BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022271
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6J|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
pdb|2Z6J|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
Length = 332
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 119/276 (43%), Gaps = 47/276 (17%)
Query: 55 IRKTRSLTERPFGVGVVLAFPHNENI-KAILSEKVAVLQVSWG---EYSEELVLEAHSAG 110
I K +SLT++PFGV ++L P E+I ++ E V V+ G +Y E H AG
Sbjct: 55 IDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAGNPSKYMERF----HEAG 110
Query: 111 VKVVP----------------------------QDGLISLLPMVVDLIGDRDIPIIAAGG 142
+ V+P G ++ + +V + IP+IAAGG
Sbjct: 111 IIVIPVVPSVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGG 170
Query: 143 IVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGA 202
I D G A LGA+ + +GTRFV ++ES AHP YK K++ K D A+ G
Sbjct: 171 IADGEGAAAGFMLGAEAVQVGTRFVVAKESNAHPNYKEKIL---KARDIDTTISAQHFGH 227
Query: 203 PHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMV 262
R ++ +++ + P +E AG + GD+D
Sbjct: 228 AVRAIKNQLTRDFELAEKDAFKQEDP--------DLEIFEQMGAGALAKAVVHGDVDGGS 279
Query: 263 MFAGEGVGLIREILPAGEVVKQLVEGAQLLVHTKFS 298
+ AG+ GL+ + A E++K L GA + + S
Sbjct: 280 VMAGQIAGLVSKEETAEEILKDLYYGAAKKIQEEAS 315
>pdb|3BO9|A Chain A, Crystal Structure Of Putative Nitroalkan Dioxygenase
(Tm0800) From Thermotoga Maritima At 2.71 A Resolution
pdb|3BO9|B Chain B, Crystal Structure Of Putative Nitroalkan Dioxygenase
(Tm0800) From Thermotoga Maritima At 2.71 A Resolution
Length = 326
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 117/269 (43%), Gaps = 52/269 (19%)
Query: 48 PDYLRDLIRKTRSLTERPFGVGVVLAFP-HNENIKAILSEKVAVLQVSWGEYSEELVLEA 106
PD LR I + R T++PFGV ++L P ++ +K + EKV V+ G ++ + E
Sbjct: 62 PDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAGNPTK-YIREL 120
Query: 107 HSAGVKVVP----------------------------QDGLISLLPMVVDLIGDRDIPII 138
G KV+P G ++ +V + +IP+I
Sbjct: 121 KENGTKVIPVVASDSLARXVERAGADAVIAEGXESGGHIGEVTTFVLVNKVSRSVNIPVI 180
Query: 139 AAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRAR 198
AAGGI D RG AA +LGA+ + GTRFVAS ES HP YK K+V K D
Sbjct: 181 AAGGIADGRGXAAAFALGAEAVQXGTRFVASVESDVHPVYKEKIV---KASIRDTVVTGA 237
Query: 199 WPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDI 258
G P RVL+TPF E E P L G++ GD+
Sbjct: 238 KLGHPARVLRTPFARKI-----QEXEFENPXQAE----------EXLVGSLRRAVVEGDL 282
Query: 259 DSMVMFAGEGVGLIREILPAGEVVKQLVE 287
+ G+ GLI EI P VKQ++E
Sbjct: 283 ERGSFXVGQSAGLIDEIKP----VKQIIE 307
>pdb|2GJL|A Chain A, Crystal Structure Of 2-Nitropropane Dioxygenase
pdb|2GJN|A Chain A, Crystal Structure Of 2-Nitropropane Dioxygenase Complexed
With Fmn And Substrate
Length = 328
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 121/291 (41%), Gaps = 54/291 (18%)
Query: 47 APDYLRDLIRKTRSLTERPFGVGVVLA-----FPHNENIKAILSEKVAVLQVSWGEYSEE 101
+P+ L I + R LT+RPFGV + L P+ E AI+ + V++ + + E
Sbjct: 51 SPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGNDPGEH 110
Query: 102 LV-------------------LEAHSAGVKVVPQDGL-------------ISLLPMVVDL 129
+ L+A GV V DG + LLP +
Sbjct: 111 IAEFRRHGVKVIHKCTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR 170
Query: 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 189
+ +PIIA+GG D RG VAAL+LGA I +GTRF+A+ E HP K + D+
Sbjct: 171 L---RVPIIASGGFADGRGLVAALALGADAINMGTRFLATRECPIHPAVKAAIRAADE-R 226
Query: 190 YTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTV 249
TD+ R+ A RV + I A I + + G +
Sbjct: 227 STDLIMRSLRNTA--RVARNAISQEVLAIEARGGAGYADIA--ALVSGQRGR-------- 274
Query: 250 PNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLVHTKFSGL 300
V GD D + AG GLI + E+++ +VE A+ LV + G+
Sbjct: 275 -QVYQQGDTDLGIWSAGMVQGLIDDEPACAELLRDIVEQARQLVRQRLEGM 324
>pdb|2Z6I|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk)
pdb|2Z6I|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk)
Length = 332
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 118/279 (42%), Gaps = 53/279 (18%)
Query: 55 IRKTRSLTERPFGVGVVLAFPHNENI-KAILSEKVAVLQVSWG---EYSEELVLEAHSAG 110
I K +SLT++PFGV + L P E+I ++ E V V+ G +Y E H AG
Sbjct: 55 IDKIKSLTDKPFGVNIXLLSPFVEDIVDLVIEEGVKVVTTGAGNPSKYXERF----HEAG 110
Query: 111 VKVVP----------------------------QDGLISLLPMVVDLIGDRDIPIIAAGG 142
+ V+P G ++ +V + IP+IAAGG
Sbjct: 111 IIVIPVVPSVALAKRXEKIGADAVIAEGXEAGGHIGKLTTXTLVRQVATAISIPVIAAGG 170
Query: 143 IVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV---EMDKTEYTDVFGRARW 199
I D G A LGA+ + +GTRFV ++ES AHP YK K++ ++D T FG A
Sbjct: 171 IADGEGAAAGFXLGAEAVQVGTRFVVAKESNAHPNYKEKILKARDIDTTISAQHFGHA-- 228
Query: 200 PGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDID 259
KN + E+ + + +E AG + GD+D
Sbjct: 229 ------------VRAIKNQLTRDFELAEKDAFKQEDPDLEIFEQXGAGALAKAVVHGDVD 276
Query: 260 SMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLVHTKFS 298
+ AG+ GL+ + A E++K L GA + + S
Sbjct: 277 GGSVXAGQIAGLVSKEETAEEILKDLYYGAAKKIQEEAS 315
>pdb|3BW4|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 177
GL+SLL V + + DIP++AAGGI+ A L+ GA LGT F+A++ES A
Sbjct: 195 GLLSLLAQVREAV---DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDESGAPGP 251
Query: 178 YKRKLVE--MDKTEYTDVFGRARWPGAPHRVLQTPFF-SNWKNIPAHENEVNQPIIGRST 234
+KR L + +T T F G P R L F + PA +V
Sbjct: 252 HKRALTDPLFARTRLTRAF-----TGRPARSLVNRFLREHGPYAPAAYPDV--------- 297
Query: 235 IHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLV 286
H + + + A GD M ++AG+G + RE LPAG +V+ L
Sbjct: 298 -HHLTSPLRKAA------AKAGDAQGMALYAGQGHRMARE-LPAGRLVEVLA 341
>pdb|3BW2|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 177
GL+SLL V + + DIP++AAGGI+ A L+ GA LGT F+A++ES A
Sbjct: 195 GLLSLLAQVREAV---DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDESGAPGP 251
Query: 178 YKRKLVE--MDKTEYTDVFGRARWPGAPHRVLQTPFF-SNWKNIPAHENEVNQPIIGRST 234
+KR L + +T T F G P R L F + PA +V
Sbjct: 252 HKRALTDPLFARTRLTRAF-----TGRPARSLVNRFLREHGPYAPAAYPDV--------- 297
Query: 235 IHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLV 286
H + + + A GD M ++AG+G + RE LPAG +V+ L
Sbjct: 298 -HHLTSPLRKAA------AKAGDAQGMALWAGQGHRMARE-LPAGRLVEVLA 341
>pdb|3BW3|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 177
GL+SLL V + + DIP++AAGGI+ A L+ GA LGT F+A++ES A
Sbjct: 195 GLLSLLAQVREAV---DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDESGAPGP 251
Query: 178 YKRKLVE--MDKTEYTDVFGRARWPGAPHRVLQTPFF-SNWKNIPAHENEVNQPIIGRST 234
+KR L + +T T F G P R L F + PA +V
Sbjct: 252 HKRALTDPLFARTRLTRAF-----TGRPARSLVNRFLREHGPYAPAAYPDV--------- 297
Query: 235 IHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLV 286
H + + + A GD M ++AG+G + RE LPAG +V+ L
Sbjct: 298 -HHLTSPLRKAA------AKAGDAQGMALWAGQGHRMARE-LPAGRLVEVLA 341
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
D+PIIA GGI + V AL+ GA+ + +G+ F +EE+
Sbjct: 340 DVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEA 378
>pdb|3O6Y|X Chain X, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
pdb|3UD6|A Chain A, Structural Analyses Of Covalent Enzyme-Substrate Analogue
Complexes Reveal Strengths And Limitations Of De Novo
Enzyme Design
Length = 258
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 104/249 (41%), Gaps = 49/249 (19%)
Query: 60 SLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG--------EYSEELVLEAHSAGV 111
SL ER +L F + NI AI++ + + WG EY++ +E ++ G+
Sbjct: 32 SLNER------ILEF-NKRNITAIIA--TYMRKSPWGLDVERDPIEYAK--FMERYAVGL 80
Query: 112 KVVPQ----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167
+ + +G L + + IPI+ A IV A +LGA + L + +
Sbjct: 81 SICTEEKYANGSYETLRKIASSVS---IPILMADFIVKESQIDDAYNLGADTVPLIVKIL 137
Query: 168 ASEESYAHPEYKRK-----LVEMDKTEYTDVFGR--ARWPGAPHRVLQTPFFSNWKNIPA 220
E + EY R +++++ D+ R AR+ G R +W+ +
Sbjct: 138 TERELESLLEYARSYGMEPIIKINDENDLDIALRIGARFIGICSR--------DWETLEI 189
Query: 221 HENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGE 280
N+ NQ R I I + ++A T ++ +I+ + +I ++ E
Sbjct: 190 --NKENQ----RKLISMIPSNVVKVAST--GISERNEIEELRKLGVNAFSIISSLMRNPE 241
Query: 281 VVKQLVEGA 289
+K+L+EG+
Sbjct: 242 KIKELIEGS 250
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 126 VVDLIGDRD---------IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
V+D++ +R+ IP+ + GGIV AL++GA I LG F EES
Sbjct: 335 VIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEES 390
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 126 VVDLIGDRD---------IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
V+D++ +R+ IP+ + GGIV AL++GA I LG F EES
Sbjct: 335 VIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEES 390
>pdb|2QR6|A Chain A, Crystal Structure Of Imp DehydrogenaseGMP REDUCTASE-Like
Protein (Np_599840.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 1.50 A Resolution
Length = 393
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 14/77 (18%)
Query: 127 VDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES----------YAHP 176
+D G R + IIA G I ++ V A++ GA + LG+ +EE+ AHP
Sbjct: 270 LDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEEAAGKGYFWPAVAAHP 329
Query: 177 EYKRKLVEMDKTEYTDV 193
+ R +V TE D+
Sbjct: 330 RFPRGVV----TESVDL 342
>pdb|3NXF|A Chain A, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
Length = 258
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 23/162 (14%)
Query: 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK-----LVEMDKTE 189
IPI+ A IV A +LGA + L + + E + EY R ++ ++
Sbjct: 105 IPILMADFIVKESQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIXINDEN 164
Query: 190 YTDVFGR--ARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAG 247
D+ R AR+ G R +W+ + N+ NQ R I I + ++A
Sbjct: 165 DLDIALRIGARFIGICSR--------DWETLEI--NKENQ----RKLISMIPSNVVKVAS 210
Query: 248 TVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGA 289
T ++ +I+ + +I ++ E +K+L+EG+
Sbjct: 211 T--GISERNEIEELRKLGVNAFSIISSLMRNPEKIKELIEGS 250
>pdb|1PVN|A Chain A, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|B Chain B, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|C Chain C, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|D Chain D, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
Length = 376
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 126 VVDLIGDRD---------IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
V+D++ +R+ IP+ + GGIV AL++GA I LG F EES
Sbjct: 208 VIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEES 263
>pdb|1LRT|A Chain A, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|B Chain B, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|C Chain C, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|D Chain D, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
Length = 376
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 126 VVDLIGDRD---------IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
V+D++ +R+ IP+ + GGIV AL++GA I LG F EES
Sbjct: 208 VIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEES 263
>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 114 VPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
VPQ I+ + V + + +I IIA GGI + V A++ GA + +G F ++ES
Sbjct: 239 VPQ---ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKES 294
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
Query: 80 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKV-----------------VPQDGLISL 122
IK+ ++ V V V E ++EL+ E + G+KV VPQ I
Sbjct: 179 IKSKMNIDVIVGNVVTEEATKELI-ENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEK 237
Query: 123 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 177
V G IPIIA GGI + AL++GA + +G+ +EES E
Sbjct: 238 CSSVASKFG---IPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKE 289
>pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions
Length = 311
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 123 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182
L ++ + D DIPII GG+ +A+ + GA + +GT A + + P+ KL
Sbjct: 230 LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA--DPFVCPKIIDKL 287
Query: 183 VEM 185
E+
Sbjct: 288 PEL 290
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
+PIIA GGI V AL+LGA + +G+ A+ E+
Sbjct: 359 VPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEA 396
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 177
IP+IA GGI + V AL+ GA + LG+ F ES E
Sbjct: 360 IPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETE 402
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 21/117 (17%)
Query: 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKV-----------------VPQDGLI 120
+ IK+ ++ V V V E ++EL+ E + G+KV VPQ I
Sbjct: 138 KEIKSKMNIDVIVGNVVTEEATKELI-ENGADGIKVGIGPGSICTTRIVAGVGVPQITAI 196
Query: 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 177
V G IPIIA GGI + AL++GA + +G+ +EES E
Sbjct: 197 EKCSSVASKFG---IPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKE 250
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 177
IP+IA GGI + V AL+ GA + LG+ F ES E
Sbjct: 360 IPVIADGGIKYSGDXVKALAAGAHVVXLGSXFAGVAESPGETE 402
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
+P+IA GGI + AL+LGA + +G+ A+ E+
Sbjct: 359 VPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEA 396
>pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|1YPF|B Chain B, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|2A1Y|A Chain A, Crystal Structure Of Guac-Gmp Complex From Bacillus
Anthracis At 2.26 A Resolution
Length = 336
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 136 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFG 195
PIIA GGI ++ GA + +G+ F EES + +E D Y + FG
Sbjct: 212 PIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPG------ETIEKDGKLYKEYFG 265
Query: 196 RA 197
A
Sbjct: 266 SA 267
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
+P+IA GGI + AL+LGA + +G+ A+ E+
Sbjct: 359 VPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEA 396
>pdb|2G29|A Chain A, Crystal Structure Of The Periplasmic Nitrate-binding
Protein Nrta From Synechocystis Pcc 6803
Length = 417
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 18/79 (22%)
Query: 92 QVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY-- 149
Q SWG + LVL + S G+ DG L PM +I G + D +
Sbjct: 70 QASWGTTRDNLVLGSASGGI-----DGAHILTPMPY---------LITMGTVTDGKPTPM 115
Query: 150 --VAALSLGAQGICLGTRF 166
+A L++ QGI LG +
Sbjct: 116 YILARLNVNGQGIQLGNNY 134
>pdb|2YLN|A Chain A, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Closed Conformation
pdb|3ZSF|A Chain A, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|B Chain B, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|C Chain C, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|D Chain D, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|E Chain E, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|F Chain F, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|G Chain G, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|H Chain H, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
Length = 283
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 69 GVVLAFPHNENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMV 126
G VL ++ NIK+I K V Q Y E+ A +AG ++VP DGL L ++
Sbjct: 145 GAVLVAHNDSNIKSIADIKGVKTAQSLTSNYGEK----AKAAGAQLVPVDGLAQSLTLI 199
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 25/120 (20%)
Query: 44 DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103
+WEA +LRDL +PH +K +LS + A ++ G ++ ++
Sbjct: 213 NWEALRWLRDL-------------------WPHKLLVKGLLSAEDADRCIAEG--ADGVI 251
Query: 104 LEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163
L H G ++ D IS + ++ + P++ G V AL+LGA+ + LG
Sbjct: 252 LSNH-GGRQL---DCAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLG 307
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 25/120 (20%)
Query: 44 DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103
+WEA +LRDL +PH +K +LS + A ++ G ++ ++
Sbjct: 213 NWEALRWLRDL-------------------WPHKLLVKGLLSAEDADRCIAEG--ADGVI 251
Query: 104 LEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163
L H G ++ D IS + ++ + P++ G V AL+LGA+ + LG
Sbjct: 252 LSNH-GGRQL---DCAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLG 307
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Query: 114 VPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 173
VPQ I+ + MV D + + +IA GGI + V A++ GA + LG ++E+
Sbjct: 311 VPQ---ITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAP 367
Query: 174 AHPEYKRKLVEMDKTEYTDVFGR----ARWPGAPHRVLQTPFFSNWKNIP 219
K V ++ +Y G A G R Q + K +P
Sbjct: 368 G------KEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVP 411
>pdb|2WSU|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|B Chain B, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|C Chain C, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|D Chain D, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSV|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Lactose
pdb|2WT0|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With N-Acetyl-Lactosamine
pdb|2WT1|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Lacto-N-Neo-Tetraose
pdb|2WT2|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Tri(N-Acetyl-Lactosamine)
pdb|2WT2|B Chain B, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Tri(N-Acetyl-Lactosamine)
Length = 343
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 177 EYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSN 214
+++ +L E+D+ +Y +FG H+V TP FS
Sbjct: 295 QFQYRLKELDQIKYVHMFGHVVQTHLEHQVPDTPVFST 332
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES---YAHPEYKR 180
IP IA GGI + AL+LGA + +G + ES Y + E KR
Sbjct: 385 IPCIADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKR 433
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES---YAHPEYKR 180
IP IA GGI + AL+LGA + +G + ES Y + E KR
Sbjct: 385 IPCIADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKR 433
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 114 VPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
VPQ IS + V + +P+IA GGI + A+ GA + +G+ F +EE+
Sbjct: 335 VPQ---ISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEA 390
>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae Complexed With Imp And Mycophenolic Acid
Length = 496
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 114 VPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
VPQ I+ + + + IP+IA GGI + A++ GA + +G+ F +EE+
Sbjct: 317 VPQ---ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVXVGSXFAGTEEA 372
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 114 VPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
VPQ IS + V + +P+IA GGI + A+ GA + +G+ F +EE+
Sbjct: 315 VPQ---ISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEA 370
>pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
pdb|4FEZ|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
Length = 388
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 114 VPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
VPQ I+ + + + IP+IA GGI + A++ GA + +G+ F +EE+
Sbjct: 216 VPQ---ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEA 271
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 87 KVAVLQVSWGEYS---EELVLEAHSAGV-KVVPQDGLISLLPMVVDLIGDRDIPIIAAGG 142
K++ W S + ++++++ G+ +V+ D + ++ + R+ + GG
Sbjct: 185 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 244
Query: 143 IVDARGYVAALSLGA 157
++D++GY +G+
Sbjct: 245 LIDSKGYGVGTPMGS 259
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 87 KVAVLQVSWGEYS---EELVLEAHSAGV-KVVPQDGLISLLPMVVDLIGDRDIPIIAAGG 142
K++ W S + ++++++ G+ +V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 143 IVDARGYVAALSLGA 157
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 87 KVAVLQVSWGEYS---EELVLEAHSAGV-KVVPQDGLISLLPMVVDLIGDRDIPIIAAGG 142
K++ W S + ++++++ G+ +V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 143 IVDARGYVAALSLGA 157
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 87 KVAVLQVSWGEYS---EELVLEAHSAGV-KVVPQDGLISLLPMVVDLIGDRDIPIIAAGG 142
K++ W S + ++++++ G+ +V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 143 IVDARGYVAALSLGA 157
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 87 KVAVLQVSWGEYS---EELVLEAHSAGV-KVVPQDGLISLLPMVVDLIGDRDIPIIAAGG 142
K++ W S + ++++++ G+ +V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 143 IVDARGYVAALSLGA 157
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 87 KVAVLQVSWGEYS---EELVLEAHSAGV-KVVPQDGLISLLPMVVDLIGDRDIPIIAAGG 142
K++ W S + ++++++ G+ +V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 143 IVDARGYVAALSLGA 157
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|4FO4|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4FO4|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4HLV|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4HLV|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4IX2|A Chain A, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|B Chain B, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|C Chain C, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|D Chain D, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
Length = 366
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 114 VPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
VPQ I+ + + + IP+IA GGI + A++ GA + +G+ F +EE+
Sbjct: 194 VPQ---ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEA 249
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 87 KVAVLQVSWGEYS---EELVLEAHSAGV-KVVPQDGLISLLPMVVDLIGDRDIPIIAAGG 142
K++ W S + ++++++ G+ +V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 143 IVDARGYVAALSLGA 157
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 87 KVAVLQVSWGEYS---EELVLEAHSAGV-KVVPQDGLISLLPMVVDLIGDRDIPIIAAGG 142
K++ W S + ++++++ G+ +V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 143 IVDARGYVAALSLGA 157
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 87 KVAVLQVSWGEYS---EELVLEAHSAGV-KVVPQDGLISLLPMVVDLIGDRDIPIIAAGG 142
K++ W S + ++++++ G+ +V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 143 IVDARGYVAALSLGA 157
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 87 KVAVLQVSWGEYS---EELVLEAHSAGV-KVVPQDGLISLLPMVVDLIGDRDIPIIAAGG 142
K++ W S + ++++++ G+ +V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 143 IVDARGYVAALSLGA 157
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 87 KVAVLQVSWGEYS---EELVLEAHSAGV-KVVPQDGLISLLPMVVDLIGDRDIPIIAAGG 142
K++ W S + ++++++ G+ +V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 143 IVDARGYVAALSLGA 157
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 87 KVAVLQVSWGEYS---EELVLEAHSAGV-KVVPQDGLISLLPMVVDLIGDRDIPIIAAGG 142
K++ W S + ++++++ G+ +V+ D + ++ + R+ + GG
Sbjct: 150 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 209
Query: 143 IVDARGYVAALSLGA 157
++D++GY +G+
Sbjct: 210 LIDSKGYGVGTPMGS 224
>pdb|2H6R|A Chain A, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|B Chain B, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|C Chain C, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|D Chain D, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|E Chain E, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|F Chain F, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|G Chain G, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|H Chain H, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
Length = 219
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 132 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170
++D+ ++ GI AAL LGA+G+ L + V ++
Sbjct: 168 NKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAK 206
>pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|B Chain B, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|C Chain C, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|D Chain D, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|E Chain E, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|F Chain F, Structure Of The Synthase Subunit Of Plp Synthase
Length = 325
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 100 EELVLEAHSAG--VKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 157
+ELV EA G V+V+ + + LP+V AAGG+ + LGA
Sbjct: 211 DELVAEAKQLGAPVEVLREIKRLGRLPVVN----------FAAGGVTTPADAALMMHLGA 260
Query: 158 QGICLGTRFVASEESYAHPE-YKRKLVEMDKTEYTD 192
G+ +G+ SE +PE Y R +VE T Y D
Sbjct: 261 DGVFVGSGIFKSE----NPEKYARAIVEA-TTHYED 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,968,368
Number of Sequences: 62578
Number of extensions: 365640
Number of successful extensions: 1111
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1048
Number of HSP's gapped (non-prelim): 95
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)