BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022268
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H07|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
pdb|2H07|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
Length = 326
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 13/188 (6%)
Query: 85 MKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLA 144
M + +F L++++A + +EL + +KF + + I +RG+ V +
Sbjct: 1 MPNIKIFSGSSHQDLSQKIADRL-GLELGKVVTKKFSNQETCVEI--GESVRGEDVYIVQ 57
Query: 145 SFSSP--GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILS 202
S + E L +I A S T V+P FP +D+ D + A A++++
Sbjct: 58 SGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYAR----QDKKDKSRAPISAKLVA 113
Query: 203 NIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQ-LPDSDNISIAFP 261
N+ S G ++T D+HA Q + +F + + A P +L +++ + + N +I P
Sbjct: 114 NM-LSVAGADHIITMDLHAAQIQGFFDIPVDNLY--AEPAVLKWIRENISEWRNCTIVSP 170
Query: 262 DDGAWKRF 269
D G KR
Sbjct: 171 DAGGAKRV 178
>pdb|2H06|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2H06|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2HCR|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|2HCR|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|3EFH|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3EFH|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3S5J|B Chain B, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
pdb|3S5J|A Chain A, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
Length = 326
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 13/188 (6%)
Query: 85 MKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLA 144
M + +F L++++A + +EL + +KF + + I +RG+ V +
Sbjct: 1 MPNIKIFSGSSHQDLSQKIADRL-GLELGKVVTKKFSNQETCVEI--GESVRGEDVYIVQ 57
Query: 145 SFSSP--GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILS 202
S + E L +I A S T V+P FP +D+ D + A A++++
Sbjct: 58 SGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYAR----QDKKDKSRAPISAKLVA 113
Query: 203 NIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQ-LPDSDNISIAFP 261
N+ S G ++T D+HA Q + +F + + A P +L +++ + + N +I P
Sbjct: 114 NM-LSVAGADHIITMDLHASQIQGFFDIPVDNLY--AEPAVLKWIRENISEWRNCTIVSP 170
Query: 262 DDGAWKRF 269
D G KR
Sbjct: 171 DAGGAKRV 178
>pdb|2H08|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
pdb|2H08|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
Length = 326
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 19/191 (9%)
Query: 85 MKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLA 144
M + +F L++++A + +EL + +KF + + I +RG+ V +
Sbjct: 1 MPNIKIFSGSSHQDLSQKIADRL-GLELGKVVTKKFSNQETCVEI--GESVRGEDVYIVQ 57
Query: 145 SFSSP--GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILS 202
S + E L +I A S T V+P FP +D+ D + A A++++
Sbjct: 58 SGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYAR----QDKKDKSRAPISAKLVA 113
Query: 203 NIPTSRGGPTSLVTFDIHALQERFYFG---DTILPCFESAIPLLLNRLQQ-LPDSDNISI 258
N+ S G ++T D+HA Q + +F D ++ A P +L +++ + + N +I
Sbjct: 114 NM-LSVAGADHIITMDLHASQIQGFFDIPVDNLM-----AEPAVLKWIRENISEWRNCTI 167
Query: 259 AFPDDGAWKRF 269
PD G KR
Sbjct: 168 VSPDAGGAKRV 178
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 135 IRGQHVAFLASFSSP--GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVA 192
+RG+ V + + S I E L ++YA S V+P+FP +M G +
Sbjct: 77 VRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIV 136
Query: 193 TAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFE-SAIPLLLNRLQ-QL 250
+ LA ++ + G T L+T D+H + + +F +P A P LL +Q ++
Sbjct: 137 SKL-LASMM-----CKAGLTHLITMDLHQKEIQGFFN---IPVDNLRASPFLLQYIQEEI 187
Query: 251 PDSDNISIAFPDDGAWKRFHKQLQHFPMVLRM 282
PD N I + KR Q F LR+
Sbjct: 188 PDYRNAVIVAKSPASAKR----AQSFAERLRL 215
>pdb|2C4K|A Chain A, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|B Chain B, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|C Chain C, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|D Chain D, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|E Chain E, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|F Chain F, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
Length = 370
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 28/215 (13%)
Query: 99 LAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASF--SSPGKIFEQL 156
LA+R+ + A +S+ +++ +G + I + +RGQ + + + + E L
Sbjct: 41 LAKRITERLGAELGKSVVYQE-TNGETRVEIKES--VRGQDIFIIQTIPRDVNTAVMELL 97
Query: 157 SVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVT 216
+ YAL + V+P+FP +M G + LA +L ++ G T ++T
Sbjct: 98 IMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKL-LASML-----AKAGLTHIIT 151
Query: 217 FDIHALQERFYFG---DTILPCFESAIPLLLNRLQ-QLPDSDNISIAFPDDGAWKRFHKQ 272
D+H + + +F D + A P LL +Q ++P+ N I A KR
Sbjct: 152 MDLHQKEIQGFFSFPVDNL-----RASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSY 206
Query: 273 LQHFPMVLRMPYVDLYCV--------HHAPAYKNS 299
+ + L + + + C H P KN+
Sbjct: 207 AERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNA 241
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
Query: 119 KFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVIYALPKLFVSSFTLVLPF 176
+F DG + I +RG+ V L S +P + E + ++ AL + T +P+
Sbjct: 38 RFSDGEIQVEIQ--ENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASAGRITAAIPY 95
Query: 177 FPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCF 236
F +R VA + A++++N+ G ++T D+HA Q + +F + +
Sbjct: 96 FGYARQDRRPRSARVAIS---AKVVANM-LEIAGVERIITMDLHADQIQGFFDIPVDNIY 151
Query: 237 ESAIPLLLN--RLQQLPDSDNISIAFPDDGAWKR---FHKQL 273
A P+LL R Q PD + + PD G R KQL
Sbjct: 152 --ATPILLGDLRKQNYPD---LLVVSPDVGGVVRARALAKQL 188
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 95 ETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGK-IF 153
++ +LA +VA + +L + +++F D +++ I + + + I
Sbjct: 8 QSQNLAFKVAKLLNT-KLTRVEYKRFPDN--EIYVRIVDEINDDEAVIINTQKNQNDAIV 64
Query: 154 EQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTS 213
E + + AL V TLV P+ ++ + G+ + LA+I SNI
Sbjct: 65 ETILLCDALRDEGVKKITLVAPYLAYARQDKKFNPGEAISIRALAKIYSNI------VDK 118
Query: 214 LVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWK 267
L+T + H + +F TI + A+P L ++ +D I +A PD GA +
Sbjct: 119 LITINPHETHIKDFF--TIPFIYGDAVPKLAEYVKD-KLNDPIVLA-PDKGALE 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,592,566
Number of Sequences: 62578
Number of extensions: 319092
Number of successful extensions: 823
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 7
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)