BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022266
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14595|CTDS2_HUMAN Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 OS=Homo sapiens GN=CTDSP2 PE=1 SV=2
Length = 271
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 104/194 (53%), Gaps = 22/194 (11%)
Query: 87 VSEERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPK 146
V+EE ++ VV+DLDETLV +S P+ N A E EG
Sbjct: 94 VTEEDQGRICVVIDLDETLV---HSSFKPI---NNAD-----------FIVPIEIEGT-- 134
Query: 147 INHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS 206
+ V V +RP + EFL+++ E + +LFTA L YA P+ D +D +F RL+R S
Sbjct: 135 THQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVF 194
Query: 207 TEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPL 266
+ +VKDLS L +DL +TLI+DN+P S++ P N +P + D +LLN L+P+
Sbjct: 195 HQ-GCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMA-DTELLN-LIPI 251
Query: 267 LKHLSLQKDVRPEL 280
+ LS +DV L
Sbjct: 252 FEELSGAEDVYTSL 265
>sp|Q29I63|CNEP1_DROPS CTD nuclear envelope phosphatase 1 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=l(1)G0269 PE=3 SV=1
Length = 243
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 22/206 (10%)
Query: 87 VSEERL---QKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEG 143
VS RL Q+ T+VLDLDETL+ ++ +++P RN F ++ ++ D+
Sbjct: 50 VSRHRLSLVQRKTLVLDLDETLIHSHH-NAMP---RNTVKPGTPHDFTVK-VTIDR---- 100
Query: 144 KPKINHVTVF--ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLY 200
N V F +RP + FL +S++ DL++FTA +E Y + D++D G N+ R Y
Sbjct: 101 ----NPVRFFVHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNILRRRYY 156
Query: 201 RPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLL 260
R T +Y + KDLS + DL R I+DN+P ++ P N IP I P D LL
Sbjct: 157 RQHCTP-DYGSYTKDLSAICSDLNRIFIIDNSPGAYRCFPNNAIP-IKSWFSDPMDTALL 214
Query: 261 NVLLPLLKHLSLQKDVRPELYERFHM 286
+ LLP+L L DVR L H+
Sbjct: 215 S-LLPMLDALRFTNDVRSVLSRNLHL 239
>sp|Q9VRG7|CNEP1_DROME CTD nuclear envelope phosphatase 1 homolog OS=Drosophila
melanogaster GN=l(1)G0269 PE=2 SV=1
Length = 243
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 22/206 (10%)
Query: 87 VSEERL---QKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEG 143
VS RL Q+ T+VLDLDETL+ ++ +++P RN F ++ ++ D+
Sbjct: 50 VSRHRLSLVQRKTLVLDLDETLIHSHH-NAMP---RNTVKPGTPHDFTVK-VTIDR---- 100
Query: 144 KPKINHVTVF--ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLY 200
N V F +RP + FL +S++ DL++FTA +E Y + D++D G N+ R Y
Sbjct: 101 ----NPVRFFVHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNILRRRYY 156
Query: 201 RPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLL 260
R T +Y + KDLS + DL R I+DN+P ++ P N IP I P D LL
Sbjct: 157 RQHCTP-DYGSYTKDLSAICSDLNRIFIIDNSPGAYRCFPNNAIP-IKSWFSDPMDTALL 214
Query: 261 NVLLPLLKHLSLQKDVRPELYERFHM 286
+ LLP+L L DVR L H+
Sbjct: 215 S-LLPMLDALRFTNDVRSVLSRNLHL 239
>sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum
GN=ctdspl2 PE=3 SV=1
Length = 567
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 34/199 (17%)
Query: 94 KLTVVLDLDETLV-CAYETS-----SLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKI 147
K+++VLDLDETLV C+ E + PV N K
Sbjct: 390 KISLVLDLDETLVHCSTEPLEQPHLTFPVFFNNTEYQVFAK------------------- 430
Query: 148 NHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTST 207
+RP EFL ++S+ ++I+FTA E YA L++ ID N RLYR S
Sbjct: 431 ------KRPFFEEFLHKVSDIFEVIIFTASQEVYANKLLNMIDPNNKIKYRLYRDSCVYV 484
Query: 208 EYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLL 267
+ ++KDLS L +DL + +I+DN+P SF Q NGIP + + +D +LL L+P L
Sbjct: 485 DGN-YLKDLSVLGRDLKQVVIIDNSPQSFGFQVDNGIPIESWFEDE-NDKELLQ-LVPFL 541
Query: 268 KHLSLQKDVRPELYERFHM 286
+ L+ +DVRP + ++F +
Sbjct: 542 ESLTNVEDVRPHIRDKFKL 560
>sp|Q07949|PSR2_YEAST Probable phosphatase PSR2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSR2 PE=1 SV=1
Length = 397
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 105/189 (55%), Gaps = 34/189 (17%)
Query: 89 EERLQKLTVVLDLDETLVCA---YETSS---LPVTLRNQATGAGLKWFEMECLSSDKECE 142
+E QK ++LDLDETLV + Y S+ LPV + +Q
Sbjct: 222 QEFQQKKCLILDLDETLVHSSFKYMHSADFVLPVEIDDQ--------------------- 260
Query: 143 GKPKINHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRP 202
+++V V +RPG+ EFL ++S+ ++++FTA + YA PL+D +D RL+R
Sbjct: 261 ----VHNVYVIKRPGVDEFLNRVSQLYEVVVFTASVSRYANPLLDTLDPNGTIHHRLFRE 316
Query: 203 STTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNV 262
+ + E ++K+LS + + L T+I+DN+P S++ P + +P + + HDN+LL++
Sbjct: 317 ACYNYE-GNYIKNLSQIGRPLSETIILDNSPASYIFHPQHAVPISSWFSDT-HDNELLDI 374
Query: 263 LLPLLKHLS 271
+PLL+ LS
Sbjct: 375 -IPLLEDLS 382
>sp|Q09695|YA22_SCHPO Uncharacterized protein C2F7.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2F7.02c PE=1 SV=1
Length = 325
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 104/191 (54%), Gaps = 24/191 (12%)
Query: 87 VSEERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPK 146
+++E K ++LDLDETLV + K+ E E +G
Sbjct: 150 IAKEDEGKKCLILDLDETLV-----------------HSSFKYIEPADFVVSIEIDG--- 189
Query: 147 INH-VTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTT 205
+ H V V +RPG+ EFLK++ + ++++FTA L YA P++D +D ++ RL+R +
Sbjct: 190 LQHDVRVVKRPGVDEFLKKMGDMFEIVVFTASLAKYADPVLDMLDHSHVIRHRLFREACC 249
Query: 206 STEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLP 265
+ E VKDLS L ++L ++I+DN+P S++ P + +P + HD +L++ L+P
Sbjct: 250 NYE-GNFVKDLSQLGRNLEDSIIIDNSPSSYIFHPSHAVPISSWFNDM-HDMELID-LIP 306
Query: 266 LLKHLSLQKDV 276
L+HL+ DV
Sbjct: 307 FLEHLARVPDV 317
>sp|Q8BX07|CTDS2_MOUSE Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 OS=Mus musculus GN=Ctdsp2 PE=2 SV=1
Length = 270
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 87 VSEERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPK 146
V+E+ ++ VV+DLDETLV +S P+ N A E EG
Sbjct: 93 VTEQDQGRICVVIDLDETLV---HSSFKPI---NNAD-----------FIVPVEIEGT-- 133
Query: 147 INHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS 206
+ V V +RP + EFL+++ E + +LFTA L YA P+ D +D +F RL+R +
Sbjct: 134 THQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFREACVF 193
Query: 207 TEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPL 266
+ +VKDLS L +DL +T+I+DN+P S++ P N +P + D +LLN L+P+
Sbjct: 194 HQ-GCYVKDLSRLGRDLRKTVILDNSPASYIFHPENAVPVQSWFDDMA-DTELLN-LIPV 250
Query: 267 LKHLSLQKDVRPEL 280
+ LS DV L
Sbjct: 251 FEELSGTDDVYTSL 264
>sp|Q5XIK8|CTSL2_RAT CTD small phosphatase-like protein 2 OS=Rattus norvegicus
GN=Ctdspl2 PE=2 SV=1
Length = 465
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 94 KLTVVLDLDETLV-CAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTV 152
+ ++VLDLDETLV C+ N+ A L + L D I V V
Sbjct: 286 EFSLVLDLDETLVHCSL----------NELEDAALTF---PVLFQDV-------IYQVYV 325
Query: 153 FERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYRPSTTSTEYRE 211
RP REFL+++S+ ++ILFTA + YA L++ +D + L RL+R +
Sbjct: 326 RLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQG-N 384
Query: 212 HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLS 271
++KDL+ L +DL +T+I+DN+P +F Q NGIP + + +DN+LL ++ L K +
Sbjct: 385 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDK-NDNELLKLIPFLEKLVE 443
Query: 272 LQKDVRPELYERFHM 286
L +DVRP + +RF +
Sbjct: 444 LNEDVRPHIRDRFRL 458
>sp|Q5F3Z7|CTSL2_CHICK CTD small phosphatase-like protein 2 OS=Gallus gallus GN=CTDSPL2
PE=2 SV=2
Length = 466
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 94 KLTVVLDLDETLV-CAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTV 152
+ ++VLDLDETLV C+ N+ A L + L D I V V
Sbjct: 287 EFSLVLDLDETLVHCSL----------NELEDAALTF---PVLFQDV-------IYQVYV 326
Query: 153 FERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYRPSTTSTEYRE 211
RP REFL+++S+ ++ILFTA + YA L++ +D + L RL+R +
Sbjct: 327 RLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGN- 385
Query: 212 HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLS 271
++KDL+ L +DL +T+I+DN+P +F Q NGIP + + +DN+LL ++ L K +
Sbjct: 386 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDK-NDNELLKLIPFLEKLVE 444
Query: 272 LQKDVRPELYERFHM 286
L +DVRP + +RF +
Sbjct: 445 LNEDVRPHIRDRFRL 459
>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2
PE=1 SV=1
Length = 465
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 94 KLTVVLDLDETLV-CAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTV 152
+ ++VLDLDETLV C+ N+ A L + L D I V V
Sbjct: 286 EFSLVLDLDETLVHCSL----------NELEDAALTF---PVLFQDV-------IYQVYV 325
Query: 153 FERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYRPSTTSTEYRE 211
RP REFL+++S+ ++ILFTA + YA L++ +D + L RL+R +
Sbjct: 326 RLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQG-N 384
Query: 212 HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLS 271
++KDL+ L +DL +T+I+DN+P +F Q NGIP + + +DN+LL ++ L K +
Sbjct: 385 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDK-NDNELLKLIPFLEKLVE 443
Query: 272 LQKDVRPELYERFHM 286
L +DVRP + +RF +
Sbjct: 444 LNEDVRPHIRDRFRL 458
>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a
PE=2 SV=1
Length = 469
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 94 KLTVVLDLDETLV-CAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTV 152
+ ++VLDLDETLV C+ N+ A L + L D I V V
Sbjct: 290 EFSLVLDLDETLVHCSL----------NELEDAALTF---PVLFQDV-------IYQVYV 329
Query: 153 FERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYRPSTTSTEYRE 211
RP REFL+++S+ ++ILFTA + YA L++ +D + L RL+R +
Sbjct: 330 RLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQG-N 388
Query: 212 HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLS 271
++KDL+ L +DL +T+I+DN+P +F Q NGIP + + +DN+LL ++ L K +
Sbjct: 389 YIKDLNILGRDLSKTVIIDNSPQAFAYQLSNGIPIESWFVDK-NDNELLKLVPFLEKLVE 447
Query: 272 LQKDVRPELYERFHM 286
L +DVRP + ERF +
Sbjct: 448 LNEDVRPYIRERFRL 462
>sp|Q05D32|CTSL2_HUMAN CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2
PE=1 SV=2
Length = 466
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 94 KLTVVLDLDETLV-CAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTV 152
+ ++VLDLDETLV C+ N+ A L + L D I V V
Sbjct: 287 EFSLVLDLDETLVHCSL----------NELEDAALTF---PVLFQDV-------IYQVYV 326
Query: 153 FERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYRPSTTSTEYRE 211
RP REFL+++S+ ++ILFTA + YA L++ +D + L RL+R +
Sbjct: 327 RLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQG-N 385
Query: 212 HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLS 271
++KDL+ L +DL +T+I+DN+P +F Q NGIP + + +DN+LL ++ L K +
Sbjct: 386 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDK-NDNELLKLIPFLEKLVE 444
Query: 272 LQKDVRPELYERFHM 286
L +DVRP + +RF +
Sbjct: 445 LNEDVRPHIRDRFRL 459
>sp|Q9GZU7|CTDS1_HUMAN Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 OS=Homo sapiens GN=CTDSP1 PE=1 SV=1
Length = 261
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 94 KLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVF 153
K+ VV+DLDETLV +S PV N A F + E +G ++ V V
Sbjct: 90 KICVVIDLDETLV---HSSFKPV---NNAD------FIIPV-----EIDGV--VHQVYVL 130
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHV 213
+RP + EFL+++ E + +LFTA L YA P+ D +D F RL+R S +V
Sbjct: 131 KRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCV-FHRGNYV 189
Query: 214 KDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSLQ 273
KDLS L +DL R LI+DN+P S++ P N +P + + L+ LLP + LS
Sbjct: 190 KDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM--SDTELHDLLPFFEQLSRV 247
Query: 274 KDV 276
DV
Sbjct: 248 DDV 250
>sp|A4QNX6|CTL2B_DANRE CTD small phosphatase-like protein 2-B OS=Danio rerio GN=ctdspl2b
PE=2 SV=1
Length = 460
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 94 KLTVVLDLDETLV-CAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTV 152
+ ++VLDLDETLV C+ N+ A L + L D I V V
Sbjct: 281 EFSLVLDLDETLVHCSL----------NELDDAALTF---PVLFQDV-------IYQVYV 320
Query: 153 FERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDG-ENLFSLRLYRPSTTSTEYRE 211
RP REFL+++S+ ++ILFTA + YA L++ +D + L RL+R +
Sbjct: 321 RLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPRKQLVRHRLFREHCVCVQG-N 379
Query: 212 HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLS 271
++KDL+ L +DL +T+I+DN+P +F Q NGIP + + +D++LL ++ L K +
Sbjct: 380 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDR-NDSELLKLVPFLEKLVE 438
Query: 272 LQKDVRPELYERFHM 286
L +DVRP + ERF +
Sbjct: 439 LNEDVRPHVRERFRL 453
>sp|P58466|CTDS1_MOUSE Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 OS=Mus musculus GN=Ctdsp1 PE=1 SV=1
Length = 261
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 94 KLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVF 153
K+ VV+DLDETLV +S PV N A F + E +G ++ V V
Sbjct: 90 KICVVIDLDETLV---HSSFKPV---NNAD------FIIPV-----EIDGV--VHQVYVL 130
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHV 213
+RP + EFL+++ E + +LFTA L YA P+ D +D F RL+R S +V
Sbjct: 131 KRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCV-FHRGNYV 189
Query: 214 KDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSLQ 273
KDLS L +DL R LI+DN+P S++ P N +P + + L+ LLP + LS
Sbjct: 190 KDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM--SDTELHDLLPFFEQLSRV 247
Query: 274 KDV 276
DV
Sbjct: 248 DDV 250
>sp|Q66KM5|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis
GN=ctdspl2 PE=2 SV=1
Length = 466
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 26/196 (13%)
Query: 94 KLTVVLDLDETLV-CAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTV 152
+ ++VLDLDETLV C+ N+ A L + L D I V V
Sbjct: 287 EFSLVLDLDETLVHCSL----------NELEDAALTF---PVLFQDV-------IYQVYV 326
Query: 153 FERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYRPSTTSTEYRE 211
RP REFL+++S+ ++ILFTA + YA L++ +D + L RL+R +
Sbjct: 327 RLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHCVCVQG-N 385
Query: 212 HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHL- 270
++KDL+ L +DL +T+I+DN+P +F Q NGIP + + +D +LL L+P L++L
Sbjct: 386 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDK-NDKELLK-LVPFLENLV 443
Query: 271 SLQKDVRPELYERFHM 286
L +DVRP + +RF +
Sbjct: 444 ELNEDVRPHIRDRFRL 459
>sp|Q3KQB6|CTL2B_XENLA CTD small phosphatase-like protein 2-B OS=Xenopus laevis
GN=ctdspl2-b PE=2 SV=1
Length = 466
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 106/195 (54%), Gaps = 24/195 (12%)
Query: 94 KLTVVLDLDETLV-CAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTV 152
+ ++VLDLDETLV C+ N+ A L + L D I V V
Sbjct: 287 EFSLVLDLDETLVHCSL----------NELEDAALTF---PVLFQDV-------IYQVYV 326
Query: 153 FERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYRPSTTSTEYRE 211
RP REFL+++S+ ++ILFTA + YA L++ +D + L RL+R +
Sbjct: 327 RLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHCVCVQG-N 385
Query: 212 HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLS 271
++KDL+ L +DL +T+I+DN+P +F Q NGIP + + +D +LL ++ L K +
Sbjct: 386 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDK-NDKELLKLVPFLQKLVE 444
Query: 272 LQKDVRPELYERFHM 286
L +DVRP + +RF +
Sbjct: 445 LNEDVRPHIRDRFRL 459
>sp|P58465|CTDSL_MOUSE CTD small phosphatase-like protein OS=Mus musculus GN=Ctdspl PE=2
SV=3
Length = 276
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 22/183 (12%)
Query: 94 KLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVF 153
K VV+DLDETLV +S P++ + E +G I+ V V
Sbjct: 106 KKCVVIDLDETLV---HSSFKPISNADFIVPV--------------EIDGT--IHQVYVL 146
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHV 213
+RP + EFL+++ + + +LFTA L YA P+ D +D +F RL+R S +V
Sbjct: 147 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCV-FHRGNYV 205
Query: 214 KDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSLQ 273
KDLS L ++L + +IVDN+P S++ P N +P + D +LL+ L+P + LS +
Sbjct: 206 KDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDM-TDTELLD-LIPFFEGLSRE 263
Query: 274 KDV 276
DV
Sbjct: 264 DDV 266
>sp|Q801R4|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis
GN=ctdspl2-a PE=2 SV=1
Length = 466
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 26/196 (13%)
Query: 94 KLTVVLDLDETLV-CAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTV 152
+ ++VLDLDETLV C+ N+ A L + L D I V V
Sbjct: 287 EFSLVLDLDETLVHCSL----------NELEDAALTF---PVLFQDV-------IYQVYV 326
Query: 153 FERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYRPSTTSTEYRE 211
RP REFL+++S+ ++ILFTA + YA L++ +D + L RL+R +
Sbjct: 327 RLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHCVCVQG-N 385
Query: 212 HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHL- 270
++KDL+ L +DL +T+I+DN+P +F Q NGIP + + +D +LL L+P L++L
Sbjct: 386 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDK-NDKELLK-LVPFLENLV 443
Query: 271 SLQKDVRPELYERFHM 286
L +DVRP + +RF +
Sbjct: 444 ELNEDVRPHVRDRFRL 459
>sp|O15194|CTDSL_HUMAN CTD small phosphatase-like protein OS=Homo sapiens GN=CTDSPL PE=1
SV=2
Length = 276
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 98/188 (52%), Gaps = 22/188 (11%)
Query: 94 KLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVF 153
K VV+DLDETLV +S P++ + E +G I+ V V
Sbjct: 106 KKCVVIDLDETLV---HSSFKPISNADFIVPV--------------EIDGT--IHQVYVL 146
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHV 213
+RP + EFL+++ + + +LFTA L YA P+ D +D +F RL+R S +V
Sbjct: 147 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCV-FHRGNYV 205
Query: 214 KDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSLQ 273
KDLS L ++L + +IVDN+P S++ P N +P + D +LL+ L+P + LS +
Sbjct: 206 KDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMT-DTELLD-LIPFFEGLSRE 263
Query: 274 KDVRPELY 281
DV L+
Sbjct: 264 DDVYSMLH 271
>sp|Q9PTJ6|CTDSL_CHICK CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2
SV=2
Length = 275
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 22/189 (11%)
Query: 94 KLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVF 153
K VV+DLDETLV +S P++ + E +G I+ V V
Sbjct: 105 KKCVVIDLDETLV---HSSFKPISNADFIVPV--------------EIDGT--IHQVYVL 145
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHV 213
+RP + EFL+++ E + +LFTA L YA P+ D +D +F RL+R S +V
Sbjct: 146 KRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCV-FHRGNYV 204
Query: 214 KDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSLQ 273
KDLS L ++L + +IVDN+P S++ P N +P + D +LL+ L+P + LS +
Sbjct: 205 KDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDM-TDTELLD-LIPFFEGLSKE 262
Query: 274 KDVRPELYE 282
++V L++
Sbjct: 263 EEVYSMLHK 271
>sp|Q07800|PSR1_YEAST Phosphatase PSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PSR1 PE=1 SV=1
Length = 427
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 100/180 (55%), Gaps = 22/180 (12%)
Query: 94 KLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVF 153
K ++LDLDETLV + K+ E + + +++V V
Sbjct: 257 KKCLILDLDETLV-----------------HSSFKYLRSADFVLSVEIDDQ--VHNVYVI 297
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHV 213
+RPG+ EFL+++ + ++++FTA + Y PL+D +D + + RL+R + + E ++
Sbjct: 298 KRPGVEEFLERVGKLFEVVVFTASVSRYGDPLLDILDTDKVIHHRLFREACYNYE-GNYI 356
Query: 214 KDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSLQ 273
K+LS + + L +I+DN+P S++ P + IP + + HDN+LL++ +PLL+ LS++
Sbjct: 357 KNLSQIGRPLSDIIILDNSPASYIFHPQHAIPISSWFS-DTHDNELLDI-IPLLEDLSVK 414
>sp|Q9XYL0|CTDS_DICDI Probable C-terminal domain small phosphatase OS=Dictyostelium
discoideum GN=fcpA PE=3 SV=1
Length = 306
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 20/150 (13%)
Query: 96 TVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFER 155
T+VLDLDETLV +S PV + E EG I+ V V +R
Sbjct: 138 TLVLDLDETLV---HSSFKPVHNPDFIVPV--------------EIEGT--IHQVYVVKR 178
Query: 156 PGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKD 215
P + +FL+ ++E ++++FTA L YA P++D +D + RL+R S + + +VKD
Sbjct: 179 PFVDDFLRAIAEKFEIVVFTASLAKYADPVLDFLDTGRVIHYRLFRESCHNHK-GNYVKD 237
Query: 216 LSCLSKDLCRTLIVDNNPFSFLLQPLNGIP 245
LS L +DL T+IVDN+P S+L P N IP
Sbjct: 238 LSRLGRDLKSTIIVDNSPSSYLFHPENAIP 267
>sp|O13636|TIM50_SCHPO Mitochondrial import inner membrane translocase subunit tim50
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim50 PE=3 SV=1
Length = 452
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 79/129 (61%), Gaps = 4/129 (3%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHV 213
+RPGL FL LS + ++++FT A+P++D+ID ++ + ++ E + +
Sbjct: 202 KRPGLDYFLGYLSMYYEVVIFTRQYLATAKPIIDKIDPYHVSISAVLTRESSKYEKGKVI 261
Query: 214 KDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSLQ 273
KDLS L++DL R +++D NP S+ QP N I P++ G P D +L+ L+PLL+ +++
Sbjct: 262 KDLSYLNRDLSRVIMIDTNPESWSKQPDNAIAMAPWT-GNPKDKELVG-LIPLLEFIAIM 319
Query: 274 --KDVRPEL 280
KDVRP L
Sbjct: 320 DIKDVRPVL 328
>sp|Q20432|CNEP1_CAEEL CTD nuclear envelope phosphatase 1 homolog OS=Caenorhabditis
elegans GN=scpl-2 PE=3 SV=1
Length = 246
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 15/190 (7%)
Query: 92 LQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVT 151
+++ +VLDLDETL+ ++ LR F + + + +
Sbjct: 55 VKRKILVLDLDETLIHSHHDG----VLRQTVKPGTPSDFTIRVVIDRHPVK-------FS 103
Query: 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYRPSTTSTEYR 210
V ERP + FL +S++ +L++FTA +E Y + DR+D G + R +R T E
Sbjct: 104 VHERPHVDYFLSVVSQWYELVVFTASMEVYGTSVADRLDRGRGILKRRYFRQHCT-MEVG 162
Query: 211 EHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHL 270
+ KDLS + DL I+DN+P ++ P N IP IP P+D LLN LLP L L
Sbjct: 163 GYTKDLSAIHPDLSSICILDNSPGAYRKFPHNAIP-IPSWFSDPNDTCLLN-LLPFLDAL 220
Query: 271 SLQKDVRPEL 280
DVR L
Sbjct: 221 RFTSDVRSVL 230
>sp|Q1RMV9|CNEP1_BOVIN CTD nuclear envelope phosphatase 1 OS=Bos taurus GN=CTDNEP1 PE=2
SV=1
Length = 244
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 16/202 (7%)
Query: 87 VSEERLQKL---TVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEG 143
VS RL ++ +VLDLDETL+ ++ L T+R F ++ +
Sbjct: 51 VSRNRLSQVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVVIDKHPVR- 105
Query: 144 KPKINHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPS 203
V +RP + FL+ +S++ +L++FTA +E Y + D++D R Y
Sbjct: 106 ------FFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQ 159
Query: 204 TTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVL 263
+ E ++KDLS + DL +I+DN+P ++ P N IP I P D LLN L
Sbjct: 160 HCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIP-IKSWFSDPSDTALLN-L 217
Query: 264 LPLLKHLSLQKDVRPELYERFH 285
LP+L L DVR L H
Sbjct: 218 LPMLDALRFTADVRSVLSRNLH 239
>sp|O95476|CNEP1_HUMAN CTD nuclear envelope phosphatase 1 OS=Homo sapiens GN=CTDNEP1 PE=1
SV=2
Length = 244
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 16/202 (7%)
Query: 87 VSEERLQKL---TVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEG 143
VS RL ++ +VLDLDETL+ ++ L T+R F ++ +
Sbjct: 51 VSRNRLAQVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVVIDKHPVR- 105
Query: 144 KPKINHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPS 203
V +RP + FL+ +S++ +L++FTA +E Y + D++D R Y
Sbjct: 106 ------FFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQ 159
Query: 204 TTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVL 263
+ E ++KDLS + DL +I+DN+P ++ P N IP I P D LLN L
Sbjct: 160 HCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIP-IKSWFSDPSDTALLN-L 217
Query: 264 LPLLKHLSLQKDVRPELYERFH 285
LP+L L DVR L H
Sbjct: 218 LPMLDALRFTADVRSVLSRNLH 239
>sp|Q8JIL9|CNEP1_XENLA CTD nuclear envelope phosphatase 1 OS=Xenopus laevis GN=ctdnep1
PE=1 SV=1
Length = 244
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 15/197 (7%)
Query: 90 ERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINH 149
++++ +VLDLDETL+ ++ L T+R F ++ +
Sbjct: 57 SQVKRKVLVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVVIDKHPVR------- 105
Query: 150 VTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYRPSTTSTE 208
V +RP + FL+ +S++ +L++FTA +E Y + D++D + + R YR T E
Sbjct: 106 FFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNKGVLRRRFYRQHCT-LE 164
Query: 209 YREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLK 268
++KDLS + DL +I+DN+P ++ P N IP + + P D LLN LLP+L
Sbjct: 165 LGSYIKDLSVVHSDLSSVVILDNSPGAYRSHPDNAIPIKSWFS-DPSDTALLN-LLPMLD 222
Query: 269 HLSLQKDVRPELYERFH 285
L DVR L H
Sbjct: 223 ALRFTADVRSVLSRNLH 239
>sp|Q28HW9|CNEP1_XENTR CTD nuclear envelope phosphatase 1 OS=Xenopus tropicalis GN=ctdnep1
PE=2 SV=1
Length = 244
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 15/197 (7%)
Query: 90 ERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINH 149
++++ +VLDLDETL+ ++ L T+R F ++ +
Sbjct: 57 SQVKRKVLVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVVIDKHPVR------- 105
Query: 150 VTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYRPSTTSTE 208
V +RP + FL+ +S++ +L++FTA +E Y + D++D + R YR T E
Sbjct: 106 FFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNRGVLRRRFYRQHCT-LE 164
Query: 209 YREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLK 268
++KDLS + DL +I+DN+P ++ P N IP + + P D LLN LLP+L
Sbjct: 165 LGSYIKDLSVVHSDLSSVVILDNSPGAYRSHPDNAIPIKSWFS-DPSDTALLN-LLPMLD 222
Query: 269 HLSLQKDVRPELYERFH 285
L DVR L H
Sbjct: 223 ALRFTADVRSVLSRNLH 239
>sp|Q3B7T6|CNEP1_RAT CTD nuclear envelope phosphatase 1 OS=Rattus norvegicus GN=Ctdnep1
PE=2 SV=2
Length = 244
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 13/195 (6%)
Query: 91 RLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHV 150
++++ +VLDLDETL+ ++ L T+R F ++ +
Sbjct: 58 QVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVVIDKHPVR-------F 106
Query: 151 TVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR 210
V +RP + FL+ +S++ +L++FTA +E Y + D++D R Y + E
Sbjct: 107 FVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELG 166
Query: 211 EHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHL 270
++KDLS + DL +I+DN+P ++ P N IP I P D LLN LLP+L L
Sbjct: 167 SYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIP-IKSWFSDPSDTALLN-LLPMLDAL 224
Query: 271 SLQKDVRPELYERFH 285
DVR L H
Sbjct: 225 RFTADVRSVLSRNLH 239
>sp|Q3TP92|CNEP1_MOUSE CTD nuclear envelope phosphatase 1 OS=Mus musculus GN=Ctdnep1 PE=2
SV=2
Length = 244
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 13/195 (6%)
Query: 91 RLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHV 150
++++ +VLDLDETL+ ++ L T+R F ++ +
Sbjct: 58 QVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVVIDKHPVR-------F 106
Query: 151 TVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR 210
V +RP + FL+ +S++ +L++FTA +E Y + D++D R Y + E
Sbjct: 107 FVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELG 166
Query: 211 EHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHL 270
++KDLS + DL +I+DN+P ++ P N IP I P D LLN LLP+L L
Sbjct: 167 SYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIP-IKSWFSDPSDTALLN-LLPMLDAL 224
Query: 271 SLQKDVRPELYERFH 285
DVR L H
Sbjct: 225 RFTADVRSVLSRNLH 239
>sp|Q5U3T3|CNEPB_DANRE CTD nuclear envelope phosphatase 1B OS=Danio rerio GN=ctdnep1b PE=2
SV=1
Length = 245
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 16/202 (7%)
Query: 87 VSEERLQKL---TVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEG 143
+S RL + +VLDLDETL+ ++ L T+R F ++ +
Sbjct: 52 ISRNRLNNVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVVIDKHPVR- 106
Query: 144 KPKINHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPS 203
V +RP + FL+ +S++ +L++FTA +E Y + D++D R Y
Sbjct: 107 ------FFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNKAILKRRYYRQ 160
Query: 204 TTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVL 263
+ + ++KDLS + DL +I+DN+P ++ P N IP I P D LLN L
Sbjct: 161 HCTLDSGSYIKDLSVVHDDLSSVVILDNSPGAYRSHPDNAIP-IKSWFSDPSDTALLN-L 218
Query: 264 LPLLKHLSLQKDVRPELYERFH 285
LP+L L DVR L H
Sbjct: 219 LPMLDALRFPADVRSVLSRNLH 240
>sp|Q61C05|CNEP1_CAEBR CTD nuclear envelope phosphatase 1 homolog OS=Caenorhabditis
briggsae GN=scpl-2 PE=3 SV=1
Length = 246
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 92/190 (48%), Gaps = 15/190 (7%)
Query: 92 LQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVT 151
+++ +VLDLDETL+ ++ LR F + + + +
Sbjct: 55 VKRKILVLDLDETLIHSHHDG----VLRQTVKPGTPSDFTIRVVIDRHPVK-------FS 103
Query: 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYRPSTTSTEYR 210
V ERP + FL +S++ +L++FTA +E Y + D++D G + R +R T E
Sbjct: 104 VHERPHVDYFLTVVSQWYELVVFTASMEVYGSSVADKLDRGRGILKRRYFRQHCT-MEVG 162
Query: 211 EHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHL 270
+ KDLS + DL I+DN+P ++ P N IP IP P+D LLN LLP L L
Sbjct: 163 GYTKDLSAIHPDLSSICILDNSPGAYRKFPHNAIP-IPSWFSDPNDTCLLN-LLPFLDAL 220
Query: 271 SLQKDVRPEL 280
DVR L
Sbjct: 221 RFTSDVRSVL 230
>sp|Q9D880|TIM50_MOUSE Mitochondrial import inner membrane translocase subunit TIM50
OS=Mus musculus GN=Timm50 PE=1 SV=1
Length = 353
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHV 213
+RPG+ +QL+ ++++FT+ A PL+D +D S RL+R +T E HV
Sbjct: 173 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYME-GHHV 231
Query: 214 KDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSLQ 273
KD+SCL++D R ++VD +F LQP NG+ P+ D+++L L LK ++L
Sbjct: 232 KDISCLNRDPARVVVVDCKKEAFRLQPFNGVALRPWDGNS--DDRVLLDLSAFLKTIALN 289
Query: 274 K--DVR 277
+ DVR
Sbjct: 290 QVEDVR 295
>sp|Q5U395|CNEPA_DANRE CTD nuclear envelope phosphatase 1A OS=Danio rerio GN=ctdnep1a PE=2
SV=1
Length = 245
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 16/202 (7%)
Query: 87 VSEERL---QKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEG 143
+S RL ++ +VLDLDETL+ ++ L T+R F ++ +
Sbjct: 52 ISRNRLNAVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVVIDKHPVR- 106
Query: 144 KPKINHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPS 203
V +RP + FL+ +S++ +L++FTA +E Y + D++D R Y
Sbjct: 107 ------FFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNRGILKRRYYRQ 160
Query: 204 TTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVL 263
+ + ++KDLS + DL +I+DN+P ++ P N IP I P D LLN L
Sbjct: 161 HCTLDLGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIP-IKSWFSDPSDTALLN-L 218
Query: 264 LPLLKHLSLQKDVRPELYERFH 285
LP+L L DVR L H
Sbjct: 219 LPMLDALRFTSDVRSVLSRNLH 240
>sp|Q02776|TIM50_YEAST Mitochondrial import inner membrane translocase subunit TIM50
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM50 PE=1 SV=1
Length = 476
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 81/130 (62%), Gaps = 11/130 (8%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLF-SLRLYRPSTTSTEYRE- 211
+RPG FL LS++ +++LF++ Y+ + +++D + F S L++ Y++
Sbjct: 217 KRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCV---YKDG 273
Query: 212 -HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHL 270
H+KDLS L++DL + +I+D +P S+ LQP N IP P++ D++L+ L+P L++L
Sbjct: 274 VHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWNG--EADDKLVR-LIPFLEYL 330
Query: 271 SLQ--KDVRP 278
+ Q KDVRP
Sbjct: 331 ATQQTKDVRP 340
>sp|Q5S7T7|TIM50_PHYIN Mitochondrial import inner membrane translocase subunit TIM50
OS=Phytophthora infestans GN=TIM50 PE=2 SV=1
Length = 409
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 75/122 (61%), Gaps = 5/122 (4%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGY-ARPLVDRIDGENLFSLRLYRPSTTSTEYREH 212
+RPG+ EFL+ L ++ ++++F+ + Y A +V ++D + +L + T H
Sbjct: 194 KRPGVDEFLETLCQYYEIVIFS---QNYGAEEIVQKLDPKQC-ALHILSRDATRYLNGAH 249
Query: 213 VKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSL 272
VKDLS L++DL + +I+D++P ++ LQP N IP PF+ G+ D+ L L+P LK L+
Sbjct: 250 VKDLSNLNRDLRQVVILDDDPAAYQLQPENAIPVTPFTNGRDRDDHELKDLIPFLKALAS 309
Query: 273 QK 274
++
Sbjct: 310 ER 311
>sp|Q3SZB3|TIM50_BOVIN Mitochondrial import inner membrane translocase subunit TIM50
OS=Bos taurus GN=TIMM50 PE=2 SV=1
Length = 355
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHV 213
+RPG+ +QL+ ++++FT+ A PL+D +D S RL+R +T + HV
Sbjct: 175 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMD-GHHV 233
Query: 214 KDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSLQ 273
KD+SCL++D R ++VD +F LQP NG+ P+ D+++L L LK ++L
Sbjct: 234 KDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGN--SDDRVLLDLSAFLKTIALN 291
Query: 274 --KDVR 277
+DVR
Sbjct: 292 GVEDVR 297
>sp|Q3ZCQ8|TIM50_HUMAN Mitochondrial import inner membrane translocase subunit TIM50
OS=Homo sapiens GN=TIMM50 PE=1 SV=2
Length = 353
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHV 213
+RPG+ +QL+ ++++FT+ A PL+D +D S RL+R +T + HV
Sbjct: 173 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMD-GHHV 231
Query: 214 KDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSLQ 273
KD+SCL++D R ++VD +F LQP NG+ P+ D+++L L LK ++L
Sbjct: 232 KDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNS--DDRVLLDLSAFLKTIALN 289
Query: 274 --KDVR 277
+DVR
Sbjct: 290 GVEDVR 295
>sp|Q5RAJ8|TIM50_PONAB Mitochondrial import inner membrane translocase subunit TIM50
OS=Pongo abelii GN=TIMM50 PE=2 SV=1
Length = 353
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHV 213
+RPG+ +QL+ ++++FT+ A PL+D +D S RL+R +T + HV
Sbjct: 173 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMD-GHHV 231
Query: 214 KDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSLQ 273
KD+SCL++D R ++VD +F LQP NG+ P+ D+++L L LK ++L
Sbjct: 232 KDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNS--DDRVLLDLSAFLKTIALN 289
Query: 274 --KDVR 277
+DVR
Sbjct: 290 GVEDVR 295
>sp|P0CN66|TIM50_CRYNJ Mitochondrial import inner membrane translocase subunit TIM50
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=TIM50 PE=3 SV=1
Length = 516
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLF-SLRLYRPSTTSTEYREH 212
+RPG+ FL LS+F +++LF++ A P+ ++ID F RL+R ST S + +
Sbjct: 261 KRPGVDYFLGYLSQFYEIVLFSSQPLYTAAPIAEKIDPYQAFMPYRLFRESTRSVKGK-V 319
Query: 213 VKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSL 272
VKD+S L++D + +++D NP LQP NGI P++ G P D L++ ++P L+ + +
Sbjct: 320 VKDISFLNRDPSKVIVLDVNPEHVALQPENGIVLQPWN-GSPGDKGLVD-MIPFLESIGI 377
Query: 273 --QKDVRP 278
DVRP
Sbjct: 378 FNPADVRP 385
>sp|P0CN67|TIM50_CRYNB Mitochondrial import inner membrane translocase subunit TIM50
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=TIM50 PE=3 SV=1
Length = 516
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLF-SLRLYRPSTTSTEYREH 212
+RPG+ FL LS+F +++LF++ A P+ ++ID F RL+R ST S + +
Sbjct: 261 KRPGVDYFLGYLSQFYEIVLFSSQPLYTAAPIAEKIDPYQAFMPYRLFRESTRSVKGK-V 319
Query: 213 VKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSL 272
VKD+S L++D + +++D NP LQP NGI P++ G P D L++ ++P L+ + +
Sbjct: 320 VKDISFLNRDPSKVIVLDVNPEHVALQPENGIVLQPWN-GSPGDKGLVD-MIPFLESIGI 377
Query: 273 --QKDVRP 278
DVRP
Sbjct: 378 FNPADVRP 385
>sp|Q6FRX4|TIM50_CANGA Mitochondrial import inner membrane translocase subunit TIM50
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=TIM50 PE=3 SV=1
Length = 485
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 79/130 (60%), Gaps = 11/130 (8%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLF-SLRLYRPSTTSTEYRE- 211
+RPG FL LS++ +++LF++ YA + +++D + F S L++ Y++
Sbjct: 223 KRPGADYFLGYLSQYYEIVLFSSNYMMYAEKIAEKMDPIHAFISYNLFKEHCV---YKDG 279
Query: 212 -HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHL 270
H+KDLS L++DL + +I+D + S+ LQP N IP P+ D++LL L+P L+++
Sbjct: 280 VHIKDLSKLNRDLKKVMIIDTDENSYKLQPENAIPMDPWDG--KADDKLLR-LIPFLEYM 336
Query: 271 SLQK--DVRP 278
+ Q+ DVRP
Sbjct: 337 ATQQVEDVRP 346
>sp|Q6CM45|TIM50_KLULA Mitochondrial import inner membrane translocase subunit TIM50
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM50
PE=3 SV=1
Length = 480
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 22/152 (14%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID------GENLFSLR-LYRPSTTS 206
+RPG+ FL LS++ +++LF++ YA + +++D NLF LY+
Sbjct: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGV-- 277
Query: 207 TEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPL 266
H+KDLS L++DL + LI+D + SF LQP N I P+ D++LL L+P
Sbjct: 278 -----HIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDG--KADDRLLR-LIPF 329
Query: 267 LKHLSLQK--DVRPELY---ERFHMPEWFQKQ 293
L++L+ Q+ DVRP L + ++PE F+K+
Sbjct: 330 LEYLATQQVSDVRPILKSFPDNKNIPEAFEKR 361
>sp|Q4PEW9|TIM50_USTMA Mitochondrial import inner membrane translocase subunit TIM50
OS=Ustilago maydis (strain 521 / FGSC 9021) GN=TIM50
PE=3 SV=1
Length = 493
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 8/139 (5%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLF-SLRLYRPSTTSTEYREH 212
+RPGL FL LS+F +++LFT A P+++++D + F + L+R S + + +
Sbjct: 246 KRPGLDHFLGYLSQFYEIVLFTTQPFFTAGPIIEKLDPDRRFITYTLFRESCRTVDGK-L 304
Query: 213 VKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSL 272
VKDL+ L++DL + ++VD NP SF L P NGI P+ G+ D +L+ L+P + + +
Sbjct: 305 VKDLNHLNRDLSKVVVVDTNPDSFHLHPENGILVKPWK-GEREDRELIG-LIPFFEAIGI 362
Query: 273 QK--DVRPEL--YERFHMP 287
DVR + Y H+P
Sbjct: 363 YNIDDVRNTIKAYTGTHIP 381
>sp|Q8VYE2|TIM50_ARATH Mitochondrial import inner membrane translocase subunit TIM50
OS=Arabidopsis thaliana GN=TIM50 PE=1 SV=1
Length = 376
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 7/148 (4%)
Query: 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYRE 211
F+RPG+ FL+ L +F ++++++ +E Y P+ +++D +L R T E +
Sbjct: 214 TFKRPGVDAFLEHLGKFYEIVVYSDQMEMYVLPVCEKLDPNGYIRYKLAR-GATKYENGK 272
Query: 212 HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLS 271
H +DLS L++D + L V N F LQP N +P P+ + D L++ L+P L++++
Sbjct: 273 HYRDLSKLNRDPKKILFVSANAFESTLQPENSVPIKPYKL-EADDTALVD-LIPFLEYVA 330
Query: 272 LQK--DVRPEL--YERFHMPEWFQKQGI 295
D+RP L +ER + + F + I
Sbjct: 331 RNSPADIRPVLASFERKDIAKEFIDRSI 358
>sp|Q874C1|TIM50_NEUCR Mitochondrial import inner membrane translocase subunit tim-50
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-50 PE=1 SV=1
Length = 540
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 11/146 (7%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--E 211
+RPG+ FL+ LS++ +++LFT+ A P+V ++D L+R +T+Y+ E
Sbjct: 274 KRPGVDYFLRYLSQYYEIVLFTSVPFANAEPIVRKMDPYRFIMWPLFR---EATKYKDGE 330
Query: 212 HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLS 271
VKDLS L++DL + +I+D +P QP N I +P G P D +L++ L+P L+ +
Sbjct: 331 IVKDLSYLNRDLSKVIIIDTDPKHVRAQPENAI-VLPKWKGDPKDTELVS-LVPFLEFIH 388
Query: 272 LQK--DVRPEL--YERFHMPEWFQKQ 293
DVR L +E H+P F ++
Sbjct: 389 TMNFPDVRKVLKSFEGQHIPTEFARR 414
>sp|O59718|NEM1_SCHPO Nuclear envelope morphology protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nem1 PE=3 SV=1
Length = 476
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 90/196 (45%), Gaps = 37/196 (18%)
Query: 91 RLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHV 150
+L + T+VLDLDETL+ + S + G+P HV
Sbjct: 300 KLPRKTLVLDLDETLIHSVSRGS-------------------------RTTSGQPIEVHV 334
Query: 151 T--------VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLRLYR 201
+ +RP L FL +S++ LILFTA ++ YA P++D ++ + +F+ R YR
Sbjct: 335 PGEHPILYYIHKRPHLDYFLSNVSQWFRLILFTASVQPYADPIIDYLERDKKIFAKRYYR 394
Query: 202 PSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLN 261
+ VKD+S + L R +I+DN+P S+ N IP I P D LLN
Sbjct: 395 QHCALVD-SSFVKDISICNIHLSRIMIIDNSPASYNAHKENAIP-IEGWISDPSDVDLLN 452
Query: 262 VLLPLLKHLSLQKDVR 277
LL L L DVR
Sbjct: 453 -LLSFLHALQYVHDVR 467
>sp|Q6NWD4|TIM50_DANRE Mitochondrial import inner membrane translocase subunit TIM50
OS=Danio rerio GN=timm50 PE=2 SV=2
Length = 387
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHV 213
+RPG+ +QL+ ++++FT+ A PL+D ID + RL+R +T E HV
Sbjct: 208 KRPGIDYLFQQLAPLYEIVIFTSETGMTAYPLIDSIDPQGFVMYRLFRDATRYME-GHHV 266
Query: 214 KDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHLSLQ 273
KD+SCL++D + ++VD +F LQP NG+ + G D L + L LK ++
Sbjct: 267 KDVSCLNRDTSKVIVVDCKREAFGLQPFNGLALCKWD-GNSEDRTLYD-LAAFLKTIATS 324
Query: 274 --KDVRPELYERFH 285
+DVR L H
Sbjct: 325 GVEDVRSVLENYAH 338
>sp|Q75A73|TIM50_ASHGO Mitochondrial import inner membrane translocase subunit TIM50
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TIM50 PE=3 SV=2
Length = 476
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 82/145 (56%), Gaps = 14/145 (9%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLF-SLRLYRPSTTSTEYRE- 211
+RPG FL LS++ +++LF++ Y+ +V+++D F + L++ Y++
Sbjct: 216 KRPGADYFLGYLSQYYEIVLFSSNYMVYSEKVVEKLDPIRAFITYNLFKDHCV---YKDG 272
Query: 212 -HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQLLNVLLPLLKHL 270
H+KDLS L++DL +TLI+D +P S LQ N I P+ D+ LL +P L++L
Sbjct: 273 IHIKDLSHLNRDLGKTLIIDTDPNSVKLQMENAILAEPWDGKA--DDALLRY-IPFLEYL 329
Query: 271 SLQ--KDVRPEL---YERFHMPEWF 290
Q DVRP L +R H+PE F
Sbjct: 330 VTQPINDVRPILNSFKDRHHIPEEF 354
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,446,127
Number of Sequences: 539616
Number of extensions: 4581858
Number of successful extensions: 10370
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 10197
Number of HSP's gapped (non-prelim): 105
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)