 3-ketoacyl-(acyl 96.2 0.052 1.1E-06 47.6 10.4 35 28-64 5-40 (247)
308 COG0002 ArgC Acetylglutamate s 96.2 0.012 2.7E-07 55.2 6.5 74 27-103 1-77 (349)
309 PRK07060 short chain dehydroge 96.2 0.035 7.6E-07 48.8 9.2 115 28-146 9-137 (245)
310 TIGR02415 23BDH acetoin reduct 96.2 0.035 7.6E-07 49.2 9.2 112 30-145 2-136 (254)
311 PRK06128 oxidoreductase; Provi 96.1 0.07 1.5E-06 49.0 11.4 115 28-146 55-192 (300)
312 PRK06057 short chain dehydroge 96.1 0.018 4E-07 51.3 7.3 37 27-65 6-42 (255)
313 PRK07024 short chain dehydroge 96.1 0.16 3.4E-06 45.3 13.4 35 28-64 2-36 (257)
314 PRK06841 short chain dehydroge 96.1 0.018 3.8E-07 51.2 7.2 35 28-64 15-49 (255)
315 PRK08085 gluconate 5-dehydroge 96.1 0.046 9.9E-07 48.6 9.9 35 28-64 9-43 (254)
316 COG1052 LdhA Lactate dehydroge 96.1 0.028 6.2E-07 52.8 8.7 95 24-145 142-236 (324)
317 TIGR00465 ilvC ketol-acid redu 96.1 0.04 8.6E-07 51.6 9.7 65 28-104 3-67 (314)
318 PRK06953 short chain dehydroge 96.1 0.039 8.5E-07 48.1 9.1 114 28-146 1-130 (222)
319 PRK06196 oxidoreductase; Provi 96.1 0.043 9.4E-07 50.8 9.8 113 28-146 26-156 (315)
320 PRK12825 fabG 3-ketoacyl-(acyl 96.1 0.067 1.5E-06 46.8 10.6 34 27-62 5-38 (249)
321 PRK07454 short chain dehydroge 96.1 0.082 1.8E-06 46.5 11.2 36 27-64 5-40 (241)
322 KOG2666 UDP-glucose/GDP-mannos 96.1 0.017 3.8E-07 53.6 6.8 75 28-109 1-91 (481)
323 PRK07666 fabG 3-ketoacyl-(acyl 96.1 0.034 7.4E-07 48.9 8.6 35 28-64 7-41 (239)
324 COG4221 Short-chain alcohol de 96.1 0.31 6.6E-06 43.9 14.5 154 29-201 7-181 (246)
325 PRK07576 short chain dehydroge 96.1 0.16 3.5E-06 45.6 13.2 35 28-64 9-43 (264)
326 PLN02503 fatty acyl-CoA reduct 96.1 0.054 1.2E-06 55.1 11.0 109 27-136 118-258 (605)
327 PRK08642 fabG 3-ketoacyl-(acyl 96.1 0.081 1.8E-06 46.7 11.1 32 29-62 6-37 (253)
328 PRK09009 C factor cell-cell si 96.1 0.044 9.5E-07 48.1 9.3 72 29-108 1-79 (235)
329 PF03949 Malic_M: Malic enzyme 96.1 0.017 3.7E-07 52.3 6.6 101 29-149 26-145 (255)
330 PRK08277 D-mannonate oxidoredu 96.0 0.22 4.7E-06 44.9 14.0 35 28-64 10-44 (278)
331 PRK06701 short chain dehydroge 96.0 0.15 3.2E-06 46.8 12.9 116 27-146 45-182 (290)
332 cd05311 NAD_bind_2_malic_enz N 96.0 0.027 5.9E-07 50.2 7.8 100 27-150 24-133 (226)
333 PRK00436 argC N-acetyl-gamma-g 96.0 0.018 3.8E-07 54.6 6.9 34 28-61 2-35 (343)
334 PRK05854 short chain dehydroge 96.0 0.07 1.5E-06 49.5 10.9 170 28-201 14-205 (313)
335 PRK06523 short chain dehydroge 96.0 0.015 3.1E-07 52.0 6.1 35 28-64 9-43 (260)
336 PRK06172 short chain dehydroge 96.0 0.069 1.5E-06 47.4 10.3 35 28-64 7-41 (253)
337 PRK07453 protochlorophyllide o 96.0 0.048 1E-06 50.6 9.6 114 28-145 6-144 (322)
338 PRK05855 short chain dehydroge 96.0 0.098 2.1E-06 52.0 12.4 116 27-146 314-452 (582)
339 PRK08220 2,3-dihydroxybenzoate 96.0 0.056 1.2E-06 47.8 9.7 35 28-64 8-42 (252)
340 PLN02780 ketoreductase/ oxidor 96.0 0.051 1.1E-06 50.8 9.7 35 28-64 53-87 (320)
341 PRK14106 murD UDP-N-acetylmura 96.0 0.042 9.1E-07 53.6 9.5 125 28-163 5-134 (450)
342 smart00859 Semialdhyde_dh Semi 96.0 0.078 1.7E-06 42.1 9.5 102 30-149 1-103 (122)
343 PRK05884 short chain dehydroge 96.0 0.024 5.3E-07 49.8 7.1 34 29-64 1-34 (223)
344 PRK08265 short chain dehydroge 96.0 0.17 3.6E-06 45.4 12.7 35 28-64 6-40 (261)
345 cd01078 NAD_bind_H4MPT_DH NADP 96.0 0.017 3.6E-07 49.9 5.9 76 27-105 27-106 (194)
346 PRK12745 3-ketoacyl-(acyl-carr 95.9 0.074 1.6E-06 47.1 10.3 34 29-64 3-36 (256)
347 PRK07063 short chain dehydroge 95.9 0.13 2.9E-06 45.7 12.0 35 28-64 7-41 (260)
348 cd01483 E1_enzyme_family Super 95.9 0.055 1.2E-06 44.3 8.7 32 30-63 1-32 (143)
349 PRK07340 ornithine cyclodeamin 95.9 0.014 3E-07 54.4 5.7 92 5-105 103-197 (304)
350 PRK06718 precorrin-2 dehydroge 95.9 0.083 1.8E-06 46.2 10.3 71 27-105 9-79 (202)
351 TIGR02371 ala_DH_arch alanine 95.9 0.015 3.2E-07 54.7 5.9 72 27-104 127-200 (325)
352 PRK12743 oxidoreductase; Provi 95.9 0.28 6.1E-06 43.7 14.0 32 29-62 3-34 (256)
353 PRK08264 short chain dehydroge 95.9 0.043 9.4E-07 48.2 8.6 112 28-147 6-134 (238)
354 PRK07677 short chain dehydroge 95.9 0.16 3.4E-06 45.2 12.3 113 29-145 2-137 (252)
355 KOG1371 UDP-glucose 4-epimeras 95.9 0.074 1.6E-06 49.6 10.1 105 28-136 2-119 (343)
356 PRK06436 glycerate dehydrogena 95.9 0.036 7.8E-07 51.7 8.3 96 25-150 119-216 (303)
357 PRK15438 erythronate-4-phospha 95.9 0.032 6.9E-07 53.6 8.1 63 26-105 114-176 (378)
358 PRK08177 short chain dehydroge 95.9 0.029 6.2E-07 49.1 7.3 36 28-65 1-36 (225)
359 TIGR02632 RhaD_aldol-ADH rhamn 95.9 0.14 3.1E-06 52.9 13.4 35 28-64 414-448 (676)
360 PRK00141 murD UDP-N-acetylmura 95.9 0.047 1E-06 53.9 9.5 134 14-163 5-147 (473)
361 PRK08589 short chain dehydroge 95.9 0.29 6.4E-06 44.1 14.1 34 28-63 6-39 (272)
362 TIGR02853 spore_dpaA dipicolin 95.9 0.032 6.9E-07 51.6 7.8 96 27-150 150-246 (287)
363 PRK09242 tropinone reductase; 95.9 0.086 1.9E-06 46.9 10.4 78 28-107 9-99 (257)
364 PRK07074 short chain dehydroge 95.9 0.05 1.1E-06 48.4 8.9 34 29-64 3-36 (257)
365 PRK07904 short chain dehydroge 95.9 0.07 1.5E-06 47.8 9.8 115 27-145 7-145 (253)
366 PRK07688 thiamine/molybdopteri 95.9 0.028 6E-07 53.2 7.4 36 27-64 23-58 (339)
367 PRK07577 short chain dehydroge 95.9 0.035 7.6E-07 48.5 7.7 34 29-64 4-37 (234)
368 PRK06949 short chain dehydroge 95.9 0.09 1.9E-06 46.6 10.4 35 28-64 9-43 (258)
369 PRK05867 short chain dehydroge 95.8 0.15 3.3E-06 45.2 11.9 114 28-145 9-145 (253)
370 PRK15409 bifunctional glyoxyla 95.8 0.056 1.2E-06 50.8 9.4 95 25-146 142-237 (323)
371 PRK07097 gluconate 5-dehydroge 95.8 0.16 3.5E-06 45.5 12.1 34 29-64 11-44 (265)
372 PRK03562 glutathione-regulated 95.8 0.11 2.3E-06 53.3 12.1 137 28-196 400-541 (621)
373 PRK00421 murC UDP-N-acetylmura 95.8 0.081 1.8E-06 52.0 10.9 128 27-167 6-136 (461)
374 PRK12935 acetoacetyl-CoA reduc 95.8 0.063 1.4E-06 47.4 9.2 115 28-146 6-143 (247)
375 PRK00257 erythronate-4-phospha 95.8 0.035 7.7E-07 53.3 8.0 63 26-105 114-176 (381)
376 COG0771 MurD UDP-N-acetylmuram 95.8 0.061 1.3E-06 52.7 9.6 128 28-163 7-136 (448)
377 PRK06500 short chain dehydroge 95.8 0.16 3.6E-06 44.6 11.7 102 28-134 6-124 (249)
378 PRK12746 short chain dehydroge 95.8 0.19 4.2E-06 44.4 12.2 32 28-61 6-37 (254)
379 TIGR01692 HIBADH 3-hydroxyisob 95.7 0.031 6.7E-07 51.4 7.1 61 33-105 1-61 (288)
380 KOG1205 Predicted dehydrogenas 95.7 0.16 3.5E-06 46.7 11.6 119 27-149 11-153 (282)
381 PRK06935 2-deoxy-D-gluconate 3 95.7 0.13 2.7E-06 45.9 10.9 34 28-63 15-48 (258)
382 PRK09186 flagellin modificatio 95.7 0.15 3.3E-06 45.1 11.3 35 28-64 4-38 (256)
383 PRK08226 short chain dehydroge 95.7 0.084 1.8E-06 47.1 9.7 35 28-64 6-40 (263)
384 PRK05557 fabG 3-ketoacyl-(acyl 95.7 0.076 1.6E-06 46.5 9.2 115 28-146 5-142 (248)
385 TIGR01830 3oxo_ACP_reduc 3-oxo 95.7 0.072 1.6E-06 46.5 9.1 113 31-147 1-136 (239)
386 PRK09072 short chain dehydroge 95.7 0.091 2E-06 47.0 9.9 35 28-64 5-39 (263)
387 PRK09496 trkA potassium transp 95.7 0.036 7.7E-07 54.0 7.7 69 29-105 1-74 (453)
388 PRK08936 glucose-1-dehydrogena 95.7 0.48 1E-05 42.2 14.6 116 27-146 6-145 (261)
389 cd05312 NAD_bind_1_malic_enz N 95.7 0.012 2.5E-07 54.1 3.9 105 28-149 25-144 (279)
390 COG0289 DapB Dihydrodipicolina 95.7 0.098 2.1E-06 47.5 9.8 76 27-103 1-76 (266)
391 PRK13302 putative L-aspartate 95.7 0.026 5.7E-07 51.7 6.2 69 27-105 5-76 (271)
392 PRK05690 molybdopterin biosynt 95.6 0.055 1.2E-06 48.8 8.2 36 27-64 31-66 (245)
393 PRK08306 dipicolinate synthase 95.6 0.063 1.4E-06 49.8 8.7 67 27-104 151-218 (296)
394 PRK06113 7-alpha-hydroxysteroi 95.6 0.24 5.2E-06 44.0 12.3 36 27-64 10-45 (255)
395 PRK07825 short chain dehydroge 95.6 0.029 6.3E-07 50.6 6.3 113 28-146 5-137 (273)
396 PRK07062 short chain dehydroge 95.6 0.25 5.5E-06 44.1 12.4 115 29-146 9-146 (265)
397 PRK07985 oxidoreductase; Provi 95.6 0.12 2.6E-06 47.5 10.4 115 29-146 50-186 (294)
398 PLN02306 hydroxypyruvate reduc 95.6 0.072 1.6E-06 51.3 9.1 104 25-145 162-272 (386)
399 PRK08324 short chain dehydroge 95.6 0.17 3.7E-06 52.3 12.5 36 27-64 421-456 (681)
400 cd00762 NAD_bind_malic_enz NAD 95.5 0.011 2.3E-07 53.6 3.1 124 28-174 25-167 (254)
401 TIGR00518 alaDH alanine dehydr 95.5 0.03 6.4E-07 53.7 6.4 76 26-107 165-241 (370)
402 PRK07478 short chain dehydroge 95.5 0.24 5.1E-06 44.0 11.9 155 29-201 7-185 (254)
403 PTZ00075 Adenosylhomocysteinas 95.5 0.047 1E-06 53.7 7.8 91 26-147 252-343 (476)
404 PRK07109 short chain dehydroge 95.5 0.27 6E-06 46.1 12.8 114 28-146 8-144 (334)
405 PRK06463 fabG 3-ketoacyl-(acyl 95.5 0.078 1.7E-06 47.2 8.8 114 28-146 7-138 (255)
406 PRK06444 prephenate dehydrogen 95.5 0.028 6.1E-07 49.1 5.7 28 29-58 1-28 (197)
407 PRK08703 short chain dehydroge 95.5 0.89 1.9E-05 39.9 15.5 35 28-64 6-40 (239)
408 PRK01710 murD UDP-N-acetylmura 95.5 0.071 1.5E-06 52.4 9.1 124 29-163 15-143 (458)
409 PRK06124 gluconate 5-dehydroge 95.5 0.17 3.7E-06 44.9 10.9 36 27-64 10-45 (256)
410 cd00757 ThiF_MoeB_HesA_family 95.5 0.037 8.1E-07 49.2 6.5 36 27-64 20-55 (228)
411 PF03435 Saccharop_dh: Sacchar 95.5 0.0083 1.8E-07 57.4 2.4 74 31-107 1-78 (386)
412 PRK12824 acetoacetyl-CoA reduc 95.5 0.16 3.4E-06 44.5 10.5 34 29-64 3-36 (245)
413 PRK07578 short chain dehydroge 95.5 0.055 1.2E-06 46.3 7.4 66 29-107 1-66 (199)
414 PRK14194 bifunctional 5,10-met 95.5 0.039 8.5E-07 51.2 6.7 57 26-107 157-213 (301)
415 TIGR01470 cysG_Nterm siroheme 95.5 0.11 2.4E-06 45.6 9.3 69 29-105 10-78 (205)
416 PRK06407 ornithine cyclodeamin 95.4 0.027 5.9E-07 52.4 5.6 94 4-104 95-190 (301)
417 PRK12744 short chain dehydroge 95.4 0.56 1.2E-05 41.7 14.0 33 28-62 8-40 (257)
418 PRK06141 ornithine cyclodeamin 95.4 0.032 6.9E-07 52.2 6.1 91 6-104 104-197 (314)
419 PRK06171 sorbitol-6-phosphate 95.4 0.057 1.2E-06 48.3 7.6 35 28-64 9-43 (266)
420 PRK08618 ornithine cyclodeamin 95.4 0.034 7.4E-07 52.2 6.3 73 28-105 127-201 (325)
421 PRK09424 pntA NAD(P) transhydr 95.4 0.17 3.8E-06 50.4 11.5 109 23-147 160-287 (509)
422 PRK07775 short chain dehydroge 95.4 0.18 3.9E-06 45.6 10.9 36 27-64 9-44 (274)
423 TIGR01296 asd_B aspartate-semi 95.4 0.022 4.7E-07 53.9 4.8 70 30-106 1-71 (339)
424 TIGR01082 murC UDP-N-acetylmur 95.4 0.11 2.3E-06 50.9 9.9 129 30-171 1-132 (448)
425 PRK13303 L-aspartate dehydroge 95.4 0.19 4.1E-06 45.9 10.8 87 28-140 1-89 (265)
426 PRK06719 precorrin-2 dehydroge 95.4 0.2 4.4E-06 42.0 10.2 66 28-104 13-78 (157)
427 PRK09496 trkA potassium transp 95.4 0.13 2.9E-06 50.0 10.4 102 26-149 229-335 (453)
428 TIGR02355 moeB molybdopterin s 95.4 0.054 1.2E-06 48.8 7.1 36 27-64 23-58 (240)
429 COG2344 AT-rich DNA-binding pr 95.4 0.057 1.2E-06 46.6 6.7 97 26-150 82-182 (211)
430 PRK05599 hypothetical protein; 95.4 0.76 1.6E-05 40.8 14.5 154 29-200 1-177 (246)
431 PRK07035 short chain dehydroge 95.3 0.13 2.9E-06 45.5 9.6 34 29-64 9-42 (252)
432 PF02423 OCD_Mu_crystall: Orni 95.3 0.018 3.9E-07 53.8 4.1 89 8-104 109-200 (313)
433 cd00401 AdoHcyase S-adenosyl-L 95.3 0.11 2.4E-06 50.4 9.6 90 27-147 201-291 (413)
434 PRK08339 short chain dehydroge 95.3 0.43 9.4E-06 42.9 13.0 114 29-146 9-144 (263)
435 PRK05476 S-adenosyl-L-homocyst 95.3 0.13 2.7E-06 50.2 9.9 92 27-148 211-302 (425)
436 PRK08628 short chain dehydroge 95.3 0.25 5.4E-06 43.9 11.3 35 28-64 7-41 (258)
437 TIGR00036 dapB dihydrodipicoli 95.3 0.11 2.3E-06 47.5 9.0 73 28-104 1-76 (266)
438 TIGR02685 pter_reduc_Leis pter 95.3 0.57 1.2E-05 42.0 13.7 31 30-62 3-33 (267)
439 PLN02858 fructose-bisphosphate 95.3 0.062 1.3E-06 59.6 8.6 68 26-105 322-389 (1378)
440 PRK08416 7-alpha-hydroxysteroi 95.3 0.9 1.9E-05 40.5 14.9 33 28-62 8-40 (260)
441 PRK12747 short chain dehydroge 95.3 0.49 1.1E-05 41.9 13.1 33 28-62 4-36 (252)
442 PRK08063 enoyl-(acyl carrier p 95.3 0.32 7E-06 42.8 11.8 30 29-60 5-34 (250)
443 PRK04308 murD UDP-N-acetylmura 95.2 0.12 2.7E-06 50.3 9.8 129 28-163 5-136 (445)
444 cd01080 NAD_bind_m-THF_DH_Cycl 95.2 0.049 1.1E-06 46.4 6.1 56 26-107 42-98 (168)
445 PRK13535 erythrose 4-phosphate 95.2 0.1 2.3E-06 49.3 8.8 35 28-63 1-35 (336)
446 PRK08291 ectoine utilization p 95.2 0.048 1E-06 51.4 6.5 74 27-105 131-206 (330)
447 PRK02705 murD UDP-N-acetylmura 95.2 0.11 2.4E-06 50.8 9.4 125 30-163 2-135 (459)
448 PRK06940 short chain dehydroge 95.2 0.2 4.4E-06 45.4 10.5 110 30-146 4-126 (275)
449 KOG1201 Hydroxysteroid 17-beta 95.2 0.39 8.5E-06 44.4 12.1 113 27-145 37-172 (300)
450 PRK06823 ornithine cyclodeamin 95.2 0.048 1E-06 51.1 6.4 93 5-104 106-200 (315)
451 PRK06139 short chain dehydroge 95.2 0.2 4.3E-06 47.1 10.6 35 28-64 7-41 (330)
452 PRK05872 short chain dehydroge 95.2 0.32 6.9E-06 44.6 11.7 35 28-64 9-43 (296)
453 PRK06932 glycerate dehydrogena 95.1 0.088 1.9E-06 49.3 8.0 90 25-145 144-233 (314)
454 PF02882 THF_DHG_CYH_C: Tetrah 95.1 0.09 2E-06 44.4 7.2 57 26-107 34-90 (160)
455 PRK08261 fabG 3-ketoacyl-(acyl 95.1 0.15 3.2E-06 49.7 9.9 117 27-146 209-343 (450)
456 PRK11790 D-3-phosphoglycerate 95.1 0.11 2.4E-06 50.4 8.9 73 16-104 138-211 (409)
457 PF07993 NAD_binding_4: Male s 95.1 0.086 1.9E-06 47.2 7.6 111 33-145 1-134 (249)
458 PRK08223 hypothetical protein; 95.1 0.034 7.5E-07 51.3 5.0 36 27-64 26-61 (287)
459 PRK06077 fabG 3-ketoacyl-(acyl 95.1 0.17 3.8E-06 44.6 9.5 33 28-62 6-38 (252)
460 PRK09134 short chain dehydroge 95.1 0.25 5.4E-06 44.0 10.5 34 28-63 9-42 (258)
461 PRK08017 oxidoreductase; Provi 95.0 0.13 2.8E-06 45.5 8.6 33 30-64 4-36 (256)
462 PRK08217 fabG 3-ketoacyl-(acyl 95.0 0.32 7E-06 42.7 11.1 35 28-64 5-39 (253)
463 PRK07589 ornithine cyclodeamin 95.0 0.05 1.1E-06 51.7 6.0 90 8-104 110-201 (346)
464 PRK08410 2-hydroxyacid dehydro 95.0 0.12 2.6E-06 48.3 8.5 91 25-145 142-232 (311)
465 PRK13301 putative L-aspartate 95.0 0.13 2.8E-06 46.9 8.3 95 28-149 2-99 (267)
466 TIGR00936 ahcY adenosylhomocys 95.0 0.16 3.4E-06 49.3 9.4 91 27-147 194-284 (406)
467 PRK06550 fabG 3-ketoacyl-(acyl 95.0 0.15 3.2E-06 44.6 8.6 68 29-107 6-78 (235)
468 PRK06487 glycerate dehydrogena 95.0 0.12 2.6E-06 48.4 8.4 89 25-145 145-233 (317)
469 COG2423 Predicted ornithine cy 94.9 0.045 9.8E-07 51.5 5.5 95 4-104 107-203 (330)
470 cd01485 E1-1_like Ubiquitin ac 94.9 0.15 3.3E-06 44.4 8.5 35 28-64 19-53 (198)
471 PRK06947 glucose-1-dehydrogena 94.9 0.29 6.2E-06 43.2 10.4 32 29-62 3-34 (248)
472 COG0702 Predicted nucleoside-d 94.9 0.046 1E-06 48.8 5.3 74 29-107 1-74 (275)
473 PRK06114 short chain dehydroge 94.9 0.18 3.9E-06 44.9 9.1 34 29-64 9-42 (254)
474 PRK06200 2,3-dihydroxy-2,3-dih 94.9 0.33 7.2E-06 43.3 10.8 35 28-64 6-40 (263)
475 TIGR00978 asd_EA aspartate-sem 94.9 0.064 1.4E-06 50.7 6.3 36 29-64 1-36 (341)
476 TIGR01035 hemA glutamyl-tRNA r 94.9 0.083 1.8E-06 51.4 7.2 102 27-149 179-281 (417)
477 PRK02006 murD UDP-N-acetylmura 94.8 0.17 3.7E-06 50.3 9.6 130 28-163 7-147 (498)
478 cd01492 Aos1_SUMO Ubiquitin ac 94.8 0.2 4.4E-06 43.6 9.0 36 27-64 20-55 (197)
479 PRK07792 fabG 3-ketoacyl-(acyl 94.8 0.26 5.5E-06 45.6 10.2 35 27-63 11-45 (306)
480 PF13241 NAD_binding_7: Putati 94.8 0.32 6.9E-06 37.6 9.2 63 27-104 6-68 (103)
481 PRK11863 N-acetyl-gamma-glutam 94.8 0.053 1.2E-06 50.7 5.5 26 28-53 2-27 (313)
482 PLN00203 glutamyl-tRNA reducta 94.8 0.11 2.4E-06 52.0 8.0 105 27-149 265-373 (519)
483 COG1064 AdhP Zn-dependent alco 94.8 0.44 9.6E-06 45.0 11.6 129 26-185 165-299 (339)
484 PRK06483 dihydromonapterin red 94.8 0.23 5E-06 43.5 9.4 34 29-64 3-36 (236)
485 TIGR01829 AcAcCoA_reduct aceto 94.8 0.32 7E-06 42.5 10.3 31 30-62 2-32 (242)
486 PRK05786 fabG 3-ketoacyl-(acyl 94.8 0.51 1.1E-05 41.2 11.6 34 29-64 6-39 (238)
487 TIGR02992 ectoine_eutC ectoine 94.8 0.072 1.6E-06 50.0 6.4 74 27-105 128-203 (326)
488 PLN02858 fructose-bisphosphate 94.8 0.089 1.9E-06 58.4 7.9 66 28-105 4-69 (1378)
489 TIGR01087 murD UDP-N-acetylmur 94.7 0.15 3.3E-06 49.5 8.7 125 30-163 1-128 (433)
490 PRK07201 short chain dehydroge 94.7 0.29 6.2E-06 50.0 11.1 38 25-64 368-405 (657)
491 PF07991 IlvN: Acetohydroxy ac 94.7 0.084 1.8E-06 44.6 5.8 65 28-104 4-68 (165)
492 PRK01438 murD UDP-N-acetylmura 94.7 0.3 6.6E-06 48.1 10.8 127 27-163 15-148 (480)
493 cd01079 NAD_bind_m-THF_DH NAD 94.6 0.12 2.7E-06 44.9 7.0 74 26-107 60-137 (197)
494 PRK08664 aspartate-semialdehyd 94.6 0.077 1.7E-06 50.3 6.2 34 28-62 3-36 (349)
495 PRK06125 short chain dehydroge 94.6 0.91 2E-05 40.4 12.9 115 28-146 7-140 (259)
496 PRK03803 murD UDP-N-acetylmura 94.5 0.21 4.5E-06 48.8 9.2 126 29-163 7-134 (448)
497 PRK13403 ketol-acid reductoiso 94.5 0.089 1.9E-06 49.4 6.2 68 24-104 12-79 (335)
498 PRK07877 hypothetical protein; 94.5 0.13 2.8E-06 53.4 7.9 76 27-104 106-204 (722)
499 PF02254 TrkA_N: TrkA-N domain 94.4 0.42 9.1E-06 37.2 9.2 92 31-146 1-97 (116)
500 PRK14179 bifunctional 5,10-met 94.4 0.11 2.3E-06 48.0 6.4 57 26-107 156-212 (284)
No 1
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1e-67 Score=488.77 Aligned_cols=272 Identities=68% Similarity=1.047 Sum_probs=248.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~ 108 (300)
|||+||||+|+||+++|+.|+.+++++||+|+|++.++|+++||+|+..+..++...+++|++++++|||+||++||.|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 69999996699999999999999999999999999779999999999754456543234456789999999999999999
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHHHH
Q 022263 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK 188 (300)
Q Consensus 109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la~~ 188 (300)
+||++|+|++..|.++++++++.|++++|++|+|++|||+|+||++++++.++.+++|++||+|+|.|||+|+++++|++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~ 160 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL 160 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988777777999999999999999999999999
Q ss_pred cCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHHHc
Q 022263 189 ANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLK 268 (300)
Q Consensus 189 l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai~~ 268 (300)
+|+++++|+++|||||+|++|||+||++.+..+++++++++|.++++++|++|+++|.|||+|+||+|.|+++++++|++
T Consensus 161 l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~ 240 (310)
T cd01337 161 LGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLR 240 (310)
T ss_pred hCcCHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHH
Confidence 99999999999999996689999999998866666667899999999999999998657899999999999999999999
Q ss_pred cCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263 269 GLNGVPDVVECSFVQSTVTELPFFASKRAWKN 300 (300)
Q Consensus 269 ~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~ 300 (300)
|+++++.+++|++++++..+++|||+||++|+
T Consensus 241 ~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~ 272 (310)
T cd01337 241 GLKGEKGVIECAYVESDVTEAPFFATPVELGK 272 (310)
T ss_pred hcCCCcceEEEEEEeccCCCceEEEEEEEEeC
Confidence 87778889999988877456899999999985
No 2
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=1.3e-66 Score=482.11 Aligned_cols=271 Identities=61% Similarity=0.942 Sum_probs=246.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK 109 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~~ 109 (300)
||+||||+|+||+++|+.|+.+++++||+|+|++++.|+++||+|...+..+..+.+.++++++++|||+||++||.|++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 79999977999999999999999999999999988899999999987444455432223456899999999999999999
Q ss_pred CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHHHHc
Q 022263 110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA 189 (300)
Q Consensus 110 ~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la~~l 189 (300)
||++|+|++..|.+|+++++++|++++|++++|++|||+|+|++++++++++.+++|++||||+|.|||+||++++|+++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l 160 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988777779999999998899999999999999
Q ss_pred CCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHHHcc
Q 022263 190 NVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269 (300)
Q Consensus 190 ~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai~~~ 269 (300)
++++++|+++||||||++||||+||+++....++++++++|.++++++|++|+++|.|||+|+||+|.|+++++++|+++
T Consensus 161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~ 240 (312)
T TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240 (312)
T ss_pred CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence 99999999999999976699999999985444666668999999999999999975579999999999999999999987
Q ss_pred CCCCCCceeeeeeeCCC-CCcCEEEEeEEecC
Q 022263 270 LNGVPDVVECSFVQSTV-TELPFFASKRAWKN 300 (300)
Q Consensus 270 ~~~~~~v~~~s~v~~~~-~~~~~~S~Pv~lg~ 300 (300)
+.+++.++||++++|+| .+++|||+||++|+
T Consensus 241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~ 272 (312)
T TIGR01772 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGK 272 (312)
T ss_pred hCCCccEEEEEEEccCCCcCceEEEEEEEEcC
Confidence 66788999999999998 57999999999985
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.4e-64 Score=462.20 Aligned_cols=259 Identities=41% Similarity=0.598 Sum_probs=230.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCC--cEEEEecCCccccccCCCCEEEEcC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
+||+|||| |+||+++++.|+++++.+||+|+|+++ ++|.++||.|+.++. ..+... +.+ +++++|||+||++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeC
Confidence 59999997 999999999998888877999999974 689999999997643 334332 234 48899999999999
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHH
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT 183 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~ 183 (300)
|.||||||+|+||+..|++|+++++++|+++|||++++++|||+|+|||++ ++.++ +|++|+||+ |.|||+||++
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~---~k~sg-~p~~rvig~gt~LDsaR~~~ 153 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA---MKFSG-FPKNRVIGSGTVLDSARFRT 153 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH---HHhcC-CCccceecccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877663 45555 999999999 7999999999
Q ss_pred HHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----C----CCHHHHHHHHHHHhchhhhhhhhccCCCCCccch
Q 022263 184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255 (300)
Q Consensus 184 ~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~----~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~ 255 (300)
+||+++++++++|++||+||| |+||||+||++++++ + .+++++++|.++||++|++|+++| |.| |+||+
T Consensus 154 ~lae~~~v~~~~V~~~ViGeH-Gdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~ 230 (313)
T COG0039 154 FLAEKLGVSPKDVHAYVIGEH-GDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP 230 (313)
T ss_pred HHHHHhCCChhHceeeEeccC-CCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence 999999999999999999999 689999999999764 1 223567899999999999999976 444 99999
Q ss_pred HHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263 256 AYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN 300 (300)
Q Consensus 256 A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~ 300 (300)
|.|+++++++|++| +++|+|+| |++|+| .+++||++||++|+
T Consensus 231 A~a~a~~~~ail~d---~~~vl~~s~~l~G~yg~~dv~~gvP~~lg~ 274 (313)
T COG0039 231 AAALARMVEAILRD---EKRVLPVSVYLDGEYGVEDVYFGVPAVLGK 274 (313)
T ss_pred HHHHHHHHHHHHcC---CCceEEEEEeecCccCcCCeEEEeeEEEcC
Confidence 99999999999998 57899988 799999 78999999999994
No 4
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=2.8e-63 Score=461.59 Aligned_cols=274 Identities=78% Similarity=1.162 Sum_probs=251.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
.+.||+||||+|+||+++++.|+.+++++||+|+|+++++++++||+|+..+..+..+.+++|++++++|||+||++||.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 45699999977999999999999999999999999988899999999998765666544566788999999999999999
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHH
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la 186 (300)
|++||++|+|++..|.++++++++++++++|+++++++|||+|.++++++++.++.+++||+|++|++.||++||++++|
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA 176 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVA 176 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988998866666679999999999999999999999
Q ss_pred HHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHH
Q 022263 187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 266 (300)
Q Consensus 187 ~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai 266 (300)
+++|+++.+|+++|+|||||++|||+||++++...++++++++|.++++++|++|+++|.|||+|+||+|.++++++++|
T Consensus 177 ~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~ai 256 (323)
T PLN00106 177 EKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADAC 256 (323)
T ss_pred HHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999988899999999987655666678999999999999999975578999999999999999999
Q ss_pred HccCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263 267 LKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN 300 (300)
Q Consensus 267 ~~~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~ 300 (300)
++|+++++.++|||++++++.+++|||+||++|+
T Consensus 257 l~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~ 290 (323)
T PLN00106 257 LRGLNGEADVVECSYVQSEVTELPFFASKVRLGR 290 (323)
T ss_pred HhccCCCceEEEEEEECcccCCceEEEEEEEEcC
Confidence 9998888899999998887643499999999985
No 5
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-60 Score=441.88 Aligned_cols=273 Identities=59% Similarity=0.889 Sum_probs=241.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
-.+|+||+||||+|+||+++++.|+..++++||+|+|+++++++++||+|+.....+.......+++++++|||+||+++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 35788999999779999999999998899999999999778999999999875433443221123358999999999999
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHH
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~ 184 (300)
|.+++++++|.+++..|++++++++++|++++|+++++++|||+|.|+++..+..++.+++||+||||++.|||+||+++
T Consensus 85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~ 164 (321)
T PTZ00325 85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKF 164 (321)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877643333444599999999988999999999
Q ss_pred HHHHcCCCCCceEEEEEecCCCC-ceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHH
Q 022263 185 YAGKANVNVAEVNVPVVGGHAGI-TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFA 263 (300)
Q Consensus 185 la~~l~v~~~~V~~~v~G~h~g~-t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i 263 (300)
+|++++++|++|++|||||| |+ +|||+||++ +..++++++++|.++++++|++|+++|.|||+|+||||.++++++
T Consensus 165 la~~l~v~~~~V~~~VlGeH-Gd~s~v~~~S~~--g~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~ 241 (321)
T PTZ00325 165 VAEALGMNPYDVNVPVVGGH-SGVTIVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWS 241 (321)
T ss_pred HHHHhCcChhheEEEEEeec-CCcccccchhcc--CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHH
Confidence 99999999999999999999 56 899999999 445667779999999999999999987677999999999999999
Q ss_pred HHHHccCCCCCCceeeeeeeCCCC-CcCEEEEeEEecC
Q 022263 264 DACLKGLNGVPDVVECSFVQSTVT-ELPFFASKRAWKN 300 (300)
Q Consensus 264 ~ai~~~~~~~~~v~~~s~v~~~~~-~~~~~S~Pv~lg~ 300 (300)
++|++|+++++.+++|++++|+|+ +++|||.||++|+
T Consensus 242 ~ail~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~ 279 (321)
T PTZ00325 242 TSVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGK 279 (321)
T ss_pred HHHHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcC
Confidence 999998777889999999999995 7999999999985
No 6
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.3e-60 Score=440.36 Aligned_cols=256 Identities=24% Similarity=0.325 Sum_probs=227.1
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC---CcEEEEecCCccccccCCCCEEEEcC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR---SEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~---~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
||+|||| |+||+++|+.|+.+++++||+|+|+++ ++|+++||+|+... ..++.+. .| +++++|||+||++|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITA 76 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECC
Confidence 7999996 999999999999999999999999965 68999999997542 2455553 35 48899999999999
Q ss_pred CCCCCCCCc--chhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263 105 GVPRKPGMT--RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA 181 (300)
Q Consensus 105 g~~~~~g~~--r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~ 181 (300)
|.|++||++ |+|++..|++|++++++++++++|++++|++|||+|+|||++ ++.++ ||++|+||+ |.|||+||
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~ 152 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA---ATEFD-YPANKVIGTGTMLDTARL 152 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH---HHHhC-cChhheecccchHHHHHH
Confidence 999999999 699999999999999999999999999999999999776653 44555 999999999 89999999
Q ss_pred HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCC----------CCHHHHHHHHHHHhchhhhhhhhccCCCCC
Q 022263 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN----------LADEDIKALTKRTQDGGTEVVEAKAGKGSA 251 (300)
Q Consensus 182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~----------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t 251 (300)
++++|+++++++++|++|||||| |++|||+||++++++. .++.++++|.++++++|++|++ +||+|
T Consensus 153 ~~~la~~l~v~~~~V~~~ViGeH-Gds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t 228 (307)
T cd05290 153 RRIVADKYGVDPKNVTGYVLGEH-GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWT 228 (307)
T ss_pred HHHHHHHhCCCcccEEEEEEecC-CCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCee
Confidence 99999999999999999999999 6899999999987641 1233478999999999999998 57899
Q ss_pred ccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263 252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN 300 (300)
Q Consensus 252 ~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~ 300 (300)
+||+|.++++++++|+.| ++.++|+| +++|+| ++++|||+||++|+
T Consensus 229 ~~~ia~a~~~ii~ail~d---~~~v~~vsv~~~G~yg~~~v~~svP~~ig~ 276 (307)
T cd05290 229 NAGIAKSASRLIKAILLD---ERSILPVCTLLSGEYGLSDVALSLPTVIGA 276 (307)
T ss_pred hHHHHHHHHHHHHHHHhC---CCeEEEEEEeeCCccCCCCEEEEEEEEEeC
Confidence 999999999999999987 57899988 688888 57899999999985
No 7
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.8e-60 Score=417.92 Aligned_cols=258 Identities=25% Similarity=0.406 Sum_probs=231.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC---CcEEEEecCCccccccCCCCEEE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR---SEVAGYMGNDQLGQALEDSDVVI 101 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~---~~v~~~~~t~d~~~a~~~aDiVI 101 (300)
+..||.|+|+ |+||.++|+.++.+++.+||+|+|.++ .+|++|||+|.... +++.. ..|+ .+.+++++||
T Consensus 19 ~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~Dy-~~sa~S~lvI 93 (332)
T KOG1495|consen 19 KHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKDY-SVSANSKLVI 93 (332)
T ss_pred cCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCcc-cccCCCcEEE
Confidence 3569999996 999999999999999999999999964 69999999998742 23332 3465 7899999999
Q ss_pred EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHH
Q 022263 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR 180 (300)
Q Consensus 102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R 180 (300)
+|||..+++|++|++++++|+.|++.+.+++.+|.||++++++|||+|.|||+ +|+.+| ||++|+||. |.|||+|
T Consensus 94 iTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv---~wKLSg-fP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 94 ITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYV---TWKLSG-FPKNRVIGSGCNLDSAR 169 (332)
T ss_pred EecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHH---HHHHcC-CcccceeccCcCccHHH
Confidence 99999999999999999999999999999999999999999999999976665 466665 999999999 8999999
Q ss_pred HHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC------------CCCHHHHHHHHHHHhchhhhhhhhccCC
Q 022263 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAGK 248 (300)
Q Consensus 181 ~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~------------~~~~~~~~~i~~~v~~~g~~i~~~~~gk 248 (300)
||++++++||++|+++++||+||| ||+.||+||.+++.+ ..+++.|+++-+++.+.++||+++ |
T Consensus 170 FryLi~~~Lg~~pss~hgwIiGEH-GdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl---K 245 (332)
T KOG1495|consen 170 FRYLIGNRLGVHPSSCHGWIIGEH-GDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL---K 245 (332)
T ss_pred HHHHHHHHhCCCcccceEEEeecc-CCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh---c
Confidence 999999999999999999999999 689999999997652 356788999999999999999996 5
Q ss_pred CCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN 300 (300)
Q Consensus 249 g~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~ 300 (300)
|+|+|++|.++++++++|++|+ +.+.|+| -++|.| .+++|||+||.||+
T Consensus 246 GyTswaIglsva~l~~ail~n~---~~i~~Vst~~kg~~gI~~dVflSlPc~l~~ 297 (332)
T KOG1495|consen 246 GYTSWAIGLSVADLAQAILRNL---RRIHPVSTMVKGLYGIDDDVFLSLPCLLGA 297 (332)
T ss_pred CchHHHHHHHHHHHHHHHHhCc---CceeeeeeccccccCCCCceEEecceeecC
Confidence 9999999999999999999984 5688888 589888 47999999999985
No 8
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=5.5e-60 Score=440.12 Aligned_cols=264 Identities=30% Similarity=0.379 Sum_probs=229.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCCC--cEEEEecCCcccccc
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRS--EVAGYMGNDQLGQAL 94 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~ 94 (300)
++|.||+||||+|+||+++++.|+.+++++ ||+|+|+++ ++|+++||+|+..+. .+... +.+ ++++
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~ 77 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAF 77 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHh
Confidence 368899999977999999999999999999 999999943 689999999997431 23332 233 5899
Q ss_pred CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~ 173 (300)
+|||+||++||.+++|||+|+|++..|++|+++++++|++++| +++++++|||+|+|||++ ++.+++||++||||+
T Consensus 78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g~p~~rViG~ 154 (323)
T TIGR01759 78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA---SKNAPDIPPKNFSAM 154 (323)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEEe
Confidence 9999999999999999999999999999999999999999998 999999999999777663 455515999999999
Q ss_pred eehhHHHHHHHHHHHcCCCCCceE-EEEEecCCCCceeeccCcCcCCC----C-CCHH-H-HHHHHHHHhchhhhhhhhc
Q 022263 174 TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA----N-LADE-D-IKALTKRTQDGGTEVVEAK 245 (300)
Q Consensus 174 t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h~g~t~vp~~S~~~~~~----~-~~~~-~-~~~i~~~v~~~g~~i~~~~ 245 (300)
|.|||+||++++|++++++|++|+ .+||||| |++|+|+||++++++ . ++++ + +++|.++++++|++|++
T Consensus 155 t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~-- 231 (323)
T TIGR01759 155 TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNH-SNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE-- 231 (323)
T ss_pred eHHHHHHHHHHHHHHhCcChHHeEEeEEEecC-CCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh--
Confidence 999999999999999999999995 5699999 579999999998764 2 2333 2 68999999999999998
Q ss_pred cCCCCCccc-hHHHHHHHHHHHHccCCCCCCceeee-eeeC-CC--CCcCEEEEeEEecC
Q 022263 246 AGKGSATLS-MAYAGAIFADACLKGLNGVPDVVECS-FVQS-TV--TELPFFASKRAWKN 300 (300)
Q Consensus 246 ~gkg~t~~~-~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~-~~--~~~~~~S~Pv~lg~ 300 (300)
+||+|+|+ +|.|+++++++|++|++. +.++||| |++| +| |+++|||+||+||+
T Consensus 232 -~kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~ 289 (323)
T TIGR01759 232 -ARGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKG 289 (323)
T ss_pred -ccCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcC
Confidence 47899995 779999999999998531 6799999 7899 88 47999999999995
No 9
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.8e-60 Score=418.30 Aligned_cols=287 Identities=70% Similarity=1.035 Sum_probs=275.7
Q ss_pred cccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccc
Q 022263 14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA 93 (300)
Q Consensus 14 ~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a 93 (300)
++.-.|.|+....++.||+|.||+|-+|+.+.++|.++++.+++.|||+....|.+.||+|...+..+..+.+...++++
T Consensus 14 ~~~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~a 93 (345)
T KOG1494|consen 14 SSGPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENA 93 (345)
T ss_pred ccCCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHH
Confidence 44567789999999999999999999999999999999999999999999899999999999988889998888889999
Q ss_pred cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~ 173 (300)
+++||+|||-||+||||||+|+||+..|+.|+++++..+.++||+|.+.++|||+|+.++++++++++.|.|+|+|++|+
T Consensus 94 l~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV 173 (345)
T KOG1494|consen 94 LKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV 173 (345)
T ss_pred hcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceece
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHcCCCC-CceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCc
Q 022263 174 TTLDVVRAKTFYAGKANVNV-AEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT 252 (300)
Q Consensus 174 t~Lds~R~~~~la~~l~v~~-~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~ 252 (300)
|.||..|.++++++.++++| ++++++|+|+|.|.|++|++|+.++...+++++++.++.+++.+|.|+.+.|.|+||+.
T Consensus 174 TtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSAT 253 (345)
T KOG1494|consen 174 TTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSAT 253 (345)
T ss_pred ehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchh
Confidence 99999999999999999999 55999999999999999999999998889999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHccCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263 253 LSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN 300 (300)
Q Consensus 253 ~~~A~a~~~~i~ai~~~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~ 300 (300)
+|+|+|.++++.+.+++++++..++.|+||++...+..||++|++||+
T Consensus 254 LSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~ 301 (345)
T KOG1494|consen 254 LSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGK 301 (345)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecC
Confidence 999999999999999999999999999999998767789999999996
No 10
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-59 Score=434.54 Aligned_cols=270 Identities=56% Similarity=0.855 Sum_probs=239.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCC-cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
|||+||||+|.+|+++++.|.. .+...+++|+|+++ ..++++|++|......+... ..+|++++++|+|+||+++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence 7999999889999999998865 56678999999865 46778999985322234431 134666899999999999999
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHH
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la 186 (300)
+++++++|.|++..|+++++++++.|++++|+++++++|||+|+||+++++.+++.+++|++||||+|.|||+|+++++|
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia 159 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA 159 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988776666669999999999999999999999
Q ss_pred HHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHH
Q 022263 187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 266 (300)
Q Consensus 187 ~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai 266 (300)
+++++++++|+++||||||+++|||+||++ .+..++++++++|.++++++|++|++.|.|||+|+||+|.|+++++++|
T Consensus 160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai 238 (312)
T PRK05086 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238 (312)
T ss_pred HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence 999999999999999999877999999999 4456777779999999999999999976577999999999999999999
Q ss_pred HccCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263 267 LKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN 300 (300)
Q Consensus 267 ~~~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~ 300 (300)
++++++++.++|+++++++..+++|||+||++|+
T Consensus 239 ~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~ 272 (312)
T PRK05086 239 VRALQGEQGVVECAYVEGDGKYARFFAQPVLLGK 272 (312)
T ss_pred HhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcC
Confidence 9998888899998888887446899999999985
No 11
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=8.3e-60 Score=439.43 Aligned_cols=263 Identities=27% Similarity=0.340 Sum_probs=229.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCC--CcEEEEecCCcccccc
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQAL 94 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~ 94 (300)
++|+||+||||+|+||+++++.|...++++ ||+|+|+++ ++|+++||+|+.++ ..++.. +.+ ++++
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~ 78 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAF 78 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHh
Confidence 367899999977999999999999999998 999999943 68999999998733 233332 233 5899
Q ss_pred CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~ 173 (300)
+|||+||++||.+++||++|+|++..|++|+++++++|++++ |++++|++|||+|+|||++ ++.+|+||++||||+
T Consensus 79 ~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g~p~~rViG~ 155 (326)
T PRK05442 79 KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA---MKNAPDLPAENFTAM 155 (326)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH---HHHcCCCCHHHEEee
Confidence 999999999999999999999999999999999999999988 7999999999999877663 466646999999999
Q ss_pred eehhHHHHHHHHHHHcCCCCCceEEE-EEecCCCCceeeccCcCcCCC----C-CCH-HH-HHHHHHHHhchhhhhhhhc
Q 022263 174 TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATPKA----N-LAD-ED-IKALTKRTQDGGTEVVEAK 245 (300)
Q Consensus 174 t~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h~g~t~vp~~S~~~~~~----~-~~~-~~-~~~i~~~v~~~g~~i~~~~ 245 (300)
|.|||+||+++||++++++|++|+++ ||||| |++|||+||++++++ + +++ +| +++|.++++++|++|++
T Consensus 156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeH-G~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~-- 232 (326)
T PRK05442 156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNH-SATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE-- 232 (326)
T ss_pred eHHHHHHHHHHHHHHhCcChHHeEEeEEEECC-cCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh--
Confidence 99999999999999999999999996 58999 579999999999874 1 333 32 67999999999999998
Q ss_pred cCCCCCccchHHH-HHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEec
Q 022263 246 AGKGSATLSMAYA-GAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWK 299 (300)
Q Consensus 246 ~gkg~t~~~~A~a-~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg 299 (300)
+||+|+|++|.+ +++++++|++|.+ ++.++||| +++|+| |+++|||+||+||
T Consensus 233 -~kG~t~~~~a~~~~~~iv~ail~~~~-~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig 288 (326)
T PRK05442 233 -ARGASSAASAANAAIDHVRDWVLGTP-EGDWVSMGVPSDGSYGIPEGLIFGFPVTCE 288 (326)
T ss_pred -CcCCccHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEecCccCCcCCeEEEEEEEEc
Confidence 578999999999 5999999999853 46799999 578998 4899999999998
No 12
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.7e-59 Score=434.25 Aligned_cols=260 Identities=26% Similarity=0.360 Sum_probs=228.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEc
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP 103 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ 103 (300)
+.+||+|||| |+||+++++.|+.+++.+||+|+|+++ ++|+++||+|+... ...... .++|+ ++++|||+||++
T Consensus 2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvit 78 (312)
T cd05293 2 PRNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVT 78 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEEC
Confidence 4579999996 999999999999999999999999965 68999999999732 112222 24566 579999999999
Q ss_pred CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHH
Q 022263 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK 182 (300)
Q Consensus 104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~ 182 (300)
||.+++|||+|+|++..|+++++++++.|++++|++++|++|||+|.|+++ +++.+++|++|+||+ |.||++|++
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~----~~k~sg~p~~~viG~gt~Ld~~R~~ 154 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYV----AWKLSGLPKHRVIGSGCNLDSARFR 154 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHH----HHHHhCCCHHHEEecCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999965554 334445999999999 899999999
Q ss_pred HHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCC------------CCHHHHHHHHHHHhchhhhhhhhccCCCC
Q 022263 183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN------------LADEDIKALTKRTQDGGTEVVEAKAGKGS 250 (300)
Q Consensus 183 ~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~------------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~ 250 (300)
+++|+++++++++|+++||||| |++|||+||++++++. .+++++++|.++++++|++|++ +||+
T Consensus 155 ~~la~~l~v~~~~v~~~v~GeH-G~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~ 230 (312)
T cd05293 155 YLIAERLGVAPSSVHGWIIGEH-GDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LKGY 230 (312)
T ss_pred HHHHHHhCCChhhEEEEEeecC-CCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hcCC
Confidence 9999999999999999999999 6899999999987631 1234588999999999999998 5789
Q ss_pred CccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263 251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN 300 (300)
Q Consensus 251 t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~ 300 (300)
|+||+|.++++++++|++| ++.+++++ +++|+| ++++|||+||++|+
T Consensus 231 t~~~~a~a~~~ii~ail~d---~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~ 280 (312)
T cd05293 231 TSWAIGLSVADLVDAILRN---TGRVHSVSTLVKGLHGIEDEVFLSLPCILGE 280 (312)
T ss_pred chHHHHHHHHHHHHHHHcC---CCeEEEEEEEeCCccCCCCCeEEEEeEEEeC
Confidence 9999999999999999987 56789988 688888 47999999999985
No 13
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=6.4e-59 Score=436.71 Aligned_cols=258 Identities=24% Similarity=0.402 Sum_probs=229.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEcCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
+||+|||| |+||+++++.|+..++++||+|+|+++ ++|+++||+|+... ...+.. ++.|+ ++++|||+||++||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~dy-~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTDY-AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCCH-HHhCCCCEEEECCC
Confidence 69999996 999999999999999999999999965 58999999998632 123333 23455 67999999999999
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHH
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF 184 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~ 184 (300)
.+++||++|.|++..|++|+++++++|+++||++++|++|||+|++|+++ ++.+| ||++||||+ |.||++|++++
T Consensus 115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~r~~ 190 (350)
T PLN02602 115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA---WKLSG-FPANRVIGSGTNLDSSRFRFL 190 (350)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH---HHHhC-CCHHHEEeecchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999776653 55666 999999999 59999999999
Q ss_pred HHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC------------CCCHHHHHHHHHHHhchhhhhhhhccCCCCCc
Q 022263 185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAGKGSAT 252 (300)
Q Consensus 185 la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~------------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~ 252 (300)
+|+++++++++|+++||||| |+++||+||++++++ .+++++++++.++++++|++|++ +||+|+
T Consensus 191 lA~~l~v~~~~V~~~ViGeH-Gds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~KG~t~ 266 (350)
T PLN02602 191 IADHLDVNAQDVQAYIVGEH-GDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK---LKGYTS 266 (350)
T ss_pred HHHHhCCCccceeeeEEecC-CCceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh---cCCccH
Confidence 99999999999999999999 589999999998642 24456689999999999999998 578999
Q ss_pred cchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC---CcCEEEEeEEecC
Q 022263 253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT---ELPFFASKRAWKN 300 (300)
Q Consensus 253 ~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~---~~~~~S~Pv~lg~ 300 (300)
||+|.++++++++|++| ++.++||| +++|+|+ +++|||+||++|+
T Consensus 267 ~gia~a~a~ii~ail~d---~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~ 315 (350)
T PLN02602 267 WAIGYSVASLVRSLLRD---QRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGR 315 (350)
T ss_pred HHHHHHHHHHHHHHHhc---CCCeEEEEEecccccCCCCCCcEEEEEEEEeC
Confidence 99999999999999997 57899999 5788883 7899999999985
No 14
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=5.4e-59 Score=430.08 Aligned_cols=253 Identities=25% Similarity=0.403 Sum_probs=223.8
Q ss_pred EEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCC--cEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (300)
Q Consensus 33 IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~~~aDiVIi~ag~~~ 108 (300)
|||+ |+||+++++.|+..++++||+|+|+++ ++|+++||+|+.... .++.. ..+ +++++|||+||++||.|+
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGD-YSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCC-HHHHCCCCEEEECCCCCC
Confidence 6895 999999999999999999999999965 689999999987432 34433 234 478999999999999999
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHHHHH
Q 022263 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAG 187 (300)
Q Consensus 109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~la~ 187 (300)
+|||+|.|++..|++++++++++|++++|++++|++|||+|+||+++ ++.+ ++|++||||+ |.|||+|+++++|+
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~---~~~s-g~p~~~viG~gt~LDs~R~~~~la~ 152 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA---WKLS-GFPKNRVIGSGTVLDTARLRYLLAE 152 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH---HHHh-CCCHHHEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999665543 3444 5999999999 79999999999999
Q ss_pred HcCCCCCceEEEEEecCCCCceeeccCcCcCCC----CC-------CHHHHHHHHHHHhchhhhhhhhccCCCCCccchH
Q 022263 188 KANVNVAEVNVPVVGGHAGITILPLFSQATPKA----NL-------ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256 (300)
Q Consensus 188 ~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~~-------~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A 256 (300)
++++++++|+++||||| |++|||+||++++++ .+ +++++++|.++++++|++|++ +||+|+||+|
T Consensus 153 ~l~v~~~~V~~~v~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a 228 (299)
T TIGR01771 153 KLGVDPQSVHAYIIGEH-GDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIG 228 (299)
T ss_pred HhCcCcCeEEEEEEecC-CCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHH
Confidence 99999999999999999 689999999998754 11 133578999999999999998 5789999999
Q ss_pred HHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263 257 YAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN 300 (300)
Q Consensus 257 ~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~ 300 (300)
.|+++++++|++| ++.++||| +++|+|+ +++|||+||++|+
T Consensus 229 ~a~~~~i~ail~d---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~ 271 (299)
T TIGR01771 229 MAVARIVEAILHD---ENRVLPVSAYLDGEYGIKDVYIGVPAVLGR 271 (299)
T ss_pred HHHHHHHHHHHcC---CCcEEEEEEEecccCCCCCEEEEEEEEEeC
Confidence 9999999999997 57899998 7899984 6899999999985
No 15
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.7e-58 Score=429.26 Aligned_cols=261 Identities=30% Similarity=0.369 Sum_probs=226.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCC--CcEEEEecCCccccccCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDS 97 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~a 97 (300)
.||+||||+|+||+++++.|+++++++ +|+|+|+++ ++|+++||.|+.++ ...... .+.+++++||
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~---~~~~~~~~~a 77 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT---TDPEEAFKDV 77 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe---cChHHHhCCC
Confidence 489999977999999999999999988 599999975 58999999998632 122322 2345899999
Q ss_pred CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeh
Q 022263 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176 (300)
Q Consensus 98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~L 176 (300)
|+||++||.|++||++|+|++..|++|+++++++|++++ |++++|++|||+|+||++ +++.+|.+|++||||+|.|
T Consensus 78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~---~~k~sg~~p~~~vig~t~L 154 (323)
T cd00704 78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALI---ALKNAPNLPPKNFTALTRL 154 (323)
T ss_pred CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHH---HHHHcCCCCHHHEEEeeHH
Confidence 999999999999999999999999999999999999996 999999999999977665 3555653599999999999
Q ss_pred hHHHHHHHHHHHcCCCCCce-EEEEEecCCCCceeeccCcCcCCCC---------CCHHH-HHHHHHHHhchhhhhhhhc
Q 022263 177 DVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKAN---------LADED-IKALTKRTQDGGTEVVEAK 245 (300)
Q Consensus 177 ds~R~~~~la~~l~v~~~~V-~~~v~G~h~g~t~vp~~S~~~~~~~---------~~~~~-~~~i~~~v~~~g~~i~~~~ 245 (300)
||+|||++||++++++|++| +++||||| |++++|+||++++++. +++++ .++|.++++++|++|++
T Consensus 155 Ds~R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~-- 231 (323)
T cd00704 155 DHNRAKAQVARKLGVRVSDVKNVIIWGNH-SNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK-- 231 (323)
T ss_pred HHHHHHHHHHHHhCcCHHHceeeeEEecc-cCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh--
Confidence 99999999999999999999 56899999 5699999999987641 34442 68999999999999998
Q ss_pred cCCCCCccc-hHHHHHHHHHHHHccCCCCCCceeee-eeeCCC---CCcCEEEEeEEecC
Q 022263 246 AGKGSATLS-MAYAGAIFADACLKGLNGVPDVVECS-FVQSTV---TELPFFASKRAWKN 300 (300)
Q Consensus 246 ~gkg~t~~~-~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~---~~~~~~S~Pv~lg~ 300 (300)
+||+|+|+ +|.|+++++++|++|.++. .++||| +++|+| |+++|||+||+||+
T Consensus 232 -~kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~ 289 (323)
T cd00704 232 -KRGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKG 289 (323)
T ss_pred -ccCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcC
Confidence 46889997 6999999999999985433 799998 789988 37899999999995
No 16
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=3.3e-58 Score=440.80 Aligned_cols=264 Identities=27% Similarity=0.272 Sum_probs=228.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhC-------CCCCEEEEEecCC--cccHHHHhccccCCC--cEEEEecCCccccc
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMKLN-------PLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQA 93 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~-------~~~~el~L~D~~~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a 93 (300)
.+++.||+||||+|+||+++++.|+.+ ++++||+|+|+++ ++|++|||+|+.++. .+... +.+ +++
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~ 173 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEV 173 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHH
Confidence 356789999997799999999999998 6667999999965 689999999987432 33322 334 589
Q ss_pred cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHh-hCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-YCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~-~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG 172 (300)
++|||+||++||.|++|||+|.|++..|++|+++++++|++ ++|++++|++|||+|+||+++ ++.+| ++++|+||
T Consensus 174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~---~k~sg-~~~~rViG 249 (444)
T PLN00112 174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC---LKNAP-NIPAKNFH 249 (444)
T ss_pred hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH---HHHcC-CCCcceEE
Confidence 99999999999999999999999999999999999999999 599999999999999877663 45555 89999999
Q ss_pred e-eehhHHHHHHHHHHHcCCCCCce-EEEEEecCCCCceeeccCcCcCCC-C----CCH-HH-HHHHHHHHhchhhhhhh
Q 022263 173 V-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-N----LAD-ED-IKALTKRTQDGGTEVVE 243 (300)
Q Consensus 173 ~-t~Lds~R~~~~la~~l~v~~~~V-~~~v~G~h~g~t~vp~~S~~~~~~-~----~~~-~~-~~~i~~~v~~~g~~i~~ 243 (300)
+ |.|||+||+++||+++++++++| +++||||| |++|||+||++++++ . +++ ++ +++|.++++++|++|++
T Consensus 250 tgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeH-Gdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~ 328 (444)
T PLN00112 250 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH-STTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK 328 (444)
T ss_pred eeccHHHHHHHHHHHHHhCcCHHHcccceEEecC-CCceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence 9 79999999999999999999999 56999999 579999999999864 1 222 22 68999999999999998
Q ss_pred hccCCCCCcc-chHHHHHHHHHHHHccCCCCCCceeee-eeeCC-C--CCcCEEEEeEEecC
Q 022263 244 AKAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECS-FVQST-V--TELPFFASKRAWKN 300 (300)
Q Consensus 244 ~~~gkg~t~~-~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~-~--~~~~~~S~Pv~lg~ 300 (300)
+||+|+| ++|.++++++++|+++. +++.|+||| +++|+ | ++++|||+||++|+
T Consensus 329 ---~kG~t~~~s~a~ai~~~I~ail~~~-d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~ 386 (444)
T PLN00112 329 ---KWGRSSAASTAVSIADAIKSLVTPT-PEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKG 386 (444)
T ss_pred ---ccCchhHHHHHHHHHHHHHHHHcCC-CCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeC
Confidence 4677877 99999999999999543 378999999 67884 8 48999999999984
No 17
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-57 Score=423.49 Aligned_cols=260 Identities=27% Similarity=0.415 Sum_probs=230.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEE
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVII 102 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi 102 (300)
+.++||+|||| |+||+++++.|+..++++||+|+|+++ ++|+++||+|+... ..+.... +++ ++++|||+||+
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~~-~~~~~adivIi 79 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GDY-SDCKDADLVVI 79 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CCH-HHhCCCCEEEE
Confidence 34579999996 999999999999999999999999965 58999999998632 2344432 344 78999999999
Q ss_pred cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA 181 (300)
Q Consensus 103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~ 181 (300)
+||.|++||++|.|++..|+++++++++++++++|+++++++|||+|+|++++ ++.++ +|++||||+ |.|||+|+
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~---~k~sg-~p~~~viG~gt~LDs~R~ 155 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT---WKLSG-FPKERVIGSGTSLDSARF 155 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH---HHHhC-CCHHHEeecCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999766653 45555 999999999 69999999
Q ss_pred HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----------CCCHHHHHHHHHHHhchhhhhhhhccCCCC
Q 022263 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVVEAKAGKGS 250 (300)
Q Consensus 182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~ 250 (300)
++++|+++++++++|+++||||| |++++|+||++++++ .+++++++++.++++++|++|++ +||+
T Consensus 156 ~~~la~~l~v~~~~V~~~viGeH-G~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg~ 231 (315)
T PRK00066 156 RYMLSEKLDVDPRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKGA 231 (315)
T ss_pred HHHHHHHhCCCcccEEEEEEecC-CCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCCe
Confidence 99999999999999999999999 689999999998753 13445688999999999999998 5789
Q ss_pred CccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263 251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN 300 (300)
Q Consensus 251 t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~ 300 (300)
|+||+|.++++++++|+++ ++.++|+| +++|+| ++++|||+||++|+
T Consensus 232 t~~~~a~~~~~i~~ail~~---~~~v~~~sv~~~g~yg~~~v~~S~Pv~ig~ 280 (315)
T PRK00066 232 TYYGIAMALARITKAILNN---ENAVLPVSAYLEGQYGEEDVYIGVPAVVNR 280 (315)
T ss_pred ehHHHHHHHHHHHHHHHcC---CCeEEEEEEEeccccCCCCEEEEeEEEEeC
Confidence 9999999999999999996 67899999 688888 57999999999985
No 18
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=6.9e-58 Score=432.71 Aligned_cols=265 Identities=28% Similarity=0.289 Sum_probs=226.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEE--ecCC--cccHHHHhccccCC--CcEEEEecCCcccc
Q 022263 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALY--DIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQ 92 (300)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~--D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~ 92 (300)
...+|.||+||||+|+||+++|+.|+.+++++ +|+|+ |+++ ++|+++||+|+.++ ..+... +.+ ++
T Consensus 40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~ 116 (387)
T TIGR01757 40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YE 116 (387)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HH
Confidence 34567899999977999999999999999998 57777 5543 68999999998743 233322 234 58
Q ss_pred ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022263 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF 171 (300)
Q Consensus 93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kvi 171 (300)
+++|||+||++||.|++||++|.|++..|++|++++++.|++++ |++++|++|||+|+||+++ ++.++ +||+|+|
T Consensus 117 ~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~---~k~sg-~~~~rvi 192 (387)
T TIGR01757 117 VFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA---MKNAP-NIPRKNF 192 (387)
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH---HHHcC-CCcccEE
Confidence 99999999999999999999999999999999999999999987 9999999999999877663 45555 8999999
Q ss_pred Ee-eehhHHHHHHHHHHHcCCCCCce-EEEEEecCCCCceeeccCcCcCCC-C----CCH-H-HHHHHHHHHhchhhhhh
Q 022263 172 GV-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-N----LAD-E-DIKALTKRTQDGGTEVV 242 (300)
Q Consensus 172 G~-t~Lds~R~~~~la~~l~v~~~~V-~~~v~G~h~g~t~vp~~S~~~~~~-~----~~~-~-~~~~i~~~v~~~g~~i~ 242 (300)
|+ |.|||+||+++||+++++++++| +++||||| |++|||+||++++++ . +++ + .+++|.++++++|++|+
T Consensus 193 G~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeH-Gds~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi 271 (387)
T TIGR01757 193 HALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNH-STTQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALI 271 (387)
T ss_pred EecchhHHHHHHHHHHHHHCcChhHcceeEEEecC-CCcEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHH
Confidence 99 89999999999999999999999 59999999 589999999998764 1 222 2 26899999999999999
Q ss_pred hhccCCCCCcc-chHHHHHHHHHHHHccCCCCCCceeee-eeeCC-C--CCcCEEEEeEEecC
Q 022263 243 EAKAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECS-FVQST-V--TELPFFASKRAWKN 300 (300)
Q Consensus 243 ~~~~gkg~t~~-~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~-~--~~~~~~S~Pv~lg~ 300 (300)
+ +||+|+| ++|.++++++++|+++. +++.++|+| +++|+ | ++++|||+||++|+
T Consensus 272 ~---~KG~t~~~s~a~ai~~~i~ai~~g~-d~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~ 330 (387)
T TIGR01757 272 K---KWGRSSAASTAVSIADAIKSLVVPT-PEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKG 330 (387)
T ss_pred h---ccCchhHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEEeCCcccCCCCCEEEEEEEEEeC
Confidence 8 4677777 99999999999999543 267899999 57885 8 48999999999984
No 19
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.4e-57 Score=422.71 Aligned_cols=263 Identities=26% Similarity=0.324 Sum_probs=229.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecC--C--cccHHHHhccccCC--CcEEEEecCCccccccC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA--N--TPGVAADVGHINTR--SEVAGYMGNDQLGQALE 95 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~--~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~ 95 (300)
+|+||+||||+|+||+++++.|+++++++ ||+|+|++ . ++|+++||+|+.++ ..++.. +.+ +++++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~ 77 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK 77 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence 46899999977999999999999999999 99999994 3 68999999998743 234433 234 58999
Q ss_pred CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee
Q 022263 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174 (300)
Q Consensus 96 ~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t 174 (300)
|||+||++||.|++||++|+|++..|++|+++++++|++++ |++++|++|||+|+|||++ ++.+|++|+++|+|+|
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~sg~~p~~~ViG~t 154 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA---MKNAPDIPPDNFTAMT 154 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH---HHHcCCCChHheEEeh
Confidence 99999999999999999999999999999999999999999 5999999999999877663 4566469999999999
Q ss_pred ehhHHHHHHHHHHHcCCCCCceEE-EEEecCCCCceeeccCcCcCCC-C----CCHH--HHHHHHHHHhchhhhhhhhcc
Q 022263 175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADE--DIKALTKRTQDGGTEVVEAKA 246 (300)
Q Consensus 175 ~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h~g~t~vp~~S~~~~~~-~----~~~~--~~~~i~~~v~~~g~~i~~~~~ 246 (300)
.||++||++++|+++++++++|++ +||||| |++++|+||++++.+ . +.+. ++++|.++++++|++|++
T Consensus 155 ~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~--- 230 (322)
T cd01338 155 RLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH-SPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK--- 230 (322)
T ss_pred HHHHHHHHHHHHHHhCcChhHeEEEEEEeCC-cccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh---
Confidence 999999999999999999999998 569999 579999999998763 1 3333 268999999999999998
Q ss_pred CCCCCccchH-HHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263 247 GKGSATLSMA-YAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN 300 (300)
Q Consensus 247 gkg~t~~~~A-~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~ 300 (300)
+||+|+|++| .|+++++++|++|.+ .+.++||| +++|+| |+++|||+||++|+
T Consensus 231 ~kG~t~~~~~a~a~~~iv~ail~~~~-~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~ 287 (322)
T cd01338 231 ARGASSAASAANAAIDHMRDWVLGTP-EGDWFSMAVPSDGSYGIPEGLIFSFPVRSKG 287 (322)
T ss_pred CcCCccHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEccCccCCCCCeEEEEEEEEeC
Confidence 5789999999 599999999999854 24799999 578898 48999999999985
No 20
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=2e-56 Score=415.02 Aligned_cols=257 Identities=28% Similarity=0.400 Sum_probs=225.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEEcC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
+||+|||+ |.+|+++++.|+..++..+|+|+|+++ +++.++||+|+... ....... .++ +++++||+||+++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~~-~~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GDY-SDCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CCH-HHhCCCCEEEEcc
Confidence 38999995 999999999999999888999999965 57889999998642 2333332 344 6799999999999
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHH
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT 183 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~ 183 (300)
|.|++|||+|.|++.+|++++++++++|++++|++++|++|||+|+||++ +++.+++|++||||+ |.||++|+++
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~----~~~~~g~p~~~v~g~gt~LDs~R~~~ 152 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYV----VQKLSGLPKNRVIGTGTSLDTARLRR 152 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHH----HHHHhCcCHHHEeeccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999965554 334455999999999 6999999999
Q ss_pred HHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhhccCCCCCcc
Q 022263 184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKGSATL 253 (300)
Q Consensus 184 ~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~ 253 (300)
++|+++++++++|+++||||| |++++|+||++++++ .+.+++++++.++++++|++|++ +||+|+|
T Consensus 153 ~la~~l~v~~~~v~~~V~G~H-g~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~ 228 (306)
T cd05291 153 ALAEKLNVDPRSVHAYVLGEH-GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYY 228 (306)
T ss_pred HHHHHHCCCcccceEEEEecC-CCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHH
Confidence 999999999999999999999 589999999998753 13355688999999999999998 5789999
Q ss_pred chHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263 254 SMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN 300 (300)
Q Consensus 254 ~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~ 300 (300)
++|.|+++++++|+++ ++.++||| +++|+| .+++|||+||++|+
T Consensus 229 ~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~v~~s~P~~ig~ 274 (306)
T cd05291 229 GIATALARIVKAILND---ENAILPVSAYLDGEYGEKDVYIGVPAIIGR 274 (306)
T ss_pred HHHHHHHHHHHHHHcC---CCEEEEEEEEeccccCCCCEEEEEEEEEeC
Confidence 9999999999999997 67899999 688888 57899999999985
No 21
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-55 Score=410.02 Aligned_cols=262 Identities=33% Similarity=0.551 Sum_probs=229.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCC--cEEEEecCCccccccCCCCEEE
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVI 101 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~~~aDiVI 101 (300)
.+.+||+|||| |+||+++++.++..++ .+|+|+|+++ ++++++|+.|..... ..+. .+++|+ ++++|||+||
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i-~~~~d~-~~l~~ADiVV 78 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI-LGTNNY-EDIKDSDVVV 78 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEE-EeCCCH-HHhCCCCEEE
Confidence 35579999996 9999999999999887 5899999976 578899999985322 2232 234576 4899999999
Q ss_pred EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ehhHHH
Q 022263 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVR 180 (300)
Q Consensus 102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~Lds~R 180 (300)
+++|.++++|++|.|++..|.++++++++.|+++||++|+|++|||+|.++++ +++.+++|++||+|+| .||++|
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~----~~~~s~~p~~rviG~gt~lds~R 154 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKV----FQEKSGIPSNKICGMAGVLDSSR 154 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHH----HHHhhCCCcccEEEecchHHHHH
Confidence 99999999999999999999999999999999999999999999999965543 3344459999999996 899999
Q ss_pred HHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhhccCCCC
Q 022263 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKGS 250 (300)
Q Consensus 181 ~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~ 250 (300)
+++++|+++++++++|+++|+||| |+++||+||++++++ .+++++++++.++++++|++|++.+ |||+
T Consensus 155 ~~~~la~~l~v~~~~v~~~viGeH-g~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~ 232 (319)
T PTZ00117 155 FRCNLAEKLGVSPGDVSAVVIGGH-GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGS 232 (319)
T ss_pred HHHHHHHHhCCCcccceEEEeecC-CCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCC
Confidence 999999999999999999999999 689999999998753 1455668899999999999999976 7899
Q ss_pred CccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263 251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN 300 (300)
Q Consensus 251 t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~ 300 (300)
|+||+|.++++++++|++| ++.++|+| +++|+|+ +++|||+||+||+
T Consensus 233 t~~~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~ 281 (319)
T PTZ00117 233 AFFAPAAAIVAMIEAYLKD---EKRVLVCSVYLNGQYNCKNLFVGVPVVIGG 281 (319)
T ss_pred hHHHHHHHHHHHHHHHhcC---CCeEEEEEEEeccccCCCCeEEEEEEEEeC
Confidence 9999999999999999997 57899999 7899984 5899999999985
No 22
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=9.3e-56 Score=409.33 Aligned_cols=256 Identities=29% Similarity=0.416 Sum_probs=225.5
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
|+|||+ |.||+++++.|+..++++||+|+|+++ .+|+++||+|...+ ...+... ++|+ +++++||+||+++|.|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~~-~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGDY-ADAADADIVVITAGAP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCCH-HHhCCCCEEEEcCCCC
Confidence 689996 999999999999999999999999965 58999999998754 2233332 3454 7899999999999999
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHHHH
Q 022263 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYA 186 (300)
Q Consensus 108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~la 186 (300)
++|||+|.|++.+|++++++++++|+++||++++|++|||+|.++++ +++.+| +|++||+|+ |.|||+|+++++|
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~---~~~~sg-~~~~kviG~gt~lDs~r~~~~la 153 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYV---AQKLSG-LPKNRVIGSGTLLDSARFRSLLA 153 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHH---HHHHhC-cCHHHEEecCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999965554 244555 999999999 6999999999999
Q ss_pred HHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-C------CCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHH
Q 022263 187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAG 259 (300)
Q Consensus 187 ~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-~------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~ 259 (300)
+++++++++|+++|+||| |+++||+||++++++ + .+++.++++.++++++|++|++ +||+|+||+|.++
T Consensus 154 ~~l~v~~~~v~~~viGeH-g~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~ 229 (300)
T cd00300 154 EKLDVDPQSVHAYVLGEH-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAI 229 (300)
T ss_pred HHhCCCcccEEEEEEecc-CCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHH
Confidence 999999999999999999 689999999998764 1 1234578999999999999998 5789999999999
Q ss_pred HHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263 260 AIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN 300 (300)
Q Consensus 260 ~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~ 300 (300)
++++++|+++ ++.++||| +++|+| .+++|||+||+||+
T Consensus 230 ~~~~~ai~~~---~~~v~~~s~~~~g~yg~~~~~~s~Pv~ig~ 269 (300)
T cd00300 230 ADIVKSILLD---ERRVLPVSAVQEGQYGIEDVALSVPAVVGR 269 (300)
T ss_pred HHHHHHHHcC---CCeEEEEEEEecCccCCCCEEEEEEEEEeC
Confidence 9999999997 57899999 578888 57999999999985
No 23
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-55 Score=406.62 Aligned_cols=261 Identities=33% Similarity=0.571 Sum_probs=228.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC--CCcEEEEecCCccccccCCCCEEEE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII 102 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi 102 (300)
+.+||+|||| |+||+++++.++..++. +|+|+|+++ ++++++|+.|... ....+.. .++|+ ++++|||+||+
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~-~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~ 80 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNLG-DVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV 80 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence 3469999995 99999999999998884 699999976 4678999999753 1223332 34576 68999999999
Q ss_pred cCCCCCCCCC-----cchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eh
Q 022263 103 PAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TL 176 (300)
Q Consensus 103 ~ag~~~~~g~-----~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~L 176 (300)
++|.+++||+ +|.+++..|.+++++++++|+++||++++|++|||+|.+++. +.+.+++|++||+|+| .|
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~----~~~~sg~p~~rviGlgt~l 156 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKL----LQEHSGLPKNKVCGMAGVL 156 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH----HHHhcCCChhhEEEecCcc
Confidence 9999999999 999999999999999999999999999999999999965544 3344459999999996 89
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhhcc
Q 022263 177 DVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKA 246 (300)
Q Consensus 177 ds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~~~ 246 (300)
|++|+++++|+++++++++|+++|+||| |+++||+||++++++ .++++++++|.++++++|++|++++
T Consensus 157 ds~R~~~~la~~l~v~~~~v~~~viGeH-g~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~- 234 (321)
T PTZ00082 157 DSSRLRTYIAEKLGVNPRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL- 234 (321)
T ss_pred cHHHHHHHHHHHhCCCcccceeeEEecC-CCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence 9999999999999999999999999999 689999999998753 1456668999999999999999986
Q ss_pred CCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263 247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN 300 (300)
Q Consensus 247 gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~ 300 (300)
|||+|+||+|.++++++++|++| ++.++||| +++|+|+ +++|||.||++|+
T Consensus 235 gkg~t~~~ia~a~~~i~~ail~d---~~~v~~vs~~~~g~yg~~~v~~s~P~~ig~ 287 (321)
T PTZ00082 235 GTGSAYFAPAAAAIEMAEAYLKD---KKRVLPCSAYLEGQYGHKDIYMGTPAVIGA 287 (321)
T ss_pred CCCccHHHHHHHHHHHHHHHHcC---CCcEEEEEEEecccCCCCCeEEEEEEEEeC
Confidence 79999999999999999999997 67899999 7899995 6899999999985
No 24
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=4.2e-55 Score=405.52 Aligned_cols=257 Identities=32% Similarity=0.554 Sum_probs=226.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC----CcEEEEecCCccccccCCCCEEEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR----SEVAGYMGNDQLGQALEDSDVVII 102 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~----~~v~~~~~t~d~~~a~~~aDiVIi 102 (300)
|||+|||+ |.||+.+|+.++..++. +++|+|+.+ .+++++|+.|.... ..++ .++|+ +++++||+||+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~-~~~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNY-ADTANSDIVVI 75 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCH-HHhCCCCEEEE
Confidence 69999996 99999999999998887 799999965 36778888876432 1233 24576 45999999999
Q ss_pred cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ehhHHHH
Q 022263 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRA 181 (300)
Q Consensus 103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~Lds~R~ 181 (300)
++|.|+++|++|+|++..|.+++++++++|.+++|++++|++|||+|.|++++ ++.+| +|++||||+| .|||+|+
T Consensus 76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~---~~~sg-~~~~rviG~g~~lds~R~ 151 (305)
T TIGR01763 76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA---WQKSG-FPKERVIGQAGVLDSARF 151 (305)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHEEEeccchHHHHH
Confidence 99999999999999999999999999999999999999999999999766553 45555 9999999995 8999999
Q ss_pred HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-C----CCHHHHHHHHHHHhchhhhhhhhccCCCCCccchH
Q 022263 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256 (300)
Q Consensus 182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-~----~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A 256 (300)
++++|+++++++++|+++||||| |+++||+||++++++ . ++++++++|.++++++|++|++++ |||+|+||+|
T Consensus 152 ~~~la~~l~v~~~~v~~~v~GeH-g~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a 229 (305)
T TIGR01763 152 RTFIAMELGVSVQDVTACVLGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA 229 (305)
T ss_pred HHHHHHHhCcCHHHeeeeEEecC-CCcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence 99999999999999999999999 689999999998764 1 345558999999999999999986 7999999999
Q ss_pred HHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263 257 YAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN 300 (300)
Q Consensus 257 ~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~ 300 (300)
.++++++++|++| ++.++|+| +++++|+ +++|||+||++|+
T Consensus 230 ~~~~~i~~ai~~~---~~~v~~~s~~~~~~yg~~~v~~s~P~~ig~ 272 (305)
T TIGR01763 230 ASVVEMVEAILKD---RKRVLPCAAYLDGQYGIDGIYVGVPVILGK 272 (305)
T ss_pred HHHHHHHHHHhCC---CCeEEEEEEEecccCCCCceEEEEEEEEeC
Confidence 9999999999997 57899999 6899994 7999999999985
No 25
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=5.9e-55 Score=406.96 Aligned_cols=262 Identities=27% Similarity=0.306 Sum_probs=222.7
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCCCcEEEEecCCccccccCCCCEE
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV 100 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiV 100 (300)
||+||||+|+||+++++.|..+++++ +|+|+|+++ ++++++||.|+..+...... .+++.+++++|||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~-~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVV-PTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCcee-ccCChHHHhCCCCEE
Confidence 69999977999999999999988885 799999943 57999999999743221112 233445899999999
Q ss_pred EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhH
Q 022263 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV 178 (300)
Q Consensus 101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds 178 (300)
|++||.|+++|++|.+++..|++|+++++++|++++ |++++|++|||+|+||+++ ++.++ ++|+++||+ |.|||
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~~~sg-~~~~~vig~gt~LDs 155 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL---SNYAP-SIPPKNFSALTRLDH 155 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCcceEEEeeehHH
Confidence 999999999999999999999999999999999996 9999999999999776653 45555 666679999 79999
Q ss_pred HHHHHHHHHHcCCCCCceE-EEEEecCCCCceeeccCcCcCC-C----C----CCHH-H-HHHHHHHHhchhhhhhhhcc
Q 022263 179 VRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPK-A----N----LADE-D-IKALTKRTQDGGTEVVEAKA 246 (300)
Q Consensus 179 ~R~~~~la~~l~v~~~~V~-~~v~G~h~g~t~vp~~S~~~~~-~----~----~~~~-~-~~~i~~~v~~~g~~i~~~~~ 246 (300)
+||+++||++++++|++|+ ++||||| |++|||+||+++++ + . ++++ + +++|.++++++|++|++.|
T Consensus 156 ~R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k- 233 (324)
T TIGR01758 156 NRALAQVAERAGVPVSDVKNVIIWGNH-SSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR- 233 (324)
T ss_pred HHHHHHHHHHhCCChhhceEeEEEECC-CCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence 9999999999999999996 6999999 57999999999987 4 2 2222 2 5789999999999999963
Q ss_pred CCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCC-C--CCcCEEEEeEEecC
Q 022263 247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQST-V--TELPFFASKRAWKN 300 (300)
Q Consensus 247 gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~-~--~~~~~~S~Pv~lg~ 300 (300)
+|+|+||+|.++++++++|+.+. +++.++||| +++|+ | ++++|||+||++|+
T Consensus 234 -~~~t~~~ia~~~~~i~~ai~~~~-~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~ 289 (324)
T TIGR01758 234 -KLSSALSAAKAAVDQMHDWVLGT-PEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKN 289 (324)
T ss_pred -CCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEeecCCcccCCCCceEEEEEEEEcC
Confidence 46899999999999999999443 367899999 67888 8 47999999999984
No 26
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.7e-55 Score=407.59 Aligned_cols=263 Identities=29% Similarity=0.342 Sum_probs=225.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCCC--cEEEEecCCccccccC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRS--EVAGYMGNDQLGQALE 95 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~~ 95 (300)
+|.||+||||+|+||+++++.|+.+++++ ||+|+|+++ ++++++|+.|+..+. .+.. +.+++++++
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~ 77 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK 77 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence 46899999988999999999999988875 999999943 578889999986331 2322 346678999
Q ss_pred CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-
Q 022263 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV- 173 (300)
Q Consensus 96 ~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~- 173 (300)
|||+||++||.+++++++|.+++..|++|++++++.|++++ |++++|++|||+|.|++++ ++.++++|+++ ||+
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~~~~~~~~~-ig~g 153 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL---LKYAPSIPKEN-FTAL 153 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH---HHHcCCCCHHH-EEee
Confidence 99999999999999999999999999999999999999997 7999999999999776653 44546688888 777
Q ss_pred eehhHHHHHHHHHHHcCCCCCceEE-EEEecCCCCceeeccCcCcCC----C-C----CCHH-H-HHHHHHHHhchhhhh
Q 022263 174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPK----A-N----LADE-D-IKALTKRTQDGGTEV 241 (300)
Q Consensus 174 t~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h~g~t~vp~~S~~~~~----~-~----~~~~-~-~~~i~~~v~~~g~~i 241 (300)
|.||++|+++++|+++++++++|+. +||||| |++|||+||+++++ + . ++++ + +++|.++++++|++|
T Consensus 154 t~LDs~R~r~~la~~l~v~~~~v~~~~V~GeH-G~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~I 232 (325)
T cd01336 154 TRLDHNRAKSQIALKLGVPVSDVKNVIIWGNH-SSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAV 232 (325)
T ss_pred ehHHHHHHHHHHHHHhCcChhhceEeEEEEcC-CCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHH
Confidence 8999999999999999999999975 599999 56999999999886 3 1 2222 2 689999999999999
Q ss_pred hhhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263 242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN 300 (300)
Q Consensus 242 ~~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~ 300 (300)
++++ ||+|+||+|.++++++++|++|.+ ++.++||| +++|+| ++++|||+||+||+
T Consensus 233 i~~~--~g~t~~~~a~~~~~i~~ail~~~~-~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~ 291 (325)
T cd01336 233 IKAR--KLSSAMSAAKAICDHVHDWWFGTP-EGEFVSMGVYSDGSYGVPEGLIFSFPVTCKN 291 (325)
T ss_pred HHcc--ccchHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEecCCCcCCCCceEEEEEEEEeC
Confidence 9963 689999999999999999999742 46899999 579998 47999999999985
No 27
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.2e-55 Score=418.57 Aligned_cols=261 Identities=18% Similarity=0.140 Sum_probs=226.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecC--C--cccHHHHhccccCCC--cEEEEecCCcccccc
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA--N--TPGVAADVGHINTRS--EVAGYMGNDQLGQAL 94 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~--~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~ 94 (300)
.+|.+|+|+||+|++|+++.+.++.+++++ .|+|+|+. + ++|++|||+|+.++. .+... ++.+++|
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~---~~~~ea~ 197 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT---TDLDVAF 197 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE---ECCHHHh
Confidence 457899999999999999999999987764 69999994 3 589999999997542 24443 2346899
Q ss_pred CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC--CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p--~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG 172 (300)
+|||+||+++|.|++|||+|.|++..|.+|+++++++|++++| ++++|++|||+|+||+++ ++.++++|++||+|
T Consensus 198 ~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~---~k~apgiP~~rVig 274 (452)
T cd05295 198 KDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL---IKYAPSIPRKNIIA 274 (452)
T ss_pred CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEE
Confidence 9999999999999999999999999999999999999999999 999999999999888764 56674699999999
Q ss_pred eeehhHHHHHHHHHHHcCCCCCce-EEEEEecCCCCceeeccCcCcCCC-------------C----C-CHHH-HHHHHH
Q 022263 173 VTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-------------N----L-ADED-IKALTK 232 (300)
Q Consensus 173 ~t~Lds~R~~~~la~~l~v~~~~V-~~~v~G~h~g~t~vp~~S~~~~~~-------------~----~-~~~~-~~~i~~ 232 (300)
++.||++|++++||+++++++++| +++||||| |+||||+||++++++ . + ++++ .+++.+
T Consensus 275 ~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeH-G~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~ 353 (452)
T cd05295 275 VARLQENRAKALLARKLNVNSAGIKDVIVWGNI-GGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVA 353 (452)
T ss_pred ecchHHHHHHHHHHHHhCcCHHHceeeEEEEcc-CCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHH
Confidence 988999999999999999999999 67999999 579999999998753 1 1 2232 367889
Q ss_pred HHhchhhhhhhhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263 233 RTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN 300 (300)
Q Consensus 233 ~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~ 300 (300)
.++++++ + +||+|+||+|.|+++++++|++|.+ ++.++||| +++|+| |+++|||+||++|+
T Consensus 354 ~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~-~~~ilsvsv~sdG~YGip~gv~~S~Pviig~ 417 (452)
T cd05295 354 TLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSP-PGEIFSLGVISEGWYGIPEGIVFSMPVKFQN 417 (452)
T ss_pred HHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeeccccCCcCCEEEEEEEEEeC
Confidence 9999998 2 5799999999999999999999864 35799999 679999 58999999999985
No 28
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8e-54 Score=397.77 Aligned_cols=257 Identities=28% Similarity=0.410 Sum_probs=227.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEcCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
|||+|||+ |.||+++++.|+..++..+++|+|+++ .+++++|+.|.... .....+ ++|+ +++++||+||++++
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence 69999996 999999999999999888999999976 57899999998532 223333 3455 78999999999999
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHH
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF 184 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~ 184 (300)
.+++++++|.|++..|+++++++++.|++++|+++++++|||+|.|++++ ++.+| ||++||||+ |.|||+|++++
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~---~~~sg-~p~~~viG~gt~LDs~R~~~~ 152 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA---YKLSG-LPPNRVIGSGTVLDTARFRYL 152 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHeecccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999766653 34454 999999999 79999999999
Q ss_pred HHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC------------CCCHHHHHHHHHHHhchhhhhhhhccCCCCCc
Q 022263 185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAGKGSAT 252 (300)
Q Consensus 185 la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~------------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~ 252 (300)
+|+++++++++|+++||||| |+++||+||++++++ .++++++++|.++++++|++|++ +||+|+
T Consensus 153 la~~~~v~~~~v~~~viGeH-g~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~ 228 (308)
T cd05292 153 LGEHLGVDPRSVHAYIIGEH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATY 228 (308)
T ss_pred HHHHhCCCccceeceeeccC-CCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccH
Confidence 99999999999999999999 689999999998653 23345588999999999999998 468999
Q ss_pred cchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263 253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN 300 (300)
Q Consensus 253 ~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~ 300 (300)
||+|.++++++++|++| ++.++||| +++|+|+ +++|||.||+||+
T Consensus 229 ~~~a~a~~~i~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~ 275 (308)
T cd05292 229 YAIGLALARIVEAILRD---ENSVLTVSSLLDGQYGIKDVALSLPCIVGR 275 (308)
T ss_pred HHHHHHHHHHHHHHHcC---CCcEEEEEEEEcccCCCCCEEEEEEEEEeC
Confidence 99999999999999997 67899998 6899984 6899999999985
No 29
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=9.3e-52 Score=382.80 Aligned_cols=257 Identities=35% Similarity=0.579 Sum_probs=224.1
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
|+|||| |+||+.+++.++..++. +|+|+|+++ ++++++|+.|.... ...+.. .++|+ ++++|||+||+++|.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d~-~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTNDY-EDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCCH-HHhCCCCEEEEecCC
Confidence 689996 99999999999998888 999999976 46777888886422 122322 24565 679999999999999
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ehhHHHHHHHH
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFY 185 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~Lds~R~~~~l 185 (300)
|+++|++|.+++.+|++++++++++|++++|++++|++|||+|.+++++ ++.+ ++||+||+|+| .||++|+++++
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~---~~~s-~~~~~rviGlgt~lds~r~~~~l 152 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA---YKAS-GFPRNRVIGMAGVLDSARFRYFI 152 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHh-CCCHHHEEEecchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999655543 3444 59999999996 89999999999
Q ss_pred HHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-C----CCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHH
Q 022263 186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 260 (300)
Q Consensus 186 a~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-~----~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~ 260 (300)
|++|++++++|+++|+||| |++++|+||++++++ . +++++++++.++++++|++|++.| |||+|+||+|.+++
T Consensus 153 a~~l~v~~~~v~~~v~G~h-g~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~ 230 (300)
T cd01339 153 AEELGVSVKDVQAMVLGGH-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA 230 (300)
T ss_pred HHHhCCCccceEEEEEeCC-CCcceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence 9999999999999999999 689999999998764 1 344558999999999999999986 78999999999999
Q ss_pred HHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263 261 IFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN 300 (300)
Q Consensus 261 ~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~ 300 (300)
+++++|++| ++.++|+| +++|+|+ +++|||+||++|+
T Consensus 231 ~i~~ail~~---~~~i~~~s~~~~g~yg~~~~~~s~P~~ig~ 269 (300)
T cd01339 231 EMVEAILKD---KKRVLPCSAYLEGEYGIKDIFVGVPVVLGK 269 (300)
T ss_pred HHHHHHHcC---CCcEEEEEEEeccccCCCCeEEEEEEEEeC
Confidence 999999997 57899999 6899983 5899999999985
No 30
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=7.5e-52 Score=382.89 Aligned_cols=234 Identities=24% Similarity=0.290 Sum_probs=202.4
Q ss_pred EEEEEecCC----cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHH
Q 022263 56 RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLC 129 (300)
Q Consensus 56 el~L~D~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~ 129 (300)
.|+|+|+++ ++|+++||.|+..+ ..+.. +++.+++++|||+||++||.|++||++|.|++..|++|+++++
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~ 91 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA 91 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 799999955 58999999998733 12321 3454589999999999999999999999999999999999999
Q ss_pred HHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHHHHHHcCCCCCce-EEEEEecCCC
Q 022263 130 SAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAG 206 (300)
Q Consensus 130 ~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~la~~l~v~~~~V-~~~v~G~h~g 206 (300)
++|+++ +|++++|++|||+|+|||++ ++.++ +|++|+||+ |.|||+||+++||+++++++++| ++|||||| |
T Consensus 92 ~~i~~~~~p~aivivvsNPvDv~t~~~---~~~sg-~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeH-G 166 (309)
T PLN00135 92 SALEKHAAPDCKVLVVANPANTNALIL---KEFAP-SIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNH-S 166 (309)
T ss_pred HHHHHhcCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcC-C
Confidence 999996 89999999999999776653 45555 999999999 79999999999999999999999 79999999 5
Q ss_pred CceeeccCcCcC----CC-C----CCHHH--HHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHHHccCCCCCC
Q 022263 207 ITILPLFSQATP----KA-N----LADED--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPD 275 (300)
Q Consensus 207 ~t~vp~~S~~~~----~~-~----~~~~~--~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~ 275 (300)
++|||+||++++ ++ . +.+++ .++|.++++++|++|++++ ||+|+||+|.|+++++++|++++ +++.
T Consensus 167 ~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~-~~~~ 243 (309)
T PLN00135 167 STQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGT-PEGT 243 (309)
T ss_pred CceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCC-cCCe
Confidence 699999999998 43 1 22332 6899999999999999963 78999999999999999999954 2578
Q ss_pred ceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263 276 VVECS-FVQSTV--TELPFFASKRAWKN 300 (300)
Q Consensus 276 v~~~s-~v~~~~--~~~~~~S~Pv~lg~ 300 (300)
++|+| +++|+| ++++|||+||++|+
T Consensus 244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~ 271 (309)
T PLN00135 244 WVSMGVYSDGSYGVPPGLIYSFPVTCEK 271 (309)
T ss_pred EEEEEEEecCccCCcCCeEEEEEEEEEC
Confidence 99999 689999 48999999999985
No 31
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=3.8e-51 Score=379.79 Aligned_cols=259 Identities=27% Similarity=0.440 Sum_probs=225.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC----cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVII 102 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi 102 (300)
|||+|+||+|.+|++++..|+..++.++|+|+|+++ .++.++|++|.... ...+.. .++|+ +++++||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d~-~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSDL-SDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCCH-HHhCCCCEEEE
Confidence 799999977999999999999999988999999943 47889999987432 122322 24454 67999999999
Q ss_pred cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA 181 (300)
Q Consensus 103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~ 181 (300)
++|.|+++|++|.|++..|+++++++++.|++++|++++|+++||+|.+|++ +++.++ +|++|+||+ |.|||+|+
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~---~~~~~g-~~~~~viG~gt~LDs~R~ 154 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYK---ALKESG-FDKNRVFGLGTHLDSLRF 154 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHH---HHHhcC-CCHHHEeeccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999976655 345666 999999999 68999999
Q ss_pred HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-C------CCHHHHHHHHHHHhchhhhhhhhccCCCCCccc
Q 022263 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254 (300)
Q Consensus 182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-~------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~ 254 (300)
+++||+++++++++|+++|+||| |++|||+||++++.+ . .++.+++++.++++++|++|++. ||+|+||
T Consensus 155 ~~~la~~l~v~~~~v~~~viGeH-g~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~---kg~t~~~ 230 (309)
T cd05294 155 KVAIAKHFNVHISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL---KGGSEYG 230 (309)
T ss_pred HHHHHHHHCcChHHeEEEEEecC-CCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHh---cCCchhh
Confidence 99999999999999999999999 689999999998764 1 22445789999999999999984 6789999
Q ss_pred hHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-C-CcCEEEEeEEecC
Q 022263 255 MAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-T-ELPFFASKRAWKN 300 (300)
Q Consensus 255 ~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~-~~~~~S~Pv~lg~ 300 (300)
+|.++++++++|++| ++.++|++ +.+|+| . +++|||.||++|+
T Consensus 231 ~a~~~~~ii~ail~~---~~~v~~vsv~~~g~~~~~~~~~~svP~~ig~ 276 (309)
T cd05294 231 PASAISNLVRTIAND---ERRILTVSTYLEGEIDGIRDVCIGVPVKLGK 276 (309)
T ss_pred HHHHHHHHHHHHHCC---CCeEEEEEEEECCccCCCCCeEEEeEEEEcC
Confidence 999999999999987 56799988 578887 2 4899999999985
No 32
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=3.4e-51 Score=379.99 Aligned_cols=260 Identities=35% Similarity=0.589 Sum_probs=227.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCC--cEEEEecCCccccccCCCCEEEEc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIP 103 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~~~aDiVIi~ 103 (300)
||||+|||| |+||+++++.++..++. ||+|+|+++ .++.++|+.|..... ..+.. .++|+ +++++||+||++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEEC
Confidence 689999996 99999999999998887 999999965 477888988875321 12222 24566 679999999999
Q ss_pred CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ehhHHHHH
Q 022263 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAK 182 (300)
Q Consensus 104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~Lds~R~~ 182 (300)
+|.|+++|++|.|++.+|++++++++++|++++|++++|++|||+|+||+++ ++.+ ++|++||+|+| .||++|++
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~---~~~s-~~~~~~viG~gt~lds~r~~ 153 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA---LKES-GFPKNRVIGMAGVLDSARFR 153 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHh-CCCcccEEEeCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999766653 3444 59999999995 89999999
Q ss_pred HHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----CCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHH
Q 022263 183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----NLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257 (300)
Q Consensus 183 ~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~ 257 (300)
++||+++++++++|+++|+||| |++++|+||++++.+ .++++++++|.+++++++++|++.. +||+++|++|.
T Consensus 154 ~~la~~l~v~~~~v~~~viGeh-g~s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~ 231 (307)
T PRK06223 154 TFIAEELNVSVKDVTAFVLGGH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231 (307)
T ss_pred HHHHHHhCcChhhCcccEEcCC-CCcceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence 9999999999999999999999 579999999998753 1556678999999999999999974 68999999999
Q ss_pred HHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263 258 AGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN 300 (300)
Q Consensus 258 a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~ 300 (300)
++++++++|+.| ++.++|++ +++|+|+ +++|||+||++|+
T Consensus 232 ~~~~ii~ail~~---~~~~~~~~v~~~g~yg~~~~~~s~P~~i~~ 273 (307)
T PRK06223 232 SIAEMVEAILKD---KKRVLPCSAYLEGEYGVKDVYVGVPVKLGK 273 (307)
T ss_pred HHHHHHHHHHcC---CCcEEEEEEEecCcCCCCCeEEEeEEEEeC
Confidence 999999999986 57899988 6788884 7899999999985
No 33
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=9.5e-51 Score=376.39 Aligned_cols=234 Identities=23% Similarity=0.253 Sum_probs=198.9
Q ss_pred EEEEEecCC----cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHH
Q 022263 56 RLALYDIAN----TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS 130 (300)
Q Consensus 56 el~L~D~~~----~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~ 130 (300)
.|+|+|+++ ++|+++||.|+.++ ...... ++|++++++|||+||++||.|++||++|.|++..|++|++++++
T Consensus 17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~ 94 (313)
T TIGR01756 17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE 94 (313)
T ss_pred EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 799999965 58999999999732 122222 35666899999999999999999999999999999999999999
Q ss_pred HHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHHHHHHcCCCCCceEEE-EEecCCCC
Q 022263 131 AIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGI 207 (300)
Q Consensus 131 ~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h~g~ 207 (300)
+|++++| ++++|++|||+|+||+++ +++.+++|++ +||+ |.|||+||+++||++++++|++|+.+ ||||| |+
T Consensus 95 ~i~~~a~~~~ivivvtNPvDv~t~v~---~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeH-G~ 169 (313)
T TIGR01756 95 ALSEYAKPTVKVLVIGNPVNTNCLVA---MLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNH-AE 169 (313)
T ss_pred HHHhhCCCCeEEEEeCCchHHHHHHH---HHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECC-CC
Confidence 9999996 588999999999776653 1355569999 9999 79999999999999999999999655 99999 57
Q ss_pred ceeeccCcCcC--CC-C------CCHH-HHHHHHHHHhchhhhhhhhccCCCCCccchH-HHHHHHHHHHHccCCCCCCc
Q 022263 208 TILPLFSQATP--KA-N------LADE-DIKALTKRTQDGGTEVVEAKAGKGSATLSMA-YAGAIFADACLKGLNGVPDV 276 (300)
Q Consensus 208 t~vp~~S~~~~--~~-~------~~~~-~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A-~a~~~~i~ai~~~~~~~~~v 276 (300)
+|||+||++++ .+ . ++++ .+++|.++++++|++|++ +||+|+|++| .|+++++++|++|.+ ++.+
T Consensus 170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~~a~ai~~iv~ail~~~~-~~~i 245 (313)
T TIGR01756 170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAASPVKASLQHMKAWLFGTR-PGEV 245 (313)
T ss_pred ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHHHHHHHHHHHHHHhcCCC-CCeE
Confidence 99999999988 53 1 2332 368999999999999998 5789999988 699999999999653 5689
Q ss_pred eeeee-eeC--CCC--CcCEEEEeEEecC
Q 022263 277 VECSF-VQS--TVT--ELPFFASKRAWKN 300 (300)
Q Consensus 277 ~~~s~-v~~--~~~--~~~~~S~Pv~lg~ 300 (300)
+|||. +++ +|+ +++|||+||++|+
T Consensus 246 ~pvsv~l~~~g~YGi~~~v~~s~P~vig~ 274 (313)
T TIGR01756 246 LSMGIPVPEGNPYGIKPGVIFSFPCTVDE 274 (313)
T ss_pred EEEEEEecCCCccCCCCCEEEEEEEEEeC
Confidence 99994 653 784 6999999999984
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=5.8e-46 Score=338.00 Aligned_cols=224 Identities=30% Similarity=0.431 Sum_probs=197.4
Q ss_pred EEEEcCCCChHHHHHHHHHhCC--CCCEEEEEecCC--cccHHHHhccccCCC-cEEEEecCCccccccCCCCEEEEcCC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIAN--TPGVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~--~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
|+||||+|.+|+++++.|++.+ ...||+|+|+++ .++.++|++|..... ..+.. .++|++++++|||+||+++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence 6899966999999999999988 667999999965 578899999986442 23333 36687899999999999999
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHH
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~l 185 (300)
.++++|++|.+++.+|++++++++++|+++||++|+|++|||+|.+|+++ ++.+ ++|++|+||+|.||++|+++++
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~---~~~s-g~~~~kviG~~~ld~~r~~~~l 155 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV---WRYS-GLPKEKVIGLGTLDPIRFRRIL 155 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHh-CCCchhEEEeecchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999665543 3444 5999999999769999999999
Q ss_pred HHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHH
Q 022263 186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADA 265 (300)
Q Consensus 186 a~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~a 265 (300)
|+++++++++|+++|||+|| ++++|+||+++ +|.++++++++
T Consensus 156 a~~l~v~~~~v~~~v~G~hg-~~~~~~~s~~~-------------------------------------~a~~~~~ii~a 197 (263)
T cd00650 156 AEKLGVDPDDVKVYILGEHG-GSQVPDWSTVR-------------------------------------IATSIADLIRS 197 (263)
T ss_pred HHHhCCCccceEEEEEEcCC-CceEeccccch-------------------------------------HHHHHHHHHHH
Confidence 99999999999999999995 68999999864 78999999999
Q ss_pred HHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263 266 CLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN 300 (300)
Q Consensus 266 i~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~ 300 (300)
|++| ++.++|++ +.+|+| ++++|||+||++|+
T Consensus 198 i~~~---~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~ 232 (263)
T cd00650 198 LLND---EGEILPVGVRNNGQIGIPDDVVVSVPCIVGK 232 (263)
T ss_pred HHcC---CCEEEEEEEEeCCccCCcCCEEEEEEEEEeC
Confidence 9997 56789988 578888 48999999999985
No 35
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.7e-46 Score=324.71 Aligned_cols=265 Identities=29% Similarity=0.349 Sum_probs=234.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCCCcEEEEecCCccccccCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS 97 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~a 97 (300)
++.+|.|.||+|++|+++.+.++....++ .++|+|+.+ .+|..|+|+|+.+| .++....++|..++|+|.
T Consensus 3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~P-lL~~Vvattd~~~afkdv 81 (332)
T KOG1496|consen 3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALP-LLKGVVATTDEVEAFKDV 81 (332)
T ss_pred CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhh-HHHhhhcccChhhhhccC
Confidence 57899999999999999999999765442 799999976 48899999999887 344434467888999999
Q ss_pred CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeh
Q 022263 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176 (300)
Q Consensus 98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~L 176 (300)
|+.|+..+.||++||+|.|++..|.+|+++.+..+++|+ |++.++++.||+|+++.++. ++++++|.+++-++|.|
T Consensus 82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTRL 158 (332)
T KOG1496|consen 82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTRL 158 (332)
T ss_pred cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhhh
Confidence 999999999999999999999999999999999999997 79999999999999998864 56778999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCce-EEEEEecCCCCceeeccCcCcCCC---------C-CCHHHH-HHHHHHHhchhhhhhhh
Q 022263 177 DVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA---------N-LADEDI-KALTKRTQDGGTEVVEA 244 (300)
Q Consensus 177 ds~R~~~~la~~l~v~~~~V-~~~v~G~h~g~t~vp~~S~~~~~~---------~-~~~~~~-~~i~~~v~~~g~~i~~~ 244 (300)
|++|+..++|.++|++.++| ++++||+|+ .||+|+..++++.. . -++.|+ .++++.|++||..+++.
T Consensus 159 DhNRA~~QlA~klgv~~~~VkNviIWGNHS-sTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a 237 (332)
T KOG1496|consen 159 DHNRALAQLALKLGVPVSDVKNVIIWGNHS-STQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA 237 (332)
T ss_pred chhhHHHHHHHhhCCchhhcceeEEecccc-cccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence 99999999999999999999 799999996 59999999998752 1 234554 59999999999999997
Q ss_pred ccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEec
Q 022263 245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWK 299 (300)
Q Consensus 245 ~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg 299 (300)
+ |-|+.+|.|.|++++++.|+.+.+ +.++++++ |.+|+| |++..||+||++.
T Consensus 238 r--k~SSA~SaA~aacDhi~dw~~gTp-eG~fvSmgV~sDGsYgip~gli~SfPv~~k 292 (332)
T KOG1496|consen 238 R--KLSSAMSAAKAACDHIRDWWFGTP-EGTFVSMGVYSDGSYGIPDGLIFSFPVTIK 292 (332)
T ss_pred h--hhhhhhhHHHhHhhhhhheecCCC-CccEEEEeeecCCCCCCCCCeEEEcceEec
Confidence 5 678999999999999999999987 56899999 579999 7899999999874
No 36
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=100.00 E-value=1.4e-33 Score=233.74 Aligned_cols=139 Identities=42% Similarity=0.643 Sum_probs=120.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
|||+||||+|+||+++++.|+++++.+||+|+|+++ ++|+++||+|+..+......... +.+++++|||+||+++|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccccccccEEEEeccc
Confidence 799999977999999999999999999999999974 68999999999765433332222 335899999999999999
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG 172 (300)
+++||++|.|++..|++++++++++|++++|+++++++|||+|.|+ +++++.+++||+|+||
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t----~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMT----YVAQKYSGFPPNKVIG 141 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHH----HHHHHHHTSSGGGEEE
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHH----HHHHHhhCcCcccCcC
Confidence 9999999999999999999999999999999999999999999544 4444445599999998
No 37
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=99.95 E-value=4.3e-28 Score=207.67 Aligned_cols=121 Identities=32% Similarity=0.479 Sum_probs=108.4
Q ss_pred eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----------CCCHHHHHHHHHHHhchhhhhh
Q 022263 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVV 242 (300)
Q Consensus 174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----------~~~~~~~~~i~~~v~~~g~~i~ 242 (300)
|.||++||++++|++++++|+++++|||||| |+++||+||++++.. .++++++++|.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeH-g~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEH-GDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSS-STTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecC-CcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 6799999999999999999999999999999 579999999998752 3667778999999999999999
Q ss_pred hhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC--Cc-CEEEEeEEecC
Q 022263 243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT--EL-PFFASKRAWKN 300 (300)
Q Consensus 243 ~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~--~~-~~~S~Pv~lg~ 300 (300)
+.| + |+|+||+|.|+++++++|++|. +.++|+| +++|+|+ ++ +|||+||+||+
T Consensus 80 ~~k-~-g~t~~s~A~a~~~~v~ail~~~---~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~ 136 (174)
T PF02866_consen 80 KAK-G-GSTSYSIAAAAARIVEAILKDE---RRILPVSVYLDGEYGIPDGCVYFSVPVVIGK 136 (174)
T ss_dssp HHH-S-SSCHHHHHHHHHHHHHHHHTTH---TEEEEEEEEEESGGGEESSSEEEEEEEEEET
T ss_pred eec-c-ccCcCCHHHHHHHHHHHHhhcc---cccccceeccccccCcccccceecceEEEcC
Confidence 975 2 8999999999999999999984 6799998 5788883 34 99999999995
No 38
>PRK15076 alpha-galactosidase; Provisional
Probab=99.92 E-value=5.9e-25 Score=212.45 Aligned_cols=164 Identities=21% Similarity=0.265 Sum_probs=129.2
Q ss_pred CceEEEEcCCCChHHHHHH--HHH-hCCCCC-EEEEEecCCc--c-cHHHHhcccc--CCCcEEEEecCCccccccCCCC
Q 022263 28 DRKVAVLGAAGGIGQPLAL--LMK-LNPLVS-RLALYDIANT--P-GVAADVGHIN--TRSEVAGYMGNDQLGQALEDSD 98 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~--~L~-~~~~~~-el~L~D~~~~--~-g~~~dl~~~~--~~~~v~~~~~t~d~~~a~~~aD 98 (300)
|+||+|||| |++|.+.++ .++ ..++.+ ||+|+|+++. + +..+ +++.. .....+.. .|+|++++++|||
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence 579999996 999988877 565 345554 9999999763 2 3333 33332 11123332 3578789999999
Q ss_pred EEEEcCCCC-CCCC--------------Ccchhh--------hhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHH
Q 022263 99 VVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155 (300)
Q Consensus 99 iVIi~ag~~-~~~g--------------~~r~dl--------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~ 155 (300)
+||++++++ ++++ ++|.|. +.+|++++++++++|+++||+||+|++|||+| ++
T Consensus 78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~d----iv 153 (431)
T PRK15076 78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMA----MN 153 (431)
T ss_pred EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHH----HH
Confidence 999999987 4555 567788 89999999999999999999999999999999 55
Q ss_pred HHHHHHhCCCCCCcEEEee--ehhHHHHHHHHHHHcCCCCCceEEEEEe-cC
Q 022263 156 AEVFKKAGTYNEKKLFGVT--TLDVVRAKTFYAGKANVNVAEVNVPVVG-GH 204 (300)
Q Consensus 156 ~~~~~~~~~~~~~kviG~t--~Lds~R~~~~la~~l~v~~~~V~~~v~G-~h 204 (300)
|+++. ++|+.||||+| .+|+. +.+|+.+|+++++|++++.| +|
T Consensus 154 t~~~~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH 199 (431)
T PRK15076 154 TWAMN---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINH 199 (431)
T ss_pred HHHHh---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecc
Confidence 55555 38899999997 57765 78999999999999999999 55
No 39
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.91 E-value=4.4e-24 Score=205.85 Aligned_cols=175 Identities=21% Similarity=0.210 Sum_probs=128.9
Q ss_pred ceEEEEcCCCChHHH--HHHHHHhCC--C-CCEEEEEecCCcc-----cHHHHhccccCCCcEEEEecCCccccccCCCC
Q 022263 29 RKVAVLGAAGGIGQP--LALLMKLNP--L-VSRLALYDIANTP-----GVAADVGHINTRSEVAGYMGNDQLGQALEDSD 98 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~--~a~~L~~~~--~-~~el~L~D~~~~~-----g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aD 98 (300)
|||+|||| |+. .+ +...|+... + .+||+|+|+++.+ ..+..+.+.... .++.. .|+|+++|++|||
T Consensus 1 ~KI~iIGg-GS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~-~~~v~-~ttD~~~Al~gAD 76 (425)
T cd05197 1 VKIAIIGG-GSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGA-DIKFE-KTMDLEDAIIDAD 76 (425)
T ss_pred CEEEEECC-chH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCC-CeEEE-EeCCHHHHhCCCC
Confidence 69999997 654 22 223444333 3 3799999998631 112223222221 34433 3689999999999
Q ss_pred EEEEcCCCC------------CCCCCc--------chhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263 99 VVIIPAGVP------------RKPGMT--------RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (300)
Q Consensus 99 iVIi~ag~~------------~~~g~~--------r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~ 158 (300)
+||.+..+. .+.|.- -.-...+|+++++++++.|+++||+||+|++|||+|. +|++
T Consensus 77 fVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di----~t~a 152 (425)
T cd05197 77 FVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGE----VTEA 152 (425)
T ss_pred EEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHH----HHHH
Confidence 999986432 233211 1224568999999999999999999999999999994 5555
Q ss_pred HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe-cCCCCceeeccCcCcCC
Q 022263 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPK 219 (300)
Q Consensus 159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G-~h~g~t~vp~~S~~~~~ 219 (300)
.++. +|+.|+||+|.. +.|+++++|+.+|+++++|+++++| ||+ |+||++++.
T Consensus 153 ~~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg-----~~~s~~~~~ 206 (425)
T cd05197 153 VRRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG-----IWLNRVRYN 206 (425)
T ss_pred HHHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe-----EeeEeEEEC
Confidence 5443 478999999977 9999999999999999999999999 994 899998764
No 40
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.90 E-value=1.6e-23 Score=201.58 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=126.2
Q ss_pred ceEEEEcCCCChHH-HHHHHHHhC-C-C-CCEEEEEecC-Ccc-----cHHHHhccccCCCcEEEEecCCccccccCCCC
Q 022263 29 RKVAVLGAAGGIGQ-PLALLMKLN-P-L-VSRLALYDIA-NTP-----GVAADVGHINTRSEVAGYMGNDQLGQALEDSD 98 (300)
Q Consensus 29 ~KI~IIGaaG~VG~-~~a~~L~~~-~-~-~~el~L~D~~-~~~-----g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aD 98 (300)
|||+|||| |+... .+...|++. . + .+||+|+|++ +.+ ..+..+.+... ..++.. .|+|+++|++|||
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~-~~~~v~-~t~d~~~al~gad 77 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAG-LPIKVH-LTTDRREALEGAD 77 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhC-CCeEEE-EeCCHHHHhCCCC
Confidence 69999997 76522 122344442 2 3 3799999998 431 11122222222 134433 3679999999999
Q ss_pred EEEEcCCCCCCCCCcchhh--------------------hhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263 99 VVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (300)
Q Consensus 99 iVIi~ag~~~~~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~ 158 (300)
+||+++++++.+++++++. ..+|++++++++++|+++||+||+|++|||+| ++|++
T Consensus 78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~----ivt~a 153 (419)
T cd05296 78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG----IVTEA 153 (419)
T ss_pred EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH----HHHHH
Confidence 9999999887777666553 56899999999999999999999999999999 56666
Q ss_pred HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe-cCC
Q 022263 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHA 205 (300)
Q Consensus 159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G-~h~ 205 (300)
.++.+ +.|+||+|.. +.|+++++|+.+|+++++|+++++| ||-
T Consensus 154 ~~k~~---~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH~ 197 (419)
T cd05296 154 VLRHT---GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFIDYAGLNHL 197 (419)
T ss_pred HHHhc---cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEEEEecccc
Confidence 66543 7899999987 4899999999999999999999999 873
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.90 E-value=5.8e-22 Score=191.53 Aligned_cols=163 Identities=20% Similarity=0.254 Sum_probs=117.1
Q ss_pred ceEEEEcCCCChHHH--HHHHHHhC--CC-CCEEEEEecCCcc-----cHHHHhccccCCCcEEEEecCCccccccCCCC
Q 022263 29 RKVAVLGAAGGIGQP--LALLMKLN--PL-VSRLALYDIANTP-----GVAADVGHINTRSEVAGYMGNDQLGQALEDSD 98 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~--~a~~L~~~--~~-~~el~L~D~~~~~-----g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aD 98 (300)
|||+|||| |+. .+ +...|++. .+ .+||+|+|+++.+ ..+..+.+... ..++.. .|+|+++|++|||
T Consensus 1 ~KI~iIGa-GS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g-~~~~v~-~Ttdr~eAl~gAD 76 (437)
T cd05298 1 FKIVIAGG-GST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENY-PEIKFV-YTTDPEEAFTDAD 76 (437)
T ss_pred CeEEEECC-cHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhC-CCeEEE-EECCHHHHhCCCC
Confidence 79999997 654 22 22344444 23 3799999998631 12222222211 234443 3689999999999
Q ss_pred EEEEcCCCC------------CCCCC---c-----chhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263 99 VVIIPAGVP------------RKPGM---T-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (300)
Q Consensus 99 iVIi~ag~~------------~~~g~---~-----r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~ 158 (300)
+||.+..+. .+.|. + -.-...+|++++.++++.|+++||+||+|++|||+| ++|++
T Consensus 77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~----~vt~~ 152 (437)
T cd05298 77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAA----IVAEA 152 (437)
T ss_pred EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHH
Confidence 999986532 23332 1 122456899999999999999999999999999999 45555
Q ss_pred HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe
Q 022263 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG 202 (300)
Q Consensus 159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G 202 (300)
.++. +|+.|++|+|+--. .++..+|+.+|+++++++..+.|
T Consensus 153 ~~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~G 193 (437)
T cd05298 153 LRRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFG 193 (437)
T ss_pred HHHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEe
Confidence 5543 77899999997544 46888999999999999999998
No 42
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.86 E-value=3.9e-21 Score=185.89 Aligned_cols=166 Identities=22% Similarity=0.179 Sum_probs=127.3
Q ss_pred ceEEEEcCCCChHHHHHH--HHHhC-CCC-CEEEEEecCCc--ccHHHHhcccc--CCCcEEEEecCCccccccCCCCEE
Q 022263 29 RKVAVLGAAGGIGQPLAL--LMKLN-PLV-SRLALYDIANT--PGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVV 100 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~--~L~~~-~~~-~el~L~D~~~~--~g~~~dl~~~~--~~~~v~~~~~t~d~~~a~~~aDiV 100 (300)
+||+|||| |.+|++.+. .++.. .+. .+|+|+|+++. +....++.+.. .....+.. .|+|++++++|||+|
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence 58999996 999999876 45433 343 39999999763 33444444332 11122322 357888999999999
Q ss_pred EEcCCCCCCCCCcc----------------------hhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263 101 IIPAGVPRKPGMTR----------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (300)
Q Consensus 101 Ii~ag~~~~~g~~r----------------------~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~ 158 (300)
|++++.+..++.++ .....+|++++.++++.++++||++|++++|||++ ++|++
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~----i~t~~ 154 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMA----ELTWA 154 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHH----HHHHH
Confidence 99998766666554 33557899999999999999999999999999999 55555
Q ss_pred HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe-cC
Q 022263 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GH 204 (300)
Q Consensus 159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G-~h 204 (300)
..+.. ..|++|+|.- +.|+++.+|+.+++++++|+++++| +|
T Consensus 155 ~~k~~---~~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH 197 (423)
T cd05297 155 LNRYT---PIKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINH 197 (423)
T ss_pred HHHhC---CCCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeecc
Confidence 55543 2799999865 7889999999999999999999999 44
No 43
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.78 E-value=2.8e-18 Score=147.11 Aligned_cols=152 Identities=22% Similarity=0.264 Sum_probs=101.0
Q ss_pred eEEEEcCCCChHHHHHH--HHHhCCCC--CEEEEEecCCcc-----cHHHHhccccCCCcEEEEecCCccccccCCCCEE
Q 022263 30 KVAVLGAAGGIGQPLAL--LMKLNPLV--SRLALYDIANTP-----GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV 100 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~--~L~~~~~~--~el~L~D~~~~~-----g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiV 100 (300)
||+|||| |++-.+... .+...+-. +||+|+|+++.+ ..+..+.+... ..++.. .|+|+++|++|||+|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~-~~~~v~-~ttd~~eAl~gADfV 77 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAG-ADLKVE-ATTDRREALEGADFV 77 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCT-TSSEEE-EESSHHHHHTTESEE
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcC-CCeEEE-EeCCHHHHhCCCCEE
Confidence 8999997 887765432 33443332 599999998631 12222222221 133332 267999999999999
Q ss_pred EEcCCC------------CCCCCCcc----------hhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263 101 IIPAGV------------PRKPGMTR----------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (300)
Q Consensus 101 Ii~ag~------------~~~~g~~r----------~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~ 158 (300)
|.+..+ |.+.|..- .-...++++.+.++++.|+++|||||++++|||+. +++++
T Consensus 78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~----~vt~a 153 (183)
T PF02056_consen 78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMG----IVTEA 153 (183)
T ss_dssp EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH----HHHHH
T ss_pred EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHH----HHHHH
Confidence 998653 44554321 22456899999999999999999999999999999 56666
Q ss_pred HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCC
Q 022263 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV 191 (300)
Q Consensus 159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v 191 (300)
..+. +|..|++|+|+-- .-+...+|+.||+
T Consensus 154 ~~r~--~~~~k~vGlCh~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 154 LSRY--TPKIKVVGLCHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp HHHH--STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred HHHh--CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence 6553 5568999999764 3467889998874
No 44
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.76 E-value=9.5e-18 Score=159.77 Aligned_cols=166 Identities=24% Similarity=0.321 Sum_probs=117.8
Q ss_pred CCceEEEEcCCCChHHHHHH--HHHhCC-C-CCEEEEEecCCccc-HH----HHhccccCCCcEEEEecCCccccccCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLAL--LMKLNP-L-VSRLALYDIANTPG-VA----ADVGHINTRSEVAGYMGNDQLGQALEDS 97 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~--~L~~~~-~-~~el~L~D~~~~~g-~~----~dl~~~~~~~~v~~~~~t~d~~~a~~~a 97 (300)
+++||+|||| |+.+..-.. .|.+.+ + ..||.|+|+++.+- .. ..+-+.... .++... |+|+++|++||
T Consensus 2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~-~~kv~~-ttd~~eAl~gA 78 (442)
T COG1486 2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGA-PVKVEA-TTDRREALEGA 78 (442)
T ss_pred CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCC-CeEEEE-ecCHHHHhcCC
Confidence 4579999997 877755432 233322 2 35999999976321 11 222222222 244432 67999999999
Q ss_pred CEEEEcCCC------------CCCCCCcchh--------hhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH
Q 022263 98 DVVIIPAGV------------PRKPGMTRDD--------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE 157 (300)
Q Consensus 98 DiVIi~ag~------------~~~~g~~r~d--------l~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~ 157 (300)
|+|+.++.+ |.|.|.-+.| ...++++++-+|++.|+++||+||++++|||+. ++|+
T Consensus 79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~----~vTe 154 (442)
T COG1486 79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAA----IVTE 154 (442)
T ss_pred CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHH----HHHH
Confidence 999998643 3444422211 345899999999999999999999999999999 6777
Q ss_pred HHHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCC-CceEEEEEe
Q 022263 158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVG 202 (300)
Q Consensus 158 ~~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~-~~V~~~v~G 202 (300)
+.++. +|..|++|+|+.- .-....+|+.|++++ ++++.-+.|
T Consensus 155 Av~r~--~~~~K~VGlCh~~-~g~~~~lAe~L~~~~~~~l~~~~aG 197 (442)
T COG1486 155 AVRRL--YPKIKIVGLCHGP-IGIAMELAEVLGLEPREDLRYRVAG 197 (442)
T ss_pred HHHHh--CCCCcEEeeCCch-HHHHHHHHHHhCCCchhceeEEEee
Confidence 76663 5545999999753 346788999999975 999999998
No 45
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.88 E-value=6.8e-09 Score=89.39 Aligned_cols=118 Identities=23% Similarity=0.370 Sum_probs=79.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---c--cHHHH-hc---c-ccC--------CCcEEEEecCCccc
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---P--GVAAD-VG---H-INT--------RSEVAGYMGNDQLG 91 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~--g~~~d-l~---~-~~~--------~~~v~~~~~t~d~~ 91 (300)
||+|||| |.+|..+|..++..|+ +++|+|.++. . ....+ +. + ... ..+++. ++|++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE 74 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence 7999996 9999999999999998 9999999752 1 11111 11 0 000 124553 46786
Q ss_pred cccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcE
Q 022263 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL 170 (300)
Q Consensus 92 ~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kv 170 (300)
++. +||+||.+. .++.++.+++..++.+.+ |++++ +||.... -++++....+ .|+|+
T Consensus 75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl---~i~~la~~~~--~p~R~ 132 (180)
T PF02737_consen 75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSL---SISELAAALS--RPERF 132 (180)
T ss_dssp GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS----HHHHHTTSS--TGGGE
T ss_pred HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCC---CHHHHHhccC--cCceE
Confidence 555 999999984 468899999999999998 47775 7887764 3455554432 47889
Q ss_pred EEeee
Q 022263 171 FGVTT 175 (300)
Q Consensus 171 iG~t~ 175 (300)
+|+..
T Consensus 133 ig~Hf 137 (180)
T PF02737_consen 133 IGMHF 137 (180)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99864
No 46
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.87 E-value=2.2e-08 Score=94.55 Aligned_cols=114 Identities=20% Similarity=0.269 Sum_probs=83.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHH-------------HHhcccc-CCCcEEEEecCCcccccc
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-------------ADVGHIN-TRSEVAGYMGNDQLGQAL 94 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~-------------~dl~~~~-~~~~v~~~~~t~d~~~a~ 94 (300)
|||+|+| +|+||...+..|++.|+ +++.+|+++.+-.. .+|.... ...+++. |+|+++++
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~ 74 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV 74 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence 8999999 59999999999999988 99999997532111 1222111 1123554 67999999
Q ss_pred CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe--cCCCcccHHH
Q 022263 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPI 154 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~~~i 154 (300)
+++|++||+.|.|.++.. ..+...+...++.|.++.+...+|++ |-|+.+.-.+
T Consensus 75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v 130 (414)
T COG1004 75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEV 130 (414)
T ss_pred hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHH
Confidence 999999999999977632 34678889999999998876344444 6788865444
No 47
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.82 E-value=1.2e-08 Score=94.34 Aligned_cols=141 Identities=23% Similarity=0.312 Sum_probs=96.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccH--HHH----hcccc--C----CCcEEEEecCCcccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV--AAD----VGHIN--T----RSEVAGYMGNDQLGQ 92 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~--~~d----l~~~~--~----~~~v~~~~~t~d~~~ 92 (300)
.+||+|||| |.||..+|..++..|+ +|+|+|+++. ++. ... +.... . ...+..+..++++ .
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~ 78 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A 78 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence 469999996 9999999999999778 9999999742 111 111 11110 0 0111222224565 4
Q ss_pred ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022263 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF 171 (300)
Q Consensus 93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kvi 171 (300)
++++||+||.++ .+|.++.+++..++.+++ |++++ .||.+.. -++++.... ..|+|++
T Consensus 79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl---~it~ia~~~--~rper~i 137 (307)
T COG1250 79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSL---SITELAEAL--KRPERFI 137 (307)
T ss_pred HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCC---CHHHHHHHh--CCchhEE
Confidence 899999999984 679999999999999998 58876 9999876 345555443 4578999
Q ss_pred Eee-------------------ehhHHHHHHHHHHHcCCCC
Q 022263 172 GVT-------------------TLDVVRAKTFYAGKANVNV 193 (300)
Q Consensus 172 G~t-------------------~Lds~R~~~~la~~l~v~~ 193 (300)
|+. .-++...-..++++++-.|
T Consensus 138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 983 1244555567778877443
No 48
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.72 E-value=9.9e-08 Score=89.31 Aligned_cols=119 Identities=14% Similarity=0.169 Sum_probs=83.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cH-------HHH-hcccc-----CCCcEEEEecCCccccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GV-------AAD-VGHIN-----TRSEVAGYMGNDQLGQA 93 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~-------~~d-l~~~~-----~~~~v~~~~~t~d~~~a 93 (300)
..||+|||+ |.||+.+|..++..|+ +++++|+++.. .. .++ +.... ...+++. +++++++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~a 80 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEAC 80 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHH
Confidence 358999995 9999999999999998 99999996521 00 011 11010 0123332 3577788
Q ss_pred cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG 172 (300)
+++||+|+.++ .+|.++.+++...+.+++| ++ |+.||.+.. .++++.... -.|+|++|
T Consensus 81 v~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l---~~s~la~~~--~~p~R~~g 139 (321)
T PRK07066 81 VADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGL---LPTDFYARA--THPERCVV 139 (321)
T ss_pred hcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCcc---CHHHHHHhc--CCcccEEE
Confidence 99999999984 4678889999999999986 55 458898864 234444433 24678888
Q ss_pred e
Q 022263 173 V 173 (300)
Q Consensus 173 ~ 173 (300)
+
T Consensus 140 ~ 140 (321)
T PRK07066 140 G 140 (321)
T ss_pred E
Confidence 6
No 49
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.63 E-value=2.7e-07 Score=85.11 Aligned_cols=120 Identities=14% Similarity=0.237 Sum_probs=81.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cH-----HHH-hcccc-C--------CCcEEEEecCCc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GV-----AAD-VGHIN-T--------RSEVAGYMGNDQ 89 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~-----~~d-l~~~~-~--------~~~v~~~~~t~d 89 (300)
+.||+|||+ |.+|..+|..++..|+ +++|+|+++.. +. .+| +.+.. . ..+++. ++|
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~~ 78 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TTD 78 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eCC
Confidence 348999996 9999999999999998 99999997521 10 011 11110 0 112332 457
Q ss_pred cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-C-CeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-P-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (300)
Q Consensus 90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~ 167 (300)
+ +++++||+||.++ .++.++.+++...+.+++ + ++++ +||....- ++.+.... -.+
T Consensus 79 ~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~---~~~la~~~--~~~ 136 (286)
T PRK07819 79 L-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIP---IMKLAAAT--KRP 136 (286)
T ss_pred H-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhc--CCC
Confidence 7 6799999999984 567888999999999997 4 6655 77776642 22233322 346
Q ss_pred CcEEEeee
Q 022263 168 KKLFGVTT 175 (300)
Q Consensus 168 ~kviG~t~ 175 (300)
+|++|+..
T Consensus 137 ~r~~g~hf 144 (286)
T PRK07819 137 GRVLGLHF 144 (286)
T ss_pred ccEEEEec
Confidence 78888743
No 50
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.63 E-value=9.8e-08 Score=82.57 Aligned_cols=123 Identities=21% Similarity=0.277 Sum_probs=71.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-------------HHHhcccc-CCCcEEEEecCCcccccc
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-------------AADVGHIN-TRSEVAGYMGNDQLGQAL 94 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-------------~~dl~~~~-~~~~v~~~~~t~d~~~a~ 94 (300)
|||+|||. |+||..+|..|+..|+ +++-+|+++.+-. ..++.... ...+++. ++|.++++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ai 74 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEEAI 74 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh---hhhhhhhh
Confidence 89999995 9999999999999998 9999999753111 01111111 1224554 46777889
Q ss_pred CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEe-cCCCcccHHHHHHHHHHhC
Q 022263 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMI-SNPVNSTVPIAAEVFKKAG 163 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~-tNP~d~~~~i~~~~~~~~~ 163 (300)
++||++|++.+.|..++. .-+...+.+.++.|.++.. +.++++= |=|..+.--++..++++.+
T Consensus 75 ~~adv~~I~VpTP~~~~~------~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDG------SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp HH-SEEEE----EBETTT------SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred hccceEEEecCCCccccC------CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 999999999998866532 2244556666666666643 4454443 5677754434444555554
No 51
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.61 E-value=3.4e-07 Score=84.32 Aligned_cols=119 Identities=22% Similarity=0.406 Sum_probs=78.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHH----hccc-----cC---------CCcEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAAD----VGHI-----NT---------RSEVAGYMGND 88 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~d----l~~~-----~~---------~~~v~~~~~t~ 88 (300)
.+||+|||+ |.+|..+|..++..++ +|+++|+++.. ....+ +.+. .. ...++. ++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~ 76 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT 76 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence 368999996 9999999999999887 89999996521 11111 1000 00 012332 45
Q ss_pred ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (300)
Q Consensus 89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~ 167 (300)
|+++++++||+||++. .++.+..+++.+++.++++ ++++ ++|.... .++++.+... .+
T Consensus 77 d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~sntSt~---~~~~~~~~~~--~~ 135 (287)
T PRK08293 77 DLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKTIF--ATNSSTL---LPSQFAEATG--RP 135 (287)
T ss_pred CHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCCEE--EECcccC---CHHHHHhhcC--Cc
Confidence 7777899999999985 2456777888888888876 5543 5666653 2344444432 35
Q ss_pred CcEEEe
Q 022263 168 KKLFGV 173 (300)
Q Consensus 168 ~kviG~ 173 (300)
+|++|+
T Consensus 136 ~r~vg~ 141 (287)
T PRK08293 136 EKFLAL 141 (287)
T ss_pred ccEEEE
Confidence 678876
No 52
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.52 E-value=3.9e-07 Score=93.93 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=85.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccH--HHHh-----ccccC--------CCcEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV--AADV-----GHINT--------RSEVAGYMGND 88 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~--~~dl-----~~~~~--------~~~v~~~~~t~ 88 (300)
+..||+|||| |.+|..+|..++..|+ +++|+|.+.. ++. ..+. ..... ..+++. ++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~ 385 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP---TL 385 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence 5568999996 9999999999999998 9999999652 111 1111 11000 113433 45
Q ss_pred ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (300)
Q Consensus 89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~ 167 (300)
|+ +++++||+||.++ .++.++.+++..++.+++| ++++ .||.+.. -++++.... -.|
T Consensus 386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l---~i~~ia~~~--~~p 443 (714)
T TIGR02437 386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTI---SISLLAKAL--KRP 443 (714)
T ss_pred CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCC---CHHHHHhhc--CCc
Confidence 66 6799999999984 5789999999999999985 6665 8998875 345555443 347
Q ss_pred CcEEEe
Q 022263 168 KKLFGV 173 (300)
Q Consensus 168 ~kviG~ 173 (300)
+|++|+
T Consensus 444 ~r~ig~ 449 (714)
T TIGR02437 444 ENFCGM 449 (714)
T ss_pred ccEEEE
Confidence 899998
No 53
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.52 E-value=5e-07 Score=93.21 Aligned_cols=119 Identities=20% Similarity=0.238 Sum_probs=85.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccH--H---H-Hh-ccccC--------CCcEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV--A---A-DV-GHINT--------RSEVAGYMGND 88 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~--~---~-dl-~~~~~--------~~~v~~~~~t~ 88 (300)
+..||+|||| |.+|..+|..++..|+ +++|+|++.. ++. . + .+ ..... ..+++. ++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~ 385 (715)
T PRK11730 312 PVKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TL 385 (715)
T ss_pred ccceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence 3458999996 9999999999999998 9999999752 111 1 0 01 11000 123443 45
Q ss_pred ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (300)
Q Consensus 89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~ 167 (300)
|+ +++++||+||.++ .++.++.+++..++.+++| ++++ .||.+.. -++++..... .|
T Consensus 386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl---~i~~la~~~~--~p 443 (715)
T PRK11730 386 DY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTI---SISLLAKALK--RP 443 (715)
T ss_pred CH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCC---CHHHHHhhcC--CC
Confidence 76 6799999999984 5789999999999999996 6554 8998875 2455555443 47
Q ss_pred CcEEEe
Q 022263 168 KKLFGV 173 (300)
Q Consensus 168 ~kviG~ 173 (300)
+|++|+
T Consensus 444 ~r~~g~ 449 (715)
T PRK11730 444 ENFCGM 449 (715)
T ss_pred ccEEEE
Confidence 889997
No 54
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.52 E-value=5.8e-07 Score=92.93 Aligned_cols=119 Identities=19% Similarity=0.291 Sum_probs=85.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccH--HHH-hcc----ccC--------CCcEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV--AAD-VGH----INT--------RSEVAGYMGND 88 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~--~~d-l~~----~~~--------~~~v~~~~~t~ 88 (300)
+..||+|||| |.+|..+|..++..|+ +|+|+|+++. ++. ..+ +.. ... ..+++. ++
T Consensus 334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~ 407 (737)
T TIGR02441 334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TL 407 (737)
T ss_pred cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eC
Confidence 4458999996 9999999999999998 9999999652 111 111 110 000 123443 45
Q ss_pred ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (300)
Q Consensus 89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~ 167 (300)
|+ +++++||+||.++ .+|.++.+++..++.+++| ++++ .||.+..- ++++..... .|
T Consensus 408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~---i~~la~~~~--~p 465 (737)
T TIGR02441 408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALP---IKDIAAVSS--RP 465 (737)
T ss_pred CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC---HHHHHhhcC--Cc
Confidence 76 6799999999984 5789999999999999986 6665 89988752 345554433 47
Q ss_pred CcEEEe
Q 022263 168 KKLFGV 173 (300)
Q Consensus 168 ~kviG~ 173 (300)
+|++|+
T Consensus 466 ~r~ig~ 471 (737)
T TIGR02441 466 EKVIGM 471 (737)
T ss_pred cceEEE
Confidence 899997
No 55
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.49 E-value=7e-07 Score=92.06 Aligned_cols=119 Identities=20% Similarity=0.333 Sum_probs=84.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCc---cc--HHHHhc-----ccc--------CCCcEEEEecC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANT---PG--VAADVG-----HIN--------TRSEVAGYMGN 87 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~---~g--~~~dl~-----~~~--------~~~~v~~~~~t 87 (300)
+..||+|||| |.+|..+|..++ ..|+ +|+|+|.+.. ++ ...+.. ... ...+++. +
T Consensus 308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~ 381 (708)
T PRK11154 308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---T 381 (708)
T ss_pred cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---e
Confidence 4568999996 999999999988 7788 9999999642 11 111111 000 0123443 4
Q ss_pred CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022263 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN 166 (300)
Q Consensus 88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~ 166 (300)
+|+ +++++||+||.++ .+|.++.+++..++.++++ ++++ .||.+... ++++.... -.
T Consensus 382 ~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~---i~~la~~~--~~ 439 (708)
T PRK11154 382 TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLP---IGQIAAAA--AR 439 (708)
T ss_pred CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHHhc--Cc
Confidence 576 6899999999984 5789999999999999984 7665 89988753 44554443 24
Q ss_pred CCcEEEe
Q 022263 167 EKKLFGV 173 (300)
Q Consensus 167 ~~kviG~ 173 (300)
|+|++|+
T Consensus 440 p~r~ig~ 446 (708)
T PRK11154 440 PEQVIGL 446 (708)
T ss_pred ccceEEE
Confidence 6789998
No 56
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.47 E-value=1.3e-07 Score=82.85 Aligned_cols=124 Identities=17% Similarity=0.303 Sum_probs=87.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc------ccHHHHhccccC-----------------CCc
Q 022263 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT------PGVAADVGHINT-----------------RSE 80 (300)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~------~g~~~dl~~~~~-----------------~~~ 80 (300)
...+...|+|+|| |.+|+.+|+..++.|+ .+.|+|.++. ++....+.+... -.+
T Consensus 7 ~~~~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 7 NMAEIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccccccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 3445668999996 9999999999999999 8999999751 222222221110 012
Q ss_pred EEEEecCCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHH
Q 022263 81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVF 159 (300)
Q Consensus 81 v~~~~~t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~ 159 (300)
++. ++|..++++|||+||.+ +.+|+.+.+++.+.+.+.|+ ++++ .||.... -++.+.
T Consensus 84 i~~---~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il--~tNTSSl---~lt~ia 141 (298)
T KOG2304|consen 84 IKT---STNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL--ATNTSSL---SLTDIA 141 (298)
T ss_pred HHH---cCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE--eecccce---eHHHHH
Confidence 222 45778889999999876 47899999999999999997 5544 8998875 234443
Q ss_pred HHhCCCCCCcEEEee
Q 022263 160 KKAGTYNEKKLFGVT 174 (300)
Q Consensus 160 ~~~~~~~~~kviG~t 174 (300)
... -.|.++.|+.
T Consensus 142 ~~~--~~~srf~GlH 154 (298)
T KOG2304|consen 142 SAT--QRPSRFAGLH 154 (298)
T ss_pred hhc--cChhhhceee
Confidence 332 4578999995
No 57
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.47 E-value=1e-06 Score=90.69 Aligned_cols=119 Identities=18% Similarity=0.284 Sum_probs=83.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCc---cc--HHH-Hhccc----cC--------CCcEEEEecC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANT---PG--VAA-DVGHI----NT--------RSEVAGYMGN 87 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~---~g--~~~-dl~~~----~~--------~~~v~~~~~t 87 (300)
+..||+|||| |.+|..+|..++ ..|+ +|+|+|+++. ++ ... .+... .. ...++. +
T Consensus 303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~ 376 (699)
T TIGR02440 303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---T 376 (699)
T ss_pred cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---e
Confidence 4568999996 999999999888 4788 9999999752 11 111 11110 00 113443 4
Q ss_pred CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022263 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN 166 (300)
Q Consensus 88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~ 166 (300)
+|+ +++++||+||.++ .++.++.+++..++.++++ ++++ .||.+... ++++.... -.
T Consensus 377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~---i~~la~~~--~~ 434 (699)
T TIGR02440 377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLP---IGQIAAAA--SR 434 (699)
T ss_pred CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCC---HHHHHHhc--CC
Confidence 576 6899999999984 5788999999999999996 6654 89988753 34444443 34
Q ss_pred CCcEEEe
Q 022263 167 EKKLFGV 173 (300)
Q Consensus 167 ~~kviG~ 173 (300)
|+|++|+
T Consensus 435 p~r~~g~ 441 (699)
T TIGR02440 435 PENVIGL 441 (699)
T ss_pred cccEEEE
Confidence 7889997
No 58
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.45 E-value=2.3e-06 Score=84.22 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=77.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHH-------------HHhccccCCCcEEEEecCCcccccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-------------ADVGHINTRSEVAGYMGNDQLGQAL 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~-------------~dl~~~~~~~~v~~~~~t~d~~~a~ 94 (300)
+|||+|||+ |+||..+|..|+..|.--+++.+|+++.+-.. .++........++. |+|+++++
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~~i 76 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEKHV 76 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHHHH
Confidence 689999995 99999999999987532389999997532111 11110000111332 46777789
Q ss_pred CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe--cCCCcccH
Q 022263 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTV 152 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~~ 152 (300)
++||++|++.+.|..++....+ -.-+...+.+.++.|.++.+++.+|+. |-|..+.-
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~ 135 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH
Confidence 9999999999988754210001 123556678888888887765544444 77888543
No 59
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.44 E-value=2.9e-06 Score=77.85 Aligned_cols=118 Identities=21% Similarity=0.370 Sum_probs=77.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---H-----H-HHhcccc-C--------CCcEEEEecCCc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---V-----A-ADVGHIN-T--------RSEVAGYMGNDQ 89 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~-----~-~dl~~~~-~--------~~~v~~~~~t~d 89 (300)
+.||+|||+ |.||..++..++..++ +++++|+++... . . .++.+.. . ...++. ++|
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~ 76 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTD 76 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence 458999996 9999999999999987 899999865311 1 0 0111110 0 013332 346
Q ss_pred cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (300)
Q Consensus 90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~ 168 (300)
+ +++++||+||+++ .++..+.+++.+.+.++++ ++++ +||-.... ++++....+ .+.
T Consensus 77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~---~~~la~~~~--~~~ 134 (282)
T PRK05808 77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLS---ITELAAATK--RPD 134 (282)
T ss_pred H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHHhhC--CCc
Confidence 5 5689999999985 3456777888888998876 6655 66666642 233334332 356
Q ss_pred cEEEe
Q 022263 169 KLFGV 173 (300)
Q Consensus 169 kviG~ 173 (300)
+++|+
T Consensus 135 r~ig~ 139 (282)
T PRK05808 135 KVIGM 139 (282)
T ss_pred ceEEe
Confidence 78887
No 60
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.42 E-value=4.4e-07 Score=76.29 Aligned_cols=94 Identities=26% Similarity=0.378 Sum_probs=62.8
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcccc--------CCCcEEEEecCCccccccCCCCEEE
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------TRSEVAGYMGNDQLGQALEDSDVVI 101 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~--------~~~~v~~~~~t~d~~~a~~~aDiVI 101 (300)
||+|+|| |+.|.++|..|+.++. ++.||+.++.....+.-.+.. .+..+.. ++|+++++++||+||
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence 8999996 9999999999999997 999999865322222222221 1223443 578889999999999
Q ss_pred EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEec
Q 022263 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMIS 145 (300)
Q Consensus 102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~t 145 (300)
++.- ....+++++++..+-+ +..+++++
T Consensus 75 iavP----------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 75 IAVP----------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred eccc----------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 9842 2335777788887764 55555544
No 61
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.38 E-value=4.8e-06 Score=81.29 Aligned_cols=173 Identities=13% Similarity=0.052 Sum_probs=97.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
.++|||.|+||+|+||++++..|...+. +|+.+|.... +....+.+......+..+.+ +-++.++.++|+||++|+
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~~~D~ViHlAa 193 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILLEVDQIYHLAC 193 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-ccccccccCCCEEEECce
Confidence 4568999999999999999999999887 9999997431 11111111110112332221 123345789999999997
Q ss_pred CCC--CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC---cccHHHHHHH-HHHhCCCCCCcEEEeeehhHH
Q 022263 106 VPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV---NSTVPIAAEV-FKKAGTYNEKKLFGVTTLDVV 179 (300)
Q Consensus 106 ~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~---d~~~~i~~~~-~~~~~~~~~~kviG~t~Lds~ 179 (300)
... ....+..+.+..|+....++++.+++.+. .+|.+|.-. +......+|- +....-..+....|.+.+...
T Consensus 194 ~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE 271 (436)
T PLN02166 194 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAE 271 (436)
T ss_pred eccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHHH
Confidence 532 11223456778999999999999988753 455553210 0000000010 000000223344555544444
Q ss_pred HHHHHHHHHcCCCCCceEE-EEEecC
Q 022263 180 RAKTFYAGKANVNVAEVNV-PVVGGH 204 (300)
Q Consensus 180 R~~~~la~~l~v~~~~V~~-~v~G~h 204 (300)
++....++..+++..-++. .++|.+
T Consensus 272 ~~~~~y~~~~~l~~~ilR~~~vYGp~ 297 (436)
T PLN02166 272 TLAMDYHRGAGVEVRIARIFNTYGPR 297 (436)
T ss_pred HHHHHHHHHhCCCeEEEEEccccCCC
Confidence 5444455556666555553 377764
No 62
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.36 E-value=5.8e-06 Score=76.28 Aligned_cols=118 Identities=14% Similarity=0.303 Sum_probs=75.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHH--------hc---cccC---------CCcEEEEecC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAAD--------VG---HINT---------RSEVAGYMGN 87 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~d--------l~---~~~~---------~~~v~~~~~t 87 (300)
.||+|||+ |.+|..++..++..|+ +|+++|+++..- ...+ +. +... ...+.. +
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~ 77 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S 77 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence 58999996 9999999999999988 899999975311 1101 11 0000 011222 3
Q ss_pred CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022263 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN 166 (300)
Q Consensus 88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~ 166 (300)
+++ +++++||+||++. ..+.++.+++.+++.++++ ++++ +||.... .++++..... .
T Consensus 78 ~~~-~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~---~~~~la~~~~--~ 135 (291)
T PRK06035 78 TSY-ESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSGI---MIAEIATALE--R 135 (291)
T ss_pred CCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCC---CHHHHHhhcC--C
Confidence 455 6789999999985 2345667888888888875 6655 4665543 2234443322 3
Q ss_pred CCcEEEee
Q 022263 167 EKKLFGVT 174 (300)
Q Consensus 167 ~~kviG~t 174 (300)
++|++|+.
T Consensus 136 ~~r~ig~h 143 (291)
T PRK06035 136 KDRFIGMH 143 (291)
T ss_pred cccEEEEe
Confidence 67888873
No 63
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.35 E-value=4.2e-06 Score=83.04 Aligned_cols=124 Identities=21% Similarity=0.293 Sum_probs=81.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-----H---H-Hhcccc-C--------CCcEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----A---A-DVGHIN-T--------RSEVAGYMGND 88 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-----~---~-dl~~~~-~--------~~~v~~~~~t~ 88 (300)
+..||+|||+ |.||..+|..++..|+ +++++|+++..-. . + .+.... . ..+++. ++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~ 77 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT 77 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence 3458999996 9999999999999998 9999999753111 0 0 111110 0 012333 35
Q ss_pred ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (300)
Q Consensus 89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~ 168 (300)
++ +++++||+||.+. .++..+.+++...+.++++...+ ++||.+..- ++++..... .|.
T Consensus 78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~---i~~iA~~~~--~p~ 136 (503)
T TIGR02279 78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLS---ITAIAAGLA--RPE 136 (503)
T ss_pred CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCC---HHHHHHhcC--ccc
Confidence 66 5689999999984 46778888888889999864433 478887653 233333332 366
Q ss_pred cEEEeeehh
Q 022263 169 KLFGVTTLD 177 (300)
Q Consensus 169 kviG~t~Ld 177 (300)
+++|+..++
T Consensus 137 r~~G~HFf~ 145 (503)
T TIGR02279 137 RVAGLHFFN 145 (503)
T ss_pred ceEEEeccC
Confidence 788874333
No 64
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.34 E-value=2.6e-06 Score=78.40 Aligned_cols=116 Identities=17% Similarity=0.249 Sum_probs=78.1
Q ss_pred EEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcCCCCCCC
Q 022263 32 AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAGVPRKP 110 (300)
Q Consensus 32 ~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~ag~~~~~ 110 (300)
.|+||+|++|++++..|++.+...+|..+|+........++.+......+.. .....+++++++++|+||++|+...-.
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~ 80 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW 80 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence 3899999999999999999885558999998653222112222211001111 111246778999999999999864333
Q ss_pred C-CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 111 G-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 111 g-~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
+ ..+..+..-|+.-.+.+.+...+.+-+ -+|+|..++
T Consensus 81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk--rlVytSS~~ 118 (280)
T PF01073_consen 81 GDYPPEEYYKVNVDGTRNVLEAARKAGVK--RLVYTSSIS 118 (280)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEEcCcc
Confidence 3 456678889999999999999886543 344555554
No 65
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.31 E-value=2.7e-06 Score=78.53 Aligned_cols=119 Identities=18% Similarity=0.313 Sum_probs=72.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHH-----Hhc----cccCC--------CcEEEEecCCc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAA-----DVG----HINTR--------SEVAGYMGNDQ 89 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~-----dl~----~~~~~--------~~v~~~~~t~d 89 (300)
.+||+|||+ |.+|..++..|+..++ +|+++|.++..- ... .+. ....+ ..++. +++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 77 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD 77 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence 358999996 9999999999999988 999999965211 100 010 11000 12332 345
Q ss_pred cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (300)
Q Consensus 90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~ 168 (300)
+ +++++||+||++.. ++..+.+.+.+.+.++++ ++++ +||.+... ++++.+.. -.+.
T Consensus 78 ~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~---~s~la~~~--~~~~ 135 (292)
T PRK07530 78 L-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSIS---ITRLASAT--DRPE 135 (292)
T ss_pred H-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC---HHHHHhhc--CCcc
Confidence 5 56899999999852 334555566667777764 6655 46665532 23333332 2346
Q ss_pred cEEEee
Q 022263 169 KLFGVT 174 (300)
Q Consensus 169 kviG~t 174 (300)
+++|+.
T Consensus 136 r~~g~h 141 (292)
T PRK07530 136 RFIGIH 141 (292)
T ss_pred cEEEee
Confidence 677753
No 66
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.29 E-value=4.6e-06 Score=73.87 Aligned_cols=101 Identities=21% Similarity=0.159 Sum_probs=62.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccC--CCcEEEEecCCccccccCCCCEEEEcC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
|||+|||++|++|++++..|...+. +|.++|+++.+. ...++.+... ........ + +..++++++|+||++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~-~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG-A-DNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE-e-ChHHHHhcCCEEEEEC
Confidence 6999997459999999999999886 899999865322 1222211110 00111111 2 3357889999999985
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
-. ..+.++++.+...-++.++|-++||.+
T Consensus 77 p~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 77 PW----------------DHVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred CH----------------HHHHHHHHHHHHhccCCEEEEeccCce
Confidence 31 223334444444334467888899987
No 67
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.26 E-value=6.6e-06 Score=81.78 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=79.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---cc--HHHH----hcccc-C--------CCcEEEEecCCcc
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--VAAD----VGHIN-T--------RSEVAGYMGNDQL 90 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g--~~~d----l~~~~-~--------~~~v~~~~~t~d~ 90 (300)
.||+|||+ |.+|..+|..++..|+ +|+++|+++. ++ ...+ +.... . ..+++. ++++
T Consensus 8 ~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~~ 81 (507)
T PRK08268 8 ATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEAL 81 (507)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence 58999996 9999999999999998 9999999753 11 0111 11100 0 012443 3466
Q ss_pred ccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022263 91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK 169 (300)
Q Consensus 91 ~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~k 169 (300)
+++++||+||.+. .++..+.+.+...+.+.++ ++++ +||.+..- ++++.... -.|+|
T Consensus 82 -~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~---i~~la~~~--~~p~r 139 (507)
T PRK08268 82 -ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLS---ITAIAAAL--KHPER 139 (507)
T ss_pred -HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhc--CCccc
Confidence 5688999999984 4677888888888999874 6655 56665432 23333332 24678
Q ss_pred EEEeeehh
Q 022263 170 LFGVTTLD 177 (300)
Q Consensus 170 viG~t~Ld 177 (300)
++|+..++
T Consensus 140 ~~G~hff~ 147 (507)
T PRK08268 140 VAGLHFFN 147 (507)
T ss_pred EEEEeecC
Confidence 88874433
No 68
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.25 E-value=1.4e-05 Score=74.49 Aligned_cols=120 Identities=20% Similarity=0.284 Sum_probs=73.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HH--------HhccccC---------CCcEEEEecCCc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AA--------DVGHINT---------RSEVAGYMGNDQ 89 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~--------dl~~~~~---------~~~v~~~~~t~d 89 (300)
++||+|||+ |.+|..++..|+..|+ +|++||.++.... .. .+.+... ...++. +++
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~ 75 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS 75 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence 469999995 9999999999999998 8999999753111 00 1111110 112332 357
Q ss_pred cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022263 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK 169 (300)
Q Consensus 90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~k 169 (300)
+.+++++||+|+.+.. .+....+.+...+.+..++..++ .||.... .+.++.+... .+.+
T Consensus 76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~---~~~~la~~~~--~~~~ 135 (308)
T PRK06129 76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSAL---LASAFTEHLA--GRER 135 (308)
T ss_pred HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCC---CHHHHHHhcC--Cccc
Confidence 7778999999999852 23444555666677777654444 4665532 2333443322 2445
Q ss_pred EEEe
Q 022263 170 LFGV 173 (300)
Q Consensus 170 viG~ 173 (300)
+++.
T Consensus 136 ~~~~ 139 (308)
T PRK06129 136 CLVA 139 (308)
T ss_pred EEEE
Confidence 5555
No 69
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.24 E-value=4.5e-06 Score=76.93 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=64.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-H----HHhccc-----cC--------CCcEEEEecCCcc
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-A----ADVGHI-----NT--------RSEVAGYMGNDQL 90 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~----~dl~~~-----~~--------~~~v~~~~~t~d~ 90 (300)
.||+|||+ |.+|..+|..|+..++ +|+++|+++..-. . .++... .. ...++. ++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~ 75 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL 75 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence 48999996 9999999999999887 8999999753111 0 011000 00 012332 3567
Q ss_pred ccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCc
Q 022263 91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVN 149 (300)
Q Consensus 91 ~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d 149 (300)
++++++||+||.+.. ++..+.+.+...+.++++ ++++ ++|...
T Consensus 76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt 119 (288)
T PRK09260 76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTST 119 (288)
T ss_pred HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCC
Confidence 788999999999852 334555666667777765 5544 445443
No 70
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.23 E-value=8.7e-06 Score=80.74 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=67.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHH-H--------hc---cccC--CCcEEEEecCCcccccc
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-D--------VG---HINT--RSEVAGYMGNDQLGQAL 94 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~-d--------l~---~~~~--~~~v~~~~~t~d~~~a~ 94 (300)
|||+|||+ |.+|+.+|..|+..|+ +|.++|+++...... + +. .... ...++. ++++++++
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~ 78 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV 78 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence 58999995 9999999999999998 999999965321110 1 00 0000 011332 35677889
Q ss_pred CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 022263 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~ 150 (300)
++||+||.+. .++..+.+++...+.+.++... ++.||.+..
T Consensus 79 ~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi 119 (495)
T PRK07531 79 AGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGF 119 (495)
T ss_pred cCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Confidence 9999999874 3445666777777888776443 347777764
No 71
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=98.22 E-value=9.5e-06 Score=76.53 Aligned_cols=169 Identities=15% Similarity=0.085 Sum_probs=100.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhc-cc--cCCCcEEEEecC----CccccccCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVG-HI--NTRSEVAGYMGN----DQLGQALED 96 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~-~~--~~~~~v~~~~~t----~d~~~a~~~ 96 (300)
.+++||.|+||+|++|++++..|...+. +|+.+|..... ....++. .. .....+..+.+. .++.+.+++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 3567999999999999999999998886 89999974311 0111111 00 000123332221 123455789
Q ss_pred CCEEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC------CcccHHHHHHHHHHhCCCCCC
Q 022263 97 SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP------VNSTVPIAAEVFKKAGTYNEK 168 (300)
Q Consensus 97 aDiVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP------~d~~~~i~~~~~~~~~~~~~~ 168 (300)
+|+||++|+....+. ....+....|+....++.+.+++.... .+|.+|.. .+. +. . .... ..|.
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~--~~-~---e~~~-~~p~ 162 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDL--PK-I---EERI-GRPL 162 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCC--CC-C---CCCC-CCCC
Confidence 999999998643221 233456778999999999999887544 33434311 110 00 0 1111 2344
Q ss_pred cEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263 169 KLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (300)
Q Consensus 169 kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h 204 (300)
...|.+.+...++....++..+++...++ ..+.|.+
T Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~ 199 (348)
T PRK15181 163 SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR 199 (348)
T ss_pred ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence 56677655555555555667788877776 4488875
No 72
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.21 E-value=1.5e-05 Score=74.19 Aligned_cols=119 Identities=18% Similarity=0.309 Sum_probs=71.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHH-hc---ccc--------CCCcEEEEecCCcccccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AAD-VG---HIN--------TRSEVAGYMGNDQLGQAL 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~d-l~---~~~--------~~~~v~~~~~t~d~~~a~ 94 (300)
.+||+|||+ |.+|..++..|+..++ +|+++|.+..... ..+ +. ... ....++. ++++++++
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAV 77 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHh
Confidence 468999996 9999999999999887 8999998652111 100 00 000 0011222 34666778
Q ss_pred CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~ 173 (300)
++||+||++.- .......++...+..+.+ ++++ +||....- ++++.+... .+.+++|+
T Consensus 78 ~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~---~~~l~~~~~--~~~~~ig~ 136 (311)
T PRK06130 78 SGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLP---ITAIAQAVT--RPERFVGT 136 (311)
T ss_pred ccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCC---HHHHHhhcC--CcccEEEE
Confidence 99999999852 233445566666777664 5544 45555432 233333322 24567776
No 73
>PLN02427 UDP-apiose/xylose synthase
Probab=98.21 E-value=1.1e-05 Score=77.00 Aligned_cols=117 Identities=14% Similarity=0.067 Sum_probs=72.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhcccc---CCCcEEEEec----CCccccccC
Q 022263 24 ESVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHIN---TRSEVAGYMG----NDQLGQALE 95 (300)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~---~~~~v~~~~~----t~d~~~a~~ 95 (300)
+..++|||.|+||+|++|++++..|... +. +|+.+|....... .+.... ....++.+.+ ..++.++++
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~--~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 85 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIK--HLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK 85 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhh--hhhccccccCCCCeEEEEcCCCChHHHHHHhh
Confidence 3456789999999999999999999987 45 8999987432111 111100 0112333221 123456788
Q ss_pred CCCEEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263 96 DSDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 96 ~aDiVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN 146 (300)
++|+||++|+...... ....+.+..|+.-...+.+..++.+ ..+|.+|.
T Consensus 86 ~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS 136 (386)
T PLN02427 86 MADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST 136 (386)
T ss_pred cCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence 9999999998642111 1223455678777777888777654 34555553
No 74
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.20 E-value=2.3e-05 Score=72.95 Aligned_cols=94 Identities=21% Similarity=0.370 Sum_probs=64.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcc--cc--------CCCcEEEEecCCccccccCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--IN--------TRSEVAGYMGNDQLGQALEDS 97 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~--~~--------~~~~v~~~~~t~d~~~a~~~a 97 (300)
++||+|+|| |.-|.++|..|+..++ ++.||.+++.. +.|+++ .+ .+..++ .++|+.+++++|
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~~--~~~i~~~~~N~~yLp~i~lp~~l~---at~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEEI--VAEINETRENPKYLPGILLPPNLK---ATTDLAEALDGA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHHH--HHHHHhcCcCccccCCccCCcccc---cccCHHHHHhcC
Confidence 579999996 9999999999999987 99999986532 223332 22 122333 367999999999
Q ss_pred CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEec
Q 022263 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS 145 (300)
Q Consensus 98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~t 145 (300)
|+|++..- ...++++++++..+- ++.+++.+|
T Consensus 73 d~iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 73 DIIVIAVP----------------SQALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred CEEEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEe
Confidence 99999852 233455555554332 455666654
No 75
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.19 E-value=5.7e-06 Score=76.43 Aligned_cols=118 Identities=22% Similarity=0.319 Sum_probs=72.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-H--------HHhccccC---------CCcEEEEecCCc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-A--------ADVGHINT---------RSEVAGYMGNDQ 89 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~--------~dl~~~~~---------~~~v~~~~~t~d 89 (300)
..||+|||+ |.+|..+|..|+..|+ +|+++|.+..... . .++.+... ...+.. +++
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~ 77 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TTN 77 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eCC
Confidence 358999996 9999999999999887 9999998652111 0 01111100 001222 345
Q ss_pred cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (300)
Q Consensus 90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~ 168 (300)
+ +++++||+||.+. .++.++...+...+.++.+ ++++ +||-.... ++++.+... .+.
T Consensus 78 ~-~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~---~~~l~~~~~--~~~ 135 (295)
T PLN02545 78 L-EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS---ITRLASATQ--RPQ 135 (295)
T ss_pred H-HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhcC--CCc
Confidence 4 6789999999984 3455666777777877764 6554 46665532 223333221 245
Q ss_pred cEEEe
Q 022263 169 KLFGV 173 (300)
Q Consensus 169 kviG~ 173 (300)
+++|+
T Consensus 136 r~~g~ 140 (295)
T PLN02545 136 QVIGM 140 (295)
T ss_pred ceEEE
Confidence 66666
No 76
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=98.18 E-value=2e-05 Score=73.45 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=81.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--cc--HHHHhccccCCCcEEEEec----CCccccccCCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG--VAADVGHINTRSEVAGYMG----NDQLGQALEDSD 98 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g--~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aD 98 (300)
..++|+|+||+|+||+.+...|+++|+ +|+--=+++. +. ...+|.... .+++.+.+ ...+++++++||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence 567999999999999999999999998 5554444332 22 244454332 12332221 234678999999
Q ss_pred EEEEcCCCCCCCCC-cchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 99 VVIIPAGVPRKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 99 iVIi~ag~~~~~g~-~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
.||++|....-... .-.+++.-.++-...+.+.+++.. ...-+|+|+...
T Consensus 81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~a 131 (327)
T KOG1502|consen 81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTA 131 (327)
T ss_pred EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHH
Confidence 99999976432222 234678889999999999999887 555666776554
No 77
>PLN02572 UDP-sulfoquinovose synthase
Probab=98.15 E-value=1.3e-05 Score=78.30 Aligned_cols=181 Identities=19% Similarity=0.193 Sum_probs=102.3
Q ss_pred CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---cc------------HHHHhccc--cCCCcEEE
Q 022263 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG------------VAADVGHI--NTRSEVAG 83 (300)
Q Consensus 21 ~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g------------~~~dl~~~--~~~~~v~~ 83 (300)
=++...+++||.|+||+|++|++++..|+..|. +|+++|.... .. ....+.+. .....++.
T Consensus 40 ~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~ 117 (442)
T PLN02572 40 GSSSSSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIEL 117 (442)
T ss_pred CCCccccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceE
Confidence 345556778999999999999999999999887 8999985211 00 00011000 00001222
Q ss_pred EecC-C---ccccccC--CCCEEEEcCCCCCCCC-C-cc---hhhhhhhHHHHHHHHHHHHhhCCCeEEEEec------C
Q 022263 84 YMGN-D---QLGQALE--DSDVVIIPAGVPRKPG-M-TR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS------N 146 (300)
Q Consensus 84 ~~~t-~---d~~~a~~--~aDiVIi~ag~~~~~g-~-~r---~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t------N 146 (300)
+.+. . ++.++++ ++|+||++|+....+- . +. ...+..|+.....+.+.+++.+....++.+| +
T Consensus 118 v~~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~ 197 (442)
T PLN02572 118 YVGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGT 197 (442)
T ss_pred EECCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCC
Confidence 2111 1 2334455 4899999986532211 1 11 2235679999999999998887655555443 1
Q ss_pred C---CcccHHH-HHHHH-HHh--CCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263 147 P---VNSTVPI-AAEVF-KKA--GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (300)
Q Consensus 147 P---~d~~~~i-~~~~~-~~~--~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h 204 (300)
| ++.. ++ ..+.. ... ....|...+|.+.+-...+....++..|++..-++ ..|+|.+
T Consensus 198 ~~~~~~E~-~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~ 262 (442)
T PLN02572 198 PNIDIEEG-YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR 262 (442)
T ss_pred CCCCCccc-ccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence 1 1100 00 00000 000 01234567888766555666667788888777776 4488876
No 78
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.13 E-value=5.7e-06 Score=63.20 Aligned_cols=94 Identities=21% Similarity=0.322 Sum_probs=61.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCC-CCEEEEE-ecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
||+|||+ |++|.+++..|...+. -.+|.++ +.++.+. .++.... .+... +.+..++++++|+||++.-
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~--~~~~~~~---~~~~~--~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKA--AELAKEY---GVQAT--ADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHH--HHHHHHC---TTEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHH--HHHHHhh---ccccc--cCChHHhhccCCEEEEEEC--
Confidence 7999995 9999999999998883 2388866 7754322 2333221 12222 1245688999999999852
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (300)
Q Consensus 108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP 147 (300)
| ..+.++++.+....++.++|-++||
T Consensus 71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 1 1245566666555578888887776
No 79
>PLN02206 UDP-glucuronate decarboxylase
Probab=98.12 E-value=2.8e-05 Score=76.03 Aligned_cols=113 Identities=16% Similarity=0.028 Sum_probs=72.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
+.|||.|+||+|+||++++..|.+.+. +|+.+|....... ..+.+......++...+ +-.+.++.++|+||++|+.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~-~~~~~~~~~~~~~~i~~-D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRK-ENVMHHFSNPNFELIRH-DVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccch-hhhhhhccCCceEEEEC-CccChhhcCCCEEEEeeee
Confidence 457999999999999999999999887 8999886321100 11111001112332221 1123457889999999975
Q ss_pred CCC--CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 107 PRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 107 ~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
... ...+..+.+..|+.....+.+.+++.. ..+|.+|
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~S 232 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTS 232 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEEC
Confidence 321 112345677889999999999988775 3555554
No 80
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.10 E-value=4.4e-05 Score=73.95 Aligned_cols=118 Identities=24% Similarity=0.288 Sum_probs=73.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC----------------CCcEEEEecCCcccc
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQ 92 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~~ 92 (300)
|||+|||. |.||..+|..|+..|+ +|+.+|+++.+.. ++..... ...++. ++++.+
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~v~--~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEKVD--KLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED 72 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHHHH--HhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence 68999995 9999999999999888 8999999653222 2222110 012332 346667
Q ss_pred ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEe-cCCCcccHHHHHHHHH
Q 022263 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIAAEVFK 160 (300)
Q Consensus 93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~~~i~~~~~~ 160 (300)
++++||+||++...|..+.. .-+...+.+..+.+.++- ++.+++.. |-|..+.-.+...+.+
T Consensus 73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~ 136 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILE 136 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHH
Confidence 89999999999887754321 234555666666666653 45555444 4455543334333333
No 81
>PLN00198 anthocyanidin reductase; Provisional
Probab=98.09 E-value=5.1e-05 Score=70.99 Aligned_cols=176 Identities=13% Similarity=0.069 Sum_probs=96.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEec----CCccccccCCCCEEE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVI 101 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiVI 101 (300)
.+++|.|+||+|++|++++..|++.+. +|++++++... ....++........+..+.+ ..++.+.++++|+||
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 356899999999999999999999887 88777665321 11111111100012222221 123456678999999
Q ss_pred EcCCCCCCCCCc-chhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcc-------cHHHHHHHH-----HHhCCCCCC
Q 022263 102 IPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS-------TVPIAAEVF-----KKAGTYNEK 168 (300)
Q Consensus 102 i~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~-------~~~i~~~~~-----~~~~~~~~~ 168 (300)
++|+.......+ ..+++..|+.....+.+.+.+...-..+|.+|.-... ....+.|-. ......+|.
T Consensus 86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~ 165 (338)
T PLN00198 86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPT 165 (338)
T ss_pred EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCcc
Confidence 999853211122 2345678999999999998876432244444321100 000000100 000012344
Q ss_pred cEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263 169 KLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (300)
Q Consensus 169 kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h 204 (300)
...|.+.+-..++....++..+++..-++ ..|.|.+
T Consensus 166 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS 202 (338)
T ss_pred chhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence 44555544444555556666777666665 3477875
No 82
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.06 E-value=2.6e-05 Score=72.60 Aligned_cols=105 Identities=11% Similarity=0.008 Sum_probs=69.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccCCCCEEEEcC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiVIi~a 104 (300)
|||.|+||+|++|++++..|...|+ +|+.++++..... .+.+. .++.+.+ ..++.++++++|+||.++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~~--~l~~~----~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKAS--FLKEW----GAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHhh--hHhhc----CCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 6999999999999999999999887 8998887542211 11111 1221111 124567899999999987
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
+.... ...+....|......+++.+++.+-+ .+|.+|
T Consensus 73 ~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S 109 (317)
T CHL00194 73 TSRPS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS 109 (317)
T ss_pred CCCCC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence 64211 12234556777788888888887654 344444
No 83
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=98.04 E-value=6.5e-05 Score=68.81 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=94.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEec----CCccccccCC--CCEE
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG----NDQLGQALED--SDVV 100 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~--aDiV 100 (300)
||.|+||+|++|.+++..|+..+...+++++|..... ....++... ..+..+.+ ..++.+++++ +|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 5899999999999999988876532378888863211 111122111 12222211 1234456666 8999
Q ss_pred EEcCCCCCC--CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC-----cccHHHHHHHHHHhCCCCCCcEEEe
Q 022263 101 IIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTVPIAAEVFKKAGTYNEKKLFGV 173 (300)
Q Consensus 101 Ii~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-----d~~~~i~~~~~~~~~~~~~~kviG~ 173 (300)
|++|+.... ........+..|......+++.+.+...+..++.+|... ....+ .++ .. ...+....|.
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~-~~e---~~-~~~~~~~Y~~ 152 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDA-FTE---TT-PLAPSSPYSA 152 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCC-cCC---CC-CCCCCCchHH
Confidence 999985321 112233456789988999999888775555565554311 00000 001 11 1334445566
Q ss_pred eehhHHHHHHHHHHHcCCCCCceEEE-EEecC
Q 022263 174 TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGH 204 (300)
Q Consensus 174 t~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h 204 (300)
+.....++-..+++..+++..-++.. ++|..
T Consensus 153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~ 184 (317)
T TIGR01181 153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY 184 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence 54445555555667777776666533 66754
No 84
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.04 E-value=1.4e-05 Score=67.56 Aligned_cols=90 Identities=20% Similarity=0.271 Sum_probs=59.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
|+||++||. |.+|+.++..|...++ +|..||+++.+. .++.+.. .+.. .++.++++++|+||.+.
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v--- 65 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSPEKA--EALAEAG----AEVA---DSPAEAAEQADVVILCV--- 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSHHHH--HHHHHTT----EEEE---SSHHHHHHHBSEEEE-S---
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccchhhh--hhhHHhh----hhhh---hhhhhHhhcccceEeec---
Confidence 689999995 9999999999999998 999999865322 2334322 3332 45678899999999984
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHH--HHhhC-CCeEEEEe
Q 022263 108 RKPGMTRDDLFNINAGIVKDLCSA--IAKYC-PNAIVNMI 144 (300)
Q Consensus 108 ~~~g~~r~dl~~~N~~i~~~i~~~--i~~~~-p~a~viv~ 144 (300)
.+.+.++++... +.... +..++|..
T Consensus 66 ------------~~~~~v~~v~~~~~i~~~l~~g~iiid~ 93 (163)
T PF03446_consen 66 ------------PDDDAVEAVLFGENILAGLRPGKIIIDM 93 (163)
T ss_dssp ------------SSHHHHHHHHHCTTHGGGS-TTEEEEE-
T ss_pred ------------ccchhhhhhhhhhHHhhccccceEEEec
Confidence 234556666665 55554 44455433
No 85
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.03 E-value=3.5e-05 Score=71.70 Aligned_cols=100 Identities=19% Similarity=0.344 Sum_probs=64.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhc--ccc------CCCcEEEEecCCccccccCCCCE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG--HIN------TRSEVAGYMGNDQLGQALEDSDV 99 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~--~~~------~~~~v~~~~~t~d~~~a~~~aDi 99 (300)
||||+|||+ |.+|+.++..|+..++ ++.++|+++.......-. +.. .+..+.. +++.+++++++|+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~ 74 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL 74 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence 689999995 9999999999999887 899999864322111100 000 0112222 2455567899999
Q ss_pred EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN 149 (300)
Q Consensus 100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d 149 (300)
||++... ..+.++.+.+..+ .|+.+++..+|.++
T Consensus 75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 9998531 1234455555555 35777887877654
No 86
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=98.03 E-value=7.2e-05 Score=70.35 Aligned_cols=171 Identities=15% Similarity=0.074 Sum_probs=96.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccC--CCCEEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE--DSDVVI 101 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~--~aDiVI 101 (300)
|+||.|+||+|++|++++..|...+. ..++++|.....+....+.+......+....+ ..+++++++ +.|+||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 46899999999999999999998875 24667776432222122221100011221111 122344555 489999
Q ss_pred EcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhC-------CC-eEEEEecCCCc------ccHHHHHHHHHHhCCC
Q 022263 102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVN------STVPIAAEVFKKAGTY 165 (300)
Q Consensus 102 i~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~-------p~-a~viv~tNP~d------~~~~i~~~~~~~~~~~ 165 (300)
++||..... .......+..|+.....+++.+.++. +. ..++.+|...- ...+ ++| ... .
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~-~~E---~~~-~ 154 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDF-FTE---TTP-Y 154 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCC-cCC---CCC-C
Confidence 999864321 11234567788988888998887642 12 24444443210 0000 011 111 3
Q ss_pred CCCcEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263 166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (300)
Q Consensus 166 ~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h 204 (300)
.+...+|.+.+...++...+++..+++..-++ ..++|.+
T Consensus 155 ~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~ 194 (355)
T PRK10217 155 APSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPY 194 (355)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence 34455666666666666667788887766665 4577865
No 87
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.02 E-value=4.8e-05 Score=66.57 Aligned_cols=97 Identities=21% Similarity=0.285 Sum_probs=63.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
||+++|+| +|++|+.++..+...++ |+.+-..+..+.....-... ...++. . ..++|.+.+|+||++.-
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--~~~i~~---~-~~~dA~~~aDVVvLAVP-- 69 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--GPLITG---G-SNEDAAALADVVVLAVP-- 69 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--cccccc---C-ChHHHHhcCCEEEEecc--
Confidence 68999999 59999999999999998 88887665432221111111 112332 2 33589999999999853
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
+..... +.+.+++.-.+-++|-.|||.+
T Consensus 70 ----------~~a~~~----v~~~l~~~~~~KIvID~tnp~~ 97 (211)
T COG2085 70 ----------FEAIPD----VLAELRDALGGKIVIDATNPIE 97 (211)
T ss_pred ----------HHHHHh----HHHHHHHHhCCeEEEecCCCcc
Confidence 233344 4444444334678888999964
No 88
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.01 E-value=4.1e-05 Score=73.63 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=66.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC------------CCcEEEEecCCccccccCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT------------RSEVAGYMGNDQLGQALED 96 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~------------~~~v~~~~~t~d~~~a~~~ 96 (300)
|||+|||+ |.||..+|..++. ++ +++.+|+++.+-. .++.... ....+. ..+++..++.++
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~kv~--~l~~g~~~~~e~~l~~~l~~~~~~l-~~t~~~~~~~~~ 73 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSRVA--MLNDRISPIVDKEIQQFLQSDKIHF-NATLDKNEAYRD 73 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHHHH--HHHcCCCCCCCcCHHHHHHhCCCcE-EEecchhhhhcC
Confidence 69999995 9999999987775 66 8999999753211 1111100 011121 123455677899
Q ss_pred CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe-cCCCcc
Q 022263 97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS 150 (300)
Q Consensus 97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~d~ 150 (300)
||+||++...|...... ..+...+++.++.|.+..|+.++|+- |-|..+
T Consensus 74 ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgt 123 (388)
T PRK15057 74 ADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGF 123 (388)
T ss_pred CCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCch
Confidence 99999998766322111 23445556666666654555555433 567764
No 89
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=97.99 E-value=4.2e-05 Score=70.62 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=71.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcCCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
|||.|+||+|++|++++..|...+. +|+.+|.+..... ++.+... ..+.. .....++.++++++|+||++++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~-~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDRR--NLEGLDV-EIVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCcccc--ccccCCc-eEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 5899999999999999999999887 8999998543211 1111110 01111 111123456788999999998754
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
.....+..+....|+.....+++.+.+.+-. .+|.+|
T Consensus 76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 112 (328)
T TIGR03466 76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS 112 (328)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence 2223344566778888888899988876533 344444
No 90
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=97.98 E-value=9e-05 Score=68.51 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=68.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhcccc-CCCcEEEEec----CCccccccCCCCEEEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHIN-TRSEVAGYMG----NDQLGQALEDSDVVII 102 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~-~~~~v~~~~~----t~d~~~a~~~aDiVIi 102 (300)
++|.|+||+|++|++++..|...|+ +|+.++.+.... ....+.... ....+..+.+ ...+.++++++|+||+
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 6899999999999999999999887 888887754321 111121110 0112222211 1235567889999999
Q ss_pred cCCCCCCC-CCcchhhhhhhHHHHHHHHHHHHhh
Q 022263 103 PAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKY 135 (300)
Q Consensus 103 ~ag~~~~~-g~~r~dl~~~N~~i~~~i~~~i~~~ 135 (300)
+|+..... .....+.+..|+.....+.+.+.+.
T Consensus 83 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~ 116 (322)
T PLN02662 83 TASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV 116 (322)
T ss_pred eCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 99854221 1122356778999999999988776
No 91
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.98 E-value=5e-05 Score=71.38 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=69.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-----CccccccCCCCEEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVVI 101 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~a~~~aDiVI 101 (300)
||||.|+||+|++|++++..|... +. +|+.+|..... ..++... ..+..+.++ ..+.++++++|+||
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~--~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDR--LGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHH--HHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 579999999999999999998875 55 89999864321 1112111 123322211 12234568999999
Q ss_pred EcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263 102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 102 i~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN 146 (300)
++|+....+ ..+....+..|+.....+++.+++.. ..+|.+|.
T Consensus 74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS 118 (347)
T PRK11908 74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST 118 (347)
T ss_pred ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 998753221 22333455667888888888888754 35555543
No 92
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=97.97 E-value=5.4e-06 Score=76.31 Aligned_cols=119 Identities=21% Similarity=0.243 Sum_probs=71.3
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEE----EecC----CccccccC--CCC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAG----YMGN----DQLGQALE--DSD 98 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~----~~~t----~d~~~a~~--~aD 98 (300)
|.|+||+|++|+.++..|+..+. .+|+++|.++. .....++........++. +.++ ..+..+++ +.|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 68999999999999999998765 58999999763 223334421111111211 1111 12456677 999
Q ss_pred EEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe----cCCCcc
Q 022263 99 VVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI----SNPVNS 150 (300)
Q Consensus 99 iVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~----tNP~d~ 150 (300)
+|+++|....-|- .+-.+.+..|+--.+.+++...+++-+-++.+- .||.++
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnv 137 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNV 137 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SH
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcH
Confidence 9999998643222 234566788999999999999998877766665 467773
No 93
>PLN02650 dihydroflavonol-4-reductase
Probab=97.95 E-value=0.00013 Score=68.79 Aligned_cols=116 Identities=13% Similarity=0.063 Sum_probs=72.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccc-cCCCcEEEEec----CCccccccCCCCEEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHI-NTRSEVAGYMG----NDQLGQALEDSDVVI 101 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~-~~~~~v~~~~~----t~d~~~a~~~aDiVI 101 (300)
.++|.|+||+|++|++++..|+..+. +|++++.+.... ...++... .....+..+.+ ...+.++++++|+||
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 35899999999999999999999887 888887754221 11122110 00011222211 123456788999999
Q ss_pred EcCCCCCCCCCc-chhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 102 IPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 102 i~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
++|+.......+ ..+.+..|+.....+.+.+.+.+.-..+|.+|
T Consensus 83 H~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S 127 (351)
T PLN02650 83 HVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS 127 (351)
T ss_pred EeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 999753211112 23567789999999999988765323455554
No 94
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=97.95 E-value=0.00011 Score=68.98 Aligned_cols=170 Identities=15% Similarity=0.107 Sum_probs=95.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccC--CCCEEEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE--DSDVVII 102 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~--~aDiVIi 102 (300)
|||.|+||+|++|++++..|...+. ..++.+|.....+....+.+......+..+.+ ..++.++++ ++|+||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 6899999999999999999988775 24666775321111111111100111221111 112344554 4899999
Q ss_pred cCCCCCC--CCCcchhhhhhhHHHHHHHHHHHHhhC-------CC-eEEEEecCCCcccH--------------HHHHHH
Q 022263 103 PAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVNSTV--------------PIAAEV 158 (300)
Q Consensus 103 ~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~-------p~-a~viv~tNP~d~~~--------------~i~~~~ 158 (300)
+|+.... +.....+.+..|+.....+++.+.++. .. ..+|.+|-. .+.. +.++|
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~-~vyg~~~~~~~~~~~~~~~~~~E- 157 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTD-EVYGDLPHPDEVENSEELPLFTE- 157 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecch-hhcCCCCccccccccccCCCccc-
Confidence 9986421 112235678889999999999988751 11 234444321 1000 00011
Q ss_pred HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (300)
Q Consensus 159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h 204 (300)
.. .+.|....|.+.....++-..+++..+++..-++ ..|.|.+
T Consensus 158 --~~-~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~ 201 (352)
T PRK10084 158 --TT-AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPY 201 (352)
T ss_pred --cC-CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCC
Confidence 11 1345566777766666666666777887766665 3477876
No 95
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.93 E-value=7.6e-05 Score=73.73 Aligned_cols=210 Identities=19% Similarity=0.254 Sum_probs=127.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEecC----CccccccCC--CCEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN----DQLGQALED--SDVV 100 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~--aDiV 100 (300)
..|.|+||+|++|+.+...++..+. ++|+++|.++. .....++.+.....+++.+.++ ...+.++++ .|+|
T Consensus 251 K~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~V 329 (588)
T COG1086 251 KTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIV 329 (588)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceE
Confidence 4899999999999999998888754 59999999763 2233445443212233333221 235677888 9999
Q ss_pred EEcCCCCCCCCCc--chhhhhhhHHHHHHHHHHHHhhCCCeEEEEec----CCCcccHHHHHHHHHHhCCCCCCcEEEee
Q 022263 101 IIPAGVPRKPGMT--RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS----NPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174 (300)
Q Consensus 101 Ii~ag~~~~~g~~--r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t----NP~d~~~~i~~~~~~~~~~~~~~kviG~t 174 (300)
+++|....-|-++ -.+-+..|+--.+++++...+++=+.++++-| ||.|+ .|.|
T Consensus 330 fHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNv--------------------mGaT 389 (588)
T COG1086 330 FHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNV--------------------MGAT 389 (588)
T ss_pred EEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchH--------------------hhHH
Confidence 9999876555443 34667889999999999999888777766653 66663 3333
Q ss_pred ehhHHHHHHHHHHHcC---CCCCce-EEEEEecCCCCceeeccCcC-cCCCC--CCHHH-------HHHHHHHHhchh--
Q 022263 175 TLDVVRAKTFYAGKAN---VNVAEV-NVPVVGGHAGITILPLFSQA-TPKAN--LADED-------IKALTKRTQDGG-- 238 (300)
Q Consensus 175 ~Lds~R~~~~la~~l~---v~~~~V-~~~v~G~h~g~t~vp~~S~~-~~~~~--~~~~~-------~~~i~~~v~~~g-- 238 (300)
..-...+-...++..+ ....-| .+-|+|.. | |.+|+|..- ..+++ +++.+ +.|-.+-|-+++
T Consensus 390 Kr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-G-SViPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlqA~a~ 467 (588)
T COG1086 390 KRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-G-SVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQAGAI 467 (588)
T ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-C-CCHHHHHHHHHcCCCccccCCCceeEEEEHHHHHHHHHHHHhh
Confidence 2112222222222221 111223 35699988 4 799998542 22221 22221 234444444444
Q ss_pred ---hhhhhhccCCCCCccchHHHHHHHHHHHHc
Q 022263 239 ---TEVVEAKAGKGSATLSMAYAGAIFADACLK 268 (300)
Q Consensus 239 ---~~i~~~~~gkg~t~~~~A~a~~~~i~ai~~ 268 (300)
.||+-+ -+|+..-+.++.++++.
T Consensus 468 ~~gGeifvl-------dMGepvkI~dLAk~mi~ 493 (588)
T COG1086 468 AKGGEIFVL-------DMGEPVKIIDLAKAMIE 493 (588)
T ss_pred cCCCcEEEE-------cCCCCeEHHHHHHHHHH
Confidence 333333 35777888899988855
No 96
>PLN02214 cinnamoyl-CoA reductase
Probab=97.93 E-value=0.00013 Score=68.76 Aligned_cols=111 Identities=14% Similarity=0.044 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH---HHHhccccCCCcEEEEec----CCccccccCCCCE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMG----NDQLGQALEDSDV 99 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~---~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDi 99 (300)
++++|.|+||+|++|++++..|+..|. +|+.+++...... ...+... ...+..+.+ ..++.++++++|+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~ 84 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDG 84 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCE
Confidence 456899999999999999999999887 8888877432111 1112111 012222211 1235567899999
Q ss_pred EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
||++|+... ....+.+..|+.-...+.+.+.+.... .+|.+|
T Consensus 85 Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~S 126 (342)
T PLN02214 85 VFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITS 126 (342)
T ss_pred EEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEec
Confidence 999998542 233456778999999999998876544 344333
No 97
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=97.92 E-value=0.00011 Score=69.15 Aligned_cols=172 Identities=15% Similarity=0.120 Sum_probs=92.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HH-HhccccCCCcEEEEec--C--CccccccCC--CCE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AA-DVGHINTRSEVAGYMG--N--DQLGQALED--SDV 99 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~-dl~~~~~~~~v~~~~~--t--~d~~~a~~~--aDi 99 (300)
.++|.|+||+|++|++++..|++.+. +|+.+|++..... .. .+.. . ..+..+.+ + .++.+.+++ .|+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNL-A--KKIEDHFGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhh-c--CCceEEEccCCCHHHHHHHHhhcCCCE
Confidence 36899999999999999999999887 8999987543211 11 1111 0 01111111 1 123344554 599
Q ss_pred EEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehh
Q 022263 100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD 177 (300)
Q Consensus 100 VIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Ld 177 (300)
||++|+.+... ..+....+..|+.....+.+.+.+.+....+|.+|...-.-..-...-.......++...+|.+..-
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~ 158 (349)
T TIGR02622 79 VFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKAC 158 (349)
T ss_pred EEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHH
Confidence 99999854221 1123456678888889999988766533355555542100000000000001113345566766544
Q ss_pred HHHHHHHHHHHc-------CCCCCceE-EEEEecC
Q 022263 178 VVRAKTFYAGKA-------NVNVAEVN-VPVVGGH 204 (300)
Q Consensus 178 s~R~~~~la~~l-------~v~~~~V~-~~v~G~h 204 (300)
..++...+++.+ +++...++ ..+.|..
T Consensus 159 ~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~ 193 (349)
T TIGR02622 159 AELVIASYRSSFFGVANFHGIKIASARAGNVIGGG 193 (349)
T ss_pred HHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence 445555555544 45444443 3466653
No 98
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=97.91 E-value=4.6e-05 Score=72.72 Aligned_cols=169 Identities=11% Similarity=0.026 Sum_probs=93.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--C--CccccccCCCCEEEE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N--DQLGQALEDSDVVII 102 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t--~d~~~a~~~aDiVIi 102 (300)
..|||.|+||+|++|++++..|...|+ +|+.+|+.... . +..... ......+ + .++.++++++|+||+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~---~~~~~~--~~~~~~~Dl~d~~~~~~~~~~~D~Vih 91 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-H---MSEDMF--CHEFHLVDLRVMENCLKVTKGVDHVFN 91 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-c---cccccc--cceEEECCCCCHHHHHHHHhCCCEEEE
Confidence 347999999999999999999999887 89999974321 0 000000 0111110 1 123345689999999
Q ss_pred cCCCCCCCC---CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCccc-HHHHH---HHHHHhC-CCCCCcEEEee
Q 022263 103 PAGVPRKPG---MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST-VPIAA---EVFKKAG-TYNEKKLFGVT 174 (300)
Q Consensus 103 ~ag~~~~~g---~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~-~~i~~---~~~~~~~-~~~~~kviG~t 174 (300)
+|+.....+ ......+..|......+++.+++...+.+ |.+|...-.- ..... .+..... ...|...+|.+
T Consensus 92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~-V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~s 170 (370)
T PLN02695 92 LAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRF-FYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLE 170 (370)
T ss_pred cccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEE-EEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHH
Confidence 987532111 12233467899999999999887765544 3343211000 00000 0000000 12344455555
Q ss_pred ehhHHHHHHHHHHHcCCCCCceEE-EEEecC
Q 022263 175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGH 204 (300)
Q Consensus 175 ~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h 204 (300)
.....++....++..+++..-++. .++|.+
T Consensus 171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 201 (370)
T PLN02695 171 KLATEELCKHYTKDFGIECRIGRFHNIYGPF 201 (370)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCccCCC
Confidence 554555544456667777666653 377865
No 99
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.91 E-value=8.6e-05 Score=70.79 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=55.0
Q ss_pred CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCC-----CCEEEEEecCCc---ccHHHHhcc--cc--------CCCcEE
Q 022263 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANT---PGVAADVGH--IN--------TRSEVA 82 (300)
Q Consensus 21 ~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~-----~~el~L~D~~~~---~g~~~dl~~--~~--------~~~~v~ 82 (300)
|-+-....+||+|||+ |..|.++|..|...+. ..++.||.+++. +..+.++++ .+ .+..+.
T Consensus 4 ~~~~~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~ 82 (365)
T PTZ00345 4 FQKLRCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIV 82 (365)
T ss_pred hhhcccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceE
Confidence 3444456789999995 9999999999998762 138999988653 123334442 21 223344
Q ss_pred EEecCCccccccCCCCEEEEcC
Q 022263 83 GYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 83 ~~~~t~d~~~a~~~aDiVIi~a 104 (300)
. ++|+.+++++||+||++.
T Consensus 83 ~---tsdl~eav~~aDiIvlAV 101 (365)
T PTZ00345 83 A---VSDLKEAVEDADLLIFVI 101 (365)
T ss_pred E---ecCHHHHHhcCCEEEEEc
Confidence 3 467778999999999975
No 100
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=97.90 E-value=0.0001 Score=75.56 Aligned_cols=169 Identities=14% Similarity=0.081 Sum_probs=98.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc----cccccCCCCE
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ----LGQALEDSDV 99 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~~a~~~aDi 99 (300)
.++|||.|+||+|++|++++..|... ++ +|+.+|....... ++... ..+..+.+. .| ++++++++|+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~--~~~~~---~~~~~~~gDl~d~~~~l~~~l~~~D~ 385 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAIS--RFLGH---PRFHFVEGDISIHSEWIEYHIKKCDV 385 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhh--hhcCC---CceEEEeccccCcHHHHHHHhcCCCE
Confidence 35679999999999999999999874 56 8999997542111 11110 122222111 11 2456789999
Q ss_pred EEEcCCCCCC--CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccH----HHHHHHHHH---hCCCCCCcE
Q 022263 100 VIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV----PIAAEVFKK---AGTYNEKKL 170 (300)
Q Consensus 100 VIi~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~----~i~~~~~~~---~~~~~~~kv 170 (300)
||++|+.... ......+.+..|+....++.+.+.++. . .+|.+|.. .+.. ....|-... .+.-++...
T Consensus 386 ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~-~vyg~~~~~~~~E~~~~~~~~p~~~p~s~ 462 (660)
T PRK08125 386 VLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTS-EVYGMCTDKYFDEDTSNLIVGPINKQRWI 462 (660)
T ss_pred EEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcch-hhcCCCCCCCcCccccccccCCCCCCccc
Confidence 9999885431 222345667889999999999998875 2 44444431 1000 001110000 000012235
Q ss_pred EEeeehhHHHHHHHHHHHcCCCCCceEEE-EEecC
Q 022263 171 FGVTTLDVVRAKTFYAGKANVNVAEVNVP-VVGGH 204 (300)
Q Consensus 171 iG~t~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h 204 (300)
.|.+.+-..++-...++..+++..-++.. |+|.+
T Consensus 463 Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 497 (660)
T PRK08125 463 YSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR 497 (660)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence 67765555566566677778877777644 77865
No 101
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.90 E-value=6.9e-05 Score=68.62 Aligned_cols=165 Identities=17% Similarity=0.112 Sum_probs=96.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC-CCcEEEEecCCccccccCCC-CEEEEcCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDS-DVVIIPAGV 106 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~a-DiVIi~ag~ 106 (300)
|+|.|+||+|++|++++..|.+.|+ +|+.+|.........+ .+... ...+.. .....+.+++. |.||++|+.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLTD---RDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeecccc---hHHHHHHHhcCCCEEEEcccc
Confidence 3599999999999999999999887 9999998543222111 11100 000110 01223455666 999999987
Q ss_pred CCCCCCcc---hhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccH-----HHHHHHHHHhCCCCCCcEEEeeehhH
Q 022263 107 PRKPGMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV-----PIAAEVFKKAGTYNEKKLFGVTTLDV 178 (300)
Q Consensus 107 ~~~~g~~r---~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~-----~i~~~~~~~~~~~~~~kviG~t~Lds 178 (300)
...++..+ .++...|+...+++++...+ +.-..++..| .....- ..+.|-. .. ..|....|.+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~~s-s~~~~~~~~~~~~~~E~~--~~-~~p~~~Yg~sK~~~ 149 (314)
T COG0451 75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVFAS-SVSVVYGDPPPLPIDEDL--GP-PRPLNPYGVSKLAA 149 (314)
T ss_pred CchhhhhhhCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEeC-CCceECCCCCCCCccccc--CC-CCCCCHHHHHHHHH
Confidence 65554433 24788999999999999998 3333333332 221100 0111110 11 12222356665555
Q ss_pred HHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263 179 VRAKTFYAGKANVNVAEVN-VPVVGGH 204 (300)
Q Consensus 179 ~R~~~~la~~l~v~~~~V~-~~v~G~h 204 (300)
.+.-...++..+++..-++ ..++|.+
T Consensus 150 E~~~~~~~~~~~~~~~ilR~~~vyGp~ 176 (314)
T COG0451 150 EQLLRAYARLYGLPVVILRPFNVYGPG 176 (314)
T ss_pred HHHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence 5555555556678888887 4588866
No 102
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.90 E-value=7.4e-05 Score=69.55 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=58.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
+.|||+|||+ |.+|.+++..|...++ +|.++|++.. .++.++++++|+||++.-
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp- 56 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS- 56 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC-
Confidence 4579999995 9999999999999988 9999998532 133467789999999842
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhh--CCCeEEEEecC
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISN 146 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~--~p~a~viv~tN 146 (300)
...++++++.+..+ .++.+++..|+
T Consensus 57 ---------------~~~~~~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 57 ---------------MKGVRPVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred ---------------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 12355556666543 45777777776
No 103
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.87 E-value=8.9e-05 Score=69.43 Aligned_cols=99 Identities=14% Similarity=0.352 Sum_probs=63.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcc--c------cCCCcEEEEecCCcccccc-CCCCE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--I------NTRSEVAGYMGNDQLGQAL-EDSDV 99 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~--~------~~~~~v~~~~~t~d~~~a~-~~aDi 99 (300)
|||+|||| |.+|+.++..|.+.+. +|.|+++++...+.+.-.+ . ..+..++. ++++.+++ .++|+
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~Dl 74 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNATC 74 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCCCE
Confidence 68999996 9999999999999886 8999998543222111111 1 01112333 34565666 58999
Q ss_pred EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHh-h-CCCeEEEEecCCCc
Q 022263 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-Y-CPNAIVNMISNPVN 149 (300)
Q Consensus 100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~-~-~p~a~viv~tNP~d 149 (300)
||++.- ..-+.++++.+.. + .++..++..+|-.+
T Consensus 75 iiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 75 IILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 999852 2334555555654 3 46777777888764
No 104
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.85 E-value=0.00017 Score=70.04 Aligned_cols=106 Identities=20% Similarity=0.221 Sum_probs=67.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC----------------CCcEEEEecCCccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLG 91 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~ 91 (300)
++||+|||. |.||..+|..|++.|+ +++.+|+++.+-.. ++.... ...+.. ++
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~--- 71 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TT--- 71 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ec---
Confidence 579999995 9999999999999987 99999997643222 221110 001211 22
Q ss_pred cccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEe-cCCCccc
Q 022263 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMI-SNPVNST 151 (300)
Q Consensus 92 ~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~-tNP~d~~ 151 (300)
..++||+||++...|.++.. ..+...+.+.++.|.++.+ +.++|+- |.|..+.
T Consensus 72 -~~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt 126 (415)
T PRK11064 72 -TPEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGAT 126 (415)
T ss_pred -ccccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHH
Confidence 24589999999988754331 2344556666677776654 4555444 5576643
No 105
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.84 E-value=0.00028 Score=68.71 Aligned_cols=109 Identities=14% Similarity=0.166 Sum_probs=67.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCC------------CcEEEEecCCcccccc
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR------------SEVAGYMGNDQLGQAL 94 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~------------~~v~~~~~t~d~~~a~ 94 (300)
++|||+||| .|+||..+|..|+. ++ +++.||+++.+- ..|+....+ ..+.. +++. +++
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~-~~--~V~g~D~~~~~v--e~l~~G~~~~~e~~~~~l~~~g~l~~---t~~~-~~~ 74 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGK-SR--QVVGFDVNKKRI--LELKNGVDVNLETTEEELREARYLKF---TSEI-EKI 74 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhc-CC--EEEEEeCCHHHH--HHHHCcCCCCCCCCHHHHHhhCCeeE---EeCH-HHH
Confidence 568999999 59999999999887 45 999999976432 233322110 01222 3444 578
Q ss_pred CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEE-ecCCCccc
Q 022263 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNM-ISNPVNST 151 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv-~tNP~d~~ 151 (300)
++||++|++.+.|.+... ..+..-+....+.|.++.+ ..++|+ -|-|..+.
T Consensus 75 ~~advvii~Vptp~~~~~------~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt 127 (425)
T PRK15182 75 KECNFYIITVPTPINTYK------QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCT 127 (425)
T ss_pred cCCCEEEEEcCCCCCCCC------CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcch
Confidence 999999999988854321 1233444444555555543 444443 35666643
No 106
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.84 E-value=0.0001 Score=69.61 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=65.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc--c---------CCCcEEEEecCCcccccc
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--N---------TRSEVAGYMGNDQLGQAL 94 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~--~---------~~~~v~~~~~t~d~~~a~ 94 (300)
+.+|||+|+|+ |.+|++++..|...+ +++++..++.. ..+++.. . .+..+.. ++|+.+++
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~ 75 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAA 75 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHH
Confidence 46789999996 999999999999877 36777764432 2222211 0 1112222 45777789
Q ss_pred CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN 149 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d 149 (300)
+++|+||++.- ...++++++++..+ .++..+|.++|-.+
T Consensus 76 ~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 76 NCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred hcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 99999999852 23456666666655 35777888888766
No 107
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.84 E-value=0.00026 Score=65.31 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=68.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC-----CCcEEE-EecCCccccccCCCCEEEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RSEVAG-YMGNDQLGQALEDSDVVII 102 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~-----~~~v~~-~~~t~d~~~a~~~aDiVIi 102 (300)
|||+|+|+ |.+|..++..|...+. ++.++++ ...-+ .+.+... ...... ....++.+++.+++|+||+
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKRAK--ALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHHHH--HHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 69999996 9999999999999887 8999998 32111 1221110 001100 0012344455689999999
Q ss_pred cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172 (300)
Q Consensus 103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG 172 (300)
+.-.+ -+.++++.+..+ .++.+++.+.|..+.. +.++. .+|++++++
T Consensus 75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~-----~~l~~--~~~~~~v~~ 122 (305)
T PRK12921 75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQL-----EQLEP--YFGRERVLG 122 (305)
T ss_pred Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChH-----HHHHH--hCCcccEEE
Confidence 85322 134444555554 3577788889998732 12222 266777774
No 108
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.83 E-value=0.00017 Score=67.85 Aligned_cols=100 Identities=24% Similarity=0.276 Sum_probs=62.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC-----CC-cE----EEEecCCccccccCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RS-EV----AGYMGNDQLGQALEDS 97 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~-----~~-~v----~~~~~t~d~~~a~~~a 97 (300)
+|||+|||+ |.||..++..|...|+ +|.++|+++.. . .+..... .. .. ..+..+++. ++++++
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~-~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 74 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG-D--ELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATA 74 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH-H--HHHhcCceeecCCCcceecccceeEeccCh-hhccCC
Confidence 579999995 9999999999999887 89999985321 1 1111100 00 00 001113444 568999
Q ss_pred CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcc
Q 022263 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNS 150 (300)
Q Consensus 98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~ 150 (300)
|+||++...+. ..++++.+... .++.+++..+|..+.
T Consensus 75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 99999863221 12334455554 457777778898773
No 109
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.83 E-value=0.00021 Score=60.56 Aligned_cols=93 Identities=27% Similarity=0.314 Sum_probs=65.3
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEEEEcCCC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiVIi~ag~ 106 (300)
|+|+||+|++|+.++..|.+.+. +|+++-+++.+.. + ...++.+.++ +++.++++++|.||.++|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~--~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAE--D------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHH--H------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhcc--c------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 78999999999999999999996 8999877644222 2 1133333221 2346789999999999976
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
+.+ .....+.+.+.+++.+.. .++++|
T Consensus 71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s 97 (183)
T PF13460_consen 71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS 97 (183)
T ss_dssp TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred hcc-----------cccccccccccccccccc-cceeee
Confidence 533 267788888888887644 344443
No 110
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=97.83 E-value=0.00017 Score=67.37 Aligned_cols=113 Identities=15% Similarity=0.215 Sum_probs=73.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec----CCccccccCCCCEEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG----NDQLGQALEDSDVVI 101 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiVI 101 (300)
.++|.|+||+|++|++++..|+..+...+|+++|.+..... ..++.. ..+..+.+ ..++.+++++.|+||
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 46899999999999999999988752237899987543211 111211 12222211 123456678999999
Q ss_pred EcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 102 i~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
++||....+ ..+..+.+..|+.....+.+.+.+.+.. .+|.+|
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 999864322 2233467788999999999998876543 444454
No 111
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.82 E-value=0.00011 Score=68.93 Aligned_cols=72 Identities=24% Similarity=0.294 Sum_probs=49.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc------c--CCCcEEEEecCCccccccCCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI------N--TRSEVAGYMGNDQLGQALEDSD 98 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~------~--~~~~v~~~~~t~d~~~a~~~aD 98 (300)
.+|||+|||+ |.+|..++..|+..++ +|.+||+++...+...-.+. . .+..+.. ++++.++++++|
T Consensus 3 ~~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD 76 (328)
T PRK14618 3 HGMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGAD 76 (328)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCC
Confidence 3689999995 9999999999999887 89999986432221111110 0 0111222 346667789999
Q ss_pred EEEEcC
Q 022263 99 VVIIPA 104 (300)
Q Consensus 99 iVIi~a 104 (300)
+||++.
T Consensus 77 ~Vi~~v 82 (328)
T PRK14618 77 FAVVAV 82 (328)
T ss_pred EEEEEC
Confidence 999985
No 112
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.81 E-value=0.00035 Score=64.28 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=61.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC---CCcEEE-EecCCccccccCCCCEEEEcC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---RSEVAG-YMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~---~~~v~~-~~~t~d~~~a~~~aDiVIi~a 104 (300)
|||+|+|+ |.+|..++..|.+.+. ++.++|.+...-. .+..... ...... ...+++.++ .+++|+||++.
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLD--ALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV 74 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence 68999996 9999999999999886 8999998532111 1111110 001110 011234434 48999999985
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcc
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNS 150 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~ 150 (300)
-.. -..++++.+..+ .++..++...|..+.
T Consensus 75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~ 105 (304)
T PRK06522 75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGH 105 (304)
T ss_pred ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence 321 123444445443 457788889999874
No 113
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=97.79 E-value=0.00014 Score=65.87 Aligned_cols=99 Identities=19% Similarity=0.225 Sum_probs=66.8
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCCCC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKP 110 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~~~ 110 (300)
|.|+||+|++|++++..|...+. +|+.++++...... +... .+....+ ....++++++|+||++|+.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence 57999999999999999998887 89999985432110 0000 1111111 12346789999999999875432
Q ss_pred CC----cchhhhhhhHHHHHHHHHHHHhhCCC
Q 022263 111 GM----TRDDLFNINAGIVKDLCSAIAKYCPN 138 (300)
Q Consensus 111 g~----~r~dl~~~N~~i~~~i~~~i~~~~p~ 138 (300)
+. ....+...|+...+.+.+.+.+....
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 21 22345677999999999999887643
No 114
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=0.00016 Score=66.45 Aligned_cols=164 Identities=18% Similarity=0.119 Sum_probs=104.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEE-EecCCcccccc--CCCCEEEEcC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAG-YMGNDQLGQAL--EDSDVVIIPA 104 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~--~~aDiVIi~a 104 (300)
|+|.|+||+|+|||+.+..|++.|+ +++.+|.-.. ..++.+-.... .+.+ .....-+.+.| ...|.||+.|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~---f~~gDi~D~~~L~~vf~~~~idaViHFA 75 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFK---FYEGDLLDRALLTAVFEENKIDAVVHFA 75 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCc---eEEeccccHHHHHHHHHhcCCCEEEECc
Confidence 6899999999999999999999998 9999998431 11111111000 1111 00000122222 4789999998
Q ss_pred CCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEE-----ecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehh
Q 022263 105 GVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-----ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD 177 (300)
Q Consensus 105 g~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv-----~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Ld 177 (300)
|...-+. +.-+.++..|+--...+.+.|.+.+.+-++.- +.+|... || +| .. ...|.+-.|-|.|-
T Consensus 76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~--PI-~E---~~-~~~p~NPYG~sKlm 148 (329)
T COG1087 76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTS--PI-SE---TS-PLAPINPYGRSKLM 148 (329)
T ss_pred cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCc--cc-CC---CC-CCCCCCcchhHHHH
Confidence 8532111 23456788999999999999999997766542 2345441 22 22 22 25577889999888
Q ss_pred HHHHHHHHHHHcCCCCCceEEE-EEecC
Q 022263 178 VVRAKTFYAGKANVNVAEVNVP-VVGGH 204 (300)
Q Consensus 178 s~R~~~~la~~l~v~~~~V~~~-v~G~h 204 (300)
..++.+.+++..+.+..-.+-+ +.|.|
T Consensus 149 ~E~iL~d~~~a~~~~~v~LRYFN~aGA~ 176 (329)
T COG1087 149 SEEILRDAAKANPFKVVILRYFNVAGAC 176 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEEecccccCC
Confidence 8888888988888655444433 66655
No 115
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=97.76 E-value=0.00036 Score=65.81 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=91.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecC----CccccccCCCCEE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGN----DQLGQALEDSDVV 100 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiV 100 (300)
..|||.|+||+|++|++++..|++.|. +|++++.+..... ..++.. ...+..+.+. .++.+++++.|+|
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 557999999999999999999999887 8888876532211 111211 1123322211 1244567889999
Q ss_pred EEcCCCCCCC---C-Ccchh-----hhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccH--------HHHHHH----H
Q 022263 101 IIPAGVPRKP---G-MTRDD-----LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV--------PIAAEV----F 159 (300)
Q Consensus 101 Ii~ag~~~~~---g-~~r~d-----l~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~--------~i~~~~----~ 159 (300)
|++|+..... . .+..+ .+..|+.....+.+.+.+...-..+|++|.-.-... ..+.|- .
T Consensus 84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~ 163 (353)
T PLN02896 84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI 163 (353)
T ss_pred EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence 9999864211 1 11122 223344667777887776532224554443110000 000110 0
Q ss_pred HH-hCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263 160 KK-AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (300)
Q Consensus 160 ~~-~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h 204 (300)
.. ....++....|.+.+...++....++..+++..-++ ..|+|.+
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~ 210 (353)
T PLN02896 164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF 210 (353)
T ss_pred HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence 00 000112225566655556666666777777665555 3467764
No 116
>PLN02778 3,5-epimerase/4-reductase
Probab=97.75 E-value=0.00036 Score=64.56 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=62.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
..|||.|+||+|++|++++..|...+. ++++...+ +.+.. .+. .++.+ .+.|+||++|+.
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~--------~~~~~---~v~-----~~l~~--~~~D~ViH~Aa~ 67 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGR--------LENRA---SLE-----ADIDA--VKPTHVFNAAGV 67 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCc--------cCCHH---HHH-----HHHHh--cCCCEEEECCcc
Confidence 347999999999999999999998887 77654221 11100 000 01111 268999999986
Q ss_pred CCCCC-----CcchhhhhhhHHHHHHHHHHHHhhCCC
Q 022263 107 PRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPN 138 (300)
Q Consensus 107 ~~~~g-----~~r~dl~~~N~~i~~~i~~~i~~~~p~ 138 (300)
...+. ....+.+..|......+++.+++.+..
T Consensus 68 ~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~ 104 (298)
T PLN02778 68 TGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV 104 (298)
T ss_pred cCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 53322 234567788999999999999887543
No 117
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.73 E-value=0.00012 Score=66.72 Aligned_cols=112 Identities=14% Similarity=0.070 Sum_probs=68.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCC--cEEEEecCCccccccCCCCEEEE
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVII 102 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~~~aDiVIi 102 (300)
..+.++|+|+||+|||||+++-.|+..++ +|...|..... ....++|..... .+.... .....++.+|-|+.
T Consensus 24 p~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ftg-~k~n~~~~~~~~~fel~~hd---v~~pl~~evD~Iyh 97 (350)
T KOG1429|consen 24 PSQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFTG-RKENLEHWIGHPNFELIRHD---VVEPLLKEVDQIYH 97 (350)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEeccccc-chhhcchhccCcceeEEEee---chhHHHHHhhhhhh
Confidence 34568999999999999999999999886 99999985421 112234433221 222221 12356899999999
Q ss_pred cCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263 103 PAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144 (300)
Q Consensus 103 ~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~ 144 (300)
.|.....++ .+-.+.+..|.--........++.+ +.++.+
T Consensus 98 LAapasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~a 139 (350)
T KOG1429|consen 98 LAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLA 139 (350)
T ss_pred hccCCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEe
Confidence 987543333 2334445555444444444444433 555544
No 118
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=97.71 E-value=9.9e-05 Score=68.18 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=63.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEEcCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV 106 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi~ag~ 106 (300)
|||.|+||+|++|++++..|...+ +++.+|.... ....|+.+. ..+.++++ +.|+||++|+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d~------------~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSNP------------EGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence 689999999999999999888776 4777776321 011122221 12234455 58999999986
Q ss_pred CCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 107 PRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 107 ~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
..... .........|+.....+++.+.+.+ ..+|.+|
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S 103 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS 103 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence 42211 1223334679999999999998875 3455443
No 119
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=97.71 E-value=0.00067 Score=62.97 Aligned_cols=171 Identities=13% Similarity=0.092 Sum_probs=93.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHHhccc-cCCCcEEEEec----CCccccccCCCCEEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHI-NTRSEVAGYMG----NDQLGQALEDSDVVI 101 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~dl~~~-~~~~~v~~~~~----t~d~~~a~~~aDiVI 101 (300)
.++|.|+||+|++|++++..|+..|. +|++.+++..... ...+... .....+..+.+ ..+++++++++|+||
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 46899999999999999999999887 8888776543211 1111110 00112222211 123456678899999
Q ss_pred EcCCCCCCC-C-CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccH--------HHHHHHHHHhCCCC-----
Q 022263 102 IPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV--------PIAAEVFKKAGTYN----- 166 (300)
Q Consensus 102 i~ag~~~~~-g-~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~--------~i~~~~~~~~~~~~----- 166 (300)
++||..... . ......+..|+.....+.+.+.++.....+|++|.-..... ..+.| .....
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E----~~~~~p~~~~ 158 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDE----TFFTNPSFAE 158 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCc----CCCCchhHhc
Confidence 999854211 1 11234567788888888888877532234444432111000 00011 00011
Q ss_pred -CCcEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263 167 -EKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (300)
Q Consensus 167 -~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h 204 (300)
+....|.+.+...++...+++..+++..-++ ..+.|..
T Consensus 159 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~ 198 (325)
T PLN02989 159 ERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI 198 (325)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence 1234555555555555555666677655554 4477754
No 120
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.68 E-value=0.00023 Score=67.29 Aligned_cols=71 Identities=18% Similarity=0.349 Sum_probs=48.4
Q ss_pred eEEEEcCCCChHHHHHHHHHhCC------CCCEEEEEecCC---cccHHHHhc--ccc--------CCCcEEEEecCCcc
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNP------LVSRLALYDIAN---TPGVAADVG--HIN--------TRSEVAGYMGNDQL 90 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~------~~~el~L~D~~~---~~g~~~dl~--~~~--------~~~~v~~~~~t~d~ 90 (300)
||+|||+ |..|.++|..|+..+ +..+|.||.+++ .......++ |.. .+..++. ++|+
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl 76 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL 76 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence 6999995 999999999999876 113999998743 112222222 211 1223443 4688
Q ss_pred ccccCCCCEEEEcC
Q 022263 91 GQALEDSDVVIIPA 104 (300)
Q Consensus 91 ~~a~~~aDiVIi~a 104 (300)
++++++||+||++.
T Consensus 77 ~eal~~ADiIIlAV 90 (342)
T TIGR03376 77 VEAAKGADILVFVI 90 (342)
T ss_pred HHHHhcCCEEEEEC
Confidence 88999999999984
No 121
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.68 E-value=0.00049 Score=68.96 Aligned_cols=116 Identities=19% Similarity=0.151 Sum_probs=70.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhcc-----cc--CCCcEEEEec--C--Cccccc
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGH-----IN--TRSEVAGYMG--N--DQLGQA 93 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~-----~~--~~~~v~~~~~--t--~d~~~a 93 (300)
....|.|+||+|++|..++..|+..|. +|++++++..+.. ..++.+ .. ....+..+.+ + .++.++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 345799999999999999999998887 8999888653221 111211 00 0012222211 1 234456
Q ss_pred cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
+.++|+||+++|............+..|......+++.+.+.+-. .||++|
T Consensus 157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS 207 (576)
T PLN03209 157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT 207 (576)
T ss_pred hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence 899999999998653321111223455777778888888776544 444444
No 122
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.66 E-value=0.00012 Score=58.77 Aligned_cols=111 Identities=22% Similarity=0.305 Sum_probs=65.9
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcccc--CCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~--~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
||+|+||+|.+|..++..|...+.++-+.+++.....|..+.-.+.. ....+... ..+. +.+.++|+||++.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~Dvvf~a~~-- 75 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVE--DADP-EELSDVDVVFLALP-- 75 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEE--ETSG-HHHTTESEEEE-SC--
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEe--ecch-hHhhcCCEEEecCc--
Confidence 79999999999999999999987776677777765344322211111 11122221 1233 56899999999843
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeh
Q 022263 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176 (300)
Q Consensus 108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~L 176 (300)
....+++++.+.+. ..++ +.+-.+. .+.++-++|+..+
T Consensus 76 --------------~~~~~~~~~~~~~~--g~~V--iD~s~~~-------------R~~~~~~~~~pev 113 (121)
T PF01118_consen 76 --------------HGASKELAPKLLKA--GIKV--IDLSGDF-------------RLDDDVPYGLPEV 113 (121)
T ss_dssp --------------HHHHHHHHHHHHHT--TSEE--EESSSTT-------------TTSTTSEEE-HHH
T ss_pred --------------hhHHHHHHHHHhhC--CcEE--EeCCHHH-------------hCCCCCCEEeCCc
Confidence 24456666666443 3333 5555541 2556677777544
No 123
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=97.66 E-value=0.00032 Score=65.35 Aligned_cols=113 Identities=19% Similarity=0.118 Sum_probs=68.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-cccH-HHHhccccCCCcEEEEec-CCc---cccccC--CCCEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGV-AADVGHINTRSEVAGYMG-NDQ---LGQALE--DSDVV 100 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~~g~-~~dl~~~~~~~~v~~~~~-t~d---~~~a~~--~aDiV 100 (300)
|||.|+||+|++|++++..|+..+. +|+++|... .... ...+.+... ..+..+.+ -+| +.++++ ++|+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGG-KHPTFVEGDIRNEALLTEILHDHAIDTV 77 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcC-CCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence 6899999999999999999998887 899888632 1111 111111110 01111111 112 233444 68999
Q ss_pred EEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 101 Ii~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
|++|+..... .....+.+..|+.....+++.+++.... .+|.+|
T Consensus 78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 123 (338)
T PRK10675 78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS 123 (338)
T ss_pred EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence 9998864321 1233467788999999999988876433 344443
No 124
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=97.66 E-value=0.00093 Score=61.98 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=65.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccc-cCCCcEEEEec----CCccccccCCCCEEEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI-NTRSEVAGYMG----NDQLGQALEDSDVVII 102 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~-~~~~~v~~~~~----t~d~~~a~~~aDiVIi 102 (300)
++|.|+||+|++|++++..|+..|. +|++...+... .....+... .....+..+.+ ...+.++++++|+||+
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 5899999999999999999999887 78765544322 111222111 01112333221 1234566889999999
Q ss_pred cCCCCCC-CCCcchhhhhhhHHHHHHHHHHHHhh
Q 022263 103 PAGVPRK-PGMTRDDLFNINAGIVKDLCSAIAKY 135 (300)
Q Consensus 103 ~ag~~~~-~g~~r~dl~~~N~~i~~~i~~~i~~~ 135 (300)
+|+.... ......+++..|+.....+.+.+.+.
T Consensus 84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 117 (322)
T PLN02986 84 TASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117 (322)
T ss_pred eCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence 9985321 11122345677888888888887765
No 125
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=97.63 E-value=0.00032 Score=65.80 Aligned_cols=156 Identities=9% Similarity=0.046 Sum_probs=86.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhc-ccc--CCCcEEEEec--C--CccccccCC--
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVG-HIN--TRSEVAGYMG--N--DQLGQALED-- 96 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~-~~~--~~~~v~~~~~--t--~d~~~a~~~-- 96 (300)
++|.|+||+|++|++++..|+..|. +|+++|+.... .....+. +.. ....+..+.+ + ..+.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 4899999999999999999999887 89999975421 1111111 000 0011222211 1 123445664
Q ss_pred CCEEEEcCCCCCCCC-C-cchhhhhhhHHHHHHHHHHHHhhCC-C-eEEEEecC------CCcccHHHHHHHHHHhCCCC
Q 022263 97 SDVVIIPAGVPRKPG-M-TRDDLFNINAGIVKDLCSAIAKYCP-N-AIVNMISN------PVNSTVPIAAEVFKKAGTYN 166 (300)
Q Consensus 97 aDiVIi~ag~~~~~g-~-~r~dl~~~N~~i~~~i~~~i~~~~p-~-a~viv~tN------P~d~~~~i~~~~~~~~~~~~ 166 (300)
.|+||++|+....+. . .....+..|..-...+++.+.+.+- + ..++.+|. +.+. + .+ ...+ +.
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~--~-~~---E~~~-~~ 151 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEI--P-QN---ETTP-FY 151 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCC--C-CC---CCCC-CC
Confidence 599999998643221 1 1223345576677888888877652 2 24444332 1110 0 00 1111 34
Q ss_pred CCcEEEeeehhHHHHHHHHHHHcCCCC
Q 022263 167 EKKLFGVTTLDVVRAKTFYAGKANVNV 193 (300)
Q Consensus 167 ~~kviG~t~Lds~R~~~~la~~l~v~~ 193 (300)
|....|.+.+...++....++..+++.
T Consensus 152 p~~~Y~~sK~~~e~~~~~~~~~~~~~~ 178 (343)
T TIGR01472 152 PRSPYAAAKLYAHWITVNYREAYGLFA 178 (343)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCce
Confidence 555666666666666666677777643
No 126
>PLN02583 cinnamoyl-CoA reductase
Probab=97.63 E-value=0.00087 Score=61.77 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=69.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH----HHHhccccCCCcEEEEec----CCccccccCCCCEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAGYMG----NDQLGQALEDSDVV 100 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~----~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiV 100 (300)
++|.|+||+|++|++++..|+.+|+ +|++.+.+..... ..++... ...++.+.+ ..++.+++.++|.|
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v 82 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL 82 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 4799999999999999999999987 8888876421111 1122110 112222211 12345778999999
Q ss_pred EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144 (300)
Q Consensus 101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~ 144 (300)
+..++.+........+.+..|+.-...+.+.+.+...-..+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~ 126 (297)
T PLN02583 83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFT 126 (297)
T ss_pred EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence 98765432211123456788999999999988776311234444
No 127
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=97.60 E-value=0.00023 Score=64.74 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=65.2
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCC--CEEEEcCCCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS--DVVIIPAGVP 107 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~a--DiVIi~ag~~ 107 (300)
||.|+||+|++|++++..|...+. ++++++... .|+.+. .++.++++++ |+||++++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~~------------~~~~~~~~~~~~d~vi~~a~~~ 61 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTDP------------EALERLLRAIRPDAVVNTAAYT 61 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCCH------------HHHHHHHHhCCCCEEEECCccc
Confidence 689999999999999999998887 898887631 233221 1233456655 9999999864
Q ss_pred CCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 108 RKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 108 ~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
..+. ......+..|......+++.+.+... .+|.+|
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 3221 12344567788888999988877653 344444
No 128
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.59 E-value=0.001 Score=68.33 Aligned_cols=177 Identities=13% Similarity=0.020 Sum_probs=93.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---ccccc--CCCCEE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL--EDSDVV 100 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~--~~aDiV 100 (300)
++|||.|+||+|++|++++..|...+.--+|+.+|..........+........++.+.+. .| ....+ .++|+|
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence 5679999999999999999999886432388888874211111111110001123332211 12 11222 689999
Q ss_pred EEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH-H--HHHhCCCCCCcEEEeee
Q 022263 101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-V--FKKAGTYNEKKLFGVTT 175 (300)
Q Consensus 101 Ii~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~-~--~~~~~~~~~~kviG~t~ 175 (300)
|++|+...... ....+....|+.....+.+.+++.+.-..+|.+|. +.+...--.. . ........|....|.+.
T Consensus 85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS-~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~sK 163 (668)
T PLN02260 85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVST-DEVYGETDEDADVGNHEASQLLPTNPYSATK 163 (668)
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc-hHHhCCCccccccCccccCCCCCCCCcHHHH
Confidence 99998653211 12235667888888999999887763334554542 1100000000 0 00000022334455555
Q ss_pred hhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263 176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (300)
Q Consensus 176 Lds~R~~~~la~~l~v~~~~V~-~~v~G~h 204 (300)
+...++-...++..+++..-++ ..|+|.+
T Consensus 164 ~~aE~~v~~~~~~~~l~~vilR~~~VyGp~ 193 (668)
T PLN02260 164 AGAEMLVMAYGRSYGLPVITTRGNNVYGPN 193 (668)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccCcC
Confidence 5555555555566666655555 4477765
No 129
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.57 E-value=0.00092 Score=64.04 Aligned_cols=149 Identities=23% Similarity=0.181 Sum_probs=82.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCC-cEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~-~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
||||.|||| |+||+.+|..|++.+. .+|++.|+...+ ..+.+..+..... .+.. .....+.+++++.|+||.++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~-~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDA-ADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecc-cChHHHHHHHhcCCEEEEeCC
Confidence 689999996 9999999999999885 599999996532 2222222111100 1111 112245678899999999875
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe--e----ehhHH
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV--T----TLDVV 179 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~--t----~Lds~ 179 (300)
.. -+..++ +.+.+.. .-++-.|+-.+.. +-+-+.++++| +.++ | -+++.
T Consensus 78 ~~------------~~~~i~----ka~i~~g--v~yvDts~~~~~~-~~~~~~a~~Ag------it~v~~~G~dPGi~nv 132 (389)
T COG1748 78 PF------------VDLTIL----KACIKTG--VDYVDTSYYEEPP-WKLDEEAKKAG------ITAVLGCGFDPGITNV 132 (389)
T ss_pred ch------------hhHHHH----HHHHHhC--CCEEEcccCCchh-hhhhHHHHHcC------eEEEcccCcCcchHHH
Confidence 32 223333 3333332 2344456554432 23333344433 4444 2 24444
Q ss_pred HHHHHHHHHcCCCCCceEEEEE--ecCC
Q 022263 180 RAKTFYAGKANVNVAEVNVPVV--GGHA 205 (300)
Q Consensus 180 R~~~~la~~l~v~~~~V~~~v~--G~h~ 205 (300)
-+.+ .++++.=...+++.++. |+|+
T Consensus 133 ~a~~-a~~~~~~~i~si~iy~g~~g~~~ 159 (389)
T COG1748 133 LAAY-AAKELFDEIESIDIYVGGLGEHG 159 (389)
T ss_pred HHHH-HHHHhhccccEEEEEEecCCCCC
Confidence 3344 44555436677776654 5884
No 130
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.57 E-value=0.00095 Score=62.22 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=69.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc-----cCCCcEEEEecCCccccccCCCCEEE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-----NTRSEVAGYMGNDQLGQALEDSDVVI 101 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~-----~~~~~v~~~~~t~d~~~a~~~aDiVI 101 (300)
.+|||+|+|+ |.+|..++..|...++ ++.+++.+.. .+...... .....+.....+++. ++...+|+||
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVL 77 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEE
Confidence 4589999996 9999999999999887 8999988642 11111100 000001000011222 3567899999
Q ss_pred EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (300)
Q Consensus 102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~ 173 (300)
++.-.. . ..+.++.+... .|++.++...|-.+. .+.+.. .+|++++++-
T Consensus 78 lavK~~------------~----~~~~~~~l~~~~~~~~~iv~lqNG~~~-----~e~l~~--~~~~~~v~~g 127 (313)
T PRK06249 78 VGLKTT------------A----NALLAPLIPQVAAPDAKVLLLQNGLGV-----EEQLRE--ILPAEHLLGG 127 (313)
T ss_pred EEecCC------------C----hHhHHHHHhhhcCCCCEEEEecCCCCc-----HHHHHH--HCCCCcEEEE
Confidence 985321 1 12333344433 478888888998873 122222 2677887754
No 131
>PRK06194 hypothetical protein; Provisional
Probab=97.54 E-value=0.0029 Score=57.48 Aligned_cols=159 Identities=14% Similarity=0.156 Sum_probs=86.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEecC-Cc---cccccC------
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQALE------ 95 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~------ 95 (300)
+++|.|+||+|++|++++..|+..|. +|+++|.+.. .....++... ...+..+.+. +| ++++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999887 8999998542 2222233221 1122222111 12 222222
Q ss_pred -CCCEEEEcCCCCCCC---CCcc---hhhhhhhHH----HHHHHHHHHHhhCCC-----eEEEEecCCCcccHHHHHHHH
Q 022263 96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPN-----AIVNMISNPVNSTVPIAAEVF 159 (300)
Q Consensus 96 -~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~-----a~viv~tNP~d~~~~i~~~~~ 159 (300)
..|+||.+||..... ..+. ...+..|.. ..+.+.+.+.+.+.+ +.+++++.-...
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~--------- 152 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL--------- 152 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---------
Confidence 479999999874321 1111 123445544 444455556655442 566655532221
Q ss_pred HHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe
Q 022263 160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG 202 (300)
Q Consensus 160 ~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G 202 (300)
. ..+....++.+..-...+...+++.++.....+++..+.
T Consensus 153 --~-~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~ 192 (287)
T PRK06194 153 --L-APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC 192 (287)
T ss_pred --c-CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 0 123333445543333445566677777666666655443
No 132
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.53 E-value=0.00074 Score=68.84 Aligned_cols=108 Identities=13% Similarity=0.105 Sum_probs=66.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHh--CCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-C---------ccccccCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKL--NPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---------QLGQALED 96 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~--~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---------d~~~a~~~ 96 (300)
|||.|+||+|++|++++..|.. .+. +|+.++++.......++........++.+.+. . ++ +.+++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~-~~l~~ 77 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADI-AELGD 77 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHH-HHhcC
Confidence 6899999999999999999984 444 89999985432222222111000122222111 1 12 22389
Q ss_pred CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeE
Q 022263 97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140 (300)
Q Consensus 97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~ 140 (300)
+|+||++|+... ......+....|+.-.+.+++.+.+.....+
T Consensus 78 ~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~ 120 (657)
T PRK07201 78 IDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAATF 120 (657)
T ss_pred CCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCCeE
Confidence 999999998642 2223345667789989999988887643333
No 133
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=97.53 E-value=0.00045 Score=64.66 Aligned_cols=109 Identities=15% Similarity=0.043 Sum_probs=66.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccc--cCCCcEEEEec--C--CccccccCC-
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHI--NTRSEVAGYMG--N--DQLGQALED- 96 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~--~~~~~v~~~~~--t--~d~~~a~~~- 96 (300)
+.++|.|+||+|++|++++..|...|. +|+++|..... .....+... .....+..+.+ + .++.+++++
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 82 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI 82 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence 457899999999999999999999887 89998874321 111111100 00111222211 1 123344554
Q ss_pred -CCEEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCC
Q 022263 97 -SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCP 137 (300)
Q Consensus 97 -aDiVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p 137 (300)
.|+||++|+...... ......+..|+.....+++.+.+...
T Consensus 83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~ 126 (340)
T PLN02653 83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ 126 (340)
T ss_pred CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence 599999998643221 12233456688888888888887764
No 134
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.51 E-value=0.00098 Score=64.13 Aligned_cols=119 Identities=20% Similarity=0.145 Sum_probs=72.1
Q ss_pred CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc----HHHHhccccCCCc-EEE-EecCCcccccc
Q 022263 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSE-VAG-YMGNDQLGQAL 94 (300)
Q Consensus 21 ~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g----~~~dl~~~~~~~~-v~~-~~~t~d~~~a~ 94 (300)
|.....+++||.|+||+|++|++++..|...+. +|++++++.... ...++........ +.. .....++.+++
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~ 130 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVL 130 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHH
Confidence 666667788999999999999999999998887 899998754211 1111111000111 111 10112234445
Q ss_pred C----CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 95 E----DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 95 ~----~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
+ ++|+||.+++.+... ..+.+..|......+.+.+++.+-. .+|.+|
T Consensus 131 ~~~~~~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS 181 (390)
T PLN02657 131 FSEGDPVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAK-HFVLLS 181 (390)
T ss_pred HHhCCCCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 5 599999988753211 1234556777778888888776543 344444
No 135
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.48 E-value=0.00087 Score=62.14 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=60.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~ 108 (300)
|||+|||. |.+|..++..|...++ +|.+||+++.+.. .+.+.. ........++.+.++++|+|+++.-.
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~~~--~l~~~g----~~~~~s~~~~~~~~~~~dvIi~~vp~-- 69 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDAVK--AMKEDR----TTGVANLRELSQRLSAPRVVWVMVPH-- 69 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHcC----CcccCCHHHHHhhcCCCCEEEEEcCc--
Confidence 68999995 9999999999999887 8999998754322 222211 11111011333456789999998421
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 022263 109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV 148 (300)
Q Consensus 109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~ 148 (300)
- .++++++.+...- ++.++|..||..
T Consensus 70 -------------~-~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 70 -------------G-IVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred -------------h-HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 1 3445555555553 567777777653
No 136
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.45 E-value=0.00064 Score=64.05 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=63.5
Q ss_pred ccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCC
Q 022263 17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED 96 (300)
Q Consensus 17 ~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~ 96 (300)
|.+.+.......++|+|||. |.+|+.+|..|...|. +|+.||...... .+. +. + +.++++++++
T Consensus 135 w~~~~~~~~l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~-~--~~~l~ell~~ 198 (330)
T PRK12480 135 WQAEIMSKPVKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LT-Y--KDSVKEAIKD 198 (330)
T ss_pred cccccCccccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hh-c--cCCHHHHHhc
Confidence 33333333456679999995 9999999999988777 999999854211 110 11 1 2356788999
Q ss_pred CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263 97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN 146 (300)
||+|+++.... ..+..++. .+.+....|++++|+++-
T Consensus 199 aDiVil~lP~t-----------~~t~~li~--~~~l~~mk~gavlIN~aR 235 (330)
T PRK12480 199 ADIISLHVPAN-----------KESYHLFD--KAMFDHVKKGAILVNAAR 235 (330)
T ss_pred CCEEEEeCCCc-----------HHHHHHHh--HHHHhcCCCCcEEEEcCC
Confidence 99999985321 11222221 122333347889988864
No 137
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=97.45 E-value=0.00064 Score=62.60 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=63.9
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCc-cccc-----cCCCCEEEEcC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ-LGQA-----LEDSDVVIIPA 104 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d-~~~a-----~~~aDiVIi~a 104 (300)
|.|+||+|++|++++..|...|. +.+.++|..........+.+.. +.......+ .++. +.++|+||++|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A 76 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLD----IADYMDKEDFLAQIMAGDDFGDIEAIFHEG 76 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhh----hhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence 78999999999999999998875 3577778743211100111110 000000001 1112 23799999999
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
+.+..........+..|......+.+.+.+.+. .+|..|
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S 115 (308)
T PRK11150 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS 115 (308)
T ss_pred eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence 854333333345677889888999998887653 344443
No 138
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.45 E-value=0.00078 Score=61.09 Aligned_cols=95 Identities=18% Similarity=0.284 Sum_probs=60.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCC--CCEEEEE-ecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~--~~el~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
|||++||. |.+|..++..|.+.++ ..+|+.+ |+++.+.. .+.+. .++. .++..++++++|+||++.
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~--~~~~~----g~~~---~~~~~e~~~~aDvVil~v- 69 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPARRD--VFQSL----GVKT---AASNTEVVKSSDVIILAV- 69 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH--HHHHc----CCEE---eCChHHHHhcCCEEEEEE-
Confidence 79999995 9999999999998875 3478888 76543222 22221 2222 234456788999999986
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN 149 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d 149 (300)
.| +.++++.+.+... .|+.++|..++...
T Consensus 70 ~~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 70 KP---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred Cc---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 12 2234444455444 35666666656554
No 139
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.44 E-value=0.00082 Score=60.96 Aligned_cols=96 Identities=14% Similarity=0.224 Sum_probs=60.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCC-CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~-~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
||||+|||+ |.+|..++..|.+.+.. .++.++|.++.... .+.+.. .+.. +++..+.++++|+||++.-
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~--~~~~~~---g~~~---~~~~~~~~~~advVil~v~- 71 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEKRA--ALAEEY---GVRA---ATDNQEAAQEADVVVLAVK- 71 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHHHH--HHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence 579999995 99999999998887631 37899998643222 222211 1221 2344566889999999852
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
...++++.+.+..+. +..++.++|-..
T Consensus 72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 122444555554443 456666777654
No 140
>PRK07680 late competence protein ComER; Validated
Probab=97.40 E-value=0.001 Score=60.73 Aligned_cols=97 Identities=14% Similarity=0.207 Sum_probs=62.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
|||+|||+ |.+|..++..|...+.. .++.++|+++.... .+.+.. + .+.. +.+..+.++++|+||++.-
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~--~~~~~~-~-g~~~---~~~~~~~~~~aDiVilav~- 71 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKAY--HIKERY-P-GIHV---AKTIEEVISQSDLIFICVK- 71 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHH--HHHHHc-C-CeEE---ECCHHHHHHhCCEEEEecC-
Confidence 58999995 99999999999887742 47999998653222 222211 1 2332 2344566899999999851
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN 149 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d 149 (300)
-..+.++.+.+..+ .++.+++-++|++.
T Consensus 72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 11234444555544 35678888888875
No 141
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.40 E-value=0.0027 Score=58.26 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=62.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
|+||+|||+ |.+|.+++..|...+.. .+|.++|.+... ....+.... . .+.. +++..+.++++|+||++..
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~~-~-~~~~---~~~~~e~~~~aDvVilavp 73 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDKY-P-TVEL---ADNEAEIFTKCDHSFICVP 73 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHHc-C-CeEE---eCCHHHHHhhCCEEEEecC
Confidence 579999995 99999999999887732 479999875421 112222211 1 1222 2345567899999999853
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN 149 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d 149 (300)
. ..+.++++.+..+- ++..+|.+.|-++
T Consensus 74 p----------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~ 102 (277)
T PRK06928 74 P----------------LAVLPLLKDCAPVLTPDRHVVSIAAGVS 102 (277)
T ss_pred H----------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 1 22455556665543 4567777777766
No 142
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=97.34 E-value=0.0018 Score=58.05 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=65.2
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--C---Ccccccc-CC
Q 022263 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N---DQLGQAL-ED 96 (300)
Q Consensus 23 ~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t---~d~~~a~-~~ 96 (300)
.+..+++||.|+||+|++|+.++..|++.+. +|+.+.++....... +.+ . ..+..+.+ + .++.+.+ .+
T Consensus 12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~-~--~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ-D--PSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred cccccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc-C--CceEEEEeeCCCCHHHHHHHhhcC
Confidence 4455678999999999999999999998886 787776543221111 111 0 01221111 1 1233456 68
Q ss_pred CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263 97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144 (300)
Q Consensus 97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~ 144 (300)
+|+||+++|.....+. .+.+..|..-...+++.+.+.... .++.+
T Consensus 86 ~d~vi~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~i 130 (251)
T PLN00141 86 SDAVICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILV 130 (251)
T ss_pred CCEEEECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEE
Confidence 9999998875422111 112234555566677777665443 34433
No 143
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=97.34 E-value=0.00021 Score=62.59 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=89.4
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEe----cCCccccccCCC--CEEEEcC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDS--DVVIIPA 104 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~a~~~a--DiVIi~a 104 (300)
|.|+||+|++|++++..|...+. +++-+...+......+... .+..+. ...++++.+++. |.||++|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~-----~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a 73 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKL-----NVEFVIGDLTDKEQLEKLLEKANIDVVIHLA 73 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHT-----TEEEEESETTSHHHHHHHHHHHTESEEEEEB
T ss_pred EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccc-----eEEEEEeeccccccccccccccCceEEEEee
Confidence 78999999999999999999987 6554444332221111111 111110 012344566666 9999999
Q ss_pred CCCCC--CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH--HHHHhCCCCCCcEEEeeehhHHH
Q 022263 105 GVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE--VFKKAGTYNEKKLFGVTTLDVVR 180 (300)
Q Consensus 105 g~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~--~~~~~~~~~~~kviG~t~Lds~R 180 (300)
+.... ....-.+.+..|+...+.+.+.+.+... ..++..+. ... |-... .+.....+.+....|.+.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~--y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~ 149 (236)
T PF01370_consen 74 AFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASV--YGDPDGEPIDEDSPINPLSPYGASKRAAEE 149 (236)
T ss_dssp SSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGG--GTSSSSSSBETTSGCCHSSHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccc-cccccccc-ccc--cccccccccccccccccccccccccccccc
Confidence 87531 1123456778899999999999999877 34444432 221 00000 00000000111223333333444
Q ss_pred HHHHHHHHcCCCCCceEE-EEEecC
Q 022263 181 AKTFYAGKANVNVAEVNV-PVVGGH 204 (300)
Q Consensus 181 ~~~~la~~l~v~~~~V~~-~v~G~h 204 (300)
+...++++.+++...++. .++|.+
T Consensus 150 ~~~~~~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 150 LLRDYAKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp HHHHHHHHHTSEEEEEEESEEESTT
T ss_pred ccccccccccccccccccccccccc
Confidence 455556666777777764 467765
No 144
>PLN02240 UDP-glucose 4-epimerase
Probab=97.32 E-value=0.001 Score=62.35 Aligned_cols=115 Identities=19% Similarity=0.155 Sum_probs=69.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhcccc--CCCcEEEEec--C--CccccccC--CC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHIN--TRSEVAGYMG--N--DQLGQALE--DS 97 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~--~~~~v~~~~~--t--~d~~~a~~--~a 97 (300)
.+||.|+||+|++|++++..|...+. +|+++|...... ....+.+.. ....+..+.+ + .++.++++ ++
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 45899999999999999999998886 899998643211 111111110 0111222211 1 12333343 68
Q ss_pred CEEEEcCCCCCC-CC-CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 98 DVVIIPAGVPRK-PG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 98 DiVIi~ag~~~~-~g-~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
|+||++|+.... +. ....+.+..|+.....+++.+.+..... ++.+|
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 131 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS 131 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 999999986421 11 2334567889988889998887765343 44444
No 145
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.31 E-value=0.0017 Score=59.75 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=49.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
+||++|| .|.+|+.+|..|...|+ ++..||+++.+. +..+.... ... ..+..++.+++|+||.+..
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~G----a~~---a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAG----ATV---AASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcC----Ccc---cCCHHHHHHhCCEEEEecC
Confidence 5899999 59999999999999998 999999976553 22233321 111 1234688999999999853
No 146
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=97.31 E-value=0.0013 Score=60.40 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=65.4
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccc----cCCCCEEEEcCCC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA----LEDSDVVIIPAGV 106 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a----~~~aDiVIi~ag~ 106 (300)
|.|+||+|++|++++..|...+. .+++++|..........+........+.. ...++.. +.++|+||++|+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~ 76 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC 76 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence 57999999999999999998884 26888886432211111111000000110 0111111 2589999999986
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
......+....+..|......+.+.+.+... .+|.+|
T Consensus 77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 113 (314)
T TIGR02197 77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS 113 (314)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence 4322223345667888888999998887653 355454
No 147
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.30 E-value=0.00055 Score=55.60 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=54.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
...+||+|||+ |.||.+++..|...++ +|.-+-.. ...-...+.+... .... .++++.++++|++|++..
T Consensus 8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~sr-s~~sa~~a~~~~~--~~~~----~~~~~~~~~aDlv~iavp 77 (127)
T PF10727_consen 8 AARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSR-SPASAERAAAFIG--AGAI----LDLEEILRDADLVFIAVP 77 (127)
T ss_dssp ----EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSC-HH-HHHHHHC--T--T---------TTGGGCC-SEEEE-S-
T ss_pred CCccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeC-Ccccccccccccc--cccc----cccccccccCCEEEEEec
Confidence 35689999996 9999999999999987 66655332 1112222333211 1111 244577899999999952
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhh---CCCeEEEEe--cCCCcccHH
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMI--SNPVNSTVP 153 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~--tNP~d~~~~ 153 (300)
+ ..+.+++++|..+ -|+.+++=. +-+++.+.+
T Consensus 78 -----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p 114 (127)
T PF10727_consen 78 -----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP 114 (127)
T ss_dssp -----C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH
T ss_pred -----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh
Confidence 1 1356788888776 245444433 235665544
No 148
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.30 E-value=0.002 Score=61.11 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=71.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEe----cCCccccccCCCCEEE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVI 101 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~----~t~d~~~a~~~aDiVI 101 (300)
++.++.|+||+|++|.++...|.+.+...||.++|..... ....|.... ....++... ...+...++.++ .|+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence 4568999999999999999999998866699999996531 111111110 111233221 123466789999 666
Q ss_pred EcCCCC-CCCCC-cchhhhhhhHHHHHHHHHHHHhhCCC
Q 022263 102 IPAGVP-RKPGM-TRDDLFNINAGIVKDLCSAIAKYCPN 138 (300)
Q Consensus 102 i~ag~~-~~~g~-~r~dl~~~N~~i~~~i~~~i~~~~p~ 138 (300)
++|..+ ..-.+ .|......|+.-.+.+.+.+.+.+-+
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~ 119 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK 119 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence 655433 22233 36666778999999999999887643
No 149
>PRK12320 hypothetical protein; Provisional
Probab=97.29 E-value=0.0016 Score=66.97 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=64.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~ 108 (300)
|||.|+||+|++|++++..|...++ +|+.+|..... ..+... ..+..-.....+.++++++|+||++|+...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~v-e~v~~Dl~d~~l~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPRV-DYVCASLRNPVLQELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCCc-eEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence 6999999999999999999998887 89999874321 111000 011110001123455789999999997531
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
.. ....|.....++++.+++.+. .+|.+|
T Consensus 73 --~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S 101 (699)
T PRK12320 73 --SA----PGGVGITGLAHVANAAARAGA--RLLFVS 101 (699)
T ss_pred --cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence 11 123577778888888877654 444444
No 150
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.28 E-value=0.0016 Score=60.93 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=72.0
Q ss_pred hHHHHHHHHHhCCCCCEEEEEecCCcc----------cH--HHH----hcccc---------CCCcEEEEecCCcccccc
Q 022263 40 IGQPLALLMKLNPLVSRLALYDIANTP----------GV--AAD----VGHIN---------TRSEVAGYMGNDQLGQAL 94 (300)
Q Consensus 40 VG~~~a~~L~~~~~~~el~L~D~~~~~----------g~--~~d----l~~~~---------~~~~v~~~~~t~d~~~a~ 94 (300)
||..+|..++..|+ +|+|+|.++.. +. ..+ +.... ...+++... +.+.++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~ 77 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL 77 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence 57888999999998 99999997621 11 000 00000 012344321 12356789
Q ss_pred CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~ 173 (300)
++||+||.++ .+|.++.+++..++.+.++ ++++ .||..... ++++..... .|+|++|+
T Consensus 78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~---~~~la~~~~--~p~r~~g~ 136 (314)
T PRK08269 78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFL---VTDLQRHVA--HPERFLNA 136 (314)
T ss_pred ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCC---HHHHHhhcC--CcccEEEE
Confidence 9999999984 5678889999999999875 6665 78877642 344444432 36788887
Q ss_pred e
Q 022263 174 T 174 (300)
Q Consensus 174 t 174 (300)
.
T Consensus 137 H 137 (314)
T PRK08269 137 H 137 (314)
T ss_pred e
Confidence 4
No 151
>PRK05865 hypothetical protein; Provisional
Probab=97.27 E-value=0.00087 Score=70.34 Aligned_cols=104 Identities=18% Similarity=0.110 Sum_probs=68.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcCCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
|||.|+||+|++|++++..|...|. +|+.+|...... +.. .. ..+.. .....++.++++++|+||++|+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~v-~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-SA-DFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-Cc-eEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 6899999999999999999998887 899998753210 110 00 01111 111123456788999999998753
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 022263 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148 (300)
Q Consensus 108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~ 148 (300)
. + ....|......+++.+.+.+.. .+|.+|.+.
T Consensus 73 ~-~------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~ 105 (854)
T PRK05865 73 G-R------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH 105 (854)
T ss_pred c-c------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence 2 1 3466887788888888776533 455566553
No 152
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.27 E-value=0.00078 Score=65.86 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=47.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
|||+||||.|.+|..++..|...++ ++.++|.++.... ++.... .+.. +++..++++++|+||++..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~--~~a~~~---gv~~---~~~~~e~~~~aDvVIlavp 67 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGK--EVAKEL---GVEY---ANDNIDAAKDADIVIISVP 67 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHH--HHHHHc---CCee---ccCHHHHhccCCEEEEecC
Confidence 6899998669999999999998887 8999998653221 111110 1221 2355678899999999863
No 153
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.27 E-value=0.0012 Score=60.88 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=46.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
+|||+|||. |.+|..++..|...++ +|.+||+++.... .+... .+.. +++++++++++|+||++.
T Consensus 2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~--~~~~~----g~~~---~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAVA--EVIAA----GAET---ASTAKAVAEQCDVIITML 66 (296)
T ss_pred CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHC----CCee---cCCHHHHHhcCCEEEEeC
Confidence 368999995 9999999999998887 8999998653322 12211 1111 235667789999999985
No 154
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.26 E-value=0.002 Score=59.15 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=44.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
|||+|||. |.+|..++..|...++ +|.++|.++.... .+.+.. .+.. .+++. +++++||+||++.
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~--~a~~~g---~~~~--~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCE--RAIERG---LVDE--ASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHCC---Cccc--ccCCH-hHhcCCCEEEEcC
Confidence 68999995 9999999999998887 8999998643211 111111 1111 12333 5689999999985
No 155
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.25 E-value=0.0015 Score=62.57 Aligned_cols=54 Identities=22% Similarity=0.442 Sum_probs=43.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
.++||+||||.|.+|..++..|...|+ +|.++|.+.. ++.++++++||+||++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav 150 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV 150 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence 457999999669999999999999887 8999997420 12346688999999986
No 156
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.23 E-value=0.0015 Score=64.51 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=62.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC--CCcEEEEecCCccccccC---CCCEEEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALE---DSDVVII 102 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~---~aDiVIi 102 (300)
|.+|+|||. |.+|.++|..|+..|+ +|.+||+++.+.. ++..... ...+.. ++++++.++ ++|+|++
T Consensus 1 ~~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~~~--~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEKTE--EFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEE
Confidence 458999995 9999999999999998 8999999654322 2222100 111222 345656654 5898888
Q ss_pred cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCC
Q 022263 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNP 147 (300)
Q Consensus 103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP 147 (300)
++- +.+.++++.+.+..+ .|+.++|..+|-
T Consensus 73 ~v~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 73 LIK---------------AGEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred EeC---------------ChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 742 223445555555544 467788888764
No 157
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.22 E-value=0.001 Score=61.65 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=47.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
|+||+|||. |.+|..++..|+..++ +|.+||+++.+.. ++.... ... ..++.+++++||+||++.
T Consensus 1 m~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~~~--~~~~~g----~~~---~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 1 MAAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQAVD--ALVDKG----ATP---AASPAQAAAGAEFVITML 65 (296)
T ss_pred CCeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence 359999995 9999999999999887 8999998654322 232211 111 234567889999999985
No 158
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.21 E-value=0.0021 Score=61.18 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=46.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
+||+|||. |.+|.+++..|...++ ++.++|.++.......-.... .+.. .++++++++++||+||++.
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~---~~~~--~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFG---VIDE--LAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCC---CCcc--cccCHHHHhcCCCEEEEeC
Confidence 37999995 9999999999999887 788898865432211111111 0111 1245667889999999985
No 159
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.20 E-value=0.0034 Score=56.07 Aligned_cols=99 Identities=10% Similarity=0.202 Sum_probs=58.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCC--CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
+.+||+|||+ |.+|.+++..+...+. ..+++.++.... ....++.+.. .+.. ++|+++.++++|+||++.
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEec
Confidence 3578999995 9999999998887653 334777775321 1122232211 1222 235567789999999984
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
-. ...+++++.+..+-++.++|.++.-.+
T Consensus 75 p~----------------~~~~~v~~~l~~~~~~~~vis~~~gi~ 103 (245)
T PRK07634 75 PP----------------SAHEELLAELSPLLSNQLVVTVAAGIG 103 (245)
T ss_pred CH----------------HHHHHHHHHHHhhccCCEEEEECCCCC
Confidence 21 123444444444333446666666555
No 160
>PLN02686 cinnamoyl-CoA reductase
Probab=97.19 E-value=0.0012 Score=62.80 Aligned_cols=108 Identities=11% Similarity=0.137 Sum_probs=66.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccc---c-CCCcEEEEec--C--CccccccCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHI---N-TRSEVAGYMG--N--DQLGQALED 96 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~---~-~~~~v~~~~~--t--~d~~~a~~~ 96 (300)
.++++|.|+||+|++|++++..|+..|. +|+++..+.... ...++... . ....+..+.+ + .++.+++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~ 128 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG 128 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence 4567999999999999999999999887 787765432211 11112110 0 0001222211 1 234567889
Q ss_pred CCEEEEcCCCCCCCCC--cchhhhhhhHHHHHHHHHHHHhh
Q 022263 97 SDVVIIPAGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKY 135 (300)
Q Consensus 97 aDiVIi~ag~~~~~g~--~r~dl~~~N~~i~~~i~~~i~~~ 135 (300)
+|.||++++.....+. ....+...|..-...+.+.+.+.
T Consensus 129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~ 169 (367)
T PLN02686 129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT 169 (367)
T ss_pred ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 9999998875422221 12344566888888899888775
No 161
>PRK12367 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.004 Score=55.94 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=65.6
Q ss_pred ccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCC
Q 022263 19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDS 97 (300)
Q Consensus 19 ~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~a 97 (300)
.+|.+...+.+++.|+||+|.+|.+++..|+..|. ++++.+.++........ +.. ...+.. .....+.++.+...
T Consensus 5 ~~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~-~~~~~~D~~~~~~~~~~~~~i 80 (245)
T PRK12367 5 DPMAQSTWQGKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESP-NEWIKWECGKEESLDKQLASL 80 (245)
T ss_pred chhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCC-CeEEEeeCCCHHHHHHhcCCC
Confidence 34566666667899999999999999999999887 89999886421111111 110 001111 11011233456789
Q ss_pred CEEEEcCCCCCCCCCcc---hhhhhhhHH----HHHHHHHHHHh
Q 022263 98 DVVIIPAGVPRKPGMTR---DDLFNINAG----IVKDLCSAIAK 134 (300)
Q Consensus 98 DiVIi~ag~~~~~g~~r---~dl~~~N~~----i~~~i~~~i~~ 134 (300)
|++|.+||.......+. .+.+..|.. +.+.+.+.+.+
T Consensus 81 DilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~ 124 (245)
T PRK12367 81 DVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALN 124 (245)
T ss_pred CEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999998743222222 234555654 44555555543
No 162
>PLN02253 xanthoxin dehydrogenase
Probab=97.17 E-value=0.0071 Score=54.75 Aligned_cols=158 Identities=16% Similarity=0.226 Sum_probs=81.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccccc------
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQAL------ 94 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~------ 94 (300)
+.+++.|+||+|.+|.+++..|+..|. +|+++|.+.... ...++.. ...+..+.. -+| .++++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 445899999999999999999999887 899999854221 1122211 111221110 112 22222
Q ss_pred -CCCCEEEEcCCCCCCC-C----Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHH
Q 022263 95 -EDSDVVIIPAGVPRKP-G----MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK 161 (300)
Q Consensus 95 -~~aDiVIi~ag~~~~~-g----~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~ 161 (300)
...|++|++||....+ + .+ -...+..|..-. +...+.+.+. ..+.+++++.....
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~ii~isS~~~~----------- 159 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPL-KKGSIVSLCSVASA----------- 159 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCceEEEecChhhc-----------
Confidence 3689999999874321 1 11 123445564433 3444444332 34556656532220
Q ss_pred hCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe
Q 022263 162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG 202 (300)
Q Consensus 162 ~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G 202 (300)
.+ .+....++.+..-...+.+.++++++-.--.|++..-|
T Consensus 160 ~~-~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg 199 (280)
T PLN02253 160 IG-GLGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPY 199 (280)
T ss_pred cc-CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeC
Confidence 11 22223455543333456667777775332233334344
No 163
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.16 E-value=0.0028 Score=58.91 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=47.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
.+||+|||+ |.+|..++..|...+...+|.++|.++.... .+..... .... ..+.+++++++|+||++..
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~--~a~~~g~--~~~~---~~~~~~~~~~aDvViiavp 75 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRA--RARELGL--GDRV---TTSAAEAVKGADLVILCVP 75 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHH--HHHhCCC--Ccee---cCCHHHHhcCCCEEEECCC
Confidence 369999995 9999999999998876458999998653211 1111111 0111 2344567899999999864
No 164
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.16 E-value=0.0014 Score=60.42 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=46.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
||+|||. |.+|+.++..|...++ +|.+||+++.+.. .+.+.. ... .++..+++++||+||++..
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~aDivi~~vp 64 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEVAD--ELLAAG----AVT---AETARQVTEQADVIFTMVP 64 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Ccc---cCCHHHHHhcCCEEEEecC
Confidence 6999995 9999999999999887 8999998653222 222221 111 2345678899999999853
No 165
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0024 Score=59.78 Aligned_cols=73 Identities=30% Similarity=0.392 Sum_probs=50.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcccHH-HHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
++||+|+||+|.||+.+...|.+.. .++++.++-..+..|+. .++..-.. .+... ..|. .+++++|+|++++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~~--~~~~-~~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPED--AADE-FVFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCccc--cccc-cccccCCEEEEeCc
Confidence 4799999999999999999999853 46778888776655554 44443221 11110 1222 45789999999987
No 166
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.15 E-value=0.005 Score=58.71 Aligned_cols=110 Identities=21% Similarity=0.295 Sum_probs=69.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc------ccHH------HH--hccccCCCcEEEEecCCccccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT------PGVA------AD--VGHINTRSEVAGYMGNDQLGQA 93 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~------~g~~------~d--l~~~~~~~~v~~~~~t~d~~~a 93 (300)
.++|+||| -|+||..+|-.++..|. +++-+|+++. .|+. +| +.......+++. |+|. +.
T Consensus 9 ~~~I~ViG-LGYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~ 81 (436)
T COG0677 9 SATIGVIG-LGYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EE 81 (436)
T ss_pred ceEEEEEc-cccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hh
Confidence 47999999 59999999999999998 8999999752 1210 11 111111224554 5676 55
Q ss_pred cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe--cCCCcc
Q 022263 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNS 150 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~ 150 (300)
++.||++||++-.|.+... +-.+..+.+-++.|.++=.++=++++ |-|..+
T Consensus 82 l~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT 134 (436)
T COG0677 82 LKECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGT 134 (436)
T ss_pred cccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence 7899999999877754421 12344455566666665444433333 666664
No 167
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.15 E-value=0.0016 Score=59.68 Aligned_cols=67 Identities=10% Similarity=0.230 Sum_probs=46.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCC--CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
+||++||+ |+||.+++..|.+.++ ..+|+.+|+++.. ...+.+.. .++. +++..+.+++||+||++.
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~---g~~~---~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKY---GITI---TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhc---CcEE---eCCcHHHHhhCCEEEEEe
Confidence 58999995 9999999999998875 3479999875432 22222211 1222 234456789999999985
No 168
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.14 E-value=0.0037 Score=57.28 Aligned_cols=98 Identities=15% Similarity=0.248 Sum_probs=59.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCC--CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
.|||+|||+ |.+|.+++..|...+. ..+|.++|++..+ ...++.... .++. +++..+..++||+||++.-
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~-~~~~l~~~~---g~~~---~~~~~e~~~~aDvVilav~ 74 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNET-RLQELHQKY---GVKG---THNKKELLTDANILFLAMK 74 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCHH-HHHHHHHhc---CceE---eCCHHHHHhcCCEEEEEeC
Confidence 479999995 9999999999998762 2478888874321 122332211 1222 2344567899999999852
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN 149 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d 149 (300)
|. .+.++.+.+..+ .++.++|.+.+-+.
T Consensus 75 ----p~------------~~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 75 ----PK------------DVAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred ----HH------------HHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 11 122333444443 35667776656554
No 169
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.12 E-value=0.0042 Score=58.08 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=61.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
...++|+|+|. |.||+.++..|...|. ++..||....... ... .+....++++.+++||+|+++..
T Consensus 134 l~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~~--~~~---------~~~~~~~l~e~l~~aDvvv~~lP 199 (312)
T PRK15469 134 REDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSWP--GVQ---------SFAGREELSAFLSQTRVLINLLP 199 (312)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCCC--Cce---------eecccccHHHHHhcCCEEEECCC
Confidence 34569999995 9999999999998887 8999997432110 000 00112356788999999999853
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
.. ..+..++. .+.+....|++++|+++
T Consensus 200 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 200 NT-----------PETVGIIN--QQLLEQLPDGAYLLNLA 226 (312)
T ss_pred CC-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence 21 22333332 34455556899999885
No 170
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.09 E-value=0.0037 Score=57.97 Aligned_cols=91 Identities=14% Similarity=0.252 Sum_probs=56.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCC---CCEEEEcCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPAG 105 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~---aDiVIi~ag 105 (300)
|||+|||. |.+|+.++..|...++ +|..||.++.+.. .+.+.. ... ..++++.+++ +|+||++..
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~~~--~~~~~g----~~~---~~s~~~~~~~~~~advVi~~vp 68 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEAVD--VAGKLG----ITA---RHSLEELVSKLEAPRTIWVMVP 68 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEec
Confidence 58999995 9999999999999887 8999998653322 222211 121 2344555554 689998743
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN 146 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN 146 (300)
.+ +.++++++.+... .++.++|..|+
T Consensus 69 ~~---------------~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 69 AG---------------EVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred Cc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence 11 2233333444433 35667777643
No 171
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.07 E-value=0.0046 Score=54.13 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~ 63 (300)
+..||+|+|+ |.+|+.++..|+..|+ ++|+|+|.+
T Consensus 20 ~~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD 54 (200)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 3458999996 9999999999999986 589999996
No 172
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.07 E-value=0.0022 Score=60.45 Aligned_cols=68 Identities=29% Similarity=0.382 Sum_probs=47.0
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263 23 SESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI 101 (300)
Q Consensus 23 ~~~~~~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI 101 (300)
......++|+|||. |.+|..+|..|+. .+. +|..+|....... .. .+.. .+++++++++||+|+
T Consensus 141 ~~~l~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~----~~-----~~~~---~~~l~ell~~aDvIv 205 (332)
T PRK08605 141 SRSIKDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAKA----AT-----YVDY---KDTIEEAVEGADIVT 205 (332)
T ss_pred cceeCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHhH----Hh-----hccc---cCCHHHHHHhCCEEE
Confidence 33456679999995 9999999998843 344 8999987542211 11 1111 236778899999999
Q ss_pred EcCC
Q 022263 102 IPAG 105 (300)
Q Consensus 102 i~ag 105 (300)
++..
T Consensus 206 l~lP 209 (332)
T PRK08605 206 LHMP 209 (332)
T ss_pred EeCC
Confidence 9863
No 173
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.07 E-value=0.0026 Score=59.98 Aligned_cols=98 Identities=21% Similarity=0.327 Sum_probs=62.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
+...++|+|||. |.+|+.+|..|...|. +|..||....... +... ... + .++++.+++||+|+++.
T Consensus 147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--~~~~-----~~~-~---~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 147 DVYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEA--EKEL-----GAE-Y---RPLEELLRESDFVSLHV 212 (333)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhh--HHHc-----CCE-e---cCHHHHHhhCCEEEEeC
Confidence 445679999995 9999999999988887 8999998542211 1111 111 1 25678899999999986
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN 149 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d 149 (300)
-.. + .+..++.+ +.+....|++++|+++ ..+|
T Consensus 213 P~t--~---------~T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd 246 (333)
T PRK13243 213 PLT--K---------ETYHMINE--ERLKLMKPTAILVNTARGKVVD 246 (333)
T ss_pred CCC--h---------HHhhccCH--HHHhcCCCCeEEEECcCchhcC
Confidence 321 1 11222211 2344445799999985 4556
No 174
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.06 E-value=0.0042 Score=51.16 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=68.2
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcccc--CC---CcEEEEecCCccccccCCCCEEEEcCC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TR---SEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~--~~---~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
|+|+|+ |.+|..+|..|.+.+. ++.|++..+ ..+.+.-.... .. ..+.......+..+..+..|+||++.-
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 789996 9999999999999887 899999854 22211111110 01 011111101111235789999999853
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~ 173 (300)
.. . ..+..+.++.+. |++.++..-|=.+. . +.++.. +|++++++-
T Consensus 77 a~------------~----~~~~l~~l~~~~~~~t~iv~~qNG~g~----~-~~l~~~--~~~~~v~~g 122 (151)
T PF02558_consen 77 AY------------Q----LEQALQSLKPYLDPNTTIVSLQNGMGN----E-EVLAEY--FPRPRVLGG 122 (151)
T ss_dssp GG------------G----HHHHHHHHCTGEETTEEEEEESSSSSH----H-HHHHCH--STGSGEEEE
T ss_pred cc------------c----hHHHHHHHhhccCCCcEEEEEeCCCCc----H-HHHHHH--cCCCcEEEE
Confidence 21 1 244566677665 67788888898873 2 333322 567788744
No 175
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.06 E-value=0.0033 Score=57.14 Aligned_cols=90 Identities=13% Similarity=0.253 Sum_probs=56.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
.|||+|||+ |.+|++++..|.+.+.. .+++.+|.++.. + .... ..+..+.++++|+||++.-
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEeC
Confidence 479999995 99999999999987743 358888875421 0 1111 1234466789999999841
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
| ..+.++.+.+..+-++..+|.+.+-+.
T Consensus 67 ----p------------~~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 67 ----P------------DLAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred ----H------------HHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 1 224445555554323335556666655
No 176
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.04 E-value=0.0052 Score=54.76 Aligned_cols=114 Identities=19% Similarity=0.290 Sum_probs=65.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc---cccc-------c
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ---LGQA-------L 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d---~~~a-------~ 94 (300)
.+++.|+||+|.+|++++..|++.|. +|++++.++.. ....++.+.. ..+..+... +| .+++ +
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999887 89999986531 1222333221 122221111 11 1112 2
Q ss_pred CCCCEEEEcCCCCCC-C--C---CcchhhhhhhHHH----HHHHHHHHHhhCCCeEEEEec
Q 022263 95 EDSDVVIIPAGVPRK-P--G---MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~-~--g---~~r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~t 145 (300)
...|+||+++|.... + . +...+.+..|..- .+.+.+.+.+.++.+.++++|
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s 143 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG 143 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence 358999999986421 1 1 1122334456554 566666663334445555554
No 177
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.04 E-value=0.0014 Score=56.09 Aligned_cols=108 Identities=24% Similarity=0.361 Sum_probs=65.2
Q ss_pred ccccc--cccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcc
Q 022263 13 AKPAG--ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL 90 (300)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~ 90 (300)
.+-.| ...+........+|+|+|. |.+|+.+|..+..-|. +|+.+|....... ...+. .+.. .++
T Consensus 19 ~~~~W~~~~~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~~----~~l 85 (178)
T PF02826_consen 19 RNGEWASRERFPGRELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVEY----VSL 85 (178)
T ss_dssp HTTBHHHHTTTTBS-STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEEE----SSH
T ss_pred HcCCCCCCcCCCccccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----ccee----eeh
Confidence 33445 3344455556789999995 9999999999998887 9999998654222 11111 1221 367
Q ss_pred ccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263 91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 91 ~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN 146 (300)
++.++.||+|+++.... + +++. ++ |. +.+....+++++|+++-
T Consensus 86 ~ell~~aDiv~~~~plt--~-~T~~-li--~~-------~~l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 86 DELLAQADIVSLHLPLT--P-ETRG-LI--NA-------EFLAKMKPGAVLVNVAR 128 (178)
T ss_dssp HHHHHH-SEEEE-SSSS--T-TTTT-SB--SH-------HHHHTSTTTEEEEESSS
T ss_pred hhhcchhhhhhhhhccc--c-ccce-ee--ee-------eeeeccccceEEEeccc
Confidence 78899999999986421 1 1111 11 22 22334457899999864
No 178
>PRK08267 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.0022 Score=57.46 Aligned_cols=35 Identities=37% Similarity=0.608 Sum_probs=30.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
|+++.|+||+|.+|..++..|++.|. +|+++|.+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW--RVGAYDINE 35 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 35799999999999999999999887 899999754
No 179
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0049 Score=56.26 Aligned_cols=97 Identities=18% Similarity=0.273 Sum_probs=65.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
++||++||+ |+||.+++..|...+.. .+|...|.+..+.. ++.+.. + +.. ++|..++.+++|+||++.
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~~-g--~~~---~~~~~~~~~~advv~Lav- 70 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAEY-G--VVT---TTDNQEAVEEADVVFLAV- 70 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHHc-C--Ccc---cCcHHHHHhhCCEEEEEe-
Confidence 579999996 99999999999998832 57888877543222 333322 1 111 345567889999999986
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
|| ..+.++.++++...++-++|-+.=.+.
T Consensus 71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~ 99 (266)
T COG0345 71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS 99 (266)
T ss_pred ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence 33 336677777776445666666655554
No 180
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.03 E-value=0.013 Score=54.58 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=67.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHH------HhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA------DVGHINTRSEVAGYMGNDQLGQALEDSDVVI 101 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~------dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI 101 (300)
.|||+|+|+ |.||+.++..|...|. ++.|++.....-.++ -+.+......+... ..+ .+.....|+||
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~--~~~-~~~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIP--AET-ADAAEPIHRLL 75 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccC--CCC-cccccccCEEE
Confidence 479999996 9999999999998886 899999843111111 01000000011110 111 12346789999
Q ss_pred EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (300)
Q Consensus 102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~ 173 (300)
++.-. .. ..+..+.+..+ .+++.++.+-|=++..- .+.+. +|.+++++-
T Consensus 76 v~vK~---------------~~-~~~al~~l~~~l~~~t~vv~lQNGv~~~e----~l~~~---~~~~~v~~g 125 (305)
T PRK05708 76 LACKA---------------YD-AEPAVASLAHRLAPGAELLLLQNGLGSQD----AVAAR---VPHARCIFA 125 (305)
T ss_pred EECCH---------------Hh-HHHHHHHHHhhCCCCCEEEEEeCCCCCHH----HHHHh---CCCCcEEEE
Confidence 98521 11 23344455554 47888888999988422 12232 667777755
No 181
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.03 E-value=0.0036 Score=59.68 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=45.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhC-CC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLN-PL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~-~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
|++|+|+||+|.+|..+...++.+ .+ ..+++++......+...++.+. ...... ..+. +.++++|+||++++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~~-~~~~~~Divf~a~~ 74 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFDI-DALKKLDIIITCQG 74 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCCh-hHhcCCCEEEECCC
Confidence 579999999999999999745544 44 3568887664433332233321 111111 1222 45789999999876
No 182
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.03 E-value=0.004 Score=53.53 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=61.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~ 108 (300)
|||+||||+|.+|+.++.....+|+ |++-+=+++.+-.+. +....- .-..+. -+.+.+++++-|+||.+.|...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~--~~~~i~-q~Difd-~~~~a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR--QGVTIL-QKDIFD-LTSLASDLAGHDAVISAFGAGA 74 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc--ccceee-cccccC-hhhhHhhhcCCceEEEeccCCC
Confidence 7999999999999999999999999 888887755322111 110000 000111 1223478999999999977653
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
++.. ..-.+-...+...++.. -...++++.
T Consensus 75 -~~~~-----~~~~k~~~~li~~l~~a-gv~RllVVG 104 (211)
T COG2910 75 -SDND-----ELHSKSIEALIEALKGA-GVPRLLVVG 104 (211)
T ss_pred -CChh-----HHHHHHHHHHHHHHhhc-CCeeEEEEc
Confidence 2211 11222344455555443 345666664
No 183
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=97.02 E-value=0.005 Score=57.32 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=66.6
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHH-Hh----ccc-----cCC-CcEEEEecC----------C
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-DV----GHI-----NTR-SEVAGYMGN----------D 88 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~-dl----~~~-----~~~-~~v~~~~~t----------~ 88 (300)
+|.|+||+|++|++++..|+..+...+|+++.+........ .+ ... ... ..+....+. .
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58899999999999999999887434788887754321111 11 100 000 134433222 1
Q ss_pred ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCe
Q 022263 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139 (300)
Q Consensus 89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a 139 (300)
++.+..+++|+||++|+... ......++...|+.-...+.+.+.+.....
T Consensus 81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~ 130 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP 130 (367)
T ss_pred HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce
Confidence 23344578999999988542 122334455678888888888877765543
No 184
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.02 E-value=0.0048 Score=57.21 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=43.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC---CCCEEEEcC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIPA 104 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~---~aDiVIi~a 104 (300)
|||+|||. |.+|+.++..|...++ +|.+||+++.+.. ++.+. .++. .+++++.++ ++|+||++.
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~~~--~~~~~----g~~~---~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEAVE--ALAEE----GATG---ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHC----CCee---cCCHHHHHhhcCCCCEEEEEe
Confidence 58999995 9999999999999887 8999998754322 22221 1221 123444444 469998874
No 185
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.00 E-value=0.0014 Score=62.97 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=47.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEcC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
..++||+|+||+|.+|..+...|..++.+ ||.++..++..|+...-.+... ........ ..+ .++++++|+||++.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al 112 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL 112 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence 36679999999999999999988888544 8888876544443211111000 00111010 111 13478999999976
Q ss_pred C
Q 022263 105 G 105 (300)
Q Consensus 105 g 105 (300)
+
T Consensus 113 p 113 (381)
T PLN02968 113 P 113 (381)
T ss_pred C
Confidence 5
No 186
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=96.98 E-value=0.011 Score=54.07 Aligned_cols=107 Identities=20% Similarity=0.148 Sum_probs=65.4
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cH-HHHhccccCCCcEEEEecC----CccccccC--CCCEEE
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GV-AADVGHINTRSEVAGYMGN----DQLGQALE--DSDVVI 101 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~-~~dl~~~~~~~~v~~~~~t----~d~~~a~~--~aDiVI 101 (300)
||.|+||+|++|..++..|.+.+. +++++|..... .. ...+.+.. .+..+.+. .+++++++ +.|+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERIT---RVTFVEGDLRDRELLDRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhcccc---ceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 689999999999999999998887 78888753211 11 11111100 12221111 12333343 699999
Q ss_pred EcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEE
Q 022263 102 IPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141 (300)
Q Consensus 102 i~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~v 141 (300)
.+||....+. ....+.+..|+.....+++.+.+.+...++
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v 117 (328)
T TIGR01179 76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFI 117 (328)
T ss_pred ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEE
Confidence 9998643221 223345677888888888888776544333
No 187
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.98 E-value=0.0033 Score=59.40 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=61.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
+.++|.|+||+|++|+.++..|....-..+|++++++..+.. ++........+ .++++++.++|+||.+++.
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~--~La~el~~~~i------~~l~~~l~~aDiVv~~ts~ 225 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQ--ELQAELGGGKI------LSLEEALPEADIVVWVASM 225 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHH--HHHHHhccccH------HhHHHHHccCCEEEECCcC
Confidence 445899999889999999999975422458999987543222 22211100011 2456789999999999887
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
+...-.+..++ .+..+++=++.|=|
T Consensus 226 ~~~~~I~~~~l------------------~~~~~viDiAvPRD 250 (340)
T PRK14982 226 PKGVEIDPETL------------------KKPCLMIDGGYPKN 250 (340)
T ss_pred CcCCcCCHHHh------------------CCCeEEEEecCCCC
Confidence 63211111111 35677777888887
No 188
>PRK08643 acetoin reductase; Validated
Probab=96.95 E-value=0.029 Score=49.91 Aligned_cols=115 Identities=22% Similarity=0.280 Sum_probs=63.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cc-------cccC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LG-------QALE 95 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~a~~ 95 (300)
.++.|+||+|.+|.+++..|++.+. +++++|.+... ....++.+.. ..+..+.. -++ +. +.+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3789999999999999999999887 89999986432 1222333211 11221111 011 11 1234
Q ss_pred CCCEEEEcCCCCC-CCCC--cc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 022263 96 DSDVVIIPAGVPR-KPGM--TR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP 147 (300)
Q Consensus 96 ~aDiVIi~ag~~~-~~g~--~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP 147 (300)
+.|++|+++|... .+-. +. ...+..|.. +.+.+.+.+.+..+++.++++|..
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 140 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ 140 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 6899999998642 1111 11 123344543 334444445444445677777643
No 189
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.95 E-value=0.0021 Score=52.56 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=51.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
+..++.|+|| |-+|..++..|...+. ++|.+++++..+.+ +|.+......+.... .+++.+.+.++|+||.+.+.
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~--~l~~~~~~~~~~~~~-~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAE--ALAEEFGGVNIEAIP-LEDLEEALQEADIVINATPS 85 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHH--HHHHHHTGCSEEEEE-GGGHCHHHHTESEEEE-SST
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHH--HHHHHcCccccceee-HHHHHHHHhhCCeEEEecCC
Confidence 4459999996 9999999999999875 57999998654333 332221112344332 24666778999999998765
Q ss_pred C
Q 022263 107 P 107 (300)
Q Consensus 107 ~ 107 (300)
+
T Consensus 86 ~ 86 (135)
T PF01488_consen 86 G 86 (135)
T ss_dssp T
T ss_pred C
Confidence 5
No 190
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.94 E-value=0.004 Score=50.16 Aligned_cols=72 Identities=29% Similarity=0.394 Sum_probs=43.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC--CCcEEEEecCCccccccCCCCEEEEc
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP 103 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi~ 103 (300)
|||+|+|++|.+|+.++..+.+.+-..=+..+|.......-.|+.+... +..+.. ++|+++.++.+|+||-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDf 74 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDF 74 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEc
Confidence 7999999779999999998888543322455666542111113322211 222332 35788889999988875
No 191
>PRK05717 oxidoreductase; Validated
Probab=96.94 E-value=0.0081 Score=53.61 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=77.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cc-------cccCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LG-------QALEDS 97 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~a~~~a 97 (300)
++|.|+||+|.+|++++..|+..+. +++++|.++.+.... ..+.. ..+..+.. -++ .+ +.+...
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 85 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKV-AKALG--ENAWFIAMDVADEAQVAAGVAEVLGQFGRL 85 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHH-HHHcC--CceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 4799999999999999999998886 899998764322211 01111 01111111 011 11 112357
Q ss_pred CEEEEcCCCCCCCC-----Ccc---hhhhhhhHHHHHHHHHHHHhh--CCCeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263 98 DVVIIPAGVPRKPG-----MTR---DDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (300)
Q Consensus 98 DiVIi~ag~~~~~g-----~~r---~dl~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~ 167 (300)
|++|++||...... .+. .+.+..|..-...+.+.+.++ ...+.+|++|..... .+ .+.
T Consensus 86 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~-----------~~-~~~ 153 (255)
T PRK05717 86 DALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR-----------QS-EPD 153 (255)
T ss_pred CEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc-----------CC-CCC
Confidence 99999998753211 111 234566766555566555432 224556666543221 01 222
Q ss_pred CcEEEeeehhHHHHHHHHHHHcC
Q 022263 168 KKLFGVTTLDVVRAKTFYAGKAN 190 (300)
Q Consensus 168 ~kviG~t~Lds~R~~~~la~~l~ 190 (300)
...++.+..--..+...++++++
T Consensus 154 ~~~Y~~sKaa~~~~~~~la~~~~ 176 (255)
T PRK05717 154 TEAYAASKGGLLALTHALAISLG 176 (255)
T ss_pred CcchHHHHHHHHHHHHHHHHHhc
Confidence 23344443222345667777765
No 192
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=96.94 E-value=0.0038 Score=57.42 Aligned_cols=102 Identities=21% Similarity=0.369 Sum_probs=68.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
+..+|+.|| -|.+|++++..|+..|+ .|+.||+...+ ..+|.+... .+. ..+.|..++||+||...+.
T Consensus 34 s~~~iGFIG-LG~MG~~M~~nLik~G~--kVtV~dr~~~k--~~~f~~~Ga--~v~-----~sPaeVae~sDvvitmv~~ 101 (327)
T KOG0409|consen 34 SKTRIGFIG-LGNMGSAMVSNLIKAGY--KVTVYDRTKDK--CKEFQEAGA--RVA-----NSPAEVAEDSDVVITMVPN 101 (327)
T ss_pred ccceeeEEe-eccchHHHHHHHHHcCC--EEEEEeCcHHH--HHHHHHhch--hhh-----CCHHHHHhhcCEEEEEcCC
Confidence 367999999 59999999999999998 99999986543 335665432 121 2346788999999998764
Q ss_pred CC----------------CCCCcc-hhhhhhhHHHHHHHHHHHHhhCCCeEEE
Q 022263 107 PR----------------KPGMTR-DDLFNINAGIVKDLCSAIAKYCPNAIVN 142 (300)
Q Consensus 107 ~~----------------~~g~~r-~dl~~~N~~i~~~i~~~i~~~~p~a~vi 142 (300)
|. ++|..- .|.=.-.-...++|.+.+... +++++
T Consensus 102 ~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~--~~~~v 152 (327)
T KOG0409|consen 102 PKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK--GGRFV 152 (327)
T ss_pred hHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC--CCeEE
Confidence 31 122211 233333456678888888754 55554
No 193
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.93 E-value=0.0062 Score=53.92 Aligned_cols=96 Identities=21% Similarity=0.302 Sum_probs=67.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
|||+|||. |.+|..+...+-.... ++-+.+||.+..+.. .+......+. .+++++.+.+.|+++.+|+
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~--~~~~~~~~~~------~s~ide~~~~~DlvVEaAS-- 69 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAK--ELEASVGRRC------VSDIDELIAEVDLVVEAAS-- 69 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHH--HHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence 68999995 9999999877776533 467888998654333 2332221111 1356566799999999985
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
.+.+++++.++-+.+.|.+++-++-=+|
T Consensus 70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad 97 (255)
T COG1712 70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD 97 (255)
T ss_pred --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence 3668999999999888988876654444
No 194
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.92 E-value=0.026 Score=50.35 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=65.5
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------cCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LED 96 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~~ 96 (300)
+|.|+||+|.+|.+++..|++.+. +|+++|.+... ....++........+..+.. .+| .+.+ +..
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 699999999999999999999887 89999986421 11112222110011222111 112 1111 246
Q ss_pred CCEEEEcCCCCCCCC---Ccch---hhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCC
Q 022263 97 SDVVIIPAGVPRKPG---MTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV 148 (300)
Q Consensus 97 aDiVIi~ag~~~~~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~ 148 (300)
.|+||+++|.+.... .+.. ..+..|+. +.+.+.+.+.+..+++.++.++...
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~ 143 (259)
T PRK12384 82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS 143 (259)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence 799999998653221 1222 22344543 3456666665555456677666543
No 195
>PRK06924 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.0073 Score=53.57 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=30.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
|++|.|+||+|.+|+.++..|++++. +|++.+.++
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 35799999999999999999999887 899998754
No 196
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.91 E-value=0.0052 Score=58.54 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=48.2
Q ss_pred ceEEEEcCCCChHHHHHHHHH-hCCCC-CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMK-LNPLV-SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~-~~~~~-~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
+||+|+||+|.||+.+...|. ...+- .+++++...+..|....+.... ..++. .++ .+++++.|+|++++|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~--~~v~~---~~~-~~~~~~vDivffa~g~ 74 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFD-IDALKALDIIITCQGG 74 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCc--ceEEc---Ccc-cccccCCCEEEEcCCH
Confidence 489999999999999998888 44442 6889998765544433332211 12222 112 2478999999999873
No 197
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.91 E-value=0.013 Score=51.77 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=31.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++|.|+||+|.+|..++..|++.|. +|++++++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~ 39 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE 39 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999887 899999865
No 198
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.91 E-value=0.0031 Score=58.39 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=45.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
|||++||. |.||..++..|.+.++ ++.++|+++. . .++.... ... ..+..++.++||+||++..
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~-~--~~~~~~g----~~~---~~s~~~~~~~advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV-A--DELLSLG----AVS---VETARQVTEASDIIFIMVP 64 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh-H--HHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence 58999995 9999999999999987 8999998642 1 2232211 111 1244567899999999853
No 199
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.91 E-value=0.0098 Score=52.75 Aligned_cols=113 Identities=15% Similarity=0.222 Sum_probs=63.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---cccc-------cC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQA-------LE 95 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~ 95 (300)
++|.|+||+|.+|++++..|+..|. ++++++++.... ...++.... ..+..+.. -.| ++++ +.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999887 899999865321 222332111 12222111 111 1122 24
Q ss_pred CCCEEEEcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263 96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN 146 (300)
+.|+||.++|...... .+ -.+.+..|..- .+.+.+.+++... ..++++|.
T Consensus 81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss 140 (258)
T PRK12429 81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG-GRIINMAS 140 (258)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-eEEEEEcc
Confidence 6899999998642111 11 11233344443 5566666655443 34554543
No 200
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.90 E-value=0.015 Score=51.53 Aligned_cols=116 Identities=17% Similarity=0.211 Sum_probs=64.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cc-------cccC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LG-------QALE 95 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~a~~ 95 (300)
+.++|.|+||+|.+|.+++..|++.|. +|++++.+........+.... ..+..+.. -++ .+ +.+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999887 899998754222222222211 11221111 011 11 2235
Q ss_pred CCCEEEEcCCCCCCCC---C---cchhhhhhhHHHHHHHH----HHHHhhCCCeEEEEecC
Q 022263 96 DSDVVIIPAGVPRKPG---M---TRDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISN 146 (300)
Q Consensus 96 ~aDiVIi~ag~~~~~g---~---~r~dl~~~N~~i~~~i~----~~i~~~~p~a~viv~tN 146 (300)
..|++|.++|...... . .-.+.+..|..-...+. +.+.+....+.+++++.
T Consensus 80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS 140 (248)
T TIGR01832 80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS 140 (248)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 6899999998743211 1 11233455654433344 44433333566666653
No 201
>PLN02256 arogenate dehydrogenase
Probab=96.90 E-value=0.0063 Score=56.72 Aligned_cols=65 Identities=22% Similarity=0.272 Sum_probs=44.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc-CCCCEEEEcC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA 104 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~-~~aDiVIi~a 104 (300)
.++||+|||+ |.+|..++..|...+. +|+.+|.++....+.++ .+..+ ++.++.+ .++|+||++.
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~-------gv~~~---~~~~e~~~~~aDvVilav 100 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL-------GVSFF---RDPDDFCEEHPDVVLLCT 100 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc-------CCeee---CCHHHHhhCCCCEEEEec
Confidence 3579999995 9999999999988775 89999986532112211 11221 3444554 4799999985
No 202
>PRK07574 formate dehydrogenase; Provisional
Probab=96.90 E-value=0.0063 Score=58.54 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=63.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
...++|+|||. |.||+.+|..|...+. +|+.+|......... ... .+..+ .++++.+++||+|++...
T Consensus 190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~---~~~---g~~~~---~~l~ell~~aDvV~l~lP 257 (385)
T PRK07574 190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVE---QEL---GLTYH---VSFDSLVSVCDVVTIHCP 257 (385)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhH---hhc---Cceec---CCHHHHhhcCCEEEEcCC
Confidence 45579999995 9999999999988777 899999854211111 100 12211 356788999999999853
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN 149 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d 149 (300)
.. ..+..++. .+.+....|.+++|+++ ..+|
T Consensus 258 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVD 290 (385)
T PRK07574 258 LH-----------PETEHLFD--ADVLSRMKRGSYLVNTARGKIVD 290 (385)
T ss_pred CC-----------HHHHHHhC--HHHHhcCCCCcEEEECCCCchhh
Confidence 21 12222221 23344445789999885 3455
No 203
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=96.89 E-value=0.013 Score=51.85 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++|.|+||+|++|+.++..|+..+. +++++|.+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~ 37 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNR 37 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence 46899999999999999999999887 899998865
No 204
>PRK06182 short chain dehydrogenase; Validated
Probab=96.88 E-value=0.0047 Score=55.81 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=63.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCcccccc-------CCCCE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQAL-------EDSDV 99 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~-------~~aDi 99 (300)
.++|.|+||+|.+|..++..|...|. +|++.+.+..+. .++...... .+.. .....+.++.+ .+.|+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l--~~~~~~~~~-~~~~Dv~~~~~~~~~~~~~~~~~~~id~ 77 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKM--EDLASLGVH-PLSLDVTDEASIKAAVDTIIAEEGRIDV 77 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhCCCe-EEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 35899999999999999999998887 899988754221 122111100 1111 00011122222 37899
Q ss_pred EEEcCCCCCC-C--CC---cchhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263 100 VIIPAGVPRK-P--GM---TRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 100 VIi~ag~~~~-~--g~---~r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN 146 (300)
+|.++|.... + .. .....+..|.. ..+.+.+.+++... +.+++++.
T Consensus 78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS 133 (273)
T PRK06182 78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS 133 (273)
T ss_pred EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence 9999986421 1 11 12233445543 35666666665543 44555543
No 205
>PRK07806 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.019 Score=50.76 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=65.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEec-CCcc---ccc-------
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG-NDQL---GQA------- 93 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~-t~d~---~~a------- 93 (300)
.+++.|+||+|++|.+++..|+..|. ++++++++... ....++.... ..+..+.. -+|. +..
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999998887 88888774321 1112232211 11221111 0121 111
Q ss_pred cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecC
Q 022263 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISN 146 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tN 146 (300)
+.+.|+||+++|..........+.+..|......+++.+.++.. .+.++++|.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 24689999998764222222233455676666666676666532 455665643
No 206
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=96.87 E-value=0.019 Score=51.01 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=30.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
|+|.|+||+|.+|..++..|...|. +++++++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 6899999999999999999999887 899999864
No 207
>PRK07069 short chain dehydrogenase; Validated
Probab=96.87 E-value=0.037 Score=48.86 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=64.9
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC-Ccc--cHHHHhccccCCCcEEEEe-cCCcc----------ccccC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP--GVAADVGHINTRSEVAGYM-GNDQL----------GQALE 95 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~-~~~--g~~~dl~~~~~~~~v~~~~-~t~d~----------~~a~~ 95 (300)
||.|+||+|.+|.+++..|+..|. ++++.+.+ ... ....++........+..+. .-+|. .+.+.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG 78 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 488999999999999999999887 89999986 221 1122222211110111110 00111 12245
Q ss_pred CCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263 96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN 146 (300)
..|+||..+|...... .+ -...+..|+. ..+.+.+.+++... +.+++++.
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss 138 (251)
T PRK07069 79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS 138 (251)
T ss_pred CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence 6899999998643211 11 1234456665 66777777776543 45555553
No 208
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.87 E-value=0.00088 Score=61.67 Aligned_cols=98 Identities=26% Similarity=0.271 Sum_probs=58.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~ 108 (300)
|||.|+||+|++|+++...|...++ +++.++..+ .|+.+.. .+. ++-+. .+-|+||.+|+...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~------~~~~~-~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVA------KLLEA-FKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHH------HHHHH-H--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHH------HHHHH-hCCCeEeccceeec
Confidence 8999999999999999999988776 788886542 2333321 010 01011 24789999997642
Q ss_pred CC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 109 KP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 109 ~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
.. ..+.......|......+++.+.+. ++.+|.+|
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~S 100 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKER--GARLIHIS 100 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEE
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEee
Confidence 11 1234455677888888999888875 34555553
No 209
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=96.86 E-value=0.0024 Score=58.39 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=58.0
Q ss_pred EEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEEcCCCCCC-
Q 022263 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGVPRK- 109 (300)
Q Consensus 33 IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi~ag~~~~- 109 (300)
|+||+|++|++++..|...+. ++++..... ..|+.+. .++.+.++ +.|+||++|+....
T Consensus 2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~~------------~~l~~~~~~~~~d~Vih~A~~~~~~ 63 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTRQ------------ADVEAFFAKEKPTYVILAAAKVGGI 63 (306)
T ss_pred cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCCH------------HHHHHHHhccCCCEEEEeeeeeccc
Confidence 899999999999999988776 444443211 1233221 12223333 57999999986421
Q ss_pred --CCCcchhhhhhhHHHHHHHHHHHHhhCCC
Q 022263 110 --PGMTRDDLFNINAGIVKDLCSAIAKYCPN 138 (300)
Q Consensus 110 --~g~~r~dl~~~N~~i~~~i~~~i~~~~p~ 138 (300)
......+.+..|......+++.+++....
T Consensus 64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~ 94 (306)
T PLN02725 64 HANMTYPADFIRENLQIQTNVIDAAYRHGVK 94 (306)
T ss_pred chhhhCcHHHHHHHhHHHHHHHHHHHHcCCC
Confidence 12234567788999999999999987643
No 210
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.85 E-value=0.013 Score=52.44 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=65.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc---cc-------cc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL---GQ-------AL 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~---~~-------a~ 94 (300)
.++|.|+||+|.+|++++..|+..|. +|++.+.+..+. ...++.... ..+..+.+ -+|. ++ .+
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999887 899998854321 111222111 11222111 1121 11 12
Q ss_pred CCCCEEEEcCCCCCCCCC------cchhhhhhhHHHHHHHHHHHHhh----CCCeEEEEecC
Q 022263 95 EDSDVVIIPAGVPRKPGM------TRDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN 146 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~------~r~dl~~~N~~i~~~i~~~i~~~----~p~a~viv~tN 146 (300)
...|+||+++|....... .-.+.+..|..-...+.+.+.++ .+.+.++++|.
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 468999999986321111 11234556766666666655544 24456666654
No 211
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.85 E-value=0.0069 Score=55.35 Aligned_cols=66 Identities=23% Similarity=0.329 Sum_probs=43.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
|||+|||. |.+|..++..|...++..+|+.+|+++.... .+.+... ... ..+..+ +.++|+||++.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~--~~~~~g~---~~~---~~~~~~-~~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHLK--KALELGL---VDE---IVSFEE-LKKCDVIFLAI 66 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHH--HHHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence 58999995 9999999999998886457889998643211 1221111 111 123334 44699999985
No 212
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.85 E-value=0.0042 Score=57.30 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=49.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
..||.|+|| |.+|.++++.|...+. .+|.++|++.. +..+.++.+... ...... .+++++.++++|+||.+.
T Consensus 127 ~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~--~~~~~~-~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 127 LERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFP--AARATA-GSDLAAALAAADGLVHAT 200 (284)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCC--CeEEEe-ccchHhhhCCCCEEEECC
Confidence 358999996 9999999999998874 57999999754 333445543221 122211 234445789999999983
No 213
>PRK07102 short chain dehydrogenase; Provisional
Probab=96.84 E-value=0.016 Score=51.26 Aligned_cols=116 Identities=18% Similarity=0.077 Sum_probs=64.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Cc---cccc----cCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQA----LEDS 97 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a----~~~a 97 (300)
|++|.|+||+|.+|..++..|++.|. +|++.|+++... ...++.... ...+..+... +| .++. .+..
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 46899999999999999999999887 899999865321 122222211 1122222110 11 1112 2345
Q ss_pred CEEEEcCCCCCC---CCCcch---hhhhhhHHHHHHHHHHHHhh---CCCeEEEEecC
Q 022263 98 DVVIIPAGVPRK---PGMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (300)
Q Consensus 98 DiVIi~ag~~~~---~g~~r~---dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 146 (300)
|++|+++|.... .+.+.. +.+..|..-...+.+.+.++ ...+.++++|-
T Consensus 78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 135 (243)
T PRK07102 78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISS 135 (243)
T ss_pred CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 999999885321 122222 24455665545455544433 23455666653
No 214
>PRK06180 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.018 Score=52.15 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=62.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cccc-------cCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LED 96 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~~ 96 (300)
+++|.|+||+|.+|++++..|+..|. +|++++++..... ++..... ..+..+.. -+| ..+. +..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~--~l~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAARA--DFEALHP-DRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHHH--HHHhhcC-CCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35799999999999999999999887 8999998643211 2222111 11211110 011 1112 236
Q ss_pred CCEEEEcCCCCCC-C--CCcc---hhhhhhhHHHHHHHHHH----HHhhCCCeEEEEecC
Q 022263 97 SDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN 146 (300)
Q Consensus 97 aDiVIi~ag~~~~-~--g~~r---~dl~~~N~~i~~~i~~~----i~~~~p~a~viv~tN 146 (300)
.|+||.+||.... + ..+. .+.+..|..-...+.+. +++.. .+.+|++|.
T Consensus 79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~iSS 137 (277)
T PRK06180 79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR-RGHIVNITS 137 (277)
T ss_pred CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CCEEEEEec
Confidence 8999999987421 1 1122 22355666555555554 33333 345665653
No 215
>PRK12829 short chain dehydrogenase; Provisional
Probab=96.80 E-value=0.019 Score=51.13 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+.+++.|+||+|.+|+.++..|+..+. +|++++.++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~ 45 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE 45 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 446999999999999999999999887 899999864
No 216
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.80 E-value=0.0071 Score=55.20 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=44.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
||||+|||. |.+|..++..+...+ -..-+.++|.++.+.. ++.+.. ....+ +++++.+.++|+|++++.
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~--~~a~~~---~~~~~---~~~~ell~~~DvVvi~a~ 70 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAE--NLASKT---GAKAC---LSIDELVEDVDLVVECAS 70 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHH--HHHHhc---CCeeE---CCHHHHhcCCCEEEEcCC
Confidence 589999995 999999998887754 2223567887643222 222211 12222 356666799999999963
No 217
>PLN02996 fatty acyl-CoA reductase
Probab=96.79 E-value=0.016 Score=57.61 Aligned_cols=107 Identities=19% Similarity=0.134 Sum_probs=66.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcc--cH-H--HHhccc------------cC----CCcEEEEe
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTP--GV-A--ADVGHI------------NT----RSEVAGYM 85 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~--g~-~--~dl~~~------------~~----~~~v~~~~ 85 (300)
.+.|.|+||+|++|++++..|+.. +-.++|+++.+.+.. .+ . .++.+. .. ..++..+.
T Consensus 11 ~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i~ 90 (491)
T PLN02996 11 NKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPVP 90 (491)
T ss_pred CCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEEe
Confidence 348999999999999999887754 345577777764321 10 0 011110 00 02344433
Q ss_pred cCC----------c-cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh
Q 022263 86 GND----------Q-LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135 (300)
Q Consensus 86 ~t~----------d-~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~ 135 (300)
|.- + +++.++++|+||++|+... ...+..+....|+.....+.+.+.+.
T Consensus 91 GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 150 (491)
T PLN02996 91 GDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC 150 (491)
T ss_pred cccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 321 1 2345689999999998643 22344556778999999988888764
No 218
>PRK07814 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.013 Score=52.66 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=64.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCccc---cc-------
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQLG---QA------- 93 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~~---~a------- 93 (300)
+.+++.|+||+|.+|.+++..|+..|. +|++.|++... ....++.... ..+..+.. -++.+ ++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999887 89999986432 1122232211 12222111 11211 11
Q ss_pred cCCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHH----HHHHhhCCCeEEEEecC
Q 022263 94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISN 146 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~----~~i~~~~p~a~viv~tN 146 (300)
+...|+||..||...... .+ -.+.+..|......+. +.+.+..+.+.+++++.
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS 147 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS 147 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 247899999998632211 11 1223444544444444 44444455566766664
No 219
>PRK08278 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.029 Score=50.80 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=82.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---------cHHHHhccccCCCcEEEEec----CCcccccc-
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---------GVAADVGHINTRSEVAGYMG----NDQLGQAL- 94 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---------g~~~dl~~~~~~~~v~~~~~----t~d~~~a~- 94 (300)
+++.|+||+|.+|..++..|++.|. +|++++.+... ..+.++.... ..+..+.. ..+.++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHH
Confidence 4799999999999999999999887 89999985421 1112222111 11221111 11111222
Q ss_pred ------CCCCEEEEcCCCCCC-C--CCcch---hhhhhhHHHH----HHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263 95 ------EDSDVVIIPAGVPRK-P--GMTRD---DLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (300)
Q Consensus 95 ------~~aDiVIi~ag~~~~-~--g~~r~---dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~ 158 (300)
...|++|++||.... + ..+.. ..+..|+.-. +.+.+.+.+. ..+.+++++.+...
T Consensus 83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-~~g~iv~iss~~~~-------- 153 (273)
T PRK08278 83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKS-ENPHILTLSPPLNL-------- 153 (273)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhc-CCCEEEEECCchhc--------
Confidence 368999999986421 1 11221 2334454433 3333444332 34666666643321
Q ss_pred HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (300)
Q Consensus 159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~ 201 (300)
....++....++.+..--.++...++++++ +..|++..+
T Consensus 154 --~~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i 192 (273)
T PRK08278 154 --DPKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNAL 192 (273)
T ss_pred --cccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence 000023344555554334456677777775 355666555
No 220
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.0074 Score=52.75 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++|.|+||+|.+|..++..|+++|. +++++|++.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~ 41 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGA 41 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCCh
Confidence 35899999999999999999999887 899999865
No 221
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=96.74 E-value=0.011 Score=54.01 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=61.5
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC-CCCEEEEcCCCCCC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGVPRK 109 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~-~aDiVIi~ag~~~~ 109 (300)
|+|+||+|+||+++...|...++ +|.++-++..+... ..+. .+... +.+.+... ++|+||..||.|--
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~~----~v~~~---~~~~~~~~~~~DavINLAG~~I~ 69 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLHP----NVTLW---EGLADALTLGIDAVINLAGEPIA 69 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcCc----ccccc---chhhhcccCCCCEEEECCCCccc
Confidence 67999999999999999999888 88888775533221 1121 11111 11122233 79999999998743
Q ss_pred CC---C-cchhhhhhhHHHHHHHHHHHHhhCCCe
Q 022263 110 PG---M-TRDDLFNINAGIVKDLCSAIAKYCPNA 139 (300)
Q Consensus 110 ~g---~-~r~dl~~~N~~i~~~i~~~i~~~~p~a 139 (300)
.. . ....+...-+...+.+.+.|.+.....
T Consensus 70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P 103 (297)
T COG1090 70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP 103 (297)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence 22 1 122344444566778888888665433
No 222
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.74 E-value=0.047 Score=48.26 Aligned_cols=35 Identities=37% Similarity=0.490 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|.+++..|+..+. +++++|++.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~ 40 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINA 40 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999886 899999864
No 223
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0039 Score=55.54 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=46.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCC--ccccc-cCCCCEEEEcCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND--QLGQA-LEDSDVVIIPAG 105 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~--d~~~a-~~~aDiVIi~ag 105 (300)
|+|.|+|+ |.+|+++|..|...|. +++++|.++..... -+.+. ....+-.-.+++ -++++ +.++|++|.+-|
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~-~~~~~-~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEE-FLADE-LDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHH-Hhhhh-cceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 68999996 9999999999999988 99999997642221 01111 111111111121 13333 789999998754
No 224
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=96.73 E-value=0.023 Score=50.63 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=63.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec----CCcccc-------ccC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG----NDQLGQ-------ALE 95 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~----t~d~~~-------a~~ 95 (300)
.++.|+||+|.+|.+++..|+..|. +++++|.+..... ..++.. .+..+.. ..+.++ .+.
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGP-----AAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999887 8999998653221 112211 1111110 111112 234
Q ss_pred CCCEEEEcCCCCCC-CC--Cc---chhhhhhhHHHHHHHHHHHH----hhCCCeEEEEecC
Q 022263 96 DSDVVIIPAGVPRK-PG--MT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISN 146 (300)
Q Consensus 96 ~aDiVIi~ag~~~~-~g--~~---r~dl~~~N~~i~~~i~~~i~----~~~p~a~viv~tN 146 (300)
..|++|+++|.... +- .+ -.+.+..|..-...+.+.+. +..+.+.+++++.
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 140 (257)
T PRK07067 80 GIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS 140 (257)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 68999999986421 11 11 12234556554444444443 3334466666654
No 225
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=96.72 E-value=0.016 Score=56.22 Aligned_cols=105 Identities=17% Similarity=0.255 Sum_probs=61.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC--CccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t--~d~~~a~~~aDiVIi~ag 105 (300)
+++|.|+||+|.+|.+++..|++.|. +++++|.++.+.. ..+.+............+ ++..+.+.+.|++|+.||
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l~-~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAG 254 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKIT-LEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHG 254 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHH-HHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCC
Confidence 45899999999999999999999887 8999987542111 111111111011111111 123345788999999998
Q ss_pred CCCCCCCcc---hhhhhhhHH----HHHHHHHHHHhh
Q 022263 106 VPRKPGMTR---DDLFNINAG----IVKDLCSAIAKY 135 (300)
Q Consensus 106 ~~~~~g~~r---~dl~~~N~~----i~~~i~~~i~~~ 135 (300)
.......+. .+.++.|.. +++.+.+.+++.
T Consensus 255 i~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~ 291 (406)
T PRK07424 255 INVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN 291 (406)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 753322222 234455654 455555555543
No 226
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=96.72 E-value=0.011 Score=60.71 Aligned_cols=90 Identities=18% Similarity=0.157 Sum_probs=60.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc--CCCCEEEEc
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIP 103 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~--~~aDiVIi~ 103 (300)
...|||.|+||+|++|++++..|...++ ++... . .|+.+.. .+...+ .+.|+||++
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~~------------~v~~~i~~~~pd~Vih~ 435 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDRS------------SLLADIRNVKPTHVFNA 435 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccHH------------HHHHHHHhhCCCEEEEC
Confidence 3568999999999999999999988775 55211 1 0111110 001112 268999999
Q ss_pred CCCCCCCC-----CcchhhhhhhHHHHHHHHHHHHhhCC
Q 022263 104 AGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCP 137 (300)
Q Consensus 104 ag~~~~~g-----~~r~dl~~~N~~i~~~i~~~i~~~~p 137 (300)
|+....+. .+..+.+..|+.....+++.+++.+.
T Consensus 436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~ 474 (668)
T PLN02260 436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL 474 (668)
T ss_pred CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence 98643221 13455678899999999999998754
No 227
>PRK06482 short chain dehydrogenase; Provisional
Probab=96.71 E-value=0.082 Score=47.67 Aligned_cols=111 Identities=15% Similarity=0.034 Sum_probs=62.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCcc---cc-------ccCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQL---GQ-------ALEDS 97 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~-------a~~~a 97 (300)
++|.|+||+|++|++++..|+..+. .+++.+.+... ..++.... ...+..+.. -+|. ++ .+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDA--LDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999887 78888875321 11221111 112222111 1121 11 23468
Q ss_pred CEEEEcCCCCCCCC-C--cc---hhhhhhhHHHHHHHHHHH----HhhCCCeEEEEec
Q 022263 98 DVVIIPAGVPRKPG-M--TR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMIS 145 (300)
Q Consensus 98 DiVIi~ag~~~~~g-~--~r---~dl~~~N~~i~~~i~~~i----~~~~p~a~viv~t 145 (300)
|+||++||...... + +. ...+..|..-...+.+.+ ++.+ .+.+|++|
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~s 134 (276)
T PRK06482 78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQG-GGRIVQVS 134 (276)
T ss_pred CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEc
Confidence 99999998753211 1 11 234456766666666665 3333 34555554
No 228
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.71 E-value=0.0044 Score=61.40 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=60.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc----cCCCcEEEEecCCccccccC---CCCE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----NTRSEVAGYMGNDQLGQALE---DSDV 99 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~----~~~~~v~~~~~t~d~~~a~~---~aDi 99 (300)
.+++|++|| .|.||+.+|..|+..|+ +|..||++..+.. ++.+. ... .+.. ..++++..+ .+|+
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~~~G~--~V~V~NRt~~k~~--~l~~~~~~~Ga~-~~~~---a~s~~e~v~~l~~~dv 75 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIAEKGF--PISVYNRTTSKVD--ETVERAKKEGNL-PLYG---FKDPEDFVLSIQKPRS 75 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHHhCCC--eEEEECCCHHHHH--HHHHhhhhcCCc-cccc---CCCHHHHHhcCCCCCE
Confidence 456899999 59999999999999998 9999998654332 22221 100 1111 234445554 4999
Q ss_pred EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN 146 (300)
Q Consensus 100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN 146 (300)
||++... -+.++++...+... .|..++|-.||
T Consensus 76 Ii~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT 108 (493)
T PLN02350 76 VIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGN 108 (493)
T ss_pred EEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCC
Confidence 9998532 23344444444444 46777777765
No 229
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.70 E-value=0.018 Score=50.44 Aligned_cols=114 Identities=19% Similarity=0.189 Sum_probs=63.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Cc---cccc-------cC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQA-------LE 95 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a-------~~ 95 (300)
++|.|+||+|.+|+.++..|+..+. +|+++++++... ...++.+. ..+..+.++ +| +.+. +.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999998887 899999865321 12233221 122222111 11 1122 34
Q ss_pred CCCEEEEcCCCCCCC---CCcch---hhhhhhHHHHHHHHHHHHhh--CCCeEEEEecCC
Q 022263 96 DSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKY--CPNAIVNMISNP 147 (300)
Q Consensus 96 ~aDiVIi~ag~~~~~---g~~r~---dl~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP 147 (300)
..|+||.++|..... ..+.. +.+..|+.-...+.+.+.+. ...+.+++++..
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (237)
T PRK07326 82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL 141 (237)
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence 799999998864321 11221 23444554444444443322 234566666643
No 230
>PLN02712 arogenate dehydrogenase
Probab=96.70 E-value=0.011 Score=60.98 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=45.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc-CCCCEEEEcC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA 104 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~-~~aDiVIi~a 104 (300)
.++|||+|||. |.+|..++..|...++ +|..+|.+.....+.++ .+..+ ++.++.+ +++|+||++.
T Consensus 50 ~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~-------Gv~~~---~d~~e~~~~~aDvViLav 116 (667)
T PLN02712 50 TTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL-------GVSFF---LDPHDLCERHPDVILLCT 116 (667)
T ss_pred CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc-------CCEEe---CCHHHHhhcCCCEEEEcC
Confidence 35689999995 9999999999998886 89999986422121111 12222 2444534 5799999984
No 231
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.70 E-value=0.0061 Score=57.28 Aligned_cols=107 Identities=25% Similarity=0.426 Sum_probs=66.8
Q ss_pred ccccccc-cCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccc
Q 022263 13 AKPAGAR-GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLG 91 (300)
Q Consensus 13 ~~~~~~~-~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~ 91 (300)
..-.|.+ .|...+...++|+|||. |.+|+.++..+..-|. +|..||....+.... .+ .... -.+++
T Consensus 126 ~~g~W~~~~~~g~el~gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~-----~~~~---~~~Ld 192 (324)
T COG0111 126 RRGEWDRKAFRGTELAGKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VD-----GVVG---VDSLD 192 (324)
T ss_pred HcCCccccccccccccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--cc-----ccee---cccHH
Confidence 4456666 35444556779999995 9999999999998888 999999833221111 11 1111 23577
Q ss_pred cccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 92 ~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
+.++.||+|++.. |..+. +| .++. .+.+.+-.|.+++||++
T Consensus 193 ~lL~~sDiv~lh~--PlT~e-T~--------g~i~--~~~~a~MK~gailIN~a 233 (324)
T COG0111 193 ELLAEADILTLHL--PLTPE-TR--------GLIN--AEELAKMKPGAILINAA 233 (324)
T ss_pred HHHhhCCEEEEcC--CCCcc-hh--------cccC--HHHHhhCCCCeEEEECC
Confidence 8899999999974 22221 22 1111 12233334788998875
No 232
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=96.70 E-value=0.041 Score=48.31 Aligned_cols=35 Identities=34% Similarity=0.473 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|+.++..|+..+. .+.+.+.+.
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~ 40 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRV 40 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCH
Confidence 45899999999999999999999886 788877643
No 233
>PRK07856 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.016 Score=51.58 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|..++..|+..+. +|++.|.+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~ 40 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRA 40 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 45899999999999999999999887 899998854
No 234
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.68 E-value=0.0047 Score=54.54 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=58.5
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcCCCCCC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAGVPRK 109 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~ag~~~~ 109 (300)
|+|+||+|++|+.++..|...+. +|..+=++........+.+.... .+.. +.....+.++|+|+|.||++.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSH- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence 78999999999999999998776 67777665432233334433211 1111 1011245678999999999866432
Q ss_pred CCCcchhhhhhhHHHHHHHHHHHHhhCCC
Q 022263 110 PGMTRDDLFNINAGIVKDLCSAIAKYCPN 138 (300)
Q Consensus 110 ~g~~r~dl~~~N~~i~~~i~~~i~~~~p~ 138 (300)
..-.+..+.+++...+.+-+
T Consensus 77 ---------~~~~~~~~~li~Aa~~agVk 96 (233)
T PF05368_consen 77 ---------PSELEQQKNLIDAAKAAGVK 96 (233)
T ss_dssp ---------CCHHHHHHHHHHHHHHHT-S
T ss_pred ---------hhhhhhhhhHHHhhhccccc
Confidence 12234456677777776633
No 235
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.68 E-value=0.029 Score=49.94 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=64.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccc-------cc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQ-------AL 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~-------a~ 94 (300)
.++|.|+||+|.+|..++..|+..|. +|++.|.++.+. ...++.+.. ..+..+.. -+| .++ .+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 35899999999999999999999887 899999864321 112222211 11221110 011 111 23
Q ss_pred CCCCEEEEcCCCCCC-CC--Cc---chhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 022263 95 EDSDVVIIPAGVPRK-PG--MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP 147 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~-~g--~~---r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP 147 (300)
...|++|+.+|.... +- .+ -.+.+..|+.-...+.+.+.++ ...+.++++|..
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~ 147 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV 147 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence 458999999986421 11 11 1234456665444444444433 234566666643
No 236
>PLN03139 formate dehydrogenase; Provisional
Probab=96.67 E-value=0.014 Score=56.26 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=63.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
....++|+|||. |.||..++..|...|. +|..+|......... .+. .+.. ..++++.+++||+|++..
T Consensus 196 ~L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~l 263 (386)
T PLN03139 196 DLEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINT 263 (386)
T ss_pred CCCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeC
Confidence 446679999995 9999999999987776 899999754221111 111 1221 136778899999999985
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN 149 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d 149 (300)
... ..+..++. .+.+....|++++|+++ ..+|
T Consensus 264 Plt-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVD 297 (386)
T PLN03139 264 PLT-----------EKTRGMFN--KERIAKMKKGVLIVNNARGAIMD 297 (386)
T ss_pred CCC-----------HHHHHHhC--HHHHhhCCCCeEEEECCCCchhh
Confidence 211 12222331 23455556899999884 3455
No 237
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.67 E-value=0.027 Score=51.44 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=71.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCCcEEEEe----cCCcc-------cc
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM----GNDQL-------GQ 92 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~-------~~ 92 (300)
..++.+.|+||++-+|..+|..|+.+|. .|+|+.+++ ....+.++++... ..+..+. .+++. .+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~-v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTG-VEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhC-ceEEEEECcCCChhHHHHHHHHHHh
Confidence 3456899999999999999999999998 999999865 3445556665431 1122211 11111 11
Q ss_pred ccCCCCEEEEcCCCCCCCC------CcchhhhhhhHHH----HHHHHHHHHhhCCCeEEEEec
Q 022263 93 ALEDSDVVIIPAGVPRKPG------MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 93 a~~~aDiVIi~ag~~~~~g------~~r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~t 145 (300)
..-..|+.|..||...-.. .+-.+++.-|+-- .+.+.+.+.+.. .+.||+++
T Consensus 81 ~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~ 142 (265)
T COG0300 81 RGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIG 142 (265)
T ss_pred cCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Confidence 2236999999999753221 1234566666544 455566666544 45556654
No 238
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.66 E-value=0.012 Score=55.36 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=47.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (300)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ 103 (300)
...+.+||+|||. |.+|.+++..|...++ +++.++....+.. +..... .+.. .+..+++++||+|+++
T Consensus 13 ~~L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~--~~A~~~---G~~~----~s~~eaa~~ADVVvLa 80 (330)
T PRK05479 13 SLIKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSW--KKAEAD---GFEV----LTVAEAAKWADVIMIL 80 (330)
T ss_pred hhhCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhH--HHHHHC---CCee----CCHHHHHhcCCEEEEc
Confidence 3345679999995 9999999999999887 8888776432221 111111 1111 2456889999999998
Q ss_pred C
Q 022263 104 A 104 (300)
Q Consensus 104 a 104 (300)
.
T Consensus 81 V 81 (330)
T PRK05479 81 L 81 (330)
T ss_pred C
Confidence 5
No 239
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=96.64 E-value=0.026 Score=50.01 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=32.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+.++|.|+||+|++|.+++..|+..+. +|+++|++.
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~ 46 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTE 46 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCH
Confidence 3456899999999999999999999886 899999865
No 240
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.63 E-value=0.0075 Score=60.40 Aligned_cols=104 Identities=22% Similarity=0.320 Sum_probs=64.1
Q ss_pred ccccc-CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc
Q 022263 16 AGARG-YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL 94 (300)
Q Consensus 16 ~~~~~-~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~ 94 (300)
-|.|. |...+...++|+|||. |.+|+.+|..|...|. +++.||.........++ .+.. ..++++.+
T Consensus 125 ~W~~~~~~g~~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~---~~~l~ell 191 (525)
T TIGR01327 125 EWDRKAFMGTELYGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL-------GVEL---VDDLDELL 191 (525)
T ss_pred CccccccCccccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE---cCCHHHHH
Confidence 35443 3333455679999995 9999999999987777 89999974322222221 1121 13577889
Q ss_pred CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
++||+|++..... + ++ ..++. .+.+....|++++|+++
T Consensus 192 ~~aDvV~l~lPlt--~-~T--------~~li~--~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 192 ARADFITVHTPLT--P-ET--------RGLIG--AEELAKMKKGVIIVNCA 229 (525)
T ss_pred hhCCEEEEccCCC--h-hh--------ccCcC--HHHHhcCCCCeEEEEcC
Confidence 9999999985321 1 11 11111 13344445788888874
No 241
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.63 E-value=0.012 Score=54.91 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=69.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-ccH---HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGV---AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~---~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
|||+|+|+ |.||+.++..|.+.+. ++.++-+.+. +.. -+.+.+.......... +.+..+....+|+||++.
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~--~~~~~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVV--AATDAEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCccccccc--cccChhhcCCCCEEEEEe
Confidence 79999996 9999999999999883 6666655432 111 0111111110011111 112235678999999985
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE-Eeee
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF-GVTT 175 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kvi-G~t~ 175 (300)
-.. -..+..+.+..+. |+++++..=|=... .+..++. +|+++++ |+|.
T Consensus 76 Ka~----------------q~~~al~~l~~~~~~~t~vl~lqNG~g~-----~e~l~~~--~~~~~il~G~~~ 125 (307)
T COG1893 76 KAY----------------QLEEALPSLAPLLGPNTVVLFLQNGLGH-----EEELRKI--LPKETVLGGVTT 125 (307)
T ss_pred ccc----------------cHHHHHHHhhhcCCCCcEEEEEeCCCcH-----HHHHHHh--CCcceEEEEEee
Confidence 321 1355666666665 57788888898883 2333332 5566555 6654
No 242
>PRK05875 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.041 Score=49.60 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++|.|+||+|.+|++++..|+..|. +|++++.+.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~ 41 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNP 41 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 36899999999999999999999887 899999754
No 243
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.62 E-value=0.0084 Score=54.21 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=45.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
|||+|||+ |.+|++++..|...++ ..++.++|.+..+. .++.+.. . .++.. ++..+.++++|+||++..
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~--~~l~~~~-~-~~~~~---~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIA--ARLAERF-P-KVRIA---KDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHH--HHHHHHc-C-CceEe---CCHHHHHHhCCEEEEEeC
Confidence 58999995 9999999999988774 24567777654322 2222211 1 12221 345567789999999853
No 244
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.14 Score=45.66 Aligned_cols=37 Identities=32% Similarity=0.385 Sum_probs=30.8
Q ss_pred CCCceEEEEcCCC-ChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 26 VPDRKVAVLGAAG-GIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 26 ~~~~KI~IIGaaG-~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+.+++.|+||+| -+|..++..|+..|. +|++.|.+.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~ 52 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE 52 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 3446899999877 599999999999887 799998754
No 245
>PLN00016 RNA-binding protein; Provisional
Probab=96.61 E-value=0.018 Score=54.95 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=32.1
Q ss_pred CCceEEEE----cCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVL----GAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~II----GaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++||.|+ ||+|++|++++..|...|+ +|+++++..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence 45689999 9999999999999999887 999999864
No 246
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.60 E-value=0.0057 Score=60.30 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=60.3
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~ 108 (300)
+|+||| .|.||.++|..|+..++ +|.+||+++.+.+ ++.+... ...+.......++.+.++++|+|+++.-.
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~--~V~v~drt~~~~~--~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~-- 73 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF--TVSVYNRTPEKTD--EFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKA-- 73 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC--eEEEEeCCHHHHH--HHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCC--
Confidence 489999 59999999999999998 8999998654332 2322100 00122221011222345679999887521
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC--CCc
Q 022263 109 KPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN--PVN 149 (300)
Q Consensus 109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN--P~d 149 (300)
+ +.+.++.+.+..+ .++.++|-.+| |.+
T Consensus 74 --~-----------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~ 104 (467)
T TIGR00873 74 --G-----------APVDAVINQLLPLLEKGDIIIDGGNSHYPD 104 (467)
T ss_pred --c-----------HHHHHHHHHHHhhCCCCCEEEECCCcCHHH
Confidence 1 2334444555554 36778887876 444
No 247
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.60 E-value=0.015 Score=53.46 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=43.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-----HHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVII 102 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi 102 (300)
+++|+|+|. |.||..++..|...++ .+..++.+...+. .+++.+.. . .+...++.++||+||+
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~~----~-----~~~~~~~~~~aD~Viv 70 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDEL----T-----VAGLAEAAAEADLVIV 70 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCccccc----c-----cchhhhhcccCCEEEE
Confidence 579999995 9999999999999998 5556666443221 12222211 0 1111467889999999
Q ss_pred cC
Q 022263 103 PA 104 (300)
Q Consensus 103 ~a 104 (300)
+.
T Consensus 71 av 72 (279)
T COG0287 71 AV 72 (279)
T ss_pred ec
Confidence 85
No 248
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.60 E-value=0.011 Score=56.45 Aligned_cols=56 Identities=25% Similarity=0.318 Sum_probs=41.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
.++|+|||.+|-+|..++..|.+. ...+|+-+|.. |.. ..+.++.+++||+||++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~----------d~~----------~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPA----------DPG----------SLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCC----------ccc----------cCCHHHHhcCCCEEEEeC
Confidence 359999996699999999999875 22388889862 110 124456789999999985
No 249
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.59 E-value=0.029 Score=49.46 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=63.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc---cc-------cc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL---GQ-------AL 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~---~~-------a~ 94 (300)
.++|.|+||+|.+|+.++..|.+.|. ++++++.++.+ ....++.... ..+..+.. -+|. ++ .+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999887 89999875431 1222332211 12222211 1111 11 12
Q ss_pred CCCCEEEEcCCCCCCC---CCcc---hhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecC
Q 022263 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 146 (300)
.+.|+||.++|..... ..+. ...+..|..-...+.+.+.++ ...+.++++|.
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 143 (250)
T PRK12939 83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS 143 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence 5789999999864321 1111 122345555444444444332 23456666654
No 250
>PRK06398 aldose dehydrogenase; Validated
Probab=96.57 E-value=0.024 Score=50.89 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=78.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-----HHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVII 102 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi 102 (300)
.+++.|+||+|.+|.+++..|+..|. +|++.+++..... ..|+.+.. .+... -....+.+...|++|.
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~D~~~~~---~i~~~--~~~~~~~~~~id~li~ 78 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKVDVSNKE---QVIKG--IDYVISKYGRIDILVN 78 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEccCCCHH---HHHHH--HHHHHHHcCCCCEEEE
Confidence 35899999999999999999999887 8999987543211 11221110 00000 0001122457899999
Q ss_pred cCCCCCC-C--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263 103 PAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172 (300)
Q Consensus 103 ~ag~~~~-~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG 172 (300)
+||.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.+|+++.-.. ..+ .+....++
T Consensus 79 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~~~-~~~~~~Y~ 145 (258)
T PRK06398 79 NAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIASVQS-----------FAV-TRNAAAYV 145 (258)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCcchh-----------ccC-CCCCchhh
Confidence 9986421 1 1111 223455544 344445555433 3456666653221 011 33333444
Q ss_pred eeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263 173 VTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (300)
Q Consensus 173 ~t~Lds~R~~~~la~~l~v~~~~V~~~v~ 201 (300)
.+..--..+-+.++.+++ +. |++..+
T Consensus 146 ~sKaal~~~~~~la~e~~--~~-i~vn~i 171 (258)
T PRK06398 146 TSKHAVLGLTRSIAVDYA--PT-IRCVAV 171 (258)
T ss_pred hhHHHHHHHHHHHHHHhC--CC-CEEEEE
Confidence 432222345566677765 22 554444
No 251
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.57 E-value=0.045 Score=48.94 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=30.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
|+|.|+||+|.+|..++..|+..|. +|++.|+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~ 34 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNE 34 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 6899999999999999999999987 899999865
No 252
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.56 E-value=0.0065 Score=57.35 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=47.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
++||+|+||+|.+|..++..|.+.++ .-||..+-..+..++..++.. ..+.... . + ..+++++|+||++.|.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~d-~-~-~~~~~~vDvVf~A~g~ 73 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVED-L-T-TFDFSGVDIALFSAGG 73 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEee-C-C-HHHHcCCCEEEECCCh
Confidence 57999999999999999999988544 237777765544454443322 1222211 1 1 1356899999998763
No 253
>PLN02928 oxidoreductase family protein
Probab=96.56 E-value=0.0087 Score=56.82 Aligned_cols=105 Identities=19% Similarity=0.216 Sum_probs=62.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHh--ccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV--GHINTRSEVAGYMGNDQLGQALEDSDVVII 102 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl--~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi 102 (300)
....++|+|+|. |.||+.+|..|...|. +|..+|..........+ ................++++.++.||+|++
T Consensus 156 ~l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 156 TLFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVL 232 (347)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEE
Confidence 345579999995 9999999999988777 89999975321111110 110000000000012367889999999999
Q ss_pred cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
+.... + .+..++. .+.+....|++++|+++
T Consensus 233 ~lPlt--~---------~T~~li~--~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 233 CCTLT--K---------ETAGIVN--DEFLSSMKKGALLVNIA 262 (347)
T ss_pred CCCCC--h---------HhhcccC--HHHHhcCCCCeEEEECC
Confidence 85321 1 1222221 23444556799999985
No 254
>PRK05993 short chain dehydrogenase; Provisional
Probab=96.56 E-value=0.0079 Score=54.60 Aligned_cols=111 Identities=11% Similarity=0.050 Sum_probs=62.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC--Ccccccc--------CCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLGQAL--------EDSD 98 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t--~d~~~a~--------~~aD 98 (300)
++|.|+||+|.+|.+++..|+..|. +|++.+++..... ++.+.... .+.. .-+ .+.++++ ...|
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~~--~l~~~~~~-~~~~-Dl~d~~~~~~~~~~~~~~~~g~id 78 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDVA--ALEAEGLE-AFQL-DYAEPESIAALVAQVLELSGGRLD 78 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHCCce-EEEc-cCCCHHHHHHHHHHHHHHcCCCcc
Confidence 4799999999999999999999887 8999988643211 22211100 0110 001 0111111 2579
Q ss_pred EEEEcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263 99 VVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 99 iVIi~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN 146 (300)
++|.+||...... .+ -.+.+..|..- .+.+.+.+++.. .+.+|++|.
T Consensus 79 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS 135 (277)
T PRK05993 79 ALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS 135 (277)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence 9999998643211 11 12345556543 566666666554 345555543
No 255
>PRK06101 short chain dehydrogenase; Provisional
Probab=96.53 E-value=0.031 Score=49.42 Aligned_cols=115 Identities=18% Similarity=0.128 Sum_probs=62.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCC-cEEE-EecCCccccccC----CCCEEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS-EVAG-YMGNDQLGQALE----DSDVVI 101 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~-~v~~-~~~t~d~~~a~~----~aDiVI 101 (300)
|.++.|+||+|.+|..++..|+..|. +++++|+++.... ++.+..... .+.. .....+.+++++ ..|++|
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i 76 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVLD--ELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWI 76 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEE
Confidence 35789999999999999999999887 8999998643211 111111000 1111 000111222222 357888
Q ss_pred EcCCCCCCCC---Ccc---hhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263 102 IPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN 146 (300)
Q Consensus 102 i~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN 146 (300)
+.+|...... .+. .+.+..|..-...+.+.+..+ .+...+++++.
T Consensus 77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS 128 (240)
T PRK06101 77 FNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS 128 (240)
T ss_pred EcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence 8887532111 111 234566776666666666543 23445555553
No 256
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.52 E-value=0.028 Score=47.97 Aligned_cols=33 Identities=36% Similarity=0.633 Sum_probs=29.3
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
||+|+|+ |.+|+.++..|+..|+ ++++|+|.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 6899995 9999999999999886 5899999864
No 257
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.51 E-value=0.0051 Score=58.29 Aligned_cols=71 Identities=23% Similarity=0.377 Sum_probs=48.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
.+||+|+||+|.+|..+...|..++.+ .+|.++...+..|+...+... .+.... .|. +.++++|+||++++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~----~l~v~~--~~~-~~~~~~Divf~a~~ 77 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR----EIIIQE--AKI-NSFEGVDIAFFSAG 77 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc----ceEEEe--CCH-HHhcCCCEEEECCC
Confidence 479999999999999999988865443 468888876655554433321 222221 132 45789999999875
No 258
>PRK08219 short chain dehydrogenase; Provisional
Probab=96.51 E-value=0.013 Score=50.99 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=45.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccC---CCCEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE---DSDVV 100 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~---~aDiV 100 (300)
+++|.|+||+|.+|..++..|++. . ++++++++.... .++.+... .+..+.+ ..+++++++ +.|+|
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~~--~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~id~v 75 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAERL--DELAAELP--GATPFPVDLTDPEAIAAAVEQLGRLDVL 75 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHHH--HHHHHHhc--cceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence 468999999999999999999887 4 799998754221 12221110 1111111 112333343 69999
Q ss_pred EEcCCCC
Q 022263 101 IIPAGVP 107 (300)
Q Consensus 101 Ii~ag~~ 107 (300)
|+++|..
T Consensus 76 i~~ag~~ 82 (227)
T PRK08219 76 VHNAGVA 82 (227)
T ss_pred EECCCcC
Confidence 9999874
No 259
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=96.50 E-value=0.04 Score=51.50 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=45.4
Q ss_pred ceEEEEcCCCC--------------------hHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEe
Q 022263 29 RKVAVLGAAGG--------------------IGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYM 85 (300)
Q Consensus 29 ~KI~IIGaaG~--------------------VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~ 85 (300)
|||+|-|| |+ =|+.+|..|+..|+ +|++||+++.. .....+.+.. ...
T Consensus 1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaG----A~~-- 71 (341)
T TIGR01724 1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAG----VKV-- 71 (341)
T ss_pred CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCC----Cee--
Confidence 68888885 74 36789999998888 99999986531 2223344332 221
Q ss_pred cCCccccccCCCCEEEEcC
Q 022263 86 GNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 86 ~t~d~~~a~~~aDiVIi~a 104 (300)
.++..++.+++|+||++.
T Consensus 72 -AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred -cCCHHHHHhCCCEEEEec
Confidence 234568899999999984
No 260
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.50 E-value=0.02 Score=50.59 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~ 63 (300)
+..||+|+|+ |.+|+.++..|+..|+ +++.|+|.+
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFD 61 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 3458999996 9999999999999886 589999986
No 261
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.47 E-value=0.0067 Score=57.55 Aligned_cols=74 Identities=26% Similarity=0.304 Sum_probs=44.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEE-EEecCCcccHHHH--hccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAAD--VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~-L~D~~~~~g~~~d--l~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
|||+|+||+|.+|..++..|.+.+.. +++ +++.++..++... ..+......... . ..+.++.++++|+||++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECCC
Confidence 58999999999999999988877544 566 7677553343221 111111001111 1 1133344468999999864
No 262
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.47 E-value=0.0066 Score=57.37 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
+|+||+|+||+|.+|.-+...|.+.++ ..+|.++...+..|+.+.+.. . .+.... . +. ++++++|+||++.+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~--~--~l~~~~-~-~~-~~~~~vD~vFla~p 75 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG--K--NLRVRE-V-DS-FDFSQVQLAFFAAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC--c--ceEEee-C-Ch-HHhcCCCEEEEcCC
Confidence 457999999999999999998886433 347777765444444333332 1 122211 1 21 34689999999765
No 263
>PRK12937 short chain dehydrogenase; Provisional
Probab=96.45 E-value=0.035 Score=48.80 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=62.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CC---ccccc-------
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-ND---QLGQA------- 93 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~---d~~~a------- 93 (300)
..+|.|+||+|.+|++++..|+..+. ++++...+.. .....++.... ..+..+.. -+ +++++
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999887 7777765332 11112222211 12222211 01 12222
Q ss_pred cCCCCEEEEcCCCCCCCC------CcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEec
Q 022263 94 LEDSDVVIIPAGVPRKPG------MTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMIS 145 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g------~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~t 145 (300)
+.+.|+||..+|...... +.-...+..|+.-...+.+.+.+. .+.+.++++|
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 236899999998642111 111223445655444444444333 2345666665
No 264
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.44 E-value=0.013 Score=58.75 Aligned_cols=108 Identities=21% Similarity=0.306 Sum_probs=66.9
Q ss_pred cccccc-CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccc
Q 022263 15 PAGARG-YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA 93 (300)
Q Consensus 15 ~~~~~~-~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a 93 (300)
-.|.+. |.......++|+|+|. |.+|+.+|..+...|. +|+.||.........++ .+... ++++.
T Consensus 126 g~W~~~~~~g~~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~~----~l~el 191 (526)
T PRK13581 126 GKWERKKFMGVELYGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVELV----SLDEL 191 (526)
T ss_pred CCCCccCccccccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEEE----cHHHH
Confidence 346553 3334456679999995 9999999999988777 89999974322221111 12211 46788
Q ss_pred cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN 149 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d 149 (300)
++.||+|++..... + +++ .++ | . +.+....|++++|+++ ..+|
T Consensus 192 l~~aDiV~l~lP~t--~-~t~-~li--~----~---~~l~~mk~ga~lIN~aRG~~vd 236 (526)
T PRK13581 192 LARADFITLHTPLT--P-ETR-GLI--G----A---EELAKMKPGVRIINCARGGIID 236 (526)
T ss_pred HhhCCEEEEccCCC--h-Hhh-cCc--C----H---HHHhcCCCCeEEEECCCCceeC
Confidence 99999999985322 1 111 111 2 1 2344445789999885 3455
No 265
>PRK06179 short chain dehydrogenase; Provisional
Probab=96.44 E-value=0.011 Score=53.09 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+|.|+||+|.+|++++..|+..|. +|++.+.+.
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~ 38 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNP 38 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 4799999999999999999999887 899998854
No 266
>PRK07832 short chain dehydrogenase; Provisional
Probab=96.43 E-value=0.13 Score=46.36 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+++.|+||+|.+|..++..|+..|. ++++++.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~ 34 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDA 34 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 3789999999999999999999886 799998754
No 267
>PRK07023 short chain dehydrogenase; Provisional
Probab=96.43 E-value=0.017 Score=51.02 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=31.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
||+|.|+||+|.+|..++..|++.|. ++++++.+.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~ 35 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR 35 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence 57999999999999999999998887 899998754
No 268
>PRK09291 short chain dehydrogenase; Provisional
Probab=96.42 E-value=0.043 Score=48.69 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=46.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHH-hccccCCCcEEEEe--cC--CccccccC-CCCEEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AAD-VGHINTRSEVAGYM--GN--DQLGQALE-DSDVVI 101 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~d-l~~~~~~~~v~~~~--~t--~d~~~a~~-~aDiVI 101 (300)
++|.|+||+|.+|..++..|++.|. ++++.+.+..... ..+ ...... .+.... -+ .++..++. +.|+||
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 3799999999999999999999886 7888877532111 111 111111 122111 11 12233344 899999
Q ss_pred EcCCCC
Q 022263 102 IPAGVP 107 (300)
Q Consensus 102 i~ag~~ 107 (300)
++||..
T Consensus 79 ~~ag~~ 84 (257)
T PRK09291 79 NNAGIG 84 (257)
T ss_pred ECCCcC
Confidence 999865
No 269
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.41 E-value=0.013 Score=48.38 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=48.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
+.++|+|+|+ |.+|..++..|...+ ..++.++|.+..+.. +.++.... .... ..+..+.++++|+||.+.
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIA----YLDLEELLAEADLIINTT 89 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--ccee----ecchhhccccCCEEEeCc
Confidence 3468999996 999999999998876 448999998653222 22222110 0011 124456689999999997
Q ss_pred CCC
Q 022263 105 GVP 107 (300)
Q Consensus 105 g~~ 107 (300)
..+
T Consensus 90 ~~~ 92 (155)
T cd01065 90 PVG 92 (155)
T ss_pred CCC
Confidence 654
No 270
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.41 E-value=0.019 Score=53.58 Aligned_cols=100 Identities=22% Similarity=0.307 Sum_probs=61.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
..++|+|+|+ |.+|..++..|...+. .+|.++|++..+.. ++.... ...+.. .+++.+++.++|+||.+.+.
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~--~la~~~-g~~~~~---~~~~~~~l~~aDvVi~at~~ 248 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAE--ELAKEL-GGNAVP---LDELLELLNEADVVISATGA 248 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHH--HHHHHc-CCeEEe---HHHHHHHHhcCCEEEECCCC
Confidence 4579999996 9999999988887552 48999998653322 222211 111111 12456778999999999775
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN 149 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d 149 (300)
+.. ..++.+.. ... ....+++-+++|-|
T Consensus 249 ~~~------------~~~~~~~~---~~~~~~~~~viDlavPrd 277 (311)
T cd05213 249 PHY------------AKIVERAM---KKRSGKPRLIVDLAVPRD 277 (311)
T ss_pred Cch------------HHHHHHHH---hhCCCCCeEEEEeCCCCC
Confidence 521 11122221 112 24567888999988
No 271
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.41 E-value=0.011 Score=54.24 Aligned_cols=94 Identities=24% Similarity=0.281 Sum_probs=64.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEEcCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV 106 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi~ag~ 106 (300)
|||.|+|+.|++|+.+...|. .+. +++-.|... +|+.+.. ...+.++ .-|+||.+|..
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy 60 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY 60 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence 679999999999999988776 333 677776533 4554432 1123344 45999999986
Q ss_pred CC--CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263 107 PR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144 (300)
Q Consensus 107 ~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~ 144 (300)
.. +...++..-+.-|..-...+++..++++ +++|-+
T Consensus 61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhi 98 (281)
T COG1091 61 TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHI 98 (281)
T ss_pred cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEe
Confidence 43 2333456567789999999999988874 444444
No 272
>PRK06181 short chain dehydrogenase; Provisional
Probab=96.40 E-value=0.048 Score=48.72 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=63.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc---ccc-------cC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL---GQA-------LE 95 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------~~ 95 (300)
++|.|+||+|.+|..++..|+..+. +|+++|++.... ...++.... ..+..+.. -.|. +++ +.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999998886 899999864322 122232221 12222211 1121 111 23
Q ss_pred CCCEEEEcCCCCCCCC---C-cc---hhhhhhhHHHHHHHHHHHHhhC--CCeEEEEecCC
Q 022263 96 DSDVVIIPAGVPRKPG---M-TR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP 147 (300)
Q Consensus 96 ~aDiVIi~ag~~~~~g---~-~r---~dl~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP 147 (300)
+.|+||.++|...... . +. ...+..|..-...+.+.+.++- ..+.+++++..
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~ 138 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL 138 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 6899999998643211 1 11 1234556555555555543321 23555555543
No 273
>PRK07890 short chain dehydrogenase; Provisional
Probab=96.39 E-value=0.042 Score=48.79 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++|.|+||+|.+|.+++..|+.+|. +|++.|+++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~ 39 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTA 39 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 35899999999999999999999887 899999864
No 274
>PLN02712 arogenate dehydrogenase
Probab=96.37 E-value=0.018 Score=59.24 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=45.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC-CCCEEEEcC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPA 104 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~-~aDiVIi~a 104 (300)
..+|||+|||. |.+|..++..|...|. +|+.+|.+.....+.++ .+... +++++.++ ++|+||++.
T Consensus 367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~-------Gv~~~---~~~~el~~~~aDvVILav 433 (667)
T PLN02712 367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL-------GVSYF---SDADDLCEEHPEVILLCT 433 (667)
T ss_pred CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc-------CCeEe---CCHHHHHhcCCCEEEECC
Confidence 36689999995 9999999999998876 89999986422111111 12221 34545554 599999985
No 275
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.37 E-value=0.0082 Score=56.93 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=47.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
..++||+|+||+|.+|..+...|..+++ ..+|.++...+..|+..+... ..+..- ..+ .++++++|+||+++
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~ 77 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSA 77 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECC
Confidence 3457999999999999999988887543 347777766544444332221 122221 112 25678999999987
Q ss_pred CC
Q 022263 105 GV 106 (300)
Q Consensus 105 g~ 106 (300)
+.
T Consensus 78 p~ 79 (344)
T PLN02383 78 GG 79 (344)
T ss_pred Cc
Confidence 63
No 276
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.37 E-value=0.011 Score=51.73 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~ 63 (300)
...||.|+|+ |.+|+.++..|+..|. ++|.|+|.+
T Consensus 20 ~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDD 54 (202)
T ss_pred cCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCC
Confidence 4458999995 9999999999999885 689999986
No 277
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.36 E-value=0.015 Score=52.81 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
||.|+||+|++|++++..|.+.+. ++....++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~ 33 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS 33 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence 589999999999999999998887 888888764
No 278
>PRK06914 short chain dehydrogenase; Provisional
Probab=96.35 E-value=0.035 Score=50.16 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
..+.|+||+|.+|.+++..|+.+|. +|++++.+.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 37 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNP 37 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCH
Confidence 3689999999999999999999887 899998754
No 279
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=96.34 E-value=0.031 Score=50.06 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
..++.|+||+|.+|.+++..|+..|. +|++.|++.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 39 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA 39 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999887 899998754
No 280
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.32 E-value=0.045 Score=50.37 Aligned_cols=116 Identities=22% Similarity=0.130 Sum_probs=65.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCcc---c-------ccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQL---G-------QAL 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d~---~-------~a~ 94 (300)
.++|.|+||+|.+|.+++..|+..|. +|++.+++..... ..++........+..+.. -.|. + +.+
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 35899999999999999999999887 8999987643221 222321111112222211 1111 1 113
Q ss_pred CCCCEEEEcCCCCCCCC-Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263 95 EDSDVVIIPAGVPRKPG-MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g-~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN 146 (300)
...|++|++||....+. .+ -...+..|..- .+.+.+.+++.. .+.+|++|.
T Consensus 94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 152 (306)
T PRK06197 94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSS 152 (306)
T ss_pred CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECC
Confidence 46899999998642221 11 12234455443 666666666543 355666653
No 281
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.31 E-value=0.014 Score=55.25 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=49.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---------------------ccH--HHHhccccCCCcEEE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------------------PGV--AADVGHINTRSEVAG 83 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---------------------~g~--~~dl~~~~~~~~v~~ 83 (300)
+..||+|||+ |.+|+.++..|+..|+ ++|.|+|.+.. +.+ +..+........+..
T Consensus 23 ~~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 23 REKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 3458999996 9999999999999985 68999998641 000 112222222234444
Q ss_pred Eec--C-CccccccCCCCEEEEcC
Q 022263 84 YMG--N-DQLGQALEDSDVVIIPA 104 (300)
Q Consensus 84 ~~~--t-~d~~~a~~~aDiVIi~a 104 (300)
+.. + .+.++.++++|+||.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~DlVid~~ 124 (338)
T PRK12475 101 VVTDVTVEELEELVKEVDLIIDAT 124 (338)
T ss_pred EeccCCHHHHHHHhcCCCEEEEcC
Confidence 321 1 23556789999999874
No 282
>PRK08251 short chain dehydrogenase; Provisional
Probab=96.31 E-value=0.064 Score=47.37 Aligned_cols=78 Identities=23% Similarity=0.217 Sum_probs=48.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc----------ccccC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL----------GQALE 95 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~~ 95 (300)
+++.|+||+|.+|.+++..|+..+. ++++.+++.... ...++........+..+.. -+|. .+.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999886 899998864221 1222222111112222211 1121 12245
Q ss_pred CCCEEEEcCCCCC
Q 022263 96 DSDVVIIPAGVPR 108 (300)
Q Consensus 96 ~aDiVIi~ag~~~ 108 (300)
..|++|+.||...
T Consensus 81 ~id~vi~~ag~~~ 93 (248)
T PRK08251 81 GLDRVIVNAGIGK 93 (248)
T ss_pred CCCEEEECCCcCC
Confidence 7899999998753
No 283
>PRK08263 short chain dehydrogenase; Provisional
Probab=96.31 E-value=0.044 Score=49.53 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=30.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+.|.|+||+|.+|++++..|+.++. +|++.+.+.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~ 37 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDT 37 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence 4699999999999999999998886 899998754
No 284
>PRK12827 short chain dehydrogenase; Provisional
Probab=96.30 E-value=0.046 Score=48.02 Aligned_cols=102 Identities=20% Similarity=0.340 Sum_probs=58.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHH----HHhccccCCCcEEEEecC-Cc---cccc----
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVA----ADVGHINTRSEVAGYMGN-DQ---LGQA---- 93 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~----~dl~~~~~~~~v~~~~~t-~d---~~~a---- 93 (300)
.++|.|+||+|.+|..++..|+..+. ++++++.... .... .++... ...+..+... .| .++.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDAG 81 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999887 8899876321 1111 112111 1122222111 11 1122
Q ss_pred ---cCCCCEEEEcCCCCCCC---CCcc---hhhhhhhHHHHHHHHHHHH
Q 022263 94 ---LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIA 133 (300)
Q Consensus 94 ---~~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~ 133 (300)
....|.||+++|..... ..+. ...+..|..-...+++.+.
T Consensus 82 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~ 130 (249)
T PRK12827 82 VEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAAL 130 (249)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 24689999999864311 1111 2234567666666666665
No 285
>PRK09135 pteridine reductase; Provisional
Probab=96.30 E-value=0.026 Score=49.66 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~ 63 (300)
++|.|+||+|++|++++..|+..+. ++++++..
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~ 39 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHR 39 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCC
Confidence 5899999999999999999999887 89999874
No 286
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=96.29 E-value=0.04 Score=50.85 Aligned_cols=116 Identities=20% Similarity=0.127 Sum_probs=71.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH---HHHhccccCCCcEEEEec-CCccccccC--CCCEEEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMG-NDQLGQALE--DSDVVII 102 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~---~~dl~~~~~~~~v~~~~~-t~d~~~a~~--~aDiVIi 102 (300)
|++.|+||+||+|+++...+..+..-.+|+.+|.-.-.|. ..++.+......+++-.+ .....+.++ +.|+|+.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 6899999999999999987777655457888886332222 233444321112332111 112334455 6899999
Q ss_pred cCCCCCC--CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263 103 PAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144 (300)
Q Consensus 103 ~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~ 144 (300)
.|.-..- .=..-.++++.|+--...+.+..+++...-.++=+
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HI 124 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHI 124 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEe
Confidence 8763210 00122567889999999999999999754334333
No 287
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.28 E-value=0.0085 Score=56.62 Aligned_cols=72 Identities=21% Similarity=0.289 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
..+||+|+||+|.+|..+...|.++.+ ..+|.++..+...|+...+... .+.... . + +.++.++|+||++++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~----~~~v~~-~-~-~~~~~~~Dvvf~a~p 75 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK----SVTVQD-A-A-EFDWSQAQLAFFVAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc----ceEEEe-C-c-hhhccCCCEEEECCC
Confidence 347999999999999999998888422 3488888665544543333221 222211 1 1 234589999999875
No 288
>PRK05650 short chain dehydrogenase; Provisional
Probab=96.27 E-value=0.077 Score=47.74 Aligned_cols=34 Identities=38% Similarity=0.593 Sum_probs=30.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
|+|.|+||+|.+|+.++..|+..|. +|++.+++.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~ 34 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNE 34 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4789999999999999999999887 899998854
No 289
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.26 E-value=0.029 Score=50.91 Aligned_cols=68 Identities=34% Similarity=0.352 Sum_probs=43.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
||||+|+|++|.||+.++..+...+-+.-+.++|.+....... .. . .+.. .+|+++.++++|+||...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~~--~--~i~~---~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--GA--L--GVAI---TDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--CC--C--Cccc---cCCHHHhccCCCEEEECC
Confidence 5899999966999999998777654333344577754322111 11 1 2222 357777788999999664
No 290
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.26 E-value=0.098 Score=46.68 Aligned_cols=115 Identities=19% Similarity=0.273 Sum_probs=64.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEe-cCCc---cccc-------cCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LED 96 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------~~~ 96 (300)
.+++.|+||+|.+|..++..|+..|. +|++++.+........+.... ..+..+. .-+| .++. +..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 34789999999999999999999987 899888753222112222111 1122111 0111 1122 346
Q ss_pred CCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263 97 SDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 97 aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN 146 (300)
.|++|..||...... .+ -...+..|.. +.+.+.+.+.+....+.+|+++.
T Consensus 84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS 143 (251)
T PRK12481 84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIAS 143 (251)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 899999998743211 11 1223445543 45555666655444466666654
No 291
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=96.26 E-value=0.053 Score=47.92 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
++|.|+||+|.+|+.++..|...|. +|++++++.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~ 35 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE 35 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999998887 899999864
No 292
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.25 E-value=0.027 Score=57.41 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=83.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcc----ccccCCCCEEEEc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIP 103 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~----~~a~~~aDiVIi~ 103 (300)
.++|.|+|. |.+|+.++..|..+++ +++++|.++..-+ .+.+...+ -+.+ .. ++. +..+++||.+|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~v~--~~~~~g~~-v~~G-Da-t~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISAVN--LMRKYGYK-VYYG-DA-TQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHHHH--HHHhCCCe-EEEe-eC-CCHHHHHhcCCccCCEEEEE
Confidence 368999996 9999999999998887 8999998764322 23332211 1111 11 221 1346899999998
Q ss_pred CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEE-ecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHH
Q 022263 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182 (300)
Q Consensus 104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~ 182 (300)
.+.+ +.| ..++..+++.+|+..++. +.||.+ .+.+++.| .+.++==+..-+.++-
T Consensus 472 ~~d~-----------~~n----~~i~~~~r~~~p~~~IiaRa~~~~~------~~~L~~~G---a~~vv~e~~es~l~l~ 527 (601)
T PRK03659 472 CNEP-----------EDT----MKIVELCQQHFPHLHILARARGRVE------AHELLQAG---VTQFSRETFSSALELG 527 (601)
T ss_pred eCCH-----------HHH----HHHHHHHHHHCCCCeEEEEeCCHHH------HHHHHhCC---CCEEEccHHHHHHHHH
Confidence 4321 334 345666788889866554 456655 23455555 4555433433344454
Q ss_pred HHHHHHcCCCCCceE
Q 022263 183 TFYAGKANVNVAEVN 197 (300)
Q Consensus 183 ~~la~~l~v~~~~V~ 197 (300)
...=..+|+++++++
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 528 RKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHcCCCHHHHH
Confidence 555567777776653
No 293
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.25 E-value=0.03 Score=58.19 Aligned_cols=93 Identities=19% Similarity=0.266 Sum_probs=58.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~ 108 (300)
.||+|||+ |.+|..++..|...++..+|..+|.++.+.. ...+... ... .++++.++++++|+||++...
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~--~a~~~g~--~~~---~~~~~~~~~~~aDvVilavp~-- 73 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLE--LAVSLGV--IDR---GEEDLAEAVSGADVIVLAVPV-- 73 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHH--HHHHCCC--CCc---ccCCHHHHhcCCCEEEECCCH--
Confidence 58999995 9999999999998875447999998653211 1111111 000 123556778999999998631
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEec
Q 022263 109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS 145 (300)
Q Consensus 109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~t 145 (300)
..+.++.+.+.++. ++.+++.++
T Consensus 74 --------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 74 --------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred --------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 22455555665553 455555443
No 294
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=96.25 E-value=0.041 Score=48.42 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++|.|+||+|.+|.+++..|..++. +|++++++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~ 40 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICG 40 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999887 899998864
No 295
>PRK05876 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.027 Score=51.26 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=64.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---ccc-------cc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQ-------AL 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~-------a~ 94 (300)
.+.+.|+||+|.+|.+++..|+..|. +|++.|.+... ....++.... ..+..+.. -+| .++ .+
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 34699999999999999999999887 89999986431 1222332211 11222111 011 111 12
Q ss_pred CCCCEEEEcCCCCCCC---CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN 146 (300)
...|++|..||..... ..+. ...+..|.. +.+.+.+.+.+....+.+++++.
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 3579999999864211 1122 123445543 44455555555543456666654
No 296
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.24 E-value=0.012 Score=47.82 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.||+|+|+ |.+|+.++..|+..|+ +++.|+|-+.
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI 36 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred CEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence 58999995 9999999999999886 6899999853
No 297
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=96.24 E-value=0.069 Score=47.60 Aligned_cols=114 Identities=16% Similarity=0.219 Sum_probs=63.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cccc-------cCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LEDS 97 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~~a 97 (300)
..+.|+||+|.+|.+++..|++.|. +|+++|.........++.... ..+..+.. -+| .++. +...
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 86 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGHI 86 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4789999999999999999999887 888888754322222232211 11211110 111 1121 2468
Q ss_pred CEEEEcCCCCCC-C--CCc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263 98 DVVIIPAGVPRK-P--GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 98 DiVIi~ag~~~~-~--g~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN 146 (300)
|++|.+||.... + ..+ -.+.+..|..- .+.+.+.+.+..+.+.+++++.
T Consensus 87 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 87 DILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 999999987431 1 111 12334455543 3444555544445577776654
No 298
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.23 E-value=0.0064 Score=56.77 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=49.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecC-CcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIA-NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~-~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
.++|+| ||+|.||..+...|.++++ .++|+|++.. ...|+...+... .+....-+ ++++++.|++++ +|
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~----~~~V~~l~---~~~f~~vDia~f-ag 73 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNK----AVEQIAPE---EVEWADFNYVFF-AG 73 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCE----EEEEEECC---ccCcccCCEEEE-cC
Confidence 468999 9999999999999998876 5899999986 555543333221 22222112 257899999999 66
No 299
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=96.22 E-value=0.25 Score=43.90 Aligned_cols=35 Identities=37% Similarity=0.475 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|.+++..|+..|. +|+++|++.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~ 42 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE 42 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence 45899999999999999999999887 899999864
No 300
>PRK06198 short chain dehydrogenase; Provisional
Probab=96.22 E-value=0.092 Score=46.71 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCE-EEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~e-l~L~D~~~ 64 (300)
+.++|.|+||+|.+|..++..|...+. + |++++++.
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~ 41 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNA 41 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCH
Confidence 345899999999999999999998886 5 99999854
No 301
>PRK05693 short chain dehydrogenase; Provisional
Probab=96.22 E-value=0.017 Score=52.12 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=30.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
|+++.|+||+|.+|..++..|+..|. +|++.+.+.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~ 35 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY--EVWATARKA 35 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35799999999999999999998887 899998754
No 302
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.21 E-value=0.037 Score=48.39 Aligned_cols=35 Identities=29% Similarity=0.556 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+++|.|+||+|.+|..++..|.++|. +|.+++.++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~ 39 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE 39 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 36899999999999999999999887 799998865
No 303
>PRK06138 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.047 Score=48.20 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=30.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|++++..|+..|. ++++++.+.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~ 39 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA 39 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence 45899999999999999999999886 899998764
No 304
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.21 E-value=0.008 Score=53.34 Aligned_cols=103 Identities=20% Similarity=0.311 Sum_probs=65.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc------cc---HHHHhcccc-CCC------cEEEEecCCcccc
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT------PG---VAADVGHIN-TRS------EVAGYMGNDQLGQ 92 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~------~g---~~~dl~~~~-~~~------~v~~~~~t~d~~~ 92 (300)
-||+|+| +|-+|+..|-.++..|+ ++.|||+.+. +. +..+|+... ... .+..+++|++++|
T Consensus 4 ~ki~ivg-Sgl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E 80 (313)
T KOG2305|consen 4 GKIAIVG-SGLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE 80 (313)
T ss_pred cceeEee-cccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence 4899999 79999999999999999 9999999641 11 222333221 111 1122456788888
Q ss_pred ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcc
Q 022263 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS 150 (300)
Q Consensus 93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~ 150 (300)
..++|=.|=.+ + .+.+...+.+.+++.+.. |..++ .|.....
T Consensus 81 ~vk~Ai~iQEc--v------------pE~L~lkk~ly~qlD~i~d~~tIl--aSSTSt~ 123 (313)
T KOG2305|consen 81 LVKGAIHIQEC--V------------PEDLNLKKQLYKQLDEIADPTTIL--ASSTSTF 123 (313)
T ss_pred HHhhhhhHHhh--c------------hHhhHHHHHHHHHHHHhcCCceEE--ecccccc
Confidence 88888443223 2 234556677778888775 44443 5544443
No 305
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.19 E-value=0.058 Score=49.62 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=30.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
++|.|+||+|.+|..++..|+..|. +|++.+++.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~ 74 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE 74 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 5799999999999999999999887 899999864
No 306
>PRK12742 oxidoreductase; Provisional
Probab=96.19 E-value=0.082 Score=46.28 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=28.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~ 62 (300)
.++|.|+||+|.+|..++..|+..|. ++++.+.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~ 38 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYA 38 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecC
Confidence 45899999999999999999999887 7877765
No 307
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.19 E-value=0.052 Score=47.62 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEE-ecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~-D~~~ 64 (300)
+++|.|+||+|.+|..++..|++.+. ++++. +.+.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~ 40 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINE 40 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence 45899999999999999999998886 77777 8754
No 308
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.18 E-value=0.012 Score=55.20 Aligned_cols=74 Identities=27% Similarity=0.298 Sum_probs=46.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCC--CcEEEEecCCcccc-ccCCCCEEEEc
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR--SEVAGYMGNDQLGQ-ALEDSDVVIIP 103 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~--~~v~~~~~t~d~~~-a~~~aDiVIi~ 103 (300)
.|+||+|+||+|..|..+...|..++.+ |+.++...+..|+...-.+-... ..++.. +-|.++ ...+||+||++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA 77 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence 3689999999999999999999988765 58888876545543322221111 112211 112222 24569999997
No 309
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.17 E-value=0.035 Score=48.85 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=62.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCcccccc---CCCCEEEEc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQAL---EDSDVVIIP 103 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~---~~aDiVIi~ 103 (300)
.+++.|+||+|.+|.+++..|+..+. +|++++++..+.. ++.+......+.. .....+.++.+ ...|+||..
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ 84 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAALD--RLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC 84 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence 35899999999999999999999887 8999988542211 2211110001111 10001112222 358999999
Q ss_pred CCCCCCC---CCcc---hhhhhhhHHHHHHHHHHHHhh----CCCeEEEEecC
Q 022263 104 AGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN 146 (300)
Q Consensus 104 ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~----~p~a~viv~tN 146 (300)
+|..... ..+. ...+..|..-...+.+.+.+. +..+.++++|.
T Consensus 85 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 137 (245)
T PRK07060 85 AGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS 137 (245)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 9864311 1111 223445655554455444433 22356666653
No 310
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=96.16 E-value=0.035 Score=49.19 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=62.5
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Ccc---ccc-------cCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQL---GQA-------LED 96 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d~---~~a-------~~~ 96 (300)
++.|+||+|.+|..++..|++.+. ++++++.+.... ...++.... ..+..+..+ +|. +++ +..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 589999999999999999999887 899998754211 112232211 122222111 121 111 245
Q ss_pred CCEEEEcCCCCCC-C--CCcch---hhhhhhHH----HHHHHHHHHHhhCCCeEEEEec
Q 022263 97 SDVVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 97 aDiVIi~ag~~~~-~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~p~a~viv~t 145 (300)
.|+||+++|.... + +.+.. ..+..|.. +++.+.+.+.+.+..+.++++|
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7999999986321 1 12222 22444543 3345555665555556666554
No 311
>PRK06128 oxidoreductase; Provisional
Probab=96.15 E-value=0.07 Score=49.04 Aligned_cols=115 Identities=23% Similarity=0.248 Sum_probs=65.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc----cHHHHhccccCCCcEEEEec-CCc---c-------cc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYMG-NDQ---L-------GQ 92 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~----g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~ 92 (300)
.++|.|+||+|.+|.+++..|+..|. ++++.+..... .....+.... ..+..+.. -+| . .+
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999887 78887664321 1111222211 11111110 011 1 12
Q ss_pred ccCCCCEEEEcCCCCC--CC--CCc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263 93 ALEDSDVVIIPAGVPR--KP--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN 146 (300)
Q Consensus 93 a~~~aDiVIi~ag~~~--~~--g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN 146 (300)
.+...|++|..||... .+ ..+ -...+..|+.-...+++.+.++- +.+.+|+++.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 2347899999998642 11 111 23355667665666666665542 3456666654
No 312
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.018 Score=51.29 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~ 65 (300)
+..+|.|+||+|.+|.+++..|++.+. +++++|+++.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~~ 42 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDPE 42 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence 345899999999999999999999887 8999998653
No 313
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.14 E-value=0.16 Score=45.34 Aligned_cols=35 Identities=34% Similarity=0.333 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+++|.|+||+|.+|..++..|++.|. +|+++|.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~ 36 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT 36 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999887 899999864
No 314
>PRK06841 short chain dehydrogenase; Provisional
Probab=96.14 E-value=0.018 Score=51.21 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++|.|+||+|.+|.+++..|++.|. +|++.+++.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~ 49 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSE 49 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999887 899998864
No 315
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.14 E-value=0.046 Score=48.62 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|.+++..|+..|. ++++.|++.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~ 43 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITA 43 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCH
Confidence 35799999999999999999999887 899999864
No 316
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.12 E-value=0.028 Score=52.82 Aligned_cols=95 Identities=20% Similarity=0.337 Sum_probs=60.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (300)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ 103 (300)
.....++++|+| .|.||+.+|..+.--+. +|+-+|..+......++ ..+. .++++.++.||+|++.
T Consensus 142 ~~l~gktvGIiG-~GrIG~avA~r~~~Fgm--~v~y~~~~~~~~~~~~~-------~~~y----~~l~ell~~sDii~l~ 207 (324)
T COG1052 142 FDLRGKTLGIIG-LGRIGQAVARRLKGFGM--KVLYYDRSPNPEAEKEL-------GARY----VDLDELLAESDIISLH 207 (324)
T ss_pred cCCCCCEEEEEC-CCHHHHHHHHHHhcCCC--EEEEECCCCChHHHhhc-------Ccee----ccHHHHHHhCCEEEEe
Confidence 345567999999 59999999998885455 99999986531111111 1121 1367889999999998
Q ss_pred CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
+... .+|-.++. .+.+++..|.+++|+++
T Consensus 208 ~Plt-----------~~T~hLin--~~~l~~mk~ga~lVNta 236 (324)
T COG1052 208 CPLT-----------PETRHLIN--AEELAKMKPGAILVNTA 236 (324)
T ss_pred CCCC-----------hHHhhhcC--HHHHHhCCCCeEEEECC
Confidence 5321 11222221 23344556889998875
No 317
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.12 E-value=0.04 Score=51.63 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=43.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
.+||+|||+ |++|.+++..|...++ +++.++....... ..+... .+.. + +..+++++||+|+++.
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~----Gv~~---~-s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATED----GFKV---G-TVEEAIPQADLIMNLL 67 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHC----CCEE---C-CHHHHHhcCCEEEEeC
Confidence 468999995 9999999999999887 6666554322111 111111 1221 2 3457789999999986
No 318
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.10 E-value=0.039 Score=48.12 Aligned_cols=114 Identities=17% Similarity=0.215 Sum_probs=61.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCcccc---ccC--CCCEEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQ---ALE--DSDVVI 101 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~---a~~--~aDiVI 101 (300)
|.++.|+||+|.+|++++..|+..+. +++++|.+..... ++.+.... .+.. .....+.++ .+. ..|+||
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~~--~~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~d~vi 75 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAALA--ALQALGAE-ALALDVADPASVAGLAWKLDGEALDAAV 75 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHHH--HHHhccce-EEEecCCCHHHHHHHHHHhcCCCCCEEE
Confidence 35789999999999999999998886 8999998643211 22211100 0111 000111111 122 489999
Q ss_pred EcCCCCCC---C--CCcc---hhhhhhhHHHHHHHHHHHHhhC--CCeEEEEecC
Q 022263 102 IPAGVPRK---P--GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN 146 (300)
Q Consensus 102 i~ag~~~~---~--g~~r---~dl~~~N~~i~~~i~~~i~~~~--p~a~viv~tN 146 (300)
+++|.... + ..+. ...+..|..-...+.+.+.++- ..+.+++++.
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS 130 (222)
T PRK06953 76 YVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS 130 (222)
T ss_pred ECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence 99987521 1 1122 2245566665555555554321 2345555543
No 319
>PRK06196 oxidoreductase; Provisional
Probab=96.10 E-value=0.043 Score=50.81 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=63.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEE-EecCCcc-------ccccCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAG-YMGNDQL-------GQALEDS 97 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~-~~~t~d~-------~~a~~~a 97 (300)
.++|.|+||+|.+|.+++..|+..|. +|++.+++..+.. ..++.... .+.. .....+. .+.+.+.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~Dl~d~~~v~~~~~~~~~~~~~i 100 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVMLDLADLESVRAFAERFLDSGRRI 100 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 35799999999999999999999887 8999988643221 11222110 0110 0000011 1123578
Q ss_pred CEEEEcCCCCCCCCC----cchhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263 98 DVVIIPAGVPRKPGM----TRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 98 DiVIi~ag~~~~~g~----~r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN 146 (300)
|++|+.||....+.. .....+..|.. +.+.+.+.+.+.. .+.+|++|.
T Consensus 101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 156 (315)
T PRK06196 101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS 156 (315)
T ss_pred CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence 999999986432211 11223444443 4566666665543 356666653
No 320
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.09 E-value=0.067 Score=46.75 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~ 62 (300)
++++|.|+||+|.+|+.++..|.+++. ++++...
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~ 38 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA--DVVVHYR 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeC
Confidence 356899999999999999999999887 6666554
No 321
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.09 E-value=0.082 Score=46.51 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=31.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+++++.|+||+|.+|..++..|++++. +|++++++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 40 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQ 40 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 355899999999999999999999887 899999864
No 322
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.09 E-value=0.017 Score=53.56 Aligned_cols=75 Identities=24% Similarity=0.469 Sum_probs=46.6
Q ss_pred CceEEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCcc--------------cHHHHh-ccccCCCcEEEEecCCccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTP--------------GVAADV-GHINTRSEVAGYMGNDQLG 91 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~~--------------g~~~dl-~~~~~~~~v~~~~~t~d~~ 91 (300)
++||+-||| |+||......++ .++.+ ++.++|++..+ |. .|. ..+ ..+--.+ ++|.+
T Consensus 1 ~~kicciga-gyvggptcavia~kcp~i-~vtvvd~s~~ri~~wnsd~lpiyepgl-devv~~c--rgknlff--stdie 73 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCPDI-EVTVVDISVPRINAWNSDKLPIYEPGL-DEVVKQC--RGKNLFF--STDIE 73 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCCce-EEEEEecCchHhhcccCCCCcccCCCH-HHHHHHh--cCCceee--ecchH
Confidence 579999996 999965543333 23322 89999996421 11 011 111 1111223 36888
Q ss_pred cccCCCCEEEEcCCCCCC
Q 022263 92 QALEDSDVVIIPAGVPRK 109 (300)
Q Consensus 92 ~a~~~aDiVIi~ag~~~~ 109 (300)
.+++.||+|++.+..|.|
T Consensus 74 kai~eadlvfisvntptk 91 (481)
T KOG2666|consen 74 KAIKEADLVFISVNTPTK 91 (481)
T ss_pred HHhhhcceEEEEecCCcc
Confidence 999999999999877654
No 323
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.07 E-value=0.034 Score=48.91 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|.+++..|+..|. +|++++++.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~ 41 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTE 41 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35799999999999999999999887 899999864
No 324
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=96.07 E-value=0.31 Score=43.86 Aligned_cols=154 Identities=14% Similarity=0.182 Sum_probs=92.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCCcEEEEecC---------CccccccCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN---------DQLGQALEDS 97 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t---------~d~~~a~~~a 97 (300)
+-+.|+||++-+|..+|..|.+.|. .++|..++. .+..+.++.+... .......| ..+.+.+...
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~--~~~~~DVtD~~~~~~~i~~~~~~~g~i 82 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAA--LALALDVTDRAAVEAAIEALPEEFGRI 82 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCce--EEEeeccCCHHHHHHHHHHHHHhhCcc
Confidence 3578999999999999999999998 999999854 3444555553100 11111111 1133457889
Q ss_pred CEEEEcCCCCCCCCC------cchhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263 98 DVVIIPAGVPRKPGM------TRDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (300)
Q Consensus 98 DiVIi~ag~~~~~g~------~r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~ 167 (300)
|++|..||..+.... +..+++..|++-+ +-+.+.+.+. ..+.||+++.=... . .||.
T Consensus 83 DiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r-~~G~IiN~~SiAG~-----------~-~y~~ 149 (246)
T COG4221 83 DILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINLGSIAGR-----------Y-PYPG 149 (246)
T ss_pred cEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc-CCceEEEecccccc-----------c-cCCC
Confidence 999999997544221 2345677787655 4455555544 35577777654431 1 2788
Q ss_pred CcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263 168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (300)
Q Consensus 168 ~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~ 201 (300)
..+++-|.---.-|..-|-+.+ ....|++..|
T Consensus 150 ~~vY~ATK~aV~~fs~~LR~e~--~g~~IRVt~I 181 (246)
T COG4221 150 GAVYGATKAAVRAFSLGLRQEL--AGTGIRVTVI 181 (246)
T ss_pred CccchhhHHHHHHHHHHHHHHh--cCCCeeEEEe
Confidence 8888765322222222222222 3477777766
No 325
>PRK07576 short chain dehydrogenase; Provisional
Probab=96.07 E-value=0.16 Score=45.64 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=30.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
..+|.|+||+|.+|..++..|+..|. +|+++|++.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~ 43 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQ 43 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 34899999999999999999998887 899999864
No 326
>PLN02503 fatty acyl-CoA reductase 2
Probab=96.07 E-value=0.054 Score=55.13 Aligned_cols=109 Identities=19% Similarity=0.109 Sum_probs=67.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcc--c-HHH--Hhccc---------c-------CCCcEEEE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTP--G-VAA--DVGHI---------N-------TRSEVAGY 84 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~--g-~~~--dl~~~---------~-------~~~~v~~~ 84 (300)
+.+.|.|+||+|++|..++..|+... -.++|+++.+.+.. . +.+ ++.+. . ...++..+
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v 197 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV 197 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence 45689999999999999999888643 35678888764321 1 111 11110 0 01234443
Q ss_pred ecC-C---------ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC
Q 022263 85 MGN-D---------QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136 (300)
Q Consensus 85 ~~t-~---------d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~ 136 (300)
.++ + +++...++.|+||++|+... ...+..+.+..|+.-..++.+.+.+..
T Consensus 198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~ 258 (605)
T PLN02503 198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK 258 (605)
T ss_pred EeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 321 1 12233467999999997643 233445567789999999998887653
No 327
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.06 E-value=0.081 Score=46.72 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~ 62 (300)
++|.|+||+|.+|++++..|+..|. ++++.+.
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~ 37 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYH 37 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcC
Confidence 4799999999999999999998886 7777654
No 328
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=96.06 E-value=0.044 Score=48.07 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=43.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc------cccccCCCCEEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ------LGQALEDSDVVI 101 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d------~~~a~~~aDiVI 101 (300)
|+|.|+||+|.+|..++..|++.+....+.+.+.+.... ..+ ..+..+.. -+| ..+.+...|++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~----~~~~~~~~Dls~~~~~~~~~~~~~~id~li 72 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQH----DNVQWHALDVTDEAEIKQLSEQFTQLDWLI 72 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----ccc----CceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998875322566665533211 111 01111110 011 123457899999
Q ss_pred EcCCCCC
Q 022263 102 IPAGVPR 108 (300)
Q Consensus 102 i~ag~~~ 108 (300)
.++|...
T Consensus 73 ~~aG~~~ 79 (235)
T PRK09009 73 NCVGMLH 79 (235)
T ss_pred ECCcccc
Confidence 9999753
No 329
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.06 E-value=0.017 Score=52.34 Aligned_cols=101 Identities=23% Similarity=0.286 Sum_probs=67.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhC----CCC-----CEEEEEecCCc--cc------HHHHhccccCCCcEEEEecCCccc
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIANT--PG------VAADVGHINTRSEVAGYMGNDQLG 91 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~----~~~-----~el~L~D~~~~--~g------~~~dl~~~~~~~~v~~~~~t~d~~ 91 (300)
.||.+.|| |..|..++.+|... |+- +.++|+|.+-. .+ ....+.+...+ ... ..++.
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~--~~~---~~~L~ 99 (255)
T PF03949_consen 26 QRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNP--EKD---WGSLL 99 (255)
T ss_dssp -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSST--TT-----SSHH
T ss_pred cEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcc--ccc---ccCHH
Confidence 49999996 99999998877765 773 68999998531 11 11112221111 111 13788
Q ss_pred cccCCC--CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 92 QALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 92 ~a~~~a--DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
++++++ |++|=+.+.+ | -+-+++.+.|.+++++.+|+=.|||..
T Consensus 100 eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~ 145 (255)
T PF03949_consen 100 EAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTP 145 (255)
T ss_dssp HHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCG
T ss_pred HHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCC
Confidence 999999 9988876643 2 124788889999999999999999987
No 330
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.04 E-value=0.22 Score=44.94 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|.+++..|+..|. .|+++|.+.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~ 44 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ 44 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35799999999999999999999887 899999864
No 331
>PRK06701 short chain dehydrogenase; Provisional
Probab=96.03 E-value=0.15 Score=46.79 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=67.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEec-CCc---ccccc-----
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG-NDQ---LGQAL----- 94 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~----- 94 (300)
+.++|.|+||+|.+|++++..|+..|. ++++++.+... .....+... ...+..+.. -+| +++.+
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 446899999999999999999999887 89999885421 111122211 112222111 011 11222
Q ss_pred --CCCCEEEEcCCCCCCCC----Ccc---hhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263 95 --EDSDVVIIPAGVPRKPG----MTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN 146 (300)
Q Consensus 95 --~~aDiVIi~ag~~~~~g----~~r---~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN 146 (300)
...|+||..||.....+ .+. ...+..|+.-...+.+.+.++ .+.+.+|++|.
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 35799999998632111 111 234566776666666666554 34456666654
No 332
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.03 E-value=0.027 Score=50.18 Aligned_cols=100 Identities=22% Similarity=0.346 Sum_probs=61.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCC-CEEEEEecCC----cccH-----HHHhccccCCCcEEEEecCCccccccCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIAN----TPGV-----AADVGHINTRSEVAGYMGNDQLGQALED 96 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~-~el~L~D~~~----~~g~-----~~dl~~~~~~~~v~~~~~t~d~~~a~~~ 96 (300)
+..||.|+|| |..|..++..|...|.- ++|.++|++. .+.. ..++.+...... . ..++.+++++
T Consensus 24 ~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~~ 97 (226)
T cd05311 24 EEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALKG 97 (226)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHhc
Confidence 3458999996 99999999999887752 2799999973 2221 112221110001 1 1245678899
Q ss_pred CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 022263 97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150 (300)
Q Consensus 97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~ 150 (300)
+|++|-+.+ +|+ + + .+..+.+ +++.+++..+||..+
T Consensus 98 ~dvlIgaT~----~G~-----~--~----~~~l~~m---~~~~ivf~lsnP~~e 133 (226)
T cd05311 98 ADVFIGVSR----PGV-----V--K----KEMIKKM---AKDPIVFALANPVPE 133 (226)
T ss_pred CCEEEeCCC----CCC-----C--C----HHHHHhh---CCCCEEEEeCCCCCc
Confidence 999988764 343 1 1 2333333 366777778899754
No 333
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.03 E-value=0.018 Score=54.63 Aligned_cols=34 Identities=32% Similarity=0.373 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEe
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D 61 (300)
|+||+|+||+|.+|..++..|...+..+-+.+.|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence 5799999998999999998888765443345566
No 334
>PRK05854 short chain dehydrogenase; Provisional
Probab=96.03 E-value=0.07 Score=49.53 Aligned_cols=170 Identities=15% Similarity=0.096 Sum_probs=83.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc----------cccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL----------GQAL 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~ 94 (300)
.+++.|+||++.+|..++..|+..|. +|++.+++..+. ...++........+..+.. -.|+ .+..
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45899999999999999999999886 899998865322 2223322111112222110 1121 1123
Q ss_pred CCCCEEEEcCCCCCCCC--Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCC
Q 022263 95 EDSDVVIIPAGVPRKPG--MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY 165 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~g--~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~ 165 (300)
...|++|..||....+. .+ -...+..|.- +.+.+.+.+++. .+.+|+++.-......+-..-+.....+
T Consensus 92 ~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~~~~~~~~~~~~~~ 169 (313)
T PRK05854 92 RPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRGAINWDDLNWERSY 169 (313)
T ss_pred CCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCCCcCcccccccccC
Confidence 46899999998643221 11 1223444433 345555555443 3455555432210000000000000012
Q ss_pred CCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263 166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (300)
Q Consensus 166 ~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~ 201 (300)
++...++.+.+-...+-..+++++......|++..+
T Consensus 170 ~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v 205 (313)
T PRK05854 170 AGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLA 205 (313)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence 233334444443444556666665444455665555
No 335
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.03 E-value=0.015 Score=51.99 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++|.|+||+|.+|+.++..|+..|. +|++.++++
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~ 43 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR 43 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence 45899999999999999999999887 899998854
No 336
>PRK06172 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.069 Score=47.37 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
..+|.|+||+|.+|..++..|+..|. ++++++.+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~ 41 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDA 41 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 35899999999999999999998886 899999864
No 337
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=95.99 E-value=0.048 Score=50.63 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=63.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQAL------- 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~------- 94 (300)
+++|.|+||+|.+|.+++..|+..|. +|++.+++..+. ...++... ...+..+.. -+| .++++
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45799999999999999999999886 899998754322 12223211 112222111 111 11222
Q ss_pred CCCCEEEEcCCCCCC----CCCcc---hhhhhhhHH----HHHHHHHHHHhhCC-CeEEEEec
Q 022263 95 EDSDVVIIPAGVPRK----PGMTR---DDLFNINAG----IVKDLCSAIAKYCP-NAIVNMIS 145 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~----~g~~r---~dl~~~N~~----i~~~i~~~i~~~~p-~a~viv~t 145 (300)
...|++|..||.... ...+. ...+..|.. +.+.+.+.+.+... .+.||+++
T Consensus 82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 248999999986321 11121 223455654 44555555554432 24566554
No 338
>PRK05855 short chain dehydrogenase; Validated
Probab=95.98 E-value=0.098 Score=52.03 Aligned_cols=116 Identities=17% Similarity=0.213 Sum_probs=67.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc---cc-------c
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL---GQ-------A 93 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~---~~-------a 93 (300)
+.+++.|+||+|.+|.+++..|+..|. +|++.+++.... ...++..... .+..+.. -+|. ++ .
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 446899999999999999999999887 899999865321 2222322111 1221110 0121 11 1
Q ss_pred cCCCCEEEEcCCCCCCCC---Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263 94 LEDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN 146 (300)
+...|++|.+||...... .+. ...+..|. ...+.+.+.+.+.+..+.+|++|.
T Consensus 390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS 452 (582)
T PRK05855 390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS 452 (582)
T ss_pred cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 235899999999753211 111 12334554 344555566666555567777654
No 339
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=95.98 E-value=0.056 Score=47.80 Aligned_cols=35 Identities=34% Similarity=0.368 Sum_probs=30.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|+.++..|+..+. +++++|.+.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~ 42 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF 42 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence 35899999999999999999999887 899998754
No 340
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.98 E-value=0.051 Score=50.80 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
...+.|+||+|.+|.+++..|+..|. +|+++++++
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~ 87 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNP 87 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCH
Confidence 35799999999999999999999987 899999865
No 341
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.97 E-value=0.042 Score=53.60 Aligned_cols=125 Identities=25% Similarity=0.338 Sum_probs=72.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH---HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~---~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
.++|.|+|+ |.+|..+|..|+..|. +|+++|.+..... ..++... .++.+.+. ...+...++|+||.++
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGE-YPEEFLEGVDLVVVSP 76 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCC-cchhHhhcCCEEEECC
Confidence 358999996 8899999999999998 8999999642211 1222211 22232221 1124457899999998
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe--cCCCcccHHHHHHHHHHhC
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG 163 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~~~i~~~~~~~~~ 163 (300)
|.+.... .....-+.+++++...+...... + ..+|-+ ||==.+.+.+++++++..+
T Consensus 77 g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 77 GVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred CCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 8742111 11111234666666555443332 2 334445 4433445567777777654
No 342
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=95.97 E-value=0.078 Score=42.12 Aligned_cols=102 Identities=23% Similarity=0.217 Sum_probs=52.4
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCc-EEEEecCCccccccCCCCEEEEcCCCCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-VAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~-v~~~~~t~d~~~a~~~aDiVIi~ag~~~ 108 (300)
||+|+|++|.+|..++..|...+.+.-..+++.++..+......+...... ...+. ..+++ ..++|+||++.+..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~~~- 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALPHG- 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCCcH-
Confidence 689999779999999988888643432334465433333222122111000 11111 12221 35899999985421
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
...+.+..+ .....++.++|-.|++..
T Consensus 77 -----------~~~~~~~~~---~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 77 -----------VSKEIAPLL---PKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred -----------HHHHHHHHH---HhhhcCCCEEEECCcccc
Confidence 122222211 222346777777777654
No 343
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.96 E-value=0.024 Score=49.83 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
||+.|+||+|.+|+.++..|...+. +++++++++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5899999999999999999998887 899998854
No 344
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.96 E-value=0.17 Score=45.42 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|..++..|+..|. +|++.|++.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDA 40 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999887 899999864
No 345
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.95 E-value=0.017 Score=49.89 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=47.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec--CCccccccCCCCEEEE
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG--NDQLGQALEDSDVVII 102 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~--t~d~~~a~~~aDiVIi 102 (300)
+.+++.|+||+|.+|..++..|...+. ++.+++++..+.+ ..++.+. ....+..... ..+..++++++|+||.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRAR-FGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhh-cCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 446899999889999999999988775 8999987643222 2223211 1112222111 1233467899998887
Q ss_pred cCC
Q 022263 103 PAG 105 (300)
Q Consensus 103 ~ag 105 (300)
+..
T Consensus 104 at~ 106 (194)
T cd01078 104 AGA 106 (194)
T ss_pred CCC
Confidence 654
No 346
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.95 E-value=0.074 Score=47.14 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
++|.|+||+|.+|++++..|+..+. +++++|...
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~ 36 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD 36 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence 4689999999999999999999887 899998753
No 347
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.95 E-value=0.13 Score=45.75 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|.+++..|+..|. +|+++|.++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~ 41 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDA 41 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45799999999999999999999887 899999865
No 348
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.94 E-value=0.055 Score=44.25 Aligned_cols=32 Identities=28% Similarity=0.614 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~ 63 (300)
||.|+|+ |.+|+.++..|+..|. +++.++|.+
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFD 32 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence 6899995 9999999999999886 689999986
No 349
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.94 E-value=0.014 Score=54.42 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=59.8
Q ss_pred hhhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCCccc--HHHHhccccCCCcE
Q 022263 5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTPG--VAADVGHINTRSEV 81 (300)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v 81 (300)
.|-.++|-|-.+..-+++... ...+|+|+|+ |.+|...+..+.. .+ ..++.++|+++.+. .+.++... ...+
T Consensus 103 ~lT~~RTaA~sala~~~La~~-~~~~v~IiGa-G~qa~~~~~al~~~~~-~~~v~v~~r~~~~a~~~a~~~~~~--~~~~ 177 (304)
T PRK07340 103 TVTGRRTAAVSLLAARTLAPA-PPGDLLLIGT-GVQARAHLEAFAAGLP-VRRVWVRGRTAASAAAFCAHARAL--GPTA 177 (304)
T ss_pred hHHHHHHHHHHHHHHHHhCCC-CCCEEEEECC-cHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCee
Confidence 444556655555555566554 4569999995 9999998887765 44 36899999975432 33334321 1122
Q ss_pred EEEecCCccccccCCCCEEEEcCC
Q 022263 82 AGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 82 ~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
. ..+.++++.++|+||.+-.
T Consensus 178 ~----~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 178 E----PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred E----ECCHHHHhhcCCEEEEccC
Confidence 2 1356788999999998754
No 350
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.94 E-value=0.083 Score=46.24 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=45.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
+.+||.|||| |.+|...+..|...+. +|++++.+... ...++.+.. .+.......+ ++.+.++|+||.+.+
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~-~l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~ 79 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTE-NLVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATN 79 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCH-HHHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCC
Confidence 3459999996 9999999998888885 89999753322 222333221 2322211112 356899999888744
No 351
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=95.93 E-value=0.015 Score=54.70 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=47.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
...+++|||+ |.+|...+..+.....+++|.++|+++.+. .+.++.+. ...+.. ..+.++++++||+|+.+.
T Consensus 127 ~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 127 DSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT 200 (325)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence 3568999995 999987666555444467999999976432 23334321 112333 246778999999999864
No 352
>PRK12743 oxidoreductase; Provisional
Probab=95.92 E-value=0.28 Score=43.65 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~ 62 (300)
.+|.|+||+|.+|.+++..|+..|. ++++.+.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~ 34 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWH 34 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeC
Confidence 4789999999999999999999887 7877754
No 353
>PRK08264 short chain dehydrogenase; Validated
Probab=95.92 E-value=0.043 Score=48.16 Aligned_cols=112 Identities=14% Similarity=0.060 Sum_probs=61.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccc---cCCCCEE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQA---LEDSDVV 100 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a---~~~aDiV 100 (300)
.++|.|+||+|.+|+.++..|++.+. .+|++++.+..+... .. ..+..+.. .+++++. +...|+|
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~---~~----~~~~~~~~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD---LG----PRVVPLQLDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh---cC----CceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 35799999999999999999998874 368888875432111 10 01111110 1122222 3358999
Q ss_pred EEcCCCCCCCC----Ccc---hhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 022263 101 IIPAGVPRKPG----MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP 147 (300)
Q Consensus 101 Ii~ag~~~~~g----~~r---~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP 147 (300)
|.++|....++ .+. .+.+..|..-...+.+.+.+. ...+.++++|..
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 134 (238)
T PRK08264 78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSV 134 (238)
T ss_pred EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCh
Confidence 99998732211 111 123344554444444444322 234556666543
No 354
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.92 E-value=0.16 Score=45.16 Aligned_cols=113 Identities=10% Similarity=0.111 Sum_probs=63.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---ccc-------ccC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQ-------ALE 95 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~-------a~~ 95 (300)
+++.|+||+|.+|.+++..|+..|. .|++.|.+... ....++.... ..+..+.. -+| .++ .+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999887 89999986421 1222232211 12222211 112 111 134
Q ss_pred CCCEEEEcCCCCCC-C--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEec
Q 022263 96 DSDVVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 96 ~aDiVIi~ag~~~~-~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~t 145 (300)
..|++|.++|.... + ..+. ...+..|.. +.+.+.+.+.+....+.++++|
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is 137 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV 137 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence 68999999985321 1 1222 223444544 4444444444434456777766
No 355
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=95.91 E-value=0.074 Score=49.65 Aligned_cols=105 Identities=17% Similarity=0.116 Sum_probs=66.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-c----ccHHHHhccccCCCcEEEEecC-Cc---ccccc--CC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T----PGVAADVGHINTRSEVAGYMGN-DQ---LGQAL--ED 96 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~----~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~--~~ 96 (300)
..+|.|+||+|++|+|.+..|...+. +++.+|.-. . -..+..+.+. ...+..+.+. .| +++.| ..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence 35899999999999999999999998 899999832 1 1112223332 1234333221 11 12222 34
Q ss_pred CCEEEEcCCCCC-CCC-CcchhhhhhhHHHHHHHHHHHHhhC
Q 022263 97 SDVVIIPAGVPR-KPG-MTRDDLFNINAGIVKDLCSAIAKYC 136 (300)
Q Consensus 97 aDiVIi~ag~~~-~~g-~~r~dl~~~N~~i~~~i~~~i~~~~ 136 (300)
-|-|++.|+... .+- +.+..+...|+--...+.+.+++++
T Consensus 78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~ 119 (343)
T KOG1371|consen 78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN 119 (343)
T ss_pred CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence 788888876532 111 2345666778888888999999887
No 356
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.91 E-value=0.036 Score=51.66 Aligned_cols=96 Identities=21% Similarity=0.366 Sum_probs=61.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
.....+|+|+| .|.||+.+|..+...|. +++.+|..... + .. . ..+ .++++.++.||+|++..
T Consensus 119 ~L~gktvgIiG-~G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~-~~--~-~~~---~~l~ell~~aDiv~~~l 181 (303)
T PRK06436 119 LLYNKSLGILG-YGGIGRRVALLAKAFGM--NIYAYTRSYVN-------D-GI--S-SIY---MEPEDIMKKSDFVLISL 181 (303)
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCC--EEEEECCCCcc-------c-Cc--c-ccc---CCHHHHHhhCCEEEECC
Confidence 44567999999 59999999988776677 89999974321 0 00 0 001 25678899999999985
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCcc
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS 150 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~ 150 (300)
... + +++ .++. .+.+....|++++|+++ .++|.
T Consensus 182 p~t--~-~T~--------~li~--~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 182 PLT--D-ETR--------GMIN--SKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred CCC--c-hhh--------cCcC--HHHHhcCCCCeEEEECCCccccCH
Confidence 321 1 111 1111 23344445789999984 56664
No 357
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.90 E-value=0.032 Score=53.58 Aligned_cols=63 Identities=21% Similarity=0.432 Sum_probs=45.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
...++|+|||. |+||+.++..|...|. ++..+|...... .+ ... + .++++.++.||+|++..-
T Consensus 114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~~-----~~-----~~~-~---~~L~ell~~sDiI~lh~P 176 (378)
T PRK15438 114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRADR-----GD-----EGD-F---RSLDELVQEADILTFHTP 176 (378)
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCccccc-----cc-----ccc-c---CCHHHHHhhCCEEEEeCC
Confidence 45569999995 9999999999988887 999999632210 00 001 1 256788899999998653
No 358
>PRK08177 short chain dehydrogenase; Provisional
Probab=95.90 E-value=0.029 Score=49.12 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=31.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~ 65 (300)
|++|.|+||+|.+|+.++..|+..|. +|+++|++..
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~ 36 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGW--QVTATVRGPQ 36 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCCc
Confidence 35799999999999999999999887 8999998653
No 359
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=95.90 E-value=0.14 Score=52.89 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++|.|+||+|.+|.+++..|++.|. +|++.|++.
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~ 448 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNL 448 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCH
Confidence 45799999999999999999999887 899999864
No 360
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.89 E-value=0.047 Score=53.92 Aligned_cols=134 Identities=18% Similarity=0.187 Sum_probs=81.1
Q ss_pred cccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHh-ccccCCCcEEEEecCCcccc
Q 022263 14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV-GHINTRSEVAGYMGNDQLGQ 92 (300)
Q Consensus 14 ~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl-~~~~~~~~v~~~~~t~d~~~ 92 (300)
.|...|.+.... ||.|+|+ |..|.+++..|...|. ++..+|.+.... .++ ... .+..+.+.++ .+
T Consensus 5 ~~~~~~~~~~~~----~v~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~--~~~l~~~----gi~~~~~~~~-~~ 70 (473)
T PRK00141 5 VPLSALPQELSG----RVLVAGA-GVSGRGIAAMLSELGC--DVVVADDNETAR--HKLIEVT----GVADISTAEA-SD 70 (473)
T ss_pred ChhhhcccccCC----eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCChHHH--HHHHHhc----CcEEEeCCCc-hh
Confidence 466666665555 8999995 9999999999999887 899999754321 122 221 2333333222 24
Q ss_pred ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHh-----hC-CCeEEEEe--cCCCcccHHHHHHHHHHhC
Q 022263 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-----YC-PNAIVNMI--SNPVNSTVPIAAEVFKKAG 163 (300)
Q Consensus 93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~-----~~-p~a~viv~--tNP~d~~~~i~~~~~~~~~ 163 (300)
.+.++|+||.+.|++... ......-+.+++++.++.-.... +. |. .+|-+ ||==.+.+.+++++++..+
T Consensus 71 ~~~~~d~vV~Spgi~~~~-p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~-~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 71 QLDSFSLVVTSPGWRPDS-PLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPR-TWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred HhcCCCEEEeCCCCCCCC-HHHHHHHHCCCceeeHHHHHHHhhhhhccCCCC-CEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 578899999999887422 12222334566777655543221 21 32 23334 5544556677788887765
No 361
>PRK08589 short chain dehydrogenase; Validated
Probab=95.89 E-value=0.29 Score=44.13 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=30.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~ 63 (300)
.+++.|+||+|.+|.+++..|+..|. +|++.+++
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~ 39 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIA 39 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCc
Confidence 45799999999999999999999887 89999986
No 362
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.88 E-value=0.032 Score=51.58 Aligned_cols=96 Identities=18% Similarity=0.241 Sum_probs=60.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
...+|+|+|+ |.+|..++..|...|. +|.++|++..+.. ...... ..... ..++.+.++++|+||.+...
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~~--~~~~~g----~~~~~-~~~l~~~l~~aDiVint~P~ 219 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADLA--RITEMG----LIPFP-LNKLEEKVAEIDIVINTIPA 219 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHCC----Ceeec-HHHHHHHhccCCEEEECCCh
Confidence 4469999995 9999999999998886 8999998653211 111111 11111 13456778999999998532
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe-cCCCcc
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS 150 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~d~ 150 (300)
+ ++ + .+ .+....|+++++.+ ++|-.+
T Consensus 220 ~---------ii--~----~~---~l~~~k~~aliIDlas~Pg~t 246 (287)
T TIGR02853 220 L---------VL--T----AD---VLSKLPKHAVIIDLASKPGGT 246 (287)
T ss_pred H---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCCC
Confidence 1 11 1 11 23334567888766 678664
No 363
>PRK09242 tropinone reductase; Provisional
Probab=95.87 E-value=0.086 Score=46.94 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=48.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc----------ccccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ----------LGQAL 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d----------~~~a~ 94 (300)
.+++.|+||+|.+|..++..|+..|. +|++.+++... ....++........+..+... .+ ..+.+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999887 89999986432 122233322111122221110 11 11234
Q ss_pred CCCCEEEEcCCCC
Q 022263 95 EDSDVVIIPAGVP 107 (300)
Q Consensus 95 ~~aDiVIi~ag~~ 107 (300)
...|++|.++|..
T Consensus 87 g~id~li~~ag~~ 99 (257)
T PRK09242 87 DGLHILVNNAGGN 99 (257)
T ss_pred CCCCEEEECCCCC
Confidence 5789999999863
No 364
>PRK07074 short chain dehydrogenase; Provisional
Probab=95.87 E-value=0.05 Score=48.40 Aligned_cols=34 Identities=44% Similarity=0.497 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++.|+||+|.+|..++..|++.+. +++++|.+.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~ 36 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA 36 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 3699999999999999999998886 899999854
No 365
>PRK07904 short chain dehydrogenase; Provisional
Probab=95.87 E-value=0.07 Score=47.85 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=64.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcc---cHHHHhccccCCCcEEEEec-CCc---c----cccc
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG-NDQ---L----GQAL 94 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~-t~d---~----~~a~ 94 (300)
+.++|.|+||+|.+|.+++..|++.+ . .|++.+++... ....++..... ..+..+.. -+| . ++..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHH
Confidence 45689999999999999999988874 5 89999886432 12233432111 02222111 011 1 1111
Q ss_pred --CCCCEEEEcCCCCCCCCCcc------hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEec
Q 022263 95 --EDSDVVIIPAGVPRKPGMTR------DDLFNINAG----IVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 95 --~~aDiVIi~ag~~~~~g~~r------~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~t 145 (300)
.+.|++|..+|......... .+.+..|.. +.+.+.+.+.+.+. +.++++|
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~is 145 (253)
T PRK07904 84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMS 145 (253)
T ss_pred hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEe
Confidence 37999999888753221111 123455543 33556777766554 4555554
No 366
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.86 E-value=0.028 Score=53.23 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
...||.|+|+ |.+|+.++..|+..|+ ++|.|+|.+.
T Consensus 23 ~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 4458999996 9999999999999886 6899999863
No 367
>PRK07577 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.035 Score=48.54 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=30.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
++|.|+||+|.+|..++..|+..|. ++++++++.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~ 37 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA 37 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 5899999999999999999999886 899998854
No 368
>PRK06949 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.09 Score=46.65 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++|.|+||+|.+|++++..|+..+. +|++.+++.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~ 43 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV 43 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 46899999999999999999998887 899998864
No 369
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.15 Score=45.24 Aligned_cols=114 Identities=19% Similarity=0.242 Sum_probs=63.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cc-------ccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LG-------QAL 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~a~ 94 (300)
.+++.|+||+|.+|.+++..|+..|. +|++.+++... ....++.+.. ..+..+.. -+| .+ +.+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 34799999999999999999999887 89999886432 1222232211 12222111 111 11 123
Q ss_pred CCCCEEEEcCCCCCCC---CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEec
Q 022263 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~t 145 (300)
...|++|.++|..... ..+. ...+..|+. +.+.+.+.+.+....+.+++++
T Consensus 85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 145 (253)
T PRK05867 85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 4789999999864311 1111 123344544 3444455554444345565554
No 370
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.85 E-value=0.056 Score=50.84 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=58.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ 103 (300)
....++|+|||. |.||..++..+. .-|. +|+.+|.........++ .++ + .++++.++.||+|++.
T Consensus 142 ~L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-------~~~-~---~~l~ell~~sDvv~lh 207 (323)
T PRK15409 142 DVHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-------NAR-Y---CDLDTLLQESDFVCII 207 (323)
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-------CcE-e---cCHHHHHHhCCEEEEe
Confidence 456679999995 999999998876 4555 78888864321111111 112 1 2567889999999997
Q ss_pred CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN 146 (300)
.... + ++..++. .+.+..-.|++++|+++-
T Consensus 208 ~plt--~---------~T~~li~--~~~l~~mk~ga~lIN~aR 237 (323)
T PRK15409 208 LPLT--D---------ETHHLFG--AEQFAKMKSSAIFINAGR 237 (323)
T ss_pred CCCC--h---------HHhhccC--HHHHhcCCCCeEEEECCC
Confidence 5321 1 1222221 123344458999999863
No 371
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=95.84 E-value=0.16 Score=45.50 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=30.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+++.|+||+|.+|.+++..|+..+. ++++.|.+.
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~ 44 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQ 44 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 5799999999999999999999887 789988754
No 372
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.84 E-value=0.11 Score=53.28 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=82.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcc----ccccCCCCEEEEc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIP 103 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~----~~a~~~aDiVIi~ 103 (300)
..+|.|+|. |.+|+.++..|...+. +++++|.++.+-+ .+.+... .+-.-.+ ++. +..+++||.+|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~v~--~~~~~g~--~v~~GDa-t~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDHIE--TLRKFGM--KVFYGDA-TRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHHHH--HHHhcCC--eEEEEeC-CCHHHHHhcCCCcCCEEEEE
Confidence 368999996 9999999999998887 8999998764322 2222211 1211111 222 2346799999988
Q ss_pred CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec-CCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHH
Q 022263 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182 (300)
Q Consensus 104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~ 182 (300)
...+ +.| ..++..+++..|+..++.-+ |+.+ .+.++..| -+.++--+...+.++-
T Consensus 472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~------~~~L~~~G---ad~v~~e~~e~sl~l~ 527 (621)
T PRK03562 472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKSG 527 (621)
T ss_pred eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEehhhHhHHHHHH
Confidence 4321 334 34555677778887665544 4433 22344444 4445443444555666
Q ss_pred HHHHHHcCCCCCce
Q 022263 183 TFYAGKANVNVAEV 196 (300)
Q Consensus 183 ~~la~~l~v~~~~V 196 (300)
+.+-+.+|++++++
T Consensus 528 ~~~L~~lg~~~~~~ 541 (621)
T PRK03562 528 RLVLESLGLGPYEA 541 (621)
T ss_pred HHHHHHcCCCHHHH
Confidence 66667787776544
No 373
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.83 E-value=0.081 Score=51.95 Aligned_cols=128 Identities=17% Similarity=0.334 Sum_probs=75.1
Q ss_pred CCceEEEEcCCCChHHH-HHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~-~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
+.+||.|+|. |..|.+ +|..|...|. ++...|.+... ...+|... .+..+.+. + .+.+.++|+||.+.|
T Consensus 6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~~~-~-~~~~~~~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLEL----GAIIFIGH-D-AENIKDADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHC----CCEEeCCC-C-HHHCCCCCEEEECCC
Confidence 4458999996 999988 7989999998 89999986532 22234332 23322222 2 255789999999988
Q ss_pred CCCCCCCcchhhhhhhHHHHHH--HHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263 106 VPRKPGMTRDDLFNINAGIVKD--LCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE 167 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~--i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~ 167 (300)
.|...- ......+.+++++.+ ++..+.+. ...+-|--||==.+.+.+++++++..| +.+
T Consensus 76 i~~~~~-~~~~a~~~~i~i~~~~e~~~~~~~~-~~~I~ITGTnGKTTTt~ll~~iL~~~g-~~~ 136 (461)
T PRK00421 76 IPDDNP-ELVAARELGIPVVRRAEMLAELMRF-RTSIAVAGTHGKTTTTSLLAHVLAEAG-LDP 136 (461)
T ss_pred CCCCCH-HHHHHHHCCCcEEeHHHHHHHHHcc-CcEEEEECCCCHHHHHHHHHHHHHhcC-CCC
Confidence 874211 112222445666533 32222211 122222235655566677888888776 443
No 374
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=95.81 E-value=0.063 Score=47.40 Aligned_cols=115 Identities=17% Similarity=0.303 Sum_probs=61.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-c--ccHHHHhccccCCCcEEEEec-CCc---cccc-------
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGVAADVGHINTRSEVAGYMG-NDQ---LGQA------- 93 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a------- 93 (300)
..++.|+||+|.+|++++..|+..+. ++++.+... . +....++.+.. ..+..+.. .+| +.++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999998886 676654322 1 11122332211 12222111 111 1122
Q ss_pred cCCCCEEEEcCCCCCCCCC------cchhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecC
Q 022263 94 LEDSDVVIIPAGVPRKPGM------TRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g~------~r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 146 (300)
+...|+||++||....... .-.+.+..|..-...+.+.+.++ ...+.+++++.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 143 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS 143 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 2347999999987432111 12233455655444444444432 23445665554
No 375
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.81 E-value=0.035 Score=53.33 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=45.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
...++|+|||. |+||+.++..+...|. +++.+|...... .. ... + .++++.+++||+|++...
T Consensus 114 l~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~~-----~~-----~~~-~---~~l~ell~~aDiV~lh~P 176 (381)
T PRK00257 114 LAERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQEA-----EG-----DGD-F---VSLERILEECDVISLHTP 176 (381)
T ss_pred cCcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCccccc-----cc-----Ccc-c---cCHHHHHhhCCEEEEeCc
Confidence 34569999995 9999999999988887 999999743210 00 011 1 256688899999998753
No 376
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.79 E-value=0.061 Score=52.65 Aligned_cols=128 Identities=20% Similarity=0.218 Sum_probs=80.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
.+||+|+|- |.-|.+++..|...|. ++..+|.++......+.. .....+....+..+. +...++|+||..-|.|
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~~~--~~~~~i~~~~g~~~~-~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAAQP--LLLEGIEVELGSHDD-EDLAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhhhh--hhccCceeecCccch-hccccCCEEEECCCCC
Confidence 679999995 9999999999999887 999999865431101110 011133333344444 6789999999998876
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHhh--CCCeEEEEecCCCcccHHHHHHHHHHhC
Q 022263 108 RKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPVNSTVPIAAEVFKKAG 163 (300)
Q Consensus 108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~d~~~~i~~~~~~~~~ 163 (300)
...-+ -.......++++-++--..+.. +| -+-|--||==.+.|.+++++++..|
T Consensus 81 ~~~p~-v~~A~~~gi~i~~dieL~~r~~~~~p-~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 81 PTHPL-VEAAKAAGIEIIGDIELFYRLSGEAP-IVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred CCCHH-HHHHHHcCCcEEeHHHHHHHhcCCCC-EEEEECCCchHHHHHHHHHHHHhcC
Confidence 32211 1112245566666665555543 33 2223336766677778888888776
No 377
>PRK06500 short chain dehydrogenase; Provisional
Probab=95.76 E-value=0.16 Score=44.62 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=58.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEe-cCCcc----------ccccCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL----------GQALED 96 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~a~~~ 96 (300)
.++|.|+||+|.+|+.++..|+..+. ++++++.+..... ++.+.. ...+..+. ...|. .+.+..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~--~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLE--AARAEL-GESALVIRADAGDVAAQKALAQALAEAFGR 80 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHH--HHHHHh-CCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 35899999999999999999999887 8999987542111 111100 01121111 01111 122357
Q ss_pred CCEEEEcCCCCCCCC---Ccc---hhhhhhhHHHHHHHHHHHHh
Q 022263 97 SDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAK 134 (300)
Q Consensus 97 aDiVIi~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~ 134 (300)
.|++|+.+|...... .+. ...+..|..-...+.+.+.+
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~ 124 (249)
T PRK06500 81 LDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLP 124 (249)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 899999998643211 111 22455666656666666654
No 378
>PRK12746 short chain dehydrogenase; Provisional
Probab=95.75 E-value=0.19 Score=44.41 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEe
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D 61 (300)
.++|.|+||+|.+|++++..|+.+|. ++.+.+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~ 37 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHY 37 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEc
Confidence 35899999999999999999998886 676653
No 379
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.74 E-value=0.031 Score=51.42 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=43.8
Q ss_pred EEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 33 IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
|||. |.+|..++..|...++ +|.+||+++.+.. ++.... ... +.++.++++++|+||++..
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~~~--~l~~~g----~~~---~~s~~~~~~~advVil~vp 61 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDAVE--EAVAAG----AQA---AASPAEAAEGADRVITMLP 61 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHHHH--HHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence 5894 9999999999999887 8999998654322 233211 111 2356678999999999864
No 380
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.73 E-value=0.16 Score=46.75 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=77.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCCcEEEEec----CCccc-------cc
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG----NDQLG-------QA 93 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~-------~a 93 (300)
..+.|.|+||+.-+|.++|+.|+..|. .++|+.... .+-...++.......++..... .++.+ .-
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 445789999999999999999999997 778887643 2222244444332211221110 11111 34
Q ss_pred cCCCCEEEEcCCCCCCCCC-c------chhhhhh----hHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 94 LEDSDVVIIPAGVPRKPGM-T------RDDLFNI----NAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g~-~------r~dl~~~----N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
+.+.|+.|..||..+ .+. + ..+.++. .+-+.+...+.+++.+ ++.|++++....
T Consensus 89 fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG 153 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAG 153 (282)
T ss_pred cCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccc
Confidence 689999999999876 331 1 1223343 4577899999999988 899888877666
No 381
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.73 E-value=0.13 Score=45.94 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=30.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~ 63 (300)
.++|.|+||+|.+|..++..|+..|. .+++++.+
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHG 48 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence 45899999999999999999999887 88999876
No 382
>PRK09186 flagellin modification protein A; Provisional
Probab=95.71 E-value=0.15 Score=45.13 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=30.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++|.|+||+|.+|.+++..|+..+. ++++.++++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~ 38 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK 38 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence 35899999999999999999999887 899998754
No 383
>PRK08226 short chain dehydrogenase; Provisional
Probab=95.71 E-value=0.084 Score=47.12 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
..++.|+||+|.+|+.++..|+..|. ++++++.+.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~ 40 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISP 40 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence 35899999999999999999999887 899998854
No 384
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.71 E-value=0.076 Score=46.48 Aligned_cols=115 Identities=19% Similarity=0.304 Sum_probs=62.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEec-CCc---ccc-------c
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG-NDQ---LGQ-------A 93 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~-t~d---~~~-------a 93 (300)
.++|.|+||+|.+|++++..|+..|. ++++...+... ....++.... ..+..+.. -++ +.+ .
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999998886 77666654321 1112222111 11221110 111 111 1
Q ss_pred cCCCCEEEEcCCCCCCCC---Ccch---hhhhhhHHHHHHHHHHHHhhC---CCeEEEEecC
Q 022263 94 LEDSDVVIIPAGVPRKPG---MTRD---DLFNINAGIVKDLCSAIAKYC---PNAIVNMISN 146 (300)
Q Consensus 94 ~~~aDiVIi~ag~~~~~g---~~r~---dl~~~N~~i~~~i~~~i~~~~---p~a~viv~tN 146 (300)
+.+.|.||+++|...... .+.. ..+..|......+.+.+.++. ....+++++.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss 142 (248)
T PRK05557 81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS 142 (248)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 246899999998643211 1111 223456665555666665442 2345555554
No 385
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=95.70 E-value=0.072 Score=46.49 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=63.2
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec--C--Ccccccc-------CC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG--N--DQLGQAL-------ED 96 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~--t--~d~~~a~-------~~ 96 (300)
|.|+|++|.+|+.++..|.+++. ++++.+.+.. .....++.+... .+..+.. + .++++++ ..
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGV--KALGVVCDVSDREDVKAVVEEIEEELGP 76 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999887 8999987531 112223332211 1221111 1 1122222 34
Q ss_pred CCEEEEcCCCCCCC---C---CcchhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 022263 97 SDVVIIPAGVPRKP---G---MTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP 147 (300)
Q Consensus 97 aDiVIi~ag~~~~~---g---~~r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP 147 (300)
.|+||+.+|..... + ....+.+..|..-...+.+.+.++ ...+.++++|..
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 136 (239)
T TIGR01830 77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV 136 (239)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 69999999864211 1 112334566776666666665543 224456656543
No 386
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.70 E-value=0.091 Score=47.01 Aligned_cols=35 Identities=40% Similarity=0.550 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
..+|.|+||+|.+|..++..|+..|. +|++++++.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~ 39 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNA 39 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 35799999999999999999999887 899999864
No 387
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.69 E-value=0.036 Score=54.00 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=45.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--C--Cccccc-cCCCCEEEEc
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N--DQLGQA-LEDSDVVIIP 103 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t--~d~~~a-~~~aDiVIi~ 103 (300)
|||.|+|+ |.+|..++..|...+. +++++|.++.... .+.+.. .+..+.+ + ..++++ ++++|.||++
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~~--~~~~~~---~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERLR--RLQDRL---DVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHHH--HHHhhc---CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 68999996 9999999999998887 8999998654322 222100 1111111 1 123344 7899999997
Q ss_pred CC
Q 022263 104 AG 105 (300)
Q Consensus 104 ag 105 (300)
.+
T Consensus 73 ~~ 74 (453)
T PRK09496 73 TD 74 (453)
T ss_pred cC
Confidence 53
No 388
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=95.69 E-value=0.48 Score=42.21 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=63.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEe-cCCccc----------c
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQLG----------Q 92 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~-~t~d~~----------~ 92 (300)
+.+++.|+||+|.+|..++..|+..+. .+++...... .....++.... ..+..+. .-+|.+ +
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999886 6777765332 11122232211 1121111 111211 1
Q ss_pred ccCCCCEEEEcCCCCCCC---CCcch---hhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263 93 ALEDSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 93 a~~~aDiVIi~ag~~~~~---g~~r~---dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN 146 (300)
.+...|++|..+|..... ..+.. ..+..|+. +.+...+.+.+....+.+|++|.
T Consensus 82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS 145 (261)
T PRK08936 82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS 145 (261)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 123579999999864321 11111 23445533 33555666666555566666654
No 389
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.68 E-value=0.012 Score=54.10 Aligned_cols=105 Identities=24% Similarity=0.314 Sum_probs=68.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhC----CCC-----CEEEEEecCCc--ccHHHHhcccc--CCCcEEEEecCCcccccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIANT--PGVAADVGHIN--TRSEVAGYMGNDQLGQAL 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~----~~~-----~el~L~D~~~~--~g~~~dl~~~~--~~~~v~~~~~t~d~~~a~ 94 (300)
.-||.|.|| |..|..++..|... |+- +.++++|.+-. +.. .||.+.. +-..... ....++.+++
T Consensus 25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r-~~l~~~~~~~a~~~~~-~~~~~L~e~i 101 (279)
T cd05312 25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR-KDLTPFKKPFARKDEE-KEGKSLLEVV 101 (279)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCC-CcchHHHHHHHhhcCc-ccCCCHHHHH
Confidence 349999996 99999998877654 652 58999998531 110 1111111 0000000 0124788999
Q ss_pred C--CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 95 E--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 95 ~--~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
+ ++|++|=+.+.+ |- +-+++.+.|.+++++.+|+-.|||..
T Consensus 102 ~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~ 144 (279)
T cd05312 102 KAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTS 144 (279)
T ss_pred HhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 9 899988765433 21 23678888999999999999999975
No 390
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.68 E-value=0.098 Score=47.48 Aligned_cols=76 Identities=26% Similarity=0.272 Sum_probs=42.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ 103 (300)
.+|||+|.||+|.||+.+...+.+.+-..=+.-+|.......-.|.........+... .++|+.....++|++|=.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~-v~~~~~~~~~~~DV~IDF 76 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVP-VTDDLLLVKADADVLIDF 76 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCce-eecchhhcccCCCEEEEC
Confidence 3789999999999999999988887643223445553321111122222111111111 123445667889987753
No 391
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.65 E-value=0.026 Score=51.65 Aligned_cols=69 Identities=23% Similarity=0.233 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhC--CCCCEEE-EEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLN--PLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~--~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ 103 (300)
+++||+|||. |.+|..++..|... ++ ++. ++|.++.+.. ++..... .... .+++++.+.++|+|+++
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~a~--~~a~~~g--~~~~---~~~~eell~~~D~Vvi~ 74 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQRHA--DFIWGLR--RPPP---VVPLDQLATHADIVVEA 74 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHHHH--HHHHhcC--CCcc---cCCHHHHhcCCCEEEEC
Confidence 4589999995 99999999888763 33 554 7787643322 2222110 0111 13566778899999999
Q ss_pred CC
Q 022263 104 AG 105 (300)
Q Consensus 104 ag 105 (300)
+.
T Consensus 75 tp 76 (271)
T PRK13302 75 AP 76 (271)
T ss_pred CC
Confidence 64
No 392
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.64 E-value=0.055 Score=48.79 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+..||+|+|+ |.+|+.++..|+..|+ ++|.++|-+.
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 4569999996 9999999999999885 6899999853
No 393
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.63 E-value=0.063 Score=49.81 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=46.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
...||+|+|+ |.+|..++..|...|. ++..+|++... ..+.++ . .+.. ...++.+.++++|+||.+.
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G----~~~~-~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G----LSPF-HLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C----Ceee-cHHHHHHHhCCCCEEEECC
Confidence 4569999995 9999999999998885 89999986432 122211 1 1111 1134557789999999985
No 394
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=95.62 E-value=0.24 Score=44.01 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+.++|.|+||+|.+|.+++..|...|. ++++.|.+.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~ 45 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINA 45 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 346899999999999999999999887 889998754
No 395
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.029 Score=50.55 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=62.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEE-EecCCc-------cccccCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAG-YMGNDQ-------LGQALEDS 97 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~-~~~t~d-------~~~a~~~a 97 (300)
.++|.|+||+|.+|..++..|+..|. .+++.++++.... ..++.... .+.. .....+ ..+.+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVV---GGPLDVTDPASFAAFLDAVEADLGPI 79 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccce---EEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 35899999999999999999999887 7999987543211 11221110 0110 000001 11224578
Q ss_pred CEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263 98 DVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 98 DiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN 146 (300)
|++|.+||...... .+ -...+..|.. +.+.+.+.+.+. ..+.++++|.
T Consensus 80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS 137 (273)
T PRK07825 80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVAS 137 (273)
T ss_pred CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcC
Confidence 99999998743211 11 1223445554 444555555543 3456666654
No 396
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.25 Score=44.11 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=63.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEe-cCCcc----------ccccC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL----------GQALE 95 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~a~~ 95 (300)
..+.|+||+|.+|.+++..|+..|. +|++.+++.. .....++........+..+. .-+|. .+.+.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999887 8999998643 22222332211111222211 01121 11235
Q ss_pred CCCEEEEcCCCCCCCC---Ccc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecC
Q 022263 96 DSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 96 ~aDiVIi~ag~~~~~g---~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tN 146 (300)
..|++|..||...... .+. ...+..| ....+.+.+.+++.. .+.+++++.
T Consensus 87 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS 146 (265)
T PRK07062 87 GVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNS 146 (265)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEecc
Confidence 6899999998642111 111 1122223 334566666665433 455666553
No 397
>PRK07985 oxidoreductase; Provisional
Probab=95.58 E-value=0.12 Score=47.47 Aligned_cols=115 Identities=19% Similarity=0.140 Sum_probs=62.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---HHHHhccccCCCcEEEEec-CCcc----------cccc
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMG-NDQL----------GQAL 94 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~ 94 (300)
+++.|+||+|.+|.+++..|+..|. ++++.+.+.... ...++.... ...+..+.. -+|. .+.+
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEEC-GRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHc-CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999987 888887643211 111111111 111221111 1121 1224
Q ss_pred CCCCEEEEcCCCCCC--C--CCcc---hhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263 95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN 146 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~--~--g~~r---~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN 146 (300)
...|++|+.||.... + ..+. ...+..|+.-...+.+.+.++ ...+.+|++|.
T Consensus 127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS 186 (294)
T PRK07985 127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS 186 (294)
T ss_pred CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence 567999999986321 1 1122 233556665444444444433 12466666664
No 398
>PLN02306 hydroxypyruvate reductase
Probab=95.57 E-value=0.072 Score=51.33 Aligned_cols=104 Identities=20% Similarity=0.304 Sum_probs=60.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCcccHH---HHhccc---cCCCcEEEEecCCccccccCCC
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVA---ADVGHI---NTRSEVAGYMGNDQLGQALEDS 97 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~~g~~---~dl~~~---~~~~~v~~~~~t~d~~~a~~~a 97 (300)
+....+|+|||. |.||+.+|..+. .-|. +|..||........ ..+... ......... ...++++.++.|
T Consensus 162 ~L~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~L~ell~~s 237 (386)
T PLN02306 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWK-RASSMEEVLREA 237 (386)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhccccccccccccccc-ccCCHHHHHhhC
Confidence 455679999995 999999998875 4465 89999975321110 011000 000001100 123688999999
Q ss_pred CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
|+|++..-. .+ ++-.++.+ +.+....|++++|+++
T Consensus 238 DiV~lh~Pl--t~---------~T~~lin~--~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 238 DVISLHPVL--DK---------TTYHLINK--ERLALMKKEAVLVNAS 272 (386)
T ss_pred CEEEEeCCC--Ch---------hhhhhcCH--HHHHhCCCCeEEEECC
Confidence 999997432 11 12222221 3344445799999985
No 399
>PRK08324 short chain dehydrogenase; Validated
Probab=95.57 E-value=0.17 Score=52.31 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=31.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
..++|.|+||+|.+|..++..|+..|. +|+++|++.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~ 456 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDE 456 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCH
Confidence 346899999999999999999999887 899999865
No 400
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.55 E-value=0.011 Score=53.61 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=76.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCC----CC-----CEEEEEecCCc----ccHHHHhcccc--CCCcEEEEecCCcccc
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNP----LV-----SRLALYDIANT----PGVAADVGHIN--TRSEVAGYMGNDQLGQ 92 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~----~~-----~el~L~D~~~~----~g~~~dl~~~~--~~~~v~~~~~t~d~~~ 92 (300)
..||.+.|| |..|..++.+|...+ +- +.++++|..-. +....+..... +...-. ...++.+
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~---~~~~L~e 100 (254)
T cd00762 25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPER---ESGDLED 100 (254)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCccc---ccCCHHH
Confidence 359999996 999999998776533 21 38999998531 11100100000 000111 1247889
Q ss_pred ccC--CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc--ccHHHHHHHHHHhCCCCCC
Q 022263 93 ALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEK 168 (300)
Q Consensus 93 a~~--~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~~~i~~~~~~~~~~~~~~ 168 (300)
+++ ++|++|=+.+.+ | -+-+++.+.|.+++++.+|+=.|||.. ..++ -++++.+ +..
T Consensus 101 av~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp--e~a~~~t---~G~ 161 (254)
T cd00762 101 AVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA--EEAYTAT---EGR 161 (254)
T ss_pred HHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH--HHHHhhc---CCC
Confidence 999 999988776543 2 123678888999999999999999986 3332 2233322 234
Q ss_pred cEEEee
Q 022263 169 KLFGVT 174 (300)
Q Consensus 169 kviG~t 174 (300)
.++++.
T Consensus 162 ai~AtG 167 (254)
T cd00762 162 AIFASG 167 (254)
T ss_pred EEEEEC
Confidence 677774
No 401
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.54 E-value=0.03 Score=53.67 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=49.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~a 104 (300)
.++.||.|+|+ |.+|...+..+...|. ++..+|.+..+.+ .+.... ...+.. +....++.+.++++|+||.++
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~~--~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a~ 238 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRLR--QLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGAV 238 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHhc-CceeEeccCCHHHHHHHHccCCEEEEcc
Confidence 35668999996 9999999999988886 7999998653222 111110 011111 111124567789999999988
Q ss_pred CCC
Q 022263 105 GVP 107 (300)
Q Consensus 105 g~~ 107 (300)
+.+
T Consensus 239 ~~~ 241 (370)
T TIGR00518 239 LIP 241 (370)
T ss_pred ccC
Confidence 654
No 402
>PRK07478 short chain dehydrogenase; Provisional
Probab=95.54 E-value=0.24 Score=43.98 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=81.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------cC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LE 95 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~ 95 (300)
+++.|+||+|.+|..++..|+..|. +|++.+.++.+ ....++.+.. ..+..+.. -++ .++. +.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999887 89999885422 1222333221 11222111 111 1111 33
Q ss_pred CCCEEEEcCCCCC--CC--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCC
Q 022263 96 DSDVVIIPAGVPR--KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT 164 (300)
Q Consensus 96 ~aDiVIi~ag~~~--~~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~ 164 (300)
..|++|..||... .+ ..+. ...+..|.. ..+.+.+.+.+. ..+.+++++..... .. .
T Consensus 83 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS~~~~----------~~-~ 150 (254)
T PRK07478 83 GLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTSTFVGH----------TA-G 150 (254)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEechHhh----------cc-C
Confidence 6899999998632 22 1121 233555653 445555555543 33455555532210 00 1
Q ss_pred CCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263 165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (300)
Q Consensus 165 ~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~ 201 (300)
.+..-.++.+..-...+-..++++++ +..|++..+
T Consensus 151 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v 185 (254)
T PRK07478 151 FPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVNAL 185 (254)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence 33333344443323345566667664 345555544
No 403
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.54 E-value=0.047 Score=53.72 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=60.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
....+|+|+|. |.+|..+|..+...|. +|..+|+++.+. .+.. + . .+. .+++++++.+|+||.+.
T Consensus 252 LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~-G----~~~----~~leell~~ADIVI~at 317 (476)
T PTZ00075 252 IAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E-G----YQV----VTLEDVVETADIFVTAT 317 (476)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c-C----cee----ccHHHHHhcCCEEEECC
Confidence 34568999995 9999999999988776 899998865432 1111 1 1 111 24567899999999985
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP 147 (300)
|.+ .++. .+.+....|.+++++++-.
T Consensus 318 Gt~---------------~iI~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 318 GNK---------------DIIT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred Ccc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence 421 1121 1234445589999998765
No 404
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.27 Score=46.09 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=63.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L 94 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~ 94 (300)
..+|.|+||+|.+|..++..|+..|. +|+++++++.. ....++..... .+..+.. -+| .+++ +
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 35799999999999999999999887 89999985421 12223322111 1221110 112 1111 3
Q ss_pred CCCCEEEEcCCCCCCC---CCcch---hhhhhh----HHHHHHHHHHHHhhCCCeEEEEecC
Q 022263 95 EDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r~---dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tN 146 (300)
...|++|..+|..... ..+.. ..+..| ....+.+.+.+.+.. .+.+|+++.
T Consensus 84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS 144 (334)
T PRK07109 84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS 144 (334)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence 4689999999864211 11111 122333 344556666665543 355666543
No 405
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.53 E-value=0.078 Score=47.20 Aligned_cols=114 Identities=16% Similarity=0.228 Sum_probs=61.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCcccc-------ccCCCCE
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQ-------ALEDSDV 99 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~-------a~~~aDi 99 (300)
.+++.|+||+|.+|..++..|++.|. ++++.+.+.. ....++.+.... .+.. .....+.++ .+...|+
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~~-~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGVF-TIKCDVGNRDQVKKSKEVVEKEFGRVDV 82 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCCe-EEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 35899999999999999999999887 7887765332 111122221100 0110 000011111 2346899
Q ss_pred EEEcCCCCCC-C--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263 100 VIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 100 VIi~ag~~~~-~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN 146 (300)
+|.++|.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.+|+++.
T Consensus 83 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS 138 (255)
T PRK06463 83 LVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIAS 138 (255)
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence 9999987431 1 1121 123344544 356666666543 3455665553
No 406
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.53 E-value=0.028 Score=49.07 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA 58 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~ 58 (300)
|||+||||+|.+|+.++..+.+.|+ ++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~--~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL--GVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC--EEE
Confidence 6999999999999999999998887 554
No 407
>PRK08703 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.89 Score=39.86 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.++|.|+||+|.+|.+++..|+..|. +|++++++.
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~ 40 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ 40 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence 45899999999999999999999887 899999865
No 408
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.51 E-value=0.071 Score=52.37 Aligned_cols=124 Identities=23% Similarity=0.305 Sum_probs=73.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---HHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
.||.|+|. |..|.+++..|...|. ++..+|.++... ...++... .+..+.+. +..+.+.++|+||.+.|
T Consensus 15 ~~i~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~----gi~~~~~~-~~~~~~~~~dlVV~Spg 86 (458)
T PRK01710 15 KKVAVVGI-GVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKEL----GVKLVLGE-NYLDKLDGFDVIFKTPS 86 (458)
T ss_pred CeEEEEcc-cHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhC----CCEEEeCC-CChHHhccCCEEEECCC
Confidence 48999995 9999999999999997 899999854211 11223322 23333222 22355789999999988
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe--cCCCcccHHHHHHHHHHhC
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG 163 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~~~i~~~~~~~~~ 163 (300)
.+...- ......+.+++++.++- .+.+..+ ..+|-+ ||==.+.+.+++.+++..+
T Consensus 87 i~~~~p-~~~~a~~~~i~i~s~~e-~~~~~~~-~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 87 MRIDSP-ELVKAKEEGAYITSEME-EFIKYCP-AKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred CCCCch-HHHHHHHcCCcEEechH-HhhhhcC-CCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 764221 12222345677765542 2323322 223334 4544455567777777654
No 409
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.50 E-value=0.17 Score=44.87 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+.++|.|+||+|.+|..++..|+..|. .|+++|.+.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~ 45 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNA 45 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCH
Confidence 456899999999999999999998887 899999864
No 410
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.50 E-value=0.037 Score=49.23 Aligned_cols=36 Identities=33% Similarity=0.546 Sum_probs=31.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
...||+|+|+ |.+|+.++..|+..|+ +++.|+|-+.
T Consensus 20 ~~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 3459999995 9999999999999885 6899999853
No 411
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.50 E-value=0.0083 Score=57.43 Aligned_cols=74 Identities=26% Similarity=0.262 Sum_probs=45.4
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEE--ecC--CccccccCCCCEEEEcCCC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY--MGN--DQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~--~~t--~d~~~a~~~aDiVIi~ag~ 106 (300)
|.|+|| |.+|+.++..|++.....++++.|++..+.... ........+... ..+ .++.+.++++|+||.++|.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERL--AEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH--HT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH--HhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789997 999999999999887655899999976433221 111011122221 111 1255678999999999875
Q ss_pred C
Q 022263 107 P 107 (300)
Q Consensus 107 ~ 107 (300)
.
T Consensus 78 ~ 78 (386)
T PF03435_consen 78 F 78 (386)
T ss_dssp G
T ss_pred c
Confidence 3
No 412
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=95.49 E-value=0.16 Score=44.53 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+|.|+||+|.+|++++..|...|. .+++.|.+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~ 36 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG 36 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence 3789999999999999999998886 899998764
No 413
>PRK07578 short chain dehydrogenase; Provisional
Probab=95.49 E-value=0.055 Score=46.33 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=42.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
|++.|+||+|.+|..++..|.+. . ++++.+.+.. ....|+.+.. .+. ...+.+...|++|..+|..
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~---~~~------~~~~~~~~id~lv~~ag~~ 66 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPA---SIR------ALFEKVGKVDAVVSAAGKV 66 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChH---HHH------HHHHhcCCCCEEEECCCCC
Confidence 58999999999999999999877 3 7898887532 1112333211 000 0011234689999999864
No 414
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.48 E-value=0.039 Score=51.23 Aligned_cols=57 Identities=18% Similarity=0.374 Sum_probs=45.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
....+|+|||.+|.||..++..|...+. ++.+++... .++.+.++.||+||.+.|
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg 211 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVG 211 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecC
Confidence 3456999999756999999999999887 888886421 144577899999999988
Q ss_pred CC
Q 022263 106 VP 107 (300)
Q Consensus 106 ~~ 107 (300)
.+
T Consensus 212 ~~ 213 (301)
T PRK14194 212 RP 213 (301)
T ss_pred Ch
Confidence 65
No 415
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.47 E-value=0.11 Score=45.58 Aligned_cols=69 Identities=17% Similarity=0.124 Sum_probs=47.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
.||.|||| |.+|..-+..|...|- +|++++.+.. ....++.+.. .++...+..+ .+.++++|+||.+-+
T Consensus 10 k~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~~---~i~~~~~~~~-~~dl~~~~lVi~at~ 78 (205)
T TIGR01470 10 RAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQG---GITWLARCFD-ADILEGAFLVIAATD 78 (205)
T ss_pred CeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHcC---CEEEEeCCCC-HHHhCCcEEEEECCC
Confidence 49999997 9999999988988875 8999987543 1222333221 3444333333 356899999998744
No 416
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.44 E-value=0.027 Score=52.41 Aligned_cols=94 Identities=17% Similarity=0.102 Sum_probs=59.7
Q ss_pred hhhhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcE
Q 022263 4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEV 81 (300)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v 81 (300)
..+-.++|-|--+-.-+++. + ....++|||+ |..|...+..+..-.-+++|.+||+++. ...+.++.+.. ...+
T Consensus 95 ~~lT~~RTaA~salaa~~l~-~-da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v 170 (301)
T PRK06407 95 NRLGQIRTGAVTAYATSILH-K-NVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDI 170 (301)
T ss_pred chHHHHHHHHHHHHHHHHhh-c-CCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcE
Confidence 34445555444444444554 2 4679999995 9999877766665444689999999764 33344444321 2234
Q ss_pred EEEecCCccccccCCCCEEEEcC
Q 022263 82 AGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 82 ~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
... ++.++++++||+|+.+-
T Consensus 171 ~~~---~~~~eav~~aDIV~taT 190 (301)
T PRK06407 171 RPV---DNAEAALRDADTITSIT 190 (301)
T ss_pred EEe---CCHHHHHhcCCEEEEec
Confidence 432 46789999999998653
No 417
>PRK12744 short chain dehydrogenase; Provisional
Probab=95.44 E-value=0.56 Score=41.67 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~ 62 (300)
.+++.|+||+|.+|.+++..|+..|. ++++++.
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~ 40 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHY 40 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEec
Confidence 35899999999999999999998886 6666654
No 418
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.44 E-value=0.032 Score=52.18 Aligned_cols=91 Identities=20% Similarity=0.300 Sum_probs=54.6
Q ss_pred hhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCCcc--cHHHHhccccCCCcEE
Q 022263 6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTP--GVAADVGHINTRSEVA 82 (300)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~ 82 (300)
+-.++|-|-.+..-+++... ...+|+|||+ |.+|...+..+.. .+ ..+|.++|+.+.+ ..+.++.+. ...+.
T Consensus 104 lT~~RTaa~sala~~~La~~-~~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~ 178 (314)
T PRK06141 104 LTARRTAAASALAASYLARK-DASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQ--GFDAE 178 (314)
T ss_pred hhcchhHHHHHHHHHHhCCC-CCceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCceE
Confidence 33444444444443444433 4568999995 9999998875554 44 4689999986543 233334321 11233
Q ss_pred EEecCCccccccCCCCEEEEcC
Q 022263 83 GYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 83 ~~~~t~d~~~a~~~aDiVIi~a 104 (300)
.. .+.++++++||+|+.+.
T Consensus 179 ~~---~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 179 VV---TDLEAAVRQADIISCAT 197 (314)
T ss_pred Ee---CCHHHHHhcCCEEEEee
Confidence 32 45667899999986553
No 419
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=95.44 E-value=0.057 Score=48.35 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|..++..|+..+. ++++.|++.
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~ 43 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG 43 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 35799999999999999999999887 899998854
No 420
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.43 E-value=0.034 Score=52.20 Aligned_cols=73 Identities=14% Similarity=0.268 Sum_probs=47.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
..+++|||+ |.+|...+..+....-+++|.++|+++.+.. +.++.+. ....+..+ ++++++++++|+|+.+-.
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~~---~~~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYVV---NSADEAIEEADIIVTVTN 201 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEEe---CCHHHHHhcCCEEEEccC
Confidence 458999995 9999877766554333579999999764332 2333321 12223332 466788999999998743
No 421
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.42 E-value=0.17 Score=50.41 Aligned_cols=109 Identities=19% Similarity=0.290 Sum_probs=62.7
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhcccc--CCC-c----EEEEe--cCCcc--
Q 022263 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHIN--TRS-E----VAGYM--GNDQL-- 90 (300)
Q Consensus 23 ~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~--~~~-~----v~~~~--~t~d~-- 90 (300)
.+..++.||.|+|+ |.+|...+..+...|- +|+.+|.++.+ .++..+-... ... . -..|. .+.++
T Consensus 160 aG~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 160 AGKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred cCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHH
Confidence 34566789999996 9999988887877775 79999996532 2232221110 000 0 00000 01111
Q ss_pred ------ccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHH-HHHHHHHHHhhCCCeEEEEecCC
Q 022263 91 ------GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI-VKDLCSAIAKYCPNAIVNMISNP 147 (300)
Q Consensus 91 ------~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i-~~~i~~~i~~~~p~a~viv~tNP 147 (300)
.+.++++|+||.+++.|.++.. .. .++..+.+ .|.+.++.++-+
T Consensus 237 ~~~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v~~m---kpGgvIVdvg~~ 287 (509)
T PRK09424 237 AEMALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMVASM---KPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHHHhc---CCCCEEEEEccC
Confidence 1224689999999998743221 12 24444433 478888878764
No 422
>PRK07775 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.18 Score=45.58 Aligned_cols=36 Identities=28% Similarity=0.300 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+++.+.|+||+|.+|.+++..|+.+|. +|++.+.+.
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~ 44 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGF--PVALGARRV 44 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 345799999999999999999999887 888888743
No 423
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.39 E-value=0.022 Score=53.94 Aligned_cols=70 Identities=21% Similarity=0.387 Sum_probs=45.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
||+|+||+|.+|..++..|...++ ..+++++...+..|+...+.. ..+.... .+ .++++++|+||++.|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~----~~~~~~~--~~-~~~~~~~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG----KELEVNE--AK-IESFEGIDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC----eeEEEEe--CC-hHHhcCCCEEEECCCH
Confidence 699999999999999998888543 236777765544444333221 1122111 12 2457899999998774
No 424
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.39 E-value=0.11 Score=50.92 Aligned_cols=129 Identities=19% Similarity=0.308 Sum_probs=74.6
Q ss_pred eEEEEcCCCChHHH-HHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263 30 KVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (300)
Q Consensus 30 KI~IIGaaG~VG~~-~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~ 108 (300)
+|.++|. |-.|.+ +|..|...|. ++...|..... ...+|+.. .+..+.+ .+ .+.++++|+||.+.|.+.
T Consensus 1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~----gi~~~~g-~~-~~~~~~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEAL----GIPIYIG-HS-AENLDDADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHC----cCEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence 4789996 999987 8999999998 89999975533 22234332 2333333 33 255788999999988874
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe--cCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022263 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAGTYNEKKLF 171 (300)
Q Consensus 109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~~~i~~~~~~~~~~~~~~kvi 171 (300)
.. .......+.+++++.+.-- +.+...+..+|-+ ||==.+.+.+++++++..| +++.-++
T Consensus 71 ~~-p~~~~a~~~~i~v~~~~el-~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g-~~~~~~~ 132 (448)
T TIGR01082 71 DN-PEIVEAKERGIPVIRRAEM-LAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG-LDPTVVV 132 (448)
T ss_pred CC-HHHHHHHHcCCceEeHHHH-HHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC-CCCeEEE
Confidence 21 1122223445555533221 2222111123333 5554556677888888776 5444443
No 425
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.39 E-value=0.19 Score=45.85 Aligned_cols=87 Identities=22% Similarity=0.259 Sum_probs=50.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEE-EEEecCCcccHHH-HhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYDIANTPGVAA-DVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el-~L~D~~~~~g~~~-dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
||||+|||+ |.+|..++..+...+.. ++ .+++.+....... .+.. .+.. ++|+++.-.+.|+|+.+++
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~-~l~~v~~~~~~~~~~~~~~~~-----~~~~---~~d~~~l~~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDL-RVDWVIVPEHSIDAVRRALGE-----AVRV---VSSVDALPQRPDLVVECAG 70 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCc-eEEEEEEcCCCHHHHhhhhcc-----CCee---eCCHHHhccCCCEEEECCC
Confidence 689999996 99999999888776433 33 3334332211111 1111 1222 2355443356999999975
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeE
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~ 140 (300)
. ....+++..+-+.+.+.+
T Consensus 71 ~----------------~~~~e~~~~aL~aGk~Vv 89 (265)
T PRK13303 71 H----------------AALKEHVVPILKAGIDCA 89 (265)
T ss_pred H----------------HHHHHHHHHHHHcCCCEE
Confidence 2 234567777666655533
No 426
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.38 E-value=0.2 Score=42.04 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=43.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
..+|.|||| |.+|...+..|...+. +|++++.+..+ +..++. .+.......+ ++.++++|+||.+.
T Consensus 13 ~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~-~l~~l~------~i~~~~~~~~-~~dl~~a~lViaaT 78 (157)
T PRK06719 13 NKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICK-EMKELP------YITWKQKTFS-NDDIKDAHLIYAAT 78 (157)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCH-HHHhcc------CcEEEecccC-hhcCCCceEEEECC
Confidence 459999997 9999999999998887 89999743221 222221 1111111122 35689999998874
No 427
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.37 E-value=0.13 Score=50.00 Aligned_cols=102 Identities=16% Similarity=0.277 Sum_probs=61.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---c-ccccCCCCEE
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---L-GQALEDSDVV 100 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~-~~a~~~aDiV 100 (300)
..+++|.|+|+ |.+|..++..|...+. +++++|.++..- .++.+... .+..+.+. ++ + +..++++|.|
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~--~v~vid~~~~~~--~~~~~~~~--~~~~i~gd~~~~~~L~~~~~~~a~~v 301 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGY--SVKLIERDPERA--EELAEELP--NTLVLHGDGTDQELLEEEGIDEADAF 301 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHHHCC--CCeEEECCCCCHHHHHhcCCccCCEE
Confidence 45689999996 9999999999988887 899999865322 12222111 11111111 11 1 2456899999
Q ss_pred EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
|++.+.. ..|..+ +..+++++++-++..+.+|.+
T Consensus 302 i~~~~~~-----------~~n~~~----~~~~~~~~~~~ii~~~~~~~~ 335 (453)
T PRK09496 302 IALTNDD-----------EANILS----SLLAKRLGAKKVIALVNRPAY 335 (453)
T ss_pred EECCCCc-----------HHHHHH----HHHHHHhCCCeEEEEECCcch
Confidence 8874311 345443 223344556656666677765
No 428
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.36 E-value=0.054 Score=48.75 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=31.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+..||.|+|+ |-+|+.++..|+..|+ ++|.|+|.+.
T Consensus 23 ~~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 4458999996 9999999999999885 6899999864
No 429
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.36 E-value=0.057 Score=46.58 Aligned_cols=97 Identities=20% Similarity=0.342 Sum_probs=64.0
Q ss_pred CCCceEEEEcCCCChHHHHHH-HHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEecCCccccccC--CCCEEE
Q 022263 26 VPDRKVAVLGAAGGIGQPLAL-LMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVI 101 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~-~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVI 101 (300)
.++.+|.|||+ |++|.+++. .+....-.+-+..+|+++. -|. ...+ ..+... ++++.-++ +.|+.|
T Consensus 82 ~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~--~~~~----v~V~~~---d~le~~v~~~dv~iai 151 (211)
T COG2344 82 DKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGT--KIGD----VPVYDL---DDLEKFVKKNDVEIAI 151 (211)
T ss_pred CcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCc--ccCC----eeeech---HHHHHHHHhcCccEEE
Confidence 46779999996 999999985 4444444567889999763 221 1111 123322 35555555 889999
Q ss_pred EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 022263 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150 (300)
Q Consensus 102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~ 150 (300)
+|+. .+-.+++++.+.+.+=++++ ++| |+..
T Consensus 152 LtVP----------------a~~AQ~vad~Lv~aGVkGIl-NFt-Pv~l 182 (211)
T COG2344 152 LTVP----------------AEHAQEVADRLVKAGVKGIL-NFT-PVRL 182 (211)
T ss_pred EEcc----------------HHHHHHHHHHHHHcCCceEE-ecc-ceEe
Confidence 9852 24467888889888888864 666 8873
No 430
>PRK05599 hypothetical protein; Provisional
Probab=95.35 E-value=0.76 Score=40.81 Aligned_cols=154 Identities=12% Similarity=0.129 Sum_probs=79.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCc----------cccccC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ----------LGQALE 95 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~~ 95 (300)
|.+.|+||++.+|..++..|.+ +. .+++.+++.. +..+.++...... .+..+.. -.| ..+.+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~--~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE--DVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC--EEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 4588999999999999999884 64 8999987543 2222334322111 1111110 011 122245
Q ss_pred CCCEEEEcCCCCCCCC---Ccc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCC
Q 022263 96 DSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY 165 (300)
Q Consensus 96 ~aDiVIi~ag~~~~~g---~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~ 165 (300)
..|++|..+|...... .+. .+.+..| ..+.+.+.+.+.+...++.++++|.-... .+ .
T Consensus 77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-----------~~-~ 144 (246)
T PRK05599 77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGW-----------RA-R 144 (246)
T ss_pred CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccc-----------cC-C
Confidence 7899999998743211 111 1122223 23344555666654445777777654431 01 2
Q ss_pred CCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEE
Q 022263 166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV 200 (300)
Q Consensus 166 ~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v 200 (300)
|..-.++.+.---..+...++.+++ +..|++..
T Consensus 145 ~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v~~ 177 (246)
T PRK05599 145 RANYVYGSTKAGLDAFCQGLADSLH--GSHVRLII 177 (246)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHhc--CCCceEEE
Confidence 2222334432222345566777764 34455443
No 431
>PRK07035 short chain dehydrogenase; Provisional
Probab=95.35 E-value=0.13 Score=45.51 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+|.|+||+|.+|.+++..|...|. .|+++|.+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~ 42 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL 42 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999886 899999854
No 432
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.35 E-value=0.018 Score=53.83 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=51.0
Q ss_pred hhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEE
Q 022263 8 SVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY 84 (300)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~ 84 (300)
.++|-|--+..-+|+..+ ...+++|+|+ |..+..-+..+.. .+ +++|.+||+++. +..+.++.+ . ...+...
T Consensus 109 ~~RTaA~sala~~~La~~-~~~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~ 183 (313)
T PF02423_consen 109 ALRTAAVSALAARYLARP-DARTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV 183 (313)
T ss_dssp HHHHHHHHHHHHHHHS-T-T--EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE
T ss_pred hhHHHHHHHHHHHHhCcC-CCceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccceec
Confidence 344444333344444433 3458999995 9999776665554 45 789999999763 344555665 2 2244432
Q ss_pred ecCCccccccCCCCEEEEcC
Q 022263 85 MGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 85 ~~t~d~~~a~~~aDiVIi~a 104 (300)
.+.++++++||+|+.+-
T Consensus 184 ---~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 184 ---DSAEEAVRGADIIVTAT 200 (313)
T ss_dssp ---SSHHHHHTTSSEEEE--
T ss_pred ---cchhhhcccCCEEEEcc
Confidence 46789999999988653
No 433
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.34 E-value=0.11 Score=50.39 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=58.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
...+|+|+|+ |.+|..++..+...|. +++.+|+++.+. .+..+ . ... .+.+++++++|+||.+.|
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~---G----~~~----~~~~e~v~~aDVVI~atG 266 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME---G----YEV----MTMEEAVKEGDIFVTTTG 266 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc---C----CEE----ccHHHHHcCCCEEEECCC
Confidence 3469999996 9999999999888886 788899875432 22211 1 111 123467899999998865
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP 147 (300)
.+ .++.. ..+....+.+++++++.+
T Consensus 267 ~~---------------~~i~~--~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 NK---------------DIITG--EHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence 32 22221 113344578899998865
No 434
>PRK08339 short chain dehydrogenase; Provisional
Probab=95.33 E-value=0.43 Score=42.88 Aligned_cols=114 Identities=11% Similarity=0.176 Sum_probs=64.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc------cCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA------LED 96 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a------~~~ 96 (300)
..+.|+||+|.+|..++..|+..|. +|++.|++... ....++.... ...+..+.. -+| .++. +..
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 4689999999999999999999887 89999986422 1222232211 112222111 011 1122 235
Q ss_pred CCEEEEcCCCCCCC---CCcch---hhhhhh----HHHHHHHHHHHHhhCCCeEEEEecC
Q 022263 97 SDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 97 aDiVIi~ag~~~~~---g~~r~---dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tN 146 (300)
.|++|..+|..... ..+.. ..+..| ..+.+.+.+.+++.. .+.+|++|.
T Consensus 86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS 144 (263)
T PRK08339 86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTS 144 (263)
T ss_pred CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 89999999875321 11211 223334 445677777776543 456666654
No 435
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.32 E-value=0.13 Score=50.23 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=59.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
...+|+|+|+ |.+|..++..+...|. +|+.+|+++.+..... .+ . ... .+++++++++|+||.+.|.
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~-~~-G----~~v----~~l~eal~~aDVVI~aTG~ 277 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAA-MD-G----FRV----MTMEEAAELGDIFVTATGN 277 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHH-hc-C----CEe----cCHHHHHhCCCEEEECCCC
Confidence 4458999996 9999999999988886 8999998764322110 11 1 111 1345778999999887542
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~ 148 (300)
..++.. +.+....+.+++++++-+-
T Consensus 278 ---------------~~vI~~--~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 278 ---------------KDVITA--EHMEAMKDGAILANIGHFD 302 (425)
T ss_pred ---------------HHHHHH--HHHhcCCCCCEEEEcCCCC
Confidence 222221 2233344688999887543
No 436
>PRK08628 short chain dehydrogenase; Provisional
Probab=95.31 E-value=0.25 Score=43.91 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=30.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
..+|.|+||+|.+|..++..|++.|. ++++.+.++
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~ 41 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSA 41 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCCh
Confidence 34899999999999999999999887 788888755
No 437
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.30 E-value=0.11 Score=47.48 Aligned_cols=73 Identities=29% Similarity=0.334 Sum_probs=42.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-c-ccH-HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T-PGV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~-~g~-~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
||||+|+|++|.+|..++..+...+-+.=+.++|... . .+. ..++.... ...+.. ++|+++...++|+||.+.
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~---~~d~~~l~~~~DvVIdfT 76 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPV---TDDLEAVETDPDVLIDFT 76 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCcee---eCCHHHhcCCCCEEEECC
Confidence 4799999966999999998888654343455677422 1 121 11121111 112332 245655445689998874
No 438
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=95.30 E-value=0.57 Score=42.00 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~ 62 (300)
.+.|+||+|.+|.+++..|.+.|. +|++.+.
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~ 33 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYH 33 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcC
Confidence 588999999999999999999887 7888754
No 439
>PLN02858 fructose-bisphosphate aldolase
Probab=95.30 E-value=0.062 Score=59.64 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=49.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
+.+++|++|| .|.||..++..|...|+ ++..||+++.+.. ++.+.. ... ..+..+++++||+||++..
T Consensus 322 ~~~~~IGfIG-lG~MG~~mA~~L~~~G~--~V~v~dr~~~~~~--~l~~~G----a~~---~~s~~e~~~~aDvVi~~V~ 389 (1378)
T PLN02858 322 KPVKRIGFIG-LGAMGFGMASHLLKSNF--SVCGYDVYKPTLV--RFENAG----GLA---GNSPAEVAKDVDVLVIMVA 389 (1378)
T ss_pred cCCCeEEEEC-chHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHcC----Cee---cCCHHHHHhcCCEEEEecC
Confidence 3467999999 59999999999999988 8999998653322 233221 111 1345678899999999865
No 440
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=95.29 E-value=0.9 Score=40.54 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=28.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~ 62 (300)
.++|.|+||++.+|.+++..|+..|. .|++.+.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~ 40 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN 40 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence 45899999999999999999999887 7887754
No 441
>PRK12747 short chain dehydrogenase; Provisional
Probab=95.29 E-value=0.49 Score=41.86 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~ 62 (300)
.+++.|+||+|.+|.+++..|+..|. ++++.+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~ 36 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG 36 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence 35899999999999999999999887 7888754
No 442
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.25 E-value=0.32 Score=42.80 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEE
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~ 60 (300)
+++.|+||+|.+|..++..|+..|. ++++.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~ 34 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY--DIAVN 34 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEE
Confidence 5899999999999999999999886 66654
No 443
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.24 E-value=0.12 Score=50.34 Aligned_cols=129 Identities=18% Similarity=0.298 Sum_probs=73.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
.++|.|+|+ |..|.+.+..|...|. ++.++|..+.......|+... ..+..+.+..+ +..+.++|+||.+.|.+
T Consensus 5 ~~~~~v~G~-g~~G~~~a~~l~~~g~--~v~~~d~~~~~~~~~~l~~~~--~gi~~~~g~~~-~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 5 NKKILVAGL-GGTGISMIAYLRKNGA--EVAAYDAELKPERVAQIGKMF--DGLVFYTGRLK-DALDNGFDILALSPGIS 78 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCchhHHHHhhcc--CCcEEEeCCCC-HHHHhCCCEEEECCCCC
Confidence 358999996 9999999999999887 899999865321112233311 13443333322 23357899999999987
Q ss_pred CCCCCcchhhhhhhHHHHH--HHHHH-HHhhCCCeEEEEecCCCcccHHHHHHHHHHhC
Q 022263 108 RKPGMTRDDLFNINAGIVK--DLCSA-IAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG 163 (300)
Q Consensus 108 ~~~g~~r~dl~~~N~~i~~--~i~~~-i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~ 163 (300)
...- ......+.+++++. +++.. +++.....+-|--||==.+.+.+++.+++..+
T Consensus 79 ~~~p-~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 79 ERQP-DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred CCCH-HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 3211 11122234556552 23322 22222222332235554556677888887765
No 444
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.24 E-value=0.049 Score=46.36 Aligned_cols=56 Identities=27% Similarity=0.523 Sum_probs=43.0
Q ss_pred CCCceEEEEcCCCC-hHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 26 VPDRKVAVLGAAGG-IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 26 ~~~~KI~IIGaaG~-VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
....||.|||+ |. +|..++..|...+. ++.+.+... .++.+.+++||+||.+.
T Consensus 42 l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat 95 (168)
T cd01080 42 LAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcC
Confidence 34569999996 87 58889999988776 688887531 24456789999999998
Q ss_pred CCC
Q 022263 105 GVP 107 (300)
Q Consensus 105 g~~ 107 (300)
+.+
T Consensus 96 ~~~ 98 (168)
T cd01080 96 GKP 98 (168)
T ss_pred CCC
Confidence 765
No 445
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=95.22 E-value=0.1 Score=49.25 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~ 63 (300)
++||+|.|+ |.||..+...|.+++.-+++.++-++
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvain 35 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAIN 35 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEec
Confidence 479999997 99999998887776433567777443
No 446
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.22 E-value=0.048 Score=51.36 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=48.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
..++|+|+|+ |..|...+..+....-+.+|.++++++.+.+ +.++++. ....+.. .+|+++++++||+||.+.
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~-~g~~v~~---~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAE-LGIPVTV---ARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhc-cCceEEE---eCCHHHHHccCCEEEEee
Confidence 4468999995 9999887777764322569999998754332 3333321 1112322 246778899999998874
Q ss_pred C
Q 022263 105 G 105 (300)
Q Consensus 105 g 105 (300)
.
T Consensus 206 ~ 206 (330)
T PRK08291 206 P 206 (330)
T ss_pred C
Confidence 3
No 447
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.22 E-value=0.11 Score=50.79 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=74.2
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--H-HHhccccCCCcEEEEecCCccc-----cccCCCCEEE
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--A-ADVGHINTRSEVAGYMGNDQLG-----QALEDSDVVI 101 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~-~dl~~~~~~~~v~~~~~t~d~~-----~a~~~aDiVI 101 (300)
||.|+|+ |..|.+.|..|...|. ++.++|.+..... . ..|... .++.+.+. +.. ..+.+.|.||
T Consensus 2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~----gi~~~~g~-~~~~~~~~~~~~~~d~vv 73 (459)
T PRK02705 2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQE----GITVKLGK-PLELESFQPWLDQPDLVV 73 (459)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHc----CCEEEECC-ccchhhhhHHhhcCCEEE
Confidence 7999995 9999999999999997 8999998643211 1 113332 23332222 111 2477899999
Q ss_pred EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhC
Q 022263 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAG 163 (300)
Q Consensus 102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~ 163 (300)
.+.|.+... .......+.+++++.++.-..+...+ ..+-|--||==.+.+.+++++++..+
T Consensus 74 ~s~gi~~~~-~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g 135 (459)
T PRK02705 74 VSPGIPWDH-PTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAG 135 (459)
T ss_pred ECCCCCCCC-HHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 998886321 11122224566776666543333222 23333335655566677888887766
No 448
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.22 E-value=0.2 Score=45.43 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=56.5
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---cccc------cCCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQA------LEDS 97 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a------~~~a 97 (300)
.+.|+| +|.+|.+++..|. .|. +|++.|++.... ...++.+.. ..+..+.. -+| .+++ +...
T Consensus 4 ~~lItG-a~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIG-AGGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEEC-CChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 345666 5899999999986 565 899999864321 112232211 11221110 111 1111 2468
Q ss_pred CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN 146 (300)
Q Consensus 98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN 146 (300)
|++|.+||.... ..+-.+.+..|..-...+.+.+.+. .+++.+++++.
T Consensus 78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS 126 (275)
T PRK06940 78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIAS 126 (275)
T ss_pred CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 999999997522 2233345566655444444444332 12333444443
No 449
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.20 E-value=0.39 Score=44.37 Aligned_cols=113 Identities=20% Similarity=0.367 Sum_probs=71.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec--C---------Cccccc
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG--N---------DQLGQA 93 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~--t---------~d~~~a 93 (300)
..-.|.|+||++-+|..+|+.+++.+- .++|+|+++. ...+..+.+.. .+..+.. + ...++.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 334799999877899999999999886 8999999763 22233344321 1111110 0 123566
Q ss_pred cCCCCEEEEcCCCC-CCCCC--cchh---hhhhh----HHHHHHHHHHHHhhCCCeEEEEec
Q 022263 94 LEDSDVVIIPAGVP-RKPGM--TRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 94 ~~~aDiVIi~ag~~-~~~g~--~r~d---l~~~N----~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
..+.|++|..||.- .++.. ++.+ .++-| ..+++...+.|.+.+ ++.++.++
T Consensus 112 ~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~Ia 172 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIA 172 (300)
T ss_pred cCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEeh
Confidence 78999999999963 33332 2222 12223 467788999988764 66666554
No 450
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.18 E-value=0.048 Score=51.08 Aligned_cols=93 Identities=9% Similarity=0.049 Sum_probs=58.3
Q ss_pred hhhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEE
Q 022263 5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVA 82 (300)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~ 82 (300)
.|-.++|-|-.+-.-+++..+ ....++|+|+ |..+..-+..+..-.-+++|.+||+++.+.+ +..+.+. ...+.
T Consensus 106 ~lT~~RTaA~sala~~~La~~-d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~ 181 (315)
T PRK06823 106 WLTALRTALAGRIVARLLAPQ-HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVN 181 (315)
T ss_pred hHHHHHHHHHHHHHHHHhcCC-CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEE
Confidence 344445554444444455443 4568999995 9999877766665444689999999764333 2223322 12343
Q ss_pred EEecCCccccccCCCCEEEEcC
Q 022263 83 GYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 83 ~~~~t~d~~~a~~~aDiVIi~a 104 (300)
. .++.++++++||+|+.+-
T Consensus 182 ~---~~~~~~av~~ADIV~taT 200 (315)
T PRK06823 182 T---TLDAAEVAHAANLIVTTT 200 (315)
T ss_pred E---ECCHHHHhcCCCEEEEec
Confidence 3 246678999999998764
No 451
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.2 Score=47.08 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
..+|.|+||+|.+|..++..|+..|. +|++.+.++
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~ 41 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDE 41 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 35899999999999999999999987 899999864
No 452
>PRK05872 short chain dehydrogenase; Provisional
Probab=95.15 E-value=0.32 Score=44.62 Aligned_cols=35 Identities=40% Similarity=0.531 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
..+|.|+||+|.+|..++..|+..|. +|++.+++.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 43 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEE 43 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999887 899999864
No 453
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.12 E-value=0.088 Score=49.28 Aligned_cols=90 Identities=14% Similarity=0.279 Sum_probs=57.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
....++|+|||. |.+|+.+|..+..-|. +|..+|.... . +.. .. + .++++.++.||+|++..
T Consensus 144 ~l~gktvgIiG~-G~IG~~va~~l~~fg~--~V~~~~~~~~--~--~~~-------~~-~---~~l~ell~~sDiv~l~~ 205 (314)
T PRK06932 144 DVRGSTLGVFGK-GCLGTEVGRLAQALGM--KVLYAEHKGA--S--VCR-------EG-Y---TPFEEVLKQADIVTLHC 205 (314)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCcc--c--ccc-------cc-c---CCHHHHHHhCCEEEEcC
Confidence 445679999995 9999999988877676 8888875321 0 000 00 1 25678899999999985
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
... + .+..++. .+.+....|++++|+++
T Consensus 206 Plt--~---------~T~~li~--~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 206 PLT--E---------TTQNLIN--AETLALMKPTAFLINTG 233 (314)
T ss_pred CCC--h---------HHhcccC--HHHHHhCCCCeEEEECC
Confidence 321 1 1111111 12233345899999885
No 454
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.11 E-value=0.09 Score=44.39 Aligned_cols=57 Identities=25% Similarity=0.471 Sum_probs=40.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
...++|+|||.++.||..++.+|.+.+- .+.+.+.. |.++++.++.||+||.++|
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVG 88 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeec
Confidence 3556999999878899999999998765 56665431 2355677899999999998
Q ss_pred CC
Q 022263 106 VP 107 (300)
Q Consensus 106 ~~ 107 (300)
.|
T Consensus 89 ~~ 90 (160)
T PF02882_consen 89 KP 90 (160)
T ss_dssp ST
T ss_pred cc
Confidence 65
No 455
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.10 E-value=0.15 Score=49.71 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=65.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCC--ccc-------cccCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND--QLG-------QALEDS 97 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~--d~~-------~a~~~a 97 (300)
+..++.|+||+|.+|..++..|+..+. +++++|.........++.+......+.. ..++ +.+ +.+...
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~-Dv~~~~~~~~~~~~~~~~~g~i 285 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALAL-DITAPDAPARIAEHLAERHGGL 285 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEE-eCCCHHHHHHHHHHHHHhCCCC
Confidence 345899999999999999999999887 8999987432222222221110001111 1010 111 112368
Q ss_pred CEEEEcCCCCCCC---CCc---chhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecC
Q 022263 98 DVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (300)
Q Consensus 98 DiVIi~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 146 (300)
|+||+++|..... .++ ....+..|+.-...+.+.+... .+.+.++++|.
T Consensus 286 d~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS 343 (450)
T PRK08261 286 DIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS 343 (450)
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence 9999999965321 111 1223455666555566655542 24566776653
No 456
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.10 E-value=0.11 Score=50.40 Aligned_cols=73 Identities=26% Similarity=0.396 Sum_probs=50.3
Q ss_pred ccccc-CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc
Q 022263 16 AGARG-YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL 94 (300)
Q Consensus 16 ~~~~~-~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~ 94 (300)
.|.+. +.......++|+|||. |.+|+.+|..+...|. +|.-||..... +.. .+.. ..++++.+
T Consensus 138 ~w~~~~~~~~~L~gktvGIiG~-G~IG~~vA~~~~~fGm--~V~~~d~~~~~----~~~------~~~~---~~~l~ell 201 (409)
T PRK11790 138 GWNKSAAGSFEVRGKTLGIVGY-GHIGTQLSVLAESLGM--RVYFYDIEDKL----PLG------NARQ---VGSLEELL 201 (409)
T ss_pred cccccccCcccCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCccc----ccC------Ccee---cCCHHHHH
Confidence 35443 2233456679999995 9999999999887777 89999974211 000 1111 13678899
Q ss_pred CCCCEEEEcC
Q 022263 95 EDSDVVIIPA 104 (300)
Q Consensus 95 ~~aDiVIi~a 104 (300)
+.||+|++..
T Consensus 202 ~~sDiVslh~ 211 (409)
T PRK11790 202 AQSDVVSLHV 211 (409)
T ss_pred hhCCEEEEcC
Confidence 9999999984
No 457
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=95.10 E-value=0.086 Score=47.23 Aligned_cols=111 Identities=19% Similarity=0.138 Sum_probs=57.7
Q ss_pred EEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHH-HHh----cccc--------CCCcEEEEecCC----------c
Q 022263 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADV----GHIN--------TRSEVAGYMGND----------Q 89 (300)
Q Consensus 33 IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~-~dl----~~~~--------~~~~v~~~~~t~----------d 89 (300)
|+||+||+|+++...|+..+...+|+++-+.+....+ ..+ .+.. ...+++.+.|.- +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 6899999999999888876542278877664321111 111 1110 123566654321 1
Q ss_pred cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
+.+..+++|+||++|+.-. -..+..++...|+.-.+++++...+.... .++.+|
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iS 134 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRK-RFHYIS 134 (249)
T ss_dssp HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS----EEEEE
T ss_pred hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCc-ceEEec
Confidence 2233478999999987531 22244456788999999999988754434 455454
No 458
>PRK08223 hypothetical protein; Validated
Probab=95.10 E-value=0.034 Score=51.28 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=31.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+..||.|+|+ |-+|+.++..|+..|+ ++|.|+|-+.
T Consensus 26 ~~s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV 61 (287)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence 3458999996 9999999999999996 6899999863
No 459
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.09 E-value=0.17 Score=44.55 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~ 62 (300)
..+|.|+||+|++|++++..|++.+. ++++...
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~ 38 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK 38 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence 35899999999999999999998887 6666543
No 460
>PRK09134 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.25 Score=43.99 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=28.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~ 63 (300)
.+++.|+||+|.+|.+++..|...+. .+++.+..
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~ 42 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNR 42 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence 45899999999999999999998886 78777653
No 461
>PRK08017 oxidoreductase; Provisional
Probab=95.05 E-value=0.13 Score=45.52 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+|.|+||+|.+|.+++..|++.|. ++++++++.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGY--RVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 699999999999999999998887 888888754
No 462
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.03 E-value=0.32 Score=42.71 Aligned_cols=35 Identities=29% Similarity=0.558 Sum_probs=30.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
..++.|+||+|.+|..++..|...|. .++++|.++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~ 39 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ 39 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 34799999999999999999998886 799999865
No 463
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.02 E-value=0.05 Score=51.67 Aligned_cols=90 Identities=22% Similarity=0.321 Sum_probs=55.7
Q ss_pred hhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEe
Q 022263 8 SVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM 85 (300)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~ 85 (300)
..+|-|--+..-+++..+ ...+++|||+ |..+...+..+..-.-+.+|.+||+.+.+ ..+.++.+. ...+..
T Consensus 110 ~~RTaA~sala~~~Lar~-da~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~-- 183 (346)
T PRK07589 110 ALRTAATSALAAKYLARP-DSRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA-- 183 (346)
T ss_pred HHHHHHHHHHHHHHhccC-CCcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE--
Confidence 344444444444444443 4568999995 99997766555443345799999997643 334445431 123333
Q ss_pred cCCccccccCCCCEEEEcC
Q 022263 86 GNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 86 ~t~d~~~a~~~aDiVIi~a 104 (300)
.++.++++++||+|+.+-
T Consensus 184 -~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 184 -CRSVAEAVEGADIITTVT 201 (346)
T ss_pred -eCCHHHHHhcCCEEEEec
Confidence 246789999999998764
No 464
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.99 E-value=0.12 Score=48.30 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=58.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
....++|+|||- |.+|+.+|..+..-|. +|.-||..... . +. .+. + .++++.++.||+|++..
T Consensus 142 ~L~gktvGIiG~-G~IG~~vA~~~~~fgm--~V~~~d~~~~~-~-----~~----~~~-~---~~l~ell~~sDvv~lh~ 204 (311)
T PRK08410 142 EIKGKKWGIIGL-GTIGKRVAKIAQAFGA--KVVYYSTSGKN-K-----NE----EYE-R---VSLEELLKTSDIISIHA 204 (311)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHhhcCC--EEEEECCCccc-c-----cc----Cce-e---ecHHHHhhcCCEEEEeC
Confidence 345679999994 9999999988876666 89999974211 0 10 111 1 25678899999999985
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
-. .+. +|. ++ | ++ .+..-.|++++|+++
T Consensus 205 Pl--t~~-T~~-li--~----~~---~~~~Mk~~a~lIN~a 232 (311)
T PRK08410 205 PL--NEK-TKN-LI--A----YK---ELKLLKDGAILINVG 232 (311)
T ss_pred CC--Cch-hhc-cc--C----HH---HHHhCCCCeEEEECC
Confidence 32 111 111 11 2 22 233345899999985
No 465
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=94.99 E-value=0.13 Score=46.92 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=60.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCC-CEE-EEEecCCcccHHHHhccccCCCcEEEEecCCccccc-cCCCCEEEEcC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLV-SRL-ALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA-LEDSDVVIIPA 104 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~-~el-~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a-~~~aDiVIi~a 104 (300)
.+||+|||. |.+|..++..|...... -++ .++|.... ....+... ... .+|+++. ....|+||.+|
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~--~~~~~~~~-----~~~---~~~l~~ll~~~~DlVVE~A 70 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAAD--LPPALAGR-----VAL---LDGLPGLLAWRPDLVVEAA 70 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHH--HHHHhhcc-----Ccc---cCCHHHHhhcCCCEEEECC
Confidence 369999995 99999999888765331 133 34554332 22233222 111 1356553 47899999998
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d 149 (300)
+ ...++++++.+-+.+.|-+++-++==.|
T Consensus 71 ~----------------~~av~e~~~~iL~~g~dlvv~SvGALaD 99 (267)
T PRK13301 71 G----------------QQAIAEHAEGCLTAGLDMIICSAGALAD 99 (267)
T ss_pred C----------------HHHHHHHHHHHHhcCCCEEEEChhHhcC
Confidence 6 3668889988888777766654443344
No 466
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.97 E-value=0.16 Score=49.31 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=57.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
...+|+|+|+ |.+|..++..+...|. +++.+|.++.+.... ..+. ... .+.+++++++|+||.+.|
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~G-----~~v----~~leeal~~aDVVItaTG- 259 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMDG-----FRV----MTMEEAAKIGDIFITATG- 259 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-HhcC-----CEe----CCHHHHHhcCCEEEECCC-
Confidence 4559999996 9999999998888776 899999876432111 1111 111 123567899999988654
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP 147 (300)
|..++.. +.+....+.+++++++-+
T Consensus 260 --------------~~~vI~~--~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 260 --------------NKDVIRG--EHFENMKDGAIVANIGHF 284 (406)
T ss_pred --------------CHHHHHH--HHHhcCCCCcEEEEECCC
Confidence 2233332 123333467888888653
No 467
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.96 E-value=0.15 Score=44.62 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=44.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--C---CccccccCCCCEEEEc
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N---DQLGQALEDSDVVIIP 103 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t---~d~~~a~~~aDiVIi~ 103 (300)
+++.|+||+|.+|.+++..|++.+. ++++.|++..... . ..+..+.. + ....+.+...|++|..
T Consensus 6 k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~----~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ 74 (235)
T PRK06550 6 KTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPDL----S-----GNFHFLQLDLSDDLEPLFDWVPSVDILCNT 74 (235)
T ss_pred CEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCccccc----C-----CcEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence 5799999999999999999999887 8999988542110 0 01111110 0 0111235678999999
Q ss_pred CCCC
Q 022263 104 AGVP 107 (300)
Q Consensus 104 ag~~ 107 (300)
+|..
T Consensus 75 ag~~ 78 (235)
T PRK06550 75 AGIL 78 (235)
T ss_pred CCCC
Confidence 9864
No 468
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.96 E-value=0.12 Score=48.45 Aligned_cols=89 Identities=20% Similarity=0.314 Sum_probs=57.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
.....+|+|+|. |.+|+.+|..+..-|. +|..||..... + ... ..++++.++.||+|++..
T Consensus 145 ~l~gktvgIiG~-G~IG~~vA~~l~~fgm--~V~~~~~~~~~-------~-----~~~----~~~l~ell~~sDiv~l~l 205 (317)
T PRK06487 145 ELEGKTLGLLGH-GELGGAVARLAEAFGM--RVLIGQLPGRP-------A-----RPD----RLPLDELLPQVDALTLHC 205 (317)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCCc-------c-----ccc----ccCHHHHHHhCCEEEECC
Confidence 345579999995 9999999998887676 89889864210 0 011 125678899999999985
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (300)
Q Consensus 105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t 145 (300)
-. .+. +|. + -| ++. +....|++++|+++
T Consensus 206 Pl--t~~-T~~-l--i~----~~~---~~~mk~ga~lIN~a 233 (317)
T PRK06487 206 PL--TEH-TRH-L--IG----ARE---LALMKPGALLINTA 233 (317)
T ss_pred CC--ChH-Hhc-C--cC----HHH---HhcCCCCeEEEECC
Confidence 32 111 111 1 12 222 33345899999986
No 469
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=94.94 E-value=0.045 Score=51.53 Aligned_cols=95 Identities=21% Similarity=0.294 Sum_probs=65.0
Q ss_pred hhhhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcE
Q 022263 4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEV 81 (300)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v 81 (300)
..|-.++|-|-.+.+-+++... ....++|||+ |..+..-+..+...--+.+|.+||+++. +..+.++..... ..+
T Consensus 107 ~~lTa~RTaAasavAa~~LA~~-da~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~-~~v 183 (330)
T COG2423 107 TRLTALRTAAASAVAAKYLARK-DASTLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG-EAV 183 (330)
T ss_pred ccHHHHHHHHHHHHHHHHhccC-CCcEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC-ccc
Confidence 3455667777777777777765 4458999995 9999877776665444679999999764 334445554322 123
Q ss_pred EEEecCCccccccCCCCEEEEcC
Q 022263 82 AGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 82 ~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
.. .++.++++++||+|+-+-
T Consensus 184 ~a---~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 184 GA---ADSAEEAVEGADIVVTAT 203 (330)
T ss_pred ee---ccCHHHHhhcCCEEEEec
Confidence 32 346789999999988863
No 470
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.94 E-value=0.15 Score=44.38 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=30.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
..||+|+|+ |.+|+.++..|+..|+ ++|.++|-+.
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 458999996 8899999999999996 6899999753
No 471
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=94.93 E-value=0.29 Score=43.17 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~ 62 (300)
++|.|+||+|.+|+.++..|+..+. ++++.+.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~ 34 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW--SVGINYA 34 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence 4799999999999999999999886 7777654
No 472
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.92 E-value=0.046 Score=48.81 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=47.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
|+|.|+||+|++|+++...|...+. +++..-++......+. .........+.....+..+++|.|.++++.+..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~~---~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~ 74 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAALA---GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL 74 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhhc---CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence 6899999999999999999998876 7777665443323222 111001111112234567889999999987644
No 473
>PRK06114 short chain dehydrogenase; Provisional
Probab=94.91 E-value=0.18 Score=44.88 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=30.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+.+.|+||+|.+|.+++..|++.|. ++++.|.+.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~ 42 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT 42 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 4789999999999999999999887 899999754
No 474
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.87 E-value=0.33 Score=43.34 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+++.|+||+|.+|..++..|+..|. +|+++|.++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA 40 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999887 899999864
No 475
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.86 E-value=0.064 Score=50.73 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+||+|+||+|.+|..++..|..++.+.-+.+++...
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~ 36 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPR 36 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChh
Confidence 589999999999999999888876443334446643
No 476
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.86 E-value=0.083 Score=51.42 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=61.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
+..+|+|+|+ |.+|..++..|...|. .+|+++|.+..+.. ++...... . ... ..++.+++.++|+||.+.+.
T Consensus 179 ~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~--~la~~~g~-~--~i~-~~~l~~~l~~aDvVi~aT~s 250 (417)
T TIGR01035 179 KGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAE--DLAKELGG-E--AVK-FEDLEEYLAEADIVISSTGA 250 (417)
T ss_pred cCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHH--HHHHHcCC-e--Eee-HHHHHHHHhhCCEEEECCCC
Confidence 3469999996 9999999998888773 48999998653322 22211100 1 111 13556788999999998765
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN 149 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d 149 (300)
+.. + -+.+.+ +...... ...+++-+++|-|
T Consensus 251 ~~~-------i--i~~e~l----~~~~~~~~~~~~viDla~Prd 281 (417)
T TIGR01035 251 PHP-------I--VSKEDV----ERALRERTRPLFIIDIAVPRD 281 (417)
T ss_pred CCc-------e--EcHHHH----HHHHhcCCCCeEEEEeCCCCC
Confidence 421 0 111222 2222111 2457888899988
No 477
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.17 Score=50.26 Aligned_cols=130 Identities=19% Similarity=0.204 Sum_probs=72.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
..||.|+|. |..|.++|..|...|. ++..+|.+.......+|..... .++...+..+ .+.+.++|+||.+.|.+
T Consensus 7 ~~~i~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~L~~~~~--~~~~~~g~~~-~~~~~~~d~vv~sp~I~ 80 (498)
T PRK02006 7 GPMVLVLGL-GESGLAMARWCARHGA--RLRVADTREAPPNLAALRAELP--DAEFVGGPFD-PALLDGVDLVALSPGLS 80 (498)
T ss_pred CCEEEEEee-cHhHHHHHHHHHHCCC--EEEEEcCCCCchhHHHHHhhcC--CcEEEeCCCc-hhHhcCCCEEEECCCCC
Confidence 348999995 9999999999999897 8999998553212123433211 2233323223 35678999999998887
Q ss_pred CCCC---CcchhhhhhhHHHHHH---HHHHHHh-----hCCCeEEEEecCCCcccHHHHHHHHHHhC
Q 022263 108 RKPG---MTRDDLFNINAGIVKD---LCSAIAK-----YCPNAIVNMISNPVNSTVPIAAEVFKKAG 163 (300)
Q Consensus 108 ~~~g---~~r~dl~~~N~~i~~~---i~~~i~~-----~~p~a~viv~tNP~d~~~~i~~~~~~~~~ 163 (300)
.... ......-..|++++.+ +.+.+++ +.+..+-|--||==.+.+.+++.+++..+
T Consensus 81 ~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g 147 (498)
T PRK02006 81 PLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG 147 (498)
T ss_pred CcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 5310 0000111234443311 1222221 12233333336655566678888887765
No 478
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.84 E-value=0.2 Score=43.62 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=31.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+..||+|+|+ |.+|+.++..|+..|+ ++|.++|.+.
T Consensus 20 ~~s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 4459999996 9999999999999996 6899999863
No 479
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.84 E-value=0.26 Score=45.56 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~ 63 (300)
+.+++.|+||+|.+|..++..|+..|. .+++.|..
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~ 45 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVA 45 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence 446899999999999999999999887 89999874
No 480
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.83 E-value=0.32 Score=37.64 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=42.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
+..+|.|||+ |.+|..-+..|...+- ++.++..+. .. .++ .++... ..++++++++|+|+.+.
T Consensus 6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA--~v~vis~~~---~~--~~~-----~i~~~~--~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 6 KGKRVLVVGG-GPVAARKARLLLEAGA--KVTVISPEI---EF--SEG-----LIQLIR--REFEEDLDGADLVFAAT 68 (103)
T ss_dssp TT-EEEEEEE-SHHHHHHHHHHCCCTB--EEEEEESSE---HH--HHT-----SCEEEE--SS-GGGCTTESEEEE-S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCch---hh--hhh-----HHHHHh--hhHHHHHhhheEEEecC
Confidence 3459999996 9999999999998884 899998743 11 111 222221 24457799999999874
No 481
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.81 E-value=0.053 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPL 53 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~ 53 (300)
++||+|+||+|.+|..+...|.+++.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~ 27 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD 27 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 57999999999999999999988874
No 482
>PLN00203 glutamyl-tRNA reductase
Probab=94.80 E-value=0.11 Score=52.00 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=62.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~ 106 (300)
...+|+|||+ |.+|..++..|...|. .+|++++++..+.. .+........+.... .+++.+++.++|+||.+.+.
T Consensus 265 ~~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~--~La~~~~g~~i~~~~-~~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 265 ASARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVA--ALREEFPDVEIIYKP-LDEMLACAAEADVVFTSTSS 339 (519)
T ss_pred CCCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHH--HHHHHhCCCceEeec-HhhHHHHHhcCCEEEEccCC
Confidence 4569999996 9999999998888774 47999998654332 222111011122111 23556788999999887554
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhh----CCCeEEEEecCCCc
Q 022263 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISNPVN 149 (300)
Q Consensus 107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~----~p~a~viv~tNP~d 149 (300)
+. |- +.++..+.+.+. ...-++|=++.|=|
T Consensus 340 ~~-pv------------I~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 340 ET-PL------------FLKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred CC-Ce------------eCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 31 11 123333333221 12246777899987
No 483
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.79 E-value=0.44 Score=45.02 Aligned_cols=129 Identities=19% Similarity=0.271 Sum_probs=72.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccccCC-CCEEEEc
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALED-SDVVIIP 103 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~~~-aDiVIi~ 103 (300)
.+..+|+|+|+ |-+|....+.....+. +++.+|+++.+. .+.+| ....-+.. . ..|.-+++++ +|+||.+
T Consensus 165 ~pG~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~l---GAd~~i~~-~-~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPGKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKL---GADHVINS-S-DSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHh---CCcEEEEc-C-CchhhHHhHhhCcEEEEC
Confidence 34569999996 9888776666655664 999999976432 23333 11111221 1 1222233333 9999999
Q ss_pred CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC-cccHHHHHHHHHHhCCCCCCcEEEe---eehhHH
Q 022263 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-NSTVPIAAEVFKKAGTYNEKKLFGV---TTLDVV 179 (300)
Q Consensus 104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-d~~~~i~~~~~~~~~~~~~~kviG~---t~Lds~ 179 (300)
++ + ..+-+.++-..+++.++.+.+|- .....+- .+.. -+...+|.|+ +.-|..
T Consensus 237 v~-~------------------~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~--~~~l--i~~~~~i~GS~~g~~~d~~ 293 (339)
T COG1064 237 VG-P------------------ATLEPSLKALRRGGTLVLVGLPGGGPIPLLP--AFLL--ILKEISIVGSLVGTRADLE 293 (339)
T ss_pred CC-h------------------hhHHHHHHHHhcCCEEEEECCCCCcccCCCC--HHHh--hhcCeEEEEEecCCHHHHH
Confidence 76 3 12223344445789999999994 3322110 1111 1346788898 455554
Q ss_pred HHHHHH
Q 022263 180 RAKTFY 185 (300)
Q Consensus 180 R~~~~l 185 (300)
-+..+.
T Consensus 294 e~l~f~ 299 (339)
T COG1064 294 EALDFA 299 (339)
T ss_pred HHHHHH
Confidence 444444
No 484
>PRK06483 dihydromonapterin reductase; Provisional
Probab=94.78 E-value=0.23 Score=43.55 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=30.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
+++.|+||+|.+|.+++..|+..|. +|++.|.++
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 36 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH 36 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence 4789999999999999999999887 899998865
No 485
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=94.78 E-value=0.32 Score=42.48 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~ 62 (300)
.+.|+||+|.+|..++..|+..+. ++++...
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r 32 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCG 32 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence 578999999999999999998887 7887766
No 486
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.77 E-value=0.51 Score=41.18 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=30.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
.+|.|+||+|.+|+.++..|.+.|. +|++.+.++
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~ 39 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE 39 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4899999999999999999999887 899998864
No 487
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=94.76 E-value=0.072 Score=50.05 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=48.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
...+++|||+ |..|...+..|....-+.+|.+++++..+.+ +.++.+. ....+.. .+++++++++||+|+.+-
T Consensus 128 ~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~-~g~~v~~---~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 128 DSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSL-LGIDVTA---ATDPRAAMSGADIIVTTT 202 (326)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhh-cCceEEE---eCCHHHHhccCCEEEEec
Confidence 3458999995 9999888887764223568999999764333 3334321 1112322 246778899999999874
Q ss_pred C
Q 022263 105 G 105 (300)
Q Consensus 105 g 105 (300)
.
T Consensus 203 ~ 203 (326)
T TIGR02992 203 P 203 (326)
T ss_pred C
Confidence 3
No 488
>PLN02858 fructose-bisphosphate aldolase
Probab=94.75 E-value=0.089 Score=58.44 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=48.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
..||++|| .|.||..++..|+..|+ ++..||+++.+.. ++.+.. ... ..++.++.++||+||++..
T Consensus 4 ~~~IGfIG-LG~MG~~mA~~L~~~G~--~v~v~dr~~~~~~--~l~~~G----a~~---~~s~~e~a~~advVi~~l~ 69 (1378)
T PLN02858 4 AGVVGFVG-LDSLSFELASSLLRSGF--KVQAFEISTPLME--KFCELG----GHR---CDSPAEAAKDAAALVVVLS 69 (1378)
T ss_pred CCeEEEEc-hhHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHcC----Cee---cCCHHHHHhcCCEEEEEcC
Confidence 45899999 59999999999999998 8999998654332 333321 111 1345678899999999853
No 489
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.70 E-value=0.15 Score=49.49 Aligned_cols=125 Identities=18% Similarity=0.267 Sum_probs=72.6
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-H-HHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-A-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (300)
Q Consensus 30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~-~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~ 107 (300)
||.|+|. |..|.++|..|...|. +|...|....... . ..+.... ..++.+.+ .+ .+.++++|+||.+.|.|
T Consensus 1 ~~~~iG~-G~~G~a~a~~l~~~G~--~V~~sD~~~~~~~~~~~~~~~~~--~gi~~~~g-~~-~~~~~~~d~vv~sp~i~ 73 (433)
T TIGR01087 1 KILILGL-GKTGRAVARFLHKKGA--EVTVTDLKPNEELEPSMGQLRLN--EGSVLHTG-LH-LEDLNNADLVVKSPGIP 73 (433)
T ss_pred CEEEEEe-CHhHHHHHHHHHHCCC--EEEEEeCCCCccchhHHHHHhhc--cCcEEEec-Cc-hHHhccCCEEEECCCCC
Confidence 5899995 9999999999999998 8999998543211 1 1111100 12333333 23 35678999999999887
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhC
Q 022263 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAG 163 (300)
Q Consensus 108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~ 163 (300)
... .........+++++.+. +.+.+..+ ..+-|--||==.+.+.+++++++..+
T Consensus 74 ~~~-p~~~~a~~~~i~i~~~~-e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 74 PDH-PLVQAAAKRGIPVVGDI-ELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred CCC-HHHHHHHHCCCcEEEHH-HHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 421 12222234566665443 22223322 22322235544556667888887765
No 490
>PRK07201 short chain dehydrogenase; Provisional
Probab=94.70 E-value=0.29 Score=49.97 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=32.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (300)
Q Consensus 25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~ 64 (300)
....+++.|+||+|.+|.+++..|+..|. +|++++.+.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~ 405 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNG 405 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 34456899999999999999999999887 899999864
No 491
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=94.66 E-value=0.084 Score=44.58 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=41.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a 104 (300)
..+|+|||. |.-|.+.|..|...++ +|+.-..........--.+. .+ ..+..|+.+.||+|+++.
T Consensus 4 ~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~G-----f~----v~~~~eAv~~aDvV~~L~ 68 (165)
T PF07991_consen 4 GKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKADG-----FE----VMSVAEAVKKADVVMLLL 68 (165)
T ss_dssp TSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT------E----CCEHHHHHHC-SEEEE-S
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHCC-----Ce----eccHHHHHhhCCEEEEeC
Confidence 459999996 9999999999999998 77777664432221111221 11 124568999999999984
No 492
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.65 E-value=0.3 Score=48.08 Aligned_cols=127 Identities=19% Similarity=0.153 Sum_probs=71.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-cc-H-HHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PG-V-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-~g-~-~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ 103 (300)
+..+|.|+|+ |.+|..+|..|...|. ++.++|.... .. . ...|.+. .+..+.++ +. +...++|+||++
T Consensus 15 ~~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~-~~-~~~~~~D~Vv~s 85 (480)
T PRK01438 15 QGLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGP-GP-TLPEDTDLVVTS 85 (480)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECC-Cc-cccCCCCEEEEC
Confidence 3458999996 9999999999998887 8999997542 11 1 1123322 23333322 11 235679999999
Q ss_pred CCCCCCCCCcchhhhhhhHHHHHH--HHHHHHhhCCCeEEEEe--cCCCcccHHHHHHHHHHhC
Q 022263 104 AGVPRKPGMTRDDLFNINAGIVKD--LCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG 163 (300)
Q Consensus 104 ag~~~~~g~~r~dl~~~N~~i~~~--i~~~i~~~~p~a~viv~--tNP~d~~~~i~~~~~~~~~ 163 (300)
.|.+..... ....-..+++++.+ ++-.+.+...+..+|-+ ||==.+.+.+++.+++..+
T Consensus 86 ~Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g 148 (480)
T PRK01438 86 PGWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG 148 (480)
T ss_pred CCcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence 887532211 11112345555543 22222221123334445 4544555677788887655
No 493
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.65 E-value=0.12 Score=44.91 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=49.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc----ccHHHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI 101 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI 101 (300)
....+|+|||-+.-||..++.+|.+.+- .+.++|++.- ++. .+.|...+ .+.. +.++.+.++.|||||
T Consensus 60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~--~~~hs~t~--~~~~--~~~l~~~~~~ADIVI 131 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGE--SIRHEKHH--VTDE--EAMTLDCLSQSDVVI 131 (197)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCccccccccc--cccccccc--ccch--hhHHHHHhhhCCEEE
Confidence 3456999999988999999999998775 8999987431 111 12232110 0000 112557789999999
Q ss_pred EcCCCC
Q 022263 102 IPAGVP 107 (300)
Q Consensus 102 i~ag~~ 107 (300)
.++|.+
T Consensus 132 sAvG~~ 137 (197)
T cd01079 132 TGVPSP 137 (197)
T ss_pred EccCCC
Confidence 999866
No 494
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.58 E-value=0.077 Score=50.35 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~ 62 (300)
++||+|+||+|++|+.++..|...+.. ||+++..
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~-el~~~~~ 36 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWF-EVTALAA 36 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEc
Confidence 479999999999999999988876644 7888844
No 495
>PRK06125 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.91 Score=40.37 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=63.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc------ccccCCCC
Q 022263 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL------GQALEDSD 98 (300)
Q Consensus 28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~------~~a~~~aD 98 (300)
.+++.|+||+|.+|..++..|+..|. +|++.+++..+. ...++.... ...+..+.. -+|. .+.+...|
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 35899999999999999999999887 899999864321 122232211 112222110 1121 11246799
Q ss_pred EEEEcCCCCCC-CC--Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263 99 VVIIPAGVPRK-PG--MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 99 iVIi~ag~~~~-~g--~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN 146 (300)
++|.++|.... +- .+. ...+..|+. +.+.+.+.+.+.. .+.++++|.
T Consensus 84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss 140 (259)
T PRK06125 84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG 140 (259)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence 99999986421 11 111 223344544 4445555555432 345555543
No 496
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.53 E-value=0.21 Score=48.84 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=73.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (300)
Q Consensus 29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~ 108 (300)
--|+|+|. |..|.++|..|...|. ++...|.........+|.... ..+..+.+..+. +.+.++|+||.+.|.|.
T Consensus 7 ~~~~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~l~~~~--~g~~~~~~~~~~-~~~~~~d~vV~sp~i~~ 80 (448)
T PRK03803 7 GLHIVVGL-GKTGLSVVRFLARQGI--PFAVMDSREQPPGLDTLAREF--PDVELRCGGFDC-ELLVQASEIIISPGLAL 80 (448)
T ss_pred CeEEEEee-cHhHHHHHHHHHhCCC--eEEEEeCCCCchhHHHHHhhc--CCcEEEeCCCCh-HHhcCCCEEEECCCCCC
Confidence 36999996 9999999999999997 899999854321112243210 123333332332 55789999999988864
Q ss_pred CCCCcchhhhhhhHHHHHHH--HHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhC
Q 022263 109 KPGMTRDDLFNINAGIVKDL--CSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG 163 (300)
Q Consensus 109 ~~g~~r~dl~~~N~~i~~~i--~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~ 163 (300)
..- ........+++++.++ +..+. ....+-|--||==.+.+.+++.+++..+
T Consensus 81 ~~p-~~~~a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g 134 (448)
T PRK03803 81 DTP-ALRAAAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAG 134 (448)
T ss_pred CCH-HHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 211 1122224456665432 22222 1222333235654556678888887765
No 497
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.52 E-value=0.089 Score=49.38 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=47.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (300)
Q Consensus 24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ 103 (300)
+..+..+|+|||- |.+|..+|..|...|+ +|+.+|... .. .+..... ..+. .++.++++.||+|++.
T Consensus 12 ~~LkgKtVGIIG~-GsIG~amA~nL~d~G~--~ViV~~r~~-~s--~~~A~~~---G~~v----~sl~Eaak~ADVV~ll 78 (335)
T PRK13403 12 ELLQGKTVAVIGY-GSQGHAQAQNLRDSGV--EVVVGVRPG-KS--FEVAKAD---GFEV----MSVSEAVRTAQVVQML 78 (335)
T ss_pred hhhCcCEEEEEeE-cHHHHHHHHHHHHCcC--EEEEEECcc-hh--hHHHHHc---CCEE----CCHHHHHhcCCEEEEe
Confidence 3445569999995 9999999999999998 898887532 11 1111111 1121 1467899999999998
Q ss_pred C
Q 022263 104 A 104 (300)
Q Consensus 104 a 104 (300)
.
T Consensus 79 L 79 (335)
T PRK13403 79 L 79 (335)
T ss_pred C
Confidence 5
No 498
>PRK07877 hypothetical protein; Provisional
Probab=94.48 E-value=0.13 Score=53.39 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=50.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-----ccH---------------HHHhccccCCCcEEEEec
Q 022263 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGV---------------AADVGHINTRSEVAGYMG 86 (300)
Q Consensus 27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-----~g~---------------~~dl~~~~~~~~v~~~~~ 86 (300)
+..||+|+|+ | +|++++..|+..|++++|.|+|-+.. .-+ +..+...+....+..+..
T Consensus 106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 3458999996 9 99999999999998789999998531 001 111222222334444321
Q ss_pred ---CCccccccCCCCEEEEcC
Q 022263 87 ---NDQLGQALEDSDVVIIPA 104 (300)
Q Consensus 87 ---t~d~~~a~~~aDiVIi~a 104 (300)
.++.++.++++|+||-+.
T Consensus 184 ~i~~~n~~~~l~~~DlVvD~~ 204 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVEEC 204 (722)
T ss_pred cCCHHHHHHHhcCCCEEEECC
Confidence 134555678999999873
No 499
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.43 E-value=0.42 Score=37.20 Aligned_cols=92 Identities=21% Similarity=0.263 Sum_probs=55.3
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---c-ccccCCCCEEEEcCC
Q 022263 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---L-GQALEDSDVVIIPAG 105 (300)
Q Consensus 31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~-~~a~~~aDiVIi~ag 105 (300)
|.|+|. |.+|..++..|...+. +++++|.++.... .+.... +..+.|. ++ + +..+++||.||++.+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~--~vvvid~d~~~~~--~~~~~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGI--DVVVIDRDPERVE--ELREEG----VEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTS--EEEEEESSHHHHH--HHHHTT----SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred eEEEcC-CHHHHHHHHHHHhCCC--EEEEEECCcHHHH--HHHhcc----cccccccchhhhHHhhcCccccCEEEEccC
Confidence 579996 9999999999998664 8999999764322 222221 1111111 11 1 234688998888743
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (300)
Q Consensus 106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN 146 (300)
. | ..| ..++..+++..|+..++...+
T Consensus 72 ~---------d--~~n----~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 D---------D--EEN----LLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp S---------H--HHH----HHHHHHHHHHTTTSEEEEEES
T ss_pred C---------H--HHH----HHHHHHHHHHCCCCeEEEEEC
Confidence 1 1 334 445566677788766655543
No 500
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.42 E-value=0.11 Score=48.04 Aligned_cols=57 Identities=18% Similarity=0.378 Sum_probs=44.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (300)
Q Consensus 26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag 105 (300)
....+|+|||.+|.||..++..|.+.+. .+.++... |.++++.+++||+||.+.|
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg 210 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIG 210 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecC
Confidence 3456999999889999999999998886 77776210 1245577899999999988
Q ss_pred CC
Q 022263 106 VP 107 (300)
Q Consensus 106 ~~ 107 (300)
.+
T Consensus 211 ~~ 212 (284)
T PRK14179 211 RG 212 (284)
T ss_pred cc
Confidence 65
Done!