Query 022265
Match_columns 300
No_of_seqs 311 out of 2275
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 16:36:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j8k_A NP275-NP276; pentapepti 100.0 1.6E-31 5.3E-36 221.2 13.2 177 116-292 18-194 (201)
2 3du1_X ALL3740 protein, HETL; 100.0 1.5E-30 5.2E-35 224.1 14.0 8 119-126 21-28 (257)
3 3du1_X ALL3740 protein, HETL; 100.0 1.4E-30 4.7E-35 224.4 11.5 46 254-299 204-249 (257)
4 2w7z_A EFSQNR, pentapeptide re 100.0 1E-31 3.5E-36 225.2 2.8 169 131-299 28-196 (214)
5 2j8k_A NP275-NP276; pentapepti 100.0 5E-30 1.7E-34 212.2 12.3 161 131-291 38-198 (201)
6 2xty_A QNRB1; cell cycle, pent 100.0 4.4E-30 1.5E-34 215.7 11.4 168 132-299 20-198 (217)
7 2xt2_A ALBG, MCBG-like protein 100.0 6E-30 2.1E-34 212.1 9.2 166 132-297 8-179 (200)
8 3pss_A QNR; pentapeptide repea 100.0 1.9E-29 6.6E-34 211.6 12.0 168 131-298 18-196 (216)
9 2xty_A QNRB1; cell cycle, pent 100.0 1.1E-29 3.9E-34 213.2 10.4 125 173-297 57-191 (217)
10 3drz_A BTB/POZ domain-containi 100.0 1.8E-29 6E-34 187.1 10.0 103 5-108 2-106 (107)
11 2w7z_A EFSQNR, pentapeptide re 100.0 3.1E-30 1E-34 216.2 4.9 170 128-297 30-199 (214)
12 3pss_A QNR; pentapeptide repea 100.0 1.4E-29 4.9E-34 212.4 8.8 22 255-276 143-164 (216)
13 2xt2_A ALBG, MCBG-like protein 100.0 1.6E-29 5.6E-34 209.5 8.4 167 130-296 11-183 (200)
14 2bm5_A MFPA, RV3361C, pentapep 100.0 1.4E-29 4.7E-34 207.6 7.7 163 133-295 5-167 (186)
15 2bm5_A MFPA, RV3361C, pentapep 100.0 3.1E-29 1.1E-33 205.5 6.4 162 131-292 8-169 (186)
16 1t1d_A Protein (potassium chan 99.9 4.1E-28 1.4E-32 176.2 8.1 89 9-99 1-90 (100)
17 3drx_A BTB/POZ domain-containi 99.9 1.6E-27 5.6E-32 192.4 11.8 106 4-110 7-114 (202)
18 3kvt_A Potassium channel prote 99.9 6.2E-28 2.1E-32 180.0 7.7 91 7-99 3-93 (115)
19 1s1g_A Potassium voltage-gated 99.9 1.4E-27 4.8E-32 180.3 5.6 93 4-99 8-100 (124)
20 1nn7_A Potassium channel KV4.2 99.9 4E-27 1.4E-31 173.2 5.5 86 10-98 1-86 (105)
21 2nz0_B Potassium voltage-gated 99.9 4E-27 1.4E-31 181.2 5.0 92 4-98 30-121 (140)
22 2o6w_A Repeat five residue (RF 99.9 1.1E-24 3.8E-29 171.8 9.8 20 134-153 14-33 (150)
23 2o6w_A Repeat five residue (RF 99.9 2.9E-24 9.9E-29 169.4 9.8 24 136-159 11-34 (150)
24 3nb2_A Secreted effector prote 99.9 9.4E-24 3.2E-28 197.6 8.7 93 117-209 5-98 (613)
25 3nb2_A Secreted effector prote 99.9 1.5E-23 5E-28 196.3 9.1 71 134-204 28-98 (613)
26 2f3l_A RFR-domain; beta helix, 99.9 1.9E-23 6.5E-28 170.1 4.1 109 172-280 51-159 (184)
27 2f3l_A RFR-domain; beta helix, 99.9 4.5E-23 1.6E-27 167.8 3.5 51 164-214 53-103 (184)
28 2r9r_B Paddle chimera voltage 99.8 3.9E-21 1.3E-25 179.9 6.3 93 5-99 48-141 (514)
29 2qyu_A Secreted effector prote 99.6 4.9E-16 1.7E-20 143.5 6.3 9 120-128 14-22 (627)
30 1r29_A B-cell lymphoma 6 prote 98.5 3.5E-07 1.2E-11 69.1 8.1 93 9-107 30-124 (127)
31 2vpk_A Myoneurin; transcriptio 98.5 4.9E-07 1.7E-11 67.2 7.8 88 10-106 24-114 (116)
32 2ppi_A Gigaxonin; BTB domain, 98.3 8.2E-07 2.8E-11 68.7 6.8 94 9-105 48-142 (144)
33 2vkp_A BTB/POZ domain-containi 98.3 1.8E-06 6E-11 63.3 7.9 93 9-107 9-106 (109)
34 3b84_A Zinc finger and BTB dom 98.3 1.4E-06 4.9E-11 65.0 6.8 88 10-106 26-114 (119)
35 3fkc_A Transcriptional regulat 98.2 3.8E-06 1.3E-10 62.4 7.7 81 10-99 33-114 (116)
36 2if5_A Zinc finger and BTB dom 98.2 4.3E-06 1.5E-10 62.4 8.0 93 9-106 26-119 (120)
37 2yy9_A Zinc finger and BTB dom 98.2 1.5E-06 5.2E-11 66.4 5.6 91 10-109 27-118 (135)
38 1buo_A POZ domain, protein (pr 98.2 3.6E-06 1.2E-10 62.9 7.4 88 10-107 30-118 (121)
39 2z8h_A Transcription regulator 98.2 3.8E-06 1.3E-10 64.4 7.5 93 10-109 38-132 (138)
40 3htm_A Speckle-type POZ protei 98.1 7.8E-06 2.7E-10 64.8 8.1 95 10-109 36-131 (172)
41 3ga1_A Nucleus accumbens-assoc 98.1 1E-06 3.6E-11 66.7 1.8 88 10-106 35-124 (129)
42 4eoz_A Speckle-type POZ protei 98.1 4.1E-06 1.4E-10 64.5 5.2 93 10-107 27-120 (145)
43 2q81_A MIZ-1 protein; BTB/POZ 98.0 9.7E-06 3.3E-10 60.4 6.7 87 10-106 29-116 (119)
44 3hve_A Gigaxonin; ubiquitin, c 98.0 1.3E-05 4.6E-10 67.9 7.4 98 9-109 32-130 (256)
45 2ihc_A Transcription regulator 97.9 2.4E-06 8.3E-11 64.2 1.1 88 10-104 31-120 (124)
46 3ohu_A Transcription regulator 97.8 4.6E-06 1.6E-10 62.7 1.2 86 10-102 34-121 (125)
47 3hqi_A Speckle-type POZ protei 97.7 6.9E-05 2.4E-09 65.4 7.4 96 9-109 175-271 (312)
48 3m5b_A Zinc finger and BTB dom 97.6 6.1E-05 2.1E-09 56.0 4.9 84 10-107 32-116 (119)
49 3i3n_A Kelch-like protein 11; 97.4 7.6E-05 2.6E-09 64.1 3.4 95 10-109 34-138 (279)
50 2ast_A S-phase kinase-associat 94.7 0.18 6.2E-06 39.0 8.7 93 11-106 3-122 (159)
51 1fs1_B SKP1, cyclin A/CDK2-ass 89.5 1.4 4.9E-05 33.1 7.5 87 11-106 4-117 (141)
52 4ajy_C Transcription elongatio 89.0 1.3 4.4E-05 30.9 6.5 77 15-94 9-96 (97)
53 3v7d_A Suppressor of kinetocho 74.0 19 0.00064 27.8 8.4 94 8-104 6-127 (169)
54 2p1m_A SKP1-like protein 1A; F 69.8 1.2 4E-05 34.4 0.6 90 9-106 4-121 (160)
55 1vcb_B Protein (elongin C); tu 66.2 13 0.00043 26.6 5.5 65 5-72 13-79 (112)
56 1hv2_A Elongin C, ELC1; protei 58.0 27 0.00093 24.1 5.9 59 8-72 3-63 (99)
57 2fnj_C Transcription elongatio 51.2 21 0.00072 24.5 4.3 59 11-72 3-63 (96)
No 1
>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A
Probab=99.97 E-value=1.6e-31 Score=221.21 Aligned_cols=177 Identities=33% Similarity=0.420 Sum_probs=113.2
Q ss_pred ccchhHHHHHHHhhccCceeccccccCCCCCCCcCCccccccccccceeccccccccccccccccCCccccccccccccc
Q 022265 116 DTELTRIDIIKCIQSEKVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEF 195 (300)
Q Consensus 116 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f 195 (300)
...++..++.+.+.....+|++++|++++|++++|++++|++|+|.+|+|.+|+|.+++|.+++|.+|+|.+|+|.+++|
T Consensus 18 ~~~m~~~~ll~~~~~g~~~~~~~dl~~~~l~~~~l~~~~l~~a~l~~a~l~~a~ls~a~l~~a~l~~a~l~~a~l~~a~l 97 (201)
T 2j8k_A 18 GSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADL 97 (201)
T ss_dssp SSBCCHHHHHHHHHTTCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred cccCCHHHHHHHHHcCccccccCcCCCCccCCCccCCCCcCCCccCCCccCCCccCcCCCCCCCcCCcCcCCCEECCCCc
Confidence 44577778887776667788888888888888888877777777777777777777777777777777777777776666
Q ss_pred cccccccceeccccccccccccceecCceeecccccccccccccccccccCCCcccCceecCccccCccccCcccCCccc
Q 022265 196 AGANLRGALLAGANLQSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYL 275 (300)
Q Consensus 196 ~~~~l~~~~~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (300)
.+++|.++.|.+++|.+++|.++.|.+++|.+++|++++|.+++|++++|++|+|.+++|.+++|.+++|.+++|.+++|
T Consensus 98 ~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~L~~a~l~~a~l~~a~l~~a~l~~a~l 177 (201)
T 2j8k_A 98 SDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANL 177 (201)
T ss_dssp TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred cCCccCCCEeCccCcCCCCcccCcCccccccCCEEeCCEeeecCcCcCCCCCCCCCCCCcCCCEeCCCCcCCCCCCCCCC
Confidence 66666666666666666666666666555555555555555555555555555555555555555555444444444444
Q ss_pred cCccccCCccCCceecC
Q 022265 276 RHVNLRDTHLEGAKLDG 292 (300)
Q Consensus 276 ~~~~~~~~~~~~~~l~~ 292 (300)
.++++++++|+++.+.+
T Consensus 178 ~~a~l~~a~l~ga~l~~ 194 (201)
T 2j8k_A 178 TGANLEDANLEGTILEG 194 (201)
T ss_dssp TTCBCTTCBCTTSTTTT
T ss_pred CCCCcCCCEECcCCCCC
Confidence 44444444444444433
No 2
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}
Probab=99.97 E-value=1.5e-30 Score=224.05 Aligned_cols=8 Identities=13% Similarity=0.376 Sum_probs=3.0
Q ss_pred hhHHHHHH
Q 022265 119 LTRIDIIK 126 (300)
Q Consensus 119 l~~~~~~~ 126 (300)
++..++.+
T Consensus 21 m~~~e~l~ 28 (257)
T 3du1_X 21 MNVGEILR 28 (257)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 33333333
No 3
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}
Probab=99.97 E-value=1.4e-30 Score=224.35 Aligned_cols=46 Identities=50% Similarity=0.673 Sum_probs=23.3
Q ss_pred eecCccccCccccCcccCCccccCccccCCccCCceecCCccCCCc
Q 022265 254 NLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGANLLGAI 299 (300)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~g~i 299 (300)
+|.+++|++++|++|+|.++.|.+++|++++|.++.|.+++|.||+
T Consensus 204 dl~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~ga~l~~a~l~ga~ 249 (257)
T 3du1_X 204 DLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAI 249 (257)
T ss_dssp BCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred ccCCCccCCCcCCCCcCCCCcCCCCCCCCCCccCCEeCCCcccccC
Confidence 3444444444444444445555555555555555555555555553
No 4
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.96 E-value=1e-31 Score=225.16 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=115.1
Q ss_pred cCceeccccccCCCCCCCcCCccccccccccceeccccccccccccccccCCccccccccccccccccccccceeccccc
Q 022265 131 EKVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRGALLAGANL 210 (300)
Q Consensus 131 ~~~~~~~~~l~~~~l~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~~~~ 210 (300)
++.+++++.+.+++|++++|++++|+++.|.+|+|.+|+|++++|.++.|.+|+|.+++|.++.|.++.|.+|+|.+++|
T Consensus 28 ~~~~l~~~~~~~~~l~~~~l~~~~l~~~~f~~~~~~~~~~~~a~l~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f 107 (214)
T 2w7z_A 28 DEAILENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNF 107 (214)
T ss_dssp TTCEEESSEEEEEECCSCEEESCEEEEEEEEEEECTTCEEETCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBC
T ss_pred ccccccCCEEecceeecCcccCCEeccCEEEcCEEeCCccCCCEecCCEEEeeECcCCCccCCEEEeeEEeCCeeeCCCc
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccccccceecCceeecccccccccccccccccccCCCcccCceecCccccCccccCcccCCccccCccccCCccCCcee
Q 022265 211 QSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKL 290 (300)
Q Consensus 211 ~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 290 (300)
.++.+.++.|.+|++.+++|.++++.++.|.+|+|.+++|.+++|++++|.+|+|.+++|.++.|.+++|++++|.++.+
T Consensus 108 ~~a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~L~~a~f~~~~L~~a~f~~a~l~~~~l~~a~l~~~~~ 187 (214)
T 2w7z_A 108 ADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTF 187 (214)
T ss_dssp TTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCCCTTCBCTTSBCSCCBC
T ss_pred CCCEeeeeEEeCCCCCCCcCCcCccCceEEEecccCCCCccCCEEEEEEEEecccccCEecCCeeccCCcccCCcCceEc
Confidence 66666666666666666666666666666666666666666666677777777777777777777777777777777777
Q ss_pred cCCccCCCc
Q 022265 291 DGANLLGAI 299 (300)
Q Consensus 291 ~~~~l~g~i 299 (300)
.+++|.||+
T Consensus 188 ~~a~l~ga~ 196 (214)
T 2w7z_A 188 SPNYLSGLX 196 (214)
T ss_dssp CGGGCTTCE
T ss_pred CHHHcCCcc
Confidence 777776664
No 5
>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A
Probab=99.96 E-value=5e-30 Score=212.16 Aligned_cols=161 Identities=35% Similarity=0.433 Sum_probs=108.9
Q ss_pred cCceeccccccCCCCCCCcCCccccccccccceeccccccccccccccccCCccccccccccccccccccccceeccccc
Q 022265 131 EKVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRGALLAGANL 210 (300)
Q Consensus 131 ~~~~~~~~~l~~~~l~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~~~~ 210 (300)
.+.+|++++|.+++|++++|.+++|++|.|++|+|.+++|.+++|.+|+|.+|+|.+++|.++.|.+|+|.+++|.+++|
T Consensus 38 ~~~dl~~~~l~~~~l~~~~l~~a~l~~a~l~~a~ls~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l 117 (201)
T 2j8k_A 38 SIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVL 117 (201)
T ss_dssp TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred ccCcCCCCccCCCccCCCCcCCCccCCCccCCCccCcCCCCCCCcCCcCcCCCEECCCCccCCccCCCEeCccCcCCCCc
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccccccceecCceeecccccccccccccccccccCCCcccCceecCccccCccccCcccCCccccCccccCCccCCcee
Q 022265 211 QSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKL 290 (300)
Q Consensus 211 ~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 290 (300)
.+++|.++.|.+++|.+++|.+++|.+++|.+|+|++|+|.+++|.+++|.+++|++++|++++|++++++++.+.+...
T Consensus 118 ~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~L~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~ga~l~~~~~ 197 (201)
T 2j8k_A 118 NQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGTILEGGNN 197 (201)
T ss_dssp TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTSTTTTC--
T ss_pred ccCcCccccccCCEEeCCEeeecCcCcCCCCCCCCCCCCcCCCEeCCCCcCCCCCCCCCCCCCCcCCCEECcCCCCCCcc
Confidence 66666666666666666677777777777777777777777777777777777777777777777777777777766654
Q ss_pred c
Q 022265 291 D 291 (300)
Q Consensus 291 ~ 291 (300)
+
T Consensus 198 ~ 198 (201)
T 2j8k_A 198 N 198 (201)
T ss_dssp -
T ss_pred C
Confidence 4
No 6
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=99.96 E-value=4.4e-30 Score=215.66 Aligned_cols=168 Identities=23% Similarity=0.317 Sum_probs=99.5
Q ss_pred CceeccccccCCCCCCCcCCccccccccccc------eeccccccccccccccccCCcccccccccccccccccccccee
Q 022265 132 KVRFRGLNLSGLDLSKLDLSLVDFSYACLRN------VFFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRGALL 205 (300)
Q Consensus 132 ~~~~~~~~l~~~~l~~~~l~~~~f~~~~l~~------~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~ 205 (300)
+..|++++|.+++|++++|+++.|++|.|.+ |+|.+++|.++.|.+|+|.+++|.+++|.++.|.+|+|.+++|
T Consensus 20 ~~~l~~~~f~~~~f~~a~l~~a~f~~~~f~~~~~l~~~~f~~a~l~~a~f~~~~l~~a~f~~a~l~~a~f~~~~l~~a~f 99 (217)
T 2xty_A 20 GEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADF 99 (217)
T ss_dssp TCEEESCEEESCBCTTCBCTTCEEESCBCCBTTTTBCCBCTTCBCTTCEEESCBCTTCBCTTCBCTTEEEESCBCTTCBC
T ss_pred CCeecCCEEccCcCCCCcccCCEecCCEeecCccccccccCCCccCCCCcCCCCCCCCccCCCccCCCcccCCCcCCCCc
Confidence 4455555555555555555555555555555 6666666666666666666666665555555555555555555
Q ss_pred ccccccccc-----cccceecCceeecccccccccccccccccccCCCcccCceecCccccCccccCcccCCccccCccc
Q 022265 206 AGANLQSAN-----LQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNL 280 (300)
Q Consensus 206 ~~~~~~~~~-----f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (300)
.+++|.++. |.++.|.+|+|.+++|.+++|.+++|.+|+|.+++|.+++|++++|++|+|.+++|.+++|++++|
T Consensus 100 ~~a~l~~~~~~~~~~~~a~l~~~~l~~a~l~~a~l~~~~l~~~~~~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~adl 179 (217)
T 2xty_A 100 RGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDL 179 (217)
T ss_dssp TTCBCC--------CCCEEEESCBCTTCBCTTCBCTTCBCCSCBCTTCBCTTCBCTTCBCTTCBCTTCCTTSSBCTTCBC
T ss_pred CCCccccCccccceeeeceecCCccCCCcccccccccCcccCCCcCCCeeCcCEECCCccCCCCCCCCCcCCCcCCCCcC
Confidence 555555444 333345555555555666666666666666666666666666666666666666666666666777
Q ss_pred cCCccCCceecCCccCCCc
Q 022265 281 RDTHLEGAKLDGANLLGAI 299 (300)
Q Consensus 281 ~~~~~~~~~l~~~~l~g~i 299 (300)
+++++.++.+.+++|.||+
T Consensus 180 ~~a~l~~~~l~~a~l~ga~ 198 (217)
T 2xty_A 180 TNSELGDLDIRGVDLQGVK 198 (217)
T ss_dssp TTCBCTTCCTTTSCCTTCE
T ss_pred CCCCcCCCcCCCCccCcCE
Confidence 7777777777777777764
No 7
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.96 E-value=6e-30 Score=212.15 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=70.1
Q ss_pred CceeccccccCCCCCCCcCCccccccccccceeccccccccccccccccCCccccccccccccccccccccceecccccc
Q 022265 132 KVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRGALLAGANLQ 211 (300)
Q Consensus 132 ~~~~~~~~l~~~~l~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~~~~~ 211 (300)
+..+.+++|.+++|++++|++++|++|.|.+|+|.+++|.++.|.+|.|.+|+|.+++|.++.|.++.|.+|+|.+++|.
T Consensus 8 ~~~~~~~~f~~~~l~~~~l~~~~~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~ 87 (200)
T 2xt2_A 8 SKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWT 87 (200)
T ss_dssp CSEEESCEEESCBCTTCEEESCEEESCEEESCBCTTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGG
T ss_pred cchhcCCEeecCccccCccccCEEccCEEEeeeccCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCccc
Confidence 34444444555454444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred ccc------cccceecCceeecccccccccccccccccccCCCcccCceecCccccCccccCcccCCccccCccccCCcc
Q 022265 212 SAN------LQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHL 285 (300)
Q Consensus 212 ~~~------f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 285 (300)
++. +.++.|.+|++.+++|.++++.+++|.+|+|.+++|.++++++++|.+|+|.+++|.+++|.+++|+++.+
T Consensus 88 ~a~~~~~~~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l 167 (200)
T 2xt2_A 88 SAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVN 167 (200)
T ss_dssp GSCCCSSCCTTSEEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBCTTCBS
T ss_pred cCcccccccccceEEEcCcccccEEccCccCCCEecCCEeecccCCCCccccCCccCcccCCCCccCCccccCCcCCCCc
Confidence 443 33333333333333333333333333333333333333333333333333333333333333344444333
Q ss_pred CCceecCCccCC
Q 022265 286 EGAKLDGANLLG 297 (300)
Q Consensus 286 ~~~~l~~~~l~g 297 (300)
.++.+.+++|.|
T Consensus 168 ~~~~~~~~~l~g 179 (200)
T 2xt2_A 168 YHIDIFHNDIKR 179 (200)
T ss_dssp CCCCTTSSBCTT
T ss_pred cccccccccccC
Confidence 333333333333
No 8
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=99.96 E-value=1.9e-29 Score=211.60 Aligned_cols=168 Identities=23% Similarity=0.325 Sum_probs=105.3
Q ss_pred cCceeccccccCCCCCCCcCCcccccccccc------ceeccccccccccccccccCCccccccccccccccccccccce
Q 022265 131 EKVRFRGLNLSGLDLSKLDLSLVDFSYACLR------NVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRGAL 204 (300)
Q Consensus 131 ~~~~~~~~~l~~~~l~~~~l~~~~f~~~~l~------~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~ 204 (300)
.+..|.+++|.+++|++++|+++.|.+|.|. +++|.+++|.++.|.+|+|.+++|.++.|.++.|.+|+|.+++
T Consensus 18 ~~~~f~~~~f~~~~f~~a~l~~~~f~~~~f~~~~~l~~~~f~~a~l~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~ 97 (216)
T 3pss_A 18 EGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGIN 97 (216)
T ss_dssp SSCEEESCEEESCBCTTCBCTTCEEESCBCCBTTTTBCCBCTTCBCTTCEEESCBCTTCBCTTCBCTTEEEESCBCTTCB
T ss_pred cCCEecCCEEeccccccCcccCCEEEEeEeccCCccCCcEeCCCCccCCCcCccCCCCCccCCCCcccCCcccCcccCCC
Confidence 4556666666666666666666666666665 7777777777777777777777777777777777777777777
Q ss_pred eccccccccccccceecCceeecccccccccccccccccccCCCcccCceecCccccCcccc-----CcccCCccccCcc
Q 022265 205 LAGANLQSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLK-----GANLQRAYLRHVN 279 (300)
Q Consensus 205 ~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~ 279 (300)
|.+++|.++.+.++.+.++.|.+++|++++|.+++|.+|+|.+++|.+++|.+++|++++|+ ++++.+++|++++
T Consensus 98 f~~a~l~~~~~~~~~~~~a~~~~~~l~~a~~~~a~l~~~~l~~a~~~~a~l~~a~~~~a~l~~a~~~~a~l~~~~l~~a~ 177 (216)
T 3pss_A 98 FSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCD 177 (216)
T ss_dssp CTTCBCEEEEETTEEEECEEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCSCCGGGSBCTTCB
T ss_pred cccCccccccccccceecCEEcccCcccCCCCcCEeCCCeecCCCccCCEecCCEeecccccCCCccCCeecCcccCCCC
Confidence 77777766666655555555555555555555555555555444444444444444444444 4444445555555
Q ss_pred ccCCccCCceecCCccCCC
Q 022265 280 LRDTHLEGAKLDGANLLGA 298 (300)
Q Consensus 280 ~~~~~~~~~~l~~~~l~g~ 298 (300)
|+++++.++.+.+++|.|+
T Consensus 178 l~~a~l~~~~l~~~~l~ga 196 (216)
T 3pss_A 178 LRQCDLPGLDLRRVNLDGV 196 (216)
T ss_dssp CTTCCCTTCCTTTSCCTTC
T ss_pred ccCCEecCcccccCcccCc
Confidence 5555555555555666655
No 9
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=99.96 E-value=1.1e-29 Score=213.18 Aligned_cols=125 Identities=18% Similarity=0.315 Sum_probs=51.3
Q ss_pred ccccccccCCccccccccccccccccccccceeccccccccccccceecCce----------eecccccccccccccccc
Q 022265 173 AKFRDVDAEGSIFHNATLRECEFAGANLRGALLAGANLQSANLQDACMIDCS----------FCGADLRSAHLQTADLTN 242 (300)
Q Consensus 173 ~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~~~~~~~~f~~~~l~~~~----------f~~~~l~~~~f~~~~~~~ 242 (300)
|+|.+++|.++.|.+|+|.+++|.+++|.++.|.+++|.+++|.++.|.++. |.+++|++++|.+++|.+
T Consensus 57 ~~f~~a~l~~a~f~~~~l~~a~f~~a~l~~a~f~~~~l~~a~f~~a~l~~~~~~~~~~~~a~l~~~~l~~a~l~~a~l~~ 136 (217)
T 2xty_A 57 CNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEK 136 (217)
T ss_dssp CBCTTCBCTTCEEESCBCTTCBCTTCBCTTEEEESCBCTTCBCTTCBCC--------CCCEEEESCBCTTCBCTTCBCTT
T ss_pred cccCCCccCCCCcCCCCCCCCccCCCccCCCcccCCCcCCCCcCCCccccCccccceeeeceecCCccCCCccccccccc
Confidence 4444444444444444444444444444444444444444444444444443 333333333333333333
Q ss_pred cccCCCcccCceecCccccCccccCcccCCccccCccccCCccCCceecCCccCC
Q 022265 243 ANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGANLLG 297 (300)
Q Consensus 243 ~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~g 297 (300)
++|++++|.+++|.+++|.+++|++|+|.+++|.+++|++++|+++.+.++++.+
T Consensus 137 ~~l~~~~~~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~adl~~a~l~~~~l~~ 191 (217)
T 2xty_A 137 CELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRG 191 (217)
T ss_dssp CBCCSCBCTTCBCTTCBCTTCBCTTCBCTTCCTTSSBCTTCBCTTCBCTTCCTTT
T ss_pred CcccCCCcCCCeeCcCEECCCccCCCCCCCCCcCCCcCCCCcCCCCCcCCCcCCC
Confidence 3334444444444444444444444444444444444444444444444444443
No 10
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=99.96 E-value=1.8e-29 Score=187.14 Aligned_cols=103 Identities=34% Similarity=0.520 Sum_probs=90.1
Q ss_pred CCCCCcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCC--CcccCCCCcEEEcCCCCcHHHHHHHHhcCCCCCCChHH
Q 022265 5 SDSSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRH--TVFQDSEGYIFVDRDGKHFRHILNWLRDGAVPTLTESK 82 (300)
Q Consensus 5 ~~~~~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~--~~~~~~~~~~fiDrdp~~F~~Il~~lr~g~~~~~~~~~ 82 (300)
...+++|+|||||++|+|+++||++ +|+|+|++|+++.. +...+++|+|||||||.+|++||+|||+|+++.+.+.+
T Consensus 2 g~~~~~v~LNVGG~~f~t~~~TL~~-~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~~p~~~~ 80 (107)
T 3drz_A 2 GSVSKWVRLNVGGTYFLTTRQTLCR-DPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLA 80 (107)
T ss_dssp ---CCEEEEEETTEEEEEEHHHHTS-STTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCCCCTTSC
T ss_pred CCCCCEEEEEECCEEEEECHHHHhc-CCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeCCCCCCC
Confidence 3568999999999999999999995 99999999998753 22356889999999999999999999999998877777
Q ss_pred HHHHHHHHhhhchhhHHHHHHHhhhh
Q 022265 83 FLELLREAEYYQLLGLIERIHAVINK 108 (300)
Q Consensus 83 ~~~l~~Ea~f~~l~~l~~~~~~~i~~ 108 (300)
...+++||+||+|.+|++.+++.|.+
T Consensus 81 ~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 81 EEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88999999999999999999887654
No 11
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.96 E-value=3.1e-30 Score=216.17 Aligned_cols=170 Identities=16% Similarity=0.205 Sum_probs=152.4
Q ss_pred hhccCceeccccccCCCCCCCcCCccccccccccceeccccccccccccccccCCccccccccccccccccccccceecc
Q 022265 128 IQSEKVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRGALLAG 207 (300)
Q Consensus 128 ~~~~~~~~~~~~l~~~~l~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~ 207 (300)
..+.+..|.+++|.+++|++++|+++.|.+|+|.+++|.+++|.++.|.+|+|.+++|.++.|.++.|.+|+|.+++|.+
T Consensus 30 ~~l~~~~~~~~~l~~~~l~~~~l~~~~f~~~~~~~~~~~~a~l~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~ 109 (214)
T 2w7z_A 30 AILENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFAD 109 (214)
T ss_dssp CEEESSEEEEEECCSCEEESCEEEEEEEEEEECTTCEEETCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTT
T ss_pred ccccCCEEecceeecCcccCCEeccCEEEcCEEeCCccCCCEecCCEEEeeECcCCCccCCEEEeeEEeCCeeeCCCcCC
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccceecCceeecccccccccccccccccccCCCcccCceecCccccCccccCcccCCccccCccccCCccCC
Q 022265 208 ANLQSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEG 287 (300)
Q Consensus 208 ~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 287 (300)
++|.++.|.+|.+.+++|.+++|.++.|.+|+|.+++|++|+|.+++|.+|+|.+++|.+++|.+++|+++++.++++.+
T Consensus 110 a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~L~~a~f~~~~L~~a~f~~a~l~~~~l~~a~l~~~~~~~ 189 (214)
T 2w7z_A 110 SYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSP 189 (214)
T ss_dssp CEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCCCTTCBCTTSBCSCCBCCG
T ss_pred CEeeeeEEeCCCCCCCcCCcCccCceEEEecccCCCCccCCEEEEEEEEecccccCEecCCeeccCCcccCCcCceEcCH
Confidence 99999999999999999999999999999999999999999998888888888888888888888888888888888888
Q ss_pred ceecCCccCC
Q 022265 288 AKLDGANLLG 297 (300)
Q Consensus 288 ~~l~~~~l~g 297 (300)
+.|.++.+.+
T Consensus 190 a~l~ga~~~~ 199 (214)
T 2w7z_A 190 NYLSGLXVTP 199 (214)
T ss_dssp GGCTTCEECH
T ss_pred HHcCCcccCH
Confidence 8888887754
No 12
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=99.96 E-value=1.4e-29 Score=212.40 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=8.0
Q ss_pred ecCccccCccccCcccCCcccc
Q 022265 255 LKGAKLRNANLKGANLQRAYLR 276 (300)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~ 276 (300)
|.+++|.+++|++++|.++.|.
T Consensus 143 ~~~a~l~~a~~~~a~l~~a~~~ 164 (216)
T 3pss_A 143 WQGANLFGASLAGSDLSGSEFG 164 (216)
T ss_dssp CTTCBCTTCBCTTCBCTTCBCC
T ss_pred ccCCEecCCEeecccccCCCcc
Confidence 3333333333333333333333
No 13
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.96 E-value=1.6e-29 Score=209.50 Aligned_cols=167 Identities=15% Similarity=0.214 Sum_probs=101.1
Q ss_pred ccCceeccccccCCCCCCCcCCccccccccccceeccccccccccccccccCCccccccccccccccccccccceecccc
Q 022265 130 SEKVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRGALLAGAN 209 (300)
Q Consensus 130 ~~~~~~~~~~l~~~~l~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~~~ 209 (300)
+.+..|.+++|++++|++++|.++.|++|+|.+++|.++.|.+|.|.+|+|.+++|.++.|.++.|.+|+|.+++|.+++
T Consensus 11 ~~~~~f~~~~l~~~~l~~~~~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~ 90 (200)
T 2xt2_A 11 YCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQ 90 (200)
T ss_dssp EESCEEESCBCTTCEEESCEEESCEEESCBCTTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSC
T ss_pred hcCCEeecCccccCccccCEEccCEEEeeeccCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccCc
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ------ccccccccceecCceeecccccccccccccccccccCCCcccCceecCccccCccccCcccCCccccCccccCC
Q 022265 210 ------LQSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDT 283 (300)
Q Consensus 210 ------~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 283 (300)
+.++.|.++.+.+++|.+++|.+++|.+|+|.+++|.+|++.+++|.+|+|.+++|.+++|.+++|+++++.++
T Consensus 91 ~~~~~~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~~ 170 (200)
T 2xt2_A 91 WPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHI 170 (200)
T ss_dssp CCSSCCTTSEEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBCTTCBSCCC
T ss_pred ccccccccceEEEcCcccccEEccCccCCCEecCCEeecccCCCCccccCCccCcccCCCCccCCccccCCcCCCCcccc
Confidence 56666666666666666666666666666665555555555555555555555555555555555555555544
Q ss_pred ccCCceecCCccC
Q 022265 284 HLEGAKLDGANLL 296 (300)
Q Consensus 284 ~~~~~~l~~~~l~ 296 (300)
++.++.|.++.+.
T Consensus 171 ~~~~~~l~ga~~~ 183 (200)
T 2xt2_A 171 DIFHNDIKRARFS 183 (200)
T ss_dssp CTTSSBCTTCEEC
T ss_pred ccccccccCcEEC
Confidence 4444444444443
No 14
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=99.96 E-value=1.4e-29 Score=207.57 Aligned_cols=163 Identities=26% Similarity=0.363 Sum_probs=101.3
Q ss_pred ceeccccccCCCCCCCcCCccccccccccceeccccccccccccccccCCccccccccccccccccccccceeccccccc
Q 022265 133 VRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRGALLAGANLQS 212 (300)
Q Consensus 133 ~~~~~~~l~~~~l~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~~~~~~ 212 (300)
..+.+..+++++|++++|++++|+++.|.+|+|.+|+|.++.|.++.|.+|+|.+|+|.++.|.+|+|.+++|.+++|.+
T Consensus 5 ~~~~~~~~~~~~f~~~~l~~~~l~~~~f~~~~f~~~~l~~a~l~~~~~~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~ 84 (186)
T 2bm5_A 5 QQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRP 84 (186)
T ss_dssp CEEESCEEESCBCTTCBCTTCEEESCEEESCBCTTCBCTTCEEESCEEESCEEESCBCTTCEEEEEECTTCEEESCBCCS
T ss_pred hhcccCeeeCCCcccCccCCCEecCCEeCCCCcCCCCCCCCEecCCCcCCcCcCCceeCCCCcCCCCcCCCcccCCeecc
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccccceecCceeecccccccccccccccccccCCCcccCceecCccccCccccCcccCCccccCccccCCccCCceecC
Q 022265 213 ANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDG 292 (300)
Q Consensus 213 ~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 292 (300)
+.|.++.+.+++|.+++|++++|.+|+|.+++|.+|+|.+++|.+|+|.+++|.+++|.+++|+++++.++++.++.|.+
T Consensus 85 ~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~~~a~l~g 164 (186)
T 2bm5_A 85 LTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVG 164 (186)
T ss_dssp CEEEEEECTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHHHHSBCTT
T ss_pred CEEeccCcCcCccCCCccCCCeeccCEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEeeccccccCeecc
Confidence 66666666666666666666666666666666666555555555555555555555555555555554444444444444
Q ss_pred Ccc
Q 022265 293 ANL 295 (300)
Q Consensus 293 ~~l 295 (300)
+.+
T Consensus 165 a~~ 167 (186)
T 2bm5_A 165 ARV 167 (186)
T ss_dssp CBC
T ss_pred cCc
Confidence 443
No 15
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=99.95 E-value=3.1e-29 Score=205.45 Aligned_cols=162 Identities=25% Similarity=0.375 Sum_probs=98.8
Q ss_pred cCceeccccccCCCCCCCcCCccccccccccceeccccccccccccccccCCccccccccccccccccccccceeccccc
Q 022265 131 EKVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRGALLAGANL 210 (300)
Q Consensus 131 ~~~~~~~~~l~~~~l~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~~~~ 210 (300)
.+..|.+++|.+++|++.+|+++.|.+|+|.+++|.+++|.++.|.+|.|.+|+|.++.|.+|++.+++|.++++.+++|
T Consensus 8 ~~~~~~~~~f~~~~l~~~~l~~~~f~~~~f~~~~l~~a~l~~~~~~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~~~f 87 (186)
T 2bm5_A 8 VDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTL 87 (186)
T ss_dssp ESCEEESCBCTTCBCTTCEEESCEEESCBCTTCBCTTCEEESCEEESCEEESCBCTTCEEEEEECTTCEEESCBCCSCEE
T ss_pred ccCeeeCCCcccCccCCCEecCCEeCCCCcCCCCCCCCEecCCCcCCcCcCCceeCCCCcCCCCcCCCcccCCeeccCEE
Confidence 44556666666666666666666666666666666666666666655555555555555555555555555555555555
Q ss_pred cccccccceecCceeecccccccccccccccccccCCCcccCceecCccccCccccCcccCCccccCccccCCccCCcee
Q 022265 211 QSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKL 290 (300)
Q Consensus 211 ~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 290 (300)
.++++.++.|.++++.+++|.++++.+++|.+|+|++++|.+++|.+++|.+++|++++|.++.+.++++.+++|.++.+
T Consensus 88 ~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~~~a~l~ga~~ 167 (186)
T 2bm5_A 88 DDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARV 167 (186)
T ss_dssp EEEECTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHHHHSBCTTCBC
T ss_pred eccCcCcCccCCCccCCCeeccCEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEeeccccccCeecccCc
Confidence 55555555555555555555555566666666666666666666666666666666666666666666666666666666
Q ss_pred cC
Q 022265 291 DG 292 (300)
Q Consensus 291 ~~ 292 (300)
+.
T Consensus 168 ~~ 169 (186)
T 2bm5_A 168 DV 169 (186)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 16
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=99.95 E-value=4.1e-28 Score=176.22 Aligned_cols=89 Identities=21% Similarity=0.353 Sum_probs=80.5
Q ss_pred CcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEEcCCCCcHHHHHHHHhc-CCCCCCChHHHHHHH
Q 022265 9 SMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFVDRDGKHFRHILNWLRD-GAVPTLTESKFLELL 87 (300)
Q Consensus 9 ~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fiDrdp~~F~~Il~~lr~-g~~~~~~~~~~~~l~ 87 (300)
++|+|||||++|+|+++||++ +|+|+|++|++. ...+.+++|+|||||||.+|++||+|||+ |+++.+++.+...++
T Consensus 1 ~~v~LNVGG~~f~t~~~TL~~-~p~s~L~~~~~~-~~~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~ 78 (100)
T 1t1d_A 1 ERVVINVSGLRFETQLKTLNQ-FPDTLLGNPQKR-NRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFS 78 (100)
T ss_dssp CEEEEEETTEEEEEEHHHHHT-STTSTTTCHHHH-GGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHH
T ss_pred CEEEEEECCEEEEeeHHHHhc-CCCccccchhcc-ccccCCCceeEEEcCChHHHHHHHHHHhcCCcccCCCCCCHHHHH
Confidence 579999999999999999995 999999999974 34566789999999999999999999999 899888888899999
Q ss_pred HHHhhhchhhHH
Q 022265 88 REAEYYQLLGLI 99 (300)
Q Consensus 88 ~Ea~f~~l~~l~ 99 (300)
+||+||+|..+.
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999998744
No 17
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=99.95 E-value=1.6e-27 Score=192.42 Aligned_cols=106 Identities=34% Similarity=0.519 Sum_probs=93.7
Q ss_pred CCCCCCcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCC--CcccCCCCcEEEcCCCCcHHHHHHHHhcCCCCCCChH
Q 022265 4 DSDSSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRH--TVFQDSEGYIFVDRDGKHFRHILNWLRDGAVPTLTES 81 (300)
Q Consensus 4 ~~~~~~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~--~~~~~~~~~~fiDrdp~~F~~Il~~lr~g~~~~~~~~ 81 (300)
++..+++|+|||||++|+|+++||++ +|+|+|++|++++. +...+++|+|||||||.+|++||+|||+|+++.+.+.
T Consensus 7 ~g~~~~~V~LNVGG~~F~Tt~sTL~r-~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~lP~~~ 85 (202)
T 3drx_A 7 PGSVSKWVRLNVGGTYFLTTRQTLCR-DPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDL 85 (202)
T ss_dssp SSCCCCEEEEEETTEEEEEETTGGGS-CTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHSCCCCCTTS
T ss_pred CCCCCCEEEEEECCEEEEEeHHHHhC-CCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcCCccCCCCCC
Confidence 56778999999999999999999995 99999999998753 3335688999999999999999999999999888888
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHhhhhcc
Q 022265 82 KFLELLREAEYYQLLGLIERIHAVINKRK 110 (300)
Q Consensus 82 ~~~~l~~Ea~f~~l~~l~~~~~~~i~~~~ 110 (300)
+...+++||+||+|.+|++.+++.+.++.
T Consensus 86 ~~~~l~eEA~FygL~~Lv~~l~~~i~ere 114 (202)
T 3drx_A 86 AEEGVLEEAEFYNITSLIKLVKDKIRERD 114 (202)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcHHHHHHHHHHHHHHh
Confidence 88889999999999999999998886543
No 18
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=99.95 E-value=6.2e-28 Score=179.97 Aligned_cols=91 Identities=24% Similarity=0.305 Sum_probs=82.0
Q ss_pred CCCcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEEcCCCCcHHHHHHHHhcCCCCCCChHHHHHH
Q 022265 7 SSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFVDRDGKHFRHILNWLRDGAVPTLTESKFLEL 86 (300)
Q Consensus 7 ~~~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fiDrdp~~F~~Il~~lr~g~~~~~~~~~~~~l 86 (300)
.+++|+|||||++|+|+++||++ +|+|+|++|+++ ...+.+++|+|||||||.+|++||+|||+|+++.+.+.+...+
T Consensus 3 ~~~~V~LNVGG~~f~T~~~TL~~-~P~s~L~~l~~~-~~~~~~~~g~~FiDRdp~~F~~ILnylR~G~l~~p~~~~~~~~ 80 (115)
T 3kvt_A 3 AENRVIINVGGIRHETYKATLKK-IPATRLSRLTEG-MLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLF 80 (115)
T ss_dssp -CCEEEEEETTEEEEEEHHHHTT-SCSSTTTTCCTT-STTEETTTTEEEECSCTTTHHHHHHHHHHSCBCCCSSSCHHHH
T ss_pred CCCEEEEEECCEEEEecHHHHhc-CCCccHHHHhcC-CCCCCCCCCcEEEecChHHHHHHHHHhcCCCCCCCCcccHHHH
Confidence 56899999999999999999995 999999999986 3456788999999999999999999999999988777788899
Q ss_pred HHHHhhhchhhHH
Q 022265 87 LREAEYYQLLGLI 99 (300)
Q Consensus 87 ~~Ea~f~~l~~l~ 99 (300)
++||+||+|....
T Consensus 81 ~~Ea~fy~i~~~~ 93 (115)
T 3kvt_A 81 EEELEFWGLDSNQ 93 (115)
T ss_dssp HHHHHHHTCCGGG
T ss_pred HHHHHHhCCChHH
Confidence 9999999998743
No 19
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=99.94 E-value=1.4e-27 Score=180.28 Aligned_cols=93 Identities=27% Similarity=0.465 Sum_probs=81.2
Q ss_pred CCCCCCcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEEcCCCCcHHHHHHHHhcCCCCCCChHHH
Q 022265 4 DSDSSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFVDRDGKHFRHILNWLRDGAVPTLTESKF 83 (300)
Q Consensus 4 ~~~~~~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fiDrdp~~F~~Il~~lr~g~~~~~~~~~~ 83 (300)
.+..+++|+|||||++|+|+++||++ +|+|+|++ +++...+.+++|+|||||||.+|++||+|||+|+++.+.+.+.
T Consensus 8 ~~~~~~~V~LNVGG~~F~t~~~TL~~-~p~S~L~~--~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~~p~~~~~ 84 (124)
T 1s1g_A 8 NKRQDELIVLNVSGRRFQTWRTTLER-YPDTLLGS--TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECI 84 (124)
T ss_dssp ----CCEEEEEETTEEEEEEHHHHTT-STTSSTTS--SGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSCBCCCTTSCH
T ss_pred CCCCCCEEEEEeCCEEEEEeHHHHhc-CCCceecc--cCCcccccCCCCcEEEcCChHHHHHHHHHHhcCCCCCCCCcCH
Confidence 45678999999999999999999995 99999998 4445567788999999999999999999999999988777889
Q ss_pred HHHHHHHhhhchhhHH
Q 022265 84 LELLREAEYYQLLGLI 99 (300)
Q Consensus 84 ~~l~~Ea~f~~l~~l~ 99 (300)
..+++||+||+|..+.
T Consensus 85 ~~l~~Ea~fy~i~~l~ 100 (124)
T 1s1g_A 85 SAYDDELAFYGILPEI 100 (124)
T ss_dssp HHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHcCCChHH
Confidence 9999999999998863
No 20
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=99.93 E-value=4e-27 Score=173.20 Aligned_cols=86 Identities=31% Similarity=0.514 Sum_probs=77.8
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEEcCCCCcHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFVDRDGKHFRHILNWLRDGAVPTLTESKFLELLRE 89 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fiDrdp~~F~~Il~~lr~g~~~~~~~~~~~~l~~E 89 (300)
+|+|||||++|+|+++||++ +|+|+|++ +++...+.+++|+|||||||.+|++||+|||+|+++.+++.+...+++|
T Consensus 1 ~V~LNVGG~~f~t~~~TL~~-~p~s~L~~--~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E 77 (105)
T 1nn7_A 1 LIVLNVSGTRFQTWQDTLER-YPDTLLGS--SERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEE 77 (105)
T ss_dssp CEEEEETTEEEEECHHHHHT-SCSSSTTS--GGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred CEEEEECCEEEEEeHHHHhc-CCCccccc--cCCcccccCCCCcEEEeCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 58999999999999999995 99999998 3344556788999999999999999999999999988877888999999
Q ss_pred HhhhchhhH
Q 022265 90 AEYYQLLGL 98 (300)
Q Consensus 90 a~f~~l~~l 98 (300)
|+||+|..+
T Consensus 78 a~fy~i~~l 86 (105)
T 1nn7_A 78 LAFFGLIPE 86 (105)
T ss_dssp HHHHTCCSC
T ss_pred HHHcCCCHH
Confidence 999999875
No 21
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=99.93 E-value=4e-27 Score=181.20 Aligned_cols=92 Identities=26% Similarity=0.456 Sum_probs=83.1
Q ss_pred CCCCCCcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEEcCCCCcHHHHHHHHhcCCCCCCChHHH
Q 022265 4 DSDSSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFVDRDGKHFRHILNWLRDGAVPTLTESKF 83 (300)
Q Consensus 4 ~~~~~~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fiDrdp~~F~~Il~~lr~g~~~~~~~~~~ 83 (300)
....+++|+|||||++|+|+++||++ +|+|+|+. +++...+.+++|+|||||||.+|++||+|||+|+++.+.+.+.
T Consensus 30 ~~~~~~~V~LNVGG~~F~T~~~TL~~-~P~S~L~~--~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~l~~p~~~~~ 106 (140)
T 2nz0_B 30 NKRQDELIVLNVSGRRFQTWRTTLER-YPDTLLGS--TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECI 106 (140)
T ss_dssp CTTCCCEEEEEETTEEEEEEHHHHHT-CTTSTTTS--GGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSSBCCCTTSCH
T ss_pred cCCCCCEEEEEECCEEEEeeHHHHhc-CCCeeecc--cCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCCcCCCCCcCH
Confidence 34578999999999999999999995 99999998 4445567789999999999999999999999999988777889
Q ss_pred HHHHHHHhhhchhhH
Q 022265 84 LELLREAEYYQLLGL 98 (300)
Q Consensus 84 ~~l~~Ea~f~~l~~l 98 (300)
..+++||+||+|..+
T Consensus 107 ~~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 107 SAYDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHcCCChH
Confidence 999999999999876
No 22
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.91 E-value=1.1e-24 Score=171.75 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=8.4
Q ss_pred eeccccccCCCCCCCcCCcc
Q 022265 134 RFRGLNLSGLDLSKLDLSLV 153 (300)
Q Consensus 134 ~~~~~~l~~~~l~~~~l~~~ 153 (300)
+|.+++|++++|++++|+++
T Consensus 14 ~~~~~~l~~~dL~~~~l~~~ 33 (150)
T 2o6w_A 14 ECVGCNLEGVNLPRENFGLK 33 (150)
T ss_dssp BCTTCBCTTCBCTTCBCSSS
T ss_pred CcCCcccCCCCCCCCCcccC
Confidence 44444444444444433333
No 23
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.91 E-value=2.9e-24 Score=169.38 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=11.3
Q ss_pred ccccccCCCCCCCcCCcccccccc
Q 022265 136 RGLNLSGLDLSKLDLSLVDFSYAC 159 (300)
Q Consensus 136 ~~~~l~~~~l~~~~l~~~~f~~~~ 159 (300)
.+.++.+++|++++|++++|++++
T Consensus 11 ~~~~~~~~~l~~~dL~~~~l~~~~ 34 (150)
T 2o6w_A 11 LERECVGCNLEGVNLPRENFGLKY 34 (150)
T ss_dssp TSSBCTTCBCTTCBCTTCBCSSSC
T ss_pred hcCCcCCcccCCCCCCCCCcccCc
Confidence 344445544444444444444443
No 24
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.89 E-value=9.4e-24 Score=197.55 Aligned_cols=93 Identities=20% Similarity=0.185 Sum_probs=42.5
Q ss_pred cchhHHHHHHHhhccCc-eeccccccCCCCCCCcCCccccccccccceeccccccccccccccccCCccccccccccccc
Q 022265 117 TELTRIDIIKCIQSEKV-RFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEF 195 (300)
Q Consensus 117 ~~l~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f 195 (300)
++++..++......... ...+.++.+++|++++|++++|++|+|.+++|.+|+|.+|+|.+|+|.+++|.++.|.+|.|
T Consensus 5 AdLs~AdLs~~~l~~~~d~~~g~~f~~~dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L 84 (613)
T 3nb2_A 5 ACLSKAELTADLIWLSANRTGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSIL 84 (613)
T ss_dssp SSSCHHHHHHHHHHHHHTCCSSCCTTTTBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEEC
T ss_pred ccCCCCCchhhhhhhhcccccCCCcCCCeeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCcc
Confidence 44555555443322222 12444555555555555555555555555555555555444444444444444444444444
Q ss_pred cccccccceecccc
Q 022265 196 AGANLRGALLAGAN 209 (300)
Q Consensus 196 ~~~~l~~~~~~~~~ 209 (300)
.+|+|.+++|.+++
T Consensus 85 ~~anL~~AnL~~A~ 98 (613)
T 3nb2_A 85 NECNFCYANLSNCI 98 (613)
T ss_dssp TTCBCTTCBCTTCE
T ss_pred CCCccCCCccccCc
Confidence 44444444444433
No 25
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.89 E-value=1.5e-23 Score=196.28 Aligned_cols=71 Identities=30% Similarity=0.439 Sum_probs=27.2
Q ss_pred eeccccccCCCCCCCcCCccccccccccceeccccccccccccccccCCccccccccccccccccccccce
Q 022265 134 RFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRGAL 204 (300)
Q Consensus 134 ~~~~~~l~~~~l~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~ 204 (300)
++.+++|++++|++++|++++|++|+|.+|+|.+|+|.+|+|.+++|.+++|.+|.|.+|+|.+++|.++.
T Consensus 28 ~f~~~dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~ 98 (613)
T 3nb2_A 28 SAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCI 98 (613)
T ss_dssp CTTTTBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCE
T ss_pred CcCCCeeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCc
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333
No 26
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.87 E-value=1.9e-23 Score=170.10 Aligned_cols=109 Identities=27% Similarity=0.394 Sum_probs=43.5
Q ss_pred cccccccccCCccccccccccccccccccccceeccccccccccccceecCceeecccccccccccccccccccCCCccc
Q 022265 172 SAKFRDVDAEGSIFHNATLRECEFAGANLRGALLAGANLQSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLE 251 (300)
Q Consensus 172 ~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~ 251 (300)
++.|.+|+|.+++|.+++|.++.|.+|+|.+++|.+++|.++.|.++.|.+++|.+++|+++.|.+++|.+|+|++|+|.
T Consensus 51 ~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~l~ 130 (184)
T 2f3l_A 51 SASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLT 130 (184)
T ss_dssp -CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCT
T ss_pred CccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCEee
Confidence 33333333333333333333333334444444444444444444444444444444444444444444444444444444
Q ss_pred CceecCccccCccccCcccCCccccCccc
Q 022265 252 GANLKGAKLRNANLKGANLQRAYLRHVNL 280 (300)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (300)
+++|.+++|.+++|.+++|.++.|.++++
T Consensus 131 ~a~l~~a~f~~a~L~gadf~~a~l~~~~l 159 (184)
T 2f3l_A 131 EAIMMRTKFDDAKITGADFSLAVLDVYEV 159 (184)
T ss_dssp TCEEEEEECTTCBCTTCBCTTCEECHHHH
T ss_pred CCEECCCEEeCCEecCCEecCCCCCcChH
Confidence 44444444444444444333333333333
No 27
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.86 E-value=4.5e-23 Score=167.85 Aligned_cols=51 Identities=29% Similarity=0.483 Sum_probs=18.6
Q ss_pred eccccccccccccccccCCccccccccccccccccccccceeccccccccc
Q 022265 164 FFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRGALLAGANLQSAN 214 (300)
Q Consensus 164 ~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~~~~~~~~ 214 (300)
+|.+|+|.+++|.+++|.+++|.+|+|.+++|.+++|.++.|.+++|.+++
T Consensus 53 ~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~ 103 (184)
T 2f3l_A 53 SYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGAD 103 (184)
T ss_dssp EEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCB
T ss_pred cccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCe
Confidence 333333333333333333333333333333333333333333333333333
No 28
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.82 E-value=3.9e-21 Score=179.87 Aligned_cols=93 Identities=26% Similarity=0.362 Sum_probs=82.3
Q ss_pred CCCCCcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEEcCCCCcHHHHHHHHhc-CCCCCCChHHH
Q 022265 5 SDSSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFVDRDGKHFRHILNWLRD-GAVPTLTESKF 83 (300)
Q Consensus 5 ~~~~~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fiDrdp~~F~~Il~~lr~-g~~~~~~~~~~ 83 (300)
+..+++|+|||||++|+|+++||++ +|+|+|+++++. ...+.+++|+|||||||.+|++||+|||+ |+++.+.+.+.
T Consensus 48 ~~~~~~v~lNVgG~~f~t~~~tL~~-~p~s~l~~~~~~-~~~~~~~~~~~f~DR~~~~F~~IL~~~r~~g~l~~p~~~~~ 125 (514)
T 2r9r_B 48 HESSERVVINISGLRFETQLKTLAQ-FPETLLGDPKKR-MRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPL 125 (514)
T ss_dssp ---CCEEEEEETTEEEEEEHHHHTT-STTSTTTCHHHH-GGGEETTTTEEEECSCHHHHHHHHHHHHHTSCCCCCTTSCH
T ss_pred CCCCCEEEEEeCCEEEEecHHHHhc-CCCCcccccccC-CcccCCCCCCEEEcCChHHHHHHHHHHhcCCccccCCcccH
Confidence 4458899999999999999999995 999999999874 45567888999999999999999999999 99988888888
Q ss_pred HHHHHHHhhhchhhHH
Q 022265 84 LELLREAEYYQLLGLI 99 (300)
Q Consensus 84 ~~l~~Ea~f~~l~~l~ 99 (300)
..+.+|++||++.++.
T Consensus 126 ~~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 126 DIFSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHhcCCCHHH
Confidence 9999999999998744
No 29
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.60 E-value=4.9e-16 Score=143.50 Aligned_cols=9 Identities=22% Similarity=0.191 Sum_probs=4.8
Q ss_pred hHHHHHHHh
Q 022265 120 TRIDIIKCI 128 (300)
Q Consensus 120 ~~~~~~~~~ 128 (300)
+..+..+.+
T Consensus 14 ~~~~~m~k~ 22 (627)
T 2qyu_A 14 SPADWAKKL 22 (627)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHh
Confidence 445555554
No 30
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=98.51 E-value=3.5e-07 Score=69.14 Aligned_cols=93 Identities=13% Similarity=0.270 Sum_probs=77.3
Q ss_pred CcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE--cCCCCcHHHHHHHHhcCCCCCCChHHHHHH
Q 022265 9 SMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV--DRDGKHFRHILNWLRDGAVPTLTESKFLEL 86 (300)
Q Consensus 9 ~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi--Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l 86 (300)
.=|+|.|||+.|.+.+..|..+ ..+|..||.+.... ....+-+ |.+|..|+.+|+|+.+|.++. .......+
T Consensus 30 ~Dv~l~v~~~~~~aHk~iLaa~--S~~F~~~f~~~~~e---~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~-~~~~~~~l 103 (127)
T 1r29_A 30 TDVVIVVSREQFRAHKTVLMAC--SGLFYSIFTDQLKR---NLSVINLDPEINPEGFNILLDFMYTSRLNL-REGNIMAV 103 (127)
T ss_dssp CCEEEEETTEEEEECHHHHHHH--CHHHHHHHTSTTTT---TCSEEECCTTSCHHHHHHHHHHHHHSCCCC-CTTTHHHH
T ss_pred CCEEEEECCEEEehHHHHHHHh--CHHHHHHhcCCccC---CCCEEEeCCCCCHHHHHHHHHHHcCCCcCc-CHHHHHHH
Confidence 3578899999999999999865 46999999875432 4567777 789999999999999999975 34567889
Q ss_pred HHHHhhhchhhHHHHHHHhhh
Q 022265 87 LREAEYYQLLGLIERIHAVIN 107 (300)
Q Consensus 87 ~~Ea~f~~l~~l~~~~~~~i~ 107 (300)
+.-|++|++..+.+.|...+.
T Consensus 104 l~~A~~~~i~~L~~~c~~~l~ 124 (127)
T 1r29_A 104 MATAMYLQMEHVVDTCRKFIK 124 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999977653
No 31
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=98.46 E-value=4.9e-07 Score=67.17 Aligned_cols=88 Identities=17% Similarity=0.355 Sum_probs=73.5
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEEc---CCCCcHHHHHHHHhcCCCCCCChHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFVD---RDGKHFRHILNWLRDGAVPTLTESKFLEL 86 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fiD---rdp~~F~~Il~~lr~g~~~~~~~~~~~~l 86 (300)
=|+|.|||+.|.+.+..|..+ ..+|..||.+. ..+.+-|+ .+|..|+.+|+|+.+|.++. .......+
T Consensus 24 Dv~l~v~~~~~~aHk~vLaa~--S~yF~~~f~~~------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~-~~~~v~~l 94 (116)
T 2vpk_A 24 DCTIVIGEFQFKAHRNVLASF--SEYFGAIYRST------SENNVFLDQSQVKADGFQKLLEFIYTGTLNL-DSWNVKEI 94 (116)
T ss_dssp CEEEEETTEEEEECHHHHHHH--CHHHHHHHTTC------CCSCEECCTTTCCHHHHHHHHHHHHHSCCCC-CTTTHHHH
T ss_pred cEEEEECCEEEeccHHHHhhc--CHHHHHHHcCC------CCCeEEeecCCCCHHHHHHHHHHHcCCCccc-CHHHHHHH
Confidence 478899999999999999865 46999999864 23456554 79999999999999999975 44567889
Q ss_pred HHHHhhhchhhHHHHHHHhh
Q 022265 87 LREAEYYQLLGLIERIHAVI 106 (300)
Q Consensus 87 ~~Ea~f~~l~~l~~~~~~~i 106 (300)
+.-|++|++..+.+.|.+.+
T Consensus 95 l~~A~~~~i~~L~~~C~~~l 114 (116)
T 2vpk_A 95 HQAADYLKVEEVVTKCKIKM 114 (116)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999987654
No 32
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=98.35 E-value=8.2e-07 Score=68.69 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=73.7
Q ss_pred CcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHHHHHH
Q 022265 9 SMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKFLELL 87 (300)
Q Consensus 9 ~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~ 87 (300)
.=|+|.|||+.|.+.|..|..+ ..+|..||.+...........+-+ |-+|..|+.+|+|+.+|.++. .......++
T Consensus 48 ~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i-~~~~v~~ll 124 (144)
T 2ppi_A 48 CDAHLVLDGEEIPVQKNILAAA--SPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRL-NEDTIQDVV 124 (144)
T ss_dssp CCEEEEETTEEEEECHHHHHHH--CHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCC-CTTTHHHHH
T ss_pred cceEEEECCEEEehHHHHHHHc--CHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCC-CHHHHHHHH
Confidence 3477899999999999999965 469999998654322233455666 678999999999999999964 445678899
Q ss_pred HHHhhhchhhHHHHHHHh
Q 022265 88 REAEYYQLLGLIERIHAV 105 (300)
Q Consensus 88 ~Ea~f~~l~~l~~~~~~~ 105 (300)
.-|++|++..+.+.|.+.
T Consensus 125 ~~A~~l~i~~L~~~C~~~ 142 (144)
T 2ppi_A 125 QAADLLLLTDLKTLCCEF 142 (144)
T ss_dssp HHHHHTTCHHHHHHHHTT
T ss_pred HHHHHhCcHHHHHHHHHH
Confidence 999999999999988653
No 33
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=98.33 E-value=1.8e-06 Score=63.28 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=72.8
Q ss_pred CcEEEeeCC----EEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHH
Q 022265 9 SMVRLNIGG----KKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKF 83 (300)
Q Consensus 9 ~~v~lnVgG----~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~ 83 (300)
.=|+|.||| +.|.+++.-|..+ ..+|..||++.+.. .. +.+-+ |-+|..|+.+|+|+.+|.++.. ....
T Consensus 9 ~Dv~l~v~~~~~~~~~~~Hk~iLa~~--S~~F~~~f~~~~~e--~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~-~~~~ 82 (109)
T 2vkp_A 9 ADVHFVVGPPGATRTVPAHKYVLAVG--SSVFYAMFYGDLAE--VK-SEIHIPDVEPAAFLILLKYMYSDEIDLE-ADTV 82 (109)
T ss_dssp CCEEEEESSTTSCEEEEECHHHHHHH--CHHHHHHHC--------C-CEEEETTSCHHHHHHHHHHHHHCCCCCC-TTTH
T ss_pred ccEEEEECCCCCcEEEEeeHHHHHHc--CHHHHHHhcCCccc--CC-CeEEeCCCCHHHHHHHHHHHcCCCccCC-HHHH
Confidence 457789998 9999999999865 45999999875421 22 56666 6799999999999999999653 3566
Q ss_pred HHHHHHHhhhchhhHHHHHHHhhh
Q 022265 84 LELLREAEYYQLLGLIERIHAVIN 107 (300)
Q Consensus 84 ~~l~~Ea~f~~l~~l~~~~~~~i~ 107 (300)
..++.-|++|++..+.+.|...+.
T Consensus 83 ~~ll~~A~~~~~~~L~~~c~~~l~ 106 (109)
T 2vkp_A 83 LATLYAAKKYIVPALAKACVNFLE 106 (109)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHH
Confidence 789999999999999999876553
No 34
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=98.29 E-value=1.4e-06 Score=64.95 Aligned_cols=88 Identities=15% Similarity=0.238 Sum_probs=72.4
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKFLELLR 88 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~~ 88 (300)
=|+|.|||+.|.+.|.-|..+ ..+|..||.+.. .+.+-+ |-+|..|+.+|+|+.+|.++. .......++.
T Consensus 26 Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~------~~~i~l~~~~~~~f~~ll~~iYtg~~~~-~~~~v~~ll~ 96 (119)
T 3b84_A 26 DATLDVGGLVFKAHWSVLACC--SHFFQSLYGDGS------GGSVVLPAGFAEIFGLLLDFFYTGHLAL-TSGNRDQVLL 96 (119)
T ss_dssp CEEEEETTEEEEECHHHHHHH--CHHHHHHHTTTT------CCCEEECGGGHHHHHHHHHHHHHSCCCC-CTTTHHHHHH
T ss_pred ceEEEECCEEEEeeHHHHhhc--CHHHHHHHCCCC------CCeEEeCCCCHHHHHHHHHHHcCCCCcc-CHHHHHHHHH
Confidence 477899999999999999865 459999998643 234444 577999999999999999975 3345778999
Q ss_pred HHhhhchhhHHHHHHHhh
Q 022265 89 EAEYYQLLGLIERIHAVI 106 (300)
Q Consensus 89 Ea~f~~l~~l~~~~~~~i 106 (300)
-|++|++..+.+.|...+
T Consensus 97 ~A~~~~i~~L~~~C~~~l 114 (119)
T 3b84_A 97 AARELRVPEAVELCQSFK 114 (119)
T ss_dssp HHHHTTCHHHHHHHHHCC
T ss_pred HHHHhCcHHHHHHHHHHH
Confidence 999999999999997654
No 35
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=98.22 E-value=3.8e-06 Score=62.39 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=68.4
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKFLELLR 88 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~~ 88 (300)
-|+|.|||+.|.+.+.-|..+ ..+|..||.+. .+.+-+ |-+|..|+.+|+|+.+|.++.........++.
T Consensus 33 Dv~l~v~~~~f~aHk~vLaa~--S~~F~~~f~~~-------~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~ 103 (116)
T 3fkc_A 33 DVTVIVEDRKFRAHKNILSAS--STYFHQLFSVA-------GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIK 103 (116)
T ss_dssp CEEEEETTEEEEECHHHHHHH--CHHHHHHTTSC-------CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHHHHHHHH
T ss_pred eEEEEECCEEEehhHHHHHHc--CHHHHHHHcCC-------CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHHHHHHHH
Confidence 467889999999999999865 45999999864 235555 68899999999999999996667788889999
Q ss_pred HHhhhchhhHH
Q 022265 89 EAEYYQLLGLI 99 (300)
Q Consensus 89 Ea~f~~l~~l~ 99 (300)
-|++|++..+.
T Consensus 104 ~A~~l~i~~L~ 114 (116)
T 3fkc_A 104 SGQLLGVKFIA 114 (116)
T ss_dssp HHHHHTCHHHH
T ss_pred HHHHhCccccC
Confidence 99999998765
No 36
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=98.22 E-value=4.3e-06 Score=62.36 Aligned_cols=93 Identities=10% Similarity=0.193 Sum_probs=72.9
Q ss_pred CcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHHHHHH
Q 022265 9 SMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKFLELL 87 (300)
Q Consensus 9 ~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~ 87 (300)
.=|+|.|||+.|.+.+.-|..+ ..+|..||++... ......+-+ |-+|..|+.+|+|+.+|.++. .......++
T Consensus 26 ~Dv~l~v~~~~~~aHk~vLaa~--S~~F~~~f~~~~~--e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~-~~~~~~~ll 100 (120)
T 2if5_A 26 CDVVILVEGREFPTHRSVLAAC--SQYFKKLFTSGAV--VDQQNVYEIDFVSAEALTALMDFAYTATLTV-STANVGDIL 100 (120)
T ss_dssp CCEEEEETTEEEEECHHHHHHH--CHHHHHHHHC-------CCSEEECCSSCHHHHHHHHHHHHHSCCCC-CGGGHHHHH
T ss_pred CCeEEEECCEEEeHHHHHHHHh--CHHHHHHhcCCcc--ccCCceEEeCCCCHHHHHHHHHHHcCCCCcc-CHHHHHHHH
Confidence 4578899999999999999865 4699999986432 122344555 468999999999999999974 456788899
Q ss_pred HHHhhhchhhHHHHHHHhh
Q 022265 88 REAEYYQLLGLIERIHAVI 106 (300)
Q Consensus 88 ~Ea~f~~l~~l~~~~~~~i 106 (300)
.-|++|++..+.+.|.+.+
T Consensus 101 ~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 101 SAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHh
Confidence 9999999999999887543
No 37
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=98.22 E-value=1.5e-06 Score=66.40 Aligned_cols=91 Identities=14% Similarity=0.227 Sum_probs=72.2
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKFLELLR 88 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~~ 88 (300)
=|+|.|||+.|.+.|..|..+ ..+|..||.+.. .+.+-+ |-+|..|+.+|+|+.+|.++. .......++.
T Consensus 27 Dv~l~v~~~~f~aHk~vLaa~--S~yF~~mf~~~~------~~~i~l~~~~~~~f~~lL~fiYtg~~~i-~~~~v~~ll~ 97 (135)
T 2yy9_A 27 DATLDVGGLVFKAHWSVLACC--SHFFQRIYGDGT------GGSVVLPAGFAEIFGLLLDFFYTGHLAL-TSGNRDQVLL 97 (135)
T ss_dssp CEEEEETTEEEEECHHHHHHH--CHHHHHTCC----------CCEEECGGGHHHHHHHHHHHHHSCCCC-CTTTHHHHHH
T ss_pred ceEEEECCEEEehHHHHHHHh--CHHHHHHHcCCC------CCeEEeCCCCHHHHHHHHHHHhCCCCCC-CHHHHHHHHH
Confidence 477889999999999999865 469999998643 234555 678999999999999999965 3456788999
Q ss_pred HHhhhchhhHHHHHHHhhhhc
Q 022265 89 EAEYYQLLGLIERIHAVINKR 109 (300)
Q Consensus 89 Ea~f~~l~~l~~~~~~~i~~~ 109 (300)
-|++|++..+.+.|.+.+.+.
T Consensus 98 ~A~~l~i~~L~~~C~~~l~~~ 118 (135)
T 2yy9_A 98 AAKELRVPEAVELCQSFQPQT 118 (135)
T ss_dssp HHHHTTCHHHHHHHHHCCC--
T ss_pred HHHHhCcHHHHHHHHHHHHHh
Confidence 999999999999998766544
No 38
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=98.21 E-value=3.6e-06 Score=62.91 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=72.8
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKFLELLR 88 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~~ 88 (300)
=|+|.|||+.|.+.+.-|..+ ..+|..||++. ..++-+ |-+|..|+.+|+|+.+|.++. +......++.
T Consensus 30 Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~-------~~~i~l~~~~~~~f~~ll~~~Ytg~~~~-~~~~~~~ll~ 99 (121)
T 1buo_A 30 DVVIMVDSQEFHAHRTVLACT--SKMFEILFHRN-------SQHYTLDFLSPKTFQQILEYAYTATLQA-KAEDLDDLLY 99 (121)
T ss_dssp CEEEEESSCEEEECHHHHHHH--CHHHHHHTTSC-------CSEEEECSSCHHHHHHHHHHHHHSCCCC-CGGGHHHHHH
T ss_pred CEEEEECCEEEehhHHHHhhc--CHHHHHHHcCC-------CcEEEeCCCCHHHHHHHHHhhcCCCcCC-CHHHHHHHHH
Confidence 477889999999999999865 46999999863 234444 578999999999999999974 4567889999
Q ss_pred HHhhhchhhHHHHHHHhhh
Q 022265 89 EAEYYQLLGLIERIHAVIN 107 (300)
Q Consensus 89 Ea~f~~l~~l~~~~~~~i~ 107 (300)
-|++|++..+.+.|...+.
T Consensus 100 ~A~~~~i~~L~~~c~~~l~ 118 (121)
T 1buo_A 100 AAEILEIEYLEEQCLKMLE 118 (121)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHH
Confidence 9999999999999876553
No 39
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=98.20 E-value=3.8e-06 Score=64.36 Aligned_cols=93 Identities=14% Similarity=0.203 Sum_probs=75.4
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE--cCCCCcHHHHHHHHhcCCCCCCChHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV--DRDGKHFRHILNWLRDGAVPTLTESKFLELL 87 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi--Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~ 87 (300)
=|+|.|||+.|.+.|.-|..+ ..+|..||.+... +...+-+ +-+|..|+.+|+|+.+|.++.. ......++
T Consensus 38 Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~~----e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~-~~~v~~ll 110 (138)
T 2z8h_A 38 DVTVLVEGQRFRAHRSVLAAC--SSYFHSRIVGQTD----AELTVTLPEEVTVKGFEPLIQFAYTAKLILS-KDNVDEVC 110 (138)
T ss_dssp CEEEEETTEEEEECHHHHHHH--CHHHHHHHTTCCC----TTEEEECCTTSCHHHHHHHHHHHHHSCCCCC-TTTHHHHH
T ss_pred CeEEEECCEEEechHHHHHHc--CHHHHHHHhcCCC----CCceEEeCCCCCHHHHHHHHHHhcCCCcccC-HHHHHHHH
Confidence 478899999999999999865 4699999986532 2345555 5788999999999999999653 45678899
Q ss_pred HHHhhhchhhHHHHHHHhhhhc
Q 022265 88 REAEYYQLLGLIERIHAVINKR 109 (300)
Q Consensus 88 ~Ea~f~~l~~l~~~~~~~i~~~ 109 (300)
.-|++|++..+.+.|.+.+.+.
T Consensus 111 ~~A~~~~i~~L~~~C~~~l~~~ 132 (138)
T 2z8h_A 111 RCVEFLSVHNIEESCFQFLKFK 132 (138)
T ss_dssp HHHHHHTCGGGHHHHHHHTTCC
T ss_pred HHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999998766543
No 40
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=98.12 E-value=7.8e-06 Score=64.85 Aligned_cols=95 Identities=19% Similarity=0.322 Sum_probs=76.9
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKFLELLR 88 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~~ 88 (300)
-|+|.|||+.|.+++..|..+ ..+|..||++... ......+-+ |-+|..|+.+|+|+.+|.++. .......++.
T Consensus 36 Dv~l~v~~~~~~~Hk~iL~~~--S~~F~~~f~~~~~--e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~-~~~~~~~ll~ 110 (172)
T 3htm_A 36 DCCLCVAGQEFQAHKAILAAR--SPVFSAMFEHEME--ESKKNRVEINDVEPEVFKEMMCFIYTGKAPN-LDKMADDLLA 110 (172)
T ss_dssp CEEEEETTEEEEECHHHHHHH--CHHHHHHHHSCCC--GGGTTEEEECSSCHHHHHHHHHHHHHSCCTT-GGGTHHHHHH
T ss_pred ceEEEECCEEEEeeHHHHHHc--CHHHHHHHccCcc--ccCCCeEEecCCCHHHHHHHHHHHhCCCCCC-cHHHHHHHHH
Confidence 478899999999999999865 4699999986432 223345555 789999999999999999964 4456778999
Q ss_pred HHhhhchhhHHHHHHHhhhhc
Q 022265 89 EAEYYQLLGLIERIHAVINKR 109 (300)
Q Consensus 89 Ea~f~~l~~l~~~~~~~i~~~ 109 (300)
-|++|++..+.+.+...+.+.
T Consensus 111 ~A~~~~~~~l~~~c~~~l~~~ 131 (172)
T 3htm_A 111 AADKYALERLKVMCEDALCSN 131 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHHh
Confidence 999999999999988777544
No 41
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=98.06 E-value=1e-06 Score=66.72 Aligned_cols=88 Identities=16% Similarity=0.255 Sum_probs=69.8
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE--cCCCCcHHHHHHHHhcCCCCCCChHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV--DRDGKHFRHILNWLRDGAVPTLTESKFLELL 87 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi--Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~ 87 (300)
=|+|.|||+.|.+.+..|..+ ..+|..||.+. ....+.+ |-+|..|+.+|+|+.+|.++. .......++
T Consensus 35 Dv~l~v~~~~~~~Hk~vLaa~--S~~F~~~f~~~------~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i-~~~~~~~ll 105 (129)
T 3ga1_A 35 DVSVVVKGHAFKAHRAVLAAS--SSYFRDLFNNS------RSAVVELPAAVQPQSFQQILSFCYTGRLSM-NVGDQDLLM 105 (129)
T ss_dssp CEEEEETTEEEEECHHHHHHH--BHHHHHHHHHC------CCSEEECCTTCCHHHHHHHHHHHHHSEEEC-CTTTHHHHH
T ss_pred ceEEEECCEEEEehHHHHHHc--CHHHHHHHcCC------CCCEEEECCCCCHHHHHHHHHHHhCCcccc-CHHHHHHHH
Confidence 377889999999999999965 56999999864 4467777 689999999999999999865 334577899
Q ss_pred HHHhhhchhhHHHHHHHhh
Q 022265 88 REAEYYQLLGLIERIHAVI 106 (300)
Q Consensus 88 ~Ea~f~~l~~l~~~~~~~i 106 (300)
.-|++|++..+.+.|.+.+
T Consensus 106 ~~A~~~~i~~l~~~C~~~L 124 (129)
T 3ga1_A 106 YTAGFLQIQEIMEKGTEFF 124 (129)
T ss_dssp HHHHHTTBTTSSCC-----
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 9999999998887776543
No 42
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=98.06 E-value=4.1e-06 Score=64.50 Aligned_cols=93 Identities=19% Similarity=0.328 Sum_probs=73.6
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKFLELLR 88 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~~ 88 (300)
-|+|.|||+.|.+++..|..+ ..+|..||++... ....+.+-+ |-+|..|+.+|+|+.+|.++. .......++.
T Consensus 27 Dv~l~v~~~~~~~Hk~iL~~~--S~~F~~~f~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~-~~~~~~~ll~ 101 (145)
T 4eoz_A 27 DCCLCVAGQEFQAHKAILAAR--SPVFSAMFEHEME--ESKKNRVEINDVEPEVFKEMMCFIYTGKAPN-LDKMADDLLA 101 (145)
T ss_dssp CEEEEETTEEEEECHHHHHHH--CHHHHHHHHSSSH--HHHHTEEEECSSCHHHHHHHHHHHHHSCCTT-GGGTHHHHHH
T ss_pred ceEEEECCEEEEeehHHHHHc--CHHHHHHHcCCCc--CCCCceEEecCCCHHHHHHHHHhhccCccCC-cHHHHHHHHH
Confidence 478889999999999999865 4699999986432 112245555 789999999999999999974 4456778999
Q ss_pred HHhhhchhhHHHHHHHhhh
Q 022265 89 EAEYYQLLGLIERIHAVIN 107 (300)
Q Consensus 89 Ea~f~~l~~l~~~~~~~i~ 107 (300)
-|++|++..+.+.+...+.
T Consensus 102 ~A~~~~~~~l~~~c~~~l~ 120 (145)
T 4eoz_A 102 AADKYALERLKVMCEDALC 120 (145)
T ss_dssp HHHHTTCHHHHHHHHCC--
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 9999999999999876554
No 43
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=98.04 E-value=9.7e-06 Score=60.36 Aligned_cols=87 Identities=13% Similarity=0.245 Sum_probs=69.8
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKFLELLR 88 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~~ 88 (300)
=|+|.|||+.|.+.|.-|..+ ..+|..||++..+ .+-+ +-+|..|+.+|+|+.+|.++.. ......++.
T Consensus 29 Dv~l~v~~~~~~aHk~vLaa~--S~yF~~~f~~~~~-------~i~l~~~~~~~f~~ll~~~Ytg~~~i~-~~~~~~ll~ 98 (119)
T 2q81_A 29 DCTFVVDGVHFKAHKAVLAAC--SEYFKMLFVDQKD-------VVHLDISNAAGLGQVLEFMYTAKLSLS-PENVDDVLA 98 (119)
T ss_dssp CEEEEETTEEEEECHHHHHHH--CHHHHHHHHHCCS-------GGGGGGCCHHHHHHHHHHHHHSCCCCC-TTTHHHHHH
T ss_pred ceEEEECCEEEehhHHHHHHc--CHHHHHHHcCCCC-------EEEeCCCCHHHHHHHHHHHcCCCCccC-HHHHHHHHH
Confidence 477889999999999999865 4599999986322 2222 3478999999999999999653 346788999
Q ss_pred HHhhhchhhHHHHHHHhh
Q 022265 89 EAEYYQLLGLIERIHAVI 106 (300)
Q Consensus 89 Ea~f~~l~~l~~~~~~~i 106 (300)
-|++|++..+.+.|.+.+
T Consensus 99 ~A~~l~i~~L~~~C~~~l 116 (119)
T 2q81_A 99 VATFLQMQDIITACHALK 116 (119)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 999999999999987644
No 44
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=97.99 E-value=1.3e-05 Score=67.89 Aligned_cols=98 Identities=13% Similarity=0.141 Sum_probs=72.6
Q ss_pred CcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHHHHHH
Q 022265 9 SMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKFLELL 87 (300)
Q Consensus 9 ~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~ 87 (300)
.=|+|.|||+.|.++|.-|..+ ..+|..||++...........+-+ |-+|..|+.+|+|+++|.++. .......++
T Consensus 32 ~Dv~l~v~~~~f~~Hr~vLaa~--S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i-~~~~v~~ll 108 (256)
T 3hve_A 32 CDAHLVLDGEEIPVQKNILAAA--SPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRL-NEDTIQDVV 108 (256)
T ss_dssp CCEEEEETTEEEEECHHHHHTT--CHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCC-C-CCHHHHH
T ss_pred cceEEEECCEEEechHHHHHHc--CHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcc-cHhHHHHHH
Confidence 3578899999999999999865 469999998644322223345555 679999999999999999964 345678899
Q ss_pred HHHhhhchhhHHHHHHHhhhhc
Q 022265 88 REAEYYQLLGLIERIHAVINKR 109 (300)
Q Consensus 88 ~Ea~f~~l~~l~~~~~~~i~~~ 109 (300)
.-|.+|++..+.+.+...+...
T Consensus 109 ~~A~~l~i~~l~~~c~~~L~~~ 130 (256)
T 3hve_A 109 QAADLLLLTDLKTLCCEFLEGC 130 (256)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHChHHHHHHHHHHHHhh
Confidence 9999999999999888776544
No 45
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=97.90 E-value=2.4e-06 Score=64.18 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=69.6
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE--cCCCCcHHHHHHHHhcCCCCCCChHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV--DRDGKHFRHILNWLRDGAVPTLTESKFLELL 87 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi--Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~ 87 (300)
=|+|.|||+.|.+.|..|..+ ..+|..||.+... +...+-+ +-+|..|+.+|+|+.+|.++. .......++
T Consensus 31 Dv~l~v~~~~~~aHk~vLaa~--S~yF~~mf~~~~~----e~~~i~l~~~v~~~~f~~lL~~iYtg~~~i-~~~~v~~ll 103 (124)
T 2ihc_A 31 DVTIFVEGQRFRAHRSVLAAC--SSYFHSRIVGQAD----GELNITLPEEVTVKGFEPLIQFAYTAKLIL-SKENVDEVC 103 (124)
T ss_dssp CEEEEETTEEEEECHHHHHHH--BHHHHHHHTTC-------CEEEECCTTSCHHHHHHHHHHHHHSEEEE-ETTTHHHHH
T ss_pred CEEEEECCEEEecHHHHHHHc--CHHHHHHHcCCCC----CCceEeecCCcCHHHHHHHHHHhcCCCccc-CHHHHHHHH
Confidence 477899999999999999865 4699999986432 2245555 578899999999999999854 234578899
Q ss_pred HHHhhhchhhHHHHHHH
Q 022265 88 REAEYYQLLGLIERIHA 104 (300)
Q Consensus 88 ~Ea~f~~l~~l~~~~~~ 104 (300)
.-|++|++..+.+.|.+
T Consensus 104 ~~A~~~~~~~L~~~C~~ 120 (124)
T 2ihc_A 104 KCVEFLSVHNIEESCFQ 120 (124)
T ss_dssp HHHHHHTBSSCCGGGGG
T ss_pred HHHHHHCCHHHHHHHHH
Confidence 99999999988877754
No 46
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=97.80 E-value=4.6e-06 Score=62.66 Aligned_cols=86 Identities=15% Similarity=0.236 Sum_probs=68.7
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-c-CCCCcHHHHHHHHhcCCCCCCChHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-D-RDGKHFRHILNWLRDGAVPTLTESKFLELL 87 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-D-rdp~~F~~Il~~lr~g~~~~~~~~~~~~l~ 87 (300)
=|+|.|||+.|.+.|..|..+ ..+|..||.+... +...+-+ | -+|..|+.+|+|+.+|.++. .......++
T Consensus 34 Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~~----e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~-~~~~v~~ll 106 (125)
T 3ohu_A 34 DVTLIVERKEFRAHRAVLAAC--SEYFWQALVGQTK----NDLVVSLPEEVTARGFGPLLQFAYTAKLLL-SRENIREVI 106 (125)
T ss_dssp CEEEEETTEEEEECHHHHHHH--BHHHHHHHTTCCC----SSCEEECCTTCCHHHHHHHHHHHTTSEEEE-CTTTHHHHH
T ss_pred ceEEEECCEEEechHHHHHHc--CHHHHHHhcCCCC----CCcEEEeCCCCCHHHHHHHHHhHcCCceEE-CHHHHHHHH
Confidence 377889999999999999965 4699999986532 2455666 4 68999999999999999854 334677899
Q ss_pred HHHhhhchhhHHHHH
Q 022265 88 REAEYYQLLGLIERI 102 (300)
Q Consensus 88 ~Ea~f~~l~~l~~~~ 102 (300)
.-|++|++..+.+.|
T Consensus 107 ~~A~~l~i~~L~~~C 121 (125)
T 3ohu_A 107 RCAEFLRMHNLEDSC 121 (125)
T ss_dssp HHHHHHTBSSCTTSS
T ss_pred HHHHHhCCHHHHHHH
Confidence 999999998776655
No 47
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=97.71 E-value=6.9e-05 Score=65.36 Aligned_cols=96 Identities=19% Similarity=0.324 Sum_probs=76.3
Q ss_pred CcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHHHHHH
Q 022265 9 SMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKFLELL 87 (300)
Q Consensus 9 ~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~ 87 (300)
.-|+|.|||+.|.+++..|..+ ..+|..||.+... .....++-+ |-+|..|+.+|+|+.+|.++. .......++
T Consensus 175 ~Dv~l~v~~~~f~~Hk~vLaa~--S~~F~~~f~~~~~--e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~-~~~~~~~ll 249 (312)
T 3hqi_A 175 TDCCLCVAGQEFQAHKAILAAR--SPVFSAMFEHEME--ESKKNRVEINDVEPEVFKEMMCFIYTGKAPN-LDKMADDLL 249 (312)
T ss_dssp CCEEEEETTEEEEECHHHHHHH--CHHHHHHTTC-------CCSEEEECSSCHHHHHHHHHHHHHSCCTT-HHHHHHHHH
T ss_pred CceEEEECCEEEeHHHHHHHHc--CHHHHHHhccCcc--ccCCceEEecCCCHHHHHHHHHhhcCCCCCC-hHHHHHHHH
Confidence 3588999999999999999865 4699999986432 223355666 789999999999999999875 345678899
Q ss_pred HHHhhhchhhHHHHHHHhhhhc
Q 022265 88 REAEYYQLLGLIERIHAVINKR 109 (300)
Q Consensus 88 ~Ea~f~~l~~l~~~~~~~i~~~ 109 (300)
.-|++|++..+.+.|...+.+.
T Consensus 250 ~~A~~~~~~~l~~~c~~~l~~~ 271 (312)
T 3hqi_A 250 AAADKYALERLKVMCEDALCSN 271 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhCHHHHHHHHHHHHHcc
Confidence 9999999999999998877544
No 48
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=97.62 E-value=6.1e-05 Score=56.02 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=65.0
Q ss_pred cEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCCCCCChHHHHHHHH
Q 022265 10 MVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAVPTLTESKFLELLR 88 (300)
Q Consensus 10 ~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~~~~~~~~~~~l~~ 88 (300)
=|+|.|||+.|.+.|--|..+. .+|.. ....+-+ |-+|..|+.+|+|+.+|.+.. .......++.
T Consensus 32 Dv~l~v~~~~f~aHk~vLaa~S--~yF~~-----------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i-~~~~v~~ll~ 97 (119)
T 3m5b_A 32 DTLITVGSQEFPAHSLVLAGVS--QQLGR-----------RGQWALGEGISPSTFAQLLNFVYGESVEL-QPGELRPLQE 97 (119)
T ss_dssp CEEEEETTEEEEECHHHHHTTC--GGGCC-----------CEEEECCSSCCHHHHHHHHHHHTTCCEEE-CGGGHHHHHH
T ss_pred ceEEEECCEEEeeEHHHHHHcC--HHHhc-----------CCCEEEeCCCCHHHHHHHHHHHcCCCcCc-CHHHHHHHHH
Confidence 4778999999999999998642 34432 1123333 578999999999999999854 4566788999
Q ss_pred HHhhhchhhHHHHHHHhhh
Q 022265 89 EAEYYQLLGLIERIHAVIN 107 (300)
Q Consensus 89 Ea~f~~l~~l~~~~~~~i~ 107 (300)
-|++|++..+.+.|.+.+.
T Consensus 98 aA~~l~i~~l~~~C~~~~~ 116 (119)
T 3m5b_A 98 AARALGVQSLEEACWRARG 116 (119)
T ss_dssp HHHHTTCHHHHHHHHHHC-
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 9999999999999976543
No 49
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=97.40 E-value=7.6e-05 Score=64.07 Aligned_cols=95 Identities=17% Similarity=0.365 Sum_probs=72.0
Q ss_pred cEEEeeC---CEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-------cCCCCcHHHHHHHHhcCCCCCCC
Q 022265 10 MVRLNIG---GKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-------DRDGKHFRHILNWLRDGAVPTLT 79 (300)
Q Consensus 10 ~v~lnVg---G~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-------Drdp~~F~~Il~~lr~g~~~~~~ 79 (300)
=|+|.|| |+.|.+.|.-|..+ ..+|..||++... ....+.+-+ +-+|..|+.+|+|+.+|.++. .
T Consensus 34 Dv~l~v~~~~~~~f~~Hr~vLaa~--S~yF~~mf~~~~~--e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i-~ 108 (279)
T 3i3n_A 34 DITLCFGGAGGREFRAHRSVLAAA--TEYFTPLLSGQFS--ESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRV-S 108 (279)
T ss_dssp CEEEECC----CEEEECHHHHHHH--CTTSGGGCCC----------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEE-E
T ss_pred CeEEEEcCCCCeEEehHHHHHHHc--CHHHHHHhcCCCc--cccCCeEEeccccccCCCCHHHHHHHHHhhCcCCccc-C
Confidence 4788998 99999999999965 3599999986432 223456666 678999999999999999854 2
Q ss_pred hHHHHHHHHHHhhhchhhHHHHHHHhhhhc
Q 022265 80 ESKFLELLREAEYYQLLGLIERIHAVINKR 109 (300)
Q Consensus 80 ~~~~~~l~~Ea~f~~l~~l~~~~~~~i~~~ 109 (300)
......++.-|.+|++..+.+.|...+.+.
T Consensus 109 ~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~ 138 (279)
T 3i3n_A 109 TGSVHEVLELADRFLLIRLKEFCGEFLKKK 138 (279)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHc
Confidence 345778999999999999999888777554
No 50
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=94.68 E-value=0.18 Score=38.98 Aligned_cols=93 Identities=13% Similarity=0.345 Sum_probs=65.8
Q ss_pred EEEe-eCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCC-C-----------
Q 022265 11 VRLN-IGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAV-P----------- 76 (300)
Q Consensus 11 v~ln-VgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~-~----------- 76 (300)
|+|. .+|+.|.+.+.... . ..++..|+.........+.+++-+ +-++.+++.|++|..++.- +
T Consensus 3 v~L~ssDg~~f~v~~~vA~-~--S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEIAK-Q--SVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHHHH-T--CHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHHHH-H--hHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 6775 47999999999854 2 469999998521110123345666 7899999999999999772 1
Q ss_pred -------------CCChHHHHHHHHHHhhhchhhHHHHHHHhh
Q 022265 77 -------------TLTESKFLELLREAEYYQLLGLIERIHAVI 106 (300)
Q Consensus 77 -------------~~~~~~~~~l~~Ea~f~~l~~l~~~~~~~i 106 (300)
..+......++..|.|.++.+|.+.+-..+
T Consensus 80 ~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~v 122 (159)
T 2ast_A 80 RTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122 (159)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 134456778999999999999998765544
No 51
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=89.47 E-value=1.4 Score=33.06 Aligned_cols=87 Identities=14% Similarity=0.373 Sum_probs=63.1
Q ss_pred EEEee-CCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCC-C-----------
Q 022265 11 VRLNI-GGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAV-P----------- 76 (300)
Q Consensus 11 v~lnV-gG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~-~----------- 76 (300)
|+|-- .|..|.+.+.... . ..++..|+.... ++++=+ +-++.+.+.|++|..+.+- +
T Consensus 4 v~L~SsDg~~f~v~~~vA~-~--S~~ik~ml~~~~------~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~ 74 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEIAK-Q--SVTIKTMLEDLG------MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEK 74 (141)
T ss_dssp EEEECTTSCEEEEEGGGGG-T--CHHHHHHHHHTC------CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------
T ss_pred EEEEeCCCCEEEecHHHHH-H--hHHHHHHHHhcC------CCceecCCcCHHHHHHHHHHHHHhccCCCcccccccccc
Confidence 55655 8999999999854 2 468899987521 344555 7889999999999998552 1
Q ss_pred -------------CCChHHHHHHHHHHhhhchhhHHHHHHHhh
Q 022265 77 -------------TLTESKFLELLREAEYYQLLGLIERIHAVI 106 (300)
Q Consensus 77 -------------~~~~~~~~~l~~Ea~f~~l~~l~~~~~~~i 106 (300)
..+....-+++..|.|.++.+|.+.+-..+
T Consensus 75 ~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~v 117 (141)
T 1fs1_B 75 RTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 117 (141)
T ss_dssp ------HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 123445667888999999999988655444
No 52
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=88.97 E-value=1.3 Score=30.93 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=50.4
Q ss_pred eCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHh-----c---CCCC--CCChHHH
Q 022265 15 IGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLR-----D---GAVP--TLTESKF 83 (300)
Q Consensus 15 VgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr-----~---g~~~--~~~~~~~ 83 (300)
.+|..|.+.+.. +.. ..+++.|+.+........++++-+ .-++.+.+.|++|.. . +.++ ..+....
T Consensus 9 sDg~~F~v~r~v-A~~--S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l 85 (97)
T 4ajy_C 9 SDGHEFIVKREH-ALT--SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIA 85 (97)
T ss_dssp TTCCEEEEEHHH-HTT--SHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGH
T ss_pred cCCcEEEecHHH-HHH--hHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHH
Confidence 479999999998 533 468899998632222233456665 688999999999998 3 4554 1344556
Q ss_pred HHHHHHHhhhc
Q 022265 84 LELLREAEYYQ 94 (300)
Q Consensus 84 ~~l~~Ea~f~~ 94 (300)
.+|+..|.|.+
T Consensus 86 ~eLl~AAnyL~ 96 (97)
T 4ajy_C 86 LELLMAANFLD 96 (97)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhhhC
Confidence 67777777753
No 53
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=73.99 E-value=19 Score=27.76 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=62.3
Q ss_pred CCcEEEe-eCCEEEEEehhhhhcCCCCchHHHHhcCCCCc-c-cCCCCcEEE-cCCCCcHHHHHHHHhcCCC-CC-----
Q 022265 8 SSMVRLN-IGGKKFYTTIDTLTRREPESMLAAMFSGRHTV-F-QDSEGYIFV-DRDGKHFRHILNWLRDGAV-PT----- 77 (300)
Q Consensus 8 ~~~v~ln-VgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~-~-~~~~~~~fi-Drdp~~F~~Il~~lr~g~~-~~----- 77 (300)
...|+|- -.|..|.+.+..... ...+..|+...... . .++.+++=+ +-++.+.+.|++|..+.+- +.
T Consensus 6 ~~~i~L~SsDG~~F~V~~~vA~~---S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~ 82 (169)
T 3v7d_A 6 TSNVVLVSGEGERFTVDKKIAER---SLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDD 82 (169)
T ss_dssp CCEEEEECTTCCEEEEEHHHHTT---SHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC---
T ss_pred CCeEEEEeCCCCEEEecHHHHHH---hHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccc
Confidence 3566664 459999999998653 46888898753221 0 122256655 7889999999999987543 11
Q ss_pred ------------------CChHHHHHHHHHHhhhchhhHHHHHHH
Q 022265 78 ------------------LTESKFLELLREAEYYQLLGLIERIHA 104 (300)
Q Consensus 78 ------------------~~~~~~~~l~~Ea~f~~l~~l~~~~~~ 104 (300)
.+...+-+|+..|.|..+.+|+...-.
T Consensus 83 ~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~ 127 (169)
T 3v7d_A 83 DDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCK 127 (169)
T ss_dssp -----CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 122345678889999999998876443
No 54
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=69.81 E-value=1.2 Score=34.37 Aligned_cols=90 Identities=12% Similarity=0.254 Sum_probs=38.5
Q ss_pred CcEEEee-CCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhcCCC-C---------
Q 022265 9 SMVRLNI-GGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRDGAV-P--------- 76 (300)
Q Consensus 9 ~~v~lnV-gG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~g~~-~--------- 76 (300)
..|+|-- .|..|.+.+..... ..++..|+.... .++++=+ +-++.+++.|++|..+.+- +
T Consensus 4 ~~v~L~SsDg~~f~v~~~vA~~---S~~ik~ml~~~~-----~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~ 75 (160)
T 2p1m_A 4 KKIVLKSSDGESFEVEEAVALE---SQTIAHMVEDDC-----VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEG 75 (160)
T ss_dssp ----CCC---------CHHHHT---CTTTC-----------------CCTTSCHHHHHHHHHC-----------------
T ss_pred CEEEEEcCCCCEEEECHHHHHH---hHHHHHHHHccC-----CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccc
Confidence 4577775 79999999998543 357788886421 1234434 6788899999999998653 1
Q ss_pred ----------------CCChHHHHHHHHHHhhhchhhHHHHHHHhh
Q 022265 77 ----------------TLTESKFLELLREAEYYQLLGLIERIHAVI 106 (300)
Q Consensus 77 ----------------~~~~~~~~~l~~Ea~f~~l~~l~~~~~~~i 106 (300)
..+....-+++..|.|..+.+|...+-..+
T Consensus 76 ~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~v 121 (160)
T 2p1m_A 76 AATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121 (160)
T ss_dssp -------------------------CHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 012223446778899999999988655444
No 55
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=66.22 E-value=13 Score=26.60 Aligned_cols=65 Identities=12% Similarity=0.197 Sum_probs=41.9
Q ss_pred CCCCCcEEEe-eCCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhc
Q 022265 5 SDSSSMVRLN-IGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRD 72 (300)
Q Consensus 5 ~~~~~~v~ln-VgG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~ 72 (300)
.++...|+|- -.|..|.+.+..... ...++.|+.........+++++=+ .-++.+.+.|++|..+
T Consensus 13 ~~~~~~v~L~SsDG~~F~V~~~~A~~---S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~ 79 (112)
T 1vcb_B 13 GPDAMYVKLISSDGHEFIVKREHALT---SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTY 79 (112)
T ss_dssp ----CEEEEECTTSCEEEEEHHHHHT---SHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCEEEECHHHHHH---hHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHH
Confidence 4456678887 899999999997653 468888987532111222345555 6788899999999876
No 56
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=57.98 E-value=27 Score=24.10 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=42.3
Q ss_pred CCcEEEee-CCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhc
Q 022265 8 SSMVRLNI-GGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRD 72 (300)
Q Consensus 8 ~~~v~lnV-gG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~ 72 (300)
+..|+|-- .|..|.+.+..... ...++.|+... . .++.+++=+ .-++.+.+.|++|..+
T Consensus 3 ~~~v~L~SsDg~~f~V~~~vA~~---S~~ik~ml~~~--~-e~~~~~Iplp~V~~~iL~kVieyc~~ 63 (99)
T 1hv2_A 3 QDFVTLVSKDDKEYEISRSAAMI---SPTLKAMIEGP--F-RESKGRIELKQFDSHILEKAVEYLNY 63 (99)
T ss_dssp CSEEEEEETTTEEEEEEHHHHTT---CHHHHHHHHSS--T-TTCTTEEEETTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCEEEECHHHHHH---hHHHHHHHhcc--c-ccCCCceecCCcCHHHHHHHHHHHHH
Confidence 34677776 99999999997543 46888999862 1 333355655 6778888888888876
No 57
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=51.17 E-value=21 Score=24.53 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=36.9
Q ss_pred EEEee-CCEEEEEehhhhhcCCCCchHHHHhcCCCCcccCCCCcEEE-cCCCCcHHHHHHHHhc
Q 022265 11 VRLNI-GGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSEGYIFV-DRDGKHFRHILNWLRD 72 (300)
Q Consensus 11 v~lnV-gG~~f~~~~~tl~~~~p~s~l~~~~~~~~~~~~~~~~~~fi-Drdp~~F~~Il~~lr~ 72 (300)
|+|-- .|..|.+.+..... ...++.|+.........+.+++=+ .-++.+.+.|++|..+
T Consensus 3 v~L~SsDg~~f~V~~~~A~~---S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~ 63 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREHALT---SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTY 63 (96)
T ss_dssp EEEECTTSCEEEEEHHHHTT---SHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEeCHHHHHH---hHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHH
Confidence 45554 89999999997543 468889998532111222345544 5677788888888765
Done!