Query 022268
Match_columns 300
No_of_seqs 151 out of 1270
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 09:19:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0462 PrsA Phosphoribosylpyr 100.0 1.1E-59 2.4E-64 445.5 20.8 193 85-299 2-196 (314)
2 PLN02297 ribose-phosphate pyro 100.0 1.7E-55 3.6E-60 420.9 22.7 193 81-273 10-202 (326)
3 PRK00553 ribose-phosphate pyro 100.0 1.8E-53 4E-58 407.9 21.7 195 82-298 4-200 (332)
4 PRK04923 ribose-phosphate pyro 100.0 1.3E-52 2.7E-57 400.2 21.4 184 84-277 3-189 (319)
5 PRK02812 ribose-phosphate pyro 100.0 1.5E-52 3.4E-57 401.3 21.6 185 81-276 15-201 (330)
6 PRK02269 ribose-phosphate pyro 100.0 2E-52 4.4E-57 398.8 20.7 190 86-297 4-196 (320)
7 PTZ00145 phosphoribosylpyropho 100.0 2.6E-52 5.6E-57 411.0 20.7 203 79-298 111-317 (439)
8 PRK02458 ribose-phosphate pyro 100.0 5.6E-52 1.2E-56 396.3 21.2 185 83-277 5-192 (323)
9 KOG1448 Ribose-phosphate pyrop 100.0 3.7E-52 8.1E-57 389.4 16.5 189 85-283 1-192 (316)
10 PRK07199 phosphoribosylpyropho 100.0 2.8E-51 6.1E-56 388.0 20.7 187 87-298 2-192 (301)
11 PRK01259 ribose-phosphate pyro 100.0 2.4E-50 5.1E-55 382.8 20.2 178 88-276 1-180 (309)
12 PRK03092 ribose-phosphate pyro 100.0 3.2E-50 6.9E-55 381.3 18.7 169 99-277 1-171 (304)
13 PRK00934 ribose-phosphate pyro 100.0 1.1E-49 2.4E-54 374.1 20.2 176 89-277 1-177 (285)
14 PRK06827 phosphoribosylpyropho 100.0 1.9E-49 4.2E-54 386.1 22.0 191 85-298 6-239 (382)
15 TIGR01251 ribP_PPkin ribose-ph 100.0 2.7E-49 5.9E-54 374.8 20.9 179 88-277 1-182 (308)
16 PLN02369 ribose-phosphate pyro 100.0 3.3E-48 7.1E-53 367.3 19.5 170 97-276 1-173 (302)
17 KOG1503 Phosphoribosylpyrophos 100.0 5.1E-41 1.1E-45 308.2 16.7 183 85-278 6-191 (354)
18 PF13793 Pribosyltran_N: N-ter 100.0 7.8E-39 1.7E-43 265.6 13.0 112 88-203 1-114 (116)
19 TIGR01251 ribP_PPkin ribose-ph 98.6 1.8E-06 3.9E-11 82.5 15.3 136 87-250 160-297 (308)
20 PRK13811 orotate phosphoribosy 97.7 7E-05 1.5E-09 65.9 5.9 84 195-298 3-88 (170)
21 PRK07199 phosphoribosylpyropho 97.1 0.027 6E-07 54.0 15.8 131 87-250 162-293 (301)
22 PRK04923 ribose-phosphate pyro 96.9 0.033 7.1E-07 54.0 15.1 139 86-250 167-307 (319)
23 PRK00934 ribose-phosphate pyro 96.7 0.062 1.3E-06 51.0 15.1 125 87-248 156-284 (285)
24 PRK03092 ribose-phosphate pyro 96.7 0.069 1.5E-06 51.3 15.5 138 86-250 149-290 (304)
25 PLN02369 ribose-phosphate pyro 96.6 0.098 2.1E-06 50.3 15.3 137 86-250 151-291 (302)
26 PRK02458 ribose-phosphate pyro 96.5 0.089 1.9E-06 51.1 14.4 136 86-250 169-306 (323)
27 PRK02269 ribose-phosphate pyro 96.3 0.17 3.7E-06 49.0 15.2 138 86-250 165-306 (320)
28 PRK02812 ribose-phosphate pyro 96.3 0.18 3.8E-06 49.2 15.3 137 86-250 179-319 (330)
29 PRK01259 ribose-phosphate pyro 96.2 0.21 4.6E-06 48.1 15.4 139 86-250 158-298 (309)
30 PTZ00145 phosphoribosylpyropho 96.2 0.13 2.9E-06 52.0 14.5 140 86-250 279-425 (439)
31 PRK00553 ribose-phosphate pyro 95.8 0.3 6.6E-06 47.6 14.3 142 86-250 168-311 (332)
32 PRK06827 phosphoribosylpyropho 95.0 0.9 1.9E-05 45.3 15.1 140 87-250 208-357 (382)
33 COG0462 PrsA Phosphoribosylpyr 93.3 0.67 1.5E-05 45.2 9.9 136 87-250 164-303 (314)
34 PRK15423 hypoxanthine phosphor 92.8 2.2 4.8E-05 38.0 11.8 85 86-174 35-128 (178)
35 PRK09162 hypoxanthine-guanine 92.0 2.4 5.1E-05 37.6 11.0 84 87-174 42-132 (181)
36 PLN02297 ribose-phosphate pyro 90.1 7.7 0.00017 38.0 13.3 138 86-248 183-325 (326)
37 PRK00129 upp uracil phosphorib 89.5 4.9 0.00011 36.3 10.8 87 86-175 70-160 (209)
38 TIGR01203 HGPRTase hypoxanthin 88.2 9.3 0.0002 33.4 11.4 84 87-174 27-119 (166)
39 PF14572 Pribosyl_synth: Phosp 88.2 1.3 2.8E-05 40.1 6.0 97 129-249 75-172 (184)
40 PLN02501 digalactosyldiacylgly 87.9 6.6 0.00014 42.6 12.0 172 87-281 278-464 (794)
41 PTZ00271 hypoxanthine-guanine 86.8 9.4 0.0002 35.1 11.0 86 86-174 57-154 (211)
42 TIGR01091 upp uracil phosphori 86.2 9.8 0.00021 34.4 10.6 87 86-175 68-158 (207)
43 PLN02238 hypoxanthine phosphor 85.8 15 0.00031 33.0 11.5 84 87-174 37-132 (189)
44 PRK13812 orotate phosphoribosy 85.1 0.92 2E-05 40.2 3.4 46 240-298 45-90 (176)
45 PLN02440 amidophosphoribosyltr 82.1 14 0.0003 37.9 10.8 121 86-220 276-421 (479)
46 PRK07272 amidophosphoribosyltr 81.6 6.3 0.00014 40.6 8.2 122 87-220 287-431 (484)
47 PRK02304 adenine phosphoribosy 78.7 21 0.00045 31.1 9.5 80 87-170 53-145 (175)
48 PLN02293 adenine phosphoribosy 78.6 3.7 7.9E-05 36.9 4.8 35 240-277 51-85 (187)
49 PRK08525 amidophosphoribosyltr 78.4 12 0.00027 37.9 9.0 121 86-229 276-411 (445)
50 TIGR01203 HGPRTase hypoxanthin 78.4 3.7 8.1E-05 35.9 4.7 39 240-278 12-50 (166)
51 TIGR01090 apt adenine phosphor 77.9 24 0.00052 30.6 9.7 75 93-171 54-141 (169)
52 PRK05793 amidophosphoribosyltr 76.5 18 0.00039 37.0 9.6 118 54-176 253-390 (469)
53 PRK02277 orotate phosphoribosy 75.9 22 0.00048 32.0 9.1 84 87-174 87-175 (200)
54 PRK08341 amidophosphoribosyltr 74.7 19 0.00042 36.6 9.2 86 86-175 272-370 (442)
55 PTZ00149 hypoxanthine phosphor 73.7 41 0.00089 31.6 10.5 86 86-174 81-185 (241)
56 PRK07322 adenine phosphoribosy 73.6 3.7 8.1E-05 36.2 3.4 57 221-279 17-77 (178)
57 PRK00455 pyrE orotate phosphor 73.6 30 0.00066 30.9 9.4 78 87-170 66-144 (202)
58 PRK09123 amidophosphoribosyltr 71.8 35 0.00075 35.1 10.4 85 86-174 296-395 (479)
59 PRK12560 adenine phosphoribosy 71.2 4.2 9.1E-05 36.3 3.2 62 213-277 11-74 (187)
60 PRK05205 bifunctional pyrimidi 70.3 47 0.001 29.0 9.6 83 87-172 32-129 (176)
61 TIGR01367 pyrE_Therm orotate p 70.0 70 0.0015 28.5 10.8 75 87-170 60-136 (187)
62 PRK09162 hypoxanthine-guanine 69.9 7.6 0.00016 34.4 4.5 40 239-278 25-64 (181)
63 TIGR01134 purF amidophosphorib 68.7 49 0.0011 33.6 10.5 129 52-185 236-395 (442)
64 COG0634 Hpt Hypoxanthine-guani 67.9 64 0.0014 29.2 9.9 85 86-173 35-127 (178)
65 PF01380 SIS: SIS domain SIS d 67.7 6.2 0.00013 31.5 3.3 82 84-172 4-86 (131)
66 PLN02293 adenine phosphoribosy 66.7 84 0.0018 28.1 10.6 79 87-170 64-156 (187)
67 PRK13811 orotate phosphoribosy 65.9 55 0.0012 28.7 9.1 78 93-178 64-142 (170)
68 PRK00455 pyrE orotate phosphor 65.1 13 0.00029 33.2 5.2 24 254-277 64-87 (202)
69 cd05014 SIS_Kpsf KpsF-like pro 65.0 34 0.00074 27.4 7.2 78 87-172 2-80 (128)
70 PRK02304 adenine phosphoribosy 65.0 10 0.00023 33.0 4.4 24 254-277 51-74 (175)
71 TIGR00336 pyrE orotate phospho 64.7 12 0.00025 32.9 4.6 26 253-278 53-78 (173)
72 TIGR01367 pyrE_Therm orotate p 64.4 13 0.00027 33.3 4.9 37 240-277 45-81 (187)
73 PRK03803 murD UDP-N-acetylmura 61.4 31 0.00067 34.2 7.5 152 98-274 279-434 (448)
74 TIGR00336 pyrE orotate phospho 59.8 62 0.0013 28.2 8.3 82 89-177 57-145 (173)
75 PRK09246 amidophosphoribosyltr 59.2 53 0.0011 33.9 8.9 85 87-175 295-394 (501)
76 TIGR01090 apt adenine phosphor 57.7 18 0.00038 31.5 4.5 36 240-278 35-70 (169)
77 cd05008 SIS_GlmS_GlmD_1 SIS (S 57.3 40 0.00086 26.9 6.2 78 88-172 2-79 (126)
78 PF00156 Pribosyltran: Phospho 57.2 95 0.0021 24.5 10.7 79 93-175 35-124 (125)
79 PRK14093 UDP-N-acetylmuramoyla 54.9 84 0.0018 31.8 9.4 144 99-259 298-449 (479)
80 PRK13809 orotate phosphoribosy 54.7 21 0.00045 32.6 4.6 33 253-297 66-98 (206)
81 PRK15482 transcriptional regul 52.7 27 0.00058 32.6 5.1 82 84-172 134-215 (285)
82 PRK13812 orotate phosphoribosy 52.2 1.1E+02 0.0024 27.0 8.7 76 87-169 60-137 (176)
83 cd04724 Tryptophan_synthase_al 52.1 57 0.0012 30.1 7.2 105 153-290 62-167 (242)
84 COG2236 Predicted phosphoribos 52.0 97 0.0021 28.2 8.4 77 83-160 27-111 (192)
85 PRK07349 amidophosphoribosyltr 51.3 80 0.0017 32.8 8.7 116 54-174 277-412 (500)
86 PF01012 ETF: Electron transfe 49.3 1.2E+02 0.0026 25.7 8.2 100 150-278 15-115 (164)
87 PRK12560 adenine phosphoribosy 48.4 2E+02 0.0043 25.6 9.9 74 93-170 59-145 (187)
88 PRK02006 murD UDP-N-acetylmura 47.7 77 0.0017 32.0 7.9 148 98-274 326-478 (498)
89 PRK15423 hypoxanthine phosphor 47.4 28 0.00061 30.9 4.2 39 240-278 18-58 (178)
90 PRK02277 orotate phosphoribosy 45.7 37 0.00081 30.5 4.8 25 254-278 85-109 (200)
91 PRK13809 orotate phosphoribosy 45.0 1.2E+02 0.0026 27.6 8.0 70 94-168 76-147 (206)
92 PRK06781 amidophosphoribosyltr 44.5 95 0.0021 31.9 7.9 118 53-175 247-384 (471)
93 PRK07631 amidophosphoribosyltr 44.4 1.1E+02 0.0023 31.6 8.4 117 54-175 248-384 (475)
94 cd05013 SIS_RpiR RpiR-like pro 44.2 59 0.0013 25.7 5.3 77 86-169 14-90 (139)
95 cd05710 SIS_1 A subgroup of th 44.1 49 0.0011 26.9 4.8 78 88-171 2-79 (120)
96 PRK09219 xanthine phosphoribos 43.7 38 0.00083 30.4 4.5 32 254-285 50-83 (189)
97 TIGR01744 XPRTase xanthine pho 43.6 37 0.00081 30.5 4.4 37 240-276 35-72 (191)
98 PRK08659 2-oxoglutarate ferred 43.1 1E+02 0.0022 30.5 7.8 66 137-224 273-338 (376)
99 PRK11070 ssDNA exonuclease Rec 43.0 1.3E+02 0.0027 31.9 8.7 73 137-224 69-141 (575)
100 cd05009 SIS_GlmS_GlmD_2 SIS (S 42.9 69 0.0015 26.1 5.6 81 85-170 13-93 (153)
101 TIGR00393 kpsF KpsF/GutQ famil 42.5 72 0.0016 29.0 6.2 78 87-171 2-79 (268)
102 PRK08105 flavodoxin; Provision 42.2 1.7E+02 0.0037 24.9 8.1 112 85-215 1-120 (149)
103 PRK11557 putative DNA-binding 41.1 47 0.001 30.6 4.8 82 83-172 126-208 (278)
104 PRK08525 amidophosphoribosyltr 40.7 35 0.00077 34.6 4.2 25 253-278 275-299 (445)
105 PF00156 Pribosyltran: Phospho 40.6 39 0.00084 26.8 3.7 38 240-278 14-51 (125)
106 PRK11337 DNA-binding transcrip 39.3 58 0.0013 30.3 5.2 82 84-172 139-220 (292)
107 PRK07847 amidophosphoribosyltr 39.0 1.5E+02 0.0032 31.0 8.4 117 54-175 267-403 (510)
108 COG0856 Orotate phosphoribosyl 38.4 1.3E+02 0.0029 27.5 7.0 71 94-169 95-171 (203)
109 COG2185 Sbm Methylmalonyl-CoA 37.7 98 0.0021 27.1 5.9 60 138-218 64-123 (143)
110 COG0034 PurF Glutamine phospho 37.2 1.3E+02 0.0029 31.1 7.5 157 52-221 246-430 (470)
111 PRK06388 amidophosphoribosyltr 36.2 2E+02 0.0043 29.7 8.8 77 96-175 302-392 (474)
112 smart00166 UBX Domain present 36.1 1.1E+02 0.0023 23.2 5.3 35 142-176 17-51 (80)
113 PF06574 FAD_syn: FAD syntheta 34.8 85 0.0018 27.2 5.1 72 189-277 59-137 (157)
114 PRK07322 adenine phosphoribosy 33.1 3.3E+02 0.0073 23.8 10.6 93 87-184 54-164 (178)
115 COG0716 FldA Flavodoxins [Ener 33.1 2.9E+02 0.0064 23.2 8.3 35 86-121 2-39 (151)
116 PRK11595 DNA utilization prote 33.1 1.9E+02 0.0041 26.3 7.4 72 98-173 136-221 (227)
117 PRK09004 FMN-binding protein M 30.8 2.3E+02 0.0051 24.0 7.1 111 85-217 1-120 (146)
118 TIGR02990 ectoine_eutA ectoine 30.7 29 0.00064 32.3 1.7 23 157-179 110-132 (239)
119 PF08410 DUF1737: Domain of un 30.7 1.5E+02 0.0033 21.8 5.0 38 86-123 4-42 (54)
120 COG1737 RpiR Transcriptional r 30.4 75 0.0016 29.9 4.4 81 85-172 130-210 (281)
121 PF05124 S_layer_C: S-layer li 30.2 1.4E+02 0.0031 27.8 6.0 55 84-148 153-208 (222)
122 KOG1448 Ribose-phosphate pyrop 30.0 1.5E+02 0.0033 29.1 6.4 95 81-180 158-255 (316)
123 PRK09271 flavodoxin; Provision 30.0 3.5E+02 0.0075 23.0 8.8 68 88-159 3-78 (160)
124 cd05005 SIS_PHI Hexulose-6-pho 28.3 3.6E+02 0.0077 23.1 8.0 74 86-172 34-108 (179)
125 cd03522 MoeA_like MoeA_like. T 28.1 78 0.0017 30.8 4.1 44 168-220 6-49 (312)
126 TIGR03127 RuMP_HxlB 6-phospho 27.6 3.5E+02 0.0076 23.1 7.8 75 85-172 30-105 (179)
127 cd01831 Endoglucanase_E_like E 27.5 2.6E+02 0.0057 23.4 6.9 85 153-249 81-166 (169)
128 PRK05205 bifunctional pyrimidi 26.8 79 0.0017 27.6 3.6 38 240-277 16-54 (176)
129 TIGR00262 trpA tryptophan synt 26.7 5.3E+02 0.011 24.1 10.3 64 209-290 114-178 (256)
130 PLN02238 hypoxanthine phosphor 26.7 74 0.0016 28.4 3.4 39 240-278 21-59 (189)
131 TIGR00644 recJ single-stranded 26.7 1.6E+02 0.0035 30.5 6.4 71 138-224 55-125 (539)
132 PRK05568 flavodoxin; Provision 26.7 3.5E+02 0.0076 22.0 8.1 51 87-145 3-56 (142)
133 PRK03815 murD UDP-N-acetylmura 26.5 4.1E+02 0.0088 26.4 9.0 148 99-274 239-389 (401)
134 cd04795 SIS SIS domain. SIS (S 26.2 1.9E+02 0.0041 21.1 5.1 79 89-173 2-81 (87)
135 PRK13810 orotate phosphoribosy 26.1 2.3E+02 0.0051 25.3 6.6 67 99-174 87-157 (187)
136 PRK09213 pur operon repressor; 26.0 1.1E+02 0.0023 29.4 4.5 23 254-276 130-152 (271)
137 PRK04308 murD UDP-N-acetylmura 25.8 85 0.0019 31.1 4.1 64 210-275 368-434 (445)
138 PRK11543 gutQ D-arabinose 5-ph 25.5 2E+02 0.0043 27.0 6.3 78 86-170 43-120 (321)
139 TIGR01564 S_layer_MJ S-layer p 24.8 1.4E+02 0.0031 31.7 5.5 57 84-149 502-558 (571)
140 TIGR01743 purR_Bsub pur operon 24.7 1.1E+02 0.0025 29.1 4.5 23 254-276 128-150 (268)
141 cd05017 SIS_PGI_PMI_1 The memb 24.2 3.7E+02 0.0081 21.4 7.0 74 88-172 2-76 (119)
142 PRK08558 adenine phosphoribosy 24.0 1.1E+02 0.0024 28.4 4.2 30 254-283 111-142 (238)
143 cd01773 Faf1_like1_UBX Faf1 ik 23.5 2E+02 0.0044 22.7 5.0 34 142-176 18-51 (82)
144 PRK00683 murD UDP-N-acetylmura 23.2 2.7E+02 0.006 27.4 7.1 63 210-274 338-402 (418)
145 PRK02472 murD UDP-N-acetylmura 23.2 4.1E+02 0.0089 26.1 8.2 62 211-274 368-432 (447)
146 cd01985 ETF The electron trans 22.9 2.1E+02 0.0045 24.6 5.5 67 209-286 58-124 (181)
147 PF02633 Creatininase: Creatin 22.9 1.4E+02 0.0031 27.1 4.7 68 150-222 38-111 (237)
148 COG2065 PyrR Pyrimidine operon 22.4 2.2E+02 0.0047 25.9 5.5 61 84-146 29-105 (179)
149 PRK09219 xanthine phosphoribos 22.0 5.1E+02 0.011 23.2 7.9 71 94-168 59-146 (189)
150 PRK08558 adenine phosphoribosy 21.4 6.6E+02 0.014 23.3 9.9 78 87-169 113-206 (238)
151 PRK12359 flavodoxin FldB; Prov 21.2 1.8E+02 0.004 25.7 4.9 107 89-218 4-120 (172)
152 PF13399 LytR_C: LytR cell env 20.7 2.7E+02 0.0057 21.2 5.1 23 86-108 43-65 (90)
153 TIGR03470 HpnH hopanoid biosyn 20.6 1.8E+02 0.0038 28.0 4.9 45 137-182 162-206 (318)
154 cd06253 M14_ASTE_ASPA_like_3 A 20.5 5.3E+02 0.012 24.6 8.2 41 137-177 19-67 (298)
155 COG0503 Apt Adenine/guanine ph 20.3 1.2E+02 0.0027 26.8 3.6 41 242-297 44-84 (179)
No 1
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-59 Score=445.50 Aligned_cols=193 Identities=26% Similarity=0.376 Sum_probs=183.9
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHHHHHHhc
Q 022268 85 MKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVIYAL 162 (300)
Q Consensus 85 ~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELLllidAl 162 (300)
+++|+||+|+++++||++||+.| |+++++++.++|||| |++|++.|+|||+||||+|++++| |+|||||+|+|||
T Consensus 2 ~~~~~if~g~s~~~La~~ia~~l-~~~l~~~~~~rF~DG--E~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~ 78 (314)
T COG0462 2 MNNMKIFSGSSNPELAEKIAKRL-GIPLGKVEVKRFPDG--EIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDAL 78 (314)
T ss_pred CCceEEEECCCCHHHHHHHHHHh-CCCcccceeEEcCCC--cEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 57899999999999999999999 799999999999999 699999999999999999999986 7899999999999
Q ss_pred ccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHH
Q 022268 163 PKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPL 242 (300)
Q Consensus 163 rragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~l 242 (300)
|++||++||+||||||||||||++++|||||+|++|+||+ ++|+|||+|||||++|+||||++|+++ |++.|.
T Consensus 79 k~asA~~It~ViPY~gYARQDk~~~~repIsaklvA~lL~-----~aG~drv~TvDlH~~qiqgfFdipvdn--l~a~p~ 151 (314)
T COG0462 79 KRASAKRITAVIPYFGYARQDKAFKPREPISAKLVANLLE-----TAGADRVLTVDLHAPQIQGFFDIPVDN--LYAAPL 151 (314)
T ss_pred HhcCCceEEEEeecchhhccCcccCCCCCEeHHHHHHHHH-----HcCCCeEEEEcCCchhhcccCCCcccc--ccchHH
Confidence 9999999999999999999999999999999999999999 569999999999999999999999995 699999
Q ss_pred HHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCCccccccccccCCceeeeeecC
Q 022268 243 LLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMVLRMPYVDLYCVHHAPAYKNS 299 (300)
Q Consensus 243 L~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~vv~~~~~~~lg~~~a~~~k~~ 299 (300)
+++|+++..+.+|+||||||.||++||+.+| +.||+++++++|+.
T Consensus 152 l~~~~~~~~~~~d~vVVSPD~Ggv~RAr~~A------------~~L~~~~a~i~K~R 196 (314)
T COG0462 152 LAEYIREKYDLDDPVVVSPDKGGVKRARALA------------DRLGAPLAIIDKRR 196 (314)
T ss_pred HHHHHHHhcCCCCcEEECCCccHHHHHHHHH------------HHhCCCEEEEEEee
Confidence 9999988545567999999999999999999 99999999999973
No 2
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=1.7e-55 Score=420.94 Aligned_cols=193 Identities=84% Similarity=1.324 Sum_probs=178.6
Q ss_pred ccCCCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHH
Q 022268 81 ASRTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIY 160 (300)
Q Consensus 81 ~~~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllid 160 (300)
..++.++|+||+|+++++||++||+.|+|++++++++++|||||.|++|+++++|||+|||||||+++||++||||++++
T Consensus 10 ~~~~~~~~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~pd~lmELLl~~d 89 (326)
T PLN02297 10 SKKNKKQVHLFYCEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSPAVIFEQLSVIY 89 (326)
T ss_pred ccccCCCeEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCChHHHHHHHHHH
Confidence 45677899999999999999999998536999999999999998888998899999999999999998899999999999
Q ss_pred hcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccH
Q 022268 161 ALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAI 240 (300)
Q Consensus 161 AlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~ 240 (300)
|||++||++||+|+||||||||||++++|||+|+|++|+||++++.+.+|+|+|+|||+|++|+++||++|++++++++.
T Consensus 90 Alr~~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~fF~~~~~~l~l~a~ 169 (326)
T PLN02297 90 ALPKLFVASFTLVLPFFPTGTSERVEREGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFGDNVLPCFESGI 169 (326)
T ss_pred HHHHcCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHCCccCCcccchhhccH
Confidence 99999999999999999999999999999999999999999976544479999999999999999999999987677999
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHH
Q 022268 241 PLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQL 273 (300)
Q Consensus 241 ~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A 273 (300)
++|++|+++..+.++++|||||.|+++||+.++
T Consensus 170 ~~l~~~i~~~~~~~~~vvVsPD~Ga~~ra~~~a 202 (326)
T PLN02297 170 PLLKKRLQQLPDSDNIVIAFPDDGAWKRFHKQF 202 (326)
T ss_pred HHHHHHHHhccccCCcEEEecCccHHHHHHHHc
Confidence 999999976423578999999999999998877
No 3
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.8e-53 Score=407.92 Aligned_cols=195 Identities=23% Similarity=0.302 Sum_probs=179.3
Q ss_pred cCCCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHHHHH
Q 022268 82 SRTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVI 159 (300)
Q Consensus 82 ~~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELLlli 159 (300)
+...++++||+|+++++||++||+.| |++++++++++|||| |+++++.++|||+|||||||+++| |++||||+++
T Consensus 4 ~~~~~~~~i~~~~~~~~La~~ia~~l-g~~l~~~~~~~FpdG--E~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~ 80 (332)
T PRK00553 4 SIDKSNHVIFSLSKAKKLVDSICRKL-SMKPGEIVIQKFADG--ETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAI 80 (332)
T ss_pred ccCCCCeEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC--CEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHH
Confidence 45678999999999999999999999 799999999999999 699999999999999999999875 7899999999
Q ss_pred HhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCccc
Q 022268 160 YALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESA 239 (300)
Q Consensus 160 dAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a 239 (300)
+|||++||++||+||||||||||||++.+|||+|+|++|+||+. +|+|+|||+|+|++|+++||++|+++ |++
T Consensus 81 ~alr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~-----~g~d~vit~DlH~~~i~~~F~ipv~~--l~a 153 (332)
T PRK00553 81 DALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTK-----AGVTRVTLTDIHSDQTQGFFDIPVDI--LRT 153 (332)
T ss_pred HHHHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHh-----cCCCEEEEEeCChHHHHhhcCCCcce--eec
Confidence 99999999999999999999999999999999999999999995 59999999999999999999999995 699
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCCccccccccccCCceeeeeec
Q 022268 240 IPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMVLRMPYVDLYCVHHAPAYKN 298 (300)
Q Consensus 240 ~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~vv~~~~~~~lg~~~a~~~k~ 298 (300)
.++|++|+++..+.++++||+||.|+++||+.+| ..||+++++++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~vvVsPD~gg~~rA~~lA------------~~lg~~~~vi~K~ 200 (332)
T PRK00553 154 YHVFLSRVLELLGKKDLVVVSPDYGGVKRARLIA------------ESLELPLAIIDKR 200 (332)
T ss_pred hHHHHHHHHHhcCCCCeEEEEECCCcHHHHHHHH------------HHhCCCEEEEEEe
Confidence 9999999976334588999999999999999999 4455566666554
No 4
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.3e-52 Score=400.23 Aligned_cols=184 Identities=23% Similarity=0.328 Sum_probs=170.7
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHHHHHHh
Q 022268 84 TMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVIYA 161 (300)
Q Consensus 84 ~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELLllidA 161 (300)
..++|+||+|+++++||++||+.| |++++++++++|||| |++|+++++|||+|||||||++.| |++||||++++|
T Consensus 3 ~~~~~~i~~g~~~~~La~~ia~~l-g~~l~~~~~~~FpdG--E~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~a 79 (319)
T PRK04923 3 DQRNLLVFSGNANKPLAQSICKEL-GVRMGKALVTRFSDG--EVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDA 79 (319)
T ss_pred CCCceEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC--CEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHH
Confidence 457899999999999999999999 799999999999999 699999999999999999999765 789999999999
Q ss_pred cccCCCceEEEEeccCCCccccccCCC-CCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccH
Q 022268 162 LPKLFVSSFTLVLPFFPTGTSERMEDE-GDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAI 240 (300)
Q Consensus 162 lrragAk~ItlVIPYf~YARQDR~~~~-Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~ 240 (300)
+|++||++||+|+||||||||||++.+ |||+|+|++|+||+. +|+|+|||||+|++++++||++|+++ |++.
T Consensus 80 lr~~~a~~i~~ViPYl~YaRQDr~~~~~~~~isak~va~ll~~-----~g~d~vitvD~H~~~~~~~f~~p~~~--l~~~ 152 (319)
T PRK04923 80 LKRASAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISA-----MGADRVLTVDLHADQIQGFFDVPVDN--VYAS 152 (319)
T ss_pred HHHcCCcEEEEEeeccccccccccccCCCCCccHHHHHHHHHh-----cCCCEEEEEeCChHHHHhhcCCCcee--eeCh
Confidence 999999999999999999999999954 679999999999995 59999999999999999999999995 6999
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCC
Q 022268 241 PLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFP 277 (300)
Q Consensus 241 ~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~ 277 (300)
++|++|+.+..+.++++||+||.|+++||+.+|+.|+
T Consensus 153 ~~l~~~i~~~~~~~~~vVVsPD~Ga~~rA~~lA~~L~ 189 (319)
T PRK04923 153 PLLLADIWRAYGTDNLIVVSPDVGGVVRARAVAKRLD 189 (319)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCchHHHHHHHHHHcC
Confidence 9999999653245889999999999999999996553
No 5
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.5e-52 Score=401.26 Aligned_cols=185 Identities=22% Similarity=0.364 Sum_probs=173.9
Q ss_pred ccCCCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHHHH
Q 022268 81 ASRTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSV 158 (300)
Q Consensus 81 ~~~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELLll 158 (300)
-.+..++|+||+|+++++||++||+.| |++++++++++|||| |++|++.++|||+|||||||++.| |++||||++
T Consensus 15 ~~~~~~~~~i~~g~~~~~la~~ia~~l-g~~l~~~~~~~FpDG--E~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~ 91 (330)
T PRK02812 15 LLSDNNRLRLFSGSSNPALAQEVARYL-GMDLGPMIRKRFADG--ELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIM 91 (330)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHh-CCCceeeEEEECCCC--CEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHH
Confidence 345668899999999999999999999 799999999999999 699999999999999999999766 789999999
Q ss_pred HHhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcc
Q 022268 159 IYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFES 238 (300)
Q Consensus 159 idAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~ 238 (300)
++|||++||++||+|+||||||||||++++|||+|+|++|+||+. +|+|+|||||+|++++++||++|+++ |+
T Consensus 92 ~~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~-----~g~d~vitvDlH~~~~~~fF~ipv~n--l~ 164 (330)
T PRK02812 92 VDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITK-----AGADRVLAMDLHSAQIQGYFDIPCDH--VY 164 (330)
T ss_pred HHHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHh-----cCCCEEEEEECCchHHcCccCCCcee--ee
Confidence 999999999999999999999999999999999999999999994 59999999999999999999999995 69
Q ss_pred cHHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhC
Q 022268 239 AIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHF 276 (300)
Q Consensus 239 a~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l 276 (300)
+.+.+++||++. +.++++||+||.|+.+||+.+|+.|
T Consensus 165 ~~~~l~~~i~~~-~~~~~vvVsPD~gg~~ra~~~A~~L 201 (330)
T PRK02812 165 GSPVLLDYLASK-NLEDIVVVSPDVGGVARARAFAKKL 201 (330)
T ss_pred ChHHHHHHHHhc-CCCCeEEEEECCccHHHHHHHHHHh
Confidence 999999999764 4689999999999999999999655
No 6
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2e-52 Score=398.77 Aligned_cols=190 Identities=28% Similarity=0.388 Sum_probs=175.6
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHHHHHHhcc
Q 022268 86 KKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVIYALP 163 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELLllidAlr 163 (300)
++|+||+|+++++||++||++| |++++++++++|||| |++|++.++|||+||+||||+++| |++||||++++|||
T Consensus 4 ~~~~i~~~~~~~~la~~ia~~l-g~~l~~~~~~~FpdG--E~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr 80 (320)
T PRK02269 4 SDLKLFALSSNKELAEKVAQEI-GIELGKSSVRQFSDG--EIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALK 80 (320)
T ss_pred CCeEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC--CEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHH
Confidence 5799999999999999999999 799999999999999 699999999999999999999865 78999999999999
Q ss_pred cCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHH
Q 022268 164 KLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLL 243 (300)
Q Consensus 164 ragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL 243 (300)
++||++||+|+||||||||||++++|||+|+|++|+||++ +|+|+|+|+|+|++++++||++|+++ +++.|++
T Consensus 81 ~~~a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~~-----~g~d~vit~D~H~~~~~~~f~~p~~~--l~~~p~l 153 (320)
T PRK02269 81 RASAESINVVMPYYGYARQDRKARSREPITSKLVANMLEV-----AGVDRLLTVDLHAAQIQGFFDIPVDH--LMGAPLI 153 (320)
T ss_pred HhCCCeEEEEEeccccchhhcccCCCCCchHHHHHHHHhh-----cCCCEEEEECCChHHHhccccCCchh--hhhHHHH
Confidence 9999999999999999999999999999999999999995 59999999999999999999999995 6999999
Q ss_pred HHHHhcC-CCCCCeEEEeCCcccHHHHHHHHhhCCCccccccccccCCceeeeee
Q 022268 244 LNRLQQL-PDSDNISIAFPDDGAWKRFHKQLQHFPMVLRMPYVDLYCVHHAPAYK 297 (300)
Q Consensus 244 ~~~l~~~-~~~~n~vIVSPD~GA~kRA~~~A~~l~~vv~~~~~~~lg~~~a~~~k 297 (300)
++|+++. .+.++++||+||.|+.+||+.+| ..||++++++.|
T Consensus 154 ~~~i~~~~~~~~~~vvVsPd~G~~~~A~~lA------------~~lg~~~~~~~k 196 (320)
T PRK02269 154 ADYFDRRGLVGDDVVVVSPDHGGVTRARKLA------------QFLKTPIAIIDK 196 (320)
T ss_pred HHHHHHhCCCCCCcEEEEECccHHHHHHHHH------------HHhCCCEEEEEe
Confidence 9999764 24478999999999999999999 555555555554
No 7
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=2.6e-52 Score=411.03 Aligned_cols=203 Identities=21% Similarity=0.261 Sum_probs=181.8
Q ss_pred ccccCCCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHH
Q 022268 79 ESASRTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQL 156 (300)
Q Consensus 79 ~~~~~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELL 156 (300)
++-.+.+++|+||+|+++++||++||+.| |++++++++++|||| |++|++.++|||+|||||||+++| |+|||||
T Consensus 111 ~~~~~~~~~m~I~sgs~~~~LA~~IA~~L-g~~l~~~~~~rFpDG--E~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELL 187 (439)
T PTZ00145 111 RPFEKKMENAILFSGSSNPLLSKNIADHL-GTILGRVHLKRFADG--EVSMQFLESIRGKDVYIIQPTCPPVNENLIELL 187 (439)
T ss_pred CchhhccCCeEEEECCCCHHHHHHHHHHh-CCCceeeEEEECCCC--CEEEEECCCcCCCeEEEEecCCCCCcHHHHHHH
Confidence 44445568899999999999999999999 799999999999999 699999999999999999999876 7899999
Q ss_pred HHHHhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccC--CCccc
Q 022268 157 SVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFG--DTILP 234 (300)
Q Consensus 157 llidAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~--~~v~~ 234 (300)
++++|||++||++||+||||||||||||++.+|||||+|++|+||+. +|+|+|||||+|++|+++||+ +|+++
T Consensus 188 llidAlr~agAkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~~-----~G~d~VitvDlHs~~i~~fF~~~iPvdn 262 (439)
T PTZ00145 188 LMISTCRRASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEA-----MGVDRVVAIDLHSGQIQGFFGPRVPVDN 262 (439)
T ss_pred HHHHHHHHhccCeEEEEeecccchheecccCCCCChhHHHHHHHHHH-----cCCCeEEEEecChHHHHhhcCCCccccc
Confidence 99999999999999999999999999999999999999999999994 599999999999999999997 79985
Q ss_pred CCcccHHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCCccccccccccCCceeeeeec
Q 022268 235 CFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMVLRMPYVDLYCVHHAPAYKN 298 (300)
Q Consensus 235 l~L~a~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~vv~~~~~~~lg~~~a~~~k~ 298 (300)
|++.+.+++|+++. +..++|||+||.|+.+||+.+|+.|+.- ..-+++++++.|+
T Consensus 263 --l~a~~~~a~~i~~~-~l~~pVVVsPD~Ga~~RAr~~A~~L~~~------~~~~~~~avl~K~ 317 (439)
T PTZ00145 263 --LEAQLIGLDYFTKK-DLYKPVIVSPDAGGVYRARKFQDGLNHR------GISDCGIAMLIKQ 317 (439)
T ss_pred --ccccHHHHHHHhhc-CCCccEEEccCcchHHHHHHHHHHhccc------cccCCCEEEEEee
Confidence 69999999999764 4578999999999999999999655411 0012677777775
No 8
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=5.6e-52 Score=396.32 Aligned_cols=185 Identities=23% Similarity=0.384 Sum_probs=172.5
Q ss_pred CCCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHHHHHH
Q 022268 83 RTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVIY 160 (300)
Q Consensus 83 ~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELLllid 160 (300)
-++++|+||+|+++++||++||+.| |++++++++++|||| |+++++.++|||+||+||||++.| |++||||++++
T Consensus 5 ~~~~~~~i~~~~~~~~la~~ia~~l-g~~l~~~~~~~FpdG--E~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~ 81 (323)
T PRK02458 5 YADKQIKLFSLNSNLEIAEKIAQAA-GVPLGKLSSRQFSDG--EIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMID 81 (323)
T ss_pred cCCCCeEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC--CEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHH
Confidence 3567899999999999999999999 799999999999999 699999999999999999999765 78999999999
Q ss_pred hcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccH
Q 022268 161 ALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAI 240 (300)
Q Consensus 161 AlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~ 240 (300)
|||++||++|++|+||||||||||++++|||+|+|++|+||++ +|+|+|+|+|+|++++++||++|+++ |++.
T Consensus 82 alr~~~a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~~-----~g~d~vitvD~H~~~i~~~F~~p~~n--l~~~ 154 (323)
T PRK02458 82 ACKRASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVK-----AGVDRVLTLDLHAVQVQGFFDIPVDN--LFTV 154 (323)
T ss_pred HHHHcCCceEEEEEeccccchhhcccCCCCCchHHHHHHHHhh-----cCCCeEEEEecCcHHhhccccCCceE--EEEH
Confidence 9999999999999999999999999999999999999999995 59999999999999999999999995 6999
Q ss_pred HHHHHHHhcC-CCCCCeEEEeCCcccHHHHHHHHhhCC
Q 022268 241 PLLLNRLQQL-PDSDNISIAFPDDGAWKRFHKQLQHFP 277 (300)
Q Consensus 241 ~lL~~~l~~~-~~~~n~vIVSPD~GA~kRA~~~A~~l~ 277 (300)
|++++|+++. .+.++++||+||.|+.+||+.+|+.|+
T Consensus 155 p~~~~~l~~~~~~~~~~vvV~pd~Ga~~~A~~la~~L~ 192 (323)
T PRK02458 155 PLFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLAEYLD 192 (323)
T ss_pred HHHHHHHHHhCCCCCceEEEEECCChHHHHHHHHHHhC
Confidence 9999999764 234789999999999999999995543
No 9
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-52 Score=389.38 Aligned_cols=189 Identities=31% Similarity=0.459 Sum_probs=180.3
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHHHHHHhc
Q 022268 85 MKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVIYAL 162 (300)
Q Consensus 85 ~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELLllidAl 162 (300)
+++++||+|.+|++||++||++| |++++++.+++|+|| |++|++.++|||+||||+||.+++ |+|||||+|++||
T Consensus 1 ~~~i~lf~g~shp~La~~I~~~l-gi~l~~v~~kkf~ng--e~~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac 77 (316)
T KOG1448|consen 1 MKNIKLFSGDSHPELAERIAARL-GIELGKVNLKKFSNG--ETSVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINAC 77 (316)
T ss_pred CCceEEEcCCCCHHHHHHHHHHh-CCCcceeeeEEccCC--cEEEecccccccCcEEEeccCCCcchHHHHHHHHHHHhc
Confidence 46799999999999999999999 799999999999999 699999999999999999999998 8999999999999
Q ss_pred ccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHH
Q 022268 163 PKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPL 242 (300)
Q Consensus 163 rragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~l 242 (300)
++++|++||+||||||||||||+.+.+.+++||++|+||. .+|+|+|||+|+|..|++|||++||++ |++.|.
T Consensus 78 ~~asa~~vTaViP~Fpyarq~~k~~~r~~i~aklVanlls-----~aG~dhvItmDlHa~Q~qgfF~ipVdn--ly~~p~ 150 (316)
T KOG1448|consen 78 KRASASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLS-----SAGADHVITMDLHASQIQGFFDIPVDN--LYAEPA 150 (316)
T ss_pred chhhhheeEEeccCCccccchhhhhhhhhHHHHHHHhhhh-----ccCCceEEEecccchhhCceeeccchh--hccchH
Confidence 9999999999999999999999999999999999999999 579999999999999999999999996 699999
Q ss_pred HHHHHhc-CCCCCCeEEEeCCcccHHHHHHHHhhCCCccccc
Q 022268 243 LLNRLQQ-LPDSDNISIAFPDDGAWKRFHKQLQHFPMVLRMP 283 (300)
Q Consensus 243 L~~~l~~-~~~~~n~vIVSPD~GA~kRA~~~A~~l~~vv~~~ 283 (300)
+.+|++. .++.++.+|||||+|++||++++|++|++.+|..
T Consensus 151 ~l~~ir~~~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali 192 (316)
T KOG1448|consen 151 VLNYIRENIPDSENAVIVSPDAGGAKRVTSLADRLNLDFALI 192 (316)
T ss_pred HHHHHHhhCCCccceEEECCCcchhhhhHHHHHhhcchhhhh
Confidence 9999987 4689999999999999999999999998877643
No 10
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=2.8e-51 Score=388.02 Aligned_cols=187 Identities=21% Similarity=0.239 Sum_probs=172.1
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccC
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKL 165 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrra 165 (300)
.++||+|+++++||++||+.| |++++++++++|||| |++|++.++|||+|||||||+++| |++||||++++|||++
T Consensus 2 ~~~i~~~~~~~~la~~ia~~l-g~~~~~~~~~~F~dG--E~~v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~ 78 (301)
T PRK07199 2 QPLLLALPGNEAAAGRLAAAL-GVEVGRIELHRFPDG--ESYVRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAAREL 78 (301)
T ss_pred ceEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC--CEEEEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHc
Confidence 368999999999999999999 799999999999999 699999999999999999999765 7899999999999999
Q ss_pred CCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCCh---hhhhcccCCCcccCCcccHHH
Q 022268 166 FVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHA---LQERFYFGDTILPCFESAIPL 242 (300)
Q Consensus 166 gAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs---~qi~~fF~~~v~~l~L~a~~l 242 (300)
||++||+||||||||||||++++|||+|+|++|+||++ |+|||||+|+|+ .++++||++|+++ +++.+.
T Consensus 79 ~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~------~~d~vit~DlH~~~~~~~~~~f~ip~~n--l~~~~~ 150 (301)
T PRK07199 79 GARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSG------SFDRLVTVDPHLHRYPSLSEVYPIPAVV--LSAAPA 150 (301)
T ss_pred CCCeEEEEeecccccccccccCCCCCccHHHHHHHHHh------hcCeEEEEeccchhhHHhcCcccCCccc--cchHHH
Confidence 99999999999999999999999999999999999992 899999999997 7899999999995 699999
Q ss_pred HHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCCccccccccccCCceeeeeec
Q 022268 243 LLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMVLRMPYVDLYCVHHAPAYKN 298 (300)
Q Consensus 243 L~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~vv~~~~~~~lg~~~a~~~k~ 298 (300)
+++|+++. .++++||+||.|+.+||+.+| ..||+++++++|+
T Consensus 151 la~~l~~~--~~~~vVVsPd~g~~~~a~~la------------~~l~~~~~~~~K~ 192 (301)
T PRK07199 151 IAAWIRAH--VPRPLLIGPDEESEQWVAAVA------------ERAGAPHAVLRKT 192 (301)
T ss_pred HHHHHHhc--CCCcEEEEeCCChHHHHHHHH------------HHhCCCEEEEEEE
Confidence 99999763 468999999999999999999 5555566666653
No 11
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.4e-50 Score=382.85 Aligned_cols=178 Identities=26% Similarity=0.377 Sum_probs=168.1
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHHHHHHhcccC
Q 022268 88 VCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVIYALPKL 165 (300)
Q Consensus 88 ~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELLllidAlrra 165 (300)
|+||+|+++++||++||+.| |++++++++++|||| |+++++.++|+|+||+||||++.| |++|||+++++|+|++
T Consensus 1 ~~i~~~~~~~~la~~ia~~l-g~~~~~~~~~~FpdG--E~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ 77 (309)
T PRK01259 1 MKLFAGNANPELAEKIAKYL-GIPLGKASVGRFSDG--EISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRA 77 (309)
T ss_pred CEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC--CEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 68999999999999999999 799999999999999 699999999999999999999655 7899999999999999
Q ss_pred CCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHHHH
Q 022268 166 FVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLN 245 (300)
Q Consensus 166 gAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~~ 245 (300)
||++||+|+||||||||||++++||++|+|++|+||++ +|+|+|+|+|+|++++++||++|+++ |++.+++++
T Consensus 78 ga~~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~~-----~g~d~vitvD~H~~~~~~~f~~p~~~--l~~~~~l~~ 150 (309)
T PRK01259 78 SAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLET-----AGADRVLTMDLHADQIQGFFDIPVDN--LYGSPILLE 150 (309)
T ss_pred CCceEEEEeeccccchhhhhhccCCCchHHHHHHHHhh-----cCCCEEEEEcCChHHHcCcCCCCcee--eeecHHHHH
Confidence 99999999999999999999999999999999999995 59999999999999999999999985 699999999
Q ss_pred HHhcCCCCCCeEEEeCCcccHHHHHHHHhhC
Q 022268 246 RLQQLPDSDNISIAFPDDGAWKRFHKQLQHF 276 (300)
Q Consensus 246 ~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l 276 (300)
|+++. +.++++||+||.||.+||+.+|+.|
T Consensus 151 ~i~~~-~~~~~vvv~pd~Gg~~~A~~la~~L 180 (309)
T PRK01259 151 DIKQK-NLENLVVVSPDVGGVVRARALAKRL 180 (309)
T ss_pred HHHhc-CCCCcEEEEECCCcHHHHHHHHHHh
Confidence 99764 5688999999999999999999544
No 12
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=3.2e-50 Score=381.32 Aligned_cols=169 Identities=25% Similarity=0.419 Sum_probs=158.9
Q ss_pred HHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHHHHHHhcccCCCceEEEEecc
Q 022268 99 LAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVIYALPKLFVSSFTLVLPF 176 (300)
Q Consensus 99 LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELLllidAlrragAk~ItlVIPY 176 (300)
||++||+.| |++++++++++|||| |++|++.++|||+|||||||++.| |++||||++++|||++||++||+||||
T Consensus 1 la~~ia~~l-~~~l~~~~~~~F~DG--E~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPY 77 (304)
T PRK03092 1 LAEEVAKEL-GVEVTPTTAYDFANG--EIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPF 77 (304)
T ss_pred CHHHHHHHh-CCceeeeEEEECCCC--CEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 689999999 799999999999999 699999999999999999999876 789999999999999999999999999
Q ss_pred CCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHHHHHHhcCCCCCCe
Q 022268 177 FPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNI 256 (300)
Q Consensus 177 f~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~~~l~~~~~~~n~ 256 (300)
||||||||++++|||+|+|++|+||++ +|+|+|+|+|+|++++++||++|+++ |++.++|++||.+..+.+++
T Consensus 78 l~YaRQDr~~~~~e~isak~va~lL~~-----~g~d~vitvD~H~~~~~~~f~~p~~~--l~~~~~la~~i~~~~~~~~~ 150 (304)
T PRK03092 78 YPYARQDKKHRGREPISARLVADLFKT-----AGADRIMTVDLHTAQIQGFFDGPVDH--LFAMPLLADYVRDKYDLDNV 150 (304)
T ss_pred ccccccccccCCCCCccHHHHHHHHHh-----cCCCeEEEEecChHHHHhhcCCCeee--EechHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999995 59999999999999999999999995 79999999999764345889
Q ss_pred EEEeCCcccHHHHHHHHhhCC
Q 022268 257 SIAFPDDGAWKRFHKQLQHFP 277 (300)
Q Consensus 257 vIVSPD~GA~kRA~~~A~~l~ 277 (300)
+||+||.||.+||+.+|+.|+
T Consensus 151 vvVspd~Ga~~~a~~la~~L~ 171 (304)
T PRK03092 151 TVVSPDAGRVRVAEQWADRLG 171 (304)
T ss_pred EEEEecCchHHHHHHHHHHcC
Confidence 999999999999999995554
No 13
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.1e-49 Score=374.07 Aligned_cols=176 Identities=23% Similarity=0.311 Sum_probs=164.4
Q ss_pred EEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCCC
Q 022268 89 CLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLFV 167 (300)
Q Consensus 89 ~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrragA 167 (300)
+||+|+++++||++||+.| |++++++++++|||| |++|+++++|||+||+|+|++.++ |++||||++++|||++||
T Consensus 1 ~i~~~~~~~~la~~ia~~l-~~~~~~~~~~~FpdG--E~~v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga 77 (285)
T PRK00934 1 MIIGGSASQLLASEVARLL-NTELALVETKRFPDG--ELYVRILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGA 77 (285)
T ss_pred CeEeCCCCHHHHHHHHHHH-CCceEeeEEEECCCC--CEEEEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 4799999999999999999 799999999999999 699999999999999999998775 669999999999999999
Q ss_pred ceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHHHHHH
Q 022268 168 SSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRL 247 (300)
Q Consensus 168 k~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~~~l 247 (300)
++||+|+||||||||||++++||++++|++|+||++ +| |+|+|+|+|++++++||++|+++ +++.+.|++|+
T Consensus 78 ~~i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~~-----~~-d~vitvD~H~~~~~~~f~~~~~~--l~a~~~la~~i 149 (285)
T PRK00934 78 KSITLVIPYLGYARQDKRFKPGEPISARAIAKIISA-----YY-DRIITINIHEPSILEFFPIPFIN--LDAAPLIAEYI 149 (285)
T ss_pred CeEEEEecCCcccccccccCCCCCccHHHHHHHHHH-----hc-CEEEEEcCChHHHcCcCCCcEeE--eecHHHHHHHH
Confidence 999999999999999999999999999999999995 47 99999999999999999999985 79999999999
Q ss_pred hcCCCCCCeEEEeCCcccHHHHHHHHhhCC
Q 022268 248 QQLPDSDNISIAFPDDGAWKRFHKQLQHFP 277 (300)
Q Consensus 248 ~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~ 277 (300)
.+ +.++++||+||.|+.+||..+|+.++
T Consensus 150 ~~--~~~~~vvv~pd~Ga~~~a~~lA~~l~ 177 (285)
T PRK00934 150 GD--KLDDPLVLAPDKGALELAKEAAEILG 177 (285)
T ss_pred Hh--cCCCCEEEEeCCchHHHHHHHHHHhC
Confidence 65 44678999999999999999995443
No 14
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=1.9e-49 Score=386.13 Aligned_cols=191 Identities=17% Similarity=0.205 Sum_probs=172.1
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHh---------------C----CC--ceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEE
Q 022268 85 MKKVCLFYCPETHSLAERVAAQS---------------D----AI--ELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFL 143 (300)
Q Consensus 85 ~~~~~Ifsgsss~~LA~~IA~~L---------------~----gi--~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~II 143 (300)
..+|+||+|+++++||++||+.| + |+ +++++++++|||| |++|+++++|||+|||||
T Consensus 6 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDG--E~~vri~~~Vrg~dV~iv 83 (382)
T PRK06827 6 VGSLGIIALPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNG--EAKGEILESVRGKDIYIL 83 (382)
T ss_pred CCceEEEECCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCC--CEEEEECCCCCCCeEEEE
Confidence 46799999999999999999999 3 44 4999999999999 699999999999999999
Q ss_pred eecCC----------------chhHHHHHHHHHhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCC
Q 022268 144 ASFSS----------------PGKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTS 207 (300)
Q Consensus 144 qS~~~----------------pd~lmELLllidAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~ 207 (300)
||+++ +|++||||++++||| +||++||+||||||||||||+ .+|||+|+|++|+||++
T Consensus 84 qs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY~~YaRQDr~-~~~e~itak~vA~lL~~---- 157 (382)
T PRK06827 84 QDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYESRQHKR-KGRESLDCALALQELEE---- 157 (382)
T ss_pred ecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeecccccccccc-cCCCCccHHHHHHHHHH----
Confidence 99863 378999999999999 999999999999999999999 79999999999999994
Q ss_pred CCCCCEEEEecCChhhhhcccC-CCcccCCcccHHHHHHHHhcCC-----CCCCeEEEeCCcccHHHHHHHHhhCCCccc
Q 022268 208 RGGPTSLVTFDIHALQERFYFG-DTILPCFESAIPLLLNRLQQLP-----DSDNISIAFPDDGAWKRFHKQLQHFPMVLR 281 (300)
Q Consensus 208 ~aG~drVItvDlHs~qi~~fF~-~~v~~l~L~a~~lL~~~l~~~~-----~~~n~vIVSPD~GA~kRA~~~A~~l~~vv~ 281 (300)
+|+|+|||||+|++|+++||+ .|+++ +++.+.+++|+++.. +.++++||+||.||++||+.+|
T Consensus 158 -~G~d~vitvDlHs~~i~~~F~~~pvdn--l~a~~~l~~~i~~~i~~l~~d~~~~VVVsPD~Gg~~rA~~~A-------- 226 (382)
T PRK06827 158 -LGVDNIITFDAHDPRIENAIPLMGFEN--LYPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYA-------- 226 (382)
T ss_pred -cCCCeEEEecCChHHhcccCCCCCcCC--cCchHHHHHHHHHhcccccccCCCcEEEEECccchHHHHHHH--------
Confidence 599999999999999999999 48985 699999999996531 2378999999999999999999
Q ss_pred cccccccCCceeeeeec
Q 022268 282 MPYVDLYCVHHAPAYKN 298 (300)
Q Consensus 282 ~~~~~~lg~~~a~~~k~ 298 (300)
+.||+++++++|+
T Consensus 227 ----~~Lg~~~ai~~K~ 239 (382)
T PRK06827 227 ----SVLGVDLGLFYKR 239 (382)
T ss_pred ----HHhCCCEEEEEcc
Confidence 6666677776664
No 15
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=2.7e-49 Score=374.82 Aligned_cols=179 Identities=25% Similarity=0.394 Sum_probs=168.0
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEE-eecCCc--hhHHHHHHHHHhccc
Q 022268 88 VCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFL-ASFSSP--GKIFEQLSVIYALPK 164 (300)
Q Consensus 88 ~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~II-qS~~~p--d~lmELLllidAlrr 164 (300)
|+||+|+++++||++||+.| |++++++++++|||| |+++++.++|+|+||+|+ ||++.| |++|||+++++|+|+
T Consensus 1 ~~i~~~~~~~~la~~ia~~l-g~~~~~~~~~~FpdG--E~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~ 77 (308)
T TIGR01251 1 MKIFSGSSNQELAQKVAKNL-GLPLGDVEVKRFPDG--ELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKR 77 (308)
T ss_pred CEEEECCCCHHHHHHHHHHh-CCeeeeeEEEECCCC--CEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHH
Confidence 57999999999999999999 799999999999999 699999999999999999 999754 789999999999999
Q ss_pred CCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHHH
Q 022268 165 LFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLL 244 (300)
Q Consensus 165 agAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~ 244 (300)
+||++||+|+||||||||||++++||++|+|++|+||++ +|+|+|+|+|+|++++++||++|+++ +++.+.|+
T Consensus 78 ~ga~~i~~v~PYl~Y~RqDr~~~~ge~is~~~~a~ll~~-----~g~d~vit~DlHs~~~~~~f~ip~~~--l~a~~~l~ 150 (308)
T TIGR01251 78 ASAKSITAVIPYYGYARQDKKFKSREPISAKLVANLLET-----AGADRVLTVDLHSPQIQGFFDVPVDN--LYASPVLA 150 (308)
T ss_pred cCCCeEEEEEEecccchhccccCCCCCchHHHHHHHHHH-----cCCCEEEEecCChHHhcCcCCCceec--ccCHHHHH
Confidence 999999999999999999999999999999999999995 59999999999999999999999985 69999999
Q ss_pred HHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCC
Q 022268 245 NRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFP 277 (300)
Q Consensus 245 ~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~ 277 (300)
+|+.+. ..++++||+||.|+.+||+.+|+.|+
T Consensus 151 ~~i~~~-~~~~~viv~pd~g~~~~A~~lA~~Lg 182 (308)
T TIGR01251 151 EYLKKK-ILDNPVVVSPDAGGVERAKKVADALG 182 (308)
T ss_pred HHHHhh-CCCCCEEEEECCchHHHHHHHHHHhC
Confidence 999874 35789999999999999999995443
No 16
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=3.3e-48 Score=367.26 Aligned_cols=170 Identities=22% Similarity=0.375 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHHHHHHhcccCCCceEEEEe
Q 022268 97 HSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVIYALPKLFVSSFTLVL 174 (300)
Q Consensus 97 ~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELLllidAlrragAk~ItlVI 174 (300)
++||++||+.| |++++++++++|||| |+++++.++|||+||+||||++.| |++||||++++|||++||++||+|+
T Consensus 1 ~~lA~~ia~~l-g~~l~~~~~~~FpdG--E~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~Vi 77 (302)
T PLN02369 1 PALSQEIACYL-GLELGKITIKRFADG--EIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVI 77 (302)
T ss_pred ChHHHHHHHHh-CCceeeeEEEECCCC--CEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 37999999999 799999999999999 699999999999999999999865 7899999999999999999999999
Q ss_pred ccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHHHHHHhcC-CCC
Q 022268 175 PFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQL-PDS 253 (300)
Q Consensus 175 PYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~~~l~~~-~~~ 253 (300)
||||||||||++.+|||+|+|++|+||++ +|+|+|+|+|+|++++++||++|+++ +++.+.+++|+.+. .+.
T Consensus 78 PYl~YsRQDr~~~~~e~isak~va~lL~~-----~g~d~vi~vDlHs~~i~~~F~ip~~~--l~~~~~~~~~i~~~~~~~ 150 (302)
T PLN02369 78 PYFGYARADRKTQGRESIAAKLVANLITE-----AGADRVLACDLHSGQSMGYFDIPVDH--VYGQPVILDYLASKTISS 150 (302)
T ss_pred ecccccccccccCCCCCchHHHHHHHHHh-----cCCCEEEEEECCchHHhhccCCceec--ccchHHHHHHHHHhCCCC
Confidence 99999999999999999999999999995 59999999999999999999999995 69999999999764 233
Q ss_pred CCeEEEeCCcccHHHHHHHHhhC
Q 022268 254 DNISIAFPDDGAWKRFHKQLQHF 276 (300)
Q Consensus 254 ~n~vIVSPD~GA~kRA~~~A~~l 276 (300)
++++||+||.|+.+||+.+++.+
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l 173 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKL 173 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHc
Confidence 78999999999999999999655
No 17
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=100.00 E-value=5.1e-41 Score=308.16 Aligned_cols=183 Identities=23% Similarity=0.306 Sum_probs=172.2
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHHHHHHhc
Q 022268 85 MKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVIYAL 162 (300)
Q Consensus 85 ~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELLllidAl 162 (300)
..+|++|+|+++++||+.|++.| |+++++..+.+-+|+ |++|+|.++|||+||||||+...+ .++||||+|++||
T Consensus 6 ~sg~vl~s~ns~~elak~vaerl-gi~~g~~~vy~~tnr--et~vei~~svrgkdvfiiqt~skdvn~~vmellim~yac 82 (354)
T KOG1503|consen 6 SSGMVLFSGNSHPELAKMVAERL-GIELGKATVYQKTNR--ETRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYAC 82 (354)
T ss_pred cCCeEEEcCCCCHHHHHHHHHHh-cccccceEEEecCCC--ceEEEhhhhccCceEEEEEecCcccchHHHHHHHHHHHH
Confidence 35799999999999999999999 799999999999999 699999999999999999999876 6899999999999
Q ss_pred ccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHH
Q 022268 163 PKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPL 242 (300)
Q Consensus 163 rragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~l 242 (300)
|.+.|++|+.|||||||++|.|+. .+..|..|++|.|+. .+|.+|+||+|||..++||||++|||+ |.++|.
T Consensus 83 kts~aksiigvipy~pyskqckmr-krgsiv~klla~mmc-----kaglthlitmdlhqkeiqgff~~pvdn--lraspf 154 (354)
T KOG1503|consen 83 KTSCAKSIIGVIPYLPYSKQCKMR-KRGSIVSKLLASMMC-----KAGLTHLITMDLHQKEIQGFFSIPVDN--LRASPF 154 (354)
T ss_pred hhhhhhceEEEeecCccchhhhhh-hcccHHHHHHHHHHH-----hcccceEEeehhhhHhhcceecccccc--cccCHH
Confidence 999999999999999999999974 577899999999999 679999999999999999999999995 699999
Q ss_pred HHHHHhcC-CCCCCeEEEeCCcccHHHHHHHHhhCCC
Q 022268 243 LLNRLQQL-PDSDNISIAFPDDGAWKRFHKQLQHFPM 278 (300)
Q Consensus 243 L~~~l~~~-~~~~n~vIVSPD~GA~kRA~~~A~~l~~ 278 (300)
|.+|+++. ++.+|.|||+-..|.+|||.+||++|.+
T Consensus 155 llqyiqe~ipdyrnavivaksp~~akka~syaerlrl 191 (354)
T KOG1503|consen 155 LLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRL 191 (354)
T ss_pred HHHHHHHhCccccceEEEecCcchhhHHHhHHHHHhh
Confidence 99999875 6999999999999999999999976654
No 18
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=100.00 E-value=7.8e-39 Score=265.57 Aligned_cols=112 Identities=29% Similarity=0.517 Sum_probs=97.5
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc--hhHHHHHHHHHhcccC
Q 022268 88 VCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVIYALPKL 165 (300)
Q Consensus 88 ~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p--d~lmELLllidAlrra 165 (300)
|+||+|+++++||++||+.| |++++++++++|||| |++|++.+++||+||||||++++| |++||||++++|+|++
T Consensus 1 m~I~~g~~~~~La~~ia~~L-~~~~~~~~~~~F~dG--E~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~ 77 (116)
T PF13793_consen 1 MVIFSGSSSQDLAERIAEAL-GIPLGKVETKRFPDG--ETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRA 77 (116)
T ss_dssp EEEEESSSGHHHHHHHHHHT-TS-EE-EEEEE-TTS---EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCHHHHHHHHHHh-CCceeeeEEEEcCCC--CEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHc
Confidence 78999999999999999999 799999999999999 699999999999999999999987 8899999999999999
Q ss_pred CCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhc
Q 022268 166 FVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSN 203 (300)
Q Consensus 166 gAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~s 203 (300)
||++||+|+||||||||||+ .+|||+|+|++|+||++
T Consensus 78 ~a~~i~~ViPYl~YaRQDr~-~~ge~isak~~a~lL~~ 114 (116)
T PF13793_consen 78 GAKRITLVIPYLPYARQDRR-KPGEPISAKVVAKLLSA 114 (116)
T ss_dssp TBSEEEEEESS-TTTTSSSS-STTC--HHHHHHHHHHH
T ss_pred CCcEEEEeccchhhhhhccC-CCCCcchHHHHHHHHHh
Confidence 99999999999999999999 99999999999999995
No 19
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.57 E-value=1.8e-06 Score=82.48 Aligned_cols=136 Identities=13% Similarity=0.079 Sum_probs=102.6
Q ss_pred cEEEEe-CCCCHHHHHHHHHHhCCCceeeeEEeee-CCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhccc
Q 022268 87 KVCLFY-CPETHSLAERVAAQSDAIELRSINWRKF-KDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPK 164 (300)
Q Consensus 87 ~~~Ifs-gsss~~LA~~IA~~L~gi~l~~i~~~rF-pDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlrr 164 (300)
+.+|++ ..+...+|..+|+.| |.++..+...++ ++|| .....+.++++|++|+||..+.+... .++.+++++++
T Consensus 160 ~~viv~pd~g~~~~A~~lA~~L-g~~~~~i~k~r~~~~~~-~~~~~~~~~v~g~~vliVDDii~tG~--Tl~~a~~~l~~ 235 (308)
T TIGR01251 160 NPVVVSPDAGGVERAKKVADAL-GCPLAIIDKRRISATNE-VEVMNLVGDVEGKDVVIVDDIIDTGG--TIAKAAEILKS 235 (308)
T ss_pred CCEEEEECCchHHHHHHHHHHh-CCCEEEEEEEecCCCCE-EEEEecccccCCCEEEEEccccCCHH--HHHHHHHHHHh
Confidence 444444 566778999999999 799998988999 8885 23344567899999999999987744 56777899999
Q ss_pred CCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHHH
Q 022268 165 LFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLL 244 (300)
Q Consensus 165 agAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~ 244 (300)
.|+++|.++.++- ...+ ..+.++.+ +|+++|++.|.|... .+|+ ++.. ++..++|+
T Consensus 236 ~ga~~v~~~~th~--------v~~~-----~a~~~l~~------~~~~~iv~tdt~~~~--~~~~-~~~~--v~va~~la 291 (308)
T TIGR01251 236 AGAKRVIAAATHG--------VFSG-----PAIERIAN------AGVEEVIVTNTIPHE--KHKP-KVSV--ISVAPLIA 291 (308)
T ss_pred cCCCEEEEEEEee--------ecCc-----HHHHHHHh------CCCCEEEEeCCCCcc--ccCC-CcEE--EEhHHHHH
Confidence 9999999999831 1122 23356666 489999999999864 3555 4443 57799999
Q ss_pred HHHhcC
Q 022268 245 NRLQQL 250 (300)
Q Consensus 245 ~~l~~~ 250 (300)
+.|++.
T Consensus 292 ~~i~~~ 297 (308)
T TIGR01251 292 EAIRRI 297 (308)
T ss_pred HHHHHH
Confidence 999764
No 20
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=97.70 E-value=7e-05 Score=65.92 Aligned_cols=84 Identities=17% Similarity=-0.004 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHHHHHHhcCC--CCCCeEEEeCCcccHHHHHHH
Q 022268 195 FTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLP--DSDNISIAFPDDGAWKRFHKQ 272 (300)
Q Consensus 195 k~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~~~l~~~~--~~~n~vIVSPD~GA~kRA~~~ 272 (300)
+.++++|.. .|++++-++|+||.+.++||- ++.. +...|.+.+++.+.. ..+..+|++|+.|+..+|..+
T Consensus 3 ~~~~~~l~~-----~ga~~~g~f~L~SG~~s~~y~-d~~~--l~~~p~~~~~l~~~l~~~~~~d~Vvg~~~gGi~~A~~~ 74 (170)
T PRK13811 3 NTIAELLIS-----YKAIEFGDFTLASGAKSRYYI-DIKT--AITHPALLKEIAAEVAKRYDFDVVAGVAVGGVPLAVAV 74 (170)
T ss_pred HHHHHHHHH-----CCCEEECCEEEccCCcCCEEE-eCch--hccCHHHHHHHHHHHHhhCCCCEEEecCcCcHHHHHHH
Confidence 467888884 599999999999999999993 2221 244555555553311 123458999999999999999
Q ss_pred HhhCCCccccccccccCCceeeeeec
Q 022268 273 LQHFPMVLRMPYVDLYCVHHAPAYKN 298 (300)
Q Consensus 273 A~~l~~vv~~~~~~~lg~~~a~~~k~ 298 (300)
| ..||+++.+++|+
T Consensus 75 a------------~~l~~p~~~~rK~ 88 (170)
T PRK13811 75 S------------LAAGKPYAIIRKE 88 (170)
T ss_pred H------------HHHCCCEEEEecC
Confidence 9 5556666666664
No 21
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.07 E-value=0.027 Score=54.00 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=91.1
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccC
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKL 165 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrra 165 (300)
.+++-.-.+...+|+.+|+.| |+++.-+.-.+..+++.++.....++|.|++|+||-.+.+- ..+. -.+++||+.
T Consensus 162 ~vVVsPd~g~~~~a~~la~~l-~~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl~---~aa~~Lk~~ 237 (301)
T PRK07199 162 PLLIGPDEESEQWVAAVAERA-GAPHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTGRTLI---EAARQLRAA 237 (301)
T ss_pred cEEEEeCCChHHHHHHHHHHh-CCCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcHHHHH---HHHHHHHHC
Confidence 344444566778999999999 78887776667666643343333467899999999888765 4443 566889999
Q ss_pred CCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHHHH
Q 022268 166 FVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLN 245 (300)
Q Consensus 166 gAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~~ 245 (300)
||++|.++.-+- .++.....++.+ +|+++|++-|-+... .++ ++..++|++
T Consensus 238 GA~~V~~~~tHg-------------vfs~~a~~~l~~------~~i~~iv~Tdti~~~------~~~----~sva~lla~ 288 (301)
T PRK07199 238 GAASPDCVVVHA-------------LFAGDAYSALAA------AGIARVVSTDTVPHP------SNA----ISLAPLLAE 288 (301)
T ss_pred CCcEEEEEEEee-------------eCChHHHHHHHh------CCCCEEEEeCCccCC------CCE----EehHHHHHH
Confidence 999999987542 233334445544 489999999977321 111 467999999
Q ss_pred HHhcC
Q 022268 246 RLQQL 250 (300)
Q Consensus 246 ~l~~~ 250 (300)
.|+..
T Consensus 289 ~i~~~ 293 (301)
T PRK07199 289 ALRRE 293 (301)
T ss_pred HHHHH
Confidence 99764
No 22
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.93 E-value=0.033 Score=53.98 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=93.1
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCC-CceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcc
Q 022268 86 KKVCLFYCPETHSLAERVAAQSDA-IELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALP 163 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~g-i~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlr 163 (300)
..++|-.-.+....|+.+|+.| + +++.-+.-.|..+++ .....+..+|.|++|+||-.+.+- ..+ .-.+++|+
T Consensus 167 ~~vVVsPD~Ga~~rA~~lA~~L-~~~~~~~~~K~R~~~~~-~~~~~~~gdv~Gr~viIVDDIidTG~Tl---~~aa~~Lk 241 (319)
T PRK04923 167 NLIVVSPDVGGVVRARAVAKRL-DDADLAIIDKRRPRANV-ATVMNIIGDVQGKTCVLVDDLVDTAGTL---CAAAAALK 241 (319)
T ss_pred CCEEEEECCchHHHHHHHHHHc-CCCCEEEeccccCCCCc-eEEEecccCCCCCEEEEEecccCchHHH---HHHHHHHH
Confidence 3344444566789999999999 5 677766666655553 334555678999999999888765 444 45678899
Q ss_pred cCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHH
Q 022268 164 KLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLL 243 (300)
Q Consensus 164 ragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL 243 (300)
+.||++|.++.-+-=. +...+-++.+ +|+++|++-|-+...........+.. ++..++|
T Consensus 242 ~~GA~~V~~~~THgvf-------------s~~a~~~l~~------s~i~~iv~Tdtip~~~~~~~~~k~~~--isva~ll 300 (319)
T PRK04923 242 QRGALKVVAYITHPVL-------------SGPAVDNINN------SQLDELVVTDTIPLSEAARACAKIRQ--LSVAELL 300 (319)
T ss_pred HCCCCEEEEEEECccc-------------CchHHHHHhh------CCCCEEEEeCCccCchhhcccCCeEE--EEhHHHH
Confidence 9999999998766333 2233345544 48999999998642211111112322 4668999
Q ss_pred HHHHhcC
Q 022268 244 LNRLQQL 250 (300)
Q Consensus 244 ~~~l~~~ 250 (300)
++.|+..
T Consensus 301 a~~i~~~ 307 (319)
T PRK04923 301 AETIRRI 307 (319)
T ss_pred HHHHHHH
Confidence 9999764
No 23
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.74 E-value=0.062 Score=51.04 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=85.8
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeec-CCCCCCCeEEEEeecCCc-hhHHHHHHHHHhccc
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPN-AHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPK 164 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i-~esVrG~dV~IIqS~~~p-d~lmELLllidAlrr 164 (300)
.+++-...+...+|..+|+.| ++++.-+.-.+..++ +..+.. ..++.|++|+||-.+.+- ..+. -++++|++
T Consensus 156 ~vvv~pd~Ga~~~a~~lA~~l-~~~~~~i~k~r~~~~--~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~---~aa~~Lk~ 229 (285)
T PRK00934 156 PLVLAPDKGALELAKEAAEIL-GCEYDYLEKTRISPT--EVEIAPKNLDVKGKDVLIVDDIISTGGTMA---TAIKILKE 229 (285)
T ss_pred CEEEEeCCchHHHHHHHHHHh-CCCEEEEEEEecCCC--eEEEeccccccCCCEEEEEcCccccHHHHH---HHHHHHHH
Confidence 344434566789999999999 788876666666555 344432 346899999999888655 4444 45578899
Q ss_pred CCCceEEEEecc--CCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHH
Q 022268 165 LFVSSFTLVLPF--FPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPL 242 (300)
Q Consensus 165 agAk~ItlVIPY--f~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~l 242 (300)
.||++|.++.-+ |. ....-++.+ .|+++|++.|-+.. ++.. ++..++
T Consensus 230 ~GA~~V~~~~~H~i~~---------------~~a~~~l~~------~~i~~i~~tnti~~--------~~~~--~~va~~ 278 (285)
T PRK00934 230 QGAKKVYVACVHPVLV---------------GDAILKLYN------AGVDEIIVTDTLES--------EVSK--ISVAPL 278 (285)
T ss_pred CCCCEEEEEEEeeccC---------------cHHHHHHHh------CCCCEEEEcCCCCC--------CceE--EEcHHH
Confidence 999999888743 32 122234444 48999999998742 1222 467899
Q ss_pred HHHHHh
Q 022268 243 LLNRLQ 248 (300)
Q Consensus 243 L~~~l~ 248 (300)
|+++|+
T Consensus 279 la~~i~ 284 (285)
T PRK00934 279 IADLLK 284 (285)
T ss_pred HHHHHh
Confidence 999885
No 24
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.73 E-value=0.069 Score=51.32 Aligned_cols=138 Identities=15% Similarity=0.109 Sum_probs=92.1
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCC-CceeeeEEeeeCC--CCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHh
Q 022268 86 KKVCLFYCPETHSLAERVAAQSDA-IELRSINWRKFKD--GFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYA 161 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~g-i~l~~i~~~rFpD--GE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidA 161 (300)
..++|-.-.+.-.+|+.+|+.| + .++.-+...|..+ |+ .....+..+|.|++|+||-.+.+- ..+. ..++.
T Consensus 149 ~~vvVspd~Ga~~~a~~la~~L-~~~~~~~i~k~R~~~~~~~-~~~~~~~~dv~gr~viIVDDIi~TG~Tl~---~aa~~ 223 (304)
T PRK03092 149 NVTVVSPDAGRVRVAEQWADRL-GGAPLAFIHKTRDPTVPNQ-VVANRVVGDVEGRTCVLVDDMIDTGGTIA---GAVRA 223 (304)
T ss_pred CcEEEEecCchHHHHHHHHHHc-CCCCEEEEEEEcccCCCCc-eEEEecCcCCCCCEEEEEccccCcHHHHH---HHHHH
Confidence 3344444567778999999999 6 7877777666533 33 345566778999999999888655 4444 45688
Q ss_pred cccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHH
Q 022268 162 LPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIP 241 (300)
Q Consensus 162 lrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~ 241 (300)
|++.||++|.++.-+- .++...+-++.+ +|+++|++.|-+..... .....+.. ++..+
T Consensus 224 Lk~~Ga~~I~~~~tH~-------------v~~~~a~~~l~~------~~~~~i~~t~tip~~~~-~~~~~~~~--~sva~ 281 (304)
T PRK03092 224 LKEAGAKDVIIAATHG-------------VLSGPAAERLKN------CGAREVVVTDTLPIPEE-KRFDKLTV--LSIAP 281 (304)
T ss_pred HHhcCCCeEEEEEEcc-------------cCChHHHHHHHH------CCCCEEEEeeeeccchh-hcCCCeEE--EEhHH
Confidence 8999999999988322 122223335555 48999999998632111 11113332 46789
Q ss_pred HHHHHHhcC
Q 022268 242 LLLNRLQQL 250 (300)
Q Consensus 242 lL~~~l~~~ 250 (300)
+|++.|+..
T Consensus 282 ~la~~i~~~ 290 (304)
T PRK03092 282 LLARAIREV 290 (304)
T ss_pred HHHHHHHHH
Confidence 999999764
No 25
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=96.58 E-value=0.098 Score=50.27 Aligned_cols=137 Identities=13% Similarity=0.112 Sum_probs=92.0
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcc
Q 022268 86 KKVCLFY-CPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALP 163 (300)
Q Consensus 86 ~~~~Ifs-gsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlr 163 (300)
.+++|++ -.+.-.+|+.+++.|.+.++.-+...|..++. .....+..++.|++|+|+-.+.+- ..+ ...+++++
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~-~~~~~~~~~v~g~~viivDDii~TG~Tl---~~a~~~l~ 226 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-AEVMNLIGDVKGKVAIMVDDMIDTAGTI---TKGAALLH 226 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcce-eeeEecCCCCCCCEEEEEcCcccchHHH---HHHHHHHH
Confidence 3555555 46677899999999944777777776655553 233456678999999999877644 443 44568889
Q ss_pred cCCCceEEEEe--ccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHH
Q 022268 164 KLFVSSFTLVL--PFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIP 241 (300)
Q Consensus 164 ragAk~ItlVI--PYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~ 241 (300)
+.|+++|.++. |-|+ ...+-++.+ +++++|++.|-+.......|+ .+.. ++..+
T Consensus 227 ~~Ga~~v~~~~tH~v~~---------------~~a~~~l~~------~~~~~iv~t~ti~~~~~~~~~-~~~~--~~v~~ 282 (302)
T PLN02369 227 QEGAREVYACATHAVFS---------------PPAIERLSS------GLFQEVIVTNTIPVSEKNYFP-QLTV--LSVAN 282 (302)
T ss_pred hCCCCEEEEEEEeeeeC---------------HHHHHHHHh------CCCCEEEEeCCCCChhhcccC-CceE--EEHHH
Confidence 99999999988 4442 122223333 479999999987532212233 3332 47789
Q ss_pred HHHHHHhcC
Q 022268 242 LLLNRLQQL 250 (300)
Q Consensus 242 lL~~~l~~~ 250 (300)
+|++.|+..
T Consensus 283 ~la~~i~~~ 291 (302)
T PLN02369 283 LLGETIWRV 291 (302)
T ss_pred HHHHHHHHH
Confidence 999999764
No 26
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.47 E-value=0.089 Score=51.06 Aligned_cols=136 Identities=10% Similarity=-0.025 Sum_probs=90.1
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcc
Q 022268 86 KKVCLFY-CPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALP 163 (300)
Q Consensus 86 ~~~~Ifs-gsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlr 163 (300)
.+++|++ -.+.-.+|+.+|+.| ++++.-+...+ .+.+ .....+..+|.|++|+||-.+.+- .. |...+++|+
T Consensus 169 ~~~vvV~pd~Ga~~~A~~la~~L-~~~~~~~~~~r-~~~~-~~~~~i~gdV~gk~viIVDDIidTG~T---l~~aa~~Lk 242 (323)
T PRK02458 169 SDVVVVSPKNSGIKRARSLAEYL-DAPIAIIDYAQ-DDSE-REEGYIIGDVAGKKAILIDDILNTGKT---FAEAAKIVE 242 (323)
T ss_pred CceEEEEECCChHHHHHHHHHHh-CCCEEEEEEec-CCCc-ceeeccccccCCCEEEEEcceeCcHHH---HHHHHHHHH
Confidence 4555555 566779999999999 78876555333 3322 122334568999999999888755 34 445678899
Q ss_pred cCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHH
Q 022268 164 KLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLL 243 (300)
Q Consensus 164 ragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL 243 (300)
+.||++|.++.-+.=+ +.....++.+ +|+++|++-|-+.... ...+ .+.. ++..++|
T Consensus 243 ~~GA~~V~~~~tHgif-------------~~~a~~~l~~------s~i~~iv~TdTi~~~~-~~~~-k~~~--isva~ll 299 (323)
T PRK02458 243 REGATEIYAVASHGLF-------------AGGAAEVLEN------APIKEILVTDSVATKE-RVPK-NVTY--LSASELI 299 (323)
T ss_pred hCCCCcEEEEEEChhc-------------CchHHHHHhh------CCCCEEEEECCcCCch-hcCC-CcEE--EEhHHHH
Confidence 9999999998876433 2222334444 4899999999885321 1112 2222 4668999
Q ss_pred HHHHhcC
Q 022268 244 LNRLQQL 250 (300)
Q Consensus 244 ~~~l~~~ 250 (300)
++.|++.
T Consensus 300 a~~i~~~ 306 (323)
T PRK02458 300 ADAIIRI 306 (323)
T ss_pred HHHHHHH
Confidence 9999764
No 27
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.28 E-value=0.17 Score=49.00 Aligned_cols=138 Identities=15% Similarity=0.095 Sum_probs=90.6
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHhCCCceeeeEEeeeCC--CCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHh
Q 022268 86 KKVCLFY-CPETHSLAERVAAQSDAIELRSINWRKFKD--GFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYA 161 (300)
Q Consensus 86 ~~~~Ifs-gsss~~LA~~IA~~L~gi~l~~i~~~rFpD--GE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidA 161 (300)
.+++|++ -.+.-..|+.+|+.| |+++.-+.-.+-.+ ++ .....+..+|.|++|+||-.+.+- .. |.-.+++
T Consensus 165 ~~~vvVsPd~G~~~~A~~lA~~l-g~~~~~~~k~r~~~~~~~-~~~~~~~gdv~Gr~viIVDDIidTG~T---l~~aa~~ 239 (320)
T PRK02269 165 DDVVVVSPDHGGVTRARKLAQFL-KTPIAIIDKRRSVDKMNT-SEVMNIIGNVKGKKCILIDDMIDTAGT---ICHAADA 239 (320)
T ss_pred CCcEEEEECccHHHHHHHHHHHh-CCCEEEEEecccCCCCce-eEEEEeccccCCCEEEEEeeecCcHHH---HHHHHHH
Confidence 3444444 566779999999999 78876544443322 21 223445578999999999888655 34 4456788
Q ss_pred cccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHH
Q 022268 162 LPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIP 241 (300)
Q Consensus 162 lrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~ 241 (300)
|++.||++|.++.-+-=+ +....-++.+ +|+++|++-|-+........+ .+.. ++..+
T Consensus 240 Lk~~GA~~V~~~~tHglf-------------~~~a~~~l~~------~~i~~iv~Tdti~~~~~~~~~-k~~~--isva~ 297 (320)
T PRK02269 240 LAEAGATEVYASCTHPVL-------------SGPALDNIQK------SAIEKLVVLDTIYLPEERLID-KIEQ--ISIAD 297 (320)
T ss_pred HHHCCCCEEEEEEECccc-------------CchHHHHHHh------CCCCEEEEeCCCCCccccccC-CeEE--EEhHH
Confidence 999999999998766333 2233334444 489999999987321111122 3332 47799
Q ss_pred HHHHHHhcC
Q 022268 242 LLLNRLQQL 250 (300)
Q Consensus 242 lL~~~l~~~ 250 (300)
+|++.|+..
T Consensus 298 ~la~~i~~~ 306 (320)
T PRK02269 298 LLGEAIIRI 306 (320)
T ss_pred HHHHHHHHH
Confidence 999999764
No 28
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.28 E-value=0.18 Score=49.24 Aligned_cols=137 Identities=13% Similarity=0.109 Sum_probs=92.0
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcc
Q 022268 86 KKVCLFY-CPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALP 163 (300)
Q Consensus 86 ~~~~Ifs-gsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlr 163 (300)
.+++|++ -.+.-.+|+.+|+.|++.+..-+.-.+-.+++ ...+.+..++.|++|+||-.+.+- ..+. -.+++|+
T Consensus 179 ~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~-~~~~~~~~~v~g~~viiVDDii~TG~T~~---~a~~~L~ 254 (330)
T PRK02812 179 EDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNV-AEVLNVIGDVKGKTAILVDDMIDTGGTIC---EGARLLR 254 (330)
T ss_pred CCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCce-eeeEeccccCCCCEEEEEccccCcHHHHH---HHHHHHh
Confidence 4566665 35567889999999943677777666655543 234455668999999999887654 3443 5568999
Q ss_pred cCCCceEEEEe--ccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHH
Q 022268 164 KLFVSSFTLVL--PFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIP 241 (300)
Q Consensus 164 ragAk~ItlVI--PYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~ 241 (300)
+.|+++|.++. |-|+ ...+-++.+ +++|+|++.|-+......-|+ .+.. ++..+
T Consensus 255 ~~Ga~~v~~~~tH~v~s---------------~~a~~~l~~------~~id~iv~tnti~~~~~~~~~-~~~~--~~va~ 310 (330)
T PRK02812 255 KEGAKQVYACATHAVFS---------------PPAIERLSS------GLFEEVIVTNTIPVPEERRFP-QLKV--LSVAN 310 (330)
T ss_pred ccCCCeEEEEEEcccCC---------------hHHHHHHhh------CCCCEEEEeCCCCChhhcccC-CceE--EEHHH
Confidence 99999999988 4443 223334443 489999999987532111133 2332 46789
Q ss_pred HHHHHHhcC
Q 022268 242 LLLNRLQQL 250 (300)
Q Consensus 242 lL~~~l~~~ 250 (300)
+|++.|+..
T Consensus 311 lla~~i~~~ 319 (330)
T PRK02812 311 MLGEAIWRI 319 (330)
T ss_pred HHHHHHHHH
Confidence 999999764
No 29
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.23 E-value=0.21 Score=48.10 Aligned_cols=139 Identities=17% Similarity=0.118 Sum_probs=91.6
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcc
Q 022268 86 KKVCLFY-CPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALP 163 (300)
Q Consensus 86 ~~~~Ifs-gsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlr 163 (300)
.+.+|++ ..+.-.+|+.+|+.| |+++.-++-.+..+++ .....+.+++.|++|+|+-.+.+- ..+. ..+++++
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~L-g~~~~~~~k~r~~~~~-~~~~~~~~~~~g~~vliVDDii~TG~T~~---~a~~~l~ 232 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRL-DADLAIIDKRRPRANV-SEVMNIIGDVEGRDCILVDDMIDTAGTLC---KAAEALK 232 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHh-CCCEEEEEeeccccee-EEEEeecccCCCCEEEEEecccCcHHHHH---HHHHHHH
Confidence 4444554 566889999999999 7888877766666663 223455568999999999888655 3433 5568889
Q ss_pred cCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHH
Q 022268 164 KLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLL 243 (300)
Q Consensus 164 ragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL 243 (300)
+.|+++|.++.-+-= ++....-++.+ +|+++|++-|-+...........+.. ++..++|
T Consensus 233 ~~Ga~~v~~~~tH~i-------------~~~~a~~~l~~------~~~~~iv~t~ti~~~~~~~~~~k~~~--isva~~i 291 (309)
T PRK01259 233 ERGAKSVYAYATHPV-------------LSGGAIERIEN------SVIDELVVTDSIPLSEEAKKCDKIRV--LSVAPLL 291 (309)
T ss_pred ccCCCEEEEEEEeee-------------CChHHHHHHhc------CCCCEEEEecCcccchhhccCCCeEE--EEcHHHH
Confidence 999999988875321 12222223333 48999999998743222111112322 4678999
Q ss_pred HHHHhcC
Q 022268 244 LNRLQQL 250 (300)
Q Consensus 244 ~~~l~~~ 250 (300)
++.|+..
T Consensus 292 a~~i~~~ 298 (309)
T PRK01259 292 AEAIRRI 298 (309)
T ss_pred HHHHHHH
Confidence 9999764
No 30
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.22 E-value=0.13 Score=52.02 Aligned_cols=140 Identities=10% Similarity=-0.004 Sum_probs=93.0
Q ss_pred CcEEEEeCC-CCHHHHHHHHHHhCC-----CceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHH
Q 022268 86 KKVCLFYCP-ETHSLAERVAAQSDA-----IELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSV 158 (300)
Q Consensus 86 ~~~~Ifsgs-ss~~LA~~IA~~L~g-----i~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLll 158 (300)
.+.+|++-. +...-|+.+|+.|+. .++.-+.-.|..++| ...+.+..+|.|++|+||..+.+- ..+. -.
T Consensus 279 ~~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~-v~~~~lvgdV~Gk~vIIVDDIIdTG~Tl~---~a 354 (439)
T PTZ00145 279 YKPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNE-IEKMDLVGNVYDSDVIIVDDMIDTSGTLC---EA 354 (439)
T ss_pred CccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCc-eEEEeccCCCCCCEEEEEcceeCcHHHHH---HH
Confidence 445566543 356789999999931 456666666766675 234556679999999999888765 4444 46
Q ss_pred HHhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcc
Q 022268 159 IYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFES 238 (300)
Q Consensus 159 idAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~ 238 (300)
+.+|++.||++|.++.-+- .++...+.++.+ +|+++|++-|-+.....-.....+.. ++
T Consensus 355 a~~Lk~~GA~~V~~~~THg-------------lfs~~A~~rl~~------s~i~~IvvTdTIp~~~~~~~~~k~~v--is 413 (439)
T PTZ00145 355 AKQLKKHGARRVFAFATHG-------------LFSGPAIERIEA------SPLEEVVVTDTVKSNKNIDSCKKITK--LS 413 (439)
T ss_pred HHHHHHcCCCEEEEEEEcc-------------cCChhHHHHHhc------CCCCEEEEeCCCcCchhhcccCCeEE--EE
Confidence 7788999999999987543 334444456644 58999999998632111011112332 46
Q ss_pred cHHHHHHHHhcC
Q 022268 239 AIPLLLNRLQQL 250 (300)
Q Consensus 239 a~~lL~~~l~~~ 250 (300)
..++|++.|+..
T Consensus 414 VA~llAeaI~~i 425 (439)
T PTZ00145 414 VSVLVADAIRRI 425 (439)
T ss_pred hHHHHHHHHHHH
Confidence 789999999764
No 31
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=95.76 E-value=0.3 Score=47.61 Aligned_cols=142 Identities=10% Similarity=-0.025 Sum_probs=93.6
Q ss_pred CcEEEEeC-CCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcc
Q 022268 86 KKVCLFYC-PETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALP 163 (300)
Q Consensus 86 ~~~~Ifsg-sss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlr 163 (300)
.+++|++- .+.-..|+.+|+.| |.++.-++-.+...++ .-.+.+..++.|++|+||..+.+- ..+. ..+++++
T Consensus 168 ~~~vvVsPD~gg~~rA~~lA~~l-g~~~~vi~K~r~~~~~-~~~~~~~gdv~Gk~VIIVDDIi~TG~Tl~---~aa~~Lk 242 (332)
T PRK00553 168 KDLVVVSPDYGGVKRARLIAESL-ELPLAIIDKRRPKHNV-AESINVLGEVKNKNCLIVDDMIDTGGTVI---AAAKLLK 242 (332)
T ss_pred CCeEEEEECCCcHHHHHHHHHHh-CCCEEEEEEecCCcce-EeeEEeeccCCCCEEEEEeccccchHHHH---HHHHHHH
Confidence 45566654 44678999999999 7888877777665554 223444568999999999888755 4444 4557899
Q ss_pred cCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHH
Q 022268 164 KLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLL 243 (300)
Q Consensus 164 ragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL 243 (300)
+.||++|.++.-.-= ++....-++.+++ ...|+++|++-|-+..... .....+.. ++..++|
T Consensus 243 ~~GA~~V~~~atHgl-------------f~~~a~~~l~~~~--~~~~i~~iv~Tntip~~~~-~~~~~~~~--vsva~~l 304 (332)
T PRK00553 243 KQKAKKVCVMATHGL-------------FNKNAIQLFDEAF--KKKLIDKLFVSNSIPQTKF-EKKPQFKV--VDLAHLY 304 (332)
T ss_pred HcCCcEEEEEEEeee-------------cCchHHHHHHhcc--ccCCCCEEEEeCCccCccc-ccCCCeEE--EEhHHHH
Confidence 999999998876532 3333334453310 1248999999998742211 11112332 4678999
Q ss_pred HHHHhcC
Q 022268 244 LNRLQQL 250 (300)
Q Consensus 244 ~~~l~~~ 250 (300)
++.|+..
T Consensus 305 a~~i~~~ 311 (332)
T PRK00553 305 EEVLLCY 311 (332)
T ss_pred HHHHHHH
Confidence 9999764
No 32
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=95.03 E-value=0.9 Score=45.33 Aligned_cols=140 Identities=9% Similarity=-0.001 Sum_probs=88.3
Q ss_pred cEEEEe-CCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCe-----eEEeecCC-CCCCCeEEEEeecCCc-hhHHHHHHH
Q 022268 87 KVCLFY-CPETHSLAERVAAQSDAIELRSINWRKFKDGFP-----NLFIPNAH-GIRGQHVAFLASFSSP-GKIFEQLSV 158 (300)
Q Consensus 87 ~~~Ifs-gsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~-----Ei~V~i~e-sVrG~dV~IIqS~~~p-d~lmELLll 158 (300)
+.+|++ -.+....|+.+|+.| |.++.-+.-.|..+++. .+...+.. +|.|++|+||-.+.+- .. |.-.
T Consensus 208 ~~VVVsPD~Gg~~rA~~~A~~L-g~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~T---l~~a 283 (382)
T PRK06827 208 HLMVISPDTGAMDRAKYYASVL-GVDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGS---MIDA 283 (382)
T ss_pred CcEEEEECccchHHHHHHHHHh-CCCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHH---HHHH
Confidence 444544 455678999999999 78887666555432211 12333334 8999999999887654 34 4567
Q ss_pred HHhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCCh--hhhhcccCCCcccCC
Q 022268 159 IYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHA--LQERFYFGDTILPCF 236 (300)
Q Consensus 159 idAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs--~qi~~fF~~~v~~l~ 236 (300)
++.|++.||++|.++...--++ ..+-++.++.+ ..++++|++=|-+- ..... ...+..
T Consensus 284 a~~Lk~~GA~~V~~~~tH~vf~--------------~a~~~l~~~~~--~g~i~~iv~TdTi~~~~~~~~--~~~~~~-- 343 (382)
T PRK06827 284 AKELKSRGAKKIIVAATFGFFT--------------NGLEKFDKAYE--EGYFDRIIGTNLVYHPEELLS--KPWYIE-- 343 (382)
T ss_pred HHHHHHcCCCEEEEEEEeecCh--------------HHHHHHHhhcc--cCCCCEEEEeCCCcCchhhcc--cCCeEE--
Confidence 7888999999998877663332 22234444221 23599999999642 22111 112222
Q ss_pred cccHHHHHHHHhcC
Q 022268 237 ESAIPLLLNRLQQL 250 (300)
Q Consensus 237 L~a~~lL~~~l~~~ 250 (300)
++..++|++.|+..
T Consensus 344 isva~llA~~I~~~ 357 (382)
T PRK06827 344 VDMSKLIARIIDAL 357 (382)
T ss_pred EEcHHHHHHHHHHH
Confidence 46789999999764
No 33
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=93.27 E-value=0.67 Score=45.16 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=90.7
Q ss_pred cEEEEeC-CCCHHHHHHHHHHhCCCceeeeEEeee-CCCCeeEEee-cCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhc
Q 022268 87 KVCLFYC-PETHSLAERVAAQSDAIELRSINWRKF-KDGFPNLFIP-NAHGIRGQHVAFLASFSSP-GKIFEQLSVIYAL 162 (300)
Q Consensus 87 ~~~Ifsg-sss~~LA~~IA~~L~gi~l~~i~~~rF-pDGE~Ei~V~-i~esVrG~dV~IIqS~~~p-d~lmELLllidAl 162 (300)
+++|++- .+.-.-|+.+|+.| |.++.-++-+|- .+. +..+. +..+|+||+++||..+-+- .. +...+++|
T Consensus 164 d~vVVSPD~Ggv~RAr~~A~~L-~~~~a~i~K~R~~~~~--~v~~~~~~gdV~gk~~iiVDDiIdTgGT---i~~Aa~~L 237 (314)
T COG0462 164 DPVVVSPDKGGVKRARALADRL-GAPLAIIDKRRDSSPN--VVEVMNLIGDVEGKDVVIVDDIIDTGGT---IAKAAKAL 237 (314)
T ss_pred CcEEECCCccHHHHHHHHHHHh-CCCEEEEEEeecCCCC--eEEEeecccccCCCEEEEEeccccccHH---HHHHHHHH
Confidence 4556653 44668899999999 788888888776 455 34333 3468999999999776432 33 45578889
Q ss_pred ccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHH
Q 022268 163 PKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPL 242 (300)
Q Consensus 163 rragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~l 242 (300)
++.||++|.++.-+==++ ....+.|++ ..+++||+-|-=-......++ .+. .++..++
T Consensus 238 k~~GAk~V~a~~tH~vfs--------------~~a~~~l~~-----~~i~~vivTnTi~~~~~~~~~-~~~--~isva~l 295 (314)
T COG0462 238 KERGAKKVYAAATHGVFS--------------GAALERLEA-----SAIDEVIVTDTIPLPEKKKIP-KVS--VISVAPL 295 (314)
T ss_pred HHCCCCeEEEEEEchhhC--------------hHHHHHHhc-----CCCCEEEEeCCcccccccccC-ceE--EEEhHHH
Confidence 999999999876543222 223466763 258999998843211111122 333 2577999
Q ss_pred HHHHHhcC
Q 022268 243 LLNRLQQL 250 (300)
Q Consensus 243 L~~~l~~~ 250 (300)
+++.|...
T Consensus 296 iaeaI~ri 303 (314)
T COG0462 296 IAEAIRRI 303 (314)
T ss_pred HHHHHHHH
Confidence 99999875
No 34
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=92.80 E-value=2.2 Score=37.96 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=58.1
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCc--eeeeEEeeeCCCCe---eEEee--cCCCCCCCeEEEEeecCCc-hhHHHHHH
Q 022268 86 KKVCLFYCPETHSLAERVAAQSDAIE--LRSINWRKFKDGFP---NLFIP--NAHGIRGQHVAFLASFSSP-GKIFEQLS 157 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~gi~--l~~i~~~rFpDGE~---Ei~V~--i~esVrG~dV~IIqS~~~p-d~lmELLl 157 (300)
..++|=-.++.-.+|..+++.| +++ +.-+....|-||.. ++.+. +..+++|++|+||-.+-+- ..+. .
T Consensus 35 ~~vvvgI~~Gg~~fa~~L~~~L-~~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~---~ 110 (178)
T PRK15423 35 DMVLVGLLRGSFMFMADLCREV-QVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLS---K 110 (178)
T ss_pred CeEEEEEecCChHHHHHHHHHh-CCCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEEEEEeeecCchHHHH---H
Confidence 3444444788889999999999 675 55778888864321 34444 3458999999999998765 4444 3
Q ss_pred HHHhcccCCCceE-EEEe
Q 022268 158 VIYALPKLFVSSF-TLVL 174 (300)
Q Consensus 158 lidAlrragAk~I-tlVI 174 (300)
+.+.++..|++++ ++++
T Consensus 111 l~~~l~~~~~~~v~~avL 128 (178)
T PRK15423 111 VREILSLREPKSLAICTL 128 (178)
T ss_pred HHHHHHhCCCCEEEEEEE
Confidence 4445667778877 4443
No 35
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=92.03 E-value=2.4 Score=37.57 Aligned_cols=84 Identities=6% Similarity=0.085 Sum_probs=56.7
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCce--eeeEEeeeCCCCe--eEEee--cCCCCCCCeEEEEeecCCc-hhHHHHHHHH
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIEL--RSINWRKFKDGFP--NLFIP--NAHGIRGQHVAFLASFSSP-GKIFEQLSVI 159 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l--~~i~~~rFpDGE~--Ei~V~--i~esVrG~dV~IIqS~~~p-d~lmELLlli 159 (300)
.++|-..+..-.+|..+|+.| ++++ .-+...++.+++. ++.+. ...+++|++|+||-.+.+. ..+.+ ++
T Consensus 42 ~viV~i~~gg~~~A~~La~~l-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidTG~Tl~~---~~ 117 (181)
T PRK09162 42 PLVLCVMGGGLVFTGQLLPRL-DFPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVVDDILDEGHTLAA---IR 117 (181)
T ss_pred eEEEEECCCcHHHHHHHHHHc-CCCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEEEccccCcHHHHHH---HH
Confidence 444444677889999999999 6764 3455566655421 22222 2357999999999887665 34443 45
Q ss_pred HhcccCCCceEEEEe
Q 022268 160 YALPKLFVSSFTLVL 174 (300)
Q Consensus 160 dAlrragAk~ItlVI 174 (300)
+.|++.||++|.+..
T Consensus 118 ~~Lk~~Ga~~V~~av 132 (181)
T PRK09162 118 DRCLEMGAAEVYSAV 132 (181)
T ss_pred HHHHhCCCCEEEEEE
Confidence 567888999987765
No 36
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=90.09 E-value=7.7 Score=38.00 Aligned_cols=138 Identities=11% Similarity=0.056 Sum_probs=81.0
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhccc
Q 022268 86 KKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPK 164 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrr 164 (300)
.+++|++-... . ++++++.+.+.++.-++-.+ +|+......+..+++|++|+||-.+.+- ..+ ..+++.|++
T Consensus 183 ~~~vvVsPD~G-a-~~ra~~~a~~~~~~~~~K~R--~g~~~~~~~~~~dv~gr~vlIVDDIidTG~Tl---~~aa~~L~~ 255 (326)
T PLN02297 183 DNIVIAFPDDG-A-WKRFHKQFEHFPMVVCTKVR--EGDKRIVRIKEGNPAGRHVVIVDDLVQSGGTL---IECQKVLAA 255 (326)
T ss_pred CCcEEEecCcc-H-HHHHHHHcCCCCEEEEEeEE--CCCceEEEecccccCCCeEEEEecccCcHHHH---HHHHHHHHH
Confidence 45555543322 1 34444444356666555444 4543444556678999999999888654 344 345588889
Q ss_pred CCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhc--CCCCCCCCCEEEEecCChhh--hhcccCCCcccCCcccH
Q 022268 165 LFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSN--IPTSRGGPTSLVTFDIHALQ--ERFYFGDTILPCFESAI 240 (300)
Q Consensus 165 agAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~s--lp~~~aG~drVItvDlHs~q--i~~fF~~~v~~l~L~a~ 240 (300)
.|+++|.++.-+-=+ +...+-++.++ +| .+|+++|++=|-+... ...-.+ .+.. ++..
T Consensus 256 ~Ga~~V~~~~THglf-------------s~~a~~~l~~~~~~~--~~~i~~iv~TdTip~~~~~~~~~~-k~~~--isva 317 (326)
T PLN02297 256 HGAAKVSAYVTHGVF-------------PNESWERFTHDNGGP--EAGFAYFWITDSCPQTVKAVRGKA-PFEV--LSLA 317 (326)
T ss_pred CCCcEEEEEEECccc-------------ChhHHHHHHhccccc--ccCcCEEEEcCCccCChhhcccCC-CcEE--EEcH
Confidence 999999998766333 33344455541 11 2489999999987321 100111 2222 3668
Q ss_pred HHHHHHHh
Q 022268 241 PLLLNRLQ 248 (300)
Q Consensus 241 ~lL~~~l~ 248 (300)
++|++.|+
T Consensus 318 ~llAe~i~ 325 (326)
T PLN02297 318 GSIADALQ 325 (326)
T ss_pred HHHHHHhc
Confidence 89988874
No 37
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=89.46 E-value=4.9 Score=36.34 Aligned_cols=87 Identities=11% Similarity=0.100 Sum_probs=60.6
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHhCCCceeeeEEeeeCC-CC-eeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHh
Q 022268 86 KKVCLFY-CPETHSLAERVAAQSDAIELRSINWRKFKD-GF-PNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYA 161 (300)
Q Consensus 86 ~~~~Ifs-gsss~~LA~~IA~~L~gi~l~~i~~~rFpD-GE-~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidA 161 (300)
+++++++ .++.-.+++.+++.|..++++.+...+... ++ .+.+.+++.++.|++|+|+-.+-.- ..++ .+++.
T Consensus 70 ~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~---~ai~~ 146 (209)
T PRK00129 70 KKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAI---AAIDL 146 (209)
T ss_pred CeEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHH---HHHHH
Confidence 3466655 688999999999999546777777666422 11 1246778889999999999776543 3333 34556
Q ss_pred cccCCCceEEEEec
Q 022268 162 LPKLFVSSFTLVLP 175 (300)
Q Consensus 162 lrragAk~ItlVIP 175 (300)
|++.|+++|.++.-
T Consensus 147 L~~~G~~~I~~~~l 160 (209)
T PRK00129 147 LKKRGAKNIKVLCL 160 (209)
T ss_pred HHHcCCCEEEEEEE
Confidence 67778999877764
No 38
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=88.24 E-value=9.3 Score=33.37 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=56.2
Q ss_pred cEEEEe-CCCCHHHHHHHHHHhCCCc--eeeeEEeeeCCCC-----eeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHH
Q 022268 87 KVCLFY-CPETHSLAERVAAQSDAIE--LRSINWRKFKDGF-----PNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLS 157 (300)
Q Consensus 87 ~~~Ifs-gsss~~LA~~IA~~L~gi~--l~~i~~~rFpDGE-----~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLl 157 (300)
+.+|++ ..+.-.+|..+++.| +++ +..+....|-|++ .+....+..++.|++|+||-.+.+- ..+.+..
T Consensus 27 ~~vvv~i~~GG~~~a~~l~~~L-~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii~TG~Tl~~~~- 104 (166)
T TIGR01203 27 PLVLLCVLKGSFPFFADLIRYI-AVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVDTGLTLQYLL- 104 (166)
T ss_pred CeEEEEEccCCHHHHHHHHHhc-CCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeeeCcHHHHHHHH-
Confidence 344444 678889999999999 654 5566666665442 1222335568999999999888655 4555544
Q ss_pred HHHhcccCCCceEEEEe
Q 022268 158 VIYALPKLFVSSFTLVL 174 (300)
Q Consensus 158 lidAlrragAk~ItlVI 174 (300)
++|+..|+++|.++.
T Consensus 105 --~~l~~~g~~~i~~~~ 119 (166)
T TIGR01203 105 --DLLKARKPKSLKIVT 119 (166)
T ss_pred --HHHHHCCCCEEEEEE
Confidence 455667888876655
No 39
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=88.16 E-value=1.3 Score=40.12 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=60.8
Q ss_pred eecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCC
Q 022268 129 IPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTS 207 (300)
Q Consensus 129 V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~ 207 (300)
+.+-.+|.|++++||-.+.+- ..+ .-.++.||+.||++|.++.-+-=.+ |+ .. +.|+.
T Consensus 75 ~~vVGDV~gk~~IIvDDiIdtg~Tl---~~aA~~Lk~~GA~~V~~~aTHgvfs--------~~-----A~-~~l~~---- 133 (184)
T PF14572_consen 75 MNVVGDVKGKICIIVDDIIDTGGTL---IKAAELLKERGAKKVYACATHGVFS--------GD-----AP-ERLEE---- 133 (184)
T ss_dssp EEEES--TTSEEEEEEEEESSTHHH---HHHHHHHHHTTESEEEEEEEEE-----------TT-----HH-HHHHH----
T ss_pred eEEEEEccCCeEeeecccccchHHH---HHHHHHHHHcCCCEEEEEEeCcccC--------ch-----HH-HHHhh----
Confidence 444579999999999888644 444 4567789999999999988774432 22 22 44553
Q ss_pred CCCCCEEEEecCChhhhhcccCCCcccCCcccHHHHHHHHhc
Q 022268 208 RGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQ 249 (300)
Q Consensus 208 ~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~~~l~~ 249 (300)
..+|+|++-|-.-...+..-...+.. ++-.++|++.|+.
T Consensus 134 -s~Id~vvvTnTIp~~~~~~~~~Ki~v--ldis~llaeaI~r 172 (184)
T PF14572_consen 134 -SPIDEVVVTNTIPQEEQKLQCPKIKV--LDISPLLAEAIRR 172 (184)
T ss_dssp -SSESEEEEETTS--HHHHHH-TTEEE--E--HHHHHHHHHH
T ss_pred -cCCeEEEEeccccCchhhhcCCCEeE--eehHHHHHHHHHH
Confidence 37899999997644332222234444 4679999999975
No 40
>PLN02501 digalactosyldiacylglycerol synthase
Probab=87.92 E-value=6.6 Score=42.64 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=99.3
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecC-CCCC--CCeEEEEeecCCc----hhHHHHHHHH
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNA-HGIR--GQHVAFLASFSSP----GKIFEQLSVI 159 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~-esVr--G~dV~IIqS~~~p----d~lmELLlli 159 (300)
++.+-.+++..+|--+||..|. - .-.++.+| .+-.-. .+++ +++|.|+-+..-| -.+.-|+..+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~---~~~~~~~~~~~~~~r~~~ivTtAslPWmTGtavnpL~rAa 348 (794)
T PLN02501 278 SSLLESDNHNDELDLRIASVLQ-S-----TGHCYDGG---FWTDSSKHELSDGKRHVAIVTTASLPWMTGTAVNPLFRAA 348 (794)
T ss_pred ccccccccccccchhhhhhhhh-c-----cCccccCC---cccCccccccccCCCeEEEEEcccCcccccccccHHHHHH
Confidence 3444456667789999998873 1 12344444 221111 1222 5899999776666 4677788877
Q ss_pred HhcccCCCceEEEEeccCCCccccccCCCCC--ccc-----HHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCc
Q 022268 160 YALPKLFVSSFTLVLPFFPTGTSERMEDEGD--VAT-----AFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTI 232 (300)
Q Consensus 160 dAlrragAk~ItlVIPYf~YARQDR~~~~Ge--~is-----ak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v 232 (300)
+-++. |-.+||+|||+++-+-|... -+. .+. -..+-+-|+. .+|+..-.-+... .|-|....
T Consensus 349 yLa~~-~~~~VtlviPWl~~~dq~~v--y~~~~~F~~p~eQe~~ir~wl~~----r~g~~~~~~i~fY----pg~~~~~~ 417 (794)
T PLN02501 349 YLAKS-AKQNVTLLVPWLCKSDQELV--YPNNLTFSSPEEQESYIRNWLEE----RIGFKADFKISFY----PGKFSKER 417 (794)
T ss_pred Hhccc-CCceEEEEEecCCccccccc--cCCCcccCCHHHHHHHHHHHHHH----hcCCCCCceEEee----cchhccCC
Confidence 77775 55899999999996644443 332 222 2345556632 4576632222111 22233222
Q ss_pred ccCCcccHHHHHHHHhcCCCCCCeEEEeCCcccHHH-HHHHHhhCCCccc
Q 022268 233 LPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKR-FHKQLQHFPMVLR 281 (300)
Q Consensus 233 ~~l~L~a~~lL~~~l~~~~~~~n~vIVSPD~GA~kR-A~~~A~~l~~vv~ 281 (300)
.. +.+...+.++|.+. +.+-+.+..|..=++.. +..+|++++-+|+
T Consensus 418 ~S--I~p~gdI~~~L~~f-~PDVVHLatP~~LGw~~~Glr~ArKl~PVVa 464 (794)
T PLN02501 418 RS--IIPAGDTSQFIPSK-DADIAILEEPEHLNWYHHGKRWTDKFNHVVG 464 (794)
T ss_pred cc--ccchHHHHHHhhcc-CCCEEEECCchhhccHHHHHHHHHHcCCeEE
Confidence 21 24567788888764 45667777888766653 6677777764444
No 41
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=86.85 E-value=9.4 Score=35.10 Aligned_cols=86 Identities=10% Similarity=0.134 Sum_probs=55.5
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHhC----CCceeeeEEeeeCCCCe---eEEe--ecCCCCCCCeEEEEeecCCc-hhHHH
Q 022268 86 KKVCLFY-CPETHSLAERVAAQSD----AIELRSINWRKFKDGFP---NLFI--PNAHGIRGQHVAFLASFSSP-GKIFE 154 (300)
Q Consensus 86 ~~~~Ifs-gsss~~LA~~IA~~L~----gi~l~~i~~~rFpDGE~---Ei~V--~i~esVrG~dV~IIqS~~~p-d~lmE 154 (300)
+++.|++ .++.-.+|..++..|+ .+++..+.+..|-||.. ++.+ .+..+++|++|+||-.+-+- ..+..
T Consensus 57 ~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~ 136 (211)
T PTZ00271 57 NPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQY 136 (211)
T ss_pred CCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHH
Confidence 3444444 7888899999999983 13467788888866421 2333 44568999999999887655 34444
Q ss_pred HHHHHHhcccCCCceE-EEEe
Q 022268 155 QLSVIYALPKLFVSSF-TLVL 174 (300)
Q Consensus 155 LLllidAlrragAk~I-tlVI 174 (300)
++ +.|++.++++| ++++
T Consensus 137 v~---~~l~~~~p~svk~avL 154 (211)
T PTZ00271 137 LM---RFMLAKKPASLKTVVL 154 (211)
T ss_pred HH---HHHHhcCCCEEEEEEE
Confidence 33 44444567776 4443
No 42
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=86.15 E-value=9.8 Score=34.42 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=61.2
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHhCCCceeeeEEeeeCC-CC-eeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHh
Q 022268 86 KKVCLFY-CPETHSLAERVAAQSDAIELRSINWRKFKD-GF-PNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYA 161 (300)
Q Consensus 86 ~~~~Ifs-gsss~~LA~~IA~~L~gi~l~~i~~~rFpD-GE-~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidA 161 (300)
+++++++ .++.-.+++.+.+.|..++++.+...+... ++ ...+.++++++.|++|+|+-.+-.- ..+ ..+++.
T Consensus 68 ~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl---~~ai~~ 144 (207)
T TIGR01091 68 KKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTM---IAALDL 144 (207)
T ss_pred CcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHH---HHHHHH
Confidence 3466665 688899999999999546777666655322 22 1347788889999999999776543 333 345566
Q ss_pred cccCCCceEEEEec
Q 022268 162 LPKLFVSSFTLVLP 175 (300)
Q Consensus 162 lrragAk~ItlVIP 175 (300)
|++.|+++|.++..
T Consensus 145 L~~~G~~~I~v~~l 158 (207)
T TIGR01091 145 LKKRGAKKIKVLSI 158 (207)
T ss_pred HHHcCCCEEEEEEE
Confidence 77789999888766
No 43
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=85.83 E-value=15 Score=32.96 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=55.6
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCC---c--eeeeEEeeeCCCC---eeEEee---cCCCCCCCeEEEEeecCCc-hhHHH
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAI---E--LRSINWRKFKDGF---PNLFIP---NAHGIRGQHVAFLASFSSP-GKIFE 154 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi---~--l~~i~~~rFpDGE---~Ei~V~---i~esVrG~dV~IIqS~~~p-d~lmE 154 (300)
.++|=-.++.-.+|..++..| +. + +.-+...++.+|. .++.+. +..+++|++|+||-.+.+- ..+.+
T Consensus 37 ~vivgi~~Gg~~fa~~L~~~L-~~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~ 115 (189)
T PLN02238 37 PVVLGVATGAFMFLADLVRAI-QPLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSA 115 (189)
T ss_pred cEEEEEccCCHHHHHHHHHHh-CccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCEEEEEecccchHHHHHH
Confidence 343333677878999999999 66 3 3456667776531 134443 3457999999999887654 33333
Q ss_pred HHHHHHhcccCCCceEEEEe
Q 022268 155 QLSVIYALPKLFVSSFTLVL 174 (300)
Q Consensus 155 LLllidAlrragAk~ItlVI 174 (300)
+++.+++.|+++|.++.
T Consensus 116 ---~~~~l~~~g~~~v~~av 132 (189)
T PLN02238 116 ---LVAHLEAKGAASVSVCA 132 (189)
T ss_pred ---HHHHHHhCCCCEEEEEE
Confidence 34667888999886664
No 44
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=85.11 E-value=0.92 Score=40.24 Aligned_cols=46 Identities=17% Similarity=0.015 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCCccccccccccCCceeeeeec
Q 022268 240 IPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMVLRMPYVDLYCVHHAPAYKN 298 (300)
Q Consensus 240 ~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~vv~~~~~~~lg~~~a~~~k~ 298 (300)
...+++++.+... ++.+|++|+.|+..+|..+|. .||++..+++|+
T Consensus 45 ~~~i~~~l~~~i~-~~d~ivg~~~ggi~lA~~lA~------------~l~~p~~~~rk~ 90 (176)
T PRK13812 45 LRLIAEAFADRID-EDTKLAGVALGAVPLVAVTSV------------ETGVPYVIARKQ 90 (176)
T ss_pred HHHHHHHHHHHhc-cCCEEEEeecchHHHHHHHHH------------HHCCCEEEEecc
Confidence 5667777755422 337999999999999999994 455555555553
No 45
>PLN02440 amidophosphoribosyltransferase
Probab=82.14 E-value=14 Score=37.93 Aligned_cols=121 Identities=11% Similarity=0.094 Sum_probs=74.6
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCceee-eEEeeeC------------CCCeeEEeecC---CCCCCCeEEEEeecCCc
Q 022268 86 KKVCLFYCPETHSLAERVAAQSDAIELRS-INWRKFK------------DGFPNLFIPNA---HGIRGQHVAFLASFSSP 149 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~gi~l~~-i~~~rFp------------DGE~Ei~V~i~---esVrG~dV~IIqS~~~p 149 (300)
.+++|-.-.+...+|..+++.+ |+++.. +...++. ++ .++.++. ..+.|++|+||-....-
T Consensus 276 ~d~vvpVP~s~~~~A~~la~~l-giP~~~~lvr~ry~~rt~i~~~q~~r~~--~~~~k~~~~~~~v~gk~VlLVDDiitt 352 (479)
T PLN02440 276 CDVVIPVPDSGRVAALGYAAKL-GVPFQQGLIRSHYVGRTFIEPSQKIRDF--SVKLKLNPVRSVLEGKRVVVVDDSIVR 352 (479)
T ss_pred CCEEEEeCCcHHHHHHHHHHHh-CCCchhheEEEeeccccccCcchhhhhh--hheeeeecccccccCceEEEEeceeCc
Confidence 4555544556678999999999 787652 2223433 12 1333332 45899999999776543
Q ss_pred -hhHHHHHHHHHhcccCCCceEEEEec--------cCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCC
Q 022268 150 -GKIFEQLSVIYALPKLFVSSFTLVLP--------FFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIH 220 (300)
Q Consensus 150 -d~lmELLllidAlrragAk~ItlVIP--------Yf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlH 220 (300)
..+-+ +++.|+++||++|.+++- |++..-.||.+.-|--.+...+++.|. +|.+.-+-+.
T Consensus 353 GtTl~~---i~~~L~~aGa~~V~v~v~~p~~~~p~~~G~d~p~~~~li~~~~~~~ei~~~~~--------~dsl~~l~~~ 421 (479)
T PLN02440 353 GTTSSK---IVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSVEEIRKFIG--------CDSLAFLPLE 421 (479)
T ss_pred HHHHHH---HHHHHHhcCCCEEEEEEECCcccccceeeccCCCHHHHhhcCCCHHHHHHHhC--------CCEEEEecHH
Confidence 33434 567788999998876654 445555555544444455656666554 6777766544
No 46
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=81.63 E-value=6.3 Score=40.58 Aligned_cols=122 Identities=13% Similarity=0.136 Sum_probs=74.2
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEE------eee--CCC-Cee--EEee---cCCCCCCCeEEEEeecCCc-hh
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINW------RKF--KDG-FPN--LFIP---NAHGIRGQHVAFLASFSSP-GK 151 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~------~rF--pDG-E~E--i~V~---i~esVrG~dV~IIqS~~~p-d~ 151 (300)
+++|---++...+|..+|+.+ |+++..--+ ++| +.. +++ ++.. +...++|++|+||...-.- ..
T Consensus 287 D~VvpVPnqa~~lA~~la~~l-gip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~gk~vllVDDvittG~T 365 (484)
T PRK07272 287 DIVIGVPNSSLSAASGYAEES-GLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRGTT 365 (484)
T ss_pred CEEEEecHHHHHHHHHHHHHH-CCCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccCCCEEEEEccccCchHH
Confidence 555443455668999999999 788642111 234 221 011 2222 2456889999999665433 34
Q ss_pred HHHHHHHHHhcccCCCceEEEEec--------cCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCC
Q 022268 152 IFEQLSVIYALPKLFVSSFTLVLP--------FFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIH 220 (300)
Q Consensus 152 lmELLllidAlrragAk~ItlVIP--------Yf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlH 220 (300)
+- -++.+|+++||+.|.+.+- ||+..+++|...-..--+...+++.| |+|.+..+.+.
T Consensus 366 ~~---~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~~~~--------~~dsl~~~~~~ 431 (484)
T PRK07272 366 SR---RIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEICDII--------GADSLTYLSVD 431 (484)
T ss_pred HH---HHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHHHHh--------CCCEEEEecHH
Confidence 43 4667888999999999998 88888887753222223444555544 46666666543
No 47
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=78.67 E-value=21 Score=31.11 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=47.7
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEee-eC-----------CCCeeEEeecCCCCCCCeEEEEeecCCc-hhHH
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRK-FK-----------DGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIF 153 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~r-Fp-----------DGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lm 153 (300)
+.++=...+.-.+|..+|..| ++++.-+.-.+ ++ .|+..+++.-...++|++|+||-.+.+- ..+
T Consensus 53 d~Ivgv~~~Gi~~a~~la~~l-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl- 130 (175)
T PRK02304 53 DKIVGIEARGFIFGAALAYKL-GIGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTL- 130 (175)
T ss_pred CEEEEEccchHHHHHHHHHHh-CCCEEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHH-
Confidence 343333456678999999999 78875432211 11 1322333332234789999999887654 343
Q ss_pred HHHHHHHhcccCCCceE
Q 022268 154 EQLSVIYALPKLFVSSF 170 (300)
Q Consensus 154 ELLllidAlrragAk~I 170 (300)
.-+++.++++|++.+
T Consensus 131 --~~~~~~l~~~Ga~~v 145 (175)
T PRK02304 131 --EAAIKLLERLGAEVV 145 (175)
T ss_pred --HHHHHHHHHcCCEEE
Confidence 344555678888654
No 48
>PLN02293 adenine phosphoribosyltransferase
Probab=78.59 E-value=3.7 Score=36.87 Aligned_cols=35 Identities=11% Similarity=-0.025 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCC
Q 022268 240 IPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFP 277 (300)
Q Consensus 240 ~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~ 277 (300)
.+.+++++++ .+..+|++|+.|+.-.|..+|..++
T Consensus 51 ~~~l~~~~~~---~~~d~Ivg~e~~Gi~lA~~lA~~Lg 85 (187)
T PLN02293 51 IDLFVERYRD---MGISVVAGIEARGFIFGPPIALAIG 85 (187)
T ss_pred HHHHHHHHhh---cCCCEEEEeCCCchHHHHHHHHHHC
Confidence 3445555543 2456899999999999999996554
No 49
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=78.45 E-value=12 Score=37.89 Aligned_cols=121 Identities=11% Similarity=0.029 Sum_probs=70.8
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCceeeeEE-eeeC-----CCCe-------eEEeec-CCCCCCCeEEEEeecCCc-h
Q 022268 86 KKVCLFYCPETHSLAERVAAQSDAIELRSINW-RKFK-----DGFP-------NLFIPN-AHGIRGQHVAFLASFSSP-G 150 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~-~rFp-----DGE~-------Ei~V~i-~esVrG~dV~IIqS~~~p-d 150 (300)
.+++|..-.+...+|..+|+.| |+++...-+ +++. +.++ ..++.. .+.+.|++|+||-....- .
T Consensus 276 ~d~Vv~vPd~g~~~A~~~A~~l-gip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDDvitTG~ 354 (445)
T PRK08525 276 ADFVVPVPDSGVPAAIGYAQES-GIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIVRGT 354 (445)
T ss_pred CCeEEECCchHHHHHHHHHHHh-CCCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEecccCcHH
Confidence 3454444444568899999999 787632111 2221 1110 122222 345899999999776443 4
Q ss_pred hHHHHHHHHHhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccC
Q 022268 151 KIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFG 229 (300)
Q Consensus 151 ~lmELLllidAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~ 229 (300)
.+.+ ++++||++||++|.+.+..=+.+.... ..+ ..++.+++|+-|.--.++..+++
T Consensus 355 Tl~~---a~~~Lr~aGA~~V~v~~~hp~~~~~~~-------------~~i------~~~~~~~li~~~~~~~ei~~~~~ 411 (445)
T PRK08525 355 TSKK---IVSLLRAAGAKEIHLRIACPEIKFPCY-------------YGI------DTPTFEELISANKSVEEVRKYIG 411 (445)
T ss_pred HHHH---HHHHHHhcCCCEEEEEEECCCcCCchh-------------hhC------cCCChhhEEEcCCCHHHHHHHhC
Confidence 4444 678899999999998876543332211 111 12456677777765566666655
No 50
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=78.38 E-value=3.7 Score=35.87 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCC
Q 022268 240 IPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPM 278 (300)
Q Consensus 240 ~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~ 278 (300)
...+++.|.+....++++||+|+.|+..+|..+++.|+.
T Consensus 12 i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~ 50 (166)
T TIGR01203 12 IAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAV 50 (166)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCC
Confidence 455666665432336899999999999999999998873
No 51
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=77.94 E-value=24 Score=30.59 Aligned_cols=75 Identities=13% Similarity=0.016 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHhCCCceeeeEEeee------------CCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHH
Q 022268 93 CPETHSLAERVAAQSDAIELRSINWRKF------------KDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVI 159 (300)
Q Consensus 93 gsss~~LA~~IA~~L~gi~l~~i~~~rF------------pDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLlli 159 (300)
....-.+|..+|..| ++++..+..... .+|+..+.+......+|++|+||-.+... ..+.+ ++
T Consensus 54 ~~~G~~~A~~la~~L-~~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~---a~ 129 (169)
T TIGR01090 54 EARGFIFGAALAYKL-GVGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEA---TD 129 (169)
T ss_pred hhccHHHHHHHHHHH-CCCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHH---HH
Confidence 355568999999999 788654432222 23332233433334689999999777654 34444 45
Q ss_pred HhcccCCCceEE
Q 022268 160 YALPKLFVSSFT 171 (300)
Q Consensus 160 dAlrragAk~It 171 (300)
+.++++|++.+.
T Consensus 130 ~~L~~~Ga~~v~ 141 (169)
T TIGR01090 130 ELIRKLGGEVVE 141 (169)
T ss_pred HHHHHcCCEEEE
Confidence 666778887553
No 52
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=76.45 E-value=18 Score=36.99 Aligned_cols=118 Identities=10% Similarity=-0.005 Sum_probs=66.6
Q ss_pred eEeecCCCCccccCCCcc-----cccccccccccCCCCcEEEEeCCCCHHHHHHHHHHhCCCceeee-EEeee-------
Q 022268 54 IDFKSGSEPIHLIQNSTS-----TAATSASESASRTMKKVCLFYCPETHSLAERVAAQSDAIELRSI-NWRKF------- 120 (300)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i-~~~rF------- 120 (300)
.||.=-..++|..++.+. .+.-...+-. ....++++-.-.+...+|..+|+.| |+++... ...++
T Consensus 253 fe~vYfarpds~~~g~~v~~~R~~~G~~La~~~-~~~~D~Vv~vPdsg~~~A~~~A~~l-gip~~~~l~r~~~~~rtfi~ 330 (469)
T PRK05793 253 FEYIYFARPDSVIDGISVYESRVRAGRQLYKEY-PVDADIVIGVPDSGIPAAIGYAEAS-GIPYGIGFIKNKYVGRTFIA 330 (469)
T ss_pred EEEEEeccCCcccCCeEhhHHHHHHHHHHHHhc-CCCCCEEEEcCccHHHHHHHHHHHh-CCCEeeeEEEeeeccccccC
Confidence 455545556666665533 1112222111 1123454444455568999999999 7988542 22222
Q ss_pred CCCC-e--eEEee---cCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCCCceEEEEecc
Q 022268 121 KDGF-P--NLFIP---NAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLFVSSFTLVLPF 176 (300)
Q Consensus 121 pDGE-~--Ei~V~---i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrragAk~ItlVIPY 176 (300)
++.+ + ..+++ +...++|++|+||-..-.- ..+.+ ++.+||++||++|.+.+-.
T Consensus 331 ~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~ItTGtTl~~---~~~~Lr~aGAk~V~~~~~~ 390 (469)
T PRK05793 331 PSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRGTTSKR---LVELLRKAGAKEVHFRVSS 390 (469)
T ss_pred hhHhhhhhhheEecccCccccCCCEEEEEccccCchHHHHH---HHHHHHHcCCCEEEEEEEC
Confidence 1110 0 12222 2256899999999665433 34444 7788999999999988754
No 53
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=75.88 E-value=22 Score=31.95 Aligned_cols=84 Identities=14% Similarity=0.083 Sum_probs=53.1
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCee-EEeec---CCCCCCCeEEEEeecCCc-hhHHHHHHHHHh
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPN-LFIPN---AHGIRGQHVAFLASFSSP-GKIFEQLSVIYA 161 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~E-i~V~i---~esVrG~dV~IIqS~~~p-d~lmELLllidA 161 (300)
++++=...+.-.+|..+|..| +.++..+.-.++..|+.+ ..-.+ -..++|++|+||..+-+- ..+.+.. ++
T Consensus 87 D~Ivgi~~gG~~~A~~lA~~L-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~ai---~~ 162 (200)
T PRK02277 87 DVVVGIAKSGVPLATLVADEL-GKDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETI---EY 162 (200)
T ss_pred CEEEeeccCCHHHHHHHHHHh-CCCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCchHHHHHHH---HH
Confidence 444433566779999999999 788766655555333211 11111 135789999999887554 4555544 55
Q ss_pred cccCCCceEEEEe
Q 022268 162 LPKLFVSSFTLVL 174 (300)
Q Consensus 162 lrragAk~ItlVI 174 (300)
++++|++.+.++.
T Consensus 163 l~~~Ga~~v~v~v 175 (200)
T PRK02277 163 LKEHGGKPVAVVV 175 (200)
T ss_pred HHHcCCEEEEEEE
Confidence 6788987764443
No 54
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=74.67 E-value=19 Score=36.59 Aligned_cols=86 Identities=10% Similarity=0.057 Sum_probs=54.1
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCceee-eEEeee-------CC-CCeeEEee---cCCCCCCCeEEEEeecCCc-hhH
Q 022268 86 KKVCLFYCPETHSLAERVAAQSDAIELRS-INWRKF-------KD-GFPNLFIP---NAHGIRGQHVAFLASFSSP-GKI 152 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~gi~l~~-i~~~rF-------pD-GE~Ei~V~---i~esVrG~dV~IIqS~~~p-d~l 152 (300)
.++++-.-.+...+|..+|+.+ |++... +...++ |. -+..+..+ +...++|++|+||-..-.- ..+
T Consensus 272 ~D~Vv~VPdsg~~~A~~~a~~l-gip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~VlLVDD~IttGtTl 350 (442)
T PRK08341 272 GDVVIAVPDSGRTAALGFAHES-GIPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKRVVLVDDSIVRGTTM 350 (442)
T ss_pred CceEEEecCchHHHHHHHHHHh-CCCchheEEEeccccccccCcCchhhhheeeecccccccCCCEEEEEeeeeccHHHH
Confidence 4555544455557999999999 788765 333332 11 11122222 2356789999999665433 333
Q ss_pred HHHHHHHHhcccCCCceEEEEec
Q 022268 153 FEQLSVIYALPKLFVSSFTLVLP 175 (300)
Q Consensus 153 mELLllidAlrragAk~ItlVIP 175 (300)
-+ ++++|+++||++|.+.+.
T Consensus 351 ~~---~~~~L~~aGAk~V~~~~~ 370 (442)
T PRK08341 351 KR---IVKMLRDAGAREVHVRIA 370 (442)
T ss_pred HH---HHHHHHhcCCcEEEEEEc
Confidence 33 668889999999988773
No 55
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=73.68 E-value=41 Score=31.61 Aligned_cols=86 Identities=7% Similarity=0.106 Sum_probs=54.2
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHhCC----------Cce---eeeEEeeeCCCCe--eEEee--cCCCCCCCeEEEEeecC
Q 022268 86 KKVCLFY-CPETHSLAERVAAQSDA----------IEL---RSINWRKFKDGFP--NLFIP--NAHGIRGQHVAFLASFS 147 (300)
Q Consensus 86 ~~~~Ifs-gsss~~LA~~IA~~L~g----------i~l---~~i~~~rFpDGE~--Ei~V~--i~esVrG~dV~IIqS~~ 147 (300)
++++|++ .++.-.+|..+.+.|.. ++. .-+.++.|-|... ++.+. ...++.|++|+||-.+.
T Consensus 81 ~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~~~~l~gk~VLIVDDIi 160 (241)
T PTZ00149 81 EELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDDLSCLKDKHVLIVEDII 160 (241)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEecccccccCCCEEEEEEeEe
Confidence 3444444 68888888888888831 123 5666777754211 34443 23468999999998886
Q ss_pred Cc-hhHHHHHHHHHhcccCCCceEEEEe
Q 022268 148 SP-GKIFEQLSVIYALPKLFVSSFTLVL 174 (300)
Q Consensus 148 ~p-d~lmELLllidAlrragAk~ItlVI 174 (300)
+- ..+.+++ +.|++.|+++|.++.
T Consensus 161 dTG~Tl~~~~---~~L~~~g~~~V~va~ 185 (241)
T PTZ00149 161 DTGNTLVKFC---EYLKKFEPKTIRIAT 185 (241)
T ss_pred ChHHHHHHHH---HHHHhcCCCEEEEEE
Confidence 55 4444444 556778888875554
No 56
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=73.63 E-value=3.7 Score=36.22 Aligned_cols=57 Identities=5% Similarity=-0.084 Sum_probs=37.4
Q ss_pred hhhhhcccCCCcccCCcccHHHHHHHHhc----CCCCCCeEEEeCCcccHHHHHHHHhhCCCc
Q 022268 221 ALQERFYFGDTILPCFESAIPLLLNRLQQ----LPDSDNISIAFPDDGAWKRFHKQLQHFPMV 279 (300)
Q Consensus 221 s~qi~~fF~~~v~~l~L~a~~lL~~~l~~----~~~~~n~vIVSPD~GA~kRA~~~A~~l~~v 279 (300)
.-++++.|.++... +.+.+.+.+.+.+ ....+..+||+|+.|+...|..+|+.++..
T Consensus 17 ~~~~~~~~~i~~~k--~~~dp~l~~~~~~~La~~l~~~~d~Iv~v~~gGiplA~~lA~~L~~p 77 (178)
T PRK07322 17 LIRVGPDLAIALFV--ILGDTELTEAAAEALAKRLPTEVDVLVTPETKGIPLAHALSRRLGKP 77 (178)
T ss_pred eeEeCCCCEEEEEh--hhCCHHHHHHHHHHHHHHcCCCCCEEEEeccCCHHHHHHHHHHHCCC
Confidence 34566666655554 3555555555432 111145689999999999999999877643
No 57
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=73.56 E-value=30 Score=30.86 Aligned_cols=78 Identities=15% Similarity=0.079 Sum_probs=49.3
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccC
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKL 165 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrra 165 (300)
++++=...+.-.+|..+|..| ++++.-..-.....|+ +..+.. ..++|++|+||..+-+. ..+.+. ++.+++.
T Consensus 66 d~Ivgi~~gG~~~A~~la~~L-~~~~~~~rk~~~~~g~-~~~~~~-~~~~g~~VliVDDvi~tG~Tl~~~---~~~l~~~ 139 (202)
T PRK00455 66 DVVAGPATGGIPLAAAVARAL-DLPAIFVRKEAKDHGE-GGQIEG-RRLFGKRVLVVEDVITTGGSVLEA---VEAIRAA 139 (202)
T ss_pred CEEEecccCcHHHHHHHHHHh-CCCEEEEecccCCCCC-CceEEc-cCCCCCEEEEEecccCCcHHHHHH---HHHHHHc
Confidence 444433567889999999999 7887654433333343 223332 34679999999887544 445554 4566677
Q ss_pred CCceE
Q 022268 166 FVSSF 170 (300)
Q Consensus 166 gAk~I 170 (300)
|++.+
T Consensus 140 Ga~~v 144 (202)
T PRK00455 140 GAEVV 144 (202)
T ss_pred CCEEE
Confidence 87654
No 58
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=71.85 E-value=35 Score=35.12 Aligned_cols=85 Identities=13% Similarity=0.043 Sum_probs=54.6
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCceee-eEEeeeCC----------CCeeEEeec---CCCCCCCeEEEEeecCCc-h
Q 022268 86 KKVCLFYCPETHSLAERVAAQSDAIELRS-INWRKFKD----------GFPNLFIPN---AHGIRGQHVAFLASFSSP-G 150 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~gi~l~~-i~~~rFpD----------GE~Ei~V~i---~esVrG~dV~IIqS~~~p-d 150 (300)
..++|---.+...+|..+++.+ ++++.. +...++-. .+..++++. .+.+.|++|+||-....- .
T Consensus 296 ~D~Vv~VP~sg~~~A~~la~~l-gip~~~~lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~gk~vvlvDD~i~tG~ 374 (479)
T PRK09123 296 ADVVVPVPDSGVPAAIGYAQES-GIPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVRGT 374 (479)
T ss_pred CeEEEEcCccHHHHHHHHHHhc-CCCeeheEEEEeecCccccccccccccccEEEEecccccccCCCEEEEEeceeCchH
Confidence 4455544566667999999999 788753 22223421 110233322 234789999999776543 3
Q ss_pred hHHHHHHHHHhcccCCCceEEEEe
Q 022268 151 KIFEQLSVIYALPKLFVSSFTLVL 174 (300)
Q Consensus 151 ~lmELLllidAlrragAk~ItlVI 174 (300)
.+. -++++|+++||++|.+.+
T Consensus 375 Tl~---~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 375 TSR---KIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred HHH---HHHHHHHHcCCCEEEEEE
Confidence 444 477888999999999988
No 59
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=71.21 E-value=4.2 Score=36.35 Aligned_cols=62 Identities=11% Similarity=-0.025 Sum_probs=38.8
Q ss_pred EEEEecCChhhhhcccCC-Ccc-cCCcccHHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCC
Q 022268 213 SLVTFDIHALQERFYFGD-TIL-PCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFP 277 (300)
Q Consensus 213 rVItvDlHs~qi~~fF~~-~v~-~l~L~a~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~ 277 (300)
|++.--+|+.....|++. ++. + ....++++.+.+..+.+-.+|++||.|+..+|..+|..++
T Consensus 11 ~~~~~~~~~~~~~~~~D~~~~l~P---~~l~~~~~~l~~~~~~~~D~Ivg~e~~Gi~lA~~vA~~l~ 74 (187)
T PRK12560 11 RVVNSGKALTTVNEFTDQLPALRP---KVLKETAKEIIKYIDKDIDKIVTEEDKGAPLATPVSLLSG 74 (187)
T ss_pred CccCCCCCCCcceeEEeChhhcCH---HHHHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHHhhC
Confidence 666667777776777773 221 1 1122223333332233456999999999999999996544
No 60
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=70.28 E-value=47 Score=29.02 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=50.4
Q ss_pred cEEEEe-CCCCHHHHHHHHHHhC---C--CceeeeEEeeeCCCCe----eEE---eecCCCCCCCeEEEEeecCCc-hhH
Q 022268 87 KVCLFY-CPETHSLAERVAAQSD---A--IELRSINWRKFKDGFP----NLF---IPNAHGIRGQHVAFLASFSSP-GKI 152 (300)
Q Consensus 87 ~~~Ifs-gsss~~LA~~IA~~L~---g--i~l~~i~~~rFpDGE~----Ei~---V~i~esVrG~dV~IIqS~~~p-d~l 152 (300)
+..|++ ..+.-.+|..+++.|+ + +++..+....|-|+.. ... ..+..++.|++|+||-.+.+- ..+
T Consensus 32 ~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl 111 (176)
T PRK05205 32 NLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTI 111 (176)
T ss_pred CeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCcHHHH
Confidence 444444 5677889999999883 2 2355555666655420 111 234457999999999887655 344
Q ss_pred HHHHHHHHhcccCC-CceEEE
Q 022268 153 FEQLSVIYALPKLF-VSSFTL 172 (300)
Q Consensus 153 mELLllidAlrrag-Ak~Itl 172 (300)
.++ ++.|++.| +++|.+
T Consensus 112 ~~~---~~~L~~~G~~~~v~~ 129 (176)
T PRK05205 112 RAA---LDALFDYGRPARVQL 129 (176)
T ss_pred HHH---HHHHHhcCCCcEEEE
Confidence 443 45666666 565533
No 61
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=69.97 E-value=70 Score=28.51 Aligned_cols=75 Identities=13% Similarity=0.049 Sum_probs=48.5
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCC-CCCCCeEEEEeecCCc-hhHHHHHHHHHhccc
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAH-GIRGQHVAFLASFSSP-GKIFEQLSVIYALPK 164 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~e-sVrG~dV~IIqS~~~p-d~lmELLllidAlrr 164 (300)
+++|=...+.-.+|..+|..| ++++.-. .+.. | +..+.... -.+|++|+||..+-+. ..+.++ ++.+++
T Consensus 60 d~Ivgi~~gGi~~A~~la~~L-~~~~i~~--~k~~-~--~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a---~~~l~~ 130 (187)
T TIGR01367 60 DFIVGPAMGGVILGYEVARQL-SVRSIFA--EREG-G--GMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEA---IRAIEG 130 (187)
T ss_pred CEEEEEccCcHHHHHHHHHHh-CCCeEEE--EEeC-C--cEEEeecccCCCCCEEEEEEeeecchHHHHHH---HHHHHH
Confidence 444434577889999999999 6876433 3333 5 35554332 2579999999887654 444443 355688
Q ss_pred CCCceE
Q 022268 165 LFVSSF 170 (300)
Q Consensus 165 agAk~I 170 (300)
.|++.+
T Consensus 131 ~Ga~vv 136 (187)
T TIGR01367 131 QGGQVV 136 (187)
T ss_pred cCCeEE
Confidence 898755
No 62
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=69.89 E-value=7.6 Score=34.36 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=31.1
Q ss_pred cHHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCC
Q 022268 239 AIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPM 278 (300)
Q Consensus 239 a~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~ 278 (300)
....++++|.+....++++||+|+.|+..+|+.+|+.|+.
T Consensus 25 ~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~ 64 (181)
T PRK09162 25 AIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDF 64 (181)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCC
Confidence 4566777776532345679999999999999999988774
No 63
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=68.65 E-value=49 Score=33.55 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=72.8
Q ss_pred eeeEeecCCCCccccCCCcc-----cccccccccccCCCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEe------ee
Q 022268 52 WSIDFKSGSEPIHLIQNSTS-----TAATSASESASRTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWR------KF 120 (300)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~------rF 120 (300)
=..||.=-..++|..++.+. .+.-..++- ..-..++++-.-.+....|..+|+.+ |+++...-++ +|
T Consensus 236 c~fe~vYfarpds~~~g~~v~~~R~~~g~~La~~-~~~~~D~Vv~VP~sg~~~A~~la~~l-gip~~~~l~r~~~~~r~~ 313 (442)
T TIGR01134 236 CIFEYVYFARPDSVIDGISVYKARKRMGEKLARE-SPVEADVVIPVPDSGRSAALGFAQAS-GIPYREGLIKNRYVGRTF 313 (442)
T ss_pred eEEEEEEecCCcceECCeEHHHHHHHHHHHHHHh-cCCCCEEEEEccCCHHHHHHHHHHHh-CCCchHHeEEeccccccc
Confidence 34555555666677665532 112222211 11123444433344567899999999 7876532222 22
Q ss_pred --CCC-Cee--EEeec---CCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCCCceEEEEec--------cCCC---c
Q 022268 121 --KDG-FPN--LFIPN---AHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLFVSSFTLVLP--------FFPT---G 180 (300)
Q Consensus 121 --pDG-E~E--i~V~i---~esVrG~dV~IIqS~~~p-d~lmELLllidAlrragAk~ItlVIP--------Yf~Y---A 180 (300)
|+. +++ ++.++ ...++|+.|+||...-.- ..+-+ ++.+|+++||+.|.+++- ||+- .
T Consensus 314 i~~~q~~R~~~v~~k~~~~~~~~~gk~v~lvDD~ittG~T~~~---~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~ 390 (442)
T TIGR01134 314 IMPTQELRELSVRLKLNPIREVFRGKRVVLVDDSIVRGTTSRQ---IVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPT 390 (442)
T ss_pred cCCCHHHHHHHHhhhcccccccCCCCEEEEEeccccccHHHHH---HHHHHHHcCCcEEEEEEccCCccCCcccccCCCC
Confidence 221 011 11112 246789999999776433 33433 567888999999999998 7777 5
Q ss_pred ccccc
Q 022268 181 TSERM 185 (300)
Q Consensus 181 RQDR~ 185 (300)
|++..
T Consensus 391 ~~el~ 395 (442)
T TIGR01134 391 REELI 395 (442)
T ss_pred HHHHh
Confidence 55544
No 64
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=67.86 E-value=64 Score=29.24 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=51.8
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHhCCC--ceeeeEEeeeCCCCe---eEEee--cCCCCCCCeEEEEeecCCchhHHHHHH
Q 022268 86 KKVCLFY-CPETHSLAERVAAQSDAI--ELRSINWRKFKDGFP---NLFIP--NAHGIRGQHVAFLASFSSPGKIFEQLS 157 (300)
Q Consensus 86 ~~~~Ifs-gsss~~LA~~IA~~L~gi--~l~~i~~~rFpDGE~---Ei~V~--i~esVrG~dV~IIqS~~~pd~lmELLl 157 (300)
+++.+++ ..++-.++..+...+ ++ ++.-+.+..|-+|.. ++++. +.++++|+||.||-.+-+.-.- |-.
T Consensus 35 ~~~~vv~iLkGs~~F~~dL~r~i-~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDsG~T--Ls~ 111 (178)
T COG0634 35 KDPLVVGVLKGSFPFMADLIRAI-DFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDSGLT--LSK 111 (178)
T ss_pred CceEEEEEcccchhhHHHHHHhc-CCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEecccccChh--HHH
Confidence 4444444 577777777888777 44 456777777755420 24443 3578999999999887544211 122
Q ss_pred HHHhcccCCCceEEEE
Q 022268 158 VIYALPKLFVSSFTLV 173 (300)
Q Consensus 158 lidAlrragAk~ItlV 173 (300)
+.+-|+..||+++.++
T Consensus 112 i~~~l~~r~a~sv~i~ 127 (178)
T COG0634 112 VRDLLKERGAKSVRIA 127 (178)
T ss_pred HHHHHHhCCCCeEEEE
Confidence 2333445677776553
No 65
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=67.68 E-value=6.2 Score=31.48 Aligned_cols=82 Identities=12% Similarity=0.191 Sum_probs=51.5
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhc
Q 022268 84 TMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYAL 162 (300)
Q Consensus 84 ~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAl 162 (300)
..+++.|++.-.+..+|+..+.+| .+++.....-...+ +..-.....+...|++|+=|.... .+++++ +..+
T Consensus 4 ~~~~i~i~G~G~s~~~A~~~~~~l--~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~---~~~a 76 (131)
T PF01380_consen 4 KAKRIYIYGSGSSYGVAQYAALKL--QKLGRIVVISYEAG--EFFHGPLENLDPDDLVIIISYSGETRELIEL---LRFA 76 (131)
T ss_dssp TSSEEEEEESTHHHHHHHHHHHHH--HHHHSSEEEEEEHH--HHHTTGGGGCSTTEEEEEEESSSTTHHHHHH---HHHH
T ss_pred CCCEEEEEEcchHHHHHHHHHHHH--HHhcCcceeccchH--HHhhhhcccccccceeEeeeccccchhhhhh---hHHH
Confidence 346788887777888999998888 35666555555555 222222234555788887775433 344444 4467
Q ss_pred ccCCCceEEE
Q 022268 163 PKLFVSSFTL 172 (300)
Q Consensus 163 rragAk~Itl 172 (300)
|+.|++-|.+
T Consensus 77 k~~g~~vi~i 86 (131)
T PF01380_consen 77 KERGAPVILI 86 (131)
T ss_dssp HHTTSEEEEE
T ss_pred HhcCCeEEEE
Confidence 7888765444
No 66
>PLN02293 adenine phosphoribosyltransferase
Probab=66.68 E-value=84 Score=28.13 Aligned_cols=79 Identities=10% Similarity=0.051 Sum_probs=47.5
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCC------------CCeeEEeecCCCC-CCCeEEEEeecCCc-hhH
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKD------------GFPNLFIPNAHGI-RGQHVAFLASFSSP-GKI 152 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpD------------GE~Ei~V~i~esV-rG~dV~IIqS~~~p-d~l 152 (300)
..++=.....-.||..+|..| |.++.-+.-.+..+ |+..+.++. ..+ +|+.|+||..+-.- ..+
T Consensus 64 d~Ivg~e~~Gi~lA~~lA~~L-g~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~-~~i~~G~rVlIVDDvitTG~T~ 141 (187)
T PLN02293 64 SVVAGIEARGFIFGPPIALAI-GAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHV-GAVEPGERALVIDDLIATGGTL 141 (187)
T ss_pred CEEEEeCCCchHHHHHHHHHH-CCCEEEEEecCCCCCceEEEEEeccCCceEEEEEc-CccCCCCEEEEEeccccchHHH
Confidence 343333455668999999999 78866444433322 321123332 234 79999999877544 444
Q ss_pred HHHHHHHHhcccCCCceE
Q 022268 153 FEQLSVIYALPKLFVSSF 170 (300)
Q Consensus 153 mELLllidAlrragAk~I 170 (300)
.+ +++.++++|++.+
T Consensus 142 ~~---~~~~l~~~Ga~~v 156 (187)
T PLN02293 142 CA---AINLLERAGAEVV 156 (187)
T ss_pred HH---HHHHHHHCCCEEE
Confidence 44 3467777888644
No 67
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=65.90 E-value=55 Score=28.69 Aligned_cols=78 Identities=14% Similarity=0.062 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCCCceEE
Q 022268 93 CPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLFVSSFT 171 (300)
Q Consensus 93 gsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrragAk~It 171 (300)
..+.-.+|..+|..| |.++.-+.-.+...|+ ..... ..++|++|+||-.+-+. ..+.+ .+++++++|| .+.
T Consensus 64 ~~gGi~~A~~~a~~l-~~p~~~~rK~~k~~g~--~~~~~-g~~~g~~VlIVDDvi~TG~T~~~---~~~~l~~~Ga-~v~ 135 (170)
T PRK13811 64 AVGGVPLAVAVSLAA-GKPYAIIRKEAKDHGK--AGLII-GDVKGKRVLLVEDVTTSGGSALY---GIEQLRAAGA-VVD 135 (170)
T ss_pred CcCcHHHHHHHHHHH-CCCEEEEecCCCCCCC--cceEE-cccCCCEEEEEEecccccHHHHH---HHHHHHHCCC-eEE
Confidence 345678999999999 7888766665566674 22222 35899999999887544 45444 4566677887 444
Q ss_pred EEeccCC
Q 022268 172 LVLPFFP 178 (300)
Q Consensus 172 lVIPYf~ 178 (300)
.++-.+-
T Consensus 136 ~~~~~vd 142 (170)
T PRK13811 136 DVVTVVD 142 (170)
T ss_pred EEEEEEE
Confidence 4444443
No 68
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=65.06 E-value=13 Score=33.15 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=20.0
Q ss_pred CCeEEEeCCcccHHHHHHHHhhCC
Q 022268 254 DNISIAFPDDGAWKRFHKQLQHFP 277 (300)
Q Consensus 254 ~n~vIVSPD~GA~kRA~~~A~~l~ 277 (300)
+..+||+|+.|+...|..+|..|+
T Consensus 64 ~~d~Ivgi~~gG~~~A~~la~~L~ 87 (202)
T PRK00455 64 EFDVVAGPATGGIPLAAAVARALD 87 (202)
T ss_pred CCCEEEecccCcHHHHHHHHHHhC
Confidence 345899999999999999995543
No 69
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=65.02 E-value=34 Score=27.37 Aligned_cols=78 Identities=12% Similarity=0.039 Sum_probs=46.2
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccC
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKL 165 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrra 165 (300)
++.+++.-.+..+|+.++.++. .++. ...-..|+| ....-...++.+|++|+-|.+.. .++++ ++..+|+.
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~--~~g~-~~~~~~~~~--~~~~~~~~~~~~d~vi~iS~sG~t~~~~~---~~~~a~~~ 73 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLS--STGT-PAFFLHPTE--ALHGDLGMVTPGDVVIAISNSGETDELLN---LLPHLKRR 73 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhh--cCCC-ceEEcccch--hhccccCcCCCCCEEEEEeCCCCCHHHHH---HHHHHHHC
Confidence 4667766667788998888882 3332 222335553 22222234556788888777543 44444 45567778
Q ss_pred CCceEEE
Q 022268 166 FVSSFTL 172 (300)
Q Consensus 166 gAk~Itl 172 (300)
|++-|.+
T Consensus 74 g~~vi~i 80 (128)
T cd05014 74 GAPIIAI 80 (128)
T ss_pred CCeEEEE
Confidence 8765544
No 70
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=65.02 E-value=10 Score=33.03 Aligned_cols=24 Identities=8% Similarity=-0.208 Sum_probs=20.9
Q ss_pred CCeEEEeCCcccHHHHHHHHhhCC
Q 022268 254 DNISIAFPDDGAWKRFHKQLQHFP 277 (300)
Q Consensus 254 ~n~vIVSPD~GA~kRA~~~A~~l~ 277 (300)
+..+||+|+.|+...|..+|+.++
T Consensus 51 ~~d~Ivgv~~~Gi~~a~~la~~l~ 74 (175)
T PRK02304 51 DIDKIVGIEARGFIFGAALAYKLG 74 (175)
T ss_pred CCCEEEEEccchHHHHHHHHHHhC
Confidence 457999999999999999996654
No 71
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=64.74 E-value=12 Score=32.85 Aligned_cols=26 Identities=15% Similarity=-0.088 Sum_probs=21.9
Q ss_pred CCCeEEEeCCcccHHHHHHHHhhCCC
Q 022268 253 SDNISIAFPDDGAWKRFHKQLQHFPM 278 (300)
Q Consensus 253 ~~n~vIVSPD~GA~kRA~~~A~~l~~ 278 (300)
.+..+||+|+.|+...|..+|..++.
T Consensus 53 ~~~d~Ivg~~~gG~~~A~~la~~l~~ 78 (173)
T TIGR00336 53 LEFDVIAGPALGGIPIATAVSVKLAK 78 (173)
T ss_pred CCCCEEEccccChHHHHHHHHHHhcC
Confidence 35679999999999999999966543
No 72
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=64.40 E-value=13 Score=33.29 Aligned_cols=37 Identities=11% Similarity=-0.099 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCC
Q 022268 240 IPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFP 277 (300)
Q Consensus 240 ~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~ 277 (300)
...+++++++. +.+..+||+++.|+...|..+|..++
T Consensus 45 ~~~La~~i~~~-~~~~d~Ivgi~~gGi~~A~~la~~L~ 81 (187)
T TIGR01367 45 GGELAQKILDY-GLKVDFIVGPAMGGVILGYEVARQLS 81 (187)
T ss_pred HHHHHHHHHHh-CCCCCEEEEEccCcHHHHHHHHHHhC
Confidence 34444555432 33567999999999999999997654
No 73
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.36 E-value=31 Score=34.21 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=79.3
Q ss_pred HHHHHHHHHhCCCceeeeE--EeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhcccCCCceEEEEec
Q 022268 98 SLAERVAAQSDAIELRSIN--WRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPKLFVSSFTLVLP 175 (300)
Q Consensus 98 ~LA~~IA~~L~gi~l~~i~--~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlrragAk~ItlVIP 175 (300)
-.|-.+|..+ |++...+. +..|..- +-+.++-....| +.+|-... +.+.-.+.-.++++++...+++++|+.
T Consensus 279 laAia~a~~l-gi~~~~i~~~L~~f~g~--~~R~e~v~~~~g--v~~idDs~-atN~~a~~~al~~l~~~~~~~iilI~G 352 (448)
T PRK03803 279 LAALALGEAA-GLPKEAMLEVLRTFTGL--PHRCEWVREVAG--VDYYNDSK-GTNVGATVAAIEGLGAHIQGKLVLIAG 352 (448)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHhhCCCC--CCceEEEEEeCC--eEEEEcCC-cCCHHHHHHHHHhhhhcCCCCEEEEEC
Confidence 3455666677 66654433 4566433 233332212222 34444322 223333344444454322247888875
Q ss_pred cCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccC--CCcccCCcccHHHHHHHHhcCCCC
Q 022268 176 FFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFG--DTILPCFESAIPLLLNRLQQLPDS 253 (300)
Q Consensus 176 Yf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~--~~v~~l~L~a~~lL~~~l~~~~~~ 253 (300)
-+. .|.-+ + -+.+.+.. -++.|+++-.+...+...+. .++.. ........+++.+....
T Consensus 353 g~~---k~~d~---~-----~l~~~l~~------~~~~vil~G~~~~~i~~~l~~~~~~~~--~~~~~~a~~~a~~~a~~ 413 (448)
T PRK03803 353 GDG---KGADF---S-----PLREPVAK------YVRAVVLIGRDADKIAAALGGAVPLVR--VATLAEAVAKAAELAQA 413 (448)
T ss_pred CCC---CCCCH---H-----HHHHHHHh------hCCEEEEECCCHHHHHHHHhcCCCEEE--eCCHHHHHHHHHHhCCC
Confidence 432 12211 1 14555552 35789999888777765553 12221 12344444555443345
Q ss_pred CCeEEEeCCcccHHHHHHHHh
Q 022268 254 DNISIAFPDDGAWKRFHKQLQ 274 (300)
Q Consensus 254 ~n~vIVSPD~GA~kRA~~~A~ 274 (300)
++.|++||-.+.....+.|.+
T Consensus 414 gdvVL~SPa~aSfd~f~~~~~ 434 (448)
T PRK03803 414 GDIVLLSPACASLDMFKNFEA 434 (448)
T ss_pred CCEEEeCchhhcccccCCHHH
Confidence 689999999999988888775
No 74
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=59.77 E-value=62 Score=28.23 Aligned_cols=82 Identities=12% Similarity=-0.049 Sum_probs=47.9
Q ss_pred EEEeC-CCCHHHHHHHHHHhCCCc-----eeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHh
Q 022268 89 CLFYC-PETHSLAERVAAQSDAIE-----LRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYA 161 (300)
Q Consensus 89 ~Ifsg-sss~~LA~~IA~~L~gi~-----l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidA 161 (300)
.|++- .+.-.+|..||..| +.+ +.-+.-.+...|+ ......+..+|+.|+||..+.+. ..+.+ +++.
T Consensus 57 ~Ivg~~~gG~~~A~~la~~l-~~~~~~~~~~~~rk~~k~~g~--~~~~~g~~~~g~~VlIVDDvi~TG~Tl~~---a~~~ 130 (173)
T TIGR00336 57 VIAGPALGGIPIATAVSVKL-AKPGGDIPLCFNRKEAKDHGE--GGNIEGELLEGDKVVVVEDVITTGTSILE---AVEI 130 (173)
T ss_pred EEEccccChHHHHHHHHHHh-cCcCCCceEEEEcCCcccCCC--CCceecCCCCCCEEEEEeccccChHHHHH---HHHH
Confidence 44443 45668999999999 677 3333222223353 22222334579999999887654 44544 4466
Q ss_pred cccCCCceEEEEeccC
Q 022268 162 LPKLFVSSFTLVLPFF 177 (300)
Q Consensus 162 lrragAk~ItlVIPYf 177 (300)
++++|++ +..++-.+
T Consensus 131 l~~~Ga~-v~~~~vlv 145 (173)
T TIGR00336 131 IQAAGGQ-VAGVIIAV 145 (173)
T ss_pred HHHcCCe-EEEEEEEE
Confidence 7778864 34444333
No 75
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=59.18 E-value=53 Score=33.90 Aligned_cols=85 Identities=7% Similarity=-0.008 Sum_probs=51.4
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEe-eeC-------CC-Cee--EEe--e-cCCCCCCCeEEEEeecCCc-hh
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWR-KFK-------DG-FPN--LFI--P-NAHGIRGQHVAFLASFSSP-GK 151 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~-rFp-------DG-E~E--i~V--~-i~esVrG~dV~IIqS~~~p-d~ 151 (300)
.++|-.-.+...+|..+|+.+ |+++..--++ ++. +. +++ ++. . +...++|++|+||-....- ..
T Consensus 295 D~VvpVP~s~~~~A~~la~~l-gip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~gK~VlLVDDvitTGaT 373 (501)
T PRK09246 295 DVVIPIPDTSRDAALEIARIL-GVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTT 373 (501)
T ss_pred cEEEEeCccHHHHHHHHHHHH-CCCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccccCCeEEEEeccccccHH
Confidence 444333344567899999999 7887532222 221 10 000 111 1 2356889999999776443 34
Q ss_pred HHHHHHHHHhcccCCCceEEEEec
Q 022268 152 IFEQLSVIYALPKLFVSSFTLVLP 175 (300)
Q Consensus 152 lmELLllidAlrragAk~ItlVIP 175 (300)
+-+ ++.+|+++||++|.+.+-
T Consensus 374 l~~---~~~~L~~aGA~~V~v~v~ 394 (501)
T PRK09246 374 SEQ---IVQMAREAGAKKVYFASA 394 (501)
T ss_pred HHH---HHHHHHHcCCCEEEEEEE
Confidence 444 668899999999877654
No 76
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=57.67 E-value=18 Score=31.47 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCC
Q 022268 240 IPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPM 278 (300)
Q Consensus 240 ~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~ 278 (300)
...+++.+.+ .+..+||+|+.|+...|..+|+.++.
T Consensus 35 ~~~la~~i~~---~~~d~ivgi~~~G~~~A~~la~~L~~ 70 (169)
T TIGR01090 35 IDLLVERYKD---ANIDYIVGPEARGFIFGAALAYKLGV 70 (169)
T ss_pred HHHHHHHhcc---CCCCEEEeehhccHHHHHHHHHHHCC
Confidence 3444444433 24579999999999999999977654
No 77
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=57.31 E-value=40 Score=26.89 Aligned_cols=78 Identities=9% Similarity=0.008 Sum_probs=44.9
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhcccCCC
Q 022268 88 VCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPKLFV 167 (300)
Q Consensus 88 ~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlrragA 167 (300)
+.+++.-++...|...+..|. .++.....-++.+ +..... ..+..+|++|+-|.+.. --|++.+++.+|+.|+
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~--~~~~~~~~~~~~~--~~~~~~-~~~~~~d~~I~iS~sG~--t~e~~~~~~~a~~~g~ 74 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLE--RLAGIPVEVEAAS--EFRYRR-PLLDEDTLVIAISQSGE--TADTLAALRLAKEKGA 74 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHH--HhcCCceEEEehh--HhhhcC-CCCCCCcEEEEEeCCcC--CHHHHHHHHHHHHcCC
Confidence 455554556667777777772 4443333334444 233222 23556888888776543 2256667788888887
Q ss_pred ceEEE
Q 022268 168 SSFTL 172 (300)
Q Consensus 168 k~Itl 172 (300)
+-|.+
T Consensus 75 ~vi~i 79 (126)
T cd05008 75 KTVAI 79 (126)
T ss_pred eEEEE
Confidence 65443
No 78
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=57.18 E-value=95 Score=24.49 Aligned_cols=79 Identities=20% Similarity=0.194 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHhCCCceeeeEEe----------eeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHh
Q 022268 93 CPETHSLAERVAAQSDAIELRSINWR----------KFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYA 161 (300)
Q Consensus 93 gsss~~LA~~IA~~L~gi~l~~i~~~----------rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidA 161 (300)
..+.-.+|..++..| +.+....... .-..+.........+.+.|++|+||-.+.+. ..+.+. ++.
T Consensus 35 ~~~G~~~a~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~vliVDDvi~tG~Tl~~~---~~~ 110 (125)
T PF00156_consen 35 PRGGIPLAAALARAL-GIPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRVLIVDDVIDTGGTLKEA---IEL 110 (125)
T ss_dssp TTTTHHHHHHHHHHH-THEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEEEEEEEEESSSHHHHHH---HHH
T ss_pred hhccHHHHHHHHHHh-CCCccceeeeecccccchhhhhccCceEEeecccccccceeEEEEeeeEcccHHHHHH---HHH
Confidence 566779999999999 6765433321 1112211233444678999999999887654 555544 456
Q ss_pred cccCCCceEEEEec
Q 022268 162 LPKLFVSSFTLVLP 175 (300)
Q Consensus 162 lrragAk~ItlVIP 175 (300)
+++.|++.|.++..
T Consensus 111 L~~~g~~~v~~~vl 124 (125)
T PF00156_consen 111 LKEAGAKVVGVAVL 124 (125)
T ss_dssp HHHTTBSEEEEEEE
T ss_pred HHhCCCcEEEEEEE
Confidence 67888888876653
No 79
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=54.87 E-value=84 Score=31.76 Aligned_cols=144 Identities=9% Similarity=-0.007 Sum_probs=72.4
Q ss_pred HHHHHHHHhCCCceeeeE--Eeee--CCCCeeEEeecCCCCCCCeEEEEeec--CCchhHHHHHHHHHhcccCCCceEEE
Q 022268 99 LAERVAAQSDAIELRSIN--WRKF--KDGFPNLFIPNAHGIRGQHVAFLASF--SSPGKIFEQLSVIYALPKLFVSSFTL 172 (300)
Q Consensus 99 LA~~IA~~L~gi~l~~i~--~~rF--pDGE~Ei~V~i~esVrG~dV~IIqS~--~~pd~lmELLllidAlrragAk~Itl 172 (300)
.|-.++..+ |+++..+. +.+| +.|--+ .+++. +.+..+.||-.. +.|+.+-..|-.+..+.....+++++
T Consensus 298 aAia~a~~l-Gi~~~~i~~~l~~~~~~~gR~~-~~r~~--~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~ 373 (479)
T PRK14093 298 AVLAAAELA-GADLALAALALSQVQPAAGRGV-RHTLE--VGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIA 373 (479)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHhCCCcCCcce-EEEee--cCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEE
Confidence 355556667 67765443 4555 344101 12221 113346677653 35677766666655543212245666
Q ss_pred EeccC--CCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHHHHHHhcC
Q 022268 173 VLPFF--PTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQL 250 (300)
Q Consensus 173 VIPYf--~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~~~l~~~ 250 (300)
|+.=+ -|+|.++. -+.+++.+.. .++|+|+++..+...+...+...-......-...+.+++++.
T Consensus 374 V~G~m~elg~~~~~~--------h~~~~~~~~~-----~~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 440 (479)
T PRK14093 374 VLGDMLELGPRGPEL--------HRGLAEAIRA-----NAIDLVFCCGPLMRNLWDALSSGKRGGYAEDAAALESQVVAA 440 (479)
T ss_pred EECChHHcCcHHHHH--------HHHHHHHHHH-----cCCCEEEEEchhHHHHHHhhcccccceeeCCHHHHHHHHHHh
Confidence 66532 24443321 2566777763 389999999887654433222110000112345566777653
Q ss_pred CCCCCeEEE
Q 022268 251 PDSDNISIA 259 (300)
Q Consensus 251 ~~~~n~vIV 259 (300)
....+.|++
T Consensus 441 ~~~gd~vL~ 449 (479)
T PRK14093 441 IRAGDVIMV 449 (479)
T ss_pred cCCCCEEEE
Confidence 234555555
No 80
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=54.70 E-value=21 Score=32.61 Aligned_cols=33 Identities=9% Similarity=-0.171 Sum_probs=25.7
Q ss_pred CCCeEEEeCCcccHHHHHHHHhhCCCccccccccccCCceeeeee
Q 022268 253 SDNISIAFPDDGAWKRFHKQLQHFPMVLRMPYVDLYCVHHAPAYK 297 (300)
Q Consensus 253 ~~n~vIVSPD~GA~kRA~~~A~~l~~vv~~~~~~~lg~~~a~~~k 297 (300)
.+..+|++|+.|+.-+|..+|. .+|++..+.+|
T Consensus 66 ~~~d~IvG~~~~Gi~~A~~vA~------------~l~~p~~~~RK 98 (206)
T PRK13809 66 FNSSLLCGVPYTALTLATSISL------------KYNIPMVLRRK 98 (206)
T ss_pred CCCCEEEEecCccHHHHHHHHH------------HhCCCEEEEeC
Confidence 3567899999999999999994 45555555555
No 81
>PRK15482 transcriptional regulator MurR; Provisional
Probab=52.72 E-value=27 Score=32.58 Aligned_cols=82 Identities=9% Similarity=-0.028 Sum_probs=50.7
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhcc
Q 022268 84 TMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALP 163 (300)
Q Consensus 84 ~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlr 163 (300)
..+++.|++...+..+|+.++..|. .++. .+.-..|+ +........+...||+|+=|.+.. --|++.+++.++
T Consensus 134 ~A~~I~i~G~G~S~~~A~~l~~~l~--~~g~-~~~~~~d~--~~~~~~~~~~~~~Dv~i~iS~sg~--t~~~~~~~~~a~ 206 (285)
T PRK15482 134 KAPFIQITGLGGSALVGRDLSFKLM--KIGY-RVACEADT--HVQATVSQALKKGDVQIAISYSGS--KKEIVLCAEAAR 206 (285)
T ss_pred hCCeeEEEEeChhHHHHHHHHHHHH--hCCC-eeEEeccH--hHHHHHHhcCCCCCEEEEEeCCCC--CHHHHHHHHHHH
Confidence 4467888887778889999988872 3432 22334565 232222345666799998887643 223444556678
Q ss_pred cCCCceEEE
Q 022268 164 KLFVSSFTL 172 (300)
Q Consensus 164 ragAk~Itl 172 (300)
+.|++-|.+
T Consensus 207 ~~g~~iI~I 215 (285)
T PRK15482 207 KQGATVIAI 215 (285)
T ss_pred HCCCEEEEE
Confidence 888765544
No 82
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=52.18 E-value=1.1e+02 Score=27.03 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=48.3
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCC-CCCeEEEEeecCCc-hhHHHHHHHHHhccc
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGI-RGQHVAFLASFSSP-GKIFEQLSVIYALPK 164 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esV-rG~dV~IIqS~~~p-d~lmELLllidAlrr 164 (300)
..++=...+.-.+|..+|..| |+++.-+.-.+-..|+... ++ ..+ +|++|+||-.+-+- ..+.+ +++++++
T Consensus 60 d~ivg~~~ggi~lA~~lA~~l-~~p~~~~rk~~k~yg~~~~-~~--g~~~~g~~VlIVDDvitTG~Tl~~---~~~~l~~ 132 (176)
T PRK13812 60 TKLAGVALGAVPLVAVTSVET-GVPYVIARKQAKEYGTGNR-IE--GRLDEGEEVVVLEDIATTGQSAVD---AVEALRE 132 (176)
T ss_pred CEEEEeecchHHHHHHHHHHH-CCCEEEEeccCCcCCCCCe-EE--ecCCCcCEEEEEEEeeCCCHHHHH---HHHHHHH
Confidence 333333455678999999999 7887655555555564222 22 344 79999999887543 45554 4556667
Q ss_pred CCCce
Q 022268 165 LFVSS 169 (300)
Q Consensus 165 agAk~ 169 (300)
+|++-
T Consensus 133 ~Ga~v 137 (176)
T PRK13812 133 AGATV 137 (176)
T ss_pred CCCeE
Confidence 88753
No 83
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=52.13 E-value=57 Score=30.08 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=57.8
Q ss_pred HHHHHHHHhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCc
Q 022268 153 FEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTI 232 (300)
Q Consensus 153 mELLllidAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v 232 (300)
-..+-++..+|+..-.-+ .+|-|+.- .+. ....-+.+.+. .+|++-|+..|+|-.+
T Consensus 62 ~~~~~~~~~vr~~~~~pv-~lm~y~n~-----~~~----~G~~~fi~~~~-----~aG~~giiipDl~~ee--------- 117 (242)
T cd04724 62 KDVLELVKEIRKKNTIPI-VLMGYYNP-----ILQ----YGLERFLRDAK-----EAGVDGLIIPDLPPEE--------- 117 (242)
T ss_pred HHHHHHHHHHhhcCCCCE-EEEEecCH-----HHH----hCHHHHHHHHH-----HCCCcEEEECCCCHHH---------
Confidence 356667777776431122 34444320 000 11123455555 3599999999998532
Q ss_pred ccCCcccHHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHh-hCCCccccccccccCC
Q 022268 233 LPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQ-HFPMVLRMPYVDLYCV 290 (300)
Q Consensus 233 ~~l~L~a~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~-~l~~vv~~~~~~~lg~ 290 (300)
...+.+++++. +.+..++++|.. ..+|.+.+++ ..+.+.+|.+....|.
T Consensus 118 -------~~~~~~~~~~~-g~~~i~~i~P~T-~~~~i~~i~~~~~~~vy~~s~~g~tG~ 167 (242)
T cd04724 118 -------AEEFREAAKEY-GLDLIFLVAPTT-PDERIKKIAELASGFIYYVSRTGVTGA 167 (242)
T ss_pred -------HHHHHHHHHHc-CCcEEEEeCCCC-CHHHHHHHHhhCCCCEEEEeCCCCCCC
Confidence 23445555553 445555666665 4566666666 5666666666555554
No 84
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=51.96 E-value=97 Score=28.24 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=51.9
Q ss_pred CCCCcEEEEeCCCCHHHHHHHHHHhCCC-ceeeeEEeeeCC-----CCeeEEeecCCC-CCCCeEEEEeecCCc-hhHHH
Q 022268 83 RTMKKVCLFYCPETHSLAERVAAQSDAI-ELRSINWRKFKD-----GFPNLFIPNAHG-IRGQHVAFLASFSSP-GKIFE 154 (300)
Q Consensus 83 ~~~~~~~Ifsgsss~~LA~~IA~~L~gi-~l~~i~~~rFpD-----GE~Ei~V~i~es-VrG~dV~IIqS~~~p-d~lmE 154 (300)
....+.+|--+.+.--.|.-|+..| ++ ++.-+.+..+.+ ||.+++-.+.-+ ++|++|+||-.+.+- +.|..
T Consensus 27 ~~~PDvIiaiaRGG~~pariLsd~L-~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~ 105 (192)
T COG2236 27 GFKPDVIVAIARGGLIPARILSDFL-GVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVDDIVDTGETLEL 105 (192)
T ss_pred CCCCCEEEEEcCCceehHHHHHHHh-CCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEEecccCchHhHHH
Confidence 4456677777888889999999999 67 677777777766 332233333334 889999999998765 33433
Q ss_pred HHHHHH
Q 022268 155 QLSVIY 160 (300)
Q Consensus 155 LLllid 160 (300)
.+-.+.
T Consensus 106 a~~~l~ 111 (192)
T COG2236 106 ALEELK 111 (192)
T ss_pred HHHHHH
Confidence 333333
No 85
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=51.26 E-value=80 Score=32.77 Aligned_cols=116 Identities=7% Similarity=0.038 Sum_probs=64.9
Q ss_pred eEeecCCCCccccCCCcc-----cccccccccccCCCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEee-eC-----C
Q 022268 54 IDFKSGSEPIHLIQNSTS-----TAATSASESASRTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRK-FK-----D 122 (300)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~r-Fp-----D 122 (300)
.||.--..++|..++.+. .+...+.+.. .-..+++|=.-.+...+|..+|+.+ |+++...-+++ |. -
T Consensus 277 fE~vYfarpdS~~~g~~V~~~R~~~G~~La~~~-~~~~DvVv~VP~sg~~~A~g~A~~l-gip~~~~L~r~~y~grtfi~ 354 (500)
T PRK07349 277 FEMIYFARPDSRMHGESLYSYRQRLGQQLAKES-PVDADLVIGVPDSGIPAAIGFSQAS-GIPYAEGLIKNRYVGRTFIQ 354 (500)
T ss_pred EEeeeccCCCCccCCeEHHHHHHHHHHHHhhhc-ccCCcEEEEeccccHHHHHHHHHHH-CCCchhceEEEeccCccccC
Confidence 455545566677776533 1112222111 1123454433344557899999999 79876433332 22 1
Q ss_pred C---Cee----EEe-ecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCCCceEEEEe
Q 022268 123 G---FPN----LFI-PNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLFVSSFTLVL 174 (300)
Q Consensus 123 G---E~E----i~V-~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrragAk~ItlVI 174 (300)
- .++ .++ .+.+.++|+.|+||-....- ..+.+ ++.+||++||+.|.+-|
T Consensus 355 p~q~~R~~~~~~kl~~~~~~~~gkrVlLVDDvIttGtTl~~---~~~~Lr~aGAkeV~~~i 412 (500)
T PRK07349 355 PTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGTTSRK---IVKALRDAGATEVHMRI 412 (500)
T ss_pred CCHHHHHhhhheeeeccccccCCCEEEEEeceeCCcHHHHH---HHHHHHHhCCeEEEEEe
Confidence 1 001 121 12456789999999665333 34433 56888999999998875
No 86
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=49.31 E-value=1.2e+02 Score=25.69 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHhcccCCCceEEEEeccCCCccccccCCCCC-cccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhccc
Q 022268 150 GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGD-VATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYF 228 (300)
Q Consensus 150 d~lmELLllidAlrragAk~ItlVIPYf~YARQDR~~~~Ge-~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF 228 (300)
+.-.|+|-....+++..-..+++++- |. .-....+.+.+.. .|+|+|+.+|- ++... |
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~-------------G~~~~~~~~l~~~l~~-----~G~d~v~~~~~--~~~~~-~ 73 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVL-------------GPAEEAAEALRKALAK-----YGADKVYHIDD--PALAE-Y 73 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEE-------------ETCCCHHHHHHHHHHS-----TTESEEEEEE---GGGTT-C
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEE-------------ecchhhHHHHhhhhhh-----cCCcEEEEecC--ccccc-c
Confidence 44567877777777754347777751 32 3345556677873 59999999972 11111 1
Q ss_pred CCCcccCCcccHHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCC
Q 022268 229 GDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPM 278 (300)
Q Consensus 229 ~~~v~~l~L~a~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~ 278 (300)
+ .+ .-...|++.+++ ...+.|+++....+..-+-.+|.+|+.
T Consensus 74 ~--~~----~~a~~l~~~~~~--~~~~lVl~~~t~~g~~la~~lA~~L~~ 115 (164)
T PF01012_consen 74 D--PE----AYADALAELIKE--EGPDLVLFGSTSFGRDLAPRLAARLGA 115 (164)
T ss_dssp ---HH----HHHHHHHHHHHH--HT-SEEEEESSHHHHHHHHHHHHHHT-
T ss_pred C--HH----HHHHHHHHHHHh--cCCCEEEEcCcCCCCcHHHHHHHHhCC
Confidence 1 11 125677777776 235688888888888899999977775
No 87
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=48.45 E-value=2e+02 Score=25.62 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHhCCCceeeeEEeeeCCC------------CeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHH
Q 022268 93 CPETHSLAERVAAQSDAIELRSINWRKFKDG------------FPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVI 159 (300)
Q Consensus 93 gsss~~LA~~IA~~L~gi~l~~i~~~rFpDG------------E~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLlli 159 (300)
-.+.-.||..+|..+ +.++......+++.. ..|-.+.+....+|++|+||-.+-.. ..+ .-++
T Consensus 59 e~~Gi~lA~~vA~~l-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~---~~ai 134 (187)
T PRK12560 59 EDKGAPLATPVSLLS-GKPLAMARWYPYSLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTV---IALI 134 (187)
T ss_pred ccccHHHHHHHHHhh-CCCEEEeccCCCcccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHH---HHHH
Confidence 355678999999999 788765543332221 00111333334579999999877544 444 4455
Q ss_pred HhcccCCCceE
Q 022268 160 YALPKLFVSSF 170 (300)
Q Consensus 160 dAlrragAk~I 170 (300)
+.++++|+..+
T Consensus 135 ~ll~~aGa~vv 145 (187)
T PRK12560 135 KAIENSGGIVS 145 (187)
T ss_pred HHHHHCCCEEE
Confidence 77788888643
No 88
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.74 E-value=77 Score=32.03 Aligned_cols=148 Identities=10% Similarity=0.083 Sum_probs=76.2
Q ss_pred HHHHHHHHHhCCCceeeeE--EeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhcccCCCceEEEEec
Q 022268 98 SLAERVAAQSDAIELRSIN--WRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPKLFVSSFTLVLP 175 (300)
Q Consensus 98 ~LA~~IA~~L~gi~l~~i~--~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlrragAk~ItlVIP 175 (300)
-.|-.++..+ |+....+. +..|..- .-+.++-... ..+.+|.... +.+.-.+.-.++.+ .+++.+|+.
T Consensus 326 laAia~~~~l-gi~~~~i~~aL~~f~~~--~gR~e~~~~~--~g~~~idDs~-~tn~~s~~~al~~~----~~~ii~IlG 395 (498)
T PRK02006 326 LAALALARAI-GLPAAPLLHGLREYRGE--PHRVELVATI--DGVDYYDDSK-GTNVGATVAALDGL----AQRVVLIAG 395 (498)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHhhCCCC--CCceEEEEEE--CCEEEEEcCC-CCCHHHHHHHHHhC----CCCEEEEEc
Confidence 3466667777 67654443 4555432 1233321112 2344555432 22333333333333 257888864
Q ss_pred cCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccC---CCcccCCcccHHHHHHHHhcCCC
Q 022268 176 FFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFG---DTILPCFESAIPLLLNRLQQLPD 252 (300)
Q Consensus 176 Yf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~---~~v~~l~L~a~~lL~~~l~~~~~ 252 (300)
-.+.|+.+ ++ +.+.+.. .+++||++..+...+...+. .++.. ........+++.+...
T Consensus 396 ---g~~~~~~~---~~-----~~~~l~~------~~~~vi~~G~~~~~i~~~~~~~~~~~~~--~~~~~eAi~~a~~~~~ 456 (498)
T PRK02006 396 ---GDGKGQDF---SP-----LAAPVAR------HARAVVLIGRDAPAIRAALAGTGVPLVD--AATLEEAVRAAAALAQ 456 (498)
T ss_pred ---CCCCCCCH---HH-----HHHHHHH------hCCEEEEEcCCHHHHHHHHhhCCCceEe--cCCHHHHHHHHHHhcC
Confidence 22222211 12 2444542 36899999887766654442 22221 1234445555544334
Q ss_pred CCCeEEEeCCcccHHHHHHHHh
Q 022268 253 SDNISIAFPDDGAWKRFHKQLQ 274 (300)
Q Consensus 253 ~~n~vIVSPD~GA~kRA~~~A~ 274 (300)
..+.|+++|..++....+.+.+
T Consensus 457 ~gd~VLlsp~~~S~d~f~~~~~ 478 (498)
T PRK02006 457 PGDAVLLSPACASLDMFRNYAH 478 (498)
T ss_pred CCCEEEEChhhcccccccCHHH
Confidence 5689999999999887777764
No 89
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=47.42 E-value=28 Score=30.92 Aligned_cols=39 Identities=8% Similarity=0.059 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCC--CCCeEEEeCCcccHHHHHHHHhhCCC
Q 022268 240 IPLLLNRLQQLPD--SDNISIAFPDDGAWKRFHKQLQHFPM 278 (300)
Q Consensus 240 ~~lL~~~l~~~~~--~~n~vIVSPD~GA~kRA~~~A~~l~~ 278 (300)
...++..|.+... ..+++||+++.||..+|..+++.|+.
T Consensus 18 i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~ 58 (178)
T PRK15423 18 IAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQV 58 (178)
T ss_pred HHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCC
Confidence 4455555544211 34699999999999999999988765
No 90
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=45.71 E-value=37 Score=30.46 Aligned_cols=25 Identities=0% Similarity=-0.267 Sum_probs=21.5
Q ss_pred CCeEEEeCCcccHHHHHHHHhhCCC
Q 022268 254 DNISIAFPDDGAWKRFHKQLQHFPM 278 (300)
Q Consensus 254 ~n~vIVSPD~GA~kRA~~~A~~l~~ 278 (300)
+-.+||+|+.|+...|..+|+.|+.
T Consensus 85 ~~D~Ivgi~~gG~~~A~~lA~~L~~ 109 (200)
T PRK02277 85 EVDVVVGIAKSGVPLATLVADELGK 109 (200)
T ss_pred CCCEEEeeccCCHHHHHHHHHHhCC
Confidence 4468999999999999999977664
No 91
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=45.03 E-value=1.2e+02 Score=27.62 Aligned_cols=70 Identities=16% Similarity=-0.004 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCC-CCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCCCc
Q 022268 94 PETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAH-GIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLFVS 168 (300)
Q Consensus 94 sss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~e-sVrG~dV~IIqS~~~p-d~lmELLllidAlrragAk 168 (300)
...-.+|..+|..+ ++++....-..--.|+ +-.+++.. ..+|++|+||-.+-.- ..+.| .+++++++|++
T Consensus 76 ~~Gi~~A~~vA~~l-~~p~~~~RK~~K~~G~-~~~~~~~g~~~~g~~VlIVDDViTTG~Ti~~---a~~~L~~~G~~ 147 (206)
T PRK13809 76 YTALTLATSISLKY-NIPMVLRRKELKNVDP-SDAIKVEGLFTPGQTCLVINDMVSSGKSIIE---TAVALEEEGLV 147 (206)
T ss_pred CccHHHHHHHHHHh-CCCEEEEeCCCCCCCC-cCEEEEccccCCCCEEEEEEeccccCHHHHH---HHHHHHHCCCE
Confidence 33568999999999 7887765543333454 23343332 3578999999876443 45554 44556677875
No 92
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=44.45 E-value=95 Score=31.94 Aligned_cols=118 Identities=10% Similarity=0.025 Sum_probs=66.1
Q ss_pred eeEeecCCCCccccCCCcc---cc--cccccccccCCCCcEEEEeCCCCHHHHHHHHHHhCCCceeee-EEeee-----C
Q 022268 53 SIDFKSGSEPIHLIQNSTS---TA--ATSASESASRTMKKVCLFYCPETHSLAERVAAQSDAIELRSI-NWRKF-----K 121 (300)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i-~~~rF-----p 121 (300)
..||.=-..++|..++.+. .. .-.+.+... ...++++-.-.+...+|..+|+.+ |+++... ...++ .
T Consensus 247 ~fE~vYfarpds~~~g~~vy~~R~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~-gip~~~~lik~~~~~rt~~ 324 (471)
T PRK06781 247 SMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEAT-GIPYELGLIKNRYVGRTFI 324 (471)
T ss_pred eEEEEEecCCCceeCCEEHHHHHHHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHh-CCCcccceEEEccCCCCCc
Confidence 3455555556666665532 11 122222111 124454433445567899999999 7887542 22222 1
Q ss_pred --CC-Cee--E--Eee-cCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCCCceEEEEec
Q 022268 122 --DG-FPN--L--FIP-NAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLFVSSFTLVLP 175 (300)
Q Consensus 122 --DG-E~E--i--~V~-i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrragAk~ItlVIP 175 (300)
+. |++ + ++. +.+.++|+.|++|-....- ..+- -++.+||++||++|.+.|-
T Consensus 325 ~~~~~~R~~~v~~~f~~~~~~i~gk~VlLVDDvittGtTl~---~~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 325 QPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTSK---RIVRMLREAGATEVHVRIA 384 (471)
T ss_pred CCCHHHHHHHHhcceeccccccCCceEEEEeceeccchHHH---HHHHHHHHcCCcEEEEEEC
Confidence 11 111 1 122 2456889999999665332 3333 3677889999999999884
No 93
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=44.44 E-value=1.1e+02 Score=31.61 Aligned_cols=117 Identities=9% Similarity=0.009 Sum_probs=64.5
Q ss_pred eEeecCCCCccccCCCcc---c--ccccccccccCCCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEe-e-----eCC
Q 022268 54 IDFKSGSEPIHLIQNSTS---T--AATSASESASRTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWR-K-----FKD 122 (300)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~-r-----FpD 122 (300)
.||.=-..++|..++.+. . +--.+++.... ..++++---.+...+|..+|+.+ |+++...-++ + |..
T Consensus 248 fE~iYfarpdS~~~g~~vy~~R~~~G~~La~~~~~-~~D~VvpVP~s~~~~A~gla~~~-gip~~~~lik~~~~~Rt~i~ 325 (475)
T PRK07631 248 MEYIYFARPDSNVDGINVHTARKNLGKRLALEAPV-EADVVTGVPDSSISAAIGYAEAT-GIPYELGLIKNRYVGRTFIQ 325 (475)
T ss_pred EEEEEeecCCcccCCeEHHHHHHHHHHHHHhhCCC-CCcEEEEechhHHHHHHHHHHHH-CCCcccceEEEecCCCCCcC
Confidence 444444455566665532 1 11223321111 23444433344556899999999 7887542222 2 322
Q ss_pred C---CeeE----Eee-cCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCCCceEEEEec
Q 022268 123 G---FPNL----FIP-NAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLFVSSFTLVLP 175 (300)
Q Consensus 123 G---E~Ei----~V~-i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrragAk~ItlVIP 175 (300)
- +++. .+. +.+.++|+.|++|.....- ..+- -++.+|+++||++|.+.+-
T Consensus 326 ~~~~~R~~nv~~~f~~~~~~v~gk~VlLVDDsittGtTl~---~~~~~L~~aGA~eV~v~~~ 384 (475)
T PRK07631 326 PSQALREQGVKMKLSPVRGVVEGKRVVMVDDSIVRGTTSR---RIVTMLREAGATEVHVRIS 384 (475)
T ss_pred CCHHHHHHHHhhhhhhcccccCCceEEEEeeeeccHHHHH---HHHHHHHHcCCCEEEEEEe
Confidence 2 1111 111 1356889999999665433 3343 4568899999999998874
No 94
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=44.25 E-value=59 Score=25.67 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=45.8
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhcccC
Q 022268 86 KKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPKL 165 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlrra 165 (300)
+.+.+++...+..+|...+..|. .++. .....++.+ +..... ..+...|++|+-|..... .+++.+++.+++.
T Consensus 14 ~~i~i~g~g~s~~~a~~~~~~l~--~~~~-~~~~~~~~~-~~~~~~-~~~~~~~~~i~iS~~g~~--~~~~~~~~~a~~~ 86 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYKLL--RLGK-PVVLLSDPH-LQLMSA-ANLTPGDVVIAISFSGET--KETVEAAEIAKER 86 (139)
T ss_pred CEEEEEEcCchHHHHHHHHHHHH--HcCC-ceEEecCHH-HHHHHH-HcCCCCCEEEEEeCCCCC--HHHHHHHHHHHHc
Confidence 56777776667788998888882 4444 334455653 222221 233446777777765432 3445555778888
Q ss_pred CCce
Q 022268 166 FVSS 169 (300)
Q Consensus 166 gAk~ 169 (300)
|++-
T Consensus 87 g~~i 90 (139)
T cd05013 87 GAKV 90 (139)
T ss_pred CCeE
Confidence 8754
No 95
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=44.14 E-value=49 Score=26.85 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=42.3
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhcccCCC
Q 022268 88 VCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPKLFV 167 (300)
Q Consensus 88 ~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlrragA 167 (300)
+.+++.-++...|......+ .++......-+.+.| ..-.....+...|++|+=|.+.. --|++-.++.+|+.|+
T Consensus 2 I~i~G~G~S~~~A~~~~~~l--~~~~~~~~~~~~~~~--~~~~~~~~~~~~dl~I~iS~SG~--t~~~~~~~~~a~~~g~ 75 (120)
T cd05710 2 VFFVGCGGSLADMYPAKYFL--KKESKLPVFVYNAAE--FLHTGPKRLTEKSVVILASHSGN--TKETVAAAKFAKEKGA 75 (120)
T ss_pred EEEEEecHHHHHHhHHHHHH--HHhcCCceEEEcHHH--HhhcCcccCCCCcEEEEEeCCCC--ChHHHHHHHHHHHcCC
Confidence 34554444555566665555 244455556666663 32222234555788887776543 2344455566777787
Q ss_pred ceEE
Q 022268 168 SSFT 171 (300)
Q Consensus 168 k~It 171 (300)
+-|.
T Consensus 76 ~vi~ 79 (120)
T cd05710 76 TVIG 79 (120)
T ss_pred eEEE
Confidence 5443
No 96
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=43.72 E-value=38 Score=30.41 Aligned_cols=32 Identities=6% Similarity=-0.138 Sum_probs=23.7
Q ss_pred CCeEEEeCCcccHHHHHHHHhhCC--Cccccccc
Q 022268 254 DNISIAFPDDGAWKRFHKQLQHFP--MVLRMPYV 285 (300)
Q Consensus 254 ~n~vIVSPD~GA~kRA~~~A~~l~--~vv~~~~~ 285 (300)
+-.+|++|+.++.--|..+|..++ .+++++..
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~~ 83 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFAKKKK 83 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEEECC
Confidence 446899999999999999996543 34444443
No 97
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=43.59 E-value=37 Score=30.51 Aligned_cols=37 Identities=5% Similarity=-0.108 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCC-CCCCeEEEeCCcccHHHHHHHHhhC
Q 022268 240 IPLLLNRLQQLP-DSDNISIAFPDDGAWKRFHKQLQHF 276 (300)
Q Consensus 240 ~~lL~~~l~~~~-~~~n~vIVSPD~GA~kRA~~~A~~l 276 (300)
...+++.+.+.. +.+-.+|++|+.++.--|..+|..|
T Consensus 35 l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~L 72 (191)
T TIGR01744 35 MQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKL 72 (191)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHH
Confidence 344444443321 3344688999999999999999544
No 98
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=43.13 E-value=1e+02 Score=30.55 Aligned_cols=66 Identities=9% Similarity=-0.078 Sum_probs=44.3
Q ss_pred CCeEEEEeecCCchhHHHHHHHHHhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEE
Q 022268 137 GQHVAFLASFSSPGKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVT 216 (300)
Q Consensus 137 G~dV~IIqS~~~pd~lmELLllidAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVIt 216 (300)
|.|+.||...+.-...+ -.++.|+..|. ++.++=+-+-| |+..+.+.++++ ++++|++
T Consensus 273 ~ad~~iv~~Gs~~~~a~---eAv~~Lr~~G~-~v~~l~~~~l~-----------Pfp~~~i~~~~~-------~~k~Viv 330 (376)
T PRK08659 273 DAEVVVVAYGSVARSAR---RAVKEAREEGI-KVGLFRLITVW-----------PFPEEAIRELAK-------KVKAIVV 330 (376)
T ss_pred CCCEEEEEeCccHHHHH---HHHHHHHhcCC-ceEEEEeCeec-----------CCCHHHHHHHHh-------cCCEEEE
Confidence 57788886654333333 34455566675 46665544333 788888999998 7899999
Q ss_pred ecCChhhh
Q 022268 217 FDIHALQE 224 (300)
Q Consensus 217 vDlHs~qi 224 (300)
+|-|..++
T Consensus 331 vEe~~g~l 338 (376)
T PRK08659 331 PEMNLGQM 338 (376)
T ss_pred EeCCHHHH
Confidence 99985433
No 99
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=42.96 E-value=1.3e+02 Score=31.88 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=50.6
Q ss_pred CCeEEEEeecCCchhHHHHHHHHHhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEE
Q 022268 137 GQHVAFLASFSSPGKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVT 216 (300)
Q Consensus 137 G~dV~IIqS~~~pd~lmELLllidAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVIt 216 (300)
++.+.|+.. ++-|-+---.++..+|++.|+..+..+|| || +.+|=-++...+-++.+ .|++-|||
T Consensus 69 ~e~I~I~gD-yD~DGitstail~~~L~~~g~~~~~~~IP-------~R-~~eGYGl~~~~i~~~~~------~~~~LiIt 133 (575)
T PRK11070 69 GTRIIVVGD-FDADGATSTALSVLALRSLGCSNVDYLVP-------NR-FEDGYGLSPEVVDQAHA------RGAQLIVT 133 (575)
T ss_pred CCEEEEEEe-cCccHHHHHHHHHHHHHHcCCCceEEEeC-------CC-CcCCCCCCHHHHHHHHh------cCCCEEEE
Confidence 345555533 55577888888999999999977777776 22 34455677766666665 27888999
Q ss_pred ecCChhhh
Q 022268 217 FDIHALQE 224 (300)
Q Consensus 217 vDlHs~qi 224 (300)
+|.-+...
T Consensus 134 vD~Gi~~~ 141 (575)
T PRK11070 134 VDNGISSH 141 (575)
T ss_pred EcCCcCCH
Confidence 98776543
No 100
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=42.87 E-value=69 Score=26.12 Aligned_cols=81 Identities=10% Similarity=-0.108 Sum_probs=50.3
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhccc
Q 022268 85 MKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPK 164 (300)
Q Consensus 85 ~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlrr 164 (300)
.+.+.+++.-.+...|...+.++ .+.+.+...-+.++| ..---...+..++++|+-+..+ ..--++.-++..+++
T Consensus 13 ~~~i~~~G~G~s~~~a~e~~~kl--~e~~~i~~~~~~~~e--~~hg~~~~~~~~~~vi~is~~g-~t~~~~~~~~~~~~~ 87 (153)
T cd05009 13 AKSFYVLGRGPNYGTALEGALKL--KETSYIHAEAYSAGE--FKHGPIALVDEGTPVIFLAPED-RLEEKLESLIKEVKA 87 (153)
T ss_pred cCcEEEEcCCCCHHHHHHHHHHH--HHHHhhcceeccHHH--hccChhhhccCCCcEEEEecCC-hhHHHHHHHHHHHHH
Confidence 46677776555778888888888 467667777788774 4333334455566666655332 222335556677888
Q ss_pred CCCceE
Q 022268 165 LFVSSF 170 (300)
Q Consensus 165 agAk~I 170 (300)
.|++-+
T Consensus 88 ~~~~vi 93 (153)
T cd05009 88 RGAKVI 93 (153)
T ss_pred cCCEEE
Confidence 776443
No 101
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=42.52 E-value=72 Score=28.99 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=46.5
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhcccCC
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPKLF 166 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlrrag 166 (300)
++.+++.-++..+|+..+.+| ..++.. ..-+.|. +........+...|++|+-|.+.. --|++.++..+|+.|
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l--~~~g~~-~~~~~~~--~~~~~~~~~~~~~d~~i~iS~sG~--t~~~~~~~~~a~~~g 74 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATF--ASTGTP-SFFLHPT--EAMHGDLGMVEPNDVVLMISYSGE--SLELLNLIPHLKRLS 74 (268)
T ss_pred cEEEEecChHHHHHHHHHHHH--HhcCCc-eEEeCHh--HHhhcccCCCCCCCEEEEEeCCCC--CHHHHHHHHHHHHcC
Confidence 456776566778899988887 244433 2234555 333332345666788888787643 234445566777778
Q ss_pred CceEE
Q 022268 167 VSSFT 171 (300)
Q Consensus 167 Ak~It 171 (300)
++-|.
T Consensus 75 ~~ii~ 79 (268)
T TIGR00393 75 HKIIA 79 (268)
T ss_pred CcEEE
Confidence 76543
No 102
>PRK08105 flavodoxin; Provisional
Probab=42.23 E-value=1.7e+02 Score=24.86 Aligned_cols=112 Identities=12% Similarity=0.060 Sum_probs=55.4
Q ss_pred CCcEEEEeCCC---CHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecC----CchhHHHHHH
Q 022268 85 MKKVCLFYCPE---THSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFS----SPGKIFEQLS 157 (300)
Q Consensus 85 ~~~~~Ifsgss---s~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~----~pd~lmELLl 157 (300)
|+++.||.||. +..+|++|++.| .-.-.++.+..-.|- . .+ +......|+++.|++ .|++..+++.
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l-~~~g~~~~~~~~~~~----~-~~-~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~ 73 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAIL-TAQGHEVTLFEDPEL----S-DW-QPYQDELVLVVTSTTGQGDLPDSIVPLFQ 73 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHH-HhCCCceEEechhhC----C-ch-hcccCCeEEEEECCCCCCCCChhHHHHHH
Confidence 34688888876 457899999888 311112222221111 0 11 111235677788886 3477666654
Q ss_pred HHHhc-ccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEE
Q 022268 158 VIYAL-PKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLV 215 (300)
Q Consensus 158 lidAl-rragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVI 215 (300)
-+... ....-.++.+ + + =-|+.. +.=.-.++.+.+.|+.+ |+++|.
T Consensus 74 ~l~~~~~~l~~~~~av-f---G--lGds~Y-~~fc~~~~~ld~~l~~l-----Ga~~v~ 120 (149)
T PRK08105 74 ALKDTAGYQPNLRYGV-I---A--LGDSSY-DNFCGAGKQFDALLQEQ-----GAKRVG 120 (149)
T ss_pred HHHhcCcccCCCEEEE-E---e--eecCCH-HHHHHHHHHHHHHHHHC-----CCeEee
Confidence 44321 1122223222 1 1 112211 11133567777888855 888875
No 103
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=41.12 E-value=47 Score=30.61 Aligned_cols=82 Identities=9% Similarity=0.069 Sum_probs=51.4
Q ss_pred CCCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHh
Q 022268 83 RTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYA 161 (300)
Q Consensus 83 ~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidA 161 (300)
.+.+++.+++...+..+|+.++..|. .++.-.. -..|. +........+..+||+|+=|.... .++++ ++.-
T Consensus 126 ~~a~~I~i~G~G~s~~~A~~~~~~l~--~~g~~~~-~~~d~--~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~---~~~~ 197 (278)
T PRK11557 126 RSARRIILTGIGASGLVAQNFAWKLM--KIGINAV-AERDM--HALLATVQALSPDDLLLAISYSGERRELNL---AADE 197 (278)
T ss_pred hcCCeEEEEecChhHHHHHHHHHHHh--hCCCeEE-EcCCh--HHHHHHHHhCCCCCEEEEEcCCCCCHHHHH---HHHH
Confidence 34567888887788899999999882 4443322 23444 222222234556889888887644 44444 5567
Q ss_pred cccCCCceEEE
Q 022268 162 LPKLFVSSFTL 172 (300)
Q Consensus 162 lrragAk~Itl 172 (300)
+|+.|++-|.+
T Consensus 198 ak~~ga~iI~I 208 (278)
T PRK11557 198 ALRVGAKVLAI 208 (278)
T ss_pred HHHcCCCEEEE
Confidence 78888866555
No 104
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=40.66 E-value=35 Score=34.61 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=20.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHhhCCC
Q 022268 253 SDNISIAFPDDGAWKRFHKQLQHFPM 278 (300)
Q Consensus 253 ~~n~vIVSPD~GA~kRA~~~A~~l~~ 278 (300)
..++||+.||.| ..+|+.+|+.++.
T Consensus 275 ~~d~Vv~vPd~g-~~~A~~~A~~lgi 299 (445)
T PRK08525 275 KADFVVPVPDSG-VPAAIGYAQESGI 299 (445)
T ss_pred cCCeEEECCchH-HHHHHHHHHHhCC
Confidence 357999999966 8999999977654
No 105
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=40.62 E-value=39 Score=26.76 Aligned_cols=38 Identities=11% Similarity=-0.043 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCC
Q 022268 240 IPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPM 278 (300)
Q Consensus 240 ~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~ 278 (300)
...++++|.+. ..+..+||++..||.-.|..+++.|+.
T Consensus 14 ~~~la~~i~~~-~~~~~~ivgi~~~G~~~a~~la~~l~~ 51 (125)
T PF00156_consen 14 AERLAEQIKES-GFDFDVIVGIPRGGIPLAAALARALGI 51 (125)
T ss_dssp HHHHHHHHHHH-TTTSSEEEEETTTTHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHh-CCCCCEEEeehhccHHHHHHHHHHhCC
Confidence 45677777664 334456999999999999999976664
No 106
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=39.28 E-value=58 Score=30.30 Aligned_cols=82 Identities=11% Similarity=0.156 Sum_probs=50.2
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhcc
Q 022268 84 TMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALP 163 (300)
Q Consensus 84 ~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlr 163 (300)
..+.+.+++..++..+|+.++.+|. .++ ....-++|. +........+...|++|+=|...... |++-++..++
T Consensus 139 ~A~~I~i~G~G~S~~~A~~l~~~l~--~~g-~~~~~~~d~--~~~~~~~~~~~~~Dl~I~iS~sG~t~--~~~~~~~~ak 211 (292)
T PRK11337 139 QARQRDLYGAGGSAAIARDVQHKFL--RIG-VRCQAYDDA--HIMLMSAALLQEGDVVLVVSHSGRTS--DVIEAVELAK 211 (292)
T ss_pred cCCeEEEEEecHHHHHHHHHHHHHh--hCC-CeEEEcCCH--HHHHHHHhcCCCCCEEEEEeCCCCCH--HHHHHHHHHH
Confidence 3456777776677888999988882 343 233445665 22221122355688888888765421 3555677788
Q ss_pred cCCCceEEE
Q 022268 164 KLFVSSFTL 172 (300)
Q Consensus 164 ragAk~Itl 172 (300)
+.|++-|.+
T Consensus 212 ~~g~~ii~I 220 (292)
T PRK11337 212 KNGAKIICI 220 (292)
T ss_pred HCCCeEEEE
Confidence 888765444
No 107
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=38.97 E-value=1.5e+02 Score=30.97 Aligned_cols=117 Identities=9% Similarity=0.063 Sum_probs=63.7
Q ss_pred eEeecCCCCccccCCCcc---ccc--ccccccccCCCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEee------e--
Q 022268 54 IDFKSGSEPIHLIQNSTS---TAA--TSASESASRTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRK------F-- 120 (300)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~r------F-- 120 (300)
.||.=-..++|..++.+. ... -.+.+-.+ -..++++-.-.+.-..|..+|+.+ |+++...-.+. |
T Consensus 267 fE~vYfarpdS~~~g~~v~~~R~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~-gip~~~~l~kn~~~grtfi~ 344 (510)
T PRK07847 267 FEYVYLARPDTTIAGRSVHAARVEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQES-GIPFGQGLVKNAYVGRTFIQ 344 (510)
T ss_pred EEEEEecCCcceeCCeEHHHHHHHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHh-CCChhhceEeecccccCccC
Confidence 455545556666665533 111 22221111 123343322334467799999999 78875432221 1
Q ss_pred CC-CCe--eEEeec---CCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCCCceEEEEec
Q 022268 121 KD-GFP--NLFIPN---AHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLFVSSFTLVLP 175 (300)
Q Consensus 121 pD-GE~--Ei~V~i---~esVrG~dV~IIqS~~~p-d~lmELLllidAlrragAk~ItlVIP 175 (300)
|. .++ .+++++ .+.+.|+.|+||.....- ..+- .++.+|+++||++|.+-|-
T Consensus 345 ~~q~~r~~~~r~k~~~~~~~~~gk~vllVDD~ittG~T~~---~~~~~L~~~ga~~v~~ri~ 403 (510)
T PRK07847 345 PSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVRGNTQR---ALVRMLREAGAAEVHVRIS 403 (510)
T ss_pred cchhhhhhceeeecCccccccCCCEEEEEecccCchHHHH---HHHHHHHHcCCCEEEEEEC
Confidence 11 111 123332 345789999999665433 3333 5678889999999998874
No 108
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=38.42 E-value=1.3e+02 Score=27.54 Aligned_cols=71 Identities=20% Similarity=0.110 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHhCCCceeeeEEeeeCCCCee-----EEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCCC
Q 022268 94 PETHSLAERVAAQSDAIELRSINWRKFKDGFPN-----LFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLFV 167 (300)
Q Consensus 94 sss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~E-----i~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrragA 167 (300)
.+.-.||.-+|..| |.++.-..-+++-.-| + ..=+.=.+|.||+++||..+-.. ..++|. +..+++.|+
T Consensus 95 ~sGvPlAtmvA~el-g~elaiY~PrK~~~de-~~~~~G~iS~NFa~V~gK~cvIVDDvittG~Ti~E~---Ie~lke~g~ 169 (203)
T COG0856 95 ISGVPLATMVAYEL-GKELAIYHPRKHRKDE-GAGKGGSISSNFASVEGKRCVIVDDVITTGSTIKET---IEQLKEEGG 169 (203)
T ss_pred ecCccHHHHHHHHh-CCceEEEecccccccc-cCCcCceeecccccccCceEEEEecccccChhHHHH---HHHHHHcCC
Confidence 45568999999999 7887766655554432 1 11122247889999999887544 678874 567888888
Q ss_pred ce
Q 022268 168 SS 169 (300)
Q Consensus 168 k~ 169 (300)
+-
T Consensus 170 kp 171 (203)
T COG0856 170 KP 171 (203)
T ss_pred Cc
Confidence 63
No 109
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=37.70 E-value=98 Score=27.07 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=38.7
Q ss_pred CeEEEEeecCCchhHHHHHHHHHhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEe
Q 022268 138 QHVAFLASFSSPGKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTF 217 (300)
Q Consensus 138 ~dV~IIqS~~~pd~lmELLllidAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItv 217 (300)
-||+.+.++.. .+.-..--++++||+.|+..|.++. |-.|+-..+-++-+ +|+++|++-
T Consensus 64 v~vIgvSsl~g-~h~~l~~~lve~lre~G~~~i~v~~--------------GGvip~~d~~~l~~------~G~~~if~p 122 (143)
T COG2185 64 VDVIGVSSLDG-GHLTLVPGLVEALREAGVEDILVVV--------------GGVIPPGDYQELKE------MGVDRIFGP 122 (143)
T ss_pred CCEEEEEeccc-hHHHHHHHHHHHHHHhCCcceEEee--------------cCccCchhHHHHHH------hCcceeeCC
Confidence 47888877753 3444556788999999999998432 33343333333433 488888776
Q ss_pred c
Q 022268 218 D 218 (300)
Q Consensus 218 D 218 (300)
.
T Consensus 123 g 123 (143)
T COG2185 123 G 123 (143)
T ss_pred C
Confidence 3
No 110
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=37.23 E-value=1.3e+02 Score=31.13 Aligned_cols=157 Identities=12% Similarity=0.115 Sum_probs=86.5
Q ss_pred eeeEeecCCCCccccCCCcc---c--ccccccccccCCCCcEEEEeCCCCHHHHHHHHHHhCCCceeee-EEeee-----
Q 022268 52 WSIDFKSGSEPIHLIQNSTS---T--AATSASESASRTMKKVCLFYCPETHSLAERVAAQSDAIELRSI-NWRKF----- 120 (300)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i-~~~rF----- 120 (300)
-..||.----++|.+++-+. . |--.+.+-.... .+++|=--.+....|--.|+.+ |+++..- --.+|
T Consensus 246 C~fEyVYFARPDS~Idg~sVy~~R~~mG~~La~e~~~e-aDvVipVPDSg~~aAig~A~~s-GiPy~~GliKNrYvgRTF 323 (470)
T COG0034 246 CSFEYVYFARPDSVIDGISVYEARKRMGEKLAEEIPVE-ADVVIPVPDSGRPAAIGYARAS-GIPYEEGLIKNRYVGRTF 323 (470)
T ss_pred ceEEEEEeecCccccCCeeHHHHHHHHHHHHHHhCCcc-ccEEEecCCCChHHHHHHHHHh-CCchhhccccccccceee
Confidence 34666666677788886533 2 223333211111 2566555677788899999999 7875422 11222
Q ss_pred --CCC-CeeEEeec-----CCCCCCCeEEEEee-cCCchhHHHHHHHHHhcccCCCceEEEEec--------cCCCcccc
Q 022268 121 --KDG-FPNLFIPN-----AHGIRGQHVAFLAS-FSSPGKIFEQLSVIYALPKLFVSSFTLVLP--------FFPTGTSE 183 (300)
Q Consensus 121 --pDG-E~Ei~V~i-----~esVrG~dV~IIqS-~~~pd~lmELLllidAlrragAk~ItlVIP--------Yf~YARQD 183 (300)
|.. ++|..|+. .+.|+||.|++|.. +..-.. .-.+++.+|++||+.|++-|- ||+---++
T Consensus 324 I~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDDSIVRGTT---sr~IV~mlReAGAkEVHvriasP~i~~Pc~YGID~pt 400 (470)
T COG0034 324 IMPTQELREKGVRLKLNPVREVVKGKRVVLVDDSIVRGTT---SRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPT 400 (470)
T ss_pred eCCcHHHHHhhhhhhcCchHHHhCCCeEEEEccccccCcc---HHHHHHHHHHhCCCEEEEEecCCCccCCCccccCCCC
Confidence 222 12222332 36788999999843 322211 123445567999999988762 56665555
Q ss_pred ccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCCh
Q 022268 184 RMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHA 221 (300)
Q Consensus 184 R~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs 221 (300)
|...-..-.+...+++.| |+|.+.-+++-.
T Consensus 401 ~~eLIA~~~~~eeI~~~I--------gaDSL~yLsleg 430 (470)
T COG0034 401 REELIAANRTVEEIRKAI--------GADSLAYLSLEG 430 (470)
T ss_pred HHHHhhCCCCHHHHHHHh--------CCCceeeecHHH
Confidence 543211112244455544 478888777643
No 111
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=36.18 E-value=2e+02 Score=29.66 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHhCCCceeeeEE------eeeC--CCC-ee--EEeec---CCCCCCCeEEEEeecCCchhHHHHHHHHHh
Q 022268 96 THSLAERVAAQSDAIELRSINW------RKFK--DGF-PN--LFIPN---AHGIRGQHVAFLASFSSPGKIFEQLSVIYA 161 (300)
Q Consensus 96 s~~LA~~IA~~L~gi~l~~i~~------~rFp--DGE-~E--i~V~i---~esVrG~dV~IIqS~~~pd~lmELLllidA 161 (300)
....|..+|+.+ |+++...-+ ++|- ..+ ++ .++++ .+.+.|++|+||-....--.-+. -++++
T Consensus 302 ~~~~A~g~a~~~-gip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~gk~VlLVDDsittGtTl~--~~~~~ 378 (474)
T PRK06388 302 GRSQAIGFSMAS-GIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSIVRGNTMR--FIVKI 378 (474)
T ss_pred cHHHHHHHHHHh-CCCchhheEEecccCCcccCCchhhhhhceeEEeccccccccCceEEEEeCeECcHHHHH--HHHHH
Confidence 346699999999 788643211 2221 211 11 23332 23567899999976543322222 46778
Q ss_pred cccCCCceEEEEec
Q 022268 162 LPKLFVSSFTLVLP 175 (300)
Q Consensus 162 lrragAk~ItlVIP 175 (300)
|+++||+.|.+.|-
T Consensus 379 L~~aGak~V~~ri~ 392 (474)
T PRK06388 379 MRKYGAKEVHVRIG 392 (474)
T ss_pred HHHcCCCEEEEEeC
Confidence 89999999998874
No 112
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=36.08 E-value=1.1e+02 Score=23.24 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=24.8
Q ss_pred EEeecCCchhHHHHHHHHHhcccCCCceEEEEecc
Q 022268 142 FLASFSSPGKIFEQLSVIYALPKLFVSSFTLVLPF 176 (300)
Q Consensus 142 IIqS~~~pd~lmELLllidAlrragAk~ItlVIPY 176 (300)
+.+.+...+.|-++.-.++.....+....+++-||
T Consensus 17 i~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~ 51 (80)
T smart00166 17 LVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPF 51 (80)
T ss_pred EEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCC
Confidence 34455656778888888877776666678887765
No 113
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=34.80 E-value=85 Score=27.22 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=49.5
Q ss_pred CCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCCcccCCcccHHHHHHHHhcCCCCCCeEEEeCC------
Q 022268 189 GDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPD------ 262 (300)
Q Consensus 189 Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~~~l~~~~~~~n~vIVSPD------ 262 (300)
....+...-.++|+.+ |+|.++.+| |+..+.. +++...+.++|.+. ..-..+||..|
T Consensus 59 ~~l~s~~ek~~~l~~~-----Gvd~~~~~~---------F~~~~~~--ls~~~Fi~~iL~~~-l~~~~ivvG~DfrFG~~ 121 (157)
T PF06574_consen 59 KLLTSLEEKLELLESL-----GVDYVIVIP---------FTEEFAN--LSPEDFIEKILKEK-LNVKHIVVGEDFRFGKN 121 (157)
T ss_dssp GBSS-HHHHHHHHHHT-----TESEEEEE----------CCCHHCC--S-HHHHHHHHCCCH-CTEEEEEEETT-EESGG
T ss_pred cCCCCHHHHHHHHHHc-----CCCEEEEec---------chHHHHc--CCHHHHHHHHHHhc-CCccEEEEccCccCCCC
Confidence 3467788888999975 999999998 7755553 46666666666632 23456899999
Q ss_pred -cccHHHHHHHHhhCC
Q 022268 263 -DGAWKRFHKQLQHFP 277 (300)
Q Consensus 263 -~GA~kRA~~~A~~l~ 277 (300)
.|..+--+.+++.++
T Consensus 122 ~~G~~~~L~~~~~~~g 137 (157)
T PF06574_consen 122 RSGDVELLKELGKEYG 137 (157)
T ss_dssp GEEEHHHHHHCTTTT-
T ss_pred CCCCHHHHHHhcccCc
Confidence 888888888886543
No 114
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=33.14 E-value=3.3e+02 Score=23.80 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=53.0
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeee--CCC------------CeeEEee---cCCCCCCCeEEEEeecCCc
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKF--KDG------------FPNLFIP---NAHGIRGQHVAFLASFSSP 149 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rF--pDG------------E~Ei~V~---i~esVrG~dV~IIqS~~~p 149 (300)
+.++=...+.-.+|..+|..| +.++.-+...+- .++ +.+.... ....++|++|+||-.+..-
T Consensus 54 d~Iv~v~~gGiplA~~lA~~L-~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT 132 (178)
T PRK07322 54 DVLVTPETKGIPLAHALSRRL-GKPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVST 132 (178)
T ss_pred CEEEEeccCCHHHHHHHHHHH-CCCEEEEEEeCCCCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccc
Confidence 333333455778999999999 788654322221 112 1011111 0124689999999887655
Q ss_pred -hhHHHHHHHHHhcccCCCceEEEEeccCCCccccc
Q 022268 150 -GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSER 184 (300)
Q Consensus 150 -d~lmELLllidAlrragAk~ItlVIPYf~YARQDR 184 (300)
..+. -+++.++++||+.+ .++=.+.|+.++-
T Consensus 133 G~Tl~---aa~~~L~~~GA~~V-~~~~v~~~~~~~~ 164 (178)
T PRK07322 133 GGTLT---ALERLVERAGGQVV-AKAAIFAEGDASN 164 (178)
T ss_pred cHHHH---HHHHHHHHcCCEEE-EEEEEEEcCCCCC
Confidence 4444 34455688898654 4445566666543
No 115
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=33.13 E-value=2.9e+02 Score=23.15 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=23.2
Q ss_pred CcEEEEeCCC---CHHHHHHHHHHhCCCceeeeEEeeeC
Q 022268 86 KKVCLFYCPE---THSLAERVAAQSDAIELRSINWRKFK 121 (300)
Q Consensus 86 ~~~~Ifsgss---s~~LA~~IA~~L~gi~l~~i~~~rFp 121 (300)
.++.||.+|. +..+|+.|++.| +....++.+..-+
T Consensus 2 ~ki~Ivy~S~tGnTe~vA~~i~~~l-~~~~~~~~~~~~~ 39 (151)
T COG0716 2 MKILIVYGSRTGNTEKVAEIIAEEL-GADGFEVDIDIRP 39 (151)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHh-ccCCceEEEeecC
Confidence 4566666654 458899999999 6665555444444
No 116
>PRK11595 DNA utilization protein GntX; Provisional
Probab=33.06 E-value=1.9e+02 Score=26.30 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCCceee--eEEeee------CCCC-ee--E--EeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcc
Q 022268 98 SLAERVAAQSDAIELRS--INWRKF------KDGF-PN--L--FIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALP 163 (300)
Q Consensus 98 ~LA~~IA~~L~gi~l~~--i~~~rF------pDGE-~E--i--~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlr 163 (300)
.||+.+++.+ ++++.. +...+. -+.+ +. + .+.+..++.|++|+||-.+.+- ..+.+ ++++|+
T Consensus 136 ~la~~la~~~-~~~~~~~~l~r~~~~~~q~~l~~~~R~~n~~~~f~~~~~~~~~~vllvDDv~tTG~Tl~~---~~~~L~ 211 (227)
T PRK11595 136 LLCRPLARWL-GCDYDSEALTRTRATATQHFLSARLRKRNLKNAFRLELPVQGQHMAIVDDVVTTGSTVAE---IAQLLL 211 (227)
T ss_pred HHHHHHHHHH-CCCCcccceEEecCCCCcccCCHHHHhhhhhhhhccCCCCCCCEEEEEeeeecchHHHHH---HHHHHH
Confidence 6799999999 676532 111111 0110 00 0 1223356889999999887654 34444 456778
Q ss_pred cCCCceEEEE
Q 022268 164 KLFVSSFTLV 173 (300)
Q Consensus 164 ragAk~ItlV 173 (300)
++|+++|.++
T Consensus 212 ~~g~~~V~~~ 221 (227)
T PRK11595 212 RNGAASVQVW 221 (227)
T ss_pred HcCCcEEEEE
Confidence 8999888664
No 117
>PRK09004 FMN-binding protein MioC; Provisional
Probab=30.81 E-value=2.3e+02 Score=23.96 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=53.5
Q ss_pred CCcEEEEeCCC---CHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCe-EEEEeecC----CchhHHHHH
Q 022268 85 MKKVCLFYCPE---THSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQH-VAFLASFS----SPGKIFEQL 156 (300)
Q Consensus 85 ~~~~~Ifsgss---s~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~d-V~IIqS~~----~pd~lmELL 156 (300)
|+++.|+.||. ++.+|++|++.+ .-.-..+.+ .... + .+++...+ ++++.|++ .|++..+++
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~-~~~g~~~~~--~~~~--~-----~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~ 70 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKL-EEAGFSTET--LHGP--L-----LDDLSASGLWLIVTSTHGAGDLPDNLQPFF 70 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHH-HHcCCceEE--eccC--C-----HHHhccCCeEEEEECCCCCCCCChhHHHHH
Confidence 34677888766 458899998887 211112222 1222 1 12333444 66677776 246655544
Q ss_pred HHHHhc-ccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEe
Q 022268 157 SVIYAL-PKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTF 217 (300)
Q Consensus 157 llidAl-rragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItv 217 (300)
-.+..- ....-+++.+ +- --|+.. +.=.-.++.+-+.|+.+ |+++|.-.
T Consensus 71 ~~L~~~~~~l~g~~~aV-fG-----lGds~Y-~~fc~~~~~ld~~l~~l-----Ga~~v~~~ 120 (146)
T PRK09004 71 EELQEQKPDLSQVRFAA-IG-----IGSSEY-DTFCGAIDKLEQLLKAK-----GAKQIGET 120 (146)
T ss_pred HHHHhcCCCCCCCEEEE-Ee-----ecCCCH-HHHhHHHHHHHHHHHHc-----CCeEeecc
Confidence 433221 1111123222 11 112211 11123466777888855 88887643
No 118
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=30.74 E-value=29 Score=32.30 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.1
Q ss_pred HHHHhcccCCCceEEEEeccCCC
Q 022268 157 SVIYALPKLFVSSFTLVLPFFPT 179 (300)
Q Consensus 157 llidAlrragAk~ItlVIPYf~Y 179 (300)
-+++||+..|++||-++-||.+.
T Consensus 110 A~~~AL~alg~~RIalvTPY~~~ 132 (239)
T TIGR02990 110 AAVDGLAALGVRRISLLTPYTPE 132 (239)
T ss_pred HHHHHHHHcCCCEEEEECCCcHH
Confidence 36789999999999999999765
No 119
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=30.74 E-value=1.5e+02 Score=21.77 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=28.4
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhC-CCceeeeEEeeeCCC
Q 022268 86 KKVCLFYCPETHSLAERVAAQSD-AIELRSINWRKFKDG 123 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~-gi~l~~i~~~rFpDG 123 (300)
....++.|.....|+++|.+.|+ |+++..--.-.|..+
T Consensus 4 ~~Yr~lt~~d~~~fc~rVt~aL~~GW~l~GsP~~t~~~~ 42 (54)
T PF08410_consen 4 KHYRVLTGPDDSAFCHRVTEALNEGWQLYGSPTYTFDGG 42 (54)
T ss_pred ceeEEEECCChHHHHHHHHHHHHcCCEecCCceEEECCC
Confidence 34789999999999999999874 566655555556543
No 120
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=30.39 E-value=75 Score=29.89 Aligned_cols=81 Identities=12% Similarity=0.021 Sum_probs=53.5
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhccc
Q 022268 85 MKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPK 164 (300)
Q Consensus 85 ~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlrr 164 (300)
.+.+.+|++.++..+|...+.+|. .......-..|. +........+...||+|+=|.++- --|++-++..+|+
T Consensus 130 A~rI~~~G~g~S~~vA~~~~~~l~---~ig~~~~~~~d~--~~~~~~~~~~~~~Dv~i~iS~sG~--t~e~i~~a~~ak~ 202 (281)
T COG1737 130 ARRIYFFGLGSSGLVASDLAYKLM---RIGLNVVALSDT--HGQLMQLALLTPGDVVIAISFSGY--TREIVEAAELAKE 202 (281)
T ss_pred CCeEEEEEechhHHHHHHHHHHHH---HcCCceeEecch--HHHHHHHHhCCCCCEEEEEeCCCC--cHHHHHHHHHHHH
Confidence 356888888888899999999882 344445556664 232223345667899998887643 2244455667888
Q ss_pred CCCceEEE
Q 022268 165 LFVSSFTL 172 (300)
Q Consensus 165 agAk~Itl 172 (300)
.|++-|.+
T Consensus 203 ~ga~vIai 210 (281)
T COG1737 203 RGAKVIAI 210 (281)
T ss_pred CCCcEEEE
Confidence 99876655
No 121
>PF05124 S_layer_C: S-layer like family, C-terminal region ; InterPro: IPR022651 This entry represents the C-terminal domain of S-layer proteins. Some local similarity can be found to other S-layer protein families.
Probab=30.15 E-value=1.4e+02 Score=27.80 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=36.8
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCC-CCCCCeEEEEeecCC
Q 022268 84 TMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAH-GIRGQHVAFLASFSS 148 (300)
Q Consensus 84 ~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~e-sVrG~dV~IIqS~~~ 148 (300)
..+++.|+.|+-...|++++...+ .+++ + ||..--+++.+ ...|.+|+||.....
T Consensus 153 ~~~nlILVGGPvaN~~t~~l~~~~-~i~i--------~-~~~~gvi~~~~~~~n~~~VivvAG~Dr 208 (222)
T PF05124_consen 153 IDKNLILVGGPVANKLTKELNDEF-PIKI--------P-GENPGVIQVIKNPFNGYDVIVVAGSDR 208 (222)
T ss_pred CCCCEEEECCchHHHHHHHHHhcC-cccc--------c-CCCceEEEEEecCCCCCEEEEEeCCCH
Confidence 347899999999999999999888 5544 3 32222333222 233888999987643
No 122
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=30.01 E-value=1.5e+02 Score=29.10 Aligned_cols=95 Identities=6% Similarity=0.068 Sum_probs=57.1
Q ss_pred ccCCCCcEEEEeCCCC-HHHHHHHHHHhCCCceeee-EEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHH
Q 022268 81 ASRTMKKVCLFYCPET-HSLAERVAAQSDAIELRSI-NWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLS 157 (300)
Q Consensus 81 ~~~~~~~~~Ifsgsss-~~LA~~IA~~L~gi~l~~i-~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLl 157 (300)
+..+.++.+|++-... -.=+..+|+.| +.....+ ..++-.++- .+..-+-.+|+|+.+++|..+.+- -.+ ..
T Consensus 158 ~~~~~~~~vivSPdaGgaKR~~s~ad~l-~~~fali~ker~k~~~v-~~~m~LVGDv~gkvailVDDm~dt~GTl---~~ 232 (316)
T KOG1448|consen 158 NIPDSENAVIVSPDAGGAKRVTSLADRL-NLDFALIHKERRKANEV-DIRMVLVGDVKGKVAILVDDMADTCGTL---IK 232 (316)
T ss_pred hCCCccceEEECCCcchhhhhHHHHHhh-cchhhhhhhhhhccccc-ceEEEEEeccCCcEEEEecccccccchH---HH
Confidence 4667777777764443 24466667777 4443322 223333331 122333468999999999877532 333 33
Q ss_pred HHHhcccCCCceEEEEeccCCCc
Q 022268 158 VIYALPKLFVSSFTLVLPFFPTG 180 (300)
Q Consensus 158 lidAlrragAk~ItlVIPYf~YA 180 (300)
..+-|.+.||++|.++.+.-=++
T Consensus 233 aa~~L~~~GA~kV~a~~THgVfs 255 (316)
T KOG1448|consen 233 AADKLLEHGAKKVYAIVTHGVFS 255 (316)
T ss_pred HHHHHHhcCCceEEEEEcceecc
Confidence 45566679999999999875543
No 123
>PRK09271 flavodoxin; Provisional
Probab=29.97 E-value=3.5e+02 Score=23.00 Aligned_cols=68 Identities=12% Similarity=0.202 Sum_probs=35.4
Q ss_pred EEEEeCCC---CHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEee-cC----CchhHHHHHHHH
Q 022268 88 VCLFYCPE---THSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLAS-FS----SPGKIFEQLSVI 159 (300)
Q Consensus 88 ~~Ifsgss---s~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS-~~----~pd~lmELLlli 159 (300)
+.|+.+|. +..+|+.|++.| ...-.++.+...++. ++. .+..++...+++|+.+ +. .|+++..++--+
T Consensus 3 v~IvY~S~tGnTe~~A~~ia~~l-~~~g~~v~~~~~~~~--~~~-~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l 78 (160)
T PRK09271 3 ILLAYASLSGNTREVAREIEERC-EEAGHEVDWVETDVQ--TLA-EYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAEL 78 (160)
T ss_pred EEEEEEcCCchHHHHHHHHHHHH-HhCCCeeEEEecccc--ccc-ccccCcccCCEEEEECcccCCCcCCHHHHHHHHHH
Confidence 34555443 468999999998 333334444444443 111 1123444567777776 43 234455554333
No 124
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=28.32 E-value=3.6e+02 Score=23.14 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=45.3
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhccc
Q 022268 86 KKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPK 164 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrr 164 (300)
+++.+++..++..+|+.++.+|. .++ ....-..|. . ......+|++|+=|.+.. .+++ .++..+++
T Consensus 34 ~~I~i~G~G~S~~~A~~~~~~l~--~~g-~~~~~~~~~--~-----~~~~~~~D~vI~iS~sG~t~~~i---~~~~~ak~ 100 (179)
T cd05005 34 KRIFVYGAGRSGLVAKAFAMRLM--HLG-LNVYVVGET--T-----TPAIGPGDLLIAISGSGETSSVV---NAAEKAKK 100 (179)
T ss_pred CeEEEEecChhHHHHHHHHHHHH--hCC-CeEEEeCCC--C-----CCCCCCCCEEEEEcCCCCcHHHH---HHHHHHHH
Confidence 67888876677788998888872 222 122223332 1 234556888888787644 4444 45566788
Q ss_pred CCCceEEE
Q 022268 165 LFVSSFTL 172 (300)
Q Consensus 165 agAk~Itl 172 (300)
.|++-|.+
T Consensus 101 ~g~~iI~I 108 (179)
T cd05005 101 AGAKVVLI 108 (179)
T ss_pred CCCeEEEE
Confidence 88865544
No 125
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=28.08 E-value=78 Score=30.81 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=35.8
Q ss_pred ceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCC
Q 022268 168 SSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIH 220 (300)
Q Consensus 168 k~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlH 220 (300)
..+|.+.|=- -.++.+++|..++...++.+++ +|.++|++.++-
T Consensus 6 Hd~t~~~p~~---~k~~~~~kG~vi~~~di~~L~~------~G~~~v~v~~~~ 49 (312)
T cd03522 6 HDITRIGPGE---FKGRAFKKGHVLTAEDIAALLA------AGKEHVYVARLE 49 (312)
T ss_pred eeeecccCCc---ccCceecCCCCCCHHHHHHHHh------CCCcEEEEEECC
Confidence 4566666633 2678899999999999999999 599999998764
No 126
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=27.56 E-value=3.5e+02 Score=23.08 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=45.6
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcc
Q 022268 85 MKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALP 163 (300)
Q Consensus 85 ~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlr 163 (300)
.+++.+++.-.+..+|+.++.+|. .++. ...-..|. . ...+..+|++|+-|.+.. .++++ ++..+|
T Consensus 30 a~~I~i~G~G~S~~~A~~~~~~l~--~~g~-~~~~~~~~---~----~~~~~~~Dv~I~iS~sG~t~~~i~---~~~~ak 96 (179)
T TIGR03127 30 AKRIFVAGAGRSGLVGKAFAMRLM--HLGF-NVYVVGET---T----TPSIKKGDLLIAISGSGETESLVT---VAKKAK 96 (179)
T ss_pred CCEEEEEecCHHHHHHHHHHHHHH--hCCC-eEEEeCCc---c----cCCCCCCCEEEEEeCCCCcHHHHH---HHHHHH
Confidence 467888876667788888888872 3332 22223332 1 134556889998887643 44444 455578
Q ss_pred cCCCceEEE
Q 022268 164 KLFVSSFTL 172 (300)
Q Consensus 164 ragAk~Itl 172 (300)
+.|++-|.+
T Consensus 97 ~~g~~ii~I 105 (179)
T TIGR03127 97 EIGATVAAI 105 (179)
T ss_pred HCCCeEEEE
Confidence 888765544
No 127
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=27.54 E-value=2.6e+02 Score=23.35 Aligned_cols=85 Identities=14% Similarity=0.100 Sum_probs=46.5
Q ss_pred HHHHHHHHhcccCCCc-eEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccCCC
Q 022268 153 FEQLSVIYALPKLFVS-SFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDT 231 (300)
Q Consensus 153 mELLllidAlrragAk-~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~~~ 231 (300)
-.+.-+++.+++...+ .|.++.|.+....+.. .-..+.+.++++.. +-.+|..+|.|..-...++.+.
T Consensus 81 ~~~~~li~~i~~~~p~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-----~~~~v~~id~~~~~~~~~~~Dg 149 (169)
T cd01831 81 NAYVEFIEELRKRYPDAPIVLMLGPMLFGPYGT------EEEIKRVAEAFKDQ-----KSKKVHYFDTPGILQHNDIGCD 149 (169)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCcccccccc------HHHHHHHHHHHHhc-----CCceEEEEecccccCCCCcCCC
Confidence 3555666777765543 4545444443322111 11234566666643 3368999999874333445545
Q ss_pred cccCCcccHHHHHHHHhc
Q 022268 232 ILPCFESAIPLLLNRLQQ 249 (300)
Q Consensus 232 v~~l~L~a~~lL~~~l~~ 249 (300)
+.+ +-.+...+++.+.+
T Consensus 150 iHP-n~~G~~~iA~~l~~ 166 (169)
T cd01831 150 WHP-TVAGHQKIAKHLLP 166 (169)
T ss_pred CCC-CHHHHHHHHHHHHH
Confidence 443 55677777777654
No 128
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=26.84 E-value=79 Score=27.59 Aligned_cols=38 Identities=5% Similarity=0.005 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCC-CCCCeEEEeCCcccHHHHHHHHhhCC
Q 022268 240 IPLLLNRLQQLP-DSDNISIAFPDDGAWKRFHKQLQHFP 277 (300)
Q Consensus 240 ~~lL~~~l~~~~-~~~n~vIVSPD~GA~kRA~~~A~~l~ 277 (300)
...|++.+.+.. +..+++||+++.|+..+|..+++.|+
T Consensus 16 i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~ 54 (176)
T PRK05205 16 LTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLE 54 (176)
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHH
Confidence 344555554421 23579999999999999999999885
No 129
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.75 E-value=5.3e+02 Score=24.08 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=42.2
Q ss_pred CCCCEEEEecCChhhhhcccCCCcccCCcccHHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCC-Cccccccccc
Q 022268 209 GGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFP-MVLRMPYVDL 287 (300)
Q Consensus 209 aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~-~vv~~~~~~~ 287 (300)
+|+|.||..|+ |.+. ...+.+.+++. +.+...+++|.. ..+|.+.+++.-+ .+.+|...+.
T Consensus 114 aGvdgviipDl-----------p~ee-----~~~~~~~~~~~-gl~~i~lv~P~T-~~eri~~i~~~~~gfiy~vs~~G~ 175 (256)
T TIGR00262 114 VGVDGVLVADL-----------PLEE-----SGDLVEAAKKH-GVKPIFLVAPNA-DDERLKQIAEKSQGFVYLVSRAGV 175 (256)
T ss_pred cCCCEEEECCC-----------ChHH-----HHHHHHHHHHC-CCcEEEEECCCC-CHHHHHHHHHhCCCCEEEEECCCC
Confidence 59999999885 3332 34566666664 555567888887 4578888877665 6666665555
Q ss_pred cCC
Q 022268 288 YCV 290 (300)
Q Consensus 288 lg~ 290 (300)
-|.
T Consensus 176 TG~ 178 (256)
T TIGR00262 176 TGA 178 (256)
T ss_pred CCC
Confidence 554
No 130
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=26.72 E-value=74 Score=28.44 Aligned_cols=39 Identities=8% Similarity=0.018 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCC
Q 022268 240 IPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPM 278 (300)
Q Consensus 240 ~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~ 278 (300)
...+++.|.+.....+++||++..||.-.|..+++.|+.
T Consensus 21 i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~ 59 (189)
T PLN02238 21 VAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQP 59 (189)
T ss_pred HHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCc
Confidence 344666665432335689999999999999999988875
No 131
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=26.72 E-value=1.6e+02 Score=30.50 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=44.9
Q ss_pred CeEEEEeecCCchhHHHHHHHHHhcccCCCceEEEEeccCCCccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEe
Q 022268 138 QHVAFLASFSSPGKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTF 217 (300)
Q Consensus 138 ~dV~IIqS~~~pd~lmELLllidAlrragAk~ItlVIPYf~YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItv 217 (300)
+.++|+ +-+++|-+--.+.|..+|++.|. .+..++|. |..+ |=.++...+-++.. .|.+-|||+
T Consensus 55 ~~I~I~-gh~D~DGi~S~~~L~~~L~~~g~-~v~~~ip~----r~~~----~yg~~~~~i~~~~~------~~~~LiI~v 118 (539)
T TIGR00644 55 EKILIF-GDYDVDGITSTAILVEFLKDLGV-NVDYYIPN----RITE----GYGLSPEALREAIE------NGVSLIITV 118 (539)
T ss_pred CeEEEE-EccCCCcHHHHHHHHHHHHHCCC-ceEEEeCC----CCcc----cCCCCHHHHHHHHh------cCCCEEEEe
Confidence 445444 44577899999999999999995 66777764 2211 11133333434433 267888888
Q ss_pred cCChhhh
Q 022268 218 DIHALQE 224 (300)
Q Consensus 218 DlHs~qi 224 (300)
|.-+.+.
T Consensus 119 D~G~~~~ 125 (539)
T TIGR00644 119 DNGISAH 125 (539)
T ss_pred CCCcccH
Confidence 8776543
No 132
>PRK05568 flavodoxin; Provisional
Probab=26.69 E-value=3.5e+02 Score=21.97 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=28.9
Q ss_pred cEEEEeCCC---CHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEee
Q 022268 87 KVCLFYCPE---THSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLAS 145 (300)
Q Consensus 87 ~~~Ifsgss---s~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS 145 (300)
++.|+..|. ++.+|+.|++.+ .-.-.++++....+-. . .++.+.|.+|+.+
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~-~~~g~~v~~~~~~~~~--~-----~~~~~~d~iilgs 56 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGA-KENGAEVKLLNVSEAS--V-----DDVKGADVVALGS 56 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHH-HHCCCeEEEEECCCCC--H-----HHHHhCCEEEEEC
Confidence 445555433 558899999987 3222244444444421 1 2466778777766
No 133
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.46 E-value=4.1e+02 Score=26.44 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=77.5
Q ss_pred HHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhcccCCCceEEEEeccCC
Q 022268 99 LAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPKLFVSSFTLVLPFFP 178 (300)
Q Consensus 99 LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlrragAk~ItlVIPYf~ 178 (300)
.|-.+|..+ |.+...-.+..|..- +-+.++-... ..+.+|...+ +.+.- -++.|++....++|++|+- |
T Consensus 239 aA~a~a~~~-G~~~~~~~L~~f~~~--~~R~e~~~~~--~gv~~idDs~-~tn~~---a~~~al~~~~~~~ii~IlG--G 307 (401)
T PRK03815 239 LALAVYKIL-FDELDYERLNAFKIG--KHKLEEFRDK--QGRLWVDDSK-ATNVD---ATLQALKRYKDKKIHLILG--G 307 (401)
T ss_pred HHHHHHHHh-CcHHHHHHHHhCCCC--CceEEEEEEE--CCEEEEECCC-CCCHH---HHHHHHHhCCCCCEEEEEC--C
Confidence 344455666 522222224566655 3455543222 2466776653 33332 3334444333357888887 3
Q ss_pred CccccccCCCCCcccHHHHHHHHhcCCCCCCCCCEEEEecCChhhhhcccC---CCcccCCcccHHHHHHHHhcCCCCCC
Q 022268 179 TGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFG---DTILPCFESAIPLLLNRLQQLPDSDN 255 (300)
Q Consensus 179 YARQDR~~~~Ge~isak~vA~lL~slp~~~aG~drVItvDlHs~qi~~fF~---~~v~~l~L~a~~lL~~~l~~~~~~~n 255 (300)
. || ++... .+++.+.. .+. .|+++--+...+...+. .++.. ......+.+++.+....++
T Consensus 308 ~---~k----~~~~~--~l~~~~~~-----~~~-~v~~~G~~~~~~~~~~~~~~~~~~~--~~~~e~av~~~~~~~~~gd 370 (401)
T PRK03815 308 D---DK----GVDLT--PLFEFMKN-----LNI-ELYAIGSNTEKIQALAKEFNIKAFV--CEFLEKAVEEIKKVLKQNE 370 (401)
T ss_pred C---CC----CCCHH--HHHHHHHh-----hCc-EEEEECCCHHHHHHHHhcCCCeEEE--eCCHHHHHHHHHHhCCCCC
Confidence 1 11 22222 46666663 244 59999887765544332 12211 1224445555544334567
Q ss_pred eEEEeCCcccHHHHHHHHh
Q 022268 256 ISIAFPDDGAWKRFHKQLQ 274 (300)
Q Consensus 256 ~vIVSPD~GA~kRA~~~A~ 274 (300)
.|++||-.-.....+.|.+
T Consensus 371 vVLlSPa~aSfd~f~ny~~ 389 (401)
T PRK03815 371 VALLSPAAASLDQFKSYKE 389 (401)
T ss_pred EEEeChhhhccccccCHHH
Confidence 9999999988888877765
No 134
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.21 E-value=1.9e+02 Score=21.06 Aligned_cols=79 Identities=13% Similarity=0.048 Sum_probs=43.3
Q ss_pred EEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCCC
Q 022268 89 CLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLFV 167 (300)
Q Consensus 89 ~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrragA 167 (300)
.+++.-++..+|+.....|. ++......-.++++ .........+..+|++|+=|.+.. .++. .+++.+|+.|+
T Consensus 2 ~i~g~G~s~~~a~~~~~~l~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~iS~sg~t~~~~---~~~~~a~~~g~ 75 (87)
T cd04795 2 FVIGIGGSGAIAAYFALELL--ELTGIEVVALIATE-LEHASLLSLLRKGDVVIALSYSGRTEELL---AALEIAKELGI 75 (87)
T ss_pred EEEEcCHHHHHHHHHHHHHh--cccCCceEEeCCcH-HHHHHHHhcCCCCCEEEEEECCCCCHHHH---HHHHHHHHcCC
Confidence 34554467788888888882 44234444444442 121110123445788887776543 3344 45567788887
Q ss_pred ceEEEE
Q 022268 168 SSFTLV 173 (300)
Q Consensus 168 k~ItlV 173 (300)
+-|.+.
T Consensus 76 ~ii~it 81 (87)
T cd04795 76 PVIAIT 81 (87)
T ss_pred eEEEEe
Confidence 655443
No 135
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=26.11 E-value=2.3e+02 Score=25.32 Aligned_cols=67 Identities=10% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHH----HHHHHHHhcccCCCceEEEEe
Q 022268 99 LAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIF----EQLSVIYALPKLFVSSFTLVL 174 (300)
Q Consensus 99 LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lm----ELLllidAlrragAk~ItlVI 174 (300)
||..+|..+ |+++.-+.-..=.-| +-......-.+|+.|+|| ||++ -++-+++.++++|+.-+-+++
T Consensus 87 lA~~vA~~l-~~p~v~vRK~~k~~g--~~~~~~g~~~~g~rVlIV------DDVitTGgS~~~~i~~l~~~Ga~V~~v~v 157 (187)
T PRK13810 87 LATAVSLET-GLPLLIVRKSVKDYG--TGSRFVGDLKPEDRIVML------EDVTTSGGSVREAIEVVREAGAYIKYVIT 157 (187)
T ss_pred HHHHHHHHh-CCCEEEEecCCCccC--CCceEEccCCCcCEEEEE------EeccCCChHHHHHHHHHHHCCCEEEEEEE
No 136
>PRK09213 pur operon repressor; Provisional
Probab=25.98 E-value=1.1e+02 Score=29.39 Aligned_cols=23 Identities=0% Similarity=-0.231 Sum_probs=19.6
Q ss_pred CCeEEEeCCcccHHHHHHHHhhC
Q 022268 254 DNISIAFPDDGAWKRFHKQLQHF 276 (300)
Q Consensus 254 ~n~vIVSPD~GA~kRA~~~A~~l 276 (300)
+-.+|+.|+.++.-.|..+|..|
T Consensus 130 ~iD~Vvtvet~GIplA~~vA~~L 152 (271)
T PRK09213 130 KIDAVMTVETKGIPLAYAVANYL 152 (271)
T ss_pred CCCEEEEEccccHHHHHHHHHHH
Confidence 44689999999999999999544
No 137
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.84 E-value=85 Score=31.07 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=42.0
Q ss_pred CCCEEEEecCChhhhhcccC---CCcccCCcccHHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhh
Q 022268 210 GPTSLVTFDIHALQERFYFG---DTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQH 275 (300)
Q Consensus 210 G~drVItvDlHs~qi~~fF~---~~v~~l~L~a~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~ 275 (300)
.++.|+++..+...+...+. .++.. ........+++.+....++.|++||..|+....+.|.++
T Consensus 368 ~~~~vil~G~~~~~l~~~l~~~~~~~~~--~~~~e~a~~~~~~~~~~~d~VL~sp~~~S~d~f~~~~~R 434 (445)
T PRK04308 368 KAKGVFLIGVDAPQIRRDLDGCGLNLTD--CATLEEAVQRAYAQAEAGDIVLLSPACASFDMFKGYAHR 434 (445)
T ss_pred hCcEEEEECCCHHHHHHHHHhcCCCeEe--cCCHHHHHHHHHHhCCCCCEEEEChhhhhhccccCHHHH
Confidence 36899999998876654432 12221 123444445554433456899999999999999988863
No 138
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=25.49 E-value=2e+02 Score=27.02 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=45.8
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCchhHHHHHHHHHhcccC
Q 022268 86 KKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPKL 165 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~pd~lmELLllidAlrra 165 (300)
+.+.+++.-.+..+|+.++.+|. .++..... ..|. +...........+||+|+-|.+.. --|++.++..+|+.
T Consensus 43 ~~I~i~G~G~S~~~A~~~~~~l~--~~g~~~~~-~~~~--~~~~~~~~~~~~~d~~i~iS~sG~--t~~~~~~~~~ak~~ 115 (321)
T PRK11543 43 GKVVVSGIGKSGHIGKKIAATLA--STGTPAFF-VHPA--EALHGDLGMIESRDVMLFISYSGG--AKELDLIIPRLEDK 115 (321)
T ss_pred CcEEEEecChhHHHHHHHHHHHH--cCCCceee-cChH--HHhhCCcCccCCCCEEEEEeCCCC--cHHHHHHHHHHHHc
Confidence 46888876678788999998882 34433221 2222 122222234556789988776543 23455566677888
Q ss_pred CCceE
Q 022268 166 FVSSF 170 (300)
Q Consensus 166 gAk~I 170 (300)
|++-|
T Consensus 116 g~~vI 120 (321)
T PRK11543 116 SIALL 120 (321)
T ss_pred CCeEE
Confidence 87543
No 139
>TIGR01564 S_layer_MJ S-layer protein, MJ0822 family. This model represents one of several families of proteins associated with the formation of prokaryotic S-layers. Members of this family are found in archaeal species, including Pyrococcus horikoshii (split into two tandem reading frames), Methanococcus jannaschii, and related species. Some local similarity can be found to other S-layer protein families.
Probab=24.84 E-value=1.4e+02 Score=31.66 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=40.9
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc
Q 022268 84 TMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP 149 (300)
Q Consensus 84 ~~~~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p 149 (300)
-.+++.++.|+-...|.++|...+ .+++. .-+.| ....+.....|.+|+|+....+.
T Consensus 502 ~~~nlILVGGPv~N~ltk~l~~~~-~i~i~-----n~~p~---~~~~~~~~~ng~~vlvvAG~dr~ 558 (571)
T TIGR01564 502 ADKNLILVGGPVANKLTKELADAG-KVPKT-----ESSPA---TYAEKCGAANGYDVLVVAGGDRE 558 (571)
T ss_pred CCCCEEEECCcchhHHHHHHHhcC-ceecc-----CCCcc---eeeeeccccCCceEEEEeCCChH
Confidence 347899999999888888888887 55544 45556 34555555668999999776543
No 140
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=24.73 E-value=1.1e+02 Score=29.15 Aligned_cols=23 Identities=0% Similarity=-0.247 Sum_probs=19.8
Q ss_pred CCeEEEeCCcccHHHHHHHHhhC
Q 022268 254 DNISIAFPDDGAWKRFHKQLQHF 276 (300)
Q Consensus 254 ~n~vIVSPD~GA~kRA~~~A~~l 276 (300)
+-.+|+.|..++.-.|..+|..|
T Consensus 128 ~iD~VvgvetkGIpLA~avA~~L 150 (268)
T TIGR01743 128 EIDAVMTVATKGIPLAYAVASVL 150 (268)
T ss_pred CCCEEEEEccchHHHHHHHHHHH
Confidence 45689999999999999999554
No 141
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=24.18 E-value=3.7e+02 Score=21.44 Aligned_cols=74 Identities=8% Similarity=0.015 Sum_probs=37.9
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEeecCCc-hhHHHHHHHHHhcccCC
Q 022268 88 VCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSP-GKIFEQLSVIYALPKLF 166 (300)
Q Consensus 88 ~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS~~~p-d~lmELLllidAlrrag 166 (300)
+.+++.-++...|+.....+ . ........-..|. +. ......+|++|+-|.+.. .++++ .++.+|+.|
T Consensus 2 I~i~G~G~S~~~a~~~~~~l-~-~~~~~~~~~~~~~--~~----~~~~~~~dl~I~iS~SG~t~e~i~---~~~~a~~~g 70 (119)
T cd05017 2 IVILGMGGSGIGGDLLESLL-L-DEAKIPVYVVKDY--TL----PAFVDRKTLVIAVSYSGNTEETLS---AVEQAKERG 70 (119)
T ss_pred EEEEEcCHHHHHHHHHHHHH-H-hccCCCEEEecCc--cC----cCCCCCCCEEEEEECCCCCHHHHH---HHHHHHHCC
Confidence 44444334445566555555 2 2223333333443 11 224556788888776543 34444 555667788
Q ss_pred CceEEE
Q 022268 167 VSSFTL 172 (300)
Q Consensus 167 Ak~Itl 172 (300)
++-|.+
T Consensus 71 ~~iI~I 76 (119)
T cd05017 71 AKIVAI 76 (119)
T ss_pred CEEEEE
Confidence 755443
No 142
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=23.96 E-value=1.1e+02 Score=28.37 Aligned_cols=30 Identities=7% Similarity=-0.135 Sum_probs=22.8
Q ss_pred CCeEEEeCCcccHHHHHHHHhhCC--Cccccc
Q 022268 254 DNISIAFPDDGAWKRFHKQLQHFP--MVLRMP 283 (300)
Q Consensus 254 ~n~vIVSPD~GA~kRA~~~A~~l~--~vv~~~ 283 (300)
+-.+|+.++.|+.-.|..+|..|+ .+++.+
T Consensus 111 ~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk 142 (238)
T PRK08558 111 RVDVVLTAATDGIPLAVAIASYFGADLVYAKK 142 (238)
T ss_pred CCCEEEEECcccHHHHHHHHHHHCcCEEEEEe
Confidence 446889999999999999997664 344443
No 143
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=23.54 E-value=2e+02 Score=22.70 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=23.2
Q ss_pred EEeecCCchhHHHHHHHHHhcccCCCceEEEEecc
Q 022268 142 FLASFSSPGKIFEQLSVIYALPKLFVSSFTLVLPF 176 (300)
Q Consensus 142 IIqS~~~pd~lmELLllidAlrragAk~ItlVIPY 176 (300)
+-+.+...+.|.+|+..+++. ..+.....++-+|
T Consensus 18 ~~rrF~~~~~L~~v~~fv~~~-g~~~~~f~L~t~F 51 (82)
T cd01773 18 EQIALPEQAKLLALVRHVQSK-GYPNERFELLTNF 51 (82)
T ss_pred EEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCC
Confidence 455666668888999998884 3444666666554
No 144
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.24 E-value=2.7e+02 Score=27.38 Aligned_cols=63 Identities=6% Similarity=0.079 Sum_probs=38.8
Q ss_pred CCCEEEEecCChhhhhcccC--CCcccCCcccHHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHh
Q 022268 210 GPTSLVTFDIHALQERFYFG--DTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQ 274 (300)
Q Consensus 210 G~drVItvDlHs~qi~~fF~--~~v~~l~L~a~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~ 274 (300)
.++.|+++-.....+...+. .++.. ........+++.+....++.|+++|..++....+.+.+
T Consensus 338 ~~~~v~~~G~~~~~i~~~l~~~~~~~~--~~~~~~a~~~~~~~~~~gd~VLlsp~~~s~d~f~~~~~ 402 (418)
T PRK00683 338 TAKHVVAMGECRQEIAQALSEKFPLTV--VKDLQEAVSCAQEIAQPGDVILLSPGCASFDQFRSFEE 402 (418)
T ss_pred hCCEEEEECCCHHHHHHHHhcCCCEEE--eCCHHHHHHHHHHhCCCCCEEEECchhcccccccCHHH
Confidence 47899999877655544332 12221 12344455555543345678999999998877766654
No 145
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.15 E-value=4.1e+02 Score=26.09 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=36.6
Q ss_pred CCEEEEecCChhhhhcccC---CCcccCCcccHHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHh
Q 022268 211 PTSLVTFDIHALQERFYFG---DTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQ 274 (300)
Q Consensus 211 ~drVItvDlHs~qi~~fF~---~~v~~l~L~a~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~ 274 (300)
++.|+++-.+...+...+. .++.. ........+++.+....+++|+++|-.-...+.+.|.+
T Consensus 368 ~~~v~~~G~~~~~l~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~d~VLls~a~~s~d~f~~~~~ 432 (447)
T PRK02472 368 VKAMVVFGETAEKLARAAEKAGITVVE--ADNVEDAVPKAYELSEPGDVILLSPACASWDQYKTFEE 432 (447)
T ss_pred cCEEEEECCCHHHHHHHHHhCCCceEE--cCCHHHHHHHHHHhCCCCCEEEeCccccccccccCHHH
Confidence 7899999887766654442 12221 12344444444432244679999997766666666654
No 146
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=22.94 E-value=2.1e+02 Score=24.65 Aligned_cols=67 Identities=6% Similarity=-0.085 Sum_probs=44.5
Q ss_pred CCCCEEEEecCChhhhhcccCCCcccCCcccHHHHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCCcccccccc
Q 022268 209 GGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMVLRMPYVD 286 (300)
Q Consensus 209 aG~drVItvDlHs~qi~~fF~~~v~~l~L~a~~lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~vv~~~~~~ 286 (300)
.|+|+|+.++--. . ..|+ .+ .-...|++.+++. ..+.|++.-..-+...+-.+|.+|+..+-+-+++
T Consensus 58 ~Gad~v~~~~~~~--~-~~~~--~~----~~a~~l~~~i~~~--~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~~ 124 (181)
T cd01985 58 MGADKVLLVEDPA--L-AGYD--PE----ATAKALAALIKKE--KPDLILAGATSIGKQLAPRVAALLGVPQISDVTK 124 (181)
T ss_pred hCCCEEEEEecCc--c-cCCC--hH----HHHHHHHHHHHHh--CCCEEEECCcccccCHHHHHHHHhCCCcceeEEE
Confidence 5999999997221 1 1122 12 1257777877763 3678888888888899999999888654444433
No 147
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=22.90 E-value=1.4e+02 Score=27.13 Aligned_cols=68 Identities=25% Similarity=0.257 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHhcccCCCceEEEEeccCCCccccccC-CCCC-cccHHHHHHH----HhcCCCCCCCCCEEEEecCChh
Q 022268 150 GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERME-DEGD-VATAFTLARI----LSNIPTSRGGPTSLVTFDIHAL 222 (300)
Q Consensus 150 d~lmELLllidAlrragAk~ItlVIPYf~YARQDR~~-~~Ge-~isak~vA~l----L~slp~~~aG~drVItvDlHs~ 222 (300)
|.++--.+...++++.+. .+|+|=++|.=..-.. .+|. .++..++..+ +.++ ...|+.+|+.+.=|-.
T Consensus 38 D~~ia~~~a~~~a~~~~~---~lv~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl--~~~Gf~~ivivngHgG 111 (237)
T PF02633_consen 38 DTLIAEAVAERAAERLGE---ALVLPPIPYGCSPHHMGFPGTISLSPETLIALLRDILRSL--ARHGFRRIVIVNGHGG 111 (237)
T ss_dssp HHHHHHHHHHHHHHHHTH---EEE---B--BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHH--HHHT--EEEEEESSTT
T ss_pred HHHHHHHHHHHHHHHCCc---EEEeCCCccccCcccCCCCCeEEeCHHHHHHHHHHHHHHH--HHcCCCEEEEEECCHh
Confidence 788988999999999886 8999988887643332 2442 3444444333 2322 1359999999999964
No 148
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=22.39 E-value=2.2e+02 Score=25.87 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=42.2
Q ss_pred CCCcEEEEeC-CCCHHHHHHHHHHhCC-----CceeeeEEeeeCCCCeeEEee----------cCCCCCCCeEEEEeec
Q 022268 84 TMKKVCLFYC-PETHSLAERVAAQSDA-----IELRSINWRKFKDGFPNLFIP----------NAHGIRGQHVAFLASF 146 (300)
Q Consensus 84 ~~~~~~Ifsg-sss~~LA~~IA~~L~g-----i~l~~i~~~rFpDGE~Ei~V~----------i~esVrG~dV~IIqS~ 146 (300)
+-.++++++- +..-+||++|++.+.. ++++.+.+.=|-|.- .+.. ++.++.|+.|++|...
T Consensus 29 ~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl--~~~~~~~p~~~~t~~~~di~~k~VILVDDV 105 (179)
T COG2065 29 GLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDL--TQKGPLRPQAKTTILPFDITGKRVILVDDV 105 (179)
T ss_pred CCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechh--hhcCccCCcccCccCcccccCCEEEEEeee
Confidence 3356777764 4467999999998742 347888888888852 1111 2456889999999775
No 149
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=21.96 E-value=5.1e+02 Score=23.17 Aligned_cols=71 Identities=8% Similarity=-0.007 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHhCCCceeeeEEe-eeCC-CC------------eeEEeecCC--CCCCCeEEEEeecCCc-hhHHHHH
Q 022268 94 PETHSLAERVAAQSDAIELRSINWR-KFKD-GF------------PNLFIPNAH--GIRGQHVAFLASFSSP-GKIFEQL 156 (300)
Q Consensus 94 sss~~LA~~IA~~L~gi~l~~i~~~-rFpD-GE------------~Ei~V~i~e--sVrG~dV~IIqS~~~p-d~lmELL 156 (300)
...-.||..+|..| |.++.-+.-. +.+. |+ .|-.+.+.. --+|+.|+||..+-.- ..+.
T Consensus 59 ~~GiplA~~lA~~L-g~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~--- 134 (189)
T PRK09219 59 ASGIAPAVMAALAL-GVPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAAL--- 134 (189)
T ss_pred cccHHHHHHHHHHH-CCCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHH---
Confidence 44668999999999 7876444322 1211 11 012222322 2368999999776433 3443
Q ss_pred HHHHhcccCCCc
Q 022268 157 SVIYALPKLFVS 168 (300)
Q Consensus 157 llidAlrragAk 168 (300)
-+++.++++|+.
T Consensus 135 a~~~lv~~aGa~ 146 (189)
T PRK09219 135 GLIDIIEQAGAK 146 (189)
T ss_pred HHHHHHHHCCCE
Confidence 445666778874
No 150
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=21.41 E-value=6.6e+02 Score=23.28 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=46.7
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCCceeeeEEeee-------------CCCCeeEEeecC--CCCCCCeEEEEeecCCc-h
Q 022268 87 KVCLFYCPETHSLAERVAAQSDAIELRSINWRKF-------------KDGFPNLFIPNA--HGIRGQHVAFLASFSSP-G 150 (300)
Q Consensus 87 ~~~Ifsgsss~~LA~~IA~~L~gi~l~~i~~~rF-------------pDGE~Ei~V~i~--esVrG~dV~IIqS~~~p-d 150 (300)
+.++-.....-.||..+|..| |+++.-+.-.+. ..|. +..+.++ .-.+|+.|+||..+-.- .
T Consensus 113 D~Vvtv~~~GI~lA~~lA~~L-~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~-~~~~~l~~~~l~~G~rVLIVDDvi~TG~ 190 (238)
T PRK08558 113 DVVLTAATDGIPLAVAIASYF-GADLVYAKKSKETGVEKFYEEYQRLASGI-EVTLYLPASALKKGDRVLIVDDIIRSGE 190 (238)
T ss_pred CEEEEECcccHHHHHHHHHHH-CcCEEEEEecCCCCCcceEEEeeccCCCc-eeEEEecHHHcCCcCEEEEEecccccCH
Confidence 555555677889999999999 788765433221 1121 1122222 22578999999776543 3
Q ss_pred hHHHHHHHHHhcccCCCce
Q 022268 151 KIFEQLSVIYALPKLFVSS 169 (300)
Q Consensus 151 ~lmELLllidAlrragAk~ 169 (300)
.+. -+++.++++|++-
T Consensus 191 Tl~---~~~~ll~~~ga~v 206 (238)
T PRK08558 191 TQR---ALLDLARQAGADV 206 (238)
T ss_pred HHH---HHHHHHHHcCCEE
Confidence 443 4456666777753
No 151
>PRK12359 flavodoxin FldB; Provisional
Probab=21.22 E-value=1.8e+02 Score=25.67 Aligned_cols=107 Identities=19% Similarity=0.126 Sum_probs=50.6
Q ss_pred EEEeCCC---CHHHHHHHHHHhCCCceeeeEEeeeCCCCeeEEeecCCCCCCCeEEEEee-cCC----chhHHHHHHHHH
Q 022268 89 CLFYCPE---THSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLAS-FSS----PGKIFEQLSVIY 160 (300)
Q Consensus 89 ~Ifsgss---s~~LA~~IA~~L~gi~l~~i~~~rFpDGE~Ei~V~i~esVrG~dV~IIqS-~~~----pd~lmELLllid 160 (300)
.||.+|. ++.+|++|++.+ +.... ++..-.+- . .+++.+.|++|+.+ +.. +++..+.+.-+.
T Consensus 4 ~I~Y~S~TGNTe~vAe~I~~~l-g~~~v--~v~~i~~~----~---~~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~ 73 (172)
T PRK12359 4 GLFYGSSTCYTEMAAEKIRDII-GEELV--DLHNLKDD----P---PKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLD 73 (172)
T ss_pred EEEEECCCCHHHHHHHHHHHHh-CCCeE--EEEEcccC----C---hhHHccCCEEEEEecccCCCcCcHHHHHHHHHHh
Confidence 4455444 558999999999 54322 22111111 0 13455677777654 422 245555544433
Q ss_pred hcccCCCceEEEEeccCCCccccccCCCCC--cccHHHHHHHHhcCCCCCCCCCEEEEec
Q 022268 161 ALPKLFVSSFTLVLPFFPTGTSERMEDEGD--VATAFTLARILSNIPTSRGGPTSLVTFD 218 (300)
Q Consensus 161 AlrragAk~ItlVIPYf~YARQDR~~~~Ge--~isak~vA~lL~slp~~~aG~drVItvD 218 (300)
.+. ..-|++.+ |+-.=|.. -++ .-.++.+.+.|.. .|+.-|-.+.
T Consensus 74 ~~d-l~gK~vAl----FG~Gd~~~---y~~~f~~a~~~l~~~l~~-----~Ga~ivG~~~ 120 (172)
T PRK12359 74 DLN-LEGKIVAL----YGMGDQLG---YGEWFLDALGMLHDKLAP-----KGVKFVGYWP 120 (172)
T ss_pred hCC-CCCCEEEE----EeCCCCcc---chHHHHHHHHHHHHHHHh-----CCCeEEeeEe
Confidence 332 22245443 33221110 122 1234567777763 3765555554
No 152
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=20.65 E-value=2.7e+02 Score=21.19 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=19.1
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhC
Q 022268 86 KKVCLFYCPETHSLAERVAAQSD 108 (300)
Q Consensus 86 ~~~~Ifsgsss~~LA~~IA~~L~ 108 (300)
..-.|+.++.+..-|+.|++.|+
T Consensus 43 ~~t~I~y~~~~~~~A~~la~~l~ 65 (90)
T PF13399_consen 43 ETTTIYYGPGDEAAARELAAALG 65 (90)
T ss_pred CCEEEEECCCCHHHHHHHHHHCC
Confidence 55567778889999999999993
No 153
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=20.63 E-value=1.8e+02 Score=27.97 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=29.9
Q ss_pred CCeEEEEeecCCchhHHHHHHHHHhcccCCCceEEEEeccCCCccc
Q 022268 137 GQHVAFLASFSSPGKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTS 182 (300)
Q Consensus 137 G~dV~IIqS~~~pd~lmELLllidAlrragAk~ItlVIPYf~YARQ 182 (300)
|-.|.+.-++...+++-|+.-+++-+++.|++.+. +.|+++|.|.
T Consensus 162 G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~-i~p~~~~~~a 206 (318)
T TIGR03470 162 GFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMT-ISPGYAYEKA 206 (318)
T ss_pred CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEE-EecCcccccc
Confidence 44555433333445666666666777888998765 5799999875
No 154
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=20.47 E-value=5.3e+02 Score=24.55 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=23.3
Q ss_pred CCeEEEEeecCCch-----hHHHHHHHHHhcccCC---CceEEEEeccC
Q 022268 137 GQHVAFLASFSSPG-----KIFEQLSVIYALPKLF---VSSFTLVLPFF 177 (300)
Q Consensus 137 G~dV~IIqS~~~pd-----~lmELLllidAlrrag---Ak~ItlVIPYf 177 (300)
|..|+|+..++.++ .+.+|+--++...+.| .+--..++|..
T Consensus 19 gp~v~i~agvHGdE~~G~~~~~~L~~~l~~~~~~~~~~l~g~v~~vP~~ 67 (298)
T cd06253 19 EKRICIVGGIHGDELQGLYICSLLIRFLKELEKRGPLKLNGIVDVIPSV 67 (298)
T ss_pred CcEEEEEccCccchHHHHHHHHHHHHHHhhhhcccccccCceEEEEeCc
Confidence 67788888887763 3455555555543221 13345566664
No 155
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=20.33 E-value=1.2e+02 Score=26.82 Aligned_cols=41 Identities=15% Similarity=-0.037 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCCCCeEEEeCCcccHHHHHHHHhhCCCccccccccccCCceeeeee
Q 022268 242 LLLNRLQQLPDSDNISIAFPDDGAWKRFHKQLQHFPMVLRMPYVDLYCVHHAPAYK 297 (300)
Q Consensus 242 lL~~~l~~~~~~~n~vIVSPD~GA~kRA~~~A~~l~~vv~~~~~~~lg~~~a~~~k 297 (300)
.+++++.. .+-..||.|..++.--|..+| ..||++..+++|
T Consensus 44 ~~~~~~~~---~~id~Iv~iea~Gi~~a~~vA------------~~Lgvp~v~vRK 84 (179)
T COG0503 44 ELAERYKD---DGIDKIVTIEARGIPLAAAVA------------LELGVPFVPVRK 84 (179)
T ss_pred HHHHHhcc---cCCCEEEEEccccchhHHHHH------------HHhCCCEEEEEe
Confidence 44444443 245689999999999999999 666777777766
Done!