BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022265
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide
Repeat Proteins From Nostoc Punctiforme
Length = 201
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 72/134 (53%), Gaps = 15/134 (11%)
Query: 165 FSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACMIDCS 224
FS +L+ A +++ G+I H A L E Q ANL A + +
Sbjct: 37 FSIVDLRGAVLENINLSGAILHGAMLDEANL---------------QQANLSRADLSGAT 81
Query: 225 FCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTH 284
GADLR A+L ADL++A L+ A LEGA L A L ANLK ANL++A L H N+R+
Sbjct: 82 LNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREAD 141
Query: 285 LEGAKLDGANLLGA 298
L A L+ A+L GA
Sbjct: 142 LSEANLEAADLSGA 155
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 66/145 (45%), Gaps = 5/145 (3%)
Query: 155 FSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSAN 214
S A L ANLQ A D G+ + A LR + A
Sbjct: 52 LSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAI 111
Query: 215 LQDACMIDCSFCGADLRSA-----HLQTADLTNANLEGANLEGANLKGAKLRNANLKGAN 269
L +A + + A+L A +++ ADL+ ANLE A+L GA+L A L ANL A
Sbjct: 112 LDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAA 171
Query: 270 LQRAYLRHVNLRDTHLEGAKLDGAN 294
L+RA L NL D +LEG L+G N
Sbjct: 172 LERANLTGANLEDANLEGTILEGGN 196
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 42/75 (56%)
Query: 225 FCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTH 284
F DLR A L+ +L+ A L GA L+ ANL+ A L A+L GA L A LR NL
Sbjct: 37 FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKAD 96
Query: 285 LEGAKLDGANLLGAI 299
L A LD A L GAI
Sbjct: 97 LSDAILDNAILEGAI 111
>pdb|2O6W|A Chain A, Crystal Structure Of A Pentapeptide Repeat Protein (Rfr23)
From The Cyanobacterium Cyanothece 51142
Length = 150
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 49/80 (61%)
Query: 212 SANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQ 271
+ANL + + A L +L DL NA L GANL+GANL+ A L+ ANL+ ANL+
Sbjct: 65 NANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLR 124
Query: 272 RAYLRHVNLRDTHLEGAKLD 291
A L VNL +THL+G + D
Sbjct: 125 GAILTGVNLEETHLKGIETD 144
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 161 RNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACM 220
+ V +RANL +A D I NA L E +L++A +
Sbjct: 54 KPVDLTRANLSNANLYQSDLSSIILENAILVETNL---------------SETDLENAIL 98
Query: 221 IDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLR 261
I + GA+L +A+LQ A+L NANL GA L G NL+ L+
Sbjct: 99 IGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLK 139
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%)
Query: 211 QSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANL 270
+ +L A + + + +DL S L+ A L NL +LE A L GA L+ ANL+ ANL
Sbjct: 54 KPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANL 113
Query: 271 QRAYLRHVNLRDTHLEGAKLDGANLLG 297
Q A L + NLR L G L+ +L G
Sbjct: 114 QGANLENANLRGAILTGVNLEETHLKG 140
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 228 ADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEG 287
A+L +A+L +DL++ LE A L NL L NA L GANLQ A NL + +L+G
Sbjct: 61 ANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGA-----NLENANLQG 115
Query: 288 AKLDGANLLGAI 299
A L+ ANL GAI
Sbjct: 116 ANLENANLRGAI 127
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 236 QTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGANL 295
+ DLT ANL ANL ++L L NA L NL +T LE A L GANL
Sbjct: 54 KPVDLTRANLSNANLYQSDLSSIILENA----------ILVETNLSETDLENAILIGANL 103
Query: 296 LGA 298
GA
Sbjct: 104 QGA 106
>pdb|3DU1|X Chain X, The 2.0 Angstrom Resolution Crystal Structure Of Hetl, A
Pentapeptide Repeat Protein Involved In Heterocyst
Differentiation Regulation From The Cyanobacterium
Nostoc Sp. Strain Pcc 7120
Length = 257
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 68/178 (38%), Gaps = 33/178 (18%)
Query: 155 FSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSAN 214
FS+ CLR S A L + D +I A L + AN
Sbjct: 72 FSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGAN 131
Query: 215 LQDACMIDCSFCGADLRS---------------AHLQTADLTNANLEGANLEGA------ 253
L A + C ADLR A L ADL A+L ANL+GA
Sbjct: 132 LNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRAN 191
Query: 254 ------------NLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGANLLGAI 299
+L GA L+ A+L ANL+ A LR NL+ L GA L A L GAI
Sbjct: 192 FGRTIQWGNLAADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAI 249
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 165 FSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACMIDCS 224
F NLQ + + G+ A LR+ + A+L +A +
Sbjct: 37 FQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCL-----READLSEAILWGID 91
Query: 225 FCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDT 283
ADL A L+ ADLT A L LE ANL A L ANL ANL R L +LR +
Sbjct: 92 LSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPS 150
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 8 SSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSE--GYIFVDRDGKHFRH 65
S VRLN+GG F TT TL R+P+S L + + D + G +DRD +F
Sbjct: 5 SKWVRLNVGGTYFLTTRQTLC-RDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGP 63
Query: 66 ILNWLRDGAVPTLTESKFLELLREAEYYQLLGLIERIHAVINKR 109
+LN+LR G + + +L EAE+Y + LI+ + I +R
Sbjct: 64 VLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRER 107
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 8 SSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSE--GYIFVDRDGKHFRH 65
S VRLN+GG F TT TL R+P+S L + + D + G +DRD +F
Sbjct: 11 SKWVRLNVGGTYFLTTRQTLC-RDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGP 69
Query: 66 ILNWLRDGAVPTLTESKFLELLREAEYYQLLGLIERIHAVINKR 109
+LN+LR G + + +L EAE+Y + LI+ + I +R
Sbjct: 70 VLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRER 113
>pdb|2J8I|A Chain A, Structure Of Np275, A Pentapeptide Repeat Protein From
Nostoc Punctiforme
pdb|2J8I|B Chain B, Structure Of Np275, A Pentapeptide Repeat Protein From
Nostoc Punctiforme
Length = 118
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 42/75 (56%)
Query: 225 FCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTH 284
F DLR A L+ +L+ A L GA L+ ANL+ A L A+L GA L A LR NL
Sbjct: 37 FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKAD 96
Query: 285 LEGAKLDGANLLGAI 299
L A LD A L GAI
Sbjct: 97 LSDAILDNAILEGAI 111
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 165 FSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACMIDCS 224
FS +L+ A +++ G+I H A L E Q ANL A + +
Sbjct: 37 FSIVDLRGAVLENINLSGAILHGAMLDEANL---------------QQANLSRADLSGAT 81
Query: 225 FCGADLRSAHLQTADLTNANLEGANLEGANLKGAKL 260
GADLR A+L ADL++A L+ A LEGA L A L
Sbjct: 82 LNGADLRGANLSKADLSDAILDNAILEGAILDEAVL 117
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 214 NLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRA 273
+L+ A + + + GA L A L A+L ANL A+L GA L GA LR GANL +A
Sbjct: 41 DLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLR-----GANLSKA 95
Query: 274 YLRHVNLRDTHLEGAKLDGANL 295
L L + LEGA LD A L
Sbjct: 96 DLSDAILDNAILEGAILDEAVL 117
>pdb|2BM4|A Chain A, The Structure Of Mfpa (Rv3361c, C2 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM4|B Chain B, The Structure Of Mfpa (Rv3361c, C2 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM5|A Chain A, The Structure Of Mfpa (Rv3361c, P21 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM5|B Chain B, The Structure Of Mfpa (Rv3361c, P21 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM6|A Chain A, The Structure Of Mfpa (Rv3361c, C2221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|A Chain A, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|B Chain B, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|C Chain C, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix
Length = 186
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%)
Query: 220 MIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVN 279
M+ F LR L D T A L G +L G NL G +LR +L +L++ LR +
Sbjct: 72 MLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGAD 131
Query: 280 LRDTHLEGAKLDGANLLGA 298
L GA+LD A+L GA
Sbjct: 132 LSGARTTGARLDDADLRGA 150
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 49/132 (37%), Gaps = 15/132 (11%)
Query: 160 LRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDAC 219
RN F R L + F GS+F LR + NL
Sbjct: 52 FRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLT--- 108
Query: 220 MIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVN 279
G LR L DL L GA+L GA GA+L +A+L+GA + V
Sbjct: 109 -------GCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVD-----PVL 156
Query: 280 LRDTHLEGAKLD 291
R L GA++D
Sbjct: 157 WRTASLVGARVD 168
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 25/69 (36%)
Query: 220 MIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVN 279
+DC F G D R L A + G NL ++ R + + +R L H
Sbjct: 7 WVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHST 66
Query: 280 LRDTHLEGA 288
+ G+
Sbjct: 67 FAQCSMLGS 75
>pdb|2G0Y|A Chain A, Crystal Structure Of A Lumenal Pentapeptide Repeat Protein
From Cyanothece Sp 51142 At 2.3 Angstrom Resolution.
Tetragonal Crystal Form
Length = 184
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 211 QSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANL 270
SA+ +D +I F G L A ADLT++N A+L GA G+ L A+L GA+L
Sbjct: 50 SSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADL 109
Query: 271 QR--AYLRHVNLRDTHLEGAKLDGANLLGAI 299
AYL T +GA L A L AI
Sbjct: 110 TNGLAYL-------TSFKGADLTNAVLTEAI 133
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 213 ANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGA-----NLKGAKLRNANLKG 267
A +A + D +F ADLR A + L A+L GA+L + KGA L NA L
Sbjct: 72 AQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTE 131
Query: 268 ANLQRAYLRHVNLRDTHLEGAKLDGANLLGAI 299
A + R T + AK+ GA+ A+
Sbjct: 132 AIMMR----------TKFDDAKITGADFSLAV 153
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 155 FSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSAN 214
FS L F+ A+L + F + D G++F+ + L + A+
Sbjct: 64 FSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADL---------------HGAD 108
Query: 215 LQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKL 260
L + SF GADL +A L A + + A + GA+ A L
Sbjct: 109 LTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVL 154
>pdb|2F3L|A Chain A, Crystal Structure Of A Lumenal Rfr-Domain Protein
(Contig83.1_1_243_746) From Cyanothece Sp. 51142 At 2.1
Angstrom Resolution
Length = 184
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 211 QSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANL 270
SA+ +D +I F G L A ADLT++N A+L GA G+ L A+L GA+L
Sbjct: 50 SSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADL 109
Query: 271 QR--AYLRHVNLRDTHLEGAKLDGANLLGAI 299
AYL T +GA L A L AI
Sbjct: 110 TNGLAYL-------TSFKGADLTNAVLTEAI 133
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 213 ANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGA-----NLKGAKLRNANLKG 267
A +A + D +F ADLR A + L A+L GA+L + KGA L NA L
Sbjct: 72 AQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTE 131
Query: 268 ANLQRAYLRHVNLRDTHLEGAKLDGANL 295
A R T + AK+ GA+
Sbjct: 132 AIXXR----------TKFDDAKITGADF 149
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 155 FSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSAN 214
FS L F+ A+L + F + D G++F+ + L + A+
Sbjct: 64 FSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADL---------------HGAD 108
Query: 215 LQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKL 260
L + SF GADL +A L A + A + GA+ A L
Sbjct: 109 LTNGLAYLTSFKGADLTNAVLTEAIXXRTKFDDAKITGADFSLAVL 154
>pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of
At2g44920, A Pentapeptide Repeat Protein From
Arabidopsis Thaliana Thylakoid Lumen
Length = 152
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 229 DLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGA 288
D +++ L+ A+ A L GA+ A+L GA L A+L+GA+ A + VNL + +LEGA
Sbjct: 32 DFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGA 91
Query: 289 KL------DGANLLGA 298
+ G+N+ GA
Sbjct: 92 TMMGNTSFKGSNITGA 107
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 213 ANLQDACMIDCSFCGADLRSAHLQTADL----------TNANLEGANLEGANLKGAKLRN 262
AN + A ++ SF ADL A L ADL T NL ANLEGA + G N
Sbjct: 41 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMMG----N 96
Query: 263 ANLKGANLQRAYLRHVNLRD 282
+ KG+N+ A V LRD
Sbjct: 97 TSFKGSNITGADFTDVPLRD 116
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shal Voltage- Gated Potassium Channel
Length = 105
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFVDRDGKHFRHILNW 69
++ LN+ G +F T DTL R P+++L + S R + F DRD FRHILN+
Sbjct: 1 LIVLNVSGTRFQTWQDTLERY-PDTLLGS--SERDFFYHPETQQYFFDRDPDIFRHILNF 57
Query: 70 LRDGAV 75
R G +
Sbjct: 58 YRTGKL 63
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 3 KDSDSSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFVDRDGKH 62
K+ ++ LN+ G++F T TL R P+++L + + + F + F DRD +
Sbjct: 7 KNKRQDELIVLNVSGRRFQTWRTTLERY-PDTLLGS--TEKEFFFNEDTKEYFFDRDPEV 63
Query: 63 FRHILNWLRDGAV 75
FR +LN+ R G +
Sbjct: 64 FRCVLNFYRTGKL 76
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 3 KDSDSSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFVDRDGKH 62
K+ ++ LN+ G++F T TL R P+++L + + + F + F DRD +
Sbjct: 29 KNKRQDELIVLNVSGRRFQTWRTTLERY-PDTLLGS--TEKEFFFNEDTKEYFFDRDPEV 85
Query: 63 FRHILNWLRDGAV 75
FR +LN+ R G +
Sbjct: 86 FRCVLNFYRTGKL 98
>pdb|2XT4|A Chain A, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison
Albicidin.
pdb|2XT4|B Chain B, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison Albicidin
Length = 194
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 5/139 (3%)
Query: 166 SRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACMIDCSF 225
S +L+S +F D F A L C+F + + +DC
Sbjct: 22 SGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKM 81
Query: 226 CGADLRSAH-----LQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNL 280
G + SA + L ++ G L G + ++ +AN A+ + A +L
Sbjct: 82 LGVNWTSAQAGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDL 141
Query: 281 RDTHLEGAKLDGANLLGAI 299
+ + KL GA+ + A+
Sbjct: 142 KGSTFHNTKLTGASFIDAV 160
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 13/153 (8%)
Query: 160 LRNVFFSRANLQSAKFRD---VDAEGSI-------FHNATLRECEFXXXXXXXXXXXXXX 209
R F+ A L KFR+ VD S+ F +C+
Sbjct: 36 FRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQAGALS 95
Query: 210 XQSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGAN 269
+ L D+ G + + A+ T A+ E A+ ++LKG+ N L GA+
Sbjct: 96 FERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGAS 155
Query: 270 LQRAYLRHVNLRDTHLEGAKL---DGANLLGAI 299
A H+++ ++ A+ + A+LL ++
Sbjct: 156 FIDAVNYHIDIFHNDIKRARFSLPEAASLLNSL 188
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 3 KDSDSSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFVDRDGKH 62
K+ ++ LN+ G++F T TL R P+++L + + + F + F DRD +
Sbjct: 35 KNKRQDELIVLNVSGRRFQTWRTTLERY-PDTLLGS--TEKEFFFNEDTKEYFFDRDPEV 91
Query: 63 FRHILNWLRDG 73
FR +LN+ R G
Sbjct: 92 FRCVLNFYRTG 102
>pdb|3PSS|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21 Crystal Form)
pdb|3PSS|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21 Crystal Form)
Length = 216
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 24/121 (19%)
Query: 164 FFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACMIDC 223
+F A+L F + EG + L +CE Q ANL A
Sbjct: 112 YFCEAHLTGNNFSYANFEGCL-----LEQCELSGNRW----------QGANLFGA----- 151
Query: 224 SFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANL----QRAYLRHVN 279
S G+DL + D + NL+G +L +L G LR NL G + Q+A L +
Sbjct: 152 SLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIG 211
Query: 280 L 280
L
Sbjct: 212 L 212
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%)
Query: 227 GADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLE 286
G L L ANL GA+L G++L G++ + NLQ LR +L L
Sbjct: 130 GCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLR 189
Query: 287 GAKLDGANL 295
LDG +
Sbjct: 190 RVNLDGVQI 198
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 228 ADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNA----------NLKGANLQRAYLRH 277
A+ L+ +L+ +GANL GA+L G+ L + NL+G +L++ L
Sbjct: 126 ANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPG 185
Query: 278 VNLRDTHLEGAKLD 291
++LR +L+G +++
Sbjct: 186 LDLRRVNLDGVQIN 199
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 233 AHLQTADLTNANLEGANLE----------GANLKGAKLRNANLKGANLQRAYLRHVNLRD 282
AHL + + AN EG LE GANL GA L ++L G+ + VNL+
Sbjct: 116 AHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQG 175
Query: 283 THLEGAKLDGANL 295
L L G +L
Sbjct: 176 CDLRQCDLPGLDL 188
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 225 FCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTH 284
FC A L + A+ LE L G +GA L A+L G++L + ++ +
Sbjct: 113 FCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVN 172
Query: 285 LEGAKLDGANLLG 297
L+G L +L G
Sbjct: 173 LQGCDLRQCDLPG 185
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 51/160 (31%), Gaps = 34/160 (21%)
Query: 159 CLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDA 218
C V F + +L+ +F+ G F L EC F QS LQ
Sbjct: 6 CFEGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESE----QSCLLQ-- 59
Query: 219 CMIDCSFCGADLRSAHLQTADLTNAN----------LEGANLEGANLKGAKLRN------ 262
G DLR A DLT A+ L G N A N
Sbjct: 60 --------GCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXS 111
Query: 263 ----ANLKGANLQRAYLRHVNLRDTHLEGAKLDGANLLGA 298
A+L G N A L L G + GANL GA
Sbjct: 112 YFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGA 151
>pdb|3PSZ|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21212 Crystal Form)
pdb|3PSZ|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21212 Crystal Form)
Length = 216
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 24/121 (19%)
Query: 164 FFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACMIDC 223
+F A+L F + EG + L +CE Q ANL A
Sbjct: 112 YFXEAHLTGNNFSYANFEGCL-----LEQCELSGNRW----------QGANLFGA----- 151
Query: 224 SFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANL----QRAYLRHVN 279
S G+DL + D + NL+G +L +L G LR NL G + Q+A L +
Sbjct: 152 SLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIG 211
Query: 280 L 280
L
Sbjct: 212 L 212
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 228 ADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNA----------NLKGANLQRAYLRH 277
A+ L+ +L+ +GANL GA+L G+ L + NL+G +L++ L
Sbjct: 126 ANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPG 185
Query: 278 VNLRDTHLEGAKLD 291
++LR +L+G +++
Sbjct: 186 LDLRRVNLDGVQIN 199
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 233 AHLQTADLTNANLEGANLE-----GANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEG 287
AHL + + AN EG LE G +GA L A+L G++L + ++ +L+G
Sbjct: 116 AHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQG 175
Query: 288 AKLDGANLLG 297
L +L G
Sbjct: 176 CDLRQCDLPG 185
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 46/149 (30%), Gaps = 24/149 (16%)
Query: 170 LQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACMIDCSFCGAD 229
+ +F D EG F C F + +C++ G D
Sbjct: 7 FEGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAEXRFVDCSFYDRESEQSCLLQ----GCD 62
Query: 230 LRSAHLQTADLTNANLEGANLEGANLKGAK--------------------LRNANLKGAN 269
LR A DLT A+ + G L+ + A+L G N
Sbjct: 63 LREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVKSYFXEAHLTGNN 122
Query: 270 LQRAYLRHVNLRDTHLEGAKLDGANLLGA 298
A L L G + GANL GA
Sbjct: 123 FSYANFEGCLLEQCELSGNRWQGANLFGA 151
>pdb|2XT2|A Chain A, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison
Albicidin.
pdb|2XT2|B Chain B, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison Albicidin
Length = 200
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 11/145 (7%)
Query: 166 SRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACMIDCSF 225
S +L+S +F D F A L C+F + + +DC
Sbjct: 22 SGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKM 81
Query: 226 CGADLRSAHLQTAD-----------LTNANLEGANLEGANLKGAKLRNANLKGANLQRAY 274
G + SA + L ++ G L G + ++ +AN A+ + A
Sbjct: 82 LGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDAD 141
Query: 275 LRHVNLRDTHLEGAKLDGANLLGAI 299
+L+ + KL GA+ + A+
Sbjct: 142 FTQSDLKGSTFHNTKLTGASFIDAV 166
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 227 GADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLE 286
G + + A+ T A+ E A+ ++LKG+ N L GA+ A H+++ ++
Sbjct: 119 GVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIK 178
Query: 287 GAKL---DGANLLGAI 299
A+ + A+LL ++
Sbjct: 179 RARFSLPEAASLLNSL 194
>pdb|2XTW|A Chain A, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|B Chain B, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|C Chain C, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|D Chain D, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
Length = 217
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 5/142 (3%)
Query: 155 FSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSAN 214
FS A L++ F +L A FR+ A G + + +F SA
Sbjct: 59 FSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAY 118
Query: 215 LQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKL-----RNANLKGAN 269
+ + + +F L L A + GA G++L G + R AN +
Sbjct: 119 ITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCD 178
Query: 270 LQRAYLRHVNLRDTHLEGAKLD 291
L + L +++R L+G KLD
Sbjct: 179 LTNSELGDLDIRGVDLQGVKLD 200
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 14/144 (9%)
Query: 165 FSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACMIDCS 224
F+ ++++ F + D G+ C+F A L+DA C
Sbjct: 18 FTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNF----SRAMLKDAIFKSCD 73
Query: 225 FCGADLRSAHLQTADLTNANLEGANLEGANLK----------GAKLRNANLKGANLQRAY 274
AD R++ ++ + +GA+ GA+ A + N NL AN +
Sbjct: 74 LSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVV 133
Query: 275 LRHVNLRDTHLEGAKLDGANLLGA 298
L L + GA++ GA G+
Sbjct: 134 LEKCELWENRWIGAQVLGATFSGS 157
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 215 LQDACMIDCSFCGADLRSAHLQTADLTN-ANLEGANLEGANLKGAKLRNANLKGANLQRA 273
++++ +C F GADL + + +G N A LK A ++ +L A+ + +
Sbjct: 23 IENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNS 82
Query: 274 YLRHVNLRDTHLEGAKLDGANLLGAI 299
+ +R +GA GA+ + I
Sbjct: 83 SALGIEIRHCRAQGADFRGASFMNMI 108
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 155 FSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSAN 214
F A N+ +R SA + + + F L +CE ++
Sbjct: 99 FRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSD 158
Query: 215 LQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRN 262
L F D R+A+ DLTN+ L ++ G +L+G KL N
Sbjct: 159 LSGG-----EFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDN 201
>pdb|2XTX|A Chain A, Structure Of Qnrb1 (M102r-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
pdb|2XTX|B Chain B, Structure Of Qnrb1 (M102r-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
Length = 217
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 5/142 (3%)
Query: 155 FSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSAN 214
FS A L++ F +L A FR+ A G + + +F SA
Sbjct: 59 FSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFRNMITTRTWFCSAY 118
Query: 215 LQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKL-----RNANLKGAN 269
+ + + +F L L A + GA G++L G + R AN +
Sbjct: 119 ITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCD 178
Query: 270 LQRAYLRHVNLRDTHLEGAKLD 291
L + L +++R L+G KLD
Sbjct: 179 LTNSELGDLDIRGVDLQGVKLD 200
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 14/144 (9%)
Query: 165 FSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACMIDCS 224
F+ ++++ F + D G+ C+F A L+DA C
Sbjct: 18 FTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNF----SRAMLKDAIFKSCD 73
Query: 225 FCGADLRSAHLQTADLTNANLEGANLEGANLK----------GAKLRNANLKGANLQRAY 274
AD R++ ++ + +GA+ GA+ + A + N NL AN +
Sbjct: 74 LSMADFRNSSALGIEIRHCRAQGADFRGASFRNMITTRTWFCSAYITNTNLSYANFSKVV 133
Query: 275 LRHVNLRDTHLEGAKLDGANLLGA 298
L L + GA++ GA G+
Sbjct: 134 LEKCELWENRWIGAQVLGATFSGS 157
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 155 FSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSAN 214
F A RN+ +R SA + + + F L +CE ++
Sbjct: 99 FRGASFRNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSD 158
Query: 215 LQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRN 262
L F D R+A+ DLTN+ L ++ G +L+G KL N
Sbjct: 159 LSGG-----EFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDN 201
>pdb|2XTY|A Chain A, Structure Of Qnrb1 (R167e-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
pdb|2XTY|B Chain B, Structure Of Qnrb1 (R167e-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
Length = 217
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 5/142 (3%)
Query: 155 FSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSAN 214
FS A L++ F +L A FR+ A G + + +F SA
Sbjct: 59 FSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAY 118
Query: 215 LQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGAN----- 269
+ + + +F L L A + GA G++L G + + + AN
Sbjct: 119 ITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCD 178
Query: 270 LQRAYLRHVNLRDTHLEGAKLD 291
L + L +++R L+G KLD
Sbjct: 179 LTNSELGDLDIRGVDLQGVKLD 200
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 14/144 (9%)
Query: 165 FSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACMIDCS 224
F+ ++++ F + D G+ C+F A L+DA C
Sbjct: 18 FTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNF----SRAMLKDAIFKSCD 73
Query: 225 FCGADLRSAHLQTADLTNANLEGANLEGANLK----------GAKLRNANLKGANLQRAY 274
AD R++ ++ + +GA+ GA+ A + N NL AN +
Sbjct: 74 LSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVV 133
Query: 275 LRHVNLRDTHLEGAKLDGANLLGA 298
L L + GA++ GA G+
Sbjct: 134 LEKCELWENRWIGAQVLGATFSGS 157
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 215 LQDACMIDCSFCGADLRSAHLQTADLTN-ANLEGANLEGANLKGAKLRNANLKGANLQRA 273
++++ +C F GADL + + +G N A LK A ++ +L A+ + +
Sbjct: 23 IENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNS 82
Query: 274 YLRHVNLRDTHLEGAKLDGANLLGAI 299
+ +R +GA GA+ + I
Sbjct: 83 SALGIEIRHCRAQGADFRGASFMNMI 108
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 155 FSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSAN 214
F A N+ +R SA + + + F L +CE ++
Sbjct: 99 FRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSD 158
Query: 215 LQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRN 262
L F D +A+ DLTN+ L ++ G +L+G KL N
Sbjct: 159 LSGG-----EFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDN 201
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 239 DLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGANLLGA 298
DL+ +L G NL N GA L + +L+ ++L +A L + + +++ L ANL
Sbjct: 38 DLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNC 97
Query: 299 I 299
I
Sbjct: 98 I 98
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 225 FCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTH 284
F GA L L+ +DL+ A LE + + + L ANL + RA + N +++
Sbjct: 54 FSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNC-IIRALFENSNFSNSN 112
Query: 285 LEGAKLDGANLL 296
L+ A G++ +
Sbjct: 113 LKNASFKGSSYI 124
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 212 SANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLR----NANLKG 267
S N A + D +DL A L+ N+ L N ANL +R N+N
Sbjct: 51 SVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSN 110
Query: 268 ANLQRA------YLRHVN-LRDTHLEGA-KLDGANLLGAI 299
+NL+ A Y+++ L + L GA + G L GAI
Sbjct: 111 SNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAI 150
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 239 DLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGANLLGA 298
DL+ +L G NL N GA L + +L+ ++L +A L + + +++ L ANL
Sbjct: 41 DLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNC 100
Query: 299 I 299
I
Sbjct: 101 I 101
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 225 FCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTH 284
F GA L L+ +DL+ A LE + + + L ANL + RA + N +++
Sbjct: 57 FSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNC-IIRALFENSNFSNSN 115
Query: 285 LEGAKLDGANLL 296
L+ A G++ +
Sbjct: 116 LKNASFKGSSYI 127
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 212 SANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLR----NANLKG 267
S N A + D +DL A L+ N+ L N ANL +R N+N
Sbjct: 54 SVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSN 113
Query: 268 ANLQRA------YLRHVN-LRDTHLEGA-KLDGANLLGAI 299
+NL+ A Y+++ L + L GA + G L GAI
Sbjct: 114 SNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAI 153
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 5 SDSSSMVRLNIGGKKFYTTIDTLTR--REPESMLAAMFSGRHTVFQD------SEGYIFV 56
S S M+R +I K +YT + L + + P +L ++ +D ++ +F
Sbjct: 369 SISVEMLREDI--KDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFC 426
Query: 57 DRDGKHFRHILNWLRDGAVPTLTE 80
DR+GK FR+ +L D V LTE
Sbjct: 427 DRNGKSFRY---YLHDLQVDFLTE 447
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 5 SDSSSMVRLNIGGKKFYTTIDTLTR--REPESMLAAMFSGRHTVFQD------SEGYIFV 56
S S M+R +I K +YT + L + + P +L ++ +D ++ +F
Sbjct: 375 SISVEMLREDI--KDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFC 432
Query: 57 DRDGKHFRHILNWLRDGAVPTLTE 80
DR+GK FR+ +L D V LTE
Sbjct: 433 DRNGKSFRY---YLHDLQVDFLTE 453
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 61 KHF-RHILNWL--RDGAVPTLTESKFL---ELLREAEYYQLLGLIERIHAVINKRKEDNE 114
KHF +H+L + DG V SKFL E++ ++Y +E IH+ DN
Sbjct: 85 KHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNY 144
Query: 115 LDTELTRIDIIKCIQS 130
+ E R+++ I++
Sbjct: 145 IKDEKERLNLFHAIEN 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,163,191
Number of Sequences: 62578
Number of extensions: 255400
Number of successful extensions: 733
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 106
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)