Query 022267
Match_columns 300
No_of_seqs 240 out of 1597
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:18:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 9E-64 2E-68 436.6 19.0 248 24-300 81-337 (372)
2 PTZ00203 cathepsin L protease; 100.0 1E-57 2.2E-62 416.0 23.6 250 23-300 46-306 (348)
3 KOG1543 Cysteine proteinase Ca 100.0 3.4E-56 7.5E-61 403.2 24.0 244 28-300 40-289 (325)
4 PTZ00021 falcipain-2; Provisio 100.0 1.7E-55 3.7E-60 412.7 22.5 249 21-300 175-450 (489)
5 PTZ00200 cysteine proteinase; 100.0 1.5E-54 3.2E-59 405.1 24.2 245 23-300 134-408 (448)
6 cd02620 Peptidase_C1A_Cathepsi 100.0 4E-49 8.8E-54 344.4 20.3 199 99-300 1-204 (236)
7 cd02621 Peptidase_C1A_Cathepsi 100.0 2E-47 4.3E-52 335.4 19.3 185 98-300 1-208 (243)
8 cd02698 Peptidase_C1A_Cathepsi 100.0 5.4E-47 1.2E-51 331.6 20.3 187 98-300 1-199 (239)
9 PTZ00049 cathepsin C-like prot 100.0 4.4E-45 9.6E-50 349.6 20.2 204 95-300 378-642 (693)
10 cd02248 Peptidase_C1A Peptidas 100.0 8.2E-45 1.8E-49 312.1 19.2 175 99-300 1-178 (210)
11 PTZ00364 dipeptidyl-peptidase 100.0 2.6E-44 5.6E-49 341.0 18.7 189 95-300 202-423 (548)
12 PF00112 Peptidase_C1: Papain 100.0 8.9E-42 1.9E-46 294.4 14.3 179 98-300 1-185 (219)
13 KOG1544 Predicted cysteine pro 100.0 1.4E-42 3E-47 300.0 5.4 264 31-300 141-426 (470)
14 smart00645 Pept_C1 Papain fami 100.0 6.4E-39 1.4E-43 267.4 14.2 138 98-300 1-140 (174)
15 cd02619 Peptidase_C1 C1 Peptid 100.0 4.5E-38 9.7E-43 271.9 18.0 177 101-300 1-193 (223)
16 PTZ00462 Serine-repeat antigen 100.0 3.1E-35 6.6E-40 289.5 18.0 184 108-300 538-746 (1004)
17 COG4870 Cysteine protease [Pos 99.7 3.9E-18 8.6E-23 151.8 4.1 167 96-289 97-274 (372)
18 cd00585 Peptidase_C1B Peptidas 99.5 3.5E-13 7.6E-18 126.2 11.7 79 114-192 54-159 (437)
19 PF08246 Inhibitor_I29: Cathep 98.5 9.8E-08 2.1E-12 64.5 2.8 44 26-70 13-58 (58)
20 smart00848 Inhibitor_I29 Cathe 97.8 6.3E-06 1.4E-10 55.2 0.9 42 27-69 14-57 (57)
21 PF08127 Propeptide_C1: Peptid 97.8 2.8E-05 6E-10 48.3 3.5 39 38-79 1-39 (41)
22 PF03051 Peptidase_C1_2: Pepti 97.7 5.9E-05 1.3E-09 71.3 6.5 79 114-192 55-160 (438)
23 PF05543 Peptidase_C47: Stapho 95.7 0.093 2E-06 43.1 8.8 111 119-297 18-137 (175)
24 PF13529 Peptidase_C39_2: Pept 95.2 0.18 3.9E-06 39.3 9.0 48 236-289 86-133 (144)
25 COG3579 PepC Aminopeptidase C 94.8 0.06 1.3E-06 48.6 5.4 77 116-192 59-162 (444)
26 PF03051 Peptidase_C1_2: Pepti 91.7 0.31 6.6E-06 46.4 5.2 59 241-300 301-381 (438)
27 PF14399 Transpep_BrtH: NlpC/p 88.8 1 2.2E-05 40.8 6.0 46 240-292 79-124 (317)
28 KOG4128 Bleomycin hydrolases a 88.8 0.46 1E-05 42.9 3.5 79 114-192 62-169 (457)
29 PF12385 Peptidase_C70: Papain 87.2 12 0.00026 30.4 10.3 37 238-289 97-133 (166)
30 PF09778 Guanylate_cyc_2: Guan 81.8 3.9 8.4E-05 35.0 5.7 53 237-290 111-171 (212)
31 PF11395 DUF2873: Protein of u 78.4 2.1 4.6E-05 25.5 2.1 22 3-24 15-36 (43)
32 PF07172 GRP: Glycine rich pro 71.9 4.1 9E-05 30.2 2.8 20 1-21 1-20 (95)
33 COG4990 Uncharacterized protei 68.0 11 0.00024 31.3 4.6 39 237-292 121-159 (195)
34 PHA02909 hypothetical protein; 67.1 4.5 9.8E-05 26.5 1.8 21 1-21 35-55 (72)
35 cd02549 Peptidase_C39A A sub-f 64.0 14 0.0003 28.6 4.6 34 242-289 70-103 (141)
36 PF13956 Ibs_toxin: Toxin Ibs, 61.4 3.6 7.8E-05 20.4 0.5 14 1-14 1-14 (19)
37 PLN03207 stomagen; Provisional 60.9 8.2 0.00018 28.5 2.4 44 5-48 14-57 (113)
38 PF12273 RCR: Chitin synthesis 49.2 12 0.00027 29.2 2.0 15 6-20 4-18 (130)
39 PF07172 GRP: Glycine rich pro 47.3 13 0.00029 27.5 1.7 20 3-22 6-25 (95)
40 PF10731 Anophelin: Thrombin i 37.7 40 0.00088 22.5 2.6 20 4-23 3-22 (65)
41 PF06143 Baculo_11_kDa: Baculo 33.9 15 0.00033 26.4 0.2 20 2-21 41-60 (84)
42 PF01754 zf-A20: A20-like zinc 31.1 27 0.00058 19.0 0.9 19 109-127 6-24 (25)
43 PF06692 MNSV_P7B: Melon necro 30.2 59 0.0013 21.3 2.4 17 4-20 14-30 (61)
44 PF08139 LPAM_1: Prokaryotic m 30.2 31 0.00067 18.8 1.0 14 2-15 7-20 (25)
45 PF08475 Baculo_VP91_N: Viral 30.0 49 0.0011 27.6 2.6 41 6-49 5-45 (183)
46 PF11857 DUF3377: Domain of un 29.3 53 0.0012 23.0 2.3 22 6-27 38-59 (74)
47 smart00259 ZnF_A20 A20-like zi 22.5 47 0.001 18.3 0.8 19 109-127 7-25 (26)
48 PF09680 Tiny_TM_bacill: Prote 22.4 90 0.002 16.8 1.9 9 9-17 9-17 (24)
49 PF15284 PAGK: Phage-encoded v 21.8 85 0.0018 21.1 2.1 17 6-23 7-23 (61)
50 PRK09458 pspB phage shock prot 20.7 1.1E+02 0.0025 21.5 2.7 20 1-20 1-20 (75)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-64 Score=436.62 Aligned_cols=248 Identities=27% Similarity=0.497 Sum_probs=202.1
Q ss_pred cccchhhhccccccChHHH--HHHHHcCCCCceEEecCCCCCCCCHHHHHHhh-CCCCCCCCCCCCCCccccCCCCCCCC
Q 022267 24 AEGVVSKLKLDSHILQDSI--IKEVNENPKAGWKAARNPQFSNYTVGQFKHLL-GVKPTPKGLLLGVPVKTHDKSLKLPK 100 (300)
Q Consensus 24 ~~~~~~~~~~~~~i~~~~~--i~~~N~~~~~~~~~~~n~~fsd~t~~Ef~~~~-~~~~~~~~~~~~~~~~~~~~~~~lP~ 100 (300)
.+.+..|...|..||..++ +++++++...+-+.|+| +|||||+|||++++ +.+...................+||+
T Consensus 81 ~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvt-qFSDlT~eEFkk~~l~~~~~~~~~~~~~~~~~~~~~~~lP~ 159 (372)
T KOG1542|consen 81 SYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVT-QFSDLTEEEFKKIYLGVKRRGSKLPGDAAEAPIEPGESLPE 159 (372)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCcc-chhhcCHHHHHHHhhccccccccCccccccCcCCCCCCCCc
Confidence 3447778888999999986 45577754458888999 99999999999844 44432111111111111234568999
Q ss_pred ccccCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHhcCCCCCCCCCCCChHHHHHHHHH
Q 022267 101 SFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVH 180 (300)
Q Consensus 101 ~~D~R~~w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~~ 180 (300)
+||||++ |+||||||||.||||||||+++++|++++|+++++++||||||+||+. +++||+||.+..||+|+++
T Consensus 160 ~fDWR~k----gaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~--~d~gC~GGl~~nA~~~~~~ 233 (372)
T KOG1542|consen 160 SFDWRDK----GAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS--CDNGCNGGLMDNAFKYIKK 233 (372)
T ss_pred ccchhcc----CCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC--cCCcCCCCChhHHHHHHHH
Confidence 9999998 999999999999999999999999999999999999999999999996 6899999999999999555
Q ss_pred -cCccCCCCcCCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeEE-eCCCHHHHHHHHHHcCCEEEEEEe
Q 022267 181 -HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTV 258 (300)
Q Consensus 181 -~G~~~e~~yPY~~~~~c~~~~~~~~~~~~~c~~~C~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l~~~GPV~v~i~~ 258 (300)
.|+..|++|||++.. .+.|..... ..++.|.+|. ++.||++|.+.|.++|||+|+|++
T Consensus 234 ~gGL~~E~dYPY~g~~----------------~~~C~~~~~----~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa 293 (372)
T KOG1542|consen 234 AGGLEKEKDYPYTGKK----------------GNQCHFDKS----KIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINA 293 (372)
T ss_pred hCCccccccCCccccC----------------CCccccchh----hceEEEeccEecCCCHHHHHHHHHhcCCeEEEEch
Confidence 589999999997652 225665442 4668899998 889999999999999999999996
Q ss_pred ccccccCCCCeEec--c-CCCCCCCcEEEEEEecCCCC-CcCceec
Q 022267 259 YEDFAHYKSGVYKH--I-TGDVMGGHAVKLIGWGTSDD-GEDYWVC 300 (300)
Q Consensus 259 ~~~f~~Y~~Giy~~--~-~~~~~~~Hav~iVGyg~~~~-g~~YWiv 300 (300)
..+|+|.+||..+ . |....+||||+||||| ... .++||||
T Consensus 294 -~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG-~~g~~~PYWIV 337 (372)
T KOG1542|consen 294 -KPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYG-SSGYEKPYWIV 337 (372)
T ss_pred -HHHHHhcccccCCCcccCCccccCceEEEEeec-CCCCCCceEEE
Confidence 5799999999987 3 4455689999999999 666 8999997
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=1e-57 Score=415.97 Aligned_cols=250 Identities=22% Similarity=0.427 Sum_probs=191.8
Q ss_pred ccccc-hhhhccccccChHH--HHHHHHcCCCCceEEecCCCCCCCCHHHHHH-hhCCCC-CCCCCC-CCCCccc-cCCC
Q 022267 23 FAEGV-VSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKP-TPKGLL-LGVPVKT-HDKS 95 (300)
Q Consensus 23 ~~~~~-~~~~~~~~~i~~~~--~i~~~N~~~~~~~~~~~n~~fsd~t~~Ef~~-~~~~~~-~~~~~~-~~~~~~~-~~~~ 95 (300)
.+.+. ..|...|+.||.++ .|++||++ +.+|++++| +|+|||+|||++ +++... ...... ....... ....
T Consensus 46 ~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~~~~lg~N-~FaDlT~eEf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 123 (348)
T PTZ00203 46 QRAYGTLTEEQQRLANFERNLELMREHQAR-NPHARFGIT-KFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRKARADL 123 (348)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEecc-ccccCCHHHHHHHhcCCCccccccccccccccccccccc
Confidence 45554 45777899999996 59999984 569999999 999999999987 443221 110100 0000001 0112
Q ss_pred CCCCCccccCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHhcCCCCCCCCCCCChHHHH
Q 022267 96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAW 175 (300)
Q Consensus 96 ~~lP~~~D~R~~w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~ 175 (300)
.++|++||||++ |+|+||||||.||||||||+++++|++++|+++..+.||+|||+||+. .+.||+||++..||
T Consensus 124 ~~lP~~~DWR~~----g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~--~~~GC~GG~~~~a~ 197 (348)
T PTZ00203 124 SAVPDAVDWREK----GAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH--VDNGCGGGLMLQAF 197 (348)
T ss_pred ccCCCCCcCCcC----CCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC--CCCCCCCCCHHHHH
Confidence 368999999998 889999999999999999999999999999999999999999999986 36799999999999
Q ss_pred HHHHHc---CccCCCCcCCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeEE-eCCCHHHHHHHHHHcCC
Q 022267 176 RYFVHH---GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGP 251 (300)
Q Consensus 176 ~~~~~~---G~~~e~~yPY~~~~~c~~~~~~~~~~~~~c~~~C~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l~~~GP 251 (300)
+|++++ |+++|++|||.+.++ ..+ .|..... ....+.+.+|. +..++++|+.+|+++||
T Consensus 198 ~yi~~~~~ggi~~e~~YPY~~~~~----------~~~----~C~~~~~---~~~~~~i~~~~~i~~~e~~~~~~l~~~GP 260 (348)
T PTZ00203 198 EWVLRNMNGTVFTEKSYPYVSGNG----------DVP----ECSNSSE---LAPGARIDGYVSMESSERVMAAWLAKNGP 260 (348)
T ss_pred HHHHHhcCCCCCccccCCCccCCC----------CCC----cCCCCcc---cccceEecceeecCcCHHHHHHHHHhCCC
Confidence 999764 588999999975421 001 2332110 01224567776 66688899999999999
Q ss_pred EEEEEEeccccccCCCCeEeccCCCCCCCcEEEEEEecCCCCCcCceec
Q 022267 252 VEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWVC 300 (300)
Q Consensus 252 V~v~i~~~~~f~~Y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~YWiv 300 (300)
|+|+|++. +|++|++|||+. |....+||||+||||| +++|++||||
T Consensus 261 v~v~i~a~-~f~~Y~~GIy~~-c~~~~~nHaVliVGYG-~~~g~~YWii 306 (348)
T PTZ00203 261 ISIAVDAS-SFMSYHSGVLTS-CIGEQLNHGVLLVGYN-MTGEVPYWVI 306 (348)
T ss_pred EEEEEEhh-hhcCccCceeec-cCCCCCCeEEEEEEEe-cCCCceEEEE
Confidence 99999984 899999999975 4344469999999999 7789999997
No 3
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-56 Score=403.23 Aligned_cols=244 Identities=39% Similarity=0.669 Sum_probs=198.1
Q ss_pred hhhhccccccChHH--HHHHHHcCCCCceEEecCCCCCCCCHHHHHHhhCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 022267 28 VSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDAR 105 (300)
Q Consensus 28 ~~~~~~~~~i~~~~--~i~~~N~~~~~~~~~~~n~~fsd~t~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~D~R 105 (300)
..+...|+.+|.++ .++.+|.....+|.+++| +|+|+|.+|+++.......+.... ..........++|++||||
T Consensus 40 ~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n-~~~d~~~ee~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~s~DwR 116 (325)
T KOG1543|consen 40 RVEKKARRAIFKENLQKIESHNLKYVLSFLMGVN-QFADLTTEEFKRKKTGKKPPEIKR--DKFTEKLDGDDLPDSFDWR 116 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccc-cccccchHHHHHhhccccCccccc--cccccccchhhCCCCcccc
Confidence 45555677888886 488899866789999999 999999999998543332221111 0111122345899999999
Q ss_pred CCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhC-CCcccCHHHHHHhcCCCCCCCCCCCChHHHHHHHHHcCcc
Q 022267 106 SAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVV 184 (300)
Q Consensus 106 ~~w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~-~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~~~G~~ 184 (300)
++| ++++||||||.||||||||++++||++++|+++ ..+.||+|+|+||+.. +++||.||++..||+|++++|++
T Consensus 117 ~~~---~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG~~~~A~~yi~~~G~~ 192 (325)
T KOG1543|consen 117 DKG---AVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE-CGDGCNGGEPKNAFKYIKKNGGV 192 (325)
T ss_pred ccC---CcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC-CCCCcCCCCHHHHHHHHHHhCCC
Confidence 996 567889999999999999999999999999999 9999999999999984 67899999999999999999988
Q ss_pred C-CCCcCCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeEE-eCCCHHHHHHHHHHcCCEEEEEEecccc
Q 022267 185 T-EECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEDF 262 (300)
Q Consensus 185 ~-e~~yPY~~~~~c~~~~~~~~~~~~~c~~~C~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l~~~GPV~v~i~~~~~f 262 (300)
+ +.+|||.+.. ..|..... ...+.+.++. ++.++++|+.+|+++|||+|+|+++++|
T Consensus 193 t~~~~Ypy~~~~-----------------~~C~~~~~----~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F 251 (325)
T KOG1543|consen 193 TECENYPYIGKD-----------------GTCKSNKK----DKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDF 251 (325)
T ss_pred CCCcCCCCcCCC-----------------CCccCCCc----cceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhh
Confidence 8 9999996651 14444332 2334455555 7778999999999999999999998899
Q ss_pred ccCCCCeEeccCCCC-CCCcEEEEEEecCCCCCcCceec
Q 022267 263 AHYKSGVYKHITGDV-MGGHAVKLIGWGTSDDGEDYWVC 300 (300)
Q Consensus 263 ~~Y~~Giy~~~~~~~-~~~Hav~iVGyg~~~~g~~YWiv 300 (300)
++|++|||.+++|.. .++|||+|||||+ .+|.+||||
T Consensus 252 ~~Y~~GVy~~~~~~~~~~~Hav~iVGyG~-~~~~~YWiv 289 (325)
T KOG1543|consen 252 SLYKGGVYAEEKGDDKEGDHAVLIVGYGT-GDGVDYWIV 289 (325)
T ss_pred hhccCceEeCCCCCCCCCCceEEEEEEcC-CCCceeEEE
Confidence 999999999998876 4899999999995 778999997
No 4
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=1.7e-55 Score=412.71 Aligned_cols=249 Identities=26% Similarity=0.449 Sum_probs=190.1
Q ss_pred hccccc-chhhhccccccChHH--HHHHHHcCCCCceEEecCCCCCCCCHHHHHHh-hCCCCC-CCCC-C--CC-CCcc-
Q 022267 21 QTFAEG-VVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKHL-LGVKPT-PKGL-L--LG-VPVK- 90 (300)
Q Consensus 21 ~~~~~~-~~~~~~~~~~i~~~~--~i~~~N~~~~~~~~~~~n~~fsd~t~~Ef~~~-~~~~~~-~~~~-~--~~-~~~~- 90 (300)
.+.+.+ +..|...|+.+|.++ .|++||++++.+|++++| +|+|||.|||+.+ ++.... .... . .. ....
T Consensus 175 ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiN-qFsDlT~EEF~~~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (489)
T PTZ00021 175 EHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMN-RFGDLSFEEFKKKYLTLKSFDFKSNGKKSPRVINYDD 253 (489)
T ss_pred HhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEecc-ccccCCHHHHHHHhccccccccccccccccccccccc
Confidence 334555 445666899999996 599999866789999999 9999999999974 443211 0000 0 00 0000
Q ss_pred ---c-cCC-CCCCCCccccCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHhcCCCCCCC
Q 022267 91 ---T-HDK-SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDG 165 (300)
Q Consensus 91 ---~-~~~-~~~lP~~~D~R~~w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~~~g 165 (300)
. .+. ....|.+||||+. |.|+||||||.||||||||+++++|++++|+++..+.||+|||+||+. .+.|
T Consensus 254 ~~~~~~~~~~~~~P~s~DWR~~----g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~--~n~G 327 (489)
T PTZ00021 254 VIKKYKPKDATFDHAKYDWRLH----NGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSF--KNNG 327 (489)
T ss_pred cccccccccccCCccccccccC----CCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhcc--CCCC
Confidence 0 011 1124999999998 889999999999999999999999999999999999999999999986 3689
Q ss_pred CCCCChHHHHHHHHHc-CccCCCCcCCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeEE-eCCCHHHHH
Q 022267 166 CDGGYPISAWRYFVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIM 243 (300)
Q Consensus 166 C~GG~~~~a~~~~~~~-G~~~e~~yPY~~~~~c~~~~~~~~~~~~~c~~~C~~~~~~~~~~~~~~i~~~~-~~~~~~~ik 243 (300)
|+||++..||+|+.+. |+++|++|||.+.. .+ .|..... ...+++.+|. ++ +++|+
T Consensus 328 C~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~------------~~----~C~~~~~----~~~~~i~~y~~i~--~~~lk 385 (489)
T PTZ00021 328 CYGGLIPNAFEDMIELGGLCSEDDYPYVSDT------------PE----LCNIDRC----KEKYKIKSYVSIP--EDKFK 385 (489)
T ss_pred CCCcchHhhhhhhhhccccCcccccCccCCC------------CC----ccccccc----cccceeeeEEEec--HHHHH
Confidence 9999999999999776 89999999996541 11 2221110 1234677776 54 57899
Q ss_pred HHHHHcCCEEEEEEeccccccCCCCeEeccCCCCCCCcEEEEEEecCCCC----------CcCceec
Q 022267 244 AEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDD----------GEDYWVC 300 (300)
Q Consensus 244 ~~l~~~GPV~v~i~~~~~f~~Y~~Giy~~~~~~~~~~Hav~iVGyg~~~~----------g~~YWiv 300 (300)
++|+.+|||+|+|++.++|++|++|||+++|.. .+||||+||||| +++ +.+||||
T Consensus 386 ~al~~~GPVsv~i~a~~~f~~YkgGIy~~~C~~-~~nHAVlIVGYG-~e~~~~~~~~~~~~~~YWIV 450 (489)
T PTZ00021 386 EAIRFLGPISVSIAVSDDFAFYKGGIFDGECGE-EPNHAVILVGYG-MEEIYNSDTKKMEKRYYYII 450 (489)
T ss_pred HHHHhcCCeEEEEEeecccccCCCCcCCCCCCC-ccceEEEEEEec-CcCCcccccccCCCCCEEEE
Confidence 999999999999999889999999999876544 479999999999 543 2579997
No 5
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1.5e-54 Score=405.06 Aligned_cols=245 Identities=27% Similarity=0.475 Sum_probs=186.7
Q ss_pred cccc-chhhhccccccChHH--HHHHHHcCCCCceEEecCCCCCCCCHHHHHHhh-CCCCCCCC----CC--------CC
Q 022267 23 FAEG-VVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKHLL-GVKPTPKG----LL--------LG 86 (300)
Q Consensus 23 ~~~~-~~~~~~~~~~i~~~~--~i~~~N~~~~~~~~~~~n~~fsd~t~~Ef~~~~-~~~~~~~~----~~--------~~ 86 (300)
.+.+ +..|...|+.+|.++ .|++||. +.+|++|+| +|+|||+|||.+++ +...+... .. ..
T Consensus 134 ~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~--~~~y~lgiN-~FsDlT~eEF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (448)
T PTZ00200 134 NRKHATHAERLNRFLTFRNNYLEVKSHKG--DEPYSKEIN-KFSDLTEEEFRKLFPVIKVPPKSNSTSHNNDFKARHVSN 210 (448)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHhcC--cCCeEEecc-ccccCCHHHHHHHhccCCCcccccccccccccccccccc
Confidence 4555 456667788999996 4888885 368999999 99999999998754 32211000 00 00
Q ss_pred CCc-cc--------cC---CCCCCCCccccCCCCCCCCCCCcccCCC-CCccHHHHHHHHHHHHHHHHHhCCCcccCHHH
Q 022267 87 VPV-KT--------HD---KSLKLPKSFDARSAWPQCSTISRILDQG-HCGSCWAFGAVEALSDRFCIHFGMNLSLSVND 153 (300)
Q Consensus 87 ~~~-~~--------~~---~~~~lP~~~D~R~~w~~~~~v~~v~dQg-~CgsCwAfa~~~~le~~~~i~~~~~~~lS~q~ 153 (300)
... .. .. ....+|++||||+. |.|+|||||| .||||||||+++++|++++|+++..+.||+||
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~----g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~~LSeQq 286 (448)
T PTZ00200 211 PTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRA----DAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQE 286 (448)
T ss_pred cccccccccccccccccccccccCCCCccCCCC----CCCCCcccCCCccchHHHHhHHHHHHHHHHHhcCCCeecCHHH
Confidence 000 00 00 01236999999997 8899999999 99999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCChHHHHHHHHHcCccCCCCcCCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeE
Q 022267 154 LLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAY 233 (300)
Q Consensus 154 l~dC~~~~~~~gC~GG~~~~a~~~~~~~G~~~e~~yPY~~~~~c~~~~~~~~~~~~~c~~~C~~~~~~~~~~~~~~i~~~ 233 (300)
|+||+. .+.||+||++..||+|++++|+++|++|||.+.. ..|.... ...+.+.+|
T Consensus 287 LvDC~~--~~~GC~GG~~~~A~~yi~~~Gi~~e~~YPY~~~~-----------------~~C~~~~-----~~~~~i~~y 342 (448)
T PTZ00200 287 LVNCDT--KSQGCSGGYPDTALEYVKNKGLSSSSDVPYLAKD-----------------GKCVVSS-----TKKVYIDSY 342 (448)
T ss_pred HhhccC--ccCCCCCCcHHHHHHHHhhcCccccccCCCCCCC-----------------CCCcCCC-----CCeeEecce
Confidence 999986 3689999999999999999999999999997641 2343322 122457777
Q ss_pred EeCCCHHHHHHHHHHcCCEEEEEEeccccccCCCCeEeccCCCCCCCcEEEEEEecCC-CCCcCceec
Q 022267 234 RINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTS-DDGEDYWVC 300 (300)
Q Consensus 234 ~~~~~~~~ik~~l~~~GPV~v~i~~~~~f~~Y~~Giy~~~~~~~~~~Hav~iVGyg~~-~~g~~YWiv 300 (300)
.+..+.+.++++ +.+|||+|+|+++++|++|++|||+++|... +||||+|||||.+ ++|.+||||
T Consensus 343 ~~~~~~~~l~~~-l~~GPV~v~i~~~~~f~~Yk~GIy~~~C~~~-~nHaV~lVGyG~d~~~g~~YWII 408 (448)
T PTZ00200 343 LVAKGKDVLNKS-LVISPTVVYIAVSRELLKYKSGVYNGECGKS-LNHAVLLVGEGYDEKTKKRYWII 408 (448)
T ss_pred EecCHHHHHHHH-HhcCCEEEEeecccccccCCCCccccccCCC-CcEEEEEEEecccCCCCCceEEE
Confidence 744444555555 4689999999998899999999998766544 7999999999953 468999997
No 6
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=4e-49 Score=344.39 Aligned_cols=199 Identities=52% Similarity=1.030 Sum_probs=157.3
Q ss_pred CCccccCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhC--CCcccCHHHHHHhcCCCCCCCCCCCChHHHHH
Q 022267 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISAWR 176 (300)
Q Consensus 99 P~~~D~R~~w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~ 176 (300)
|++||||++|.++..|+||+|||.||||||||++++||++++|+++ +.+.||+|+|+||+. ..+.||+||++..||+
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~-~~~~gC~GG~~~~a~~ 79 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCS-GCGDGCNGGYPDAAWK 79 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcC-CCCCCCCCCCHHHHHH
Confidence 8899999998777667799999999999999999999999999988 789999999999987 2367999999999999
Q ss_pred HHHHcCccCCCCcCCCCCCC-CCCCCCCCCCCCccccccccccccc-cccceeeEeeeEE-eCCCHHHHHHHHHHcCCEE
Q 022267 177 YFVHHGVVTEECDPYFDSTG-CSHPGCEPAYPTPKCVRKCVKKNQL-WRNSKHYSISAYR-INSDPEDIMAEIYKNGPVE 253 (300)
Q Consensus 177 ~~~~~G~~~e~~yPY~~~~~-c~~~~~~~~~~~~~c~~~C~~~~~~-~~~~~~~~i~~~~-~~~~~~~ik~~l~~~GPV~ 253 (300)
|++++|+++|++|||.+... |....+........|...|...... +. ...+++..+. +..++++||.+|+++|||+
T Consensus 80 ~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 80 YLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYE-EDKHKGKSAYSVPSDETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHHhcCCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccc-eeeeeecceeeeCCHHHHHHHHHHHCCCeE
Confidence 99999999999999976432 2211110011123334456543210 11 1223444444 5567899999999999999
Q ss_pred EEEEeccccccCCCCeEeccCCCCCCCcEEEEEEecCCCCCcCceec
Q 022267 254 VSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWVC 300 (300)
Q Consensus 254 v~i~~~~~f~~Y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~YWiv 300 (300)
++|+++++|+.|++|||+..++...++|||+||||| +++|++||||
T Consensus 159 v~i~~~~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg-~~~g~~YWiv 204 (236)
T cd02620 159 AAFTVYEDFLYYKSGVYQHTSGKQLGGHAVKIIGWG-VENGVPYWLA 204 (236)
T ss_pred EEEEechhhhhcCCcEEeecCCCCcCCeEEEEEEEe-ccCCeeEEEE
Confidence 999998899999999998766655679999999999 7789999997
No 7
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=2e-47 Score=335.43 Aligned_cols=185 Identities=37% Similarity=0.726 Sum_probs=147.9
Q ss_pred CCCccccCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhCC------CcccCHHHHHHhcCCCCCCCCCCCCh
Q 022267 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM------NLSLSVNDLLACCGFLCGDGCDGGYP 171 (300)
Q Consensus 98 lP~~~D~R~~w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~------~~~lS~q~l~dC~~~~~~~gC~GG~~ 171 (300)
||++||||+.|++++.|+||||||.||||||||++++||++++|+++. .+.||+|||+||+. .+.||+||++
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~--~~~GC~GG~~ 78 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ--YSQGCDGGFP 78 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC--CCCCCCCCCH
Confidence 799999999977777899999999999999999999999999998876 78999999999986 3589999999
Q ss_pred HHHHHHHHHcCccCCCCcCCCC-C-CCCCCCCCCCCCCCccccccccccccccccceeeEeeeEEeCCCHHHHHHHHHHc
Q 022267 172 ISAWRYFVHHGVVTEECDPYFD-S-TGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKN 249 (300)
Q Consensus 172 ~~a~~~~~~~G~~~e~~yPY~~-~-~~c~~~~~~~~~~~~~c~~~C~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~~ 249 (300)
..|++|++++|+++|++|||.. . ..|.... ..|.. +.......+.++....++++||++|+++
T Consensus 79 ~~a~~~~~~~Gi~~e~~yPY~~~~~~~C~~~~-----------~~~~~----~~~~~~~~i~~~~~~~~~~~ik~~i~~~ 143 (243)
T cd02621 79 FLVGKFAEDFGIVTEDYFPYTADDDRPCKASP-----------SECRR----YYFSDYNYVGGCYGCTNEDEMKWEIYRN 143 (243)
T ss_pred HHHHHHHHhcCcCCCceeCCCCCCCCCCCCCc-----------ccccc----ccccceeEcccccccCCHHHHHHHHHHc
Confidence 9999999999999999999965 2 1232110 00100 0111112233333235789999999999
Q ss_pred CCEEEEEEeccccccCCCCeEeccC----C-C--------CCCCcEEEEEEecCCCC--CcCceec
Q 022267 250 GPVEVSFTVYEDFAHYKSGVYKHIT----G-D--------VMGGHAVKLIGWGTSDD--GEDYWVC 300 (300)
Q Consensus 250 GPV~v~i~~~~~f~~Y~~Giy~~~~----~-~--------~~~~Hav~iVGyg~~~~--g~~YWiv 300 (300)
|||+|+|++.++|++|++|||+.+. | . ..++|||+||||| +++ |++||||
T Consensus 144 GPv~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg-~~~~~g~~YWii 208 (243)
T cd02621 144 GPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWG-EDEIKGEKYWIV 208 (243)
T ss_pred CCEEEEEEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEee-ccCCCCCcEEEE
Confidence 9999999998899999999998752 2 1 1479999999999 554 8999997
No 8
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=5.4e-47 Score=331.57 Aligned_cols=187 Identities=36% Similarity=0.758 Sum_probs=153.0
Q ss_pred CCCccccCCCCCCCCCCCcccCCC---CCccHHHHHHHHHHHHHHHHHhC---CCcccCHHHHHHhcCCCCCCCCCCCCh
Q 022267 98 LPKSFDARSAWPQCSTISRILDQG---HCGSCWAFGAVEALSDRFCIHFG---MNLSLSVNDLLACCGFLCGDGCDGGYP 171 (300)
Q Consensus 98 lP~~~D~R~~w~~~~~v~~v~dQg---~CgsCwAfa~~~~le~~~~i~~~---~~~~lS~q~l~dC~~~~~~~gC~GG~~ 171 (300)
||++||||+.+ +.++|+|||||| .||||||||++++||++++|+++ ..+.||+|||+||+. +.||+||++
T Consensus 1 lP~~~Dwr~~~-~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~ 76 (239)
T cd02698 1 LPKSWDWRNVN-GVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDP 76 (239)
T ss_pred CCCCcccccCC-CCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCH
Confidence 69999999973 223799999998 89999999999999999999876 468999999999986 579999999
Q ss_pred HHHHHHHHHcCccCCCCcCCCCCC-CCCC-CCCCCCCCCcccc--ccccccccccccceeeEeeeEE-eCCCHHHHHHHH
Q 022267 172 ISAWRYFVHHGVVTEECDPYFDST-GCSH-PGCEPAYPTPKCV--RKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEI 246 (300)
Q Consensus 172 ~~a~~~~~~~G~~~e~~yPY~~~~-~c~~-~~~~~~~~~~~c~--~~C~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l 246 (300)
..|++|++++|+++|++|||.... .|.. ..| .+|. ..|...+ ....+.+..|. + .++++||++|
T Consensus 77 ~~a~~~~~~~Gl~~e~~yPY~~~~~~C~~~~~~------~~c~~~~~c~~~~----~~~~~~i~~~~~~-~~~~~i~~~l 145 (239)
T cd02698 77 GGVYEYAHKHGIPDETCNPYQAKDGECNPFNRC------GTCNPFGECFAIK----NYTLYFVSDYGSV-SGRDKMMAEI 145 (239)
T ss_pred HHHHHHHHHcCcCCCCeeCCcCCCCCCcCCCCC------CCcccCccccccc----ccceEEeeeceec-CCHHHHHHHH
Confidence 999999999999999999997642 3543 222 1222 2343221 13345677776 5 4678999999
Q ss_pred HHcCCEEEEEEeccccccCCCCeEeccCCCCCCCcEEEEEEecCCCC-CcCceec
Q 022267 247 YKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDD-GEDYWVC 300 (300)
Q Consensus 247 ~~~GPV~v~i~~~~~f~~Y~~Giy~~~~~~~~~~Hav~iVGyg~~~~-g~~YWiv 300 (300)
+++|||+|+|+++++|+.|++|||+..++...++|||+||||| +++ |++||||
T Consensus 146 ~~~GPV~v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG-~~~~g~~YWii 199 (239)
T cd02698 146 YARGPISCGIMATEALENYTGGVYKEYVQDPLINHIISVAGWG-VDENGVEYWIV 199 (239)
T ss_pred HHcCCEEEEEEecccccccCCeEEccCCCCCcCCeEEEEEEEE-ecCCCCEEEEE
Confidence 9999999999998899999999999877766789999999999 554 9999997
No 9
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=4.4e-45 Score=349.62 Aligned_cols=204 Identities=25% Similarity=0.473 Sum_probs=151.8
Q ss_pred CCCCCCccccCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhCC----------CcccCHHHHHHhcCCCCCC
Q 022267 95 SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM----------NLSLSVNDLLACCGFLCGD 164 (300)
Q Consensus 95 ~~~lP~~~D~R~~w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~----------~~~lS~q~l~dC~~~~~~~ 164 (300)
..+||++||||+.|+.++.++||+|||.||||||||++++||++++|+++. ...||+|+|+||+. .++
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~--~nq 455 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF--YDQ 455 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC--CCC
Confidence 357999999999998888999999999999999999999999999998742 13799999999986 368
Q ss_pred CCCCCChHHHHHHHHHcCccCCCCcCCCCC-CCCCCCCCCCCCC---------------Cccccccccccccc--cccce
Q 022267 165 GCDGGYPISAWRYFVHHGVVTEECDPYFDS-TGCSHPGCEPAYP---------------TPKCVRKCVKKNQL--WRNSK 226 (300)
Q Consensus 165 gC~GG~~~~a~~~~~~~G~~~e~~yPY~~~-~~c~~~~~~~~~~---------------~~~c~~~C~~~~~~--~~~~~ 226 (300)
||+||++..|++|++++|+++|++|||.+. +.|....+..... .+.|...|...... .....
T Consensus 456 GC~GG~~~~A~kya~~~GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (693)
T PTZ00049 456 GCNGGFPYLVSKMAKLQGIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPA 535 (693)
T ss_pred CcCCCcHHHHHHHHHHCCCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999764 3475432111000 01111222110000 00012
Q ss_pred eeEeeeEE-eC--------CCHHHHHHHHHHcCCEEEEEEeccccccCCCCeEeccC------CC---------------
Q 022267 227 HYSISAYR-IN--------SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHIT------GD--------------- 276 (300)
Q Consensus 227 ~~~i~~~~-~~--------~~~~~ik~~l~~~GPV~v~i~~~~~f~~Y~~Giy~~~~------~~--------------- 276 (300)
.+.++.|. +. .++++||++|+++|||+|+|+++++|++|++|||+.+. |.
T Consensus 536 r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~ 615 (693)
T PTZ00049 536 RWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGW 615 (693)
T ss_pred ceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCcccccccccccccc
Confidence 23334443 32 47889999999999999999998899999999998531 21
Q ss_pred CCCCcEEEEEEecCC-CCCc--Cceec
Q 022267 277 VMGGHAVKLIGWGTS-DDGE--DYWVC 300 (300)
Q Consensus 277 ~~~~Hav~iVGyg~~-~~g~--~YWiv 300 (300)
...||||+|||||++ ++|. +||||
T Consensus 616 e~~NHAVlIVGwG~d~enG~~~~YWIV 642 (693)
T PTZ00049 616 EKVNHAIVLVGWGEEEINGKLYKYWIG 642 (693)
T ss_pred ccCceEEEEEEeccccCCCcccCEEEE
Confidence 136999999999953 2564 89997
No 10
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=8.2e-45 Score=312.09 Aligned_cols=175 Identities=34% Similarity=0.679 Sum_probs=151.2
Q ss_pred CCccccCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHhcCCCCCCCCCCCChHHHHHHH
Q 022267 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYF 178 (300)
Q Consensus 99 P~~~D~R~~w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~~~ 178 (300)
|++||||+. +.++||+|||.||+|||||++++||++++++++..++||+|+|++|... .+.+|.||++..|++++
T Consensus 1 P~~~d~r~~----~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~-~~~gC~GG~~~~a~~~~ 75 (210)
T cd02248 1 PESVDWREK----GAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYV 75 (210)
T ss_pred CCcccCCcC----CCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC-CCCCCCCCCHHHhHHHH
Confidence 789999997 6699999999999999999999999999999999999999999999872 36899999999999999
Q ss_pred HHcCccCCCCcCCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeEE-eC-CCHHHHHHHHHHcCCEEEEE
Q 022267 179 VHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVEVSF 256 (300)
Q Consensus 179 ~~~G~~~e~~yPY~~~~~c~~~~~~~~~~~~~c~~~C~~~~~~~~~~~~~~i~~~~-~~-~~~~~ik~~l~~~GPV~v~i 256 (300)
++.|+++|++|||... ...|..... ...+++..|. +. .++++||++|+++|||+++|
T Consensus 76 ~~~Gi~~e~~yPY~~~-----------------~~~C~~~~~----~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~ 134 (210)
T cd02248 76 KNGGLASESDYPYTGK-----------------DGTCKYNSS----KVGAKITGYSNVPPGDEEALKAALANYGPVSVAI 134 (210)
T ss_pred HHCCcCccccCCccCC-----------------CCCccCCCC----cccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEE
Confidence 9999999999999653 123332221 3456777877 54 35789999999999999999
Q ss_pred EeccccccCCCCeEeccCC-CCCCCcEEEEEEecCCCCCcCceec
Q 022267 257 TVYEDFAHYKSGVYKHITG-DVMGGHAVKLIGWGTSDDGEDYWVC 300 (300)
Q Consensus 257 ~~~~~f~~Y~~Giy~~~~~-~~~~~Hav~iVGyg~~~~g~~YWiv 300 (300)
.+.++|+.|++|||..+++ ...++|||+||||| ++.|.+||||
T Consensus 135 ~~~~~f~~y~~Giy~~~~~~~~~~~Hav~iVGy~-~~~~~~ywiv 178 (210)
T cd02248 135 DASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYG-TENGVDYWIV 178 (210)
T ss_pred ecCcccccCCCCceeCCCCCCCcCCEEEEEEEEe-ecCCceEEEE
Confidence 9988999999999998766 45689999999999 7778999997
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=2.6e-44 Score=340.98 Aligned_cols=189 Identities=25% Similarity=0.494 Sum_probs=148.5
Q ss_pred CCCCCCccccCCCCCCCCCCCcccCCCC---CccHHHHHHHHHHHHHHHHHhC------CCcccCHHHHHHhcCCCCCCC
Q 022267 95 SLKLPKSFDARSAWPQCSTISRILDQGH---CGSCWAFGAVEALSDRFCIHFG------MNLSLSVNDLLACCGFLCGDG 165 (300)
Q Consensus 95 ~~~lP~~~D~R~~w~~~~~v~~v~dQg~---CgsCwAfa~~~~le~~~~i~~~------~~~~lS~q~l~dC~~~~~~~g 165 (300)
..+||++||||+.+ +.+.|+||||||. ||||||||++++||++++|+++ ..+.||+|+|+||+. .++|
T Consensus 202 ~~~LP~sfDWR~~g-g~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~--~n~G 278 (548)
T PTZ00364 202 GDPPPAAWSWGDVG-GASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ--YGQG 278 (548)
T ss_pred ccCCCCccccCcCC-CCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC--CCCC
Confidence 46799999999972 3347999999999 9999999999999999999884 468999999999986 3689
Q ss_pred CCCCChHHHHHHHHHcCccCCCCc--CCCCCCCCCCCCCCCCCCCcccccccccccc--ccccceeeEeeeEE-eCCCHH
Q 022267 166 CDGGYPISAWRYFVHHGVVTEECD--PYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQ--LWRNSKHYSISAYR-INSDPE 240 (300)
Q Consensus 166 C~GG~~~~a~~~~~~~G~~~e~~y--PY~~~~~c~~~~~~~~~~~~~c~~~C~~~~~--~~~~~~~~~i~~~~-~~~~~~ 240 (300)
|+||++..|++|++++|+++|++| ||.+.++ .. + .|+.... .+.......+.+|. +..+++
T Consensus 279 CdGG~p~~A~~yi~~~GI~tE~dY~~PY~~~dg-~~---------~----~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~ 344 (548)
T PTZ00364 279 CAGGFPEEVGKFAETFGILTTDSYYIPYDSGDG-VE---------R----ACKTRRPSRRYYFTNYGPLGGYYGAVTDPD 344 (548)
T ss_pred CCCCcHHHHHHHHHhCCcccccccCCCCCCCCC-CC---------C----CCCCCcccceeeeeeeEEecceeecCCcHH
Confidence 999999999999999999999999 9965422 10 1 2222110 01111223455554 445788
Q ss_pred HHHHHHHHcCCEEEEEEeccccccCCCCeEecc---------CC----------CCCCCcEEEEEEecCCCCCcCceec
Q 022267 241 DIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHI---------TG----------DVMGGHAVKLIGWGTSDDGEDYWVC 300 (300)
Q Consensus 241 ~ik~~l~~~GPV~v~i~~~~~f~~Y~~Giy~~~---------~~----------~~~~~Hav~iVGyg~~~~g~~YWiv 300 (300)
+||.+|+++|||+|+|+++++|+.|++|||.+. ++ ...+||||+|||||++++|++||||
T Consensus 345 ~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIV 423 (548)
T PTZ00364 345 EIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLV 423 (548)
T ss_pred HHHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEE
Confidence 999999999999999999889999999998631 11 1247999999999955689999997
No 12
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=8.9e-42 Score=294.43 Aligned_cols=179 Identities=42% Similarity=0.771 Sum_probs=145.6
Q ss_pred CCCccccCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHh-CCCcccCHHHHHHhcCCCCCCCCCCCChHHHHH
Q 022267 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHF-GMNLSLSVNDLLACCGFLCGDGCDGGYPISAWR 176 (300)
Q Consensus 98 lP~~~D~R~~w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~-~~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~ 176 (300)
||++||||+.+ +.++||+|||.||+|||||+++++|++++++. ...++||+|+|++|.. ..+.+|+||++..|++
T Consensus 1 lP~~~D~r~~~---~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~ 76 (219)
T PF00112_consen 1 LPKSFDWRDKG---GRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALK 76 (219)
T ss_dssp STSSEEGGGTT---TCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHH
T ss_pred CCCCEecccCC---CCcCccccCCcccccccchhccceecccccccccccccccccccccccc-ccccccccCcccccce
Confidence 79999999962 35999999999999999999999999999999 7999999999999987 3457999999999999
Q ss_pred HHHH-cCccCCCCcCCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeEE-eC-CCHHHHHHHHHHcCCEE
Q 022267 177 YFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVE 253 (300)
Q Consensus 177 ~~~~-~G~~~e~~yPY~~~~~c~~~~~~~~~~~~~c~~~C~~~~~~~~~~~~~~i~~~~-~~-~~~~~ik~~l~~~GPV~ 253 (300)
++++ +|+++|++|||.+.. . ..|...... ...+++..|. +. .+.++||++|+++|||+
T Consensus 77 ~~~~~~Gi~~e~~~pY~~~~------------~----~~c~~~~~~---~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~ 137 (219)
T PF00112_consen 77 YIKNNNGIVTEEDYPYNGNE------------N----PTCKSKKSN---SYYVKIKGYGKVKDNDIEDIKKALMKYGPVV 137 (219)
T ss_dssp HHHHHTSBEBTTTS--SSSS------------S----CSSCHSGGG---EEEBEESEEEEEESTCHHHHHHHHHHHSSEE
T ss_pred eecccCcccccccccccccc------------c----ccccccccc---cccccccccccccccchhHHHHHHhhCceee
Confidence 9999 899999999996431 0 234433210 1245677777 54 36899999999999999
Q ss_pred EEEEecc-ccccCCCCeEeccCC-CCCCCcEEEEEEecCCCCCcCceec
Q 022267 254 VSFTVYE-DFAHYKSGVYKHITG-DVMGGHAVKLIGWGTSDDGEDYWVC 300 (300)
Q Consensus 254 v~i~~~~-~f~~Y~~Giy~~~~~-~~~~~Hav~iVGyg~~~~g~~YWiv 300 (300)
++|.+.+ +|+.|++|||..+.+ ...++|||+||||| ++.|++||||
T Consensus 138 ~~~~~~~~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~-~~~~~~~wiv 185 (219)
T PF00112_consen 138 ASIDVSSEDFQNYKSGIYDPPDCSNESGGHAVLIVGYD-DENGKGYWIV 185 (219)
T ss_dssp EEEEEESHHHHTEESSEECSTSSSSSSEEEEEEEEEEE-EETTEEEEEE
T ss_pred eeeeccccccccccceeeeccccccccccccccccccc-cccceeeEee
Confidence 9999987 699999999998754 35689999999999 7779999996
No 13
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=299.96 Aligned_cols=264 Identities=31% Similarity=0.615 Sum_probs=205.4
Q ss_pred hccccccChHHHHHHHHcCCCCceEEecCCCCCCCCHHH-HHHhhCCCCCCCCCCCCCCcc-ccCCCCCCCCccccCCCC
Q 022267 31 LKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQ-FKHLLGVKPTPKGLLLGVPVK-THDKSLKLPKSFDARSAW 108 (300)
Q Consensus 31 ~~~~~~i~~~~~i~~~N~~~~~~~~~~~n~~fsd~t~~E-f~~~~~~~~~~~~~~~~~~~~-~~~~~~~lP~~~D~R~~w 108 (300)
.+....+..+++||++|+ .+.+|.++..++|..||.++ |+..||+.+++.....+.... ..+...+||+.||.|++|
T Consensus 141 Cdq~~CLv~Pd~iE~in~-G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNEi~~~l~p~~~LPE~F~As~KW 219 (470)
T KOG1544|consen 141 CDQEPCLVDPDMIEAINQ-GNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNEIYTVLNPGEVLPEAFEASEKW 219 (470)
T ss_pred cCCceeecCHHHHHHHhc-CCccccccchhhhhcccccccceeeecccCchhhhhhHHhHhhccCcccccchhhhhhhcC
Confidence 345667889999999999 78999999888999999877 666888877665544332221 123346899999999999
Q ss_pred CCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhC--CCcccCHHHHHHhcCCCCCCCCCCCChHHHHHHHHHcCccCC
Q 022267 109 PQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTE 186 (300)
Q Consensus 109 ~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~~~G~~~e 186 (300)
++ ++.++.|||+|+++|||+++++...+++|.+. ....||+|+|++|.. ....||.||+++.|+=||++.|++..
T Consensus 220 p~--liH~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~-h~q~GC~gG~lDRAWWYlRKrGvVsd 296 (470)
T KOG1544|consen 220 PN--LIHEPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDT-HQQQGCRGGRLDRAWWYLRKRGVVSD 296 (470)
T ss_pred Cc--cccCccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhh-hhhccCccCcccchheeeeccccccc
Confidence 95 49999999999999999999999999999875 568899999999987 44689999999999999999999999
Q ss_pred CCcCCCCCCCCCCCCCCCC-----CCCccccccccccccccccceeeEe-eeEEeCCCHHHHHHHHHHcCCEEEEEEecc
Q 022267 187 ECDPYFDSTGCSHPGCEPA-----YPTPKCVRKCVKKNQLWRNSKHYSI-SAYRINSDPEDIMAEIYKNGPVEVSFTVYE 260 (300)
Q Consensus 187 ~~yPY~~~~~c~~~~~~~~-----~~~~~c~~~C~~~~~~~~~~~~~~i-~~~~~~~~~~~ik~~l~~~GPV~v~i~~~~ 260 (300)
.||||++.+.-.++.|.-. .....-...|....+ ....+|+. ..|.+++++++|+++||++|||.+.|.|.+
T Consensus 297 hCYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~--~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHE 374 (470)
T KOG1544|consen 297 HCYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYV--NSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHE 374 (470)
T ss_pred ccccccCCCCCCCCCceeeccccCcccccccCcCCCccc--ccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhh
Confidence 9999976544444444322 111111223554432 11244554 456699999999999999999999999999
Q ss_pred ccccCCCCeEeccCCC--------CCCCcEEEEEEecCCC--CC--cCceec
Q 022267 261 DFAHYKSGVYKHITGD--------VMGGHAVKLIGWGTSD--DG--EDYWVC 300 (300)
Q Consensus 261 ~f~~Y~~Giy~~~~~~--------~~~~Hav~iVGyg~~~--~g--~~YWiv 300 (300)
+|+.|++|||.+.... ..+.|+|.|.|||++. +| .+|||+
T Consensus 375 DFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~a 426 (470)
T KOG1544|consen 375 DFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTA 426 (470)
T ss_pred hhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEe
Confidence 9999999999876421 2578999999999422 23 579985
No 14
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=6.4e-39 Score=267.36 Aligned_cols=138 Identities=44% Similarity=0.905 Sum_probs=120.4
Q ss_pred CCCccccCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHhcCCCCCCCCCCCChHHHHHH
Q 022267 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY 177 (300)
Q Consensus 98 lP~~~D~R~~w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~~ 177 (300)
||++||||+. +.++||+|||.||+|||||+++++|++++++++..++||+|+|++|... .+.||+||++..|++|
T Consensus 1 lP~~~D~R~~----~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~ 75 (174)
T smart00645 1 LPESFDWRKK----GAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEY 75 (174)
T ss_pred CCCcCccccc----CCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHH
Confidence 6999999997 4699999999999999999999999999999998999999999999873 3569999999999999
Q ss_pred HHHc-CccCCCCcCCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeEEeCCCHHHHHHHHHHcCCEEEEE
Q 022267 178 FVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSF 256 (300)
Q Consensus 178 ~~~~-G~~~e~~yPY~~~~~c~~~~~~~~~~~~~c~~~C~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~~GPV~v~i 256 (300)
++++ |+++|++|||. . ++.+
T Consensus 76 ~~~~~Gi~~e~~~PY~--------------------------------~---------------------------~~~~ 96 (174)
T smart00645 76 IKKNGGLETESCYPYT--------------------------------G---------------------------SVAI 96 (174)
T ss_pred HHHcCCcccccccCcc--------------------------------c---------------------------EEEE
Confidence 9998 99999999991 0 5556
Q ss_pred EeccccccCCCCeEecc-CCCCCCCcEEEEEEecCCCCCcCceec
Q 022267 257 TVYEDFAHYKSGVYKHI-TGDVMGGHAVKLIGWGTSDDGEDYWVC 300 (300)
Q Consensus 257 ~~~~~f~~Y~~Giy~~~-~~~~~~~Hav~iVGyg~~~~g~~YWiv 300 (300)
.+. +|++|++|||+.+ +....++|+|+|||||++++|++||||
T Consensus 97 ~~~-~f~~Y~~Gi~~~~~~~~~~~~Hav~ivGyg~~~~g~~yWii 140 (174)
T smart00645 97 DAS-DFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEENGKDYWIV 140 (174)
T ss_pred Ecc-cccCCcCeEECCCCCCCCcccEEEEEEEEeecCCCeeEEEE
Confidence 554 6999999999885 433447999999999943389999997
No 15
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=4.5e-38 Score=271.91 Aligned_cols=177 Identities=32% Similarity=0.539 Sum_probs=142.7
Q ss_pred ccccCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhC--CCcccCHHHHHHhcCCCC---CCCCCCCChHHHH
Q 022267 101 SFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLC---GDGCDGGYPISAW 175 (300)
Q Consensus 101 ~~D~R~~w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~~~~---~~gC~GG~~~~a~ 175 (300)
++|||+. + ++||+|||.||+|||||+++++|++++++.+ ..++||+|+|++|..... ..+|.||++..++
T Consensus 1 ~~d~r~~----~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~ 75 (223)
T cd02619 1 SVDLRPL----R-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSAL 75 (223)
T ss_pred CCcchhc----C-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHH
Confidence 4899987 5 8999999999999999999999999999988 889999999999987322 2699999999999
Q ss_pred H-HHHHcCccCCCCcCCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeEE-eC-CCHHHHHHHHHHcCCE
Q 022267 176 R-YFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPV 252 (300)
Q Consensus 176 ~-~~~~~G~~~e~~yPY~~~~~c~~~~~~~~~~~~~c~~~C~~~~~~~~~~~~~~i~~~~-~~-~~~~~ik~~l~~~GPV 252 (300)
. +++++|+++|++|||..... .|...|.. ......+++..|. +. .++++||++|+++|||
T Consensus 76 ~~~~~~~Gi~~e~~~Py~~~~~-------------~~~~~~~~----~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv 138 (223)
T cd02619 76 LKLVALKGIPPEEDYPYGAESD-------------GEEPKSEA----ALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPV 138 (223)
T ss_pred HHHHHHcCCCccccCCCCCCCC-------------CCCCCCcc----chhhcceeecceeEeCchhHHHHHHHHHHCCCE
Confidence 8 88999999999999965411 11111100 0113446677777 44 4578999999999999
Q ss_pred EEEEEeccccccCCCCeEe------ccCCCCCCCcEEEEEEecCCCC--CcCceec
Q 022267 253 EVSFTVYEDFAHYKSGVYK------HITGDVMGGHAVKLIGWGTSDD--GEDYWVC 300 (300)
Q Consensus 253 ~v~i~~~~~f~~Y~~Giy~------~~~~~~~~~Hav~iVGyg~~~~--g~~YWiv 300 (300)
+++|.+.++|..|++|+|. ..++...++|||+||||| ++. +++||||
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~-~~~~~~~~~~i~ 193 (223)
T cd02619 139 VAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYD-DNYVEGKGAFIV 193 (223)
T ss_pred EEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeec-CCCCCCCCEEEE
Confidence 9999999999999999873 223445689999999999 665 8899996
No 16
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=289.47 Aligned_cols=184 Identities=22% Similarity=0.363 Sum_probs=130.7
Q ss_pred CCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHhcCCCCCCCCCCCC-hHHHHHHHHHcC-ccC
Q 022267 108 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGY-PISAWRYFVHHG-VVT 185 (300)
Q Consensus 108 w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~~~gC~GG~-~~~a~~~~~~~G-~~~ 185 (300)
++.|....||||||.||+|||||+++++|++++|+++..+.||+|+|+||+....+.||.||+ +..++.|++++| +++
T Consensus 538 ~~sC~s~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLpt 617 (1004)
T PTZ00462 538 ENNCISKIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPA 617 (1004)
T ss_pred CCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcc
Confidence 367766789999999999999999999999999999999999999999998644467999997 556669998885 889
Q ss_pred CCCcCCCC--C-CCCCCCCCCCCCCCccccccccccccc--c--ccceeeEeeeEE-eCC-----C----HHHHHHHHHH
Q 022267 186 EECDPYFD--S-TGCSHPGCEPAYPTPKCVRKCVKKNQL--W--RNSKHYSISAYR-INS-----D----PEDIMAEIYK 248 (300)
Q Consensus 186 e~~yPY~~--~-~~c~~~~~~~~~~~~~c~~~C~~~~~~--~--~~~~~~~i~~~~-~~~-----~----~~~ik~~l~~ 248 (300)
|++|||.. . +.|..... .. ..|...... + .......+.+|. +.. + +++||++|++
T Consensus 618 ESdYPYt~k~~~g~Cp~~~~-----~w---~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~ 689 (1004)
T PTZ00462 618 DSNYLYNYTKVGEDCPDEED-----HW---MNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMN 689 (1004)
T ss_pred cccCCCccCCCCCCCCCCcc-----cc---cccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHh
Confidence 99999964 2 11321100 00 000000000 0 001123344554 322 1 4689999999
Q ss_pred cCCEEEEEEeccccccC-CCCeEecc-CCCCCCCcEEEEEEecCC---C-CCcCceec
Q 022267 249 NGPVEVSFTVYEDFAHY-KSGVYKHI-TGDVMGGHAVKLIGWGTS---D-DGEDYWVC 300 (300)
Q Consensus 249 ~GPV~v~i~~~~~f~~Y-~~Giy~~~-~~~~~~~Hav~iVGyg~~---~-~g~~YWiv 300 (300)
+|||+|+|++. +|+.| ++|||... |+...++|||+|||||++ + +|++||||
T Consensus 690 kGPVaV~IdAs-df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIV 746 (1004)
T PTZ00462 690 KGSVIAYIKAE-NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIV 746 (1004)
T ss_pred cCCEEEEEEee-hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEE
Confidence 99999999985 68888 48987655 444457999999999953 1 26799997
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.9e-18 Score=151.77 Aligned_cols=167 Identities=27% Similarity=0.340 Sum_probs=105.3
Q ss_pred CCCCCccccCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHhcCCCCCCCC-----CCCC
Q 022267 96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGC-----DGGY 170 (300)
Q Consensus 96 ~~lP~~~D~R~~w~~~~~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~~~gC-----~GG~ 170 (300)
..+|+.||||+. |.|+||||||.||+||||+++++||+.+.-.. ...+|+-.+..-.......+| +||.
T Consensus 97 ~s~~~~fd~r~~----g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~ 170 (372)
T COG4870 97 ASLPSYFDRRDE----GKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGN 170 (372)
T ss_pred ccchhheeeecc----CCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCc
Confidence 458999999998 88999999999999999999999999964433 455666555443221122333 3788
Q ss_pred hHHHHHHHHHc-CccCCCCcCCCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeEE--e--CCCHHHHHHH
Q 022267 171 PISAWRYFVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR--I--NSDPEDIMAE 245 (300)
Q Consensus 171 ~~~a~~~~~~~-G~~~e~~yPY~~~~~c~~~~~~~~~~~~~c~~~C~~~~~~~~~~~~~~i~~~~--~--~~~~~~ik~~ 245 (300)
...+..|+.+. |.+.|.+.||..... ..+ .|.+. .++.....+. . ..+...||++
T Consensus 171 ~~m~~a~l~e~sgpv~et~d~y~~~s~----------~~~----~~~p~------~k~~~~~~~i~~~~~~LdnG~i~~~ 230 (372)
T COG4870 171 ADMSAAYLTEWSGPVYETDDPYSENSY----------FSP----TNLPV------TKHVQEAQIIPSRKKYLDNGNIKAM 230 (372)
T ss_pred cccccccccccCCcchhhcCccccccc----------cCC----cCCch------hhccccceecccchhhhcccchHHH
Confidence 88787888776 899999999954310 000 11111 1111111111 1 1233458888
Q ss_pred HHHcCCEEEEEEec-cccccCCCCeEeccCCCCCCCcEEEEEEec
Q 022267 246 IYKNGPVEVSFTVY-EDFAHYKSGVYKHITGDVMGGHAVKLIGWG 289 (300)
Q Consensus 246 l~~~GPV~v~i~~~-~~f~~Y~~Giy~~~~~~~~~~Hav~iVGyg 289 (300)
+..+|-+..+|.+. ..+....-+.|..... ...+|||+||||+
T Consensus 231 ~~~yg~~s~~~~id~~~~~~~~~~~~~~~s~-~~~gHAv~iVGyD 274 (372)
T COG4870 231 FGFYGAVSSSMYIDATNSLGICIPYPYVDSG-ENWGHAVLIVGYD 274 (372)
T ss_pred HhhhccccceeEEecccccccccCCCCCCcc-ccccceEEEEecc
Confidence 98999888777652 1222222233433333 4579999999999
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.47 E-value=3.5e-13 Score=126.16 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=63.8
Q ss_pred CCcccCCCCCccHHHHHHHHHHHHHHHHHh-CCCcccCHHHHHH----------------hcCC--C--------CCCCC
Q 022267 114 ISRILDQGHCGSCWAFGAVEALSDRFCIHF-GMNLSLSVNDLLA----------------CCGF--L--------CGDGC 166 (300)
Q Consensus 114 v~~v~dQg~CgsCwAfa~~~~le~~~~i~~-~~~~~lS~q~l~d----------------C~~~--~--------~~~gC 166 (300)
..||+||++-|-||.||+...|++.+..+. ...++||+.++.- +... . ...-.
T Consensus 54 ~~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~ 133 (437)
T cd00585 54 TEPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQN 133 (437)
T ss_pred CCCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcC
Confidence 358999999999999999999999887754 4789999877654 3210 0 13456
Q ss_pred CCCChHHHHHHHHHcCccCCCCcCCC
Q 022267 167 DGGYPISAWRYFVHHGVVTEECDPYF 192 (300)
Q Consensus 167 ~GG~~~~a~~~~~~~G~~~e~~yPY~ 192 (300)
+||.-..+.+.+++.|++..+.||-+
T Consensus 134 DGGqw~m~~~li~KYGvVPk~~~pet 159 (437)
T cd00585 134 DGGQWDMLVNLIEKYGLVPKSVMPES 159 (437)
T ss_pred CCCchHHHHHHHHHcCCCcccccCCC
Confidence 89999999999999999999999963
No 19
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=98.48 E-value=9.8e-08 Score=64.52 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=38.5
Q ss_pred cchhhhccccccChHH--HHHHHHcCCCCceEEecCCCCCCCCHHHH
Q 022267 26 GVVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQF 70 (300)
Q Consensus 26 ~~~~~~~~~~~i~~~~--~i~~~N~~~~~~~~~~~n~~fsd~t~~Ef 70 (300)
.+..|...|+.+|.++ .|+++|++++.+|++++| +|+|||++||
T Consensus 13 ~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N-~fsD~t~eEf 58 (58)
T PF08246_consen 13 KSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLN-QFSDMTPEEF 58 (58)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SS-TTTTSSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCc-cccCcChhhC
Confidence 4778888899999995 699999768899999999 9999999997
No 20
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=97.81 E-value=6.3e-06 Score=55.24 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=34.4
Q ss_pred chhhhccccccChHH--HHHHHHcCCCCceEEecCCCCCCCCHHH
Q 022267 27 VVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQ 69 (300)
Q Consensus 27 ~~~~~~~~~~i~~~~--~i~~~N~~~~~~~~~~~n~~fsd~t~~E 69 (300)
+..|...|+.+|.++ .|+.+|..+..+|++++| +|+|||++|
T Consensus 14 ~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N-~fsDlt~eE 57 (57)
T smart00848 14 SEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLN-QFADLTNEE 57 (57)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCc-ccccCCCCC
Confidence 445556678899885 699999866689999999 999999876
No 21
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=97.80 E-value=2.8e-05 Score=48.25 Aligned_cols=39 Identities=44% Similarity=0.756 Sum_probs=26.8
Q ss_pred ChHHHHHHHHcCCCCceEEecCCCCCCCCHHHHHHhhCCCCC
Q 022267 38 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPT 79 (300)
Q Consensus 38 ~~~~~i~~~N~~~~~~~~~~~n~~fsd~t~~Ef~~~~~~~~~ 79 (300)
+.+++|+.+|++ +.+|++|.| |.+.+.+++++++|..+.
T Consensus 1 Lsde~I~~IN~~-~~tWkAG~N--F~~~~~~~ik~LlGv~~~ 39 (41)
T PF08127_consen 1 LSDEFIDYINSK-NTTWKAGRN--FENTSIEYIKRLLGVLPD 39 (41)
T ss_dssp S-HHHHHHHHHC-T-SEEE------SSB-HHHHHHCS-B-TT
T ss_pred CCHHHHHHHHcC-CCcccCCCC--CCCCCHHHHHHHcCCCCC
Confidence 357899999996 899999999 799999999999998654
No 22
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=97.74 E-value=5.9e-05 Score=71.26 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=51.7
Q ss_pred CCcccCCCCCccHHHHHHHHHHHHHHHHHhC-CCcccCHHHHH----------------HhcCCC----------CCCCC
Q 022267 114 ISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLL----------------ACCGFL----------CGDGC 166 (300)
Q Consensus 114 v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~-~~~~lS~q~l~----------------dC~~~~----------~~~gC 166 (300)
..||.||++-|-||.||+...++..+..+.+ ...+||+.++. ++.... .....
T Consensus 55 ~~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~ 134 (438)
T PF03051_consen 55 TGPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVS 134 (438)
T ss_dssp S-S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-
T ss_pred cCCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCC
Confidence 3599999999999999999999999888776 88999998864 332200 02346
Q ss_pred CCCChHHHHHHHHHcCccCCCCcCCC
Q 022267 167 DGGYPISAWRYFVHHGVVTEECDPYF 192 (300)
Q Consensus 167 ~GG~~~~a~~~~~~~G~~~e~~yPY~ 192 (300)
+||.-..+.+-++++|++..+.||-+
T Consensus 135 DGGqw~~~~nli~KYGvVPk~~mpet 160 (438)
T PF03051_consen 135 DGGQWDMVVNLIKKYGVVPKSVMPET 160 (438)
T ss_dssp S-B-HHHHHHHHHHH---BGGGSTTG
T ss_pred CCCchHHHHHHHHHcCcCcHhhCCCC
Confidence 79999999999999999999999974
No 23
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=95.69 E-value=0.093 Score=43.06 Aligned_cols=111 Identities=18% Similarity=0.228 Sum_probs=63.2
Q ss_pred CCCCCccHHHHHHHHHHHHHHH--------HHhCCCcccCHHHHHHhcCCCCCCCCCCCChHHHHHHHHHcCccCCCCcC
Q 022267 119 DQGHCGSCWAFGAVEALSDRFC--------IHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDP 190 (300)
Q Consensus 119 dQg~CgsCwAfa~~~~le~~~~--------i~~~~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~~~G~~~e~~yP 190 (300)
.||.-+=|-+|+.++.|-.... |.+...+.+|+++|.+++- .+...++|++..|...
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~----------~~~~~i~y~ks~g~~~----- 82 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL----------TPNQMIKYAKSQGRNP----- 82 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B-----------HHHHHHHHHHTTEEE-----
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC----------CHHHHHHHHHHcCcch-----
Confidence 5788888999999988765521 1112346677777776643 3567788876654321
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccccccccccceeeEeeeEE-eCCCHHHHHHHHHHcCCEEEEEEeccccccCCCCe
Q 022267 191 YFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGV 269 (300)
Q Consensus 191 Y~~~~~c~~~~~~~~~~~~~c~~~C~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l~~~GPV~v~i~~~~~f~~Y~~Gi 269 (300)
.+. -..+-+++++.+-++-|+.+..+.-+ ...|
T Consensus 83 -----------------------------------------~~~n~~~s~~eV~~~~~~nk~i~i~~~~v~----~~~~- 116 (175)
T PF05543_consen 83 -----------------------------------------QYNNRMPSFDEVKKLIDNNKGIAILADRVE----QTNG- 116 (175)
T ss_dssp -----------------------------------------EEECS---HHHHHHHHHTT-EEEEEEEETT----SCTT-
T ss_pred -----------------------------------------hHhcCCCCHHHHHHHHHcCCCeEEEecccc----cCCC-
Confidence 111 11245889999988888888776421 1111
Q ss_pred EeccCCCCCCCcEEEEEEecCCCCCcCc
Q 022267 270 YKHITGDVMGGHAVKLIGWGTSDDGEDY 297 (300)
Q Consensus 270 y~~~~~~~~~~Hav~iVGyg~~~~g~~Y 297 (300)
...+||++||||-.-.+|.+|
T Consensus 117 -------~~~gHAlavvGya~~~~g~~~ 137 (175)
T PF05543_consen 117 -------PHAGHALAVVGYAKPNNGQKT 137 (175)
T ss_dssp -------B--EEEEEEEEEEEETTSEEE
T ss_pred -------CccceeEEEEeeeecCCCCeE
Confidence 235899999999843555554
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=95.19 E-value=0.18 Score=39.32 Aligned_cols=48 Identities=31% Similarity=0.385 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHcCCEEEEEEeccccccCCCCeEeccCCCCCCCcEEEEEEec
Q 022267 236 NSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWG 289 (300)
Q Consensus 236 ~~~~~~ik~~l~~~GPV~v~i~~~~~f~~Y~~Giy~~~~~~~~~~Hav~iVGyg 289 (300)
..+.+.|+++|.+..||++.+..... ...++.+.. ....|.|+|+||+
T Consensus 86 ~~~~~~i~~~i~~G~Pvi~~~~~~~~--~~~~~~~~~----~~~~H~vvi~Gy~ 133 (144)
T PF13529_consen 86 DASFDDIKQEIDAGRPVIVSVNSGWR--PPNGDGYDG----TYGGHYVVIIGYD 133 (144)
T ss_dssp TS-HHHHHHHHHTT--EEEEEETTSS----TTEEEEE-----TTEEEEEEEEE-
T ss_pred CCcHHHHHHHHHCCCcEEEEEEcccc--cCCCCCcCC----CcCCEEEEEEEEe
Confidence 34568999999888899999984210 001122211 1268999999999
No 25
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=94.77 E-value=0.06 Score=48.57 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=52.7
Q ss_pred cccCCCCCccHHHHHHHHHHHHHHHHHhC-CCcccCHHHH----------------HHhcCC----------CCCCCCCC
Q 022267 116 RILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDL----------------LACCGF----------LCGDGCDG 168 (300)
Q Consensus 116 ~v~dQg~CgsCwAfa~~~~le~~~~i~~~-~~~~lS~q~l----------------~dC~~~----------~~~~gC~G 168 (300)
||.||...|-||-||+...+--.+.-.-+ +...||..++ +..... -...--+|
T Consensus 59 ~vtNQk~SGRCWmFAAlNtfRhk~~~el~le~fElSQaytfFwDKlEKaN~FleqIi~tadq~ldsRlv~~LL~~PqqDG 138 (444)
T COG3579 59 KVTNQKQSGRCWMFAALNTFRHKLISELKLEDFELSQAYTFFWDKLEKANWFLEQIIETADQELDSRLVSFLLATPQQDG 138 (444)
T ss_pred ccccccccceehHHHHHHHHHHHHHHhcCcceeehhhHHHHHHHHHHHhhHHHHHHHhhcccchHHHHHHHHHcCccccC
Confidence 89999999999999999876444333333 6677775444 222110 01223467
Q ss_pred CChHHHHHHHHHcCccCCCCcCCC
Q 022267 169 GYPISAWRYFVHHGVVTEECDPYF 192 (300)
Q Consensus 169 G~~~~a~~~~~~~G~~~e~~yPY~ 192 (300)
|--......+.+.|++.-++||-.
T Consensus 139 GQwdM~v~l~eKYGvVpK~~ypes 162 (444)
T COG3579 139 GQWDMFVSLFEKYGVVPKSVYPES 162 (444)
T ss_pred chHHHHHHHHHHhCCCchhhcccc
Confidence 877777778888999999999973
No 26
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=91.71 E-value=0.31 Score=46.43 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCEEEEEEeccccccCCCCeEeccC---------------------CCCCCCcEEEEEEecCCCCCc-Cce
Q 022267 241 DIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHIT---------------------GDVMGGHAVKLIGWGTSDDGE-DYW 298 (300)
Q Consensus 241 ~ik~~l~~~GPV~v~i~~~~~f~~Y~~Giy~~~~---------------------~~~~~~Hav~iVGyg~~~~g~-~YW 298 (300)
.+...|.+.-||..+-+|.. +..-+.||.+... .....+|||+|||.+.+++|. .+|
T Consensus 301 ~~i~~Lk~G~~VwfgcDV~k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~p~~w 379 (438)
T PF03051_consen 301 AAIKSLKAGYPVWFGCDVGK-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGKPVRW 379 (438)
T ss_dssp HHHHHHHTT--EEEEEETTT-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSSEEEE
T ss_pred HHHHHHHcCCcEEEeccCCc-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCCeeEE
Confidence 44556666779999999975 4566889875321 113358999999999767886 589
Q ss_pred ec
Q 022267 299 VC 300 (300)
Q Consensus 299 iv 300 (300)
.|
T Consensus 380 kV 381 (438)
T PF03051_consen 380 KV 381 (438)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=88.84 E-value=1 Score=40.78 Aligned_cols=46 Identities=20% Similarity=0.451 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCEEEEEEeccccccCCCCeEeccCCCCCCCcEEEEEEecCCC
Q 022267 240 EDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSD 292 (300)
Q Consensus 240 ~~ik~~l~~~GPV~v~i~~~~~f~~Y~~Giy~~~~~~~~~~Hav~iVGyg~~~ 292 (300)
+.|++.|.++.||.+.++.+ +.-|...-| .....+|.|+|+||+ ++
T Consensus 79 ~~l~~~l~~g~pv~~~~D~~--~lpy~~~~~----~~~~~~H~i~v~G~d-~~ 124 (317)
T PF14399_consen 79 EELKEALDAGRPVIVWVDMY--YLPYRPNYY----KKHHADHYIVVYGYD-EE 124 (317)
T ss_pred HHHHHHHhCCCceEEEeccc--cCCCCcccc----ccccCCcEEEEEEEe-CC
Confidence 47888887766999998874 233433222 222358999999999 44
No 28
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=88.82 E-value=0.46 Score=42.92 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=56.3
Q ss_pred CCcccCCCCCccHHHHHHHHHHHHHHHHHhC-CCcccCHHHHHH--------------------hcCCC--------CCC
Q 022267 114 ISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLA--------------------CCGFL--------CGD 164 (300)
Q Consensus 114 v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~-~~~~lS~q~l~d--------------------C~~~~--------~~~ 164 (300)
-+||.||..-|-||.|+....+---+..+-+ ....||..+|.- |-..+ .+.
T Consensus 62 ~~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP 141 (457)
T KOG4128|consen 62 RQPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNP 141 (457)
T ss_pred CcccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCC
Confidence 3699999999999999999876544433333 567888777631 22100 123
Q ss_pred CCCCCChHHHHHHHHHcCccCCCCcCCC
Q 022267 165 GCDGGYPISAWRYFVHHGVVTEECDPYF 192 (300)
Q Consensus 165 gC~GG~~~~a~~~~~~~G~~~e~~yPY~ 192 (300)
.-+||.-..-.+.+++.|+....|||-.
T Consensus 142 ~~DGGqw~MfvNlVkKYGviPKkcy~~s 169 (457)
T KOG4128|consen 142 VPDGGQWQMFVNLVKKYGVIPKKCYLHS 169 (457)
T ss_pred CCCCchHHHHHHHHHHhCCCcHHhcccc
Confidence 3468888888888999999999999753
No 29
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=87.20 E-value=12 Score=30.35 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHcCCEEEEEEeccccccCCCCeEeccCCCCCCCcEEEEEEec
Q 022267 238 DPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWG 289 (300)
Q Consensus 238 ~~~~ik~~l~~~GPV~v~i~~~~~f~~Y~~Giy~~~~~~~~~~Hav~iVGyg 289 (300)
..+.+...|.++||+.++.....+ ....|+++|.|-.
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~~---------------~~~~H~~ViTGI~ 133 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPGD---------------SWVAHASVITGID 133 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCC---------------cceeeEEEEEeec
Confidence 458899999999999999655311 1135888888866
No 30
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=81.83 E-value=3.9 Score=34.96 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHcCCEEEEEEeccccc--cCCCCeEec---c-CC--CCCCCcEEEEEEecC
Q 022267 237 SDPEDIMAEIYKNGPVEVSFTVYEDFA--HYKSGVYKH---I-TG--DVMGGHAVKLIGWGT 290 (300)
Q Consensus 237 ~~~~~ik~~l~~~GPV~v~i~~~~~f~--~Y~~Giy~~---~-~~--~~~~~Hav~iVGyg~ 290 (300)
-..++|...|.++||++|-++..- +. .-+.-.... . .+ ....+|-|+|+||+.
T Consensus 111 vs~~ei~~hl~~g~~aIvLVd~~~-L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~ 171 (212)
T PF09778_consen 111 VSIQEIIEHLSSGGPAIVLVDASL-LHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDA 171 (212)
T ss_pred ccHHHHHHHHhCCCcEEEEEcccc-ccChhhcccccccccccccCCCCCccEEEEEEEeecC
Confidence 356899999999998888888631 11 002222211 1 11 235689999999994
No 31
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=78.40 E-value=2.1 Score=25.48 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHHHHHhccc
Q 022267 3 SSHLFLTTCLLILGVISSQTFA 24 (300)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~~~~~ 24 (300)
+..+||++++++++-.++-..+
T Consensus 15 ~~llflv~imliif~f~le~qd 36 (43)
T PF11395_consen 15 SFLLFLVIIMLIIFWFSLEIQD 36 (43)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 5678888888877766654433
No 32
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=71.90 E-value=4.1 Score=30.17 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=9.8
Q ss_pred CcchhHHHHHHHHHHHHHHHh
Q 022267 1 MASSHLFLTTCLLILGVISSQ 21 (300)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~ 21 (300)
|+|.. ||+|.|||.+.++++
T Consensus 1 MaSK~-~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKA-FLLLGLLLAALLLIS 20 (95)
T ss_pred CchhH-HHHHHHHHHHHHHHH
Confidence 67444 555554444444443
No 33
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.99 E-value=11 Score=31.30 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHcCCEEEEEEeccccccCCCCeEeccCCCCCCCcEEEEEEecCCC
Q 022267 237 SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSD 292 (300)
Q Consensus 237 ~~~~~ik~~l~~~GPV~v~i~~~~~f~~Y~~Giy~~~~~~~~~~Hav~iVGyg~~~ 292 (300)
.+..+||..|.+..||.+-... |-. ..-|+|+|.||+ +.
T Consensus 121 ksl~~ik~ql~kg~PV~iw~T~---~~~-------------~s~H~v~itgyD-k~ 159 (195)
T COG4990 121 KSLSDIKGQLLKGRPVVIWVTN---FHS-------------YSIHSVLITGYD-KY 159 (195)
T ss_pred CcHHHHHHHHhcCCcEEEEEec---ccc-------------cceeeeEeeccc-cc
Confidence 4678999999999999866544 321 136999999999 44
No 34
>PHA02909 hypothetical protein; Provisional
Probab=67.13 E-value=4.5 Score=26.53 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=16.2
Q ss_pred CcchhHHHHHHHHHHHHHHHh
Q 022267 1 MASSHLFLTTCLLILGVISSQ 21 (300)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~ 21 (300)
|.|++||.++.|.++..+..+
T Consensus 35 mvsfilfviiflsmftilacs 55 (72)
T PHA02909 35 MVSFILFVIIFLSMFTILACS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888887776654
No 35
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=64.05 E-value=14 Score=28.61 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=25.0
Q ss_pred HHHHHHHcCCEEEEEEeccccccCCCCeEeccCCCCCCCcEEEEEEec
Q 022267 242 IMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWG 289 (300)
Q Consensus 242 ik~~l~~~GPV~v~i~~~~~f~~Y~~Giy~~~~~~~~~~Hav~iVGyg 289 (300)
+++.+....||.+.++.. + .....+|.|+|+||+
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--~------------~~~~~gH~vVv~g~~ 103 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--V------------SITPSGHAMVVIGYD 103 (141)
T ss_pred HHHHHHCCCeEEEEEecC--c------------ccCCCCeEEEEEEEc
Confidence 778888888999988751 0 011258999999998
No 36
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=61.39 E-value=3.6 Score=20.43 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=7.3
Q ss_pred CcchhHHHHHHHHH
Q 022267 1 MASSHLFLTTCLLI 14 (300)
Q Consensus 1 ~~~~~~~l~~~~~~ 14 (300)
|+..++.|+.+|++
T Consensus 1 MMk~vIIlvvLLli 14 (19)
T PF13956_consen 1 MMKLVIILVVLLLI 14 (19)
T ss_pred CceehHHHHHHHhc
Confidence 55555555555444
No 37
>PLN03207 stomagen; Provisional
Probab=60.92 E-value=8.2 Score=28.48 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHhcccccchhhhccccccChHHHHHHHHc
Q 022267 5 HLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNE 48 (300)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~N~ 48 (300)
.|||+++.||+...+.|..+.......+.+..+-.++.++..|.
T Consensus 14 ~lffLl~~llla~~v~qgsr~~~~~~~~~~~s~~~q~~~~~l~g 57 (113)
T PLN03207 14 TLFFLLFFLLLGAYVIQGSRNQSILPYDQSISYPHQETVKLLNG 57 (113)
T ss_pred HHHHHHHHHHHHHHHHhccccccccCcccccccCchhccccccc
Confidence 46777777778888888887777666677766666666655554
No 38
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=49.17 E-value=12 Score=29.17 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 022267 6 LFLTTCLLILGVISS 20 (300)
Q Consensus 6 ~~l~~~~~~~~~~~~ 20 (300)
||+++|++||+++++
T Consensus 4 l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 4 LFAIIIVAILLFLFL 18 (130)
T ss_pred eHHHHHHHHHHHHHH
Confidence 444444444444433
No 39
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=47.27 E-value=13 Score=27.48 Aligned_cols=20 Identities=20% Similarity=-0.067 Sum_probs=12.5
Q ss_pred chhHHHHHHHHHHHHHHHhc
Q 022267 3 SSHLFLTTCLLILGVISSQT 22 (300)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~~~ 22 (300)
..+|.|+++++||+++-.++
T Consensus 6 ~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 34666776666666666654
No 40
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=37.69 E-value=40 Score=22.50 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHhcc
Q 022267 4 SHLFLTTCLLILGVISSQTF 23 (300)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~~ 23 (300)
+.||+|.+|++.++.+.|..
T Consensus 3 ~Kl~vialLC~aLva~vQ~A 22 (65)
T PF10731_consen 3 SKLIVIALLCVALVAIVQSA 22 (65)
T ss_pred chhhHHHHHHHHHHHHHhcC
Confidence 45777777777777777653
No 41
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=33.85 E-value=15 Score=26.44 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=12.9
Q ss_pred cchhHHHHHHHHHHHHHHHh
Q 022267 2 ASSHLFLTTCLLILGVISSQ 21 (300)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~ 21 (300)
|..++|.++++|+.+....+
T Consensus 41 c~~lVfVii~lFi~ll~~i~ 60 (84)
T PF06143_consen 41 CCFLVFVIIVLFILLLYNIN 60 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777776665554
No 42
>PF01754 zf-A20: A20-like zinc finger; InterPro: IPR002653 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in A20. A20 is an inhibitor of cell death that inhibits NF-kappaB activation via the tumour necrosis factor receptor associated factor pathway []. The zinc finger domains appear to mediate self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 2FIF_F 2FID_B 2C7N_C 2C7M_A 2L00_A 2KZY_A 2EQG_A 2EQE_A 3OJ3_J 3OJ4_C ....
Probab=31.11 E-value=27 Score=19.05 Aligned_cols=19 Identities=21% Similarity=0.641 Sum_probs=14.6
Q ss_pred CCCCCCCcccCCCCCccHH
Q 022267 109 PQCSTISRILDQGHCGSCW 127 (300)
Q Consensus 109 ~~~~~v~~v~dQg~CgsCw 127 (300)
++||+...+..++.|.-||
T Consensus 6 ~gCgf~Gs~~~~~~Cs~C~ 24 (25)
T PF01754_consen 6 NGCGFYGSPATNGLCSKCY 24 (25)
T ss_dssp TTSSSB-BGGGTTS-HHHH
T ss_pred CCCCCcccccccCcchhhc
Confidence 4788898999999998887
No 43
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=30.16 E-value=59 Score=21.34 Aligned_cols=17 Identities=12% Similarity=0.049 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 022267 4 SHLFLTTCLLILGVISS 20 (300)
Q Consensus 4 ~~~~l~~~~~~~~~~~~ 20 (300)
+.+||++++.+.+..+.
T Consensus 14 ~~~lLiliis~~f~lI~ 30 (61)
T PF06692_consen 14 SGPLLILIISFVFFLIT 30 (61)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 55666666555544443
No 44
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=30.16 E-value=31 Score=18.83 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=8.2
Q ss_pred cchhHHHHHHHHHH
Q 022267 2 ASSHLFLTTCLLIL 15 (300)
Q Consensus 2 ~~~~~~l~~~~~~~ 15 (300)
+..++|+.+.++++
T Consensus 7 mKkil~~l~a~~~L 20 (25)
T PF08139_consen 7 MKKILFPLLALFML 20 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666554
No 45
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=29.95 E-value=49 Score=27.61 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhhccccccChHHHHHHHHcC
Q 022267 6 LFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNEN 49 (300)
Q Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~N~~ 49 (300)
.+|++++|+++..... .-....+++.|.++..+ .++.-|+.
T Consensus 5 ai~l~iif~i~y~~I~--~dFde~~F~~rL~Vl~E-Ylkrtna~ 45 (183)
T PF08475_consen 5 AILLIIIFLIYYLIIY--NDFDENEFDNRLQVLTE-YLKRTNAD 45 (183)
T ss_pred HHHHHHHHHHHHHhhc--cccchHHHHHHHHHHHH-HHHhcCCC
Confidence 3344444444444432 23333556667776665 67777764
No 46
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=29.32 E-value=53 Score=23.02 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhcccccc
Q 022267 6 LFLTTCLLILGVISSQTFAEGV 27 (300)
Q Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~ 27 (300)
++|++|+|.+++.++|..+..+
T Consensus 38 l~L~LCiLvl~yai~~fkrkGt 59 (74)
T PF11857_consen 38 LVLLLCILVLIYAIFQFKRKGT 59 (74)
T ss_pred HHHHHHHHHHHHHhheeeecCC
Confidence 6788888888888888654433
No 47
>smart00259 ZnF_A20 A20-like zinc fingers. A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.
Probab=22.46 E-value=47 Score=18.25 Aligned_cols=19 Identities=26% Similarity=0.837 Sum_probs=16.0
Q ss_pred CCCCCCCcccCCCCCccHH
Q 022267 109 PQCSTISRILDQGHCGSCW 127 (300)
Q Consensus 109 ~~~~~v~~v~dQg~CgsCw 127 (300)
.+||+...+..|+.|.-||
T Consensus 7 ~~CgF~G~~~t~~~CskCy 25 (26)
T smart00259 7 PGCGFFGNPATEGLCSKCF 25 (26)
T ss_pred CCCCCcCChhhcccCHhhc
Confidence 3788888899999998886
No 48
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.39 E-value=90 Score=16.77 Aligned_cols=9 Identities=33% Similarity=0.449 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 022267 9 TTCLLILGV 17 (300)
Q Consensus 9 ~~~~~~~~~ 17 (300)
+++||+++.
T Consensus 9 ivVLFILLi 17 (24)
T PF09680_consen 9 IVVLFILLI 17 (24)
T ss_pred HHHHHHHHH
Confidence 344444443
No 49
>PF15284 PAGK: Phage-encoded virulence factor
Probab=21.76 E-value=85 Score=21.09 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 022267 6 LFLTTCLLILGVISSQTF 23 (300)
Q Consensus 6 ~~l~~~~~~~~~~~~~~~ 23 (300)
+||+++ |++.++.++++
T Consensus 7 ifL~l~-~~LsA~~FSas 23 (61)
T PF15284_consen 7 IFLALV-FILSAAGFSAS 23 (61)
T ss_pred HHHHHH-HHHHHhhhhHH
Confidence 444443 34444444333
No 50
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.69 E-value=1.1e+02 Score=21.50 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=12.9
Q ss_pred CcchhHHHHHHHHHHHHHHH
Q 022267 1 MASSHLFLTTCLLILGVISS 20 (300)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~ 20 (300)
|.+..++..+++|+++.+..
T Consensus 1 m~~~fl~~PliiF~ifVaPi 20 (75)
T PRK09458 1 MSALFLAIPLTIFVLFVAPI 20 (75)
T ss_pred CcchHHHHhHHHHHHHHHHH
Confidence 45556666767777666655
Done!