Query 022271
Match_columns 300
No_of_seqs 264 out of 1778
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:20:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03060 NMO: Nitronate monoox 100.0 5.1E-57 1.1E-61 421.3 23.6 266 2-288 3-330 (330)
2 TIGR03151 enACPred_II putative 100.0 4.2E-55 9E-60 403.9 26.7 270 2-295 3-306 (307)
3 COG2070 Dioxygenases related t 100.0 3.9E-51 8.4E-56 380.3 22.4 276 2-297 6-333 (336)
4 cd04743 NPD_PKS 2-Nitropropane 100.0 6.9E-47 1.5E-51 346.8 19.6 202 9-219 1-257 (320)
5 cd04742 NPD_FabD 2-Nitropropan 100.0 1.4E-40 3E-45 314.7 19.7 212 2-215 5-306 (418)
6 TIGR02814 pfaD_fam PfaD family 100.0 1.7E-37 3.7E-42 295.3 19.2 187 2-189 10-279 (444)
7 cd04730 NPD_like 2-Nitropropan 99.9 1.2E-23 2.6E-28 187.4 22.9 189 10-207 2-226 (236)
8 cd00381 IMPDH IMPDH: The catal 99.9 1.2E-24 2.5E-29 202.7 16.3 171 3-180 27-243 (325)
9 PRK08649 inosine 5-monophospha 99.9 8E-24 1.7E-28 199.2 16.5 174 4-178 41-300 (368)
10 PRK06843 inosine 5-monophospha 99.9 5.3E-23 1.2E-27 194.6 19.3 173 2-177 34-299 (404)
11 TIGR01304 IMP_DH_rel_2 IMP deh 99.8 4.1E-20 8.9E-25 173.8 13.7 175 5-180 39-301 (369)
12 PLN02274 inosine-5'-monophosph 99.8 4.2E-19 9.2E-24 173.8 17.4 173 2-180 46-397 (505)
13 cd02808 GltS_FMN Glutamate syn 99.8 9.8E-19 2.1E-23 166.9 13.9 170 3-173 70-324 (392)
14 cd02809 alpha_hydroxyacid_oxid 99.8 5.2E-18 1.1E-22 156.6 15.9 160 4-172 56-265 (299)
15 PTZ00314 inosine-5'-monophosph 99.8 4.3E-18 9.3E-23 166.6 15.9 55 3-60 43-97 (495)
16 PF00478 IMPDH: IMP dehydrogen 99.8 2.7E-17 5.8E-22 153.2 17.8 168 4-175 31-252 (352)
17 cd02811 IDI-2_FMN Isopentenyl- 99.7 1.2E-16 2.7E-21 149.1 16.1 160 6-171 46-292 (326)
18 PRK05437 isopentenyl pyrophosp 99.7 1.4E-16 3E-21 150.0 15.1 155 9-169 59-296 (352)
19 PRK05567 inosine 5'-monophosph 99.7 6.6E-16 1.4E-20 151.5 18.4 59 118-176 315-373 (486)
20 TIGR01305 GMP_reduct_1 guanosi 99.7 1.3E-15 2.9E-20 139.7 17.3 167 7-176 42-254 (343)
21 PRK05096 guanosine 5'-monophos 99.7 1.2E-15 2.7E-20 139.9 16.0 164 10-176 46-255 (346)
22 cd02911 arch_FMN Archeal FMN-b 99.6 9.5E-15 2.1E-19 130.2 15.4 146 12-165 1-222 (233)
23 TIGR02151 IPP_isom_2 isopenten 99.6 5.5E-15 1.2E-19 138.4 14.2 160 5-170 46-290 (333)
24 COG4981 Enoyl reductase domain 99.6 1.3E-14 2.9E-19 138.2 15.8 184 2-189 27-279 (717)
25 PRK07807 inosine 5-monophospha 99.6 1.7E-14 3.7E-19 140.6 14.4 90 119-213 315-421 (479)
26 TIGR01302 IMP_dehydrog inosine 99.5 4.6E-13 1E-17 130.2 16.7 57 119-175 312-368 (450)
27 TIGR01306 GMP_reduct_2 guanosi 99.5 1E-12 2.2E-17 121.5 15.9 158 8-175 32-239 (321)
28 cd02922 FCB2_FMN Flavocytochro 99.5 9.3E-13 2E-17 123.5 15.8 175 4-184 56-321 (344)
29 PRK10415 tRNA-dihydrouridine s 99.5 6E-13 1.3E-17 124.1 14.4 159 6-170 5-231 (321)
30 TIGR00737 nifR3_yhdG putative 99.5 6.4E-13 1.4E-17 123.9 13.4 158 7-170 4-229 (319)
31 PRK05458 guanosine 5'-monophos 99.5 1.3E-12 2.9E-17 121.1 15.1 158 8-175 35-242 (326)
32 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 2.7E-12 5.8E-17 125.2 16.5 56 120-175 314-369 (475)
33 PF04131 NanE: Putative N-acet 99.4 8.6E-12 1.9E-16 105.9 12.7 143 25-182 2-190 (192)
34 PRK10550 tRNA-dihydrouridine s 99.4 7.4E-12 1.6E-16 116.2 12.6 155 11-170 1-231 (312)
35 PRK01130 N-acetylmannosamine-6 99.3 6.9E-11 1.5E-15 104.5 16.7 133 25-169 26-208 (221)
36 PLN02535 glycolate oxidase 99.3 3.4E-11 7.4E-16 113.4 11.3 116 53-185 213-329 (364)
37 KOG2550 IMP dehydrogenase/GMP 99.3 8.5E-11 1.8E-15 109.4 13.5 55 121-175 341-395 (503)
38 PLN02493 probable peroxisomal 99.3 3.1E-11 6.8E-16 113.5 10.8 115 52-184 213-329 (367)
39 COG3010 NanE Putative N-acetyl 99.3 2.2E-10 4.8E-15 97.9 14.5 158 12-184 23-228 (229)
40 TIGR00736 nifR3_rel_arch TIM-b 99.2 2.9E-10 6.2E-15 100.9 15.6 145 18-168 1-225 (231)
41 KOG0538 Glycolate oxidase [Ene 99.2 4.3E-11 9.3E-16 107.7 9.3 121 46-184 206-328 (363)
42 PLN02979 glycolate oxidase 99.2 7.6E-11 1.7E-15 110.2 11.1 115 52-184 212-328 (366)
43 TIGR00742 yjbN tRNA dihydrouri 99.2 1.9E-10 4.1E-15 107.1 13.2 154 12-170 2-230 (318)
44 cd04740 DHOD_1B_like Dihydroor 99.2 8.1E-10 1.8E-14 101.9 17.0 157 8-169 8-266 (296)
45 PF01645 Glu_synthase: Conserv 99.2 9.2E-11 2E-15 110.3 10.5 120 45-173 184-313 (368)
46 PRK11815 tRNA-dihydrouridine s 99.2 2.6E-10 5.6E-15 106.9 13.6 159 8-171 8-241 (333)
47 PF01207 Dus: Dihydrouridine s 99.2 6.8E-11 1.5E-15 109.8 9.0 151 14-169 1-219 (309)
48 PRK07107 inosine 5-monophospha 99.2 2.7E-10 5.9E-15 111.9 13.5 58 119-176 331-394 (502)
49 COG0042 tRNA-dihydrouridine sy 99.2 3.1E-10 6.8E-15 105.8 12.9 162 6-171 6-236 (323)
50 cd03332 LMO_FMN L-Lactate 2-mo 99.2 1.4E-10 3E-15 110.0 10.6 115 52-182 242-356 (383)
51 cd04737 LOX_like_FMN L-Lactate 99.2 1.9E-10 4.1E-15 108.1 11.1 113 53-183 211-325 (351)
52 PRK11197 lldD L-lactate dehydr 99.2 1.7E-10 3.6E-15 109.3 10.7 116 52-184 234-350 (381)
53 TIGR01037 pyrD_sub1_fam dihydr 99.1 1.8E-09 4E-14 99.7 16.5 168 9-183 10-281 (300)
54 PF01070 FMN_dh: FMN-dependent 99.1 2.1E-10 4.6E-15 108.3 9.5 170 4-182 50-328 (356)
55 cd02810 DHOD_DHPD_FMN Dihydroo 99.1 2.3E-09 5E-14 98.5 14.5 159 8-169 7-278 (289)
56 cd02940 DHPD_FMN Dihydropyrimi 99.1 1.3E-09 2.9E-14 100.7 12.3 123 46-169 151-287 (299)
57 cd02801 DUS_like_FMN Dihydrour 99.0 3.3E-09 7.2E-14 94.0 13.3 154 12-171 1-221 (231)
58 PRK07565 dihydroorotate dehydr 99.0 8.3E-09 1.8E-13 96.9 16.0 119 48-169 86-274 (334)
59 cd04736 MDH_FMN Mandelate dehy 99.0 3E-09 6.6E-14 100.1 10.8 113 51-182 224-337 (361)
60 TIGR02708 L_lactate_ox L-lacta 99.0 4.4E-09 9.5E-14 99.2 11.1 113 54-184 219-333 (367)
61 COG0167 PyrD Dihydroorotate de 98.9 2.7E-09 5.9E-14 98.2 8.4 144 25-169 112-276 (310)
62 PLN02495 oxidoreductase, actin 98.9 1.3E-08 2.8E-13 96.7 12.9 159 10-169 113-305 (385)
63 cd04729 NanE N-acetylmannosami 98.9 5E-08 1.1E-12 86.2 15.7 144 16-170 21-213 (219)
64 cd04739 DHOD_like Dihydroorota 98.9 4.9E-09 1.1E-13 98.1 9.3 154 10-169 99-272 (325)
65 PRK07259 dihydroorotate dehydr 98.9 1.3E-08 2.9E-13 94.0 12.1 153 10-169 91-269 (301)
66 PRK08318 dihydropyrimidine deh 98.9 1.3E-08 2.8E-13 98.4 10.5 157 10-168 99-287 (420)
67 CHL00200 trpA tryptophan synth 98.8 4.1E-08 8.8E-13 89.0 12.5 120 46-171 74-239 (263)
68 PLN02591 tryptophan synthase 98.8 5.7E-08 1.2E-12 87.4 12.1 119 46-170 61-225 (250)
69 TIGR01036 pyrD_sub2 dihydrooro 98.8 8.1E-09 1.8E-13 96.9 6.8 145 24-169 153-323 (335)
70 TIGR00262 trpA tryptophan synt 98.8 1.3E-07 2.8E-12 85.6 14.1 121 46-171 69-235 (256)
71 cd04741 DHOD_1A_like Dihydroor 98.8 1.9E-08 4.1E-13 92.9 8.7 121 47-168 141-277 (294)
72 cd04738 DHOD_2_like Dihydrooro 98.8 3E-08 6.4E-13 92.9 10.0 123 46-169 180-315 (327)
73 PLN02826 dihydroorotate dehydr 98.8 2.3E-08 5.1E-13 95.8 9.3 121 47-169 237-376 (409)
74 cd04727 pdxS PdxS is a subunit 98.8 2.8E-07 6.1E-12 83.1 14.7 157 21-184 14-247 (283)
75 PRK05286 dihydroorotate dehydr 98.7 1.5E-08 3.3E-13 95.5 6.6 123 46-169 189-324 (344)
76 PRK13111 trpA tryptophan synth 98.7 1.4E-07 3.1E-12 85.3 12.4 122 46-172 71-237 (258)
77 TIGR00343 pyridoxal 5'-phospha 98.7 3.6E-07 7.8E-12 82.5 14.4 143 21-170 16-235 (287)
78 cd00331 IGPS Indole-3-glycerol 98.7 5E-07 1.1E-11 79.6 15.0 144 23-169 32-207 (217)
79 cd04722 TIM_phosphate_binding 98.6 4.2E-07 9.2E-12 77.2 12.1 147 14-164 2-200 (200)
80 PRK02506 dihydroorotate dehydr 98.6 3.3E-08 7.2E-13 91.9 5.5 156 10-168 92-275 (310)
81 COG0159 TrpA Tryptophan syntha 98.6 4.9E-07 1.1E-11 81.3 11.9 125 46-175 76-245 (265)
82 COG0069 GltB Glutamate synthas 98.6 2.7E-07 5.8E-12 89.2 10.5 141 24-173 260-413 (485)
83 PRK00278 trpC indole-3-glycero 98.6 1.7E-06 3.6E-11 78.5 14.4 139 25-170 73-247 (260)
84 TIGR00007 phosphoribosylformim 98.6 1.2E-06 2.5E-11 77.9 13.0 48 119-169 177-224 (230)
85 cd04724 Tryptophan_synthase_al 98.6 5.9E-07 1.3E-11 80.6 11.1 119 48-173 61-225 (242)
86 COG1304 idi Isopentenyl diphos 98.6 8.2E-08 1.8E-12 90.5 5.6 67 117-184 257-323 (360)
87 PF01180 DHO_dh: Dihydroorotat 98.5 8.5E-08 1.8E-12 88.5 5.2 156 10-169 96-279 (295)
88 PF00290 Trp_syntA: Tryptophan 98.5 4.1E-07 8.9E-12 82.1 9.3 122 46-172 69-235 (259)
89 cd04728 ThiG Thiazole synthase 98.5 4E-06 8.6E-11 74.4 14.7 101 79-184 115-226 (248)
90 PRK00208 thiG thiazole synthas 98.5 5.4E-06 1.2E-10 73.6 14.4 132 46-184 73-226 (250)
91 PRK00043 thiE thiamine-phospha 98.5 4.1E-06 8.8E-11 73.1 13.4 135 26-169 25-194 (212)
92 PRK04180 pyridoxal biosynthesi 98.4 3.3E-06 7.2E-11 76.5 12.7 140 22-170 24-241 (293)
93 PRK13125 trpA tryptophan synth 98.4 2.1E-06 4.5E-11 77.2 10.9 113 53-169 64-220 (244)
94 cd04726 KGPDC_HPS 3-Keto-L-gul 98.4 6.6E-06 1.4E-10 71.4 13.7 112 53-168 42-191 (202)
95 cd00564 TMP_TenI Thiamine mono 98.4 9E-06 2E-10 69.6 14.3 135 26-169 16-184 (196)
96 PRK11750 gltB glutamate syntha 98.4 1.5E-06 3.3E-11 93.2 11.0 119 46-173 978-1106(1485)
97 cd00405 PRAI Phosphoribosylant 98.4 1.4E-05 3E-10 69.7 15.0 140 21-169 5-187 (203)
98 KOG2335 tRNA-dihydrouridine sy 98.4 6.4E-06 1.4E-10 76.4 13.1 123 32-169 113-239 (358)
99 TIGR03572 WbuZ glycosyl amidat 98.4 5.2E-06 1.1E-10 73.8 12.3 137 10-166 74-230 (232)
100 PRK08883 ribulose-phosphate 3- 98.4 6.1E-06 1.3E-10 73.0 12.4 114 54-169 48-201 (220)
101 PRK01033 imidazole glycerol ph 98.4 6.9E-06 1.5E-10 74.4 12.9 48 119-169 184-232 (258)
102 cd04732 HisA HisA. Phosphorib 98.3 1.4E-05 3.1E-10 70.9 14.4 49 119-170 178-226 (234)
103 PLN02334 ribulose-phosphate 3- 98.3 9.2E-06 2E-10 72.3 12.7 113 53-169 55-208 (229)
104 cd04731 HisF The cyclase subun 98.3 1E-05 2.2E-10 72.5 12.3 49 119-170 181-230 (243)
105 PRK00748 1-(5-phosphoribosyl)- 98.3 1.1E-05 2.4E-10 71.7 11.9 49 119-170 178-227 (233)
106 PRK04169 geranylgeranylglycery 98.3 2.3E-05 5.1E-10 69.7 13.7 154 11-171 10-221 (232)
107 cd00429 RPE Ribulose-5-phospha 98.3 1.3E-05 2.9E-10 69.7 11.7 115 53-169 47-200 (211)
108 TIGR01769 GGGP geranylgeranylg 98.2 6.2E-05 1.3E-09 65.8 15.6 134 26-163 15-205 (205)
109 PRK02083 imidazole glycerol ph 98.2 1.2E-05 2.6E-10 72.6 11.4 49 119-170 185-234 (253)
110 TIGR03128 RuMP_HxlA 3-hexulose 98.2 4.5E-05 9.8E-10 66.4 14.8 138 26-169 16-192 (206)
111 PRK14024 phosphoribosyl isomer 98.2 1.4E-05 3E-10 71.8 11.4 49 119-170 178-229 (241)
112 PRK06552 keto-hydroxyglutarate 98.2 5.7E-05 1.2E-09 66.5 14.9 133 26-169 29-189 (213)
113 PF05690 ThiG: Thiazole biosyn 98.2 4E-05 8.8E-10 67.4 13.3 133 46-184 73-226 (247)
114 TIGR00735 hisF imidazoleglycer 98.2 3E-05 6.5E-10 70.1 12.9 140 10-170 74-236 (254)
115 PRK13585 1-(5-phosphoribosyl)- 98.2 6.6E-05 1.4E-09 67.1 14.4 49 120-171 182-230 (241)
116 TIGR01163 rpe ribulose-phospha 98.2 3.4E-05 7.4E-10 67.2 12.1 143 25-169 14-199 (210)
117 cd02803 OYE_like_FMN_family Ol 98.1 1.7E-05 3.8E-10 74.0 10.7 114 50-170 193-318 (327)
118 CHL00162 thiG thiamin biosynth 98.1 0.00012 2.6E-09 65.2 14.6 88 78-170 128-225 (267)
119 COG0106 HisA Phosphoribosylfor 98.1 6.9E-05 1.5E-09 66.5 12.7 48 119-169 179-227 (241)
120 cd00452 KDPG_aldolase KDPG and 98.1 0.00016 3.4E-09 62.5 14.6 131 26-167 20-175 (190)
121 PRK09140 2-dehydro-3-deoxy-6-p 98.0 0.00016 3.5E-09 63.4 14.2 134 26-169 26-185 (206)
122 COG0214 SNZ1 Pyridoxine biosyn 98.0 6.6E-05 1.4E-09 65.8 11.5 62 119-186 194-257 (296)
123 COG0036 Rpe Pentose-5-phosphat 98.0 0.00018 4E-09 63.0 13.7 147 25-184 19-212 (220)
124 PRK13587 1-(5-phosphoribosyl)- 98.0 0.00037 7.9E-09 62.3 16.0 67 99-168 150-226 (234)
125 PRK04302 triosephosphate isome 98.0 8E-05 1.7E-09 66.0 11.5 115 55-169 48-208 (223)
126 PRK13523 NADPH dehydrogenase N 98.0 2.5E-05 5.5E-10 73.4 8.3 110 50-171 194-313 (337)
127 TIGR01768 GGGP-family geranylg 98.0 0.00027 5.9E-09 62.4 14.3 142 24-169 16-214 (223)
128 cd02932 OYE_YqiM_FMN Old yello 98.0 4.8E-05 1E-09 71.5 10.0 112 49-171 205-328 (336)
129 TIGR00693 thiE thiamine-phosph 97.9 0.00033 7.1E-09 60.5 14.0 134 26-169 17-186 (196)
130 TIGR00734 hisAF_rel hisA/hisF 97.9 3.3E-05 7.2E-10 68.4 7.6 67 99-168 143-218 (221)
131 cd04723 HisA_HisF Phosphoribos 97.9 0.00039 8.5E-09 62.0 14.1 69 99-170 148-225 (233)
132 PRK05581 ribulose-phosphate 3- 97.9 0.00022 4.7E-09 62.6 12.2 117 52-170 50-205 (220)
133 PRK09722 allulose-6-phosphate 97.9 0.00025 5.3E-09 63.1 12.3 114 54-169 50-203 (229)
134 PRK07695 transcriptional regul 97.9 0.00026 5.6E-09 61.6 12.3 46 120-169 138-183 (201)
135 PRK08745 ribulose-phosphate 3- 97.9 0.00034 7.4E-09 62.0 13.0 113 54-168 52-204 (223)
136 TIGR00735 hisF imidazoleglycer 97.8 4.3E-05 9.3E-10 69.0 7.2 69 99-170 32-110 (254)
137 cd02933 OYE_like_FMN Old yello 97.8 9.9E-05 2.1E-09 69.5 9.7 105 50-171 204-322 (338)
138 PF00977 His_biosynth: Histidi 97.8 0.00019 4.1E-09 63.9 11.0 66 99-167 149-224 (229)
139 PF00218 IGPS: Indole-3-glycer 97.8 0.00049 1.1E-08 62.1 13.7 143 24-171 70-246 (254)
140 PRK08005 epimerase; Validated 97.8 0.00035 7.6E-09 61.3 12.4 112 53-168 48-196 (210)
141 TIGR01182 eda Entner-Doudoroff 97.8 0.00069 1.5E-08 59.2 14.0 132 26-168 24-181 (204)
142 PRK14114 1-(5-phosphoribosyl)- 97.8 0.00032 7E-09 62.9 12.1 68 99-169 146-229 (241)
143 cd04734 OYE_like_3_FMN Old yel 97.8 0.00011 2.3E-09 69.4 9.4 119 49-171 192-323 (343)
144 cd02812 PcrB_like PcrB_like pr 97.8 0.00055 1.2E-08 60.4 12.6 61 107-169 145-210 (219)
145 PF01081 Aldolase: KDPG and KH 97.8 0.0005 1.1E-08 59.7 12.1 134 25-169 23-182 (196)
146 TIGR00259 thylakoid_BtpA membr 97.8 0.0022 4.7E-08 58.0 16.5 132 30-167 36-231 (257)
147 PRK11840 bifunctional sulfur c 97.8 0.0012 2.7E-08 61.1 15.1 86 79-169 189-284 (326)
148 PRK13307 bifunctional formalde 97.7 0.00065 1.4E-08 65.0 13.6 155 10-169 171-364 (391)
149 cd04735 OYE_like_4_FMN Old yel 97.7 9.4E-05 2E-09 70.0 7.3 121 50-187 196-331 (353)
150 cd04731 HisF The cyclase subun 97.7 0.00011 2.4E-09 65.8 7.2 48 119-169 59-106 (243)
151 PRK07028 bifunctional hexulose 97.7 0.00082 1.8E-08 65.3 13.7 124 27-169 73-196 (430)
152 PRK07114 keto-hydroxyglutarate 97.7 0.001 2.3E-08 58.8 12.9 134 26-169 31-194 (222)
153 PRK02083 imidazole glycerol ph 97.7 0.00012 2.7E-09 66.0 7.1 49 119-170 62-110 (253)
154 PF04481 DUF561: Protein of un 97.7 0.00087 1.9E-08 58.3 11.7 127 26-167 31-218 (242)
155 PRK07455 keto-hydroxyglutarate 97.6 0.0018 3.9E-08 55.8 13.9 134 25-168 27-185 (187)
156 PRK00748 1-(5-phosphoribosyl)- 97.6 0.00017 3.6E-09 64.0 7.5 49 119-170 62-110 (233)
157 PRK04128 1-(5-phosphoribosyl)- 97.6 0.002 4.2E-08 57.4 14.3 51 117-169 167-217 (228)
158 PRK06015 keto-hydroxyglutarate 97.6 0.0018 4E-08 56.4 13.7 131 26-167 20-176 (201)
159 PTZ00170 D-ribulose-5-phosphat 97.6 0.0011 2.3E-08 59.0 12.6 112 53-168 54-206 (228)
160 cd02931 ER_like_FMN Enoate red 97.6 0.0003 6.6E-09 67.3 9.6 124 49-186 202-352 (382)
161 PF00834 Ribul_P_3_epim: Ribul 97.6 0.00055 1.2E-08 59.8 10.4 113 53-167 47-198 (201)
162 PF03437 BtpA: BtpA family; I 97.6 0.0032 7E-08 56.8 15.4 148 30-184 37-250 (254)
163 cd04733 OYE_like_2_FMN Old yel 97.6 0.00025 5.3E-09 66.8 8.5 118 49-171 200-330 (338)
164 COG0135 TrpF Phosphoribosylant 97.6 0.0024 5.2E-08 55.9 13.8 134 21-165 8-185 (208)
165 PRK00507 deoxyribose-phosphate 97.6 0.00085 1.8E-08 59.4 11.1 99 47-163 104-208 (221)
166 PRK14024 phosphoribosyl isomer 97.6 0.00022 4.7E-09 64.0 7.4 70 99-171 34-112 (241)
167 KOG1606 Stationary phase-induc 97.6 0.00064 1.4E-08 58.8 9.7 60 120-185 196-257 (296)
168 COG2022 ThiG Uncharacterized e 97.5 0.0023 4.9E-08 56.3 12.9 90 77-171 120-219 (262)
169 cd00958 DhnA Class I fructose- 97.5 0.0018 3.9E-08 57.6 12.4 48 120-170 168-221 (235)
170 TIGR02129 hisA_euk phosphoribo 97.5 0.00048 1E-08 62.0 8.5 84 96-184 37-124 (253)
171 PRK06512 thiamine-phosphate py 97.5 0.0036 7.8E-08 55.4 13.7 136 25-170 29-199 (221)
172 PRK13586 1-(5-phosphoribosyl)- 97.5 0.0049 1.1E-07 55.0 14.6 65 99-167 148-222 (232)
173 PRK13957 indole-3-glycerol-pho 97.5 0.0044 9.5E-08 55.7 14.1 139 24-170 63-237 (247)
174 cd02930 DCR_FMN 2,4-dienoyl-Co 97.4 0.00056 1.2E-08 64.8 8.7 116 48-171 187-314 (353)
175 TIGR01919 hisA-trpF 1-(5-phosp 97.4 0.006 1.3E-07 54.8 14.9 68 99-169 151-231 (243)
176 KOG1436 Dihydroorotate dehydro 97.4 0.00019 4.1E-09 65.6 5.2 134 49-184 231-380 (398)
177 cd04732 HisA HisA. Phosphorib 97.4 0.00043 9.4E-09 61.4 7.3 60 119-186 61-120 (234)
178 PRK13585 1-(5-phosphoribosyl)- 97.4 0.00049 1.1E-08 61.4 7.5 68 99-169 34-111 (241)
179 PRK05718 keto-hydroxyglutarate 97.4 0.0049 1.1E-07 54.2 13.6 136 25-172 30-191 (212)
180 PRK04128 1-(5-phosphoribosyl)- 97.4 0.0005 1.1E-08 61.2 7.0 46 119-167 61-106 (228)
181 PF04309 G3P_antiterm: Glycero 97.4 0.0024 5.1E-08 54.4 10.6 115 49-168 31-174 (175)
182 PRK14057 epimerase; Provisiona 97.3 0.0051 1.1E-07 55.4 12.6 110 55-168 69-226 (254)
183 TIGR02708 L_lactate_ox L-lacta 97.2 0.0062 1.3E-07 57.8 13.2 149 4-163 72-256 (367)
184 COG1646 Predicted phosphate-bi 97.2 0.0036 7.8E-08 55.2 10.5 144 23-169 29-226 (240)
185 cd04747 OYE_like_5_FMN Old yel 97.2 0.0015 3.4E-08 62.0 8.9 116 50-186 196-345 (361)
186 PRK13802 bifunctional indole-3 97.2 0.0065 1.4E-07 62.2 13.8 149 25-182 73-257 (695)
187 COG0134 TrpC Indole-3-glycerol 97.2 0.0047 1E-07 55.5 11.3 140 25-171 69-244 (254)
188 PRK13587 1-(5-phosphoribosyl)- 97.2 0.0011 2.3E-08 59.3 7.2 69 99-170 33-112 (234)
189 COG1902 NemA NADH:flavin oxido 97.2 0.0041 8.9E-08 59.1 11.4 110 51-171 202-326 (363)
190 PF01884 PcrB: PcrB family; I 97.2 0.00045 9.8E-09 61.3 4.6 154 11-169 10-217 (230)
191 COG0107 HisF Imidazoleglycerol 97.2 0.0027 5.9E-08 55.8 9.3 62 119-185 187-249 (256)
192 cd02929 TMADH_HD_FMN Trimethyl 97.2 0.0023 5E-08 61.1 9.7 120 50-185 202-335 (370)
193 COG0352 ThiE Thiamine monophos 97.2 0.0049 1.1E-07 54.2 10.9 135 25-170 24-193 (211)
194 PRK02615 thiamine-phosphate py 97.2 0.0078 1.7E-07 56.8 13.0 46 120-169 283-328 (347)
195 PRK08255 salicylyl-CoA 5-hydro 97.2 0.0017 3.7E-08 67.6 9.2 111 50-171 603-725 (765)
196 cd04736 MDH_FMN Mandelate dehy 97.1 0.005 1.1E-07 58.3 11.4 147 4-162 56-263 (361)
197 PF02581 TMP-TENI: Thiamine mo 97.1 0.026 5.6E-07 48.1 15.0 128 24-165 14-179 (180)
198 TIGR03572 WbuZ glycosyl amidat 97.1 0.0014 2.9E-08 58.3 7.3 69 99-170 32-110 (232)
199 TIGR00007 phosphoribosylformim 97.1 0.0015 3.3E-08 57.8 7.5 80 99-186 30-119 (230)
200 cd04737 LOX_like_FMN L-Lactate 97.1 0.0075 1.6E-07 57.1 12.1 149 4-162 64-248 (351)
201 PRK01033 imidazole glycerol ph 97.1 0.0017 3.7E-08 58.8 7.2 69 98-169 31-109 (258)
202 PRK08091 ribulose-phosphate 3- 97.1 0.012 2.5E-07 52.4 12.1 111 54-168 61-212 (228)
203 PF00977 His_biosynth: Histidi 97.1 0.0011 2.4E-08 59.0 5.8 70 99-171 31-110 (229)
204 cd03332 LMO_FMN L-Lactate 2-mo 97.0 0.01 2.3E-07 56.7 12.5 149 4-163 77-281 (383)
205 PRK13958 N-(5'-phosphoribosyl) 97.0 0.028 6.1E-07 49.3 14.2 91 21-115 7-104 (207)
206 KOG4175 Tryptophan synthase al 97.0 0.018 3.9E-07 49.7 12.4 153 11-168 21-240 (268)
207 TIGR01919 hisA-trpF 1-(5-phosp 97.0 0.003 6.5E-08 56.8 7.7 69 98-169 32-109 (243)
208 PRK13813 orotidine 5'-phosphat 97.0 0.01 2.3E-07 52.0 11.0 115 53-169 45-198 (215)
209 PF00697 PRAI: N-(5'phosphorib 96.9 0.011 2.4E-07 51.3 10.7 137 21-167 5-180 (197)
210 cd04723 HisA_HisF Phosphoribos 96.9 0.0037 7.9E-08 55.8 7.9 68 99-169 37-113 (233)
211 COG0269 SgbH 3-hexulose-6-phos 96.9 0.028 6E-07 49.2 13.0 127 53-182 45-212 (217)
212 PLN02617 imidazole glycerol ph 96.9 0.026 5.6E-07 56.4 14.5 62 119-185 470-532 (538)
213 PLN02535 glycolate oxidase 96.9 0.015 3.3E-07 55.2 12.2 148 4-163 64-251 (364)
214 PLN02979 glycolate oxidase 96.8 0.023 5E-07 53.8 12.7 149 4-164 61-252 (366)
215 cd00945 Aldolase_Class_I Class 96.8 0.034 7.4E-07 47.3 13.0 44 119-163 158-201 (201)
216 PLN02460 indole-3-glycerol-pho 96.8 0.0099 2.1E-07 55.6 10.1 38 134-171 288-325 (338)
217 PRK08999 hypothetical protein; 96.8 0.019 4.1E-07 53.2 11.8 43 120-166 269-311 (312)
218 PLN02446 (5-phosphoribosyl)-5- 96.8 0.0058 1.3E-07 55.3 8.0 80 98-184 44-130 (262)
219 PRK05848 nicotinate-nucleotide 96.8 0.012 2.7E-07 53.7 10.2 95 50-169 167-263 (273)
220 TIGR01949 AroFGH_arch predicte 96.7 0.045 9.9E-07 49.5 13.6 48 120-170 181-234 (258)
221 PLN02493 probable peroxisomal 96.7 0.035 7.6E-07 52.8 13.0 148 4-163 62-252 (367)
222 COG0800 Eda 2-keto-3-deoxy-6-p 96.7 0.028 6E-07 49.1 11.1 133 26-167 29-185 (211)
223 COG0434 SgcQ Predicted TIM-bar 96.7 0.091 2E-06 46.6 14.3 133 28-167 40-236 (263)
224 PRK13306 ulaD 3-keto-L-gulonat 96.6 0.11 2.4E-06 45.8 15.0 115 53-170 45-198 (216)
225 PRK07226 fructose-bisphosphate 96.6 0.018 3.9E-07 52.4 10.2 47 120-169 185-237 (267)
226 PLN02446 (5-phosphoribosyl)-5- 96.6 0.0078 1.7E-07 54.5 7.5 65 99-166 165-241 (262)
227 cd00959 DeoC 2-deoxyribose-5-p 96.6 0.025 5.5E-07 49.2 10.4 94 48-160 100-200 (203)
228 TIGR00126 deoC deoxyribose-pho 96.6 0.022 4.8E-07 50.1 9.9 95 47-160 100-201 (211)
229 PRK13586 1-(5-phosphoribosyl)- 96.5 0.0079 1.7E-07 53.7 7.2 70 99-171 32-110 (232)
230 PRK11197 lldD L-lactate dehydr 96.5 0.041 8.8E-07 52.6 12.3 148 4-163 62-273 (381)
231 PRK14114 1-(5-phosphoribosyl)- 96.5 0.0078 1.7E-07 54.0 7.1 69 99-171 32-110 (241)
232 PRK09427 bifunctional indole-3 96.5 0.023 4.9E-07 55.6 10.6 114 54-171 101-246 (454)
233 PRK01222 N-(5'-phosphoribosyl) 96.5 0.22 4.8E-06 43.7 15.9 91 21-115 9-105 (210)
234 PRK07259 dihydroorotate dehydr 96.5 0.066 1.4E-06 49.4 13.1 141 9-162 11-188 (301)
235 PF00724 Oxidored_FMN: NADH:fl 96.4 0.011 2.4E-07 55.8 7.9 116 50-171 201-329 (341)
236 PRK12290 thiE thiamine-phospha 96.4 0.024 5.2E-07 54.8 10.1 135 26-169 221-398 (437)
237 PRK03512 thiamine-phosphate py 96.4 0.077 1.7E-06 46.6 12.6 46 122-170 148-193 (211)
238 PLN02898 HMP-P kinase/thiamin- 96.4 0.065 1.4E-06 53.2 13.5 133 25-169 310-481 (502)
239 TIGR01304 IMP_DH_rel_2 IMP deh 96.4 0.027 5.8E-07 53.6 10.0 63 99-165 144-218 (369)
240 KOG3111 D-ribulose-5-phosphate 96.4 0.062 1.3E-06 46.2 11.0 115 54-170 53-204 (224)
241 PRK08649 inosine 5-monophospha 96.3 0.028 6E-07 53.6 9.7 62 99-164 143-216 (368)
242 cd00331 IGPS Indole-3-glycerol 96.3 0.014 3.1E-07 51.2 7.3 66 100-168 34-106 (217)
243 PRK06806 fructose-bisphosphate 96.2 0.12 2.5E-06 47.6 13.0 47 119-169 188-236 (281)
244 PRK09427 bifunctional indole-3 96.2 0.27 5.9E-06 48.2 16.0 133 21-166 263-432 (454)
245 PLN02363 phosphoribosylanthran 96.1 0.26 5.6E-06 44.7 14.5 84 21-107 53-141 (256)
246 COG0106 HisA Phosphoribosylfor 96.1 0.022 4.7E-07 50.7 7.2 81 99-187 33-123 (241)
247 COG0107 HisF Imidazoleglycerol 96.1 0.019 4.1E-07 50.7 6.7 50 119-171 62-111 (256)
248 PRK07428 nicotinate-nucleotide 96.1 0.07 1.5E-06 49.1 10.8 94 51-169 182-277 (288)
249 TIGR00078 nadC nicotinate-nucl 95.8 0.14 2.9E-06 46.7 11.4 91 51-169 164-256 (265)
250 PRK08072 nicotinate-nucleotide 95.8 0.13 2.9E-06 47.0 11.4 89 51-167 174-264 (277)
251 PRK06801 hypothetical protein; 95.8 0.4 8.7E-06 44.1 14.4 56 119-182 191-248 (286)
252 PF01791 DeoC: DeoC/LacD famil 95.7 0.026 5.7E-07 50.3 6.2 44 120-166 178-233 (236)
253 TIGR02129 hisA_euk phosphoribo 95.6 0.017 3.6E-07 52.1 4.6 47 119-168 189-237 (253)
254 cd01568 QPRTase_NadC Quinolina 95.6 0.16 3.6E-06 46.2 11.2 93 51-169 167-261 (269)
255 cd01572 QPRTase Quinolinate ph 95.6 0.2 4.4E-06 45.6 11.7 90 52-169 169-260 (268)
256 COG0274 DeoC Deoxyribose-phosp 95.6 0.11 2.4E-06 45.7 9.4 95 47-158 107-207 (228)
257 PLN02617 imidazole glycerol ph 95.5 0.034 7.3E-07 55.6 7.0 71 96-170 267-361 (538)
258 PRK10605 N-ethylmaleimide redu 95.4 0.052 1.1E-06 51.6 7.4 52 123-184 284-336 (362)
259 TIGR01859 fruc_bis_ald_ fructo 95.3 0.49 1.1E-05 43.5 13.1 88 77-182 155-245 (282)
260 PRK05742 nicotinate-nucleotide 95.1 0.31 6.7E-06 44.6 11.4 70 76-169 198-267 (277)
261 cd01573 modD_like ModD; Quinol 95.1 0.18 3.9E-06 46.1 9.8 91 52-167 171-262 (272)
262 cd02072 Glm_B12_BD B12 binding 95.1 0.19 4.1E-06 40.6 8.8 78 85-162 25-114 (128)
263 PRK06852 aldolase; Validated 95.1 0.69 1.5E-05 42.9 13.5 149 9-169 38-271 (304)
264 TIGR00640 acid_CoA_mut_C methy 95.1 0.2 4.3E-06 40.7 8.8 80 85-165 28-115 (132)
265 PRK09517 multifunctional thiam 95.0 0.39 8.4E-06 50.2 13.0 48 121-169 153-200 (755)
266 PRK07998 gatY putative fructos 94.9 1.2 2.5E-05 41.0 14.5 56 120-182 188-244 (283)
267 PRK13957 indole-3-glycerol-pho 94.9 0.1 2.2E-06 47.0 7.4 67 99-168 63-136 (247)
268 COG1830 FbaB DhnA-type fructos 94.7 0.66 1.4E-05 42.0 11.9 115 63-183 77-254 (265)
269 PRK08227 autoinducer 2 aldolas 94.6 0.23 4.9E-06 45.2 9.0 147 9-169 29-232 (264)
270 PLN02411 12-oxophytodienoate r 94.5 0.058 1.3E-06 51.9 5.3 46 122-171 304-350 (391)
271 cd04739 DHOD_like Dihydroorota 94.4 0.17 3.7E-06 47.4 8.0 109 49-166 85-198 (325)
272 PRK13803 bifunctional phosphor 94.4 1.2 2.5E-05 45.5 14.5 138 21-167 9-194 (610)
273 COG1954 GlpP Glycerol-3-phosph 94.3 0.29 6.3E-06 41.3 8.1 40 122-161 131-171 (181)
274 KOG2333 Uncharacterized conser 94.2 0.81 1.7E-05 44.7 12.0 67 100-167 409-489 (614)
275 TIGR00734 hisAF_rel hisA/hisF 93.9 0.18 3.8E-06 44.7 6.6 67 99-170 38-115 (221)
276 PRK02261 methylaspartate mutas 93.8 0.59 1.3E-05 38.2 9.1 81 83-163 27-119 (137)
277 TIGR01306 GMP_reduct_2 guanosi 93.7 0.37 8E-06 45.1 8.6 108 50-163 45-165 (321)
278 TIGR01501 MthylAspMutase methy 93.6 0.66 1.4E-05 37.8 8.9 80 84-163 26-117 (134)
279 PRK07315 fructose-bisphosphate 93.5 1.9 4.2E-05 39.8 12.9 46 120-168 190-237 (293)
280 PRK06559 nicotinate-nucleotide 93.5 0.91 2E-05 41.8 10.6 94 50-169 182-275 (290)
281 PRK08385 nicotinate-nucleotide 93.5 0.78 1.7E-05 42.1 10.1 95 50-167 168-263 (278)
282 TIGR01305 GMP_reduct_1 guanosi 93.3 0.31 6.7E-06 45.6 7.4 85 76-163 80-178 (343)
283 PLN02495 oxidoreductase, actin 93.3 0.57 1.2E-05 45.0 9.3 114 48-167 97-218 (385)
284 COG2185 Sbm Methylmalonyl-CoA 93.2 0.5 1.1E-05 38.8 7.6 83 79-162 32-121 (143)
285 TIGR01334 modD putative molybd 93.2 1.1 2.4E-05 41.0 10.7 95 49-168 173-268 (277)
286 PF00478 IMPDH: IMP dehydrogen 93.1 0.29 6.3E-06 46.3 6.9 61 100-163 110-177 (352)
287 PRK06543 nicotinate-nucleotide 93.1 1.1 2.4E-05 41.2 10.5 93 50-168 178-270 (281)
288 PRK00230 orotidine 5'-phosphat 92.9 2.4 5.2E-05 37.7 12.2 36 135-171 169-215 (230)
289 PRK05283 deoxyribose-phosphate 92.9 0.65 1.4E-05 42.0 8.5 99 47-158 113-219 (257)
290 KOG2334 tRNA-dihydrouridine sy 92.8 1.7 3.6E-05 41.9 11.4 131 21-165 89-244 (477)
291 PRK12457 2-dehydro-3-deoxyphos 92.7 6.4 0.00014 36.0 14.7 40 49-93 73-112 (281)
292 PF01729 QRPTase_C: Quinolinat 92.7 1.5 3.3E-05 37.1 10.2 94 51-169 66-161 (169)
293 PRK13397 3-deoxy-7-phosphohept 92.7 3.5 7.6E-05 37.2 12.9 43 121-166 174-222 (250)
294 COG0516 GuaB IMP dehydrogenase 92.5 0.033 7.1E-07 47.2 -0.2 41 5-48 42-82 (170)
295 cd04741 DHOD_1A_like Dihydroor 92.5 3.7 8E-05 37.8 13.4 145 8-166 7-196 (294)
296 PRK06106 nicotinate-nucleotide 92.3 1.8 3.9E-05 39.8 10.7 91 51-167 180-270 (281)
297 PRK06843 inosine 5-monophospha 92.2 0.58 1.3E-05 45.2 7.8 60 101-163 156-222 (404)
298 PRK05286 dihydroorotate dehydr 92.2 2.9 6.2E-05 39.5 12.5 148 9-167 58-249 (344)
299 COG1411 Uncharacterized protei 91.7 0.26 5.6E-06 42.7 4.3 56 108-166 151-213 (229)
300 cd02071 MM_CoA_mut_B12_BD meth 91.6 1.7 3.6E-05 34.5 8.7 69 74-162 37-108 (122)
301 cd02940 DHPD_FMN Dihydropyrimi 91.5 1.1 2.5E-05 41.3 8.8 109 54-168 89-205 (299)
302 PRK05567 inosine 5'-monophosph 91.5 0.52 1.1E-05 46.6 6.9 55 3-60 34-88 (486)
303 PRK07709 fructose-bisphosphate 91.4 9.3 0.0002 35.2 14.5 48 119-169 191-239 (285)
304 TIGR01858 tag_bisphos_ald clas 91.3 9.4 0.0002 35.1 14.3 57 119-182 188-245 (282)
305 TIGR01303 IMP_DH_rel_1 IMP deh 91.3 0.58 1.3E-05 46.2 6.9 150 8-163 41-294 (475)
306 PLN02716 nicotinate-nucleotide 91.2 1.4 3.1E-05 40.8 9.0 101 51-167 186-294 (308)
307 PLN02274 inosine-5'-monophosph 91.2 0.61 1.3E-05 46.4 7.0 67 101-170 251-326 (505)
308 COG2876 AroA 3-deoxy-D-arabino 91.1 3.6 7.7E-05 37.3 11.0 40 120-162 203-248 (286)
309 TIGR00167 cbbA ketose-bisphosp 91.1 9.5 0.0002 35.2 14.3 58 119-183 194-252 (288)
310 PRK12738 kbaY tagatose-bisphos 91.1 12 0.00027 34.4 16.8 57 119-182 190-247 (286)
311 TIGR01182 eda Entner-Doudoroff 91.1 10 0.00022 33.2 13.8 137 32-184 6-144 (204)
312 PRK12737 gatY tagatose-bisphos 91.0 11 0.00023 34.8 14.4 48 119-169 190-238 (284)
313 TIGR01036 pyrD_sub2 dihydrooro 91.0 5.2 0.00011 37.7 12.8 148 9-167 55-248 (335)
314 PLN03033 2-dehydro-3-deoxyphos 90.7 3.5 7.6E-05 37.7 10.7 40 49-93 73-112 (290)
315 PRK08185 hypothetical protein; 90.5 13 0.00029 34.1 14.6 57 119-182 186-243 (283)
316 PRK12595 bifunctional 3-deoxy- 90.5 8.4 0.00018 36.7 13.7 51 120-175 276-332 (360)
317 cd00381 IMPDH IMPDH: The catal 90.4 0.97 2.1E-05 42.4 7.3 61 100-163 96-163 (325)
318 cd00947 TBP_aldolase_IIB Tagat 90.4 13 0.00028 34.1 14.3 48 119-169 184-232 (276)
319 cd00452 KDPG_aldolase KDPG and 90.3 7.9 0.00017 33.1 12.4 109 46-162 13-123 (190)
320 cd02067 B12-binding B12 bindin 90.2 2.9 6.2E-05 32.7 8.9 73 73-162 36-108 (119)
321 PRK09195 gatY tagatose-bisphos 90.2 14 0.00029 34.1 14.3 57 119-182 190-247 (284)
322 PRK08610 fructose-bisphosphate 90.1 14 0.00029 34.1 14.3 48 119-169 191-239 (286)
323 PRK07896 nicotinate-nucleotide 90.1 4.9 0.00011 37.1 11.4 94 50-168 185-279 (289)
324 PRK08318 dihydropyrimidine deh 90.1 2.3 5E-05 41.2 9.8 106 55-166 90-203 (420)
325 KOG0538 Glycolate oxidase [Ene 90.0 12 0.00026 34.8 13.5 179 4-195 60-284 (363)
326 TIGR01361 DAHP_synth_Bsub phos 89.6 8.9 0.00019 34.7 12.7 47 120-169 183-235 (260)
327 PRK07114 keto-hydroxyglutarate 89.6 1.8 3.9E-05 38.4 7.8 65 78-161 31-96 (222)
328 PF01081 Aldolase: KDPG and KH 89.3 1.4 3.1E-05 38.3 6.9 63 77-161 23-85 (196)
329 COG0329 DapA Dihydrodipicolina 89.3 4.3 9.3E-05 37.6 10.5 124 77-216 28-155 (299)
330 PRK06015 keto-hydroxyglutarate 89.2 1.5 3.2E-05 38.3 6.9 62 78-161 20-81 (201)
331 PRK05198 2-dehydro-3-deoxyphos 89.1 7.3 0.00016 35.3 11.4 39 50-93 68-106 (264)
332 cd00956 Transaldolase_FSA Tran 89.1 8.9 0.00019 33.6 11.9 45 120-164 141-186 (211)
333 PRK05835 fructose-bisphosphate 89.1 19 0.0004 33.6 14.4 56 120-182 193-270 (307)
334 TIGR01362 KDO8P_synth 3-deoxy- 89.0 8.1 0.00018 34.9 11.6 40 50-94 60-99 (258)
335 cd02070 corrinoid_protein_B12- 88.6 3 6.4E-05 36.2 8.5 78 81-161 104-189 (201)
336 PRK06978 nicotinate-nucleotide 88.6 6.5 0.00014 36.4 11.0 91 51-168 192-282 (294)
337 PRK06096 molybdenum transport 88.3 6.3 0.00014 36.3 10.7 92 50-166 175-267 (284)
338 TIGR00674 dapA dihydrodipicoli 88.3 20 0.00043 32.7 14.2 141 26-171 23-210 (285)
339 PRK09250 fructose-bisphosphate 88.2 12 0.00026 35.3 12.6 36 134-169 281-324 (348)
340 TIGR02313 HpaI-NOT-DapA 2,4-di 88.1 4.5 9.7E-05 37.3 9.8 123 77-215 24-151 (294)
341 COG0167 PyrD Dihydroorotate de 87.7 5.9 0.00013 36.9 10.2 147 5-163 5-193 (310)
342 PLN02826 dihydroorotate dehydr 87.6 8.7 0.00019 37.2 11.7 96 65-168 188-301 (409)
343 PRK09016 quinolinate phosphori 87.6 7.2 0.00016 36.1 10.6 89 51-167 195-284 (296)
344 PRK05096 guanosine 5'-monophos 87.5 3.1 6.6E-05 39.2 8.2 86 75-163 80-179 (346)
345 cd02922 FCB2_FMN Flavocytochro 87.1 6.3 0.00014 37.3 10.2 38 123-164 205-242 (344)
346 PRK08673 3-deoxy-7-phosphohept 87.0 13 0.00029 35.0 12.3 45 120-167 251-301 (335)
347 KOG4201 Anthranilate synthase 86.9 2.4 5.2E-05 37.3 6.6 36 134-169 237-272 (289)
348 PF09370 TIM-br_sig_trns: TIM- 86.7 6.9 0.00015 35.5 9.7 158 5-167 9-250 (268)
349 cd00408 DHDPS-like Dihydrodipi 86.2 9.9 0.00021 34.4 10.9 125 77-217 21-149 (281)
350 cd00377 ICL_PEPM Members of th 86.0 25 0.00054 31.4 13.2 170 3-187 1-196 (243)
351 PRK13398 3-deoxy-7-phosphohept 85.8 27 0.00059 31.7 16.1 44 121-167 186-235 (266)
352 PRK12857 fructose-1,6-bisphosp 85.7 29 0.00063 31.9 14.5 57 119-182 190-247 (284)
353 cd04738 DHOD_2_like Dihydrooro 85.5 7.6 0.00016 36.3 9.9 106 53-166 116-239 (327)
354 PRK13396 3-deoxy-7-phosphohept 85.1 26 0.00055 33.3 13.2 44 120-166 260-309 (352)
355 PTZ00314 inosine-5'-monophosph 84.8 1.6 3.5E-05 43.4 5.3 60 101-163 244-310 (495)
356 PRK06552 keto-hydroxyglutarate 84.6 27 0.00059 30.6 15.1 141 27-184 6-151 (213)
357 cd06557 KPHMT-like Ketopantoat 84.5 29 0.00064 31.4 12.8 109 2-114 3-131 (254)
358 COG0800 Eda 2-keto-3-deoxy-6-p 83.8 6.5 0.00014 34.5 7.9 63 77-161 28-90 (211)
359 PRK05458 guanosine 5'-monophos 83.8 5.2 0.00011 37.5 7.9 108 50-163 48-168 (326)
360 PRK04147 N-acetylneuraminate l 83.5 13 0.00027 34.2 10.3 125 77-217 27-156 (293)
361 COG0157 NadC Nicotinate-nucleo 83.4 14 0.0003 33.8 10.2 93 50-166 173-265 (280)
362 PRK02506 dihydroorotate dehydr 83.4 15 0.00033 34.1 10.9 139 8-159 10-184 (310)
363 PRK09140 2-dehydro-3-deoxy-6-p 83.4 30 0.00065 30.2 14.1 122 30-162 6-130 (206)
364 TIGR01302 IMP_dehydrog inosine 83.3 1.9 4.1E-05 42.3 5.0 55 3-60 27-81 (450)
365 PF00701 DHDPS: Dihydrodipicol 83.2 36 0.00078 31.0 15.4 142 25-171 25-213 (289)
366 cd02069 methionine_synthase_B1 82.9 5.1 0.00011 35.2 7.1 79 82-160 111-198 (213)
367 cd00408 DHDPS-like Dihydrodipi 82.4 38 0.00081 30.6 14.7 141 26-171 22-209 (281)
368 TIGR01417 PTS_I_fam phosphoeno 82.2 27 0.00059 35.4 12.8 139 32-184 380-538 (565)
369 KOG4202 Phosphoribosylanthrani 82.1 11 0.00024 32.3 8.3 100 63-164 91-217 (227)
370 PRK00042 tpiA triosephosphate 82.0 22 0.00049 32.0 11.0 34 134-167 203-236 (250)
371 PF00218 IGPS: Indole-3-glycer 81.9 4.6 0.0001 36.5 6.6 69 99-170 70-145 (254)
372 PRK00278 trpC indole-3-glycero 81.7 6.5 0.00014 35.6 7.6 65 100-167 73-144 (260)
373 PF02310 B12-binding: B12 bind 81.6 10 0.00022 29.3 7.8 30 134-164 81-112 (121)
374 PF02548 Pantoate_transf: Keto 81.5 27 0.00058 31.7 11.3 93 22-115 23-136 (261)
375 PF13941 MutL: MutL protein 81.4 29 0.00062 34.2 12.3 116 27-163 67-185 (457)
376 cd00951 KDGDH 5-dehydro-4-deox 81.2 18 0.00039 33.1 10.4 119 77-216 24-147 (289)
377 cd00952 CHBPH_aldolase Trans-o 81.0 18 0.00039 33.6 10.4 123 77-216 32-160 (309)
378 PRK06806 fructose-bisphosphate 80.7 46 0.001 30.5 14.9 161 21-185 3-198 (281)
379 TIGR02370 pyl_corrinoid methyl 80.5 9.5 0.00021 32.9 7.9 78 81-161 106-191 (197)
380 PLN02417 dihydrodipicolinate s 80.5 19 0.00041 32.9 10.3 121 77-216 25-150 (280)
381 PLN02623 pyruvate kinase 80.3 16 0.00034 37.0 10.3 86 77-163 281-417 (581)
382 TIGR00683 nanA N-acetylneurami 80.3 21 0.00046 32.7 10.6 123 77-216 24-153 (290)
383 PF01116 F_bP_aldolase: Fructo 79.9 50 0.0011 30.4 13.4 48 120-169 193-241 (287)
384 PRK01362 putative translaldola 79.1 44 0.00096 29.4 12.7 45 119-163 140-185 (214)
385 PF00682 HMGL-like: HMGL-like 78.8 28 0.0006 30.6 10.5 85 26-110 141-237 (237)
386 cd00950 DHDPS Dihydrodipicolin 78.5 52 0.0011 29.8 14.1 141 26-171 25-212 (284)
387 cd02808 GltS_FMN Glutamate syn 78.4 6.7 0.00015 37.8 6.9 51 45-95 195-246 (392)
388 PF03102 NeuB: NeuB family; I 78.2 32 0.00069 30.9 10.7 81 76-159 102-197 (241)
389 PRK05718 keto-hydroxyglutarate 78.0 47 0.001 29.1 16.4 144 26-185 7-152 (212)
390 cd00954 NAL N-Acetylneuraminic 77.8 30 0.00065 31.6 10.7 124 77-217 24-154 (288)
391 PRK03170 dihydrodipicolinate s 77.7 31 0.00066 31.5 10.8 123 77-216 25-152 (292)
392 PRK04147 N-acetylneuraminate l 77.6 57 0.0012 29.8 14.4 87 6-93 4-105 (293)
393 PRK09426 methylmalonyl-CoA mut 77.6 33 0.00071 35.8 11.9 79 82-161 605-690 (714)
394 COG0329 DapA Dihydrodipicolina 77.0 62 0.0013 29.9 14.1 142 26-171 29-217 (299)
395 PRK03620 5-dehydro-4-deoxygluc 76.2 15 0.00033 33.9 8.4 80 77-169 31-114 (303)
396 cd03315 MLE_like Muconate lact 75.9 59 0.0013 29.1 12.3 118 46-168 84-215 (265)
397 PLN02424 ketopantoate hydroxym 75.9 71 0.0015 30.1 12.6 93 21-114 41-155 (332)
398 cd02911 arch_FMN Archeal FMN-b 75.8 22 0.00048 31.6 9.0 82 46-130 123-210 (233)
399 cd00950 DHDPS Dihydrodipicolin 75.4 32 0.00069 31.2 10.2 123 77-216 24-151 (284)
400 COG0134 TrpC Indole-3-glycerol 75.1 5.7 0.00012 35.9 5.0 66 99-167 68-140 (254)
401 PRK06256 biotin synthase; Vali 74.8 72 0.0016 29.6 15.0 71 22-94 91-169 (336)
402 TIGR03849 arch_ComA phosphosul 74.8 47 0.001 29.8 10.6 103 46-165 38-156 (237)
403 TIGR03569 NeuB_NnaB N-acetylne 74.6 70 0.0015 30.1 12.3 103 77-185 123-251 (329)
404 smart00052 EAL Putative diguan 74.1 30 0.00065 29.8 9.4 39 122-161 191-229 (241)
405 PRK13111 trpA tryptophan synth 74.1 33 0.00071 31.1 9.7 93 66-163 14-124 (258)
406 TIGR00674 dapA dihydrodipicoli 74.0 36 0.00077 31.0 10.2 123 77-216 22-149 (285)
407 cd07943 DRE_TIM_HOA 4-hydroxy- 73.8 56 0.0012 29.4 11.3 87 26-112 145-243 (263)
408 TIGR03326 rubisco_III ribulose 73.5 49 0.0011 32.2 11.3 92 3-95 135-245 (412)
409 cd02809 alpha_hydroxyacid_oxid 73.4 14 0.00031 34.0 7.4 60 101-164 133-201 (299)
410 PLN02460 indole-3-glycerol-pho 73.3 7 0.00015 36.8 5.3 67 99-168 141-215 (338)
411 PF00224 PK: Pyruvate kinase, 73.3 17 0.00036 34.4 8.0 86 77-163 179-315 (348)
412 PF03932 CutC: CutC family; I 73.2 25 0.00053 30.7 8.4 111 50-162 73-198 (201)
413 COG0159 TrpA Tryptophan syntha 73.1 46 0.00099 30.3 10.3 94 5-109 144-243 (265)
414 PRK12656 fructose-6-phosphate 73.0 67 0.0015 28.4 12.5 44 120-163 145-189 (222)
415 TIGR00875 fsa_talC_mipB fructo 72.5 67 0.0015 28.2 12.6 44 119-163 140-185 (213)
416 PRK12653 fructose-6-phosphate 72.2 70 0.0015 28.3 12.3 114 47-163 64-187 (220)
417 PRK15452 putative protease; Pr 71.9 40 0.00087 33.1 10.4 30 134-163 110-141 (443)
418 PRK14565 triosephosphate isome 71.8 59 0.0013 29.1 10.6 32 134-167 189-222 (237)
419 TIGR02320 PEP_mutase phosphoen 71.6 83 0.0018 28.9 14.9 36 134-169 211-246 (285)
420 PRK13305 sgbH 3-keto-L-gulonat 71.5 60 0.0013 28.6 10.6 114 54-170 46-198 (218)
421 TIGR00640 acid_CoA_mut_C methy 71.2 41 0.00089 27.1 8.8 90 24-116 18-111 (132)
422 cd03316 MR_like Mandelate race 71.1 41 0.00089 31.5 10.2 62 104-168 210-275 (357)
423 cd08209 RLP_DK-MTP-1-P-enolase 70.8 34 0.00074 33.0 9.5 91 4-95 116-225 (391)
424 TIGR00262 trpA tryptophan synt 70.8 31 0.00067 31.2 8.8 80 77-162 27-121 (256)
425 PRK01130 N-acetylmannosamine-6 70.7 36 0.00079 29.6 9.1 63 100-168 26-100 (221)
426 TIGR01740 pyrF orotidine 5'-ph 70.5 72 0.0016 27.7 11.7 33 136-168 159-201 (213)
427 cd08213 RuBisCO_large_III Ribu 70.2 41 0.00089 32.7 9.9 91 4-95 123-232 (412)
428 cd00564 TMP_TenI Thiamine mono 70.0 63 0.0014 26.8 10.3 64 103-169 65-128 (196)
429 PRK10415 tRNA-dihydrouridine s 70.0 81 0.0018 29.4 11.7 84 46-130 116-213 (321)
430 TIGR02313 HpaI-NOT-DapA 2,4-di 69.9 90 0.002 28.6 14.2 156 11-171 5-214 (294)
431 cd00954 NAL N-Acetylneuraminic 69.9 88 0.0019 28.5 14.7 69 25-93 24-102 (288)
432 PRK03170 dihydrodipicolinate s 69.9 88 0.0019 28.5 14.4 69 25-93 25-102 (292)
433 cd08207 RLP_NonPhot Ribulose b 69.6 63 0.0014 31.3 11.1 90 4-95 135-244 (406)
434 TIGR01319 glmL_fam conserved h 69.6 32 0.0007 33.8 9.1 113 26-160 62-176 (463)
435 PRK14040 oxaloacetate decarbox 69.3 65 0.0014 32.9 11.6 108 52-162 64-229 (593)
436 TIGR01037 pyrD_sub1_fam dihydr 69.3 13 0.00027 34.2 6.1 49 46-94 140-189 (300)
437 TIGR00736 nifR3_rel_arch TIM-b 69.2 45 0.00097 29.7 9.3 83 46-130 118-210 (231)
438 PRK02615 thiamine-phosphate py 69.1 59 0.0013 30.9 10.6 90 77-169 160-273 (347)
439 cd00951 KDGDH 5-dehydro-4-deox 68.6 95 0.0021 28.3 15.1 143 25-171 24-212 (289)
440 cd01571 NAPRTase_B Nicotinate 68.5 8.9 0.00019 35.6 4.9 46 122-168 230-278 (302)
441 PRK12331 oxaloacetate decarbox 68.4 67 0.0014 31.6 11.1 88 26-113 158-256 (448)
442 cd02810 DHOD_DHPD_FMN Dihydroo 68.3 16 0.00034 33.3 6.5 83 10-94 98-196 (289)
443 PRK08508 biotin synthase; Prov 68.2 95 0.0021 28.2 13.6 92 22-114 40-154 (279)
444 TIGR00222 panB 3-methyl-2-oxob 68.2 96 0.0021 28.2 11.5 93 21-114 21-133 (263)
445 TIGR00683 nanA N-acetylneurami 68.1 98 0.0021 28.3 14.8 68 26-93 25-102 (290)
446 PRK05437 isopentenyl pyrophosp 67.7 19 0.00042 34.1 7.1 49 47-95 170-218 (352)
447 PLN02591 tryptophan synthase 67.6 55 0.0012 29.5 9.7 70 23-94 143-218 (250)
448 COG1304 idi Isopentenyl diphos 67.6 23 0.0005 33.8 7.5 59 134-195 218-279 (360)
449 PRK10481 hypothetical protein; 67.6 78 0.0017 28.1 10.4 91 16-114 114-210 (224)
450 cd00953 KDG_aldolase KDG (2-ke 67.1 1E+02 0.0022 28.1 14.3 27 146-172 182-208 (279)
451 COG0502 BioB Biotin synthase a 67.1 1.2E+02 0.0025 28.8 13.3 144 26-171 91-302 (335)
452 PF04131 NanE: Putative N-acet 66.8 80 0.0017 27.3 9.9 121 25-153 54-186 (192)
453 TIGR02151 IPP_isom_2 isopenten 66.2 22 0.00049 33.3 7.2 49 47-95 163-211 (333)
454 PRK07107 inosine 5-monophospha 66.2 11 0.00023 37.6 5.2 53 6-61 47-99 (502)
455 COG0352 ThiE Thiamine monophos 66.0 51 0.0011 28.9 8.9 44 123-169 94-137 (211)
456 cd04740 DHOD_1B_like Dihydroor 66.0 18 0.00039 33.0 6.4 48 46-93 137-185 (296)
457 PRK04208 rbcL ribulose bisopho 65.7 59 0.0013 32.2 10.1 91 4-95 152-262 (468)
458 PRK07807 inosine 5-monophospha 65.7 11 0.00023 37.5 5.0 156 6-169 40-304 (479)
459 PRK13802 bifunctional indole-3 65.5 19 0.00042 37.3 7.0 67 99-168 72-145 (695)
460 PRK12581 oxaloacetate decarbox 65.4 71 0.0015 31.6 10.6 107 53-162 73-237 (468)
461 TIGR01064 pyruv_kin pyruvate k 65.4 67 0.0014 31.8 10.6 86 77-163 174-311 (473)
462 cd03319 L-Ala-DL-Glu_epimerase 65.1 1.1E+02 0.0025 28.0 13.4 118 46-169 133-264 (316)
463 PRK12331 oxaloacetate decarbox 65.0 81 0.0017 31.0 11.0 108 52-162 63-228 (448)
464 TIGR03569 NeuB_NnaB N-acetylne 65.0 47 0.001 31.2 9.0 75 77-158 79-161 (329)
465 cd07937 DRE_TIM_PC_TC_5S Pyruv 65.0 92 0.002 28.3 10.8 88 26-113 153-251 (275)
466 PF01207 Dus: Dihydrouridine s 64.9 23 0.0005 32.9 6.9 98 45-148 104-215 (309)
467 PRK10558 alpha-dehydro-beta-de 64.8 63 0.0014 29.2 9.5 25 71-95 24-48 (256)
468 PF00072 Response_reg: Respons 64.8 54 0.0012 24.2 8.0 69 75-162 31-99 (112)
469 COG5016 Pyruvate/oxaloacetate 64.5 71 0.0015 31.0 9.9 107 53-162 66-230 (472)
470 PLN02429 triosephosphate isome 64.4 58 0.0013 30.5 9.3 34 134-167 263-296 (315)
471 PF03102 NeuB: NeuB family; I 64.4 20 0.00044 32.1 6.2 71 77-154 59-133 (241)
472 cd07939 DRE_TIM_NifV Streptomy 64.2 1.1E+02 0.0023 27.4 11.0 99 13-112 127-241 (259)
473 TIGR00693 thiE thiamine-phosph 63.5 91 0.002 26.3 10.0 34 137-170 97-130 (196)
474 COG2197 CitB Response regulato 63.2 48 0.001 28.8 8.3 68 77-163 36-103 (211)
475 COG0821 gcpE 1-hydroxy-2-methy 63.2 98 0.0021 29.2 10.4 99 63-189 19-123 (361)
476 PRK14041 oxaloacetate decarbox 63.0 93 0.002 30.8 11.0 87 26-112 157-254 (467)
477 TIGR03586 PseI pseudaminic aci 62.9 1.4E+02 0.003 28.1 12.7 107 46-160 74-219 (327)
478 cd00945 Aldolase_Class_I Class 62.8 37 0.00081 28.3 7.4 49 121-169 35-91 (201)
479 KOG2335 tRNA-dihydrouridine sy 62.7 20 0.00042 34.0 5.9 144 8-162 17-174 (358)
480 PLN02389 biotin synthase 62.7 1.5E+02 0.0032 28.5 16.0 47 138-185 303-350 (379)
481 PF02581 TMP-TENI: Thiamine mo 62.5 73 0.0016 26.8 9.1 81 80-170 49-129 (180)
482 TIGR01859 fruc_bis_ald_ fructo 62.4 1.3E+02 0.0028 27.6 16.2 160 24-187 4-200 (282)
483 PF04476 DUF556: Protein of un 62.3 98 0.0021 27.7 9.9 45 121-165 99-153 (235)
484 PF00290 Trp_syntA: Tryptophan 62.2 58 0.0013 29.6 8.7 92 6-108 138-235 (259)
485 COG1856 Uncharacterized homolo 62.0 1E+02 0.0022 27.6 9.8 86 17-106 35-128 (275)
486 PRK14042 pyruvate carboxylase 61.9 90 0.0019 31.9 10.9 123 35-160 47-226 (596)
487 PRK15108 biotin synthase; Prov 61.9 1.4E+02 0.0031 28.1 14.8 48 138-186 261-309 (345)
488 PRK14040 oxaloacetate decarbox 61.6 93 0.002 31.8 11.0 87 26-112 159-256 (593)
489 cd00288 Pyruvate_Kinase Pyruva 61.5 75 0.0016 31.6 10.1 85 77-162 177-312 (480)
490 PRK12581 oxaloacetate decarbox 61.5 1.1E+02 0.0023 30.4 11.0 88 26-113 167-265 (468)
491 TIGR00696 wecB_tagA_cpsF bacte 61.3 1E+02 0.0022 26.2 10.1 81 21-105 30-119 (177)
492 COG1908 FrhD Coenzyme F420-red 61.2 10 0.00022 30.2 3.2 29 135-164 33-61 (132)
493 CHL00200 trpA tryptophan synth 61.1 89 0.0019 28.3 9.8 85 5-94 141-231 (263)
494 PRK11858 aksA trans-homoaconit 60.9 1.3E+02 0.0029 28.7 11.5 93 21-113 140-248 (378)
495 PLN02417 dihydrodipicolinate s 60.9 1.3E+02 0.0028 27.3 14.0 69 25-93 25-102 (280)
496 PF13714 PEP_mutase: Phosphoen 60.8 22 0.00047 31.9 5.7 79 70-162 12-104 (238)
497 PRK12655 fructose-6-phosphate 60.8 1.2E+02 0.0026 26.8 12.1 44 120-163 143-187 (220)
498 PRK07188 nicotinate phosphorib 60.6 16 0.00035 34.7 5.1 51 119-170 262-317 (352)
499 cd00311 TIM Triosephosphate is 60.5 8.8 0.00019 34.5 3.1 34 134-168 199-233 (242)
500 PF02679 ComA: (2R)-phospho-3- 60.4 1E+02 0.0022 27.7 9.9 123 46-185 51-194 (244)
No 1
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=100.00 E-value=5.1e-57 Score=421.35 Aligned_cols=266 Identities=44% Similarity=0.741 Sum_probs=193.7
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHH---
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNE--- 78 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~--- 78 (300)
.|+++|||+|||||+||+ ++|+++||+|||||||+|+|+++ +.++++++++|+++|++|++||+||++.+.+...
T Consensus 3 ~~t~~lgi~~PIiqapM~-~is~~~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~ 80 (330)
T PF03060_consen 3 RLTELLGIKYPIIQAPMG-GISTPELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEE 80 (330)
T ss_dssp HHHHHHT-SSSEEE---T-TTSSHHHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-
T ss_pred hHHHHhCCCcCEEcCCCC-CCChHHHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCcccchhh
Confidence 378999999999999998 79999999999999999999975 7899999999999999999999999998765311
Q ss_pred ----------HHHHHHH--------------cCCcEEEEcCCCCcHHHHHHHHHCCCeEeec------------------
Q 022271 79 ----------NIKAILS--------------EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ------------------ 116 (300)
Q Consensus 79 ----------~~~~~~e--------------~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~------------------ 116 (300)
..+.+++ +++++|++++|.|++++++++|++|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~i 160 (330)
T PF03060_consen 81 DAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAI 160 (330)
T ss_dssp HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEE
T ss_pred hhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEE
Confidence 1334444 4555999999998899999999999999876
Q ss_pred --------------c-ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHH
Q 022271 117 --------------D-GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 181 (300)
Q Consensus 117 --------------~-~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~ 181 (300)
. +++.|+|++++.+ ++|||+||||.|+++++++|++|||||||||||++|+||++|+.||++
T Consensus 161 v~qG~eAGGH~g~~~~~~~~L~~~v~~~~---~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~~ 237 (330)
T PF03060_consen 161 VAQGPEAGGHRGFEVGSTFSLLPQVRDAV---DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASDAYKQA 237 (330)
T ss_dssp EEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHHH
T ss_pred EEeccccCCCCCccccceeeHHHHHhhhc---CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccccChHHHHHH
Confidence 1 3789999999998 799999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcceEEEecccCCCCCCCceecChhhHhhhcCCCCcccCCCcccccccccchHHH--HHHhhcccccccccCCcc
Q 022271 182 LVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKK--IHRLAGTVPNVTTTGDID 259 (300)
Q Consensus 182 i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~gd~~ 259 (300)
|++++++++. ... .+.|+|+|+|+|+|+++|... ......+| .++..... +++. +...||.|
T Consensus 238 l~~a~~~dtv-~t~--~~~G~~~R~l~n~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~------~~~~g~~~ 301 (330)
T PF03060_consen 238 LVDATEEDTV-LTR--SFSGRPARVLRNPFTEEWEER--SPAPLPYP-----EQHYLTKDFCLRKA------AKEGGDVE 301 (330)
T ss_dssp HHHGGTT-EE-EES--TTTTS-EEEE-SHHHHHHHHH--HHHHCCCH-----HHHHHHTHHHHHHH------HCCHT-TT
T ss_pred HHhCCCCCEE-EEe--ecccchhhhhCcHHHHHHHhc--ccccccch-----hHHHHhhhhHHHHH------HHhcCCcc
Confidence 9998766632 222 235999999999999998751 11111222 11111222 3221 22337999
Q ss_pred cceeeccccccccCCCCCHHHHHHHHHHH
Q 022271 260 SMVMFAGEGVGLIREILPAGEVVKQLVEG 288 (300)
Q Consensus 260 ~~~~~aGq~~~~i~~i~~a~eiv~~l~~e 288 (300)
++.+|+||++++|+++.|++|||++|++|
T Consensus 302 ~~~~~aGq~~g~i~~i~~a~eiv~~L~~e 330 (330)
T PF03060_consen 302 RGLLWAGQGVGLIKEIRPAAEIVEELVEE 330 (330)
T ss_dssp TS--B--GGGGGG-S-B-HHHHHHHHHHH
T ss_pred ceeEecChhhhhhcCCCcHHHHHHHHHhC
Confidence 99999999999999999999999999987
No 2
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=100.00 E-value=4.2e-55 Score=403.90 Aligned_cols=270 Identities=34% Similarity=0.586 Sum_probs=229.8
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHH
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENI 80 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~ 80 (300)
.|+++||++||||||||+ ++|+++|++||||+||+|+|+++ +.++++++++|+++|+++++|||||++...+. .+.+
T Consensus 3 ~l~~~lgi~~Pii~apM~-~~s~~~la~avs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~ 80 (307)
T TIGR03151 3 RLCDLLGIEYPIFQGGMA-WVATGSLAAAVSNAGGLGIIGAG-NAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELV 80 (307)
T ss_pred hhhHHhCCCCCEEcCCCC-CCCCHHHHHHHHhCCCcceeccc-cCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHH
Confidence 478999999999999998 79999999999999999999985 67999999999999999999999999987665 5678
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-------------------------------cChhchHHHHHHh
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-------------------------------DGLISLLPMVVDL 129 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-------------------------------~~~~~ll~~v~~~ 129 (300)
+.++++++++|++++|.| .++++++|+.|++++++ .+++.++|++++.
T Consensus 81 ~~~~~~~v~~v~~~~g~p-~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~ 159 (307)
T TIGR03151 81 DLVIEEKVPVVTTGAGNP-GKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDA 159 (307)
T ss_pred HHHHhCCCCEEEEcCCCc-HHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHH
Confidence 999999999999999875 56999999999998875 1368899999998
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcc--eEEEecccCCCCCCCcee
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE--YTDVFGRARWPGAPHRVL 207 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~--~t~~~~~~~~~g~~~R~l 207 (300)
+ ++|||++|||.|+++++++|.+|||||++||+|++|.||.+|+.||++|++++.++ +|..+ +|+|+|+|
T Consensus 160 ~---~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~Es~~~~~~k~~l~~~~~~dt~~t~~~-----~G~~~R~l 231 (307)
T TIGR03151 160 V---SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKECNVHPNYKEKVLKAKDRDTVVTGAS-----TGHPVRVL 231 (307)
T ss_pred h---CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccccCCCHHHHHHHHhCCCCCEEEEecC-----CCCceeee
Confidence 8 79999999999999999999999999999999999999999999999999976655 33332 48999999
Q ss_pred cChhhHhhhcCCCCcccCCCcccccccccchHHHHHHhhcccccccccCCcccceeeccccccccCCCCCHHHHHHHHHH
Q 022271 208 QTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVE 287 (300)
Q Consensus 208 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gd~~~~~~~aGq~~~~i~~i~~a~eiv~~l~~ 287 (300)
+|+|+++|.+.+.... ...+ ..+.....++ .+..+||.|++.+|+||++++|+++.|++|||++|++
T Consensus 232 ~n~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~-------~~~~~g~~~~~~~~aGq~~~~i~~i~~~~eiv~~l~~ 298 (307)
T TIGR03151 232 KNKLTRKYQELEKEGA-SPEE-----FEKLGAGALR-------RAVVEGDVENGSVMAGQIAGLIKEIKPAKEIIEDIMS 298 (307)
T ss_pred cCHHHHHHHhhcccCC-CHHH-----HHHHHHHHHH-------HHHHcCCccceeEeccchhhhcCCCCcHHHHHHHHHH
Confidence 9999999975432110 0011 1111112222 2446899999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 022271 288 GAQLLVHT 295 (300)
Q Consensus 288 e~~~~l~~ 295 (300)
|+.+++++
T Consensus 299 e~~~~~~~ 306 (307)
T TIGR03151 299 EAKEVIKR 306 (307)
T ss_pred HHHHHHhc
Confidence 99988754
No 3
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=100.00 E-value=3.9e-51 Score=380.33 Aligned_cols=276 Identities=37% Similarity=0.593 Sum_probs=228.6
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcE-----E-----ee--
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPF-----G-----VG-- 69 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~-----g-----vn-- 69 (300)
.++..++++|||||+||+ ++|+++||.||||+|++|+++.. +.+.+.++++|+++|+++++|+ + +|
T Consensus 6 ~~~~~~~i~~PIiq~gM~-~vs~~~LA~Avs~aGglG~ia~~-~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~ 83 (336)
T COG2070 6 RFILLLGIKYPIIQGGMA-GVSTPELAAAVSNAGGLGIIASG-GLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVN 83 (336)
T ss_pred hhhcccCccCCeecCCcc-ccCcHHHHHHHhccCCccccccc-cCCHHHHHHHHHHHHHhcCCcchhcccccccccchhh
Confidence 467789999999999999 69999999999999999999874 6888999999999999999993 3 33
Q ss_pred eecC--CCcHHHHHHHHHc-CCcEEEEcCCCCcHHHHHHHHHCCCeEeec------------------------------
Q 022271 70 VVLA--FPHNENIKAILSE-KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ------------------------------ 116 (300)
Q Consensus 70 l~~~--~~~~~~~~~~~e~-g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~------------------------------ 116 (300)
++.. ....+.++.+++. +++++++++|.||.++++.+|..|+++++.
T Consensus 84 ~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g 163 (336)
T COG2070 84 ILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQGAEAGGHRG 163 (336)
T ss_pred eecccccchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcCCCcCC
Confidence 3332 2346788888887 999999999977899999999999998875
Q ss_pred -----cChhchHHHHHHhhCCCC-CcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcce
Q 022271 117 -----DGLISLLPMVVDLIGDRD-IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEY 190 (300)
Q Consensus 117 -----~~~~~ll~~v~~~~~~~~-iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~ 190 (300)
.+++.|+|+|++++ + ||||+||||+|++++++||++||+||||||||++|+||++|+.||++|++++++|+
T Consensus 164 ~~~~~~~t~~Lv~ev~~~~---~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~~~~K~~l~~a~~~Dt 240 (336)
T COG2070 164 GVDLEVSTFALVPEVVDAV---DGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYKQALLQATEDDT 240 (336)
T ss_pred CCCCCccHHHHHHHHHHHh---cCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCCCHHHHHHHhcccccCe
Confidence 23689999999998 6 99999999999999999999999999999999999999999999999999987664
Q ss_pred EEEecccCCCCCCCceecChhhHhhhcCCCCc-ccCCCcccccccccchHHHHHHhhcccccccccCCcccceeeccccc
Q 022271 191 TDVFGRARWPGAPHRVLQTPFFSNWKNIPAHE-NEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGV 269 (300)
Q Consensus 191 t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gd~~~~~~~aGq~~ 269 (300)
....+ ..|+|+|+++|+|++++...+... ....+|. +......++ .+...+|.+.+.+|+||..
T Consensus 241 v~~~~---~~G~paR~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------~a~~~~~~~~~~~~aGq~~ 305 (336)
T COG2070 241 VLTKS---FTGKPARVLRNPLTEEYEDPERAPKAPLLYPE-----EGKKVGQLR-------KAVALGDADKGNVWAGQGF 305 (336)
T ss_pred EEEcc---cCCCcchhhCcHHHHhhhcccccccCCCccch-----hhhcchHHH-------HHHhhcchhhcchhcchhh
Confidence 43332 249999999999999987543210 1112221 111122222 2456889999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHhhh
Q 022271 270 GLIREILPAGEVVKQLVEGAQLLVHTKF 297 (300)
Q Consensus 270 ~~i~~i~~a~eiv~~l~~e~~~~l~~~~ 297 (300)
++++++.|++++++++.+++.+.++...
T Consensus 306 ~~~~~~~~~~~~i~~~~e~~~~~~~~~~ 333 (336)
T COG2070 306 GLINDIPTAADVIRSLVEEAKELTAGLA 333 (336)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999886643
No 4
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=100.00 E-value=6.9e-47 Score=346.79 Aligned_cols=202 Identities=23% Similarity=0.416 Sum_probs=179.4
Q ss_pred CccceecCCCCCCCCc-HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-cCCcEEeeeecCCC---cHHHHHHH
Q 022271 9 FEYGIVQAPLGPDISG-PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFP---HNENIKAI 83 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~-~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~---~~~~~~~~ 83 (300)
++|||||+||+ |+|+ ++||+||||+||||+|+++ ++++++++++|+++|++ |++|||||++.+.+ ..++++.+
T Consensus 1 ~~yPIiqgpM~-~vs~~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi 78 (320)
T cd04743 1 TRYPIVQGPMT-RVSDVAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVV 78 (320)
T ss_pred CCCCEECCCcC-CCCCcHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHH
Confidence 48999999998 7998 9999999999999999985 78999999999999996 89999999976532 46899999
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-------------------------------cChhchHHHHHHhhCC
Q 022271 84 LSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-------------------------------DGLISLLPMVVDLIGD 132 (300)
Q Consensus 84 ~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-------------------------------~~~~~ll~~v~~~~~~ 132 (300)
++++|++|++++|.| .. ++++|++|+++++. .+++.|+|++++.+..
T Consensus 79 ~e~~v~~V~~~~G~P-~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~ 156 (320)
T cd04743 79 RAIKPTFALIAGGRP-DQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLA 156 (320)
T ss_pred HhcCCcEEEEcCCCh-HH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHH
Confidence 999999999999875 44 79999999999875 3488899999987721
Q ss_pred -------CCCcEEEccCCCChHHHHHHHHCCC--------cEEEeccccccCcccC----CCHHHHHHHHcCCCcceEEE
Q 022271 133 -------RDIPIIAAGGIVDARGYVAALSLGA--------QGICLGTRFVASEESY----AHPEYKRKLVEMDKTEYTDV 193 (300)
Q Consensus 133 -------~~iPViaaGGI~~g~~v~aal~lGA--------dgV~~GT~fl~t~Es~----~~~~~k~~i~~a~~t~~t~~ 193 (300)
.++|||+||||+|++++++++++|| +||||||+|++|+||. +|+.||++++++++|+++..
T Consensus 157 ~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~~~~~~~~~~k~~~l~a~~td~~~t 236 (320)
T cd04743 157 ANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAVSAGAILPTFQDQAIAATRTALLET 236 (320)
T ss_pred hhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhhcCcccccHHHHHHHHhCCCceEEEe
Confidence 2699999999999999999999999 8999999999999998 89999999999999886655
Q ss_pred ecccCCCCCCCceecChhhHhhhcCC
Q 022271 194 FGRARWPGAPHRVLQTPFFSNWKNIP 219 (300)
Q Consensus 194 ~~~~~~~g~~~R~l~n~~~~~~~~~~ 219 (300)
+ +|+|.|+|+|+|+++|.+.+
T Consensus 237 ~-----~G~~~R~l~n~~~~~~~~~~ 257 (320)
T cd04743 237 G-----PGHATRCVVSPFVDEFRATR 257 (320)
T ss_pred c-----CCCceeecCCHHHHHHHHhh
Confidence 4 48999999999999987643
No 5
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=100.00 E-value=1.4e-40 Score=314.70 Aligned_cols=212 Identities=24% Similarity=0.310 Sum_probs=167.6
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-c-CCcEEeeeecCCC----
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-T-ERPFGVGVVLAFP---- 75 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-~-~~P~gvnl~~~~~---- 75 (300)
+|+++||++||||||||+.|+|+++|++||||||+||+|+++ +.++++++++|+++|+. + ++||||||+.+..
T Consensus 5 ~f~~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag-~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~ 83 (418)
T cd04742 5 SFKEDYGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAG-GLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPEL 83 (418)
T ss_pred HHHHHhCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCC-CCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchh
Confidence 589999999999999998679999999999999999999986 57999999999999994 7 8999999997532
Q ss_pred cHHHHHHHHHcCCcEEEEc--------------------------------------------CCCCcHHHHHHHHHCC-
Q 022271 76 HNENIKAILSEKVAVLQVS--------------------------------------------WGEYSEELVLEAHSAG- 110 (300)
Q Consensus 76 ~~~~~~~~~e~g~~~i~~~--------------------------------------------~G~~~~~~v~~~~~~G- 110 (300)
..+.++.+++++|++|..+ +|.||+++++++++.|
T Consensus 84 e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~ 163 (418)
T cd04742 84 EEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK 163 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC
Confidence 2456888888888766544 2333455556666655
Q ss_pred --------------CeEeec----------cChhchHHHHHHhhCC--------CCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 111 --------------VKVVPQ----------DGLISLLPMVVDLIGD--------RDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 111 --------------~~v~~~----------~~~~~ll~~v~~~~~~--------~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
...+.. .+++.|+|.|.+..+. .++|||+||||+|+++++++|+||||
T Consensus 164 it~~eA~~A~~~g~aD~Ivvq~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd 243 (418)
T cd04742 164 ITEEQAELARRVPVADDITVEADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGAD 243 (418)
T ss_pred CCHHHHHHHHhCCCCCEEEEcccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCCc
Confidence 222221 2367788877764311 15999999999999999999999999
Q ss_pred EEEeccccccCcccCCCHHHHHHHHcCCCcc--eEEEecccCCCCCCCceecChh-----hHhh
Q 022271 159 GICLGTRFVASEESYAHPEYKRKLVEMDKTE--YTDVFGRARWPGAPHRVLQTPF-----FSNW 215 (300)
Q Consensus 159 gV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~--~t~~~~~~~~~g~~~R~l~n~~-----~~~~ 215 (300)
+||+||+|++|.||.+|+.||++|++++.+| +|-..+.. -.|.+.|+|||.+ .+++
T Consensus 244 ~V~~GT~flat~Ea~~s~~~K~~L~~a~~~DT~~tp~~dmf-e~G~~vqvlk~g~~f~~ra~kl 306 (418)
T cd04742 244 FIVTGSINQCTVEAGTSDAVKDLLQKAGVQDTAYAPAADMF-ELGAKVQVLKRGTLFPARANKL 306 (418)
T ss_pred EEeeccHHHhCccccCCHHHHHHHHhCCCCCeEEecccccc-cCCceehhhhhcccchHHHHHH
Confidence 9999999999999999999999999987655 33222110 1378899999998 6665
No 6
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=100.00 E-value=1.7e-37 Score=295.27 Aligned_cols=187 Identities=24% Similarity=0.312 Sum_probs=152.2
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCC-c-EEeeeecCCCc---
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTER-P-FGVGVVLAFPH--- 76 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~-P-~gvnl~~~~~~--- 76 (300)
.|+++||++||||||||+.|+|+++||+||||||+||+|+++ +.++++++++|+++|+++++ | |||||+.+.++
T Consensus 10 ~f~~~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag-~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~ 88 (444)
T TIGR02814 10 AFREDYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAG-GLPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPAL 88 (444)
T ss_pred HHHHHhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCC-CCCHHHHHHHHHHHHHhcCCCCceEEEecccCCCccc
Confidence 488999999999999998679999999999999999999986 58999999999999997765 7 99999986432
Q ss_pred -HHHHHHHHHcCCcEEEEcCC--------------------------------------------CCcHHHHHHHHHCCC
Q 022271 77 -NENIKAILSEKVAVLQVSWG--------------------------------------------EYSEELVLEAHSAGV 111 (300)
Q Consensus 77 -~~~~~~~~e~g~~~i~~~~G--------------------------------------------~~~~~~v~~~~~~G~ 111 (300)
.+.++.++++++++|..+.+ .||++.++++++.|+
T Consensus 89 e~~~v~l~l~~~V~~veasa~~~~~p~~v~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~ 168 (444)
T TIGR02814 89 EWGLVDLLLRHGVRIVEASAFMQLTPALVRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGR 168 (444)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCC
Confidence 35788999999988766522 122344444554441
Q ss_pred ---------------eEeec----------cChhchHHHHH---HhhC-----CCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 112 ---------------KVVPQ----------DGLISLLPMVV---DLIG-----DRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 112 ---------------~v~~~----------~~~~~ll~~v~---~~~~-----~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
..+.. .+++.|+|+|. +.+. ..+|||++||||.|+++++++|+||||
T Consensus 169 it~eEA~~a~~~g~aD~Ivve~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAd 248 (444)
T TIGR02814 169 ITREEAELARRVPVADDICVEADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGAD 248 (444)
T ss_pred CCHHHHHHHHhCCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCCc
Confidence 11111 34788999986 4441 126899999999999999999999999
Q ss_pred EEEeccccccCcccCCCHHHHHHHHcCCCcc
Q 022271 159 GICLGTRFVASEESYAHPEYKRKLVEMDKTE 189 (300)
Q Consensus 159 gV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~ 189 (300)
+||+||+|++|.||.+|+.||++|++++.+|
T Consensus 249 gV~~GT~flat~Esgas~~~K~~L~~a~~~D 279 (444)
T TIGR02814 249 FIVTGSVNQCTVEAGTSDNVKKLLAKADVQD 279 (444)
T ss_pred EEEeccHHHhCccccCCHHHHHHHHhCCCcC
Confidence 9999999999999999999999999976655
No 7
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.92 E-value=1.2e-23 Score=187.44 Aligned_cols=189 Identities=46% Similarity=0.751 Sum_probs=159.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC---CcHHHHHHHHHc
Q 022271 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF---PHNENIKAILSE 86 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~---~~~~~~~~~~e~ 86 (300)
++||++|||. |+++++++.+++++|++|+++.. +.+++++.+.++++++..+.|+++|++.+. ...+.++.+.+.
T Consensus 2 ~~pi~~a~m~-g~~~~~~~~~~~~~G~ig~i~~~-~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 79 (236)
T cd04730 2 RYPIIQAPMA-GVSTPELAAAVSNAGGLGFIGAG-YLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEE 79 (236)
T ss_pred CCCEECCCCC-CCCCHHHHHHHHhCCCccccCCC-CCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhC
Confidence 6899999999 89999999999999999999764 679999999999999876789999999986 557789999999
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHCCCeEeec--------------------c-------------ChhchHHHHHHhhCCC
Q 022271 87 KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ--------------------D-------------GLISLLPMVVDLIGDR 133 (300)
Q Consensus 87 g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~--------------------~-------------~~~~ll~~v~~~~~~~ 133 (300)
+++.|.++.+ .+.++++.+++.++.++.. . ..+.++.++++.+
T Consensus 80 g~d~v~l~~~-~~~~~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--- 155 (236)
T cd04730 80 GVPVVSFSFG-PPAEVVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--- 155 (236)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh---
Confidence 9999999866 4577787777777666543 0 1244777777776
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCcee
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVL 207 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l 207 (300)
++||+++|||.+++++.+++.+|||||++||+|+.+.|++.+..+|+++.+.+..+.....+ .+|.|.|++
T Consensus 156 ~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 226 (236)
T cd04730 156 DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASPAYKQALLAATAEDTVLTRA---FSGRPARGL 226 (236)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccCCCHHHHHHHHcCCCCCeEEEec---cCCCcccee
Confidence 79999999999999999999999999999999999999999999999999986544222333 248888888
No 8
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.92 E-value=1.2e-24 Score=202.73 Aligned_cols=171 Identities=22% Similarity=0.335 Sum_probs=135.7
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC--CcHHHH
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF--PHNENI 80 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~--~~~~~~ 80 (300)
|++.+++++||+++||. ++|+++|+.+++++||+|+++. + ++++++.++++++|. ++.+|..... ...+.+
T Consensus 27 l~~~~~l~~Piv~apM~-~vt~~~ma~ava~~GglGvi~~-~-~~~~~~~~~i~~vk~----~l~v~~~~~~~~~~~~~~ 99 (325)
T cd00381 27 LTKNITLNIPLVSAPMD-TVTESEMAIAMARLGGIGVIHR-N-MSIEEQAEEVRKVKG----RLLVGAAVGTREDDKERA 99 (325)
T ss_pred ecCccccCCCEEecCCC-cCCcHHHHHHHHHCCCEEEEeC-C-CCHHHHHHHHHHhcc----CceEEEecCCChhHHHHH
Confidence 56778999999999998 8999999999999999999986 3 588999999988873 4556654432 336789
Q ss_pred HHHHHcCCcEEEEc--CCCCc--HHHHHHHHHCC--CeEeec--------------------------------------
Q 022271 81 KAILSEKVAVLQVS--WGEYS--EELVLEAHSAG--VKVVPQ-------------------------------------- 116 (300)
Q Consensus 81 ~~~~e~g~~~i~~~--~G~~~--~~~v~~~~~~G--~~v~~~-------------------------------------- 116 (300)
+.++++++++|.++ .|.+. .+.++.+++.+ +.++..
T Consensus 100 ~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g 179 (325)
T cd00381 100 EALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVG 179 (325)
T ss_pred HHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCC
Confidence 99999999998764 35432 45677777765 565531
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHH
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKR 180 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~ 180 (300)
.+.+.+++++.++++..++|||++|||.++++++++|++|||+|+|||+|+.|+||+.+-.+|+
T Consensus 180 ~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~ 243 (325)
T cd00381 180 VPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEIN 243 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEEC
Confidence 1245577777776643369999999999999999999999999999999999999997765443
No 9
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.91 E-value=8e-24 Score=199.22 Aligned_cols=174 Identities=22% Similarity=0.324 Sum_probs=135.2
Q ss_pred ccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC----CCCHHHHHHHHHH---------HHhhcCCcE----
Q 022271 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD----WEAPDYLRDLIRK---------TRSLTERPF---- 66 (300)
Q Consensus 4 ~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~----~~~~~~l~~~i~~---------~r~~~~~P~---- 66 (300)
...+++++||+++||. |+++++|+++++++|++|++++.+ +.+++.+.++|.+ +++++++||
T Consensus 41 ~~~~~i~~Piv~a~M~-gVt~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l 119 (368)
T PRK08649 41 IDAYRFEIPIIASPMD-AVVSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEPIKPEL 119 (368)
T ss_pred ecceeccCcEeccCCc-ccCCHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCCCCHHH
Confidence 4567799999999998 899999999999999999998422 4589999998874 366778888
Q ss_pred -----------EeeeecCC---CcHHHHHHHHHcCCcEEEEcCC---------C-CcHHHHHHHHHCCCeEee-c-----
Q 022271 67 -----------GVGVVLAF---PHNENIKAILSEKVAVLQVSWG---------E-YSEELVLEAHSAGVKVVP-Q----- 116 (300)
Q Consensus 67 -----------gvnl~~~~---~~~~~~~~~~e~g~~~i~~~~G---------~-~~~~~v~~~~~~G~~v~~-~----- 116 (300)
+||+.... ...+.++.++++|+++|.+++. . .+..+++.+++.++.|++ .
T Consensus 120 ~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e 199 (368)
T PRK08649 120 ITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYT 199 (368)
T ss_pred HHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHH
Confidence 78775432 2468899999999999998641 1 145667777778888776 2
Q ss_pred ------------------c--------------ChhchHHHHHHhhC----C---CCCcEEEccCCCChHHHHHHHHCCC
Q 022271 117 ------------------D--------------GLISLLPMVVDLIG----D---RDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 117 ------------------~--------------~~~~ll~~v~~~~~----~---~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
. +++..+.+++++.+ + .++|||++|||.++.|+++||++||
T Consensus 200 ~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGA 279 (368)
T PRK08649 200 TALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGA 279 (368)
T ss_pred HHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCC
Confidence 0 12223344443321 1 1599999999999999999999999
Q ss_pred cEEEeccccccCcccCCCHHH
Q 022271 158 QGICLGTRFVASEESYAHPEY 178 (300)
Q Consensus 158 dgV~~GT~fl~t~Es~~~~~~ 178 (300)
|+|+|||+|+.|.||+.+-.|
T Consensus 280 d~Vm~Gs~fa~t~Espg~~~~ 300 (368)
T PRK08649 280 DAVMLGSPLARAAEAPGRGWH 300 (368)
T ss_pred CeecccchhcccccCCCcccc
Confidence 999999999999999998755
No 10
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.91 E-value=5.3e-23 Score=194.56 Aligned_cols=173 Identities=18% Similarity=0.335 Sum_probs=129.8
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeee----------
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGV---------- 70 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl---------- 70 (300)
.|++.|++++||||+||. ++++++||+|+|++||+|+|+. + +++++++++|+++|+.. ..+|..|.
T Consensus 34 ~lt~~l~l~iPIvsApMd-~Vt~~~lA~AvA~aGGlGvI~~-~-~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~ 110 (404)
T PRK06843 34 QLTKNISLNIPFLSSAMD-TVTESQMAIAIAKEGGIGIIHK-N-MSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIF 110 (404)
T ss_pred hhhhccCCCCCEecCCCC-CCCCHHHHHHHHHCCCEEEecC-C-CCHHHHHHHHHHHHhhcCCCceeecccccccchhhe
Confidence 367899999999999998 8999999999999999999986 3 69999999999999764 34454443
Q ss_pred ------------------------------------ecCC--CcHHHHHHHHHcCCcEEEEcC--CCC--cHHHHHHHHH
Q 022271 71 ------------------------------------VLAF--PHNENIKAILSEKVAVLQVSW--GEY--SEELVLEAHS 108 (300)
Q Consensus 71 ------------------------------------~~~~--~~~~~~~~~~e~g~~~i~~~~--G~~--~~~~v~~~~~ 108 (300)
-... ...+.++.++++|+++|.+.. |.+ ..+.++.+++
T Consensus 111 t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 111 TAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred eccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 0100 123688999999999998643 321 1234445544
Q ss_pred C--CCeEee-c-------------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 109 A--GVKVVP-Q-------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 109 ~--G~~v~~-~-------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
. +..++. . .+.+..+..+.+.++..++|||+.|||.++.|
T Consensus 191 ~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~D 270 (404)
T PRK06843 191 KYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGD 270 (404)
T ss_pred hCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHH
Confidence 2 333322 1 12344555555554334799999999999999
Q ss_pred HHHHHHCCCcEEEeccccccCcccCCCHH
Q 022271 149 YVAALSLGAQGICLGTRFVASEESYAHPE 177 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t~Es~~~~~ 177 (300)
+++||++||++|+|||+|..|.||+.+-.
T Consensus 271 i~KALalGA~aVmvGs~~agt~Espg~~~ 299 (404)
T PRK06843 271 VVKAIAAGADSVMIGNLFAGTKESPSEEI 299 (404)
T ss_pred HHHHHHcCCCEEEEcceeeeeecCCCcEE
Confidence 99999999999999999999999998753
No 11
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.83 E-value=4.1e-20 Score=173.77 Aligned_cols=175 Identities=20% Similarity=0.292 Sum_probs=124.9
Q ss_pred cccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC----CCCHHHHHHHHHH-------------HHhhcCCcEE
Q 022271 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD----WEAPDYLRDLIRK-------------TRSLTERPFG 67 (300)
Q Consensus 5 ~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~----~~~~~~l~~~i~~-------------~r~~~~~P~g 67 (300)
..+.+++||++|||+ |+++++|+.++++.|++|+++..+ +.+++.+..+|.. ++++...|+.
T Consensus 39 ~~~~l~~PivlAPMa-gVtd~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~ 117 (369)
T TIGR01304 39 DAYRFELPFIAHPMD-ALVSPEFAIELGELGGLGVLNLEGLWGRHEDPDPAIAKIAEAYEEGDQAAATRLLQELHAAPLK 117 (369)
T ss_pred cceecCCceeecCCC-cccCHHHHHHHHHcCCcccccchHHHhcCCCHHHHHHHHhhcCCChHHHHHHHHHHHcCCCccC
Confidence 456789999999999 899999999999999999987521 3455544444433 2333344444
Q ss_pred eeee-----------------cC-CCcHHHHHHHHHcCCcEEEEc---------CC-CCcHHHHHHHHHCCCeEee-c--
Q 022271 68 VGVV-----------------LA-FPHNENIKAILSEKVAVLQVS---------WG-EYSEELVLEAHSAGVKVVP-Q-- 116 (300)
Q Consensus 68 vnl~-----------------~~-~~~~~~~~~~~e~g~~~i~~~---------~G-~~~~~~v~~~~~~G~~v~~-~-- 116 (300)
.|++ .. ....+.++.++++|+++|.++ .| ..+.++.+..++.++.|+. .
T Consensus 118 p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~ 197 (369)
T TIGR01304 118 PELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVN 197 (369)
T ss_pred hHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCC
Confidence 4432 11 124688999999999999875 12 2355666667777888775 1
Q ss_pred ---------------------------------cChhchHHHHHHhh----CC---CCCcEEEccCCCChHHHHHHHHCC
Q 022271 117 ---------------------------------DGLISLLPMVVDLI----GD---RDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 117 ---------------------------------~~~~~ll~~v~~~~----~~---~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.++...++++..+. ++ ..+|||++|||.++.|++++|++|
T Consensus 198 t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlG 277 (369)
T TIGR01304 198 DYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACG 277 (369)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcC
Confidence 11223455555432 11 249999999999999999999999
Q ss_pred CcEEEeccccccCcccCCCHHHHH
Q 022271 157 AQGICLGTRFVASEESYAHPEYKR 180 (300)
Q Consensus 157 AdgV~~GT~fl~t~Es~~~~~~k~ 180 (300)
||+|+|||+|+.+.||+..-.|--
T Consensus 278 AdaV~iGt~~a~a~Eapg~~~~w~ 301 (369)
T TIGR01304 278 ADAVVLGSPLARAAEAPGRGYFWP 301 (369)
T ss_pred CCEeeeHHHHHhhhcCCCCCCccc
Confidence 999999999999999988755443
No 12
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.82 E-value=4.2e-19 Score=173.83 Aligned_cols=173 Identities=19% Similarity=0.344 Sum_probs=125.6
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-------------------
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT------------------- 62 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~------------------- 62 (300)
.+++.|++++|||++||. +++.++||.|++++||+|+|.. + .+++....+++++++..
T Consensus 46 ~lt~~~~~~~Pivsa~M~-~vt~~~lA~Ama~aGGiGfI~~-~-as~E~q~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA 122 (505)
T PLN02274 46 RLSRNIPLSIPCVSSPMD-TVTESDMAIAMAALGGIGIVHY-N-NTAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSL 122 (505)
T ss_pred ccccccCcCCCEeccCCc-ccchHHHHHHHHhCCCeEEEcC-C-CCHHHHHHHHHHhhcccccccCCCeeeCCCCcHHHH
Confidence 367899999999999998 8999999999999999999986 3 68888888888877421
Q ss_pred ---------------------CCcEEee------------------------e---------------------------
Q 022271 63 ---------------------ERPFGVG------------------------V--------------------------- 70 (300)
Q Consensus 63 ---------------------~~P~gvn------------------------l--------------------------- 70 (300)
++++|+= +
T Consensus 123 ~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVV 202 (505)
T PLN02274 123 DELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLV 202 (505)
T ss_pred HHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 0111100 0
Q ss_pred ---------e-----------cC--C-------------------CcHHHHHHHHHcCCcEEEEcC--CCCcH--HHHHH
Q 022271 71 ---------V-----------LA--F-------------------PHNENIKAILSEKVAVLQVSW--GEYSE--ELVLE 105 (300)
Q Consensus 71 ---------~-----------~~--~-------------------~~~~~~~~~~e~g~~~i~~~~--G~~~~--~~v~~ 105 (300)
+ +. . ...+.++.++++|+++|.+.. |.... +.+++
T Consensus 203 D~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ 282 (505)
T PLN02274 203 NEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKY 282 (505)
T ss_pred cCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHH
Confidence 0 00 0 013667888888999887753 22111 45666
Q ss_pred HHHC--CCeEeec-----------------------------------------cChhchHHHHHHhhCCCCCcEEEccC
Q 022271 106 AHSA--GVKVVPQ-----------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGG 142 (300)
Q Consensus 106 ~~~~--G~~v~~~-----------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGG 142 (300)
+++. +..++.. .+.+..++++++.. ++|||++||
T Consensus 283 ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~---~vpVIadGG 359 (505)
T PLN02274 283 IKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH---GVPVIADGG 359 (505)
T ss_pred HHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc---CCeEEEeCC
Confidence 6552 3444321 01333466666654 799999999
Q ss_pred CCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHH
Q 022271 143 IVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKR 180 (300)
Q Consensus 143 I~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~ 180 (300)
|.++.|+++||++||++|+|||+|..|.||+.+..||+
T Consensus 360 I~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~ 397 (505)
T PLN02274 360 ISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQD 397 (505)
T ss_pred CCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeC
Confidence 99999999999999999999999999999999887654
No 13
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.79 E-value=9.8e-19 Score=166.89 Aligned_cols=170 Identities=15% Similarity=0.102 Sum_probs=128.9
Q ss_pred cccccCCccceecCCCCCCCCc----HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC----
Q 022271 3 WRGMLGFEYGIVQAPLGPDISG----PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF---- 74 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~----~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~---- 74 (300)
.++.+++++||+++||++|..+ .+|+.+++++|+++.++.+ ..+|+.++..++.+++.+++|||||.....
T Consensus 70 ~~~~~~i~~Pi~~~~Ms~Gs~s~~a~~aLa~aa~~aG~~~~~Geg-g~~~~~~~~~~~~i~q~~~~~fGv~~~~~~~~~~ 148 (392)
T cd02808 70 AEKPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEG-GELPEEREGGGDIIKQVASGRFGVRPEYLNKADA 148 (392)
T ss_pred cCCccccccceEecCCCCCcccHHHHHHHHHHHHhcCCceeecCC-CCCHHHHhhhhheEEEecCCCCccCHHHcccCcE
Confidence 4677899999999999965543 7999999999999999985 589999999999999999999999863210
Q ss_pred ----------------------------------------C-------c----HHHHHHHHHcC--CcEEEEcCCC-CcH
Q 022271 75 ----------------------------------------P-------H----NENIKAILSEK--VAVLQVSWGE-YSE 100 (300)
Q Consensus 75 ----------------------------------------~-------~----~~~~~~~~e~g--~~~i~~~~G~-~~~ 100 (300)
| . .+.++.+.+.. .+++..-.+. .+.
T Consensus 149 ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~ 228 (392)
T cd02808 149 IEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEG 228 (392)
T ss_pred EEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHH
Confidence 0 0 23455555543 4555443222 245
Q ss_pred HHHHHHHHCCCeEeec-------------------cChhchHHHHHHhhCC----CCCcEEEccCCCChHHHHHHHHCCC
Q 022271 101 ELVLEAHSAGVKVVPQ-------------------DGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~-------------------~~~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
++...++..|+..+.. .+++..++++++++.. .++|||++|||.++.|++++|++||
T Consensus 229 ~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGA 308 (392)
T cd02808 229 DIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGA 308 (392)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCC
Confidence 5555555555665543 2356678888887631 2699999999999999999999999
Q ss_pred cEEEeccccccCcccC
Q 022271 158 QGICLGTRFVASEESY 173 (300)
Q Consensus 158 dgV~~GT~fl~t~Es~ 173 (300)
|+|++||+|+.+.+|.
T Consensus 309 d~V~ig~~~l~al~c~ 324 (392)
T cd02808 309 DAVGIGTAALIALGCI 324 (392)
T ss_pred CeeeechHHHHhcchH
Confidence 9999999999998874
No 14
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.78 E-value=5.2e-18 Score=156.65 Aligned_cols=160 Identities=18% Similarity=0.175 Sum_probs=121.8
Q ss_pred ccccCC--ccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC-
Q 022271 4 RGMLGF--EYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF- 74 (300)
Q Consensus 4 ~~~lg~--~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~- 74 (300)
+++||. ++||+++||+ |.+ ...|+.+++++|..+.++.....++++++ +..++|+++|++...
T Consensus 56 ~~~lg~~~~~Pi~iapm~-g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~-------~~~~~~~~~ql~~~~~ 127 (299)
T cd02809 56 TTLLGQKLAMPFGIAPTG-LQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVA-------AAAPGPRWFQLYVPRD 127 (299)
T ss_pred eEECCeecCCCeeeCccc-ccccCCchHHHHHHHHHHHcCCCEEecCCCcCCHHHHH-------HhcCCCeEEEEeecCC
Confidence 457776 5899999997 565 45999999999999988763223444333 333479999998753
Q ss_pred Cc--HHHHHHHHHcCCcEEEEcCCCCc------HHHHHHHHHC-CCeEeec-----------------------------
Q 022271 75 PH--NENIKAILSEKVAVLQVSWGEYS------EELVLEAHSA-GVKVVPQ----------------------------- 116 (300)
Q Consensus 75 ~~--~~~~~~~~e~g~~~i~~~~G~~~------~~~v~~~~~~-G~~v~~~----------------------------- 116 (300)
+. .+.++.+.+.++++|.++.++|. .+.++++++. ++.++..
T Consensus 128 ~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~ 207 (299)
T cd02809 128 REITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQL 207 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCC
Confidence 22 45677778889999999998875 3667776653 4444321
Q ss_pred ---cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCccc
Q 022271 117 ---DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172 (300)
Q Consensus 117 ---~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es 172 (300)
.+++.+++++++.+.. ++|||++|||.+++|+.++|++|||+|++||+|+....+
T Consensus 208 ~~g~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~ 265 (299)
T cd02809 208 DGAPATIDALPEIVAAVGG-RIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAA 265 (299)
T ss_pred CCCcCHHHHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHh
Confidence 2467789999888732 599999999999999999999999999999999987543
No 15
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.78 E-value=4.3e-18 Score=166.64 Aligned_cols=55 Identities=18% Similarity=0.339 Sum_probs=50.7
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~ 60 (300)
+++.+++++|||++||. +++.++||.+++++||+|+|+. .+++|+..++++++++
T Consensus 43 l~~~~~l~~Pii~a~M~-~vt~~~ma~a~a~~GglGvi~~--~~~~e~~~~~v~kvk~ 97 (495)
T PTZ00314 43 LTRNIRLKIPIVSSPMD-TVTEHKMAIAMALMGGIGVIHN--NCSIEEQVEEVRKVKR 97 (495)
T ss_pred ccCCcccCCceeecCcc-ccccHHHHHHHHHCCCeEEecC--CCCHHHHHHHHhhccc
Confidence 67889999999999999 7999999999999999999975 4799999999999985
No 16
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.76 E-value=2.7e-17 Score=153.18 Aligned_cols=168 Identities=23% Similarity=0.348 Sum_probs=125.7
Q ss_pred ccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc---------CCcEEeeeecCC
Q 022271 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT---------ERPFGVGVVLAF 74 (300)
Q Consensus 4 ~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~---------~~P~gvnl~~~~ 74 (300)
++-+.++.|||.+||. .+++.+||.++++.||+|+|+. + .+.++..++++++++.. ...+++-+-...
T Consensus 31 ~~~~~l~iPivsa~MD-tVte~~mAiama~~Gglgvih~-~-~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~ 107 (352)
T PF00478_consen 31 TRNITLKIPIVSAPMD-TVTESEMAIAMARLGGLGVIHR-N-MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD 107 (352)
T ss_dssp STSEEESSSEEE-SST-TTSSHHHHHHHHHTTSEEEEES-S-SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESST
T ss_pred cCCEeecCceEecCcc-ccchHHHHHHHHHhcCCceecC-C-CCHHHHHHHHhhhccccccccccccccceEEEEecCCH
Confidence 4566789999999999 8999999999999999999997 3 68888888898887631 223455555444
Q ss_pred CcHHHHHHHHHcCCcEEEEc--CCCCcHH---HHHHHHH-CC-CeEeec-------------------------------
Q 022271 75 PHNENIKAILSEKVAVLQVS--WGEYSEE---LVLEAHS-AG-VKVVPQ------------------------------- 116 (300)
Q Consensus 75 ~~~~~~~~~~e~g~~~i~~~--~G~~~~~---~v~~~~~-~G-~~v~~~------------------------------- 116 (300)
.+.+.++.+++.+++++.+. .|. ... .++.+++ .+ +.|+..
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~g~-s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtT 186 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAHGH-SEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTT 186 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SSTT-SHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHH
T ss_pred HHHHHHHHHHHcCCCEEEccccCcc-HHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccccc
Confidence 56788999999999999874 344 232 2333332 22 444321
Q ss_pred -------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 117 -------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 117 -------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.+.++.+.++.++.++.++||||.|||.++.|+.+||++|||.||||+.|..|.||+..
T Consensus 187 r~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~ 252 (352)
T PF00478_consen 187 REVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGE 252 (352)
T ss_dssp HHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSE
T ss_pred ccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCc
Confidence 34667777888776555899999999999999999999999999999999999999854
No 17
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.72 E-value=1.2e-16 Score=149.06 Aligned_cols=160 Identities=25% Similarity=0.342 Sum_probs=119.9
Q ss_pred ccC--CccceecCCCCCCCC------cHHHHHHHHhCC---ceEEecCCCCCCHHHHHHHHHHHHhhcC-CcEEeeeecC
Q 022271 6 MLG--FEYGIVQAPLGPDIS------GPELVAAVANAG---GLGLLRAPDWEAPDYLRDLIRKTRSLTE-RPFGVGVVLA 73 (300)
Q Consensus 6 ~lg--~~~Pii~apM~~g~s------~~~la~avs~aG---glG~i~~~~~~~~~~l~~~i~~~r~~~~-~P~gvnl~~~ 73 (300)
++| +++||+++||+ |.+ +++|+.+++++| ++|..+++ +.+|+.. +.++.+|+.+. .||.+|+...
T Consensus 46 ~~G~~l~~Pi~ia~mt-Gg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~-~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~ 122 (326)
T cd02811 46 FLGKRLSAPLLISAMT-GGSEKAKEINRNLAEAAEELGIAMGVGSQRAA-LEDPELA-ESFTVVREAPPNGPLIANLGAV 122 (326)
T ss_pred ECCceecCCEEEeCCC-CCChHHHHHHHHHHHHHHHcCCCeEecCchhh-ccChhhh-hHHHHHHHhCCCceEEeecCcc
Confidence 455 79999999999 667 799999999999 88888764 6788855 88999999876 9999998764
Q ss_pred C----Cc----------------------------------H---HHHHHHHHc-CCcEEEE--cCCCCcHHHHHHHHHC
Q 022271 74 F----PH----------------------------------N---ENIKAILSE-KVAVLQV--SWGEYSEELVLEAHSA 109 (300)
Q Consensus 74 ~----~~----------------------------------~---~~~~~~~e~-g~~~i~~--~~G~~~~~~v~~~~~~ 109 (300)
. .. . +.++.+.+. +++++.. .+|. ..+.+..+.++
T Consensus 123 ~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~-s~~~a~~l~~~ 201 (326)
T cd02811 123 QLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGI-SRETAKRLADA 201 (326)
T ss_pred ccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC-CHHHHHHHHHc
Confidence 3 10 1 334555554 6677654 2333 35667777777
Q ss_pred CCeEeec-------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 110 GVKVVPQ-------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 110 G~~v~~~-------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
|+..+.. .++...++++++.+. ++|||++|||.++.|+.++|++|||
T Consensus 202 Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~--~ipIiasGGIr~~~dv~kal~lGAd 279 (326)
T cd02811 202 GVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP--DLPLIASGGIRNGLDIAKALALGAD 279 (326)
T ss_pred CCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHhCCC
Confidence 7766542 112345666666653 7999999999999999999999999
Q ss_pred EEEeccccccCcc
Q 022271 159 GICLGTRFVASEE 171 (300)
Q Consensus 159 gV~~GT~fl~t~E 171 (300)
+|++|++|+..--
T Consensus 280 ~V~i~~~~L~~~~ 292 (326)
T cd02811 280 LVGMAGPFLKAAL 292 (326)
T ss_pred EEEEcHHHHHHHh
Confidence 9999999997653
No 18
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.71 E-value=1.4e-16 Score=150.02 Aligned_cols=155 Identities=26% Similarity=0.349 Sum_probs=118.7
Q ss_pred CccceecCCCCCCCCc------HHHHHHHHhCC---ceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeeeecCCC---
Q 022271 9 FEYGIVQAPLGPDISG------PELVAAVANAG---GLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFP--- 75 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~------~~la~avs~aG---glG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~--- 75 (300)
+++||+++||+ |.|. ++||.+++++| ++|....+ +.+|+ +++.++.+|+.+ ++||.+||.....
T Consensus 59 l~~Pi~i~~Mt-Ggs~~~~~in~~La~~a~~~G~~~~~Gs~~~~-~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~ 135 (352)
T PRK05437 59 LSAPFLINAMT-GGSEKAKEINRKLAEAAEELGIAMGVGSQRAA-LKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGY 135 (352)
T ss_pred ecCCEEecccC-CCChhHHHHHHHHHHHHHHcCCCeEecccHhh-ccChh-hHHHHHHHHHHCCCceEEeecCccccCCC
Confidence 79999999999 6676 89999999999 89988774 67888 999999999987 8999999987432
Q ss_pred -c----------------------------------H---HHHHHHHHc-CCcEEEE--cCCCCcHHHHHHHHHCCCeEe
Q 022271 76 -H----------------------------------N---ENIKAILSE-KVAVLQV--SWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 76 -~----------------------------------~---~~~~~~~e~-g~~~i~~--~~G~~~~~~v~~~~~~G~~v~ 114 (300)
. . +.++.+.+. +++++.. .+|. ..+.++.+.++|+..+
T Consensus 136 ~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~-s~~~a~~l~~~Gvd~I 214 (352)
T PRK05437 136 GVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGI-SKETAKRLADAGVKAI 214 (352)
T ss_pred CHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCC-cHHHHHHHHHcCCCEE
Confidence 0 1 334444443 6676654 2233 3566667777776665
Q ss_pred ec-----------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 115 PQ-----------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 115 ~~-----------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
.. .++...++++++.+ .++|||++|||.++.|+.++|++|||+|++||.
T Consensus 215 ~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~--~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~ 292 (352)
T PRK05437 215 DVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL--PDLPIIASGGIRNGLDIAKALALGADAVGMAGP 292 (352)
T ss_pred EECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHH
Confidence 42 11334666677663 279999999999999999999999999999999
Q ss_pred cccC
Q 022271 166 FVAS 169 (300)
Q Consensus 166 fl~t 169 (300)
|+..
T Consensus 293 ~l~~ 296 (352)
T PRK05437 293 FLKA 296 (352)
T ss_pred HHHH
Confidence 9986
No 19
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.70 E-value=6.6e-16 Score=151.47 Aligned_cols=59 Identities=27% Similarity=0.392 Sum_probs=52.1
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCH
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 176 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~ 176 (300)
+++..+++++++.+..++|||+.|||.++.|+++||++|||.|++||.|..+.||+..-
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~ 373 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEV 373 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCce
Confidence 35678888888764447999999999999999999999999999999999999998763
No 20
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.69 E-value=1.3e-15 Score=139.71 Aligned_cols=167 Identities=18% Similarity=0.137 Sum_probs=122.2
Q ss_pred cCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHc
Q 022271 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSE 86 (300)
Q Consensus 7 lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~ 86 (300)
+-+..|||.|.|. .+.+.+||.+.++.|++|+++- + +++|+..+++++...-..+-..|-+-....+.+.++.++++
T Consensus 42 ~~~~iPii~AnMd-tv~~~~mA~~la~~g~~~~iHk-~-~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a 118 (343)
T TIGR01305 42 TYSGVPIIAANMD-TVGTFEMAAALSQHSIFTAIHK-H-YSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEA 118 (343)
T ss_pred eeeCCceEecCCC-cccCHHHHHHHHHCCCeEEEee-C-CCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhc
Confidence 3478999999998 8999999999999999999997 3 58988888887755422222222111122345678888887
Q ss_pred C--CcEEEEc--CCC-------------------------CcHHHHHHHHHCCCeEeec-----------------cChh
Q 022271 87 K--VAVLQVS--WGE-------------------------YSEELVLEAHSAGVKVVPQ-----------------DGLI 120 (300)
Q Consensus 87 g--~~~i~~~--~G~-------------------------~~~~~v~~~~~~G~~v~~~-----------------~~~~ 120 (300)
+ +++|.+. .|. ...+-...+-++|+..+.. .+.+
T Consensus 119 ~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pql 198 (343)
T TIGR01305 119 VPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQL 198 (343)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHH
Confidence 5 8887653 232 1122233333444443321 2578
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCH
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 176 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~ 176 (300)
+.+++++++....++|||+.|||.++.|+++||++|||+|++|+-|..+.|++.+-
T Consensus 199 tAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~ 254 (343)
T TIGR01305 199 SAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEV 254 (343)
T ss_pred HHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCccee
Confidence 89999999886557999999999999999999999999999999999999988653
No 21
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.68 E-value=1.2e-15 Score=139.89 Aligned_cols=164 Identities=18% Similarity=0.136 Sum_probs=117.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHc--C
Q 022271 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSE--K 87 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~--g 87 (300)
..|||.|+|. .+.+.+||.+.++.|++++++- ++++|+..+++++++.....-..|-+-....+.+.++.+++. +
T Consensus 46 giPii~AnMd-TV~~~~mA~~la~~g~~~~iHk--~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g 122 (346)
T PRK05096 46 GVPIIAANMD-TVGTFEMAKALASFDILTAVHK--HYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPA 122 (346)
T ss_pred CCceEecCCC-ccccHHHHHHHHHCCCeEEEec--CCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCC
Confidence 3999999998 8999999999999999999997 368998888888776432111222111112235677788874 8
Q ss_pred CcEEEEc--CCCC-------------------------cHHHHHHHHHCCCeEeec-----------------cChhchH
Q 022271 88 VAVLQVS--WGEY-------------------------SEELVLEAHSAGVKVVPQ-----------------DGLISLL 123 (300)
Q Consensus 88 ~~~i~~~--~G~~-------------------------~~~~v~~~~~~G~~v~~~-----------------~~~~~ll 123 (300)
+++|.+. .|.. ..+.++.+-++|+..+.. .+.++.+
T Consensus 123 ~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV 202 (346)
T PRK05096 123 LNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAV 202 (346)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHH
Confidence 8888653 2321 122233333344443321 2356667
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCH
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 176 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~ 176 (300)
.++.++.++.++|||+.|||.+..|+++||++|||.||||+-|..|.||+..-
T Consensus 203 ~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~ 255 (346)
T PRK05096 203 IECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEI 255 (346)
T ss_pred HHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcE
Confidence 77777665558999999999999999999999999999999999999998653
No 22
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.63 E-value=9.5e-15 Score=130.20 Aligned_cols=146 Identities=15% Similarity=0.217 Sum_probs=104.2
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCC----------------------CHHHHHHHHHHHHhhcCCcEEee
Q 022271 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWE----------------------APDYLRDLIRKTRSLTERPFGVG 69 (300)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~----------------------~~~~l~~~i~~~r~~~~~P~gvn 69 (300)
||++|||+ |+++.+|+.++++.+|+++++..+.. ..+.+.+++.++++. +.|+++|
T Consensus 1 ~~~lApMa-g~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~-~~p~~vq 78 (233)
T cd02911 1 PVALASMA-GITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDS-NVLVGVN 78 (233)
T ss_pred CceeeecC-CCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhcc-CCeEEEE
Confidence 89999999 89999999999999999999753311 234555666666543 6799999
Q ss_pred eecCCCc--HHHHHHHHHcCCcEEEEcCCCCcH-------------------HHHHHHHHCCCeEeec------------
Q 022271 70 VVLAFPH--NENIKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 70 l~~~~~~--~~~~~~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~~G~~v~~~------------ 116 (300)
+....+. .+.++.+.+ ..++|.+++|||.+ ++++.+++.++.|...
T Consensus 79 i~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~l 157 (233)
T cd02911 79 VRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVDVDDEEL 157 (233)
T ss_pred ecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHH
Confidence 9987653 344555544 46888888887632 3344444445444432
Q ss_pred ------------------cC---hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 117 ------------------DG---LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 117 ------------------~~---~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
.+ .+..+.+++ + ++|||+.|||.|.+++.+++..|||+|++|+.
T Consensus 158 a~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~---~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 158 ARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--T---ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--C---CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 01 123333333 2 79999999999999999999999999999998
No 23
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.62 E-value=5.5e-15 Score=138.41 Aligned_cols=160 Identities=25% Similarity=0.339 Sum_probs=115.8
Q ss_pred cccC--CccceecCCCCCCCC------cHHHHHHHHhCC---ceEEecCCCCCCHHHHHHHHHHHHh-hcCCcEEeeeec
Q 022271 5 GMLG--FEYGIVQAPLGPDIS------GPELVAAVANAG---GLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGVGVVL 72 (300)
Q Consensus 5 ~~lg--~~~Pii~apM~~g~s------~~~la~avs~aG---glG~i~~~~~~~~~~l~~~i~~~r~-~~~~P~gvnl~~ 72 (300)
++|| +++||+++||+ |.+ +++|+.+++++| ++|...++ +.+|+.... .+.+|+ .++.|+.+|+..
T Consensus 46 ~~~g~~l~~Pi~iaaMt-Gg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~-~~~~~~~~~-~~~vr~~~~~~p~i~nl~~ 122 (333)
T TIGR02151 46 EFLGKRLKAPFYINAMT-GGSEEAGKINRNLARAARELGIPMGVGSQRAA-LKDPETADT-FEVVREEAPNGPLIANIGA 122 (333)
T ss_pred EECCccccCCEEEeCCC-CCchhHHHHHHHHHHHHHHcCCCeEEcCchhh-ccChhhHhH-HHHHHHhCCCCcEEeecCc
Confidence 4455 79999999999 788 899999999999 88877663 667875544 477888 588999999864
Q ss_pred CCC--------------------------------------cH---HHHHHHHHc-CCcEEEE--cCCCCcHHHHHHHHH
Q 022271 73 AFP--------------------------------------HN---ENIKAILSE-KVAVLQV--SWGEYSEELVLEAHS 108 (300)
Q Consensus 73 ~~~--------------------------------------~~---~~~~~~~e~-g~~~i~~--~~G~~~~~~v~~~~~ 108 (300)
... +. +.++.+.+. +++++.. .+|. ..+.++.+.+
T Consensus 123 ~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~-~~~~a~~L~~ 201 (333)
T TIGR02151 123 PQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGI-SKEVAKLLAD 201 (333)
T ss_pred hhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC-CHHHHHHHHH
Confidence 211 01 345555554 6777764 3343 4667777888
Q ss_pred CCCeEeeccC-----------------------------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 109 AGVKVVPQDG-----------------------------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 109 ~G~~v~~~~~-----------------------------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
+|+..+...+ +...++++++. ..++|||++|||.++.|+.++|++|||+
T Consensus 202 aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~--~~~ipVIasGGI~~~~di~kaLalGAd~ 279 (333)
T TIGR02151 202 AGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSD--APDAPIIASGGLRTGLDVAKAIALGADA 279 (333)
T ss_pred cCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhc--CCCCeEEEECCCCCHHHHHHHHHhCCCe
Confidence 8877664311 11234444441 1279999999999999999999999999
Q ss_pred EEeccccccCc
Q 022271 160 ICLGTRFVASE 170 (300)
Q Consensus 160 V~~GT~fl~t~ 170 (300)
|++|+.|+..-
T Consensus 280 V~igr~~L~~~ 290 (333)
T TIGR02151 280 VGMARPFLKAA 290 (333)
T ss_pred ehhhHHHHHHH
Confidence 99999999654
No 24
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=99.61 E-value=1.3e-14 Score=138.22 Aligned_cols=184 Identities=23% Similarity=0.275 Sum_probs=147.4
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc--CCcEEeeeecCCCc---
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPH--- 76 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~~--- 76 (300)
-|++++| +.||+.++|.+..-++++++|.+|||..--++.+++.+++-+.+.|.++-.+. +.-+++|.+..+|+
T Consensus 27 kfsrLtG-r~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~~lepG~t~qfN~ifldpylw~ 105 (717)
T COG4981 27 KFSRLTG-RSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVSLLEPGRTAQFNSIFLDPYLWK 105 (717)
T ss_pred chhhhcC-CCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHhccCCCccceeeEEEechHHhh
Confidence 3789999 69999999997667899999999999999999888999999999999998764 45689998876654
Q ss_pred -----HHHHHHHHHcCC--cEEEEcCCCCcH----HHHHHHHHCCCeEeec-----------------------------
Q 022271 77 -----NENIKAILSEKV--AVLQVSWGEYSE----ELVLEAHSAGVKVVPQ----------------------------- 116 (300)
Q Consensus 77 -----~~~~~~~~e~g~--~~i~~~~G~~~~----~~v~~~~~~G~~v~~~----------------------------- 116 (300)
...++.+...|. +.|.++.|.|.. ++|+.+-.-|+..+..
T Consensus 106 ~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~eg 185 (717)
T COG4981 106 LQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEG 185 (717)
T ss_pred hcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEec
Confidence 456777777764 668889998753 4555555567776643
Q ss_pred -------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-----------CCCcEEEeccccccCccc
Q 022271 117 -------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-----------LGAQGICLGTRFVASEES 172 (300)
Q Consensus 117 -------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-----------lGAdgV~~GT~fl~t~Es 172 (300)
..++....+++.. .+|-|++.|||+++++.+.+|. |--||+.+||+-++|+|+
T Consensus 186 GraGGHHSweDld~llL~tYs~lR~~---~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKEa 262 (717)
T COG4981 186 GRAGGHHSWEDLDDLLLATYSELRSR---DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKEA 262 (717)
T ss_pred CccCCccchhhcccHHHHHHHHHhcC---CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhhc
Confidence 0122233344443 3899999999999999998883 788999999999999999
Q ss_pred CCCHHHHHHHHcCCCcc
Q 022271 173 YAHPEYKRKLVEMDKTE 189 (300)
Q Consensus 173 ~~~~~~k~~i~~a~~t~ 189 (300)
..|+..|++|++++.+|
T Consensus 263 tTSp~vK~~lv~t~Gvd 279 (717)
T COG4981 263 TTSPAVKEALVATQGVD 279 (717)
T ss_pred cCCHHHHHHHhhCCCCC
Confidence 99999999999986555
No 25
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.59 E-value=1.7e-14 Score=140.60 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=68.9
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCC-------CHHHHH--------HHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA-------HPEYKR--------KLV 183 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~-------~~~~k~--------~i~ 183 (300)
.++.+.++.++.+..++|||+.|||.++.|++++|++||++|++|+.|..|.||+. ...||+ ++.
T Consensus 315 ~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~ 394 (479)
T PRK07807 315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVA 394 (479)
T ss_pred HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHh
Confidence 56677777776544479999999999999999999999999999999999999998 455666 554
Q ss_pred cC--CCcceEEEecccCCCCCCCceecChhhH
Q 022271 184 EM--DKTEYTDVFGRARWPGAPHRVLQTPFFS 213 (300)
Q Consensus 184 ~a--~~t~~t~~~~~~~~~g~~~R~l~n~~~~ 213 (300)
+. .++.++..+ .++++|++.|.|..
T Consensus 395 ~~~~~~~~~~~~~-----~~~~~eGv~~~~~~ 421 (479)
T PRK07807 395 ARTAGDSAFDRAR-----KALFEEGISTSRMY 421 (479)
T ss_pred cccCccchhhhcc-----cCCCCCCccceeee
Confidence 32 233333333 36788888887654
No 26
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.51 E-value=4.6e-13 Score=130.22 Aligned_cols=57 Identities=32% Similarity=0.452 Sum_probs=50.3
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.+..++++.++.+..++|||+.|||.++.|+++||++||+.|++||.|..|.||+..
T Consensus 312 ~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~ 368 (450)
T TIGR01302 312 QITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGE 368 (450)
T ss_pred HHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCc
Confidence 456777787766445799999999999999999999999999999999999999865
No 27
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.48 E-value=1e-12 Score=121.49 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=115.5
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC--cHHHHHHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP--HNENIKAILS 85 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~--~~~~~~~~~e 85 (300)
.+.+|++-+.|. ...+.+||.+..+.|+++.+.- +++|+..+.+++++.. . +-+|+-.... +.+.++.+++
T Consensus 32 ~l~~P~~inAM~-t~in~~LA~~a~~~G~~~i~hK---~~~E~~~sfvrk~k~~--~-L~v~~SvG~t~e~~~r~~~lv~ 104 (321)
T TIGR01306 32 KFKLPVVPANMQ-TIIDEKLAEQLAENGYFYIMHR---FDEESRIPFIKDMQER--G-LFASISVGVKACEYEFVTQLAE 104 (321)
T ss_pred EecCcEEeeccc-hhhhHHHHHHHHHcCCEEEEec---CCHHHHHHHHHhcccc--c-cEEEEEcCCCHHHHHHHHHHHh
Confidence 478999999998 6999999999999999999875 3888877776665432 2 2344444332 3467778888
Q ss_pred cC--CcEEEEcC--CC-------------------------CcHHHHHHHHHCCCeEeec-----------------cC-
Q 022271 86 EK--VAVLQVSW--GE-------------------------YSEELVLEAHSAGVKVVPQ-----------------DG- 118 (300)
Q Consensus 86 ~g--~~~i~~~~--G~-------------------------~~~~~v~~~~~~G~~v~~~-----------------~~- 118 (300)
.+ +++|.+.. |. ...+....+.++|+..+.. .+
T Consensus 105 a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 105 EALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred cCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCc
Confidence 77 57775532 22 1233444455555544321 11
Q ss_pred -hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 119 -LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 119 -~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.+..+++++++. ++|||+.|||.++.|+++||++|||+|++|+.|..|.||+..
T Consensus 185 ~~l~ai~ev~~a~---~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~ 239 (321)
T TIGR01306 185 WQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGE 239 (321)
T ss_pred hHHHHHHHHHHhc---CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCc
Confidence 345677788776 799999999999999999999999999999999999999865
No 28
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.48 E-value=9.3e-13 Score=123.51 Aligned_cols=175 Identities=16% Similarity=0.185 Sum_probs=115.9
Q ss_pred ccccC--CccceecCCCCCCCC--cH----HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS--GP----ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s--~~----~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| +++||+-+||+ ... .+ .++.+..++|....++.....+.|++ .+.. ..+.|+.++|..+..
T Consensus 56 ~~~lG~~~~~Pi~iaP~~-~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~e~v----~~~~-~~~~~~w~Qly~~~d 129 (344)
T cd02922 56 TTILGHKVSLPFFISPAA-LAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEI----VDAR-PPDQPLFFQLYVNKD 129 (344)
T ss_pred eEECCcccCCceeeChHH-HhhhCCchHHHHHHHHHHHcCCCEEecCcccCCHHHH----HHhc-CCCCcEEEEEeecCC
Confidence 45676 68899999997 233 23 88999999998888876433444432 1111 123577788776532
Q ss_pred ---cHHHHHHHHHcCCcEEEEcCCCC---------------------------------------------cHHHHHHHH
Q 022271 76 ---HNENIKAILSEKVAVLQVSWGEY---------------------------------------------SEELVLEAH 107 (300)
Q Consensus 76 ---~~~~~~~~~e~g~~~i~~~~G~~---------------------------------------------~~~~v~~~~ 107 (300)
..+.++.+.+.|++.+.++.+.| ..+.+++++
T Consensus 130 ~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 209 (344)
T cd02922 130 RTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLR 209 (344)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHH
Confidence 25566777777777766543221 012233332
Q ss_pred ----------------------HCCCeEeec-----------cChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHH
Q 022271 108 ----------------------SAGVKVVPQ-----------DGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAA 152 (300)
Q Consensus 108 ----------------------~~G~~v~~~-----------~~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aa 152 (300)
++|+..+.. .+++..++++++.++ ..++|||++|||.+|.|++++
T Consensus 210 ~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~ka 289 (344)
T cd02922 210 KHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKA 289 (344)
T ss_pred HhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHH
Confidence 333332221 235567888887542 126999999999999999999
Q ss_pred HHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 153 LSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
|++||++|++||+|+...++...+...+.+..
T Consensus 290 laLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~ 321 (344)
T cd02922 290 LCLGAKAVGLGRPFLYALSAYGEEGVEKAIQI 321 (344)
T ss_pred HHcCCCEEEECHHHHHHHhhccHHHHHHHHHH
Confidence 99999999999999999988766666665554
No 29
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.48 E-value=6e-13 Score=124.10 Aligned_cols=159 Identities=16% Similarity=0.230 Sum_probs=109.6
Q ss_pred ccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHH--HHHHHHHHhh---cCCcEEeeeecCCCc--HH
Q 022271 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYL--RDLIRKTRSL---TERPFGVGVVLAFPH--NE 78 (300)
Q Consensus 6 ~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l--~~~i~~~r~~---~~~P~gvnl~~~~~~--~~ 78 (300)
.+.++.|+++|||+ |+|+..|...+.+.|+ |+..+. +.+.+.+ .....+.+.. ...|++++++.+.+. .+
T Consensus 5 ~~~~~~~~~lAPM~-g~td~~fR~l~~~~g~-~~~~te-mvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~ 81 (321)
T PRK10415 5 QYQLRNRLIAAPMA-GITDRPFRTLCYEMGA-GLTVSE-MMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMAD 81 (321)
T ss_pred CccCCCCEEecCCC-CCCcHHHHHHHHHHCC-CEEEEc-cEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHH
Confidence 35578899999998 8999999999999885 554442 4443322 1122222211 236889999987764 34
Q ss_pred HHHHHHHcCCcEEEEcCCCCcH-------------------HHHHHHHH-CCCeEeec----------------------
Q 022271 79 NIKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQ---------------------- 116 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~-~G~~v~~~---------------------- 116 (300)
.++.+.+.++++|.+++|||.+ ++++.+++ .+..+...
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~ 161 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC 161 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh
Confidence 4566677899999999999732 12222222 12222210
Q ss_pred ------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccCc
Q 022271 117 ------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASE 170 (300)
Q Consensus 117 ------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t~ 170 (300)
...+.++.++++.+ ++|||+.|||.|.+++.+++. .|||+|++|+.++..+
T Consensus 162 G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~---~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP 231 (321)
T PRK10415 162 GIQALTIHGRTRACLFNGEAEYDSIRAVKQKV---SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 (321)
T ss_pred CCCEEEEecCccccccCCCcChHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCC
Confidence 12456777787776 799999999999999999997 6999999999999864
No 30
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.47 E-value=6.4e-13 Score=123.86 Aligned_cols=158 Identities=19% Similarity=0.290 Sum_probs=112.4
Q ss_pred cCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-----cCCcEEeeeecCCCc--HHH
Q 022271 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-----TERPFGVGVVLAFPH--NEN 79 (300)
Q Consensus 7 lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-----~~~P~gvnl~~~~~~--~~~ 79 (300)
+.+++|+++|||. |+|+..|...+.+.| .+++.+. +.+.+.+....++.+.. .+.|+.+++..+.+. .+.
T Consensus 4 ~~~~~~l~lAPm~-~~t~~~fR~l~~~~g-~~~~~te-mi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~a 80 (319)
T TIGR00737 4 IQLKSRVVLAPMA-GVTDSPFRRLVAEYG-AGLTVCE-MVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEA 80 (319)
T ss_pred ccCCCCEEecCCC-CCCcHHHHHHHHHHC-CCEEEEC-CEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHH
Confidence 3468999999998 899999999999998 5777653 55555554333333322 268999999988763 455
Q ss_pred HHHHHHcCCcEEEEcCCCCcH-------------------HHHHHHHH-CCCeEeec-----------------------
Q 022271 80 IKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQ----------------------- 116 (300)
Q Consensus 80 ~~~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~-~G~~v~~~----------------------- 116 (300)
++.+.+.|++.|.+++|+|.. ++++.+++ .++.+...
T Consensus 81 a~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G 160 (319)
T TIGR00737 81 AKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAG 160 (319)
T ss_pred HHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhC
Confidence 667778899999998887621 22222222 22222110
Q ss_pred -----------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHH-HCCCcEEEeccccccCc
Q 022271 117 -----------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-SLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 -----------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal-~lGAdgV~~GT~fl~t~ 170 (300)
...+..+.++++.+ ++|||+.|||.|++++.+++ ..|||+|++|+.++.-+
T Consensus 161 ~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~---~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P 229 (319)
T TIGR00737 161 AQAVTLHGRTRAQGYSGEANWDIIARVKQAV---RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNP 229 (319)
T ss_pred CCEEEEEcccccccCCCchhHHHHHHHHHcC---CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCC
Confidence 01345566666665 79999999999999999999 57999999999999764
No 31
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.46 E-value=1.3e-12 Score=121.13 Aligned_cols=158 Identities=17% Similarity=0.279 Sum_probs=114.3
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC--cHHHHHHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP--HNENIKAILS 85 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~--~~~~~~~~~e 85 (300)
.+.+|++.++|. ...+.+||....+.|+++.+.- +++|+..+..++.+. ..+-+|+-.... ..+.++.+++
T Consensus 35 ~l~~P~~inAM~-t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~~~r~~~~---~~l~v~~~vg~~~~~~~~~~~Lv~ 107 (326)
T PRK05458 35 TFKLPVVPANMQ-TIIDEKIAEWLAENGYFYIMHR---FDPEARIPFIKDMHE---QGLIASISVGVKDDEYDFVDQLAA 107 (326)
T ss_pred EecCcEEEeccc-chhHHHHHHHHHHcCCEEEEec---CCHHHHHHHHHhccc---cccEEEEEecCCHHHHHHHHHHHh
Confidence 367899999997 6899999999999999999875 388877777644432 223456655432 3467888889
Q ss_pred cCC--cEEEEcC--CC--CcHHHHHHHHHC--CCeEeec--------------------------------------cC-
Q 022271 86 EKV--AVLQVSW--GE--YSEELVLEAHSA--GVKVVPQ--------------------------------------DG- 118 (300)
Q Consensus 86 ~g~--~~i~~~~--G~--~~~~~v~~~~~~--G~~v~~~--------------------------------------~~- 118 (300)
+|+ ++|.+.. |. ...++++++++. +..|+.. .+
T Consensus 108 ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~ 187 (326)
T PRK05458 108 EGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 187 (326)
T ss_pred cCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCc
Confidence 854 9988732 11 123344444431 2333321 11
Q ss_pred -hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 119 -LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 119 -~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.++.++++++++ ++|||+.|||.++.|++++|++|||+|++|+.|+.+.||+..
T Consensus 188 w~l~ai~~~~~~~---~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~ 242 (326)
T PRK05458 188 WQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGK 242 (326)
T ss_pred cHHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCc
Confidence 244577887776 799999999999999999999999999999999999999765
No 32
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.45 E-value=2.7e-12 Score=125.17 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=46.6
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
+.-+-+++++.+..++||||.|||.++.|+++||++||++|++|+.|..|.||+..
T Consensus 314 ~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 314 FSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred HHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCc
Confidence 33444454444334799999999999999999999999999999999999999865
No 33
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.37 E-value=8.6e-12 Score=105.95 Aligned_cols=143 Identities=20% Similarity=0.349 Sum_probs=102.9
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC---------CcHHHHHHHHHcCCcEEEEcC
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF---------PHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~---------~~~~~~~~~~e~g~~~i~~~~ 95 (300)
..||.|+...|..|+-.. ++ +.|+.+|+.++.|+ ++|+... |..+.++.+.+.|+++|.+.+
T Consensus 2 ~~mA~Aa~~gGA~giR~~----~~----~dI~aik~~v~lPI-IGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa 72 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRAN----GV----EDIRAIKKAVDLPI-IGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA 72 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE----SH----HHHHHHHTTB-S-E-EEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-
T ss_pred HHHHHHHHHCCceEEEcC----CH----HHHHHHHHhcCCCE-EEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec
Confidence 478999999999998875 33 57888999999997 5665431 457899999999999999864
Q ss_pred C-C--C--cHHHHHHHHHCCCeEeec--------------------------------cChhchHHHHHHhhCCCCCcEE
Q 022271 96 G-E--Y--SEELVLEAHSAGVKVVPQ--------------------------------DGLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 96 G-~--~--~~~~v~~~~~~G~~v~~~--------------------------------~~~~~ll~~v~~~~~~~~iPVi 138 (300)
- . | ..+++.++|+.+..++.+ .+.+.|+.++++. ++|||
T Consensus 73 T~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~----~~pvI 148 (192)
T PF04131_consen 73 TDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA----DVPVI 148 (192)
T ss_dssp SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT----TSEEE
T ss_pred CCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC----CCcEe
Confidence 2 2 1 368888899988888775 2357788888764 79999
Q ss_pred EccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+-|+|++++++.++|.+||++|++||+.....+ ....|.+++
T Consensus 149 aEGri~tpe~a~~al~~GA~aVVVGsAITrP~~--It~~F~~ai 190 (192)
T PF04131_consen 149 AEGRIHTPEQAAKALELGAHAVVVGSAITRPQE--ITKRFVDAI 190 (192)
T ss_dssp EESS--SHHHHHHHHHTT-SEEEE-HHHH-HHH--HHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHhcCCeEEEECcccCCHHH--HHHHHHHHH
Confidence 999999999999999999999999999877654 344455443
No 34
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.36 E-value=7.4e-12 Score=116.19 Aligned_cols=155 Identities=13% Similarity=0.127 Sum_probs=108.9
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHH-------HHHH----HhhcCCcEEeeeecCCCc--H
Q 022271 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDL-------IRKT----RSLTERPFGVGVVLAFPH--N 77 (300)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~-------i~~~----r~~~~~P~gvnl~~~~~~--~ 77 (300)
.|++.|||+ |+|+..+...+.+-|+.++..+. |.+.+.+... .... +.-.+.|+.++|+...+. .
T Consensus 1 ~~~~lAPMa-g~td~~fR~l~~~~g~~~~~~te-mvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~ 78 (312)
T PRK10550 1 MRVLLAPME-GVLDSLVRELLTEVNDYDLCITE-FLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLA 78 (312)
T ss_pred CCeEEECCC-CCcCHHHHHHHHHhCCCCEEEeC-CEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHH
Confidence 378999999 89999999999999877776653 4443222111 1111 112357999999998764 4
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcH-------------------HHHHHHHHC---CCeEeec-------------------
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHSA---GVKVVPQ------------------- 116 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~~---G~~v~~~------------------- 116 (300)
+.++.+.+.|.+.|.+++|||.+ ++++.++++ +..|...
T Consensus 79 ~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~ 158 (312)
T PRK10550 79 ENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQ 158 (312)
T ss_pred HHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHH
Confidence 55667778899999999998742 222333322 2333221
Q ss_pred ------------------cC---hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccCc
Q 022271 117 ------------------DG---LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASE 170 (300)
Q Consensus 117 ------------------~~---~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t~ 170 (300)
.+ .+..+.++++.+ ++|||+.|||.|++++.+++. -|||+|++|+.++..+
T Consensus 159 ~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~---~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP 231 (312)
T PRK10550 159 QAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL---TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIP 231 (312)
T ss_pred hcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc---CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCc
Confidence 00 244567777776 799999999999999999996 6999999999999874
No 35
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.33 E-value=6.9e-11 Score=104.52 Aligned_cols=133 Identities=20% Similarity=0.324 Sum_probs=102.4
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEE-e------e--eecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFG-V------G--VVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~g-v------n--l~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
.+++.+++++|+.|+... + .+.++++|+.++.|+- . | ++. .+..+.++.+.+.|+++|.+..
T Consensus 26 ~~~a~a~~~~G~~~~~~~----~----~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~-~~~~~~v~~a~~aGad~I~~d~ 96 (221)
T PRK01130 26 AAMALAAVQGGAVGIRAN----G----VEDIKAIRAVVDVPIIGIIKRDYPDSEVYI-TPTLKEVDALAAAGADIIALDA 96 (221)
T ss_pred HHHHHHHHHCCCeEEEcC----C----HHHHHHHHHhCCCCEEEEEecCCCCCCceE-CCCHHHHHHHHHcCCCEEEEeC
Confidence 589999999999998753 3 3578888888899983 2 2 322 2456789999999999888754
Q ss_pred CC-------CcHHHHHHHHH-CCCeEeec-------------------c--------------ChhchHHHHHHhhCCCC
Q 022271 96 GE-------YSEELVLEAHS-AGVKVVPQ-------------------D--------------GLISLLPMVVDLIGDRD 134 (300)
Q Consensus 96 G~-------~~~~~v~~~~~-~G~~v~~~-------------------~--------------~~~~ll~~v~~~~~~~~ 134 (300)
.. ...++++.+++ .|+.++.. . ..+.+++++++.+ +
T Consensus 97 ~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~---~ 173 (221)
T PRK01130 97 TLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV---G 173 (221)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---C
Confidence 32 22578888888 78777653 0 1245677777766 7
Q ss_pred CcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 135 iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+||+++|||.+++++.+++.+|||+|++||.++..
T Consensus 174 iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~ 208 (221)
T PRK01130 174 CPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP 208 (221)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence 99999999999999999999999999999998764
No 36
>PLN02535 glycolate oxidase
Probab=99.26 E-value=3.4e-11 Score=113.35 Aligned_cols=116 Identities=25% Similarity=0.325 Sum_probs=93.3
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-CCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhC
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIG 131 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~ 131 (300)
+.|+++|+.++.|+.|+-+. ..+.++.+.+.|++.|.++. |. . ..+ ...+++..++++++++.
T Consensus 213 ~~i~~lr~~~~~PvivKgV~---~~~dA~~a~~~GvD~I~vsn~GG--r-------~~d----~~~~t~~~L~ev~~av~ 276 (364)
T PLN02535 213 KDIEWLRSITNLPILIKGVL---TREDAIKAVEVGVAGIIVSNHGA--R-------QLD----YSPATISVLEEVVQAVG 276 (364)
T ss_pred HHHHHHHhccCCCEEEecCC---CHHHHHHHHhcCCCEEEEeCCCc--C-------CCC----CChHHHHHHHHHHHHHh
Confidence 56788888889999888663 35668889999999988762 21 0 011 11457889999998874
Q ss_pred CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 132 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 132 ~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
. ++|||++|||.++.|+.++|++||++|++|++|+...++...+.+++.+...
T Consensus 277 ~-~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~~gv~~~l~~l 329 (364)
T PLN02535 277 G-RVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGEDGVRKVIEML 329 (364)
T ss_pred c-CCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccHHHHHHHHHHH
Confidence 2 6999999999999999999999999999999999998888888998887654
No 37
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.26 E-value=8.5e-11 Score=109.39 Aligned_cols=55 Identities=27% Similarity=0.426 Sum_probs=47.0
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
..+-+|.+......+|||+.|||.+..++.+||.+||+.|+||.-+..+.|++..
T Consensus 341 TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGe 395 (503)
T KOG2550|consen 341 TAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGE 395 (503)
T ss_pred cchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcc
Confidence 3455566554445899999999999999999999999999999999999999863
No 38
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.26 E-value=3.1e-11 Score=113.54 Aligned_cols=115 Identities=25% Similarity=0.272 Sum_probs=93.5
Q ss_pred HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC--CCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW--GEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 52 ~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~--G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.|+++|+.|+.|+.|+-+. ..+.++.+.+.|++.|+++. |... + ...+++..||+++++
T Consensus 213 W~di~wlr~~~~~PiivKgV~---~~~dA~~a~~~Gvd~I~VsnhGGrql----------d----~~~~t~~~L~ei~~a 275 (367)
T PLN02493 213 WKDVQWLQTITKLPILVKGVL---TGEDARIAIQAGAAGIIVSNHGARQL----------D----YVPATISALEEVVKA 275 (367)
T ss_pred HHHHHHHHhccCCCEEeecCC---CHHHHHHHHHcCCCEEEECCCCCCCC----------C----CchhHHHHHHHHHHH
Confidence 366888999999999888775 47788899999999998863 2211 0 114678999999998
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
+.. ++|||++|||.+|.|+.++|++||++|.+|++|+...++..++...+.|-.
T Consensus 276 v~~-~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~ 329 (367)
T PLN02493 276 TQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQM 329 (367)
T ss_pred hCC-CCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHH
Confidence 743 699999999999999999999999999999999998888888875555544
No 39
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=2.2e-10 Score=97.87 Aligned_cols=158 Identities=16% Similarity=0.269 Sum_probs=120.1
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC---------CcHHHHHH
Q 022271 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF---------PHNENIKA 82 (300)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~---------~~~~~~~~ 82 (300)
|+=..||..-..-+.||.|.-.+|..|+...+ . +.|+.+|+..+.|+ ++++..+ |+.+.++.
T Consensus 23 al~~~pl~~~~iv~~mA~Aa~~gGAvgiR~~g-v-------~dIkai~~~v~vPI-IGIiKrd~~~s~v~ITptlkeVd~ 93 (229)
T COG3010 23 ALPGEPLDSPEIVAAMALAAEQGGAVGIRIEG-V-------EDIKAIRAVVDVPI-IGIIKRDYPDSPVRITPTLKEVDA 93 (229)
T ss_pred cCCCCCCcchhHHHHHHHHHHhCCcceEeecc-h-------hhHHHHHhhCCCCe-EEEEecCCCCCCceecccHHHHHH
Confidence 33445675222346899998999999987652 1 46788898899997 6666532 34788999
Q ss_pred HHHcCCcEEEEcCC---CC---cHHHHHHHHHCCCeEeec---------------------------------cChhchH
Q 022271 83 ILSEKVAVLQVSWG---EY---SEELVLEAHSAGVKVVPQ---------------------------------DGLISLL 123 (300)
Q Consensus 83 ~~e~g~~~i~~~~G---~~---~~~~v~~~~~~G~~v~~~---------------------------------~~~~~ll 123 (300)
+.+.|+++|.+.+- +| -.+++.+.|..|...+.+ .+.+.|+
T Consensus 94 L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lv 173 (229)
T COG3010 94 LAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLV 173 (229)
T ss_pred HHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHH
Confidence 99999999988641 12 246677767777777765 3467788
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
.++.++ +++|||.|.+.+++.+++++.+||++|.+|++....+| +...|-+++.+
T Consensus 174 k~l~~~----~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~--It~~F~~~ik~ 228 (229)
T COG3010 174 KQLSDA----GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEE--ITQWFVDAIKS 228 (229)
T ss_pred HHHHhC----CCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHH--HHHHHHHHHhc
Confidence 888874 79999999999999999999999999999999988876 56666666543
No 40
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.24 E-value=2.9e-10 Score=100.91 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=101.6
Q ss_pred CCCCCCcHHHHHHHHhCCceEEecCCC-------------------C-CC----HHHHHHHHHHHHhhcCCcEEeeeecC
Q 022271 18 LGPDISGPELVAAVANAGGLGLLRAPD-------------------W-EA----PDYLRDLIRKTRSLTERPFGVGVVLA 73 (300)
Q Consensus 18 M~~g~s~~~la~avs~aGglG~i~~~~-------------------~-~~----~~~l~~~i~~~r~~~~~P~gvnl~~~ 73 (300)
|+ |+++++++.+....=|+-+|+..+ + .+ .+.+.+++.+++ .+.|+.+|+-..
T Consensus 1 ma-g~~d~~~~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~--~~~~vivnv~~~ 77 (231)
T TIGR00736 1 MA-GITDAEFCRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAE--SRALVSVNVRFV 77 (231)
T ss_pred CC-CcchHHHHHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHh--hcCCEEEEEecC
Confidence 88 899999999876545566676432 1 11 245667777775 345899999876
Q ss_pred CCc--HHHHHHHHHcCCcEEEEcCCCCcH-------------------HHHHHHHHCCCeEeec----------------
Q 022271 74 FPH--NENIKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHSAGVKVVPQ---------------- 116 (300)
Q Consensus 74 ~~~--~~~~~~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~~G~~v~~~---------------- 116 (300)
.+. .+.++.+ +.++++|.+++|||-+ ++++.+++.++.|...
T Consensus 78 ~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~ 156 (231)
T TIGR00736 78 DLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALN 156 (231)
T ss_pred CHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHH
Confidence 543 2333443 4579999998888642 2334444445554432
Q ss_pred ---------------c----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 ---------------D----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 ---------------~----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
. ..+..+.++++.++ ++|||+.|||.|.+|+.+++..|||+||+|+..+.
T Consensus 157 l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~--~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 157 LVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFN--DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred HHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcC--CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 1 13677888888762 49999999999999999999999999999998764
No 41
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=99.22 E-value=4.3e-11 Score=107.68 Aligned_cols=121 Identities=29% Similarity=0.363 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc--CCCCcHHHHHHHHHCCCeEeeccChhchH
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WGEYSEELVLEAHSAGVKVVPQDGLISLL 123 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~--~G~~~~~~v~~~~~~G~~v~~~~~~~~ll 123 (300)
.+|.--.+.|+.+|+.|+.|+-++-+. ..+.+..++|+|++.|.++ .|+.-+ .+ ..++..|
T Consensus 206 id~Sl~W~Di~wLr~~T~LPIvvKGil---t~eDA~~Ave~G~~GIIVSNHGgRQlD-~v-------------pAtI~~L 268 (363)
T KOG0538|consen 206 IDPSLSWKDIKWLRSITKLPIVVKGVL---TGEDARKAVEAGVAGIIVSNHGGRQLD-YV-------------PATIEAL 268 (363)
T ss_pred CCCCCChhhhHHHHhcCcCCeEEEeec---ccHHHHHHHHhCCceEEEeCCCccccC-cc-------------cchHHHH
Confidence 455556778999999999999988776 3567888999999988765 333211 11 4588999
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
|+|++++.+ ++||+..||+++|.|+.+||+|||.+|.+|+++++.--|......++.|-=
T Consensus 269 ~Evv~aV~~-ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~i 328 (363)
T KOG0538|consen 269 PEVVKAVEG-RIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDI 328 (363)
T ss_pred HHHHHHhcC-ceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHH
Confidence 999999965 799999999999999999999999999999999999999999988887654
No 42
>PLN02979 glycolate oxidase
Probab=99.22 E-value=7.6e-11 Score=110.24 Aligned_cols=115 Identities=25% Similarity=0.273 Sum_probs=93.6
Q ss_pred HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC--CCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW--GEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 52 ~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~--G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.|+++|+.|+.|+.|+-+. ..+.++.+.+.|++.|.++. |... + ...+++..+|+++++
T Consensus 212 W~dl~wlr~~~~~PvivKgV~---~~~dA~~a~~~Gvd~I~VsnhGGrql--------d------~~p~t~~~L~ei~~~ 274 (366)
T PLN02979 212 WKDVQWLQTITKLPILVKGVL---TGEDARIAIQAGAAGIIVSNHGARQL--------D------YVPATISALEEVVKA 274 (366)
T ss_pred HHHHHHHHhccCCCEEeecCC---CHHHHHHHHhcCCCEEEECCCCcCCC--------C------CchhHHHHHHHHHHH
Confidence 367888999999999988775 46788899999999998863 2210 0 114578999999998
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
+.. ++|||++|||.+|.|++++|++||++|.+|++|+...+...++...+.|-.
T Consensus 275 ~~~-~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~ 328 (366)
T PLN02979 275 TQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQM 328 (366)
T ss_pred hCC-CCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHH
Confidence 743 699999999999999999999999999999999998888888876555554
No 43
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.21 E-value=1.9e-10 Score=107.06 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=104.6
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHH-H-H-hhcCCcEEeeeecCCCc--HHHHHHHHHc
Q 022271 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRK-T-R-SLTERPFGVGVVLAFPH--NENIKAILSE 86 (300)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~-~-r-~~~~~P~gvnl~~~~~~--~~~~~~~~e~ 86 (300)
|++.|||+ |+|+..+...+.+-|..++.-+. |.+.+.+...-.+ . + .-.+.|++++|....+. .+.++.+.+.
T Consensus 2 ~~~lAPM~-g~Td~~fR~l~~~~g~~~~~~TE-Mv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~ 79 (318)
T TIGR00742 2 RFSVAPML-DWTDRHFRYFLRLLSKHTLLYTE-MITAKAIIHGDKKDILKFSPEESPVALQLGGSDPNDLAKCAKIAEKR 79 (318)
T ss_pred CEEEECCC-CCcCHHHHHHHHHhCCCCEEEeC-CEEEhhhhccCHHHHcccCCCCCcEEEEEccCCHHHHHHHHHHHHhC
Confidence 78999998 89999999998888876666553 4444433322111 1 1 11368999999998764 4556677778
Q ss_pred CCcEEEEcCCCCcH-------------------HHHHHHHH-CCCeEeec------------------------------
Q 022271 87 KVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQ------------------------------ 116 (300)
Q Consensus 87 g~~~i~~~~G~~~~-------------------~~v~~~~~-~G~~v~~~------------------------------ 116 (300)
+++.|.+++|||.. +++..+++ .++.|...
T Consensus 80 g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~it 159 (318)
T TIGR00742 80 GYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFI 159 (318)
T ss_pred CCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEE
Confidence 99999999988632 22222222 12222211
Q ss_pred ----c-------C---------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 ----D-------G---------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 ----~-------~---------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
. + .+..+.++++.+ .++|||+.|||.|.+|+.+++. ||||||+|+.++..+
T Consensus 160 vHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~--~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP 230 (318)
T TIGR00742 160 VHARKAWLSGLSPKENREIPPLRYERVYQLKKDF--PHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENP 230 (318)
T ss_pred EeCCchhhcCCCccccccCCchhHHHHHHHHHhC--CCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCC
Confidence 0 0 123344555544 2699999999999999999996 999999999999864
No 44
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.20 E-value=8.1e-10 Score=101.89 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=104.6
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCC----------------------------CCHHHHHHHHHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW----------------------------EAPDYLRDLIRKTR 59 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~----------------------------~~~~~l~~~i~~~r 59 (300)
.++.||+.|. + ..++.+........|++|++-.... ..++...+.+++.+
T Consensus 8 ~~~nP~~~aa-g-~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~ 85 (296)
T cd04740 8 RLKNPVILAS-G-TFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWL 85 (296)
T ss_pred EcCCCCEECC-C-CCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHh
Confidence 3678999873 1 1235556666688888888733210 01244555555555
Q ss_pred hhcCCcEEeeeecCCC--cHHHHHHHHHcCCcEEEEcCCCCc---------------HHHHHHHHHC-CCeEeec-----
Q 022271 60 SLTERPFGVGVVLAFP--HNENIKAILSEKVAVLQVSWGEYS---------------EELVLEAHSA-GVKVVPQ----- 116 (300)
Q Consensus 60 ~~~~~P~gvnl~~~~~--~~~~~~~~~e~g~~~i~~~~G~~~---------------~~~v~~~~~~-G~~v~~~----- 116 (300)
+..+.|+++|+....+ +.+.++.+.+.|++.|.+++++|. .++++.+++. ++.++..
T Consensus 86 ~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~ 165 (296)
T cd04740 86 REFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNV 165 (296)
T ss_pred hcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCc
Confidence 5567899999987653 245667777889999988776541 1334444433 3333321
Q ss_pred --------------------c---------------------C----------hhchHHHHHHhhCCCCCcEEEccCCCC
Q 022271 117 --------------------D---------------------G----------LISLLPMVVDLIGDRDIPIIAAGGIVD 145 (300)
Q Consensus 117 --------------------~---------------------~----------~~~ll~~v~~~~~~~~iPViaaGGI~~ 145 (300)
. + .+.++.++++.+ ++|||+.|||.|
T Consensus 166 ~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~---~ipii~~GGI~~ 242 (296)
T cd04740 166 TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV---EIPIIGVGGIAS 242 (296)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc---CCCEEEECCCCC
Confidence 0 0 124555666665 799999999999
Q ss_pred hHHHHHHHHCCCcEEEeccccccC
Q 022271 146 ARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 146 g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++++.+++.+|||+|++||.++.-
T Consensus 243 ~~da~~~l~~GAd~V~igra~l~~ 266 (296)
T cd04740 243 GEDALEFLMAGASAVQVGTANFVD 266 (296)
T ss_pred HHHHHHHHHcCCCEEEEchhhhcC
Confidence 999999999999999999999994
No 45
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.20 E-value=9.2e-11 Score=110.33 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC-----CCcHHHHHHHHHCCCeEeeccC
Q 022271 45 WEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-----EYSEELVLEAHSAGVKVVPQDG 118 (300)
Q Consensus 45 ~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G-----~~~~~~v~~~~~~G~~v~~~~~ 118 (300)
..+++.|.+.|.++|+++ ++|++|++......+.....+.+.++|+|.++.+ .-|....+ ..| .+
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d---~~G------lP 254 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMD---HVG------LP 254 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHH---HC---------
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHh---hCC------Cc
Confidence 358899999999999998 8999999987665555555588999999999742 11223333 344 45
Q ss_pred hhchHHHHHHhhCC----CCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccC
Q 022271 119 LISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 173 (300)
Q Consensus 119 ~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~ 173 (300)
+...++++.+.+.. .++.++++|||.++.|++++++||||+|.+||.+|.+-.|.
T Consensus 255 ~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~ 313 (368)
T PF01645_consen 255 TEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCI 313 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchH
Confidence 66677777776532 36999999999999999999999999999999999998875
No 46
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.20 E-value=2.6e-10 Score=106.94 Aligned_cols=159 Identities=14% Similarity=0.028 Sum_probs=106.6
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHH-H-HHHH-hhcCCcEEeeeecCCCc--HHHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDL-I-RKTR-SLTERPFGVGVVLAFPH--NENIKA 82 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~-i-~~~r-~~~~~P~gvnl~~~~~~--~~~~~~ 82 (300)
--+.|++.|||+ |+|+..+..-+.+.|+-+++.+. |.+.+.+... . +.++ .-.+.|+.+++....+. .+.++.
T Consensus 8 ~~~~~~~lAPM~-g~td~~fR~~~~~~g~~~~~~te-mv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~ 85 (333)
T PRK11815 8 LPSRRFSVAPMM-DWTDRHCRYFHRLLSRHALLYTE-MVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADLAEAAKL 85 (333)
T ss_pred CCCCCEEEeCCC-CCcCHHHHHHHHHhCCCCEEEEC-CEEeccccccCHHHHhccCCCCCcEEEEEeCCCHHHHHHHHHH
Confidence 346799999998 89999999988888875554442 3333322211 1 1111 11367999999998764 455677
Q ss_pred HHHcCCcEEEEcCCCCcH-------------------HHHHHHHHC-CCeEeec--------------------------
Q 022271 83 ILSEKVAVLQVSWGEYSE-------------------ELVLEAHSA-GVKVVPQ-------------------------- 116 (300)
Q Consensus 83 ~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~~-G~~v~~~-------------------------- 116 (300)
+.+.|++.|.+++|||.. ++++.++++ +..+...
T Consensus 86 ~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~ 165 (333)
T PRK11815 86 AEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGC 165 (333)
T ss_pred HHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCC
Confidence 777899999999888622 333433331 2222210
Q ss_pred --------c----------------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 117 --------D----------------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 --------~----------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
. ..+..+.++++.+ .++|||+.|||.|.+|+.+++. |||+|++|+.++.-+.
T Consensus 166 d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~--~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~ 241 (333)
T PRK11815 166 DTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF--PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPY 241 (333)
T ss_pred CEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC--CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCH
Confidence 0 0133455555543 2799999999999999999997 7999999999998753
No 47
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.18 E-value=6.8e-11 Score=109.78 Aligned_cols=151 Identities=17% Similarity=0.225 Sum_probs=91.0
Q ss_pred ecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-----cCCcEEeeeecCCCc--HHHHHHHHHc
Q 022271 14 VQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-----TERPFGVGVVLAFPH--NENIKAILSE 86 (300)
Q Consensus 14 i~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-----~~~P~gvnl~~~~~~--~~~~~~~~e~ 86 (300)
|.|||. |+|+..|...+.+.|+-+...+. +.+.+.+-..-++.... .+.|+.++|..+.+. .+.++.+.+.
T Consensus 1 ~LAPM~-g~td~~fR~l~~~~g~~~~~~te-mi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~ 78 (309)
T PF01207_consen 1 ILAPMA-GVTDLPFRRLCREFGADDLTYTE-MISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAEL 78 (309)
T ss_dssp -E---T-TTSSHHHHHHHHCCTSSSBEE-S--EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCT
T ss_pred CccCCC-CCchHHHHHHHHHHCCCeEEEcC-CEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhcc
Confidence 468998 89999999999999988666553 55555443332222221 246999999998764 3455666667
Q ss_pred CCcEEEEcCCCCcHHHH-------------------HHHHH-CCCeEeec------------------------------
Q 022271 87 KVAVLQVSWGEYSEELV-------------------LEAHS-AGVKVVPQ------------------------------ 116 (300)
Q Consensus 87 g~~~i~~~~G~~~~~~v-------------------~~~~~-~G~~v~~~------------------------------ 116 (300)
+++.|.+++|||.+.++ ..+++ .++.|-..
T Consensus 79 ~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH 158 (309)
T PF01207_consen 79 GFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVH 158 (309)
T ss_dssp T-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEE
T ss_pred CCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEe
Confidence 99999999999743222 22222 23333211
Q ss_pred ----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccC
Q 022271 117 ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVAS 169 (300)
Q Consensus 117 ----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t 169 (300)
...+..+.++++.+ ++|||+.|||.+.+|+.+.+.. |+||||+|+..+..
T Consensus 159 ~Rt~~q~~~~~a~w~~i~~i~~~~---~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~n 219 (309)
T PF01207_consen 159 GRTRKQRYKGPADWEAIAEIKEAL---PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGN 219 (309)
T ss_dssp CS-TTCCCTS---HHHHHHCHHC----TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-
T ss_pred cCchhhcCCcccchHHHHHHhhcc---cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhc
Confidence 12456777888877 7999999999999999999986 99999999887765
No 48
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.18 E-value=2.7e-10 Score=111.86 Aligned_cols=58 Identities=33% Similarity=0.336 Sum_probs=50.1
Q ss_pred hhchHHHHHHhhC------CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCH
Q 022271 119 LISLLPMVVDLIG------DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 176 (300)
Q Consensus 119 ~~~ll~~v~~~~~------~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~ 176 (300)
.++.+++++++.+ +.++|||+.|||.++.|+++||++|||+|++|+.|..|.||+..-
T Consensus 331 ~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~ 394 (502)
T PRK07107 331 QATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNK 394 (502)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcE
Confidence 5667888887652 124999999999999999999999999999999999999998763
No 49
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=3.1e-10 Score=105.80 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=114.7
Q ss_pred ccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHH----HHHHHh-hcCCcEEeeeecCCCc--HH
Q 022271 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDL----IRKTRS-LTERPFGVGVVLAFPH--NE 78 (300)
Q Consensus 6 ~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~----i~~~r~-~~~~P~gvnl~~~~~~--~~ 78 (300)
....+.+++.|||+ |+|+..+..-+..-|+.+.+.+. +.+...+..- +..... ..+.|+.|++....|. .+
T Consensus 6 ~~~~~~~~~lAPM~-gvtd~~fR~l~~~~ga~~~~~TE-mv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~e 83 (323)
T COG0042 6 LIELRNRVILAPMA-GVTDLPFRRLARELGAYDLLYTE-MVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAE 83 (323)
T ss_pred cccccCcEEEecCC-CCccHHHHHHHHHhCCCceEEEc-cEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHH
Confidence 34468899999998 89999999988776764555543 4333322211 111111 1257999999998874 56
Q ss_pred HHHHHHHcCCcEEEEcCCCCcH-------------------HHHHHHHHCC--CeEeec---------------------
Q 022271 79 NIKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHSAG--VKVVPQ--------------------- 116 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~~G--~~v~~~--------------------- 116 (300)
..+.+.+.++++|.+++|||.+ ++++.++++. +.|-..
T Consensus 84 aA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~ 163 (323)
T COG0042 84 AAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILED 163 (323)
T ss_pred HHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHh
Confidence 6778888999999999999743 3334444433 444321
Q ss_pred -------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccCcc
Q 022271 117 -------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 -------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t~E 171 (300)
...+..+.++++.++ ++|||+.|+|.|.+++.++|. -|+|||++|...+.-+.
T Consensus 164 ~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~--~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~ 236 (323)
T COG0042 164 AGADALTVHGRTRAQGYLGPADWDYIKELKEAVP--SIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPW 236 (323)
T ss_pred cCCCEEEEecccHHhcCCCccCHHHHHHHHHhCC--CCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCc
Confidence 125667888888883 399999999999999999999 58999999987766543
No 50
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.17 E-value=1.4e-10 Score=109.99 Aligned_cols=115 Identities=17% Similarity=0.264 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhC
Q 022271 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIG 131 (300)
Q Consensus 52 ~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~ 131 (300)
.+.|+++|+.++.|+.++=+ ...+.++.+.+.|++.|+++. .--+. .+. ..+++..||++++++.
T Consensus 242 W~~i~~lr~~~~~pvivKgV---~~~~dA~~a~~~G~d~I~vsn-hGGr~-----~d~------~~~t~~~L~ei~~~~~ 306 (383)
T cd03332 242 WEDLAFLREWTDLPIVLKGI---LHPDDARRAVEAGVDGVVVSN-HGGRQ-----VDG------SIAALDALPEIVEAVG 306 (383)
T ss_pred HHHHHHHHHhcCCCEEEecC---CCHHHHHHHHHCCCCEEEEcC-CCCcC-----CCC------CcCHHHHHHHHHHHhc
Confidence 46788899999999988844 346788899999999998863 11110 011 2578999999999885
Q ss_pred CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 132 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 132 ~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+ ++|||++|||.+|.|++++|++||++|.+|++|+..-.....+...+.|
T Consensus 307 ~-~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l 356 (383)
T cd03332 307 D-RLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVL 356 (383)
T ss_pred C-CCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHH
Confidence 3 6999999999999999999999999999999999654333333333333
No 51
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.17 E-value=1.9e-10 Score=108.09 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=85.9
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc--CCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhh
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLI 130 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~--~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~ 130 (300)
+.|+++|+.++.|+.++-+. ..+.++.+.+.|++.|+++ .|.. ++ + ..+++..++++++++
T Consensus 211 ~~l~~lr~~~~~PvivKgv~---~~~dA~~a~~~G~d~I~vsnhGGr~----ld-----~-----~~~~~~~l~~i~~a~ 273 (351)
T cd04737 211 ADIEFIAKISGLPVIVKGIQ---SPEDADVAINAGADGIWVSNHGGRQ----LD-----G-----GPASFDSLPEIAEAV 273 (351)
T ss_pred HHHHHHHHHhCCcEEEecCC---CHHHHHHHHHcCCCEEEEeCCCCcc----CC-----C-----CchHHHHHHHHHHHh
Confidence 55778888889999998542 4577889999999999884 2321 10 1 135678899999887
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHH
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
.. ++|||++|||.++.|+.++|++||++|++|++|+..--....+...+.+.
T Consensus 274 ~~-~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~~l~ 325 (351)
T cd04737 274 NH-RVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASVLE 325 (351)
T ss_pred CC-CCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHHHHH
Confidence 42 69999999999999999999999999999999998754444444444433
No 52
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.16 E-value=1.7e-10 Score=109.27 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=91.9
Q ss_pred HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe-eccChhchHHHHHHhh
Q 022271 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV-PQDGLISLLPMVVDLI 130 (300)
Q Consensus 52 ~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~-~~~~~~~ll~~v~~~~ 130 (300)
.+.|+++|+.++.|+.++=+. ..+.++.+.+.|++.|.++. . |+... ...+++..++++++++
T Consensus 234 W~di~~lr~~~~~pvivKgV~---s~~dA~~a~~~Gvd~I~Vs~-h------------GGr~~d~~~~t~~~L~~i~~a~ 297 (381)
T PRK11197 234 WKDLEWIRDFWDGPMVIKGIL---DPEDARDAVRFGADGIVVSN-H------------GGRQLDGVLSSARALPAIADAV 297 (381)
T ss_pred HHHHHHHHHhCCCCEEEEecC---CHHHHHHHHhCCCCEEEECC-C------------CCCCCCCcccHHHHHHHHHHHh
Confidence 356999999999999887763 57789999999999998763 1 11110 0146789999999887
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
.. ++|||++|||.+|.|+.++|++||++|++|++|+..-.+...+...+.|-.
T Consensus 298 ~~-~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~ 350 (381)
T PRK11197 298 KG-DITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDL 350 (381)
T ss_pred cC-CCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHH
Confidence 42 699999999999999999999999999999999998766666666665554
No 53
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.14 E-value=1.8e-09 Score=99.72 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=103.5
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC--------------------------C--CCHHHHHHHHHHHHh
Q 022271 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------------------------W--EAPDYLRDLIRKTRS 60 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------------------------~--~~~~~l~~~i~~~r~ 60 (300)
++.||+.||+..+. +.+....+.++| +|++-... + ...+...+.++..+.
T Consensus 10 l~npi~~aag~~~~-~~~~~~~~~~~G-~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~ 87 (300)
T TIGR01037 10 FKNPLILASGIMGS-GVESLRRIDRSG-AGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVRE 87 (300)
T ss_pred CCCCCEeCCcCCCC-CHHHHHHHHHcC-CcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhc
Confidence 67899999953355 445555566764 67664310 0 123333334444333
Q ss_pred hcCCcEEeeeecCCCc--HHHHHHHHHc--CCcEEEEcCCCCc---------------HHHHHHHHHC-CCeEeec----
Q 022271 61 LTERPFGVGVVLAFPH--NENIKAILSE--KVAVLQVSWGEYS---------------EELVLEAHSA-GVKVVPQ---- 116 (300)
Q Consensus 61 ~~~~P~gvnl~~~~~~--~~~~~~~~e~--g~~~i~~~~G~~~---------------~~~v~~~~~~-G~~v~~~---- 116 (300)
..+.|+.+|+....+. .+.++.+.+. +++.|.+++|||. .++++.+++. +..+...
T Consensus 88 ~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~ 167 (300)
T TIGR01037 88 EFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPN 167 (300)
T ss_pred cCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 3457999999876542 3345555554 3899998887752 2334444332 3333221
Q ss_pred ---------------------c----C---------------------------hhchHHHHHHhhCCCCCcEEEccCCC
Q 022271 117 ---------------------D----G---------------------------LISLLPMVVDLIGDRDIPIIAAGGIV 144 (300)
Q Consensus 117 ---------------------~----~---------------------------~~~ll~~v~~~~~~~~iPViaaGGI~ 144 (300)
. + .+..+.++++.+ ++|||+.|||.
T Consensus 168 ~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~---~ipvi~~GGI~ 244 (300)
T TIGR01037 168 VTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV---DIPIIGVGGIT 244 (300)
T ss_pred hhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC---CCCEEEECCCC
Confidence 0 0 013455566655 79999999999
Q ss_pred ChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHH
Q 022271 145 DARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 145 ~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
+++++.+++..|||+|++||.++.-.+ .-..+++.+.
T Consensus 245 s~~da~~~l~~GAd~V~igr~~l~~p~--~~~~i~~~l~ 281 (300)
T TIGR01037 245 SFEDALEFLMAGASAVQVGTAVYYRGF--AFKKIIEGLI 281 (300)
T ss_pred CHHHHHHHHHcCCCceeecHHHhcCch--HHHHHHHHHH
Confidence 999999999999999999999998752 3333444443
No 54
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.13 E-value=2.1e-10 Score=108.28 Aligned_cols=170 Identities=23% Similarity=0.263 Sum_probs=113.3
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| +.+||+.+||+ +.. ...++.+..++|..-.++.....+.| ++.+. ...|...++..+..
T Consensus 50 t~~lG~~~s~P~~iaP~~-~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~e----~ia~~---~~~~~~~Qly~~~d 121 (356)
T PF01070_consen 50 TTFLGQKLSMPFFIAPMG-GGGLAHPDGERALARAAAKAGIPMMLSSQSSASLE----EIAAA---SGGPLWFQLYPPRD 121 (356)
T ss_dssp EEETTEEESSSEEEEEES-TGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCHH----HHHHH---CTSEEEEEEEGBSS
T ss_pred eeeCCccCCCCeEEcchh-hhhhhccchHHHHHHHHhccCcceeccCCccCCHH----HHHhh---ccCCeEEEEEEecC
Confidence 45677 57899999998 333 24899999999988888765333443 33322 23788899987654
Q ss_pred c---HHHHHHHHHcCCcEEEEcCCC----------------Cc-------------------------------------
Q 022271 76 H---NENIKAILSEKVAVLQVSWGE----------------YS------------------------------------- 99 (300)
Q Consensus 76 ~---~~~~~~~~e~g~~~i~~~~G~----------------~~------------------------------------- 99 (300)
. .+.++.+.+.|++.+.++... |+
T Consensus 122 ~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 201 (356)
T PF01070_consen 122 RELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAA 201 (356)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchhHH
Confidence 2 456777888899888663211 00
Q ss_pred ------------HHHHHHHH-HCCCeEeec--------------------------------cChhchHHHHHHhhCCCC
Q 022271 100 ------------EELVLEAH-SAGVKVVPQ--------------------------------DGLISLLPMVVDLIGDRD 134 (300)
Q Consensus 100 ------------~~~v~~~~-~~G~~v~~~--------------------------------~~~~~ll~~v~~~~~~~~ 134 (300)
.+.++.++ ...++++.. .+++..|++++++++ .+
T Consensus 202 ~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~-~~ 280 (356)
T PF01070_consen 202 RFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVG-DD 280 (356)
T ss_dssp HHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHT-TS
T ss_pred HHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhc-CC
Confidence 01122221 233443322 357889999999884 37
Q ss_pred CcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 135 iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+|||+.|||.+|.|++++|+|||++|.+|..|+..-.....+...+.|
T Consensus 281 ~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~ 328 (356)
T PF01070_consen 281 IPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGGEEGVERVL 328 (356)
T ss_dssp SEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999976444444444443
No 55
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.09 E-value=2.3e-09 Score=98.48 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=108.3
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCC---------C--------------------------C--CCHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP---------D--------------------------W--EAPDY 50 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~---------~--------------------------~--~~~~~ 50 (300)
.++.||+.|... ...+.++.....++| +|.+-.. + + ..++.
T Consensus 7 ~~~nPv~~aag~-~~~~~~~~~~~~~~g-~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~ 84 (289)
T cd02810 7 KLKNPFGVAAGP-LLKTGELIARAAAAG-FGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDV 84 (289)
T ss_pred ECCCCCEeCCCC-CCCCHHHHHHHHHcC-CCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHH
Confidence 367899998865 446788888877776 4443110 0 0 12456
Q ss_pred HHHHHHHHHhh-cCCcEEeeeecCCCc--HHHHHHHHHcCCcEEEEcCCCCc--------------HHHHHHHHHC-CCe
Q 022271 51 LRDLIRKTRSL-TERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYS--------------EELVLEAHSA-GVK 112 (300)
Q Consensus 51 l~~~i~~~r~~-~~~P~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~G~~~--------------~~~v~~~~~~-G~~ 112 (300)
+.+++.+.++. .+.|+.+|+....+. .+.++.+.+.|+++|.+++++|. .++++.+++. +..
T Consensus 85 ~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~p 164 (289)
T cd02810 85 WLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIP 164 (289)
T ss_pred HHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCC
Confidence 66777777665 689999999876432 45677888889999999887751 1344444443 323
Q ss_pred Eeec---------------------------cC-------------------------------hhchHHHHHHhhCCCC
Q 022271 113 VVPQ---------------------------DG-------------------------------LISLLPMVVDLIGDRD 134 (300)
Q Consensus 113 v~~~---------------------------~~-------------------------------~~~ll~~v~~~~~~~~ 134 (300)
++.. .+ .+.++.++++.+. .+
T Consensus 165 v~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~-~~ 243 (289)
T cd02810 165 LLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ-LD 243 (289)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC-CC
Confidence 2211 00 1223445555442 16
Q ss_pred CcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 135 iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+|||+.|||.|++++.+++.+|||+|++||+++..
T Consensus 244 ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~ 278 (289)
T cd02810 244 IPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWD 278 (289)
T ss_pred CCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhc
Confidence 99999999999999999999999999999999975
No 56
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.08 E-value=1.3e-09 Score=100.74 Aligned_cols=123 Identities=16% Similarity=0.107 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcCCCCcHHHHHH--------HH---HCCCeE
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYSEELVLE--------AH---SAGVKV 113 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~G~~~~~~v~~--------~~---~~G~~v 113 (300)
.+++.+.+.++.+|+.++.|+.|++...... .+.++.+.+.|++.|+++--.+....++. .| ..|...
T Consensus 151 ~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~s 230 (299)
T cd02940 151 QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYS 230 (299)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCccc
Confidence 4789999999999998899999998764432 46778889999999876421111001110 11 011111
Q ss_pred eec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 114 VPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 114 ~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
... .-.+..+.++++.+.. ++|||+.|||.+++|+.+++.+|||+||+||.++.-
T Consensus 231 G~a~~p~~l~~v~~~~~~~~~-~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~ 287 (299)
T cd02940 231 GPAVKPIALRAVSQIARAPEP-GLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQ 287 (299)
T ss_pred CCCcchHHHHHHHHHHHhcCC-CCcEEEECCCCCHHHHHHHHHcCCChheEceeeccc
Confidence 110 1136788888888732 699999999999999999999999999999999874
No 57
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.05 E-value=3.3e-09 Score=94.01 Aligned_cols=154 Identities=20% Similarity=0.252 Sum_probs=98.7
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHH-----HhhcCCcEEeeeecCCCc--HHHHHHHH
Q 022271 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKT-----RSLTERPFGVGVVLAFPH--NENIKAIL 84 (300)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~-----r~~~~~P~gvnl~~~~~~--~~~~~~~~ 84 (300)
|+++|||. ++|+..|...+.+.| ..++-+. +...+.+...-++. +...+.|+.+++....+. .+..+.+.
T Consensus 1 ~~~~aPm~-~~~~~~fR~l~~~~~-~~~~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~ 77 (231)
T cd02801 1 KLILAPMV-GVTDLPFRLLCRRYG-ADLVYTE-MISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVE 77 (231)
T ss_pred CeEeCCCC-CCcCHHHHHHHHHHC-CCEEEec-CEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 58899997 899999999988888 4444432 32222221111111 112357888888765442 44556666
Q ss_pred HcCCcEEEEcCCCCc-------------------HHHHHHHHH-----------------------------CCCeEeec
Q 022271 85 SEKVAVLQVSWGEYS-------------------EELVLEAHS-----------------------------AGVKVVPQ 116 (300)
Q Consensus 85 e~g~~~i~~~~G~~~-------------------~~~v~~~~~-----------------------------~G~~v~~~ 116 (300)
+.|.+.|.+++|+|. .++++.+++ .|+..+..
T Consensus 78 ~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v 157 (231)
T cd02801 78 ELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTV 157 (231)
T ss_pred hcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEE
Confidence 678888877766631 133333332 23222210
Q ss_pred -----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccCcc
Q 022271 117 -----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASEE 171 (300)
Q Consensus 117 -----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t~E 171 (300)
...+..+.++++.+ ++||+++|||.+.+++.+++.. |||+|++|+.++.-++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~---~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~ 221 (231)
T cd02801 158 HGRTREQRYSGPADWDYIAEIKEAV---SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPW 221 (231)
T ss_pred CCCCHHHcCCCCCCHHHHHHHHhCC---CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCH
Confidence 01234445555554 7999999999999999999998 8999999999998754
No 58
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.03 E-value=8.3e-09 Score=96.89 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhhcCCcEEeeeecCCCc--HHHHHHHHHcCCcEEEEcCCCCcH--------------HHHHHHHH-CC
Q 022271 48 PDYLRDLIRKTRSLTERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYSE--------------ELVLEAHS-AG 110 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~~~P~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~G~~~~--------------~~v~~~~~-~G 110 (300)
++...+.++++++..+.|+.+|+....+. .+.++.+.+.+++.|.+++++|+. ++++.+++ ..
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~ 165 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS 165 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC
Confidence 45566667667666678999999875543 356667777889999887665321 22333332 23
Q ss_pred CeEeec-------------------------cC----------------------------hhchHHHHHHhhCCCCCcE
Q 022271 111 VKVVPQ-------------------------DG----------------------------LISLLPMVVDLIGDRDIPI 137 (300)
Q Consensus 111 ~~v~~~-------------------------~~----------------------------~~~ll~~v~~~~~~~~iPV 137 (300)
+.++.. .. .+..+.++++.+ ++||
T Consensus 166 iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~---~ipI 242 (334)
T PRK07565 166 IPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV---GADL 242 (334)
T ss_pred CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc---CCCE
Confidence 333321 00 012233344444 7999
Q ss_pred EEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 138 IAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 138 iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|+.|||.|++|+.++|.+|||+||+||.++.-
T Consensus 243 ig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~ 274 (334)
T PRK07565 243 AATTGVHDAEDVIKMLLAGADVVMIASALLRH 274 (334)
T ss_pred EEECCCCCHHHHHHHHHcCCCceeeehHHhhh
Confidence 99999999999999999999999999999983
No 59
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.99 E-value=3e-09 Score=100.07 Aligned_cols=113 Identities=20% Similarity=0.161 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-CCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 51 l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
..+.|+++|+.++.|+-++=+ ...+.++.+.+.|++.|.++. |... .+ . ..+++..+++++++
T Consensus 224 ~w~~i~~ir~~~~~pviiKgV---~~~eda~~a~~~G~d~I~VSnhGGrq---ld----~------~~~~~~~L~ei~~~ 287 (361)
T cd04736 224 NWQDLRWLRDLWPHKLLVKGI---VTAEDAKRCIELGADGVILSNHGGRQ---LD----D------AIAPIEALAEIVAA 287 (361)
T ss_pred CHHHHHHHHHhCCCCEEEecC---CCHHHHHHHHHCCcCEEEECCCCcCC---Cc----C------CccHHHHHHHHHHH
Confidence 345799999999999877654 357789999999999998763 2111 11 0 13578899999998
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+ ++|||+.|||.+|.|+.++|++||++|++|++|+..-.....+...+.+
T Consensus 288 ~---~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l 337 (361)
T cd04736 288 T---YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVL 337 (361)
T ss_pred h---CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHH
Confidence 7 6999999999999999999999999999999999765444444444433
No 60
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=98.96 E-value=4.4e-09 Score=99.20 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=76.9
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc--CCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhC
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIG 131 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~--~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~ 131 (300)
.|+++|+.++.|+.|+-+. ..+.++.+.+.|++.|.++ .|.... .....+..|++++++++
T Consensus 219 ~i~~l~~~~~~PvivKGv~---~~eda~~a~~~Gvd~I~VS~HGGrq~~--------------~~~a~~~~L~ei~~av~ 281 (367)
T TIGR02708 219 DIEEIAGYSGLPVYVKGPQ---CPEDADRALKAGASGIWVTNHGGRQLD--------------GGPAAFDSLQEVAEAVD 281 (367)
T ss_pred HHHHHHHhcCCCEEEeCCC---CHHHHHHHHHcCcCEEEECCcCccCCC--------------CCCcHHHHHHHHHHHhC
Confidence 4555555566666555332 2455566666666655433 121100 01346788999999874
Q ss_pred CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 132 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 132 ~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
. ++|||+.|||.++.|+.++|++||++|++|..|+..--....+...+.|-.
T Consensus 282 ~-~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~ 333 (367)
T TIGR02708 282 K-RVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEY 333 (367)
T ss_pred C-CCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHH
Confidence 2 699999999999999999999999999999999997555556666665544
No 61
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=98.94 E-value=2.7e-09 Score=98.21 Aligned_cols=144 Identities=20% Similarity=0.269 Sum_probs=101.8
Q ss_pred HHHHHHHHhCCceEE----ecCCCC-------CCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEE
Q 022271 25 PELVAAVANAGGLGL----LRAPDW-------EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQ 92 (300)
Q Consensus 25 ~~la~avs~aGglG~----i~~~~~-------~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~ 92 (300)
.+++..+.+++-.+. ++|+|. .++|.+.+.++++++.+++|+.|+|.++..+ .+.++.+.++|.+.|+
T Consensus 112 ~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~ 191 (310)
T COG0167 112 ADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLI 191 (310)
T ss_pred HHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEE
Confidence 477777788773222 355541 3788999999999999999999999973322 5567888899999987
Q ss_pred EcCCCCcHHHHHH-H------HHCCCeEeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 93 VSWGEYSEELVLE-A------HSAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 93 ~~~G~~~~~~v~~-~------~~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
..--..+...++. - .+.|+..... .-.+.++.++.+.+.. ++|||+.|||.|++|+.+.+.+||+.||+|
T Consensus 192 ~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~-~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~ 270 (310)
T COG0167 192 AINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGG-DIPIIGVGGIETGEDALEFILAGASAVQVG 270 (310)
T ss_pred EEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCC-CCcEEEecCcCcHHHHHHHHHcCCchheee
Confidence 5421111111111 0 1233333321 1246778888888743 699999999999999999999999999999
Q ss_pred cccccC
Q 022271 164 TRFVAS 169 (300)
Q Consensus 164 T~fl~t 169 (300)
|+++.-
T Consensus 271 Tal~~~ 276 (310)
T COG0167 271 TALIYK 276 (310)
T ss_pred eeeeee
Confidence 999876
No 62
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=98.93 E-value=1.3e-08 Score=96.73 Aligned_cols=159 Identities=11% Similarity=0.117 Sum_probs=105.8
Q ss_pred ccceecCCCCCCCCc---HHHHHHHHhCCceEE---ecCCCC-----------CCHHHHHHHHHHHHhhcCCcEEeeeec
Q 022271 10 EYGIVQAPLGPDISG---PELVAAVANAGGLGL---LRAPDW-----------EAPDYLRDLIRKTRSLTERPFGVGVVL 72 (300)
Q Consensus 10 ~~Pii~apM~~g~s~---~~la~avs~aGglG~---i~~~~~-----------~~~~~l~~~i~~~r~~~~~P~gvnl~~ 72 (300)
+.|+|.-=|+ +.+. .+++..+.++|.=++ ++|++. .+++.+++.++.+|+.++.|+.|+|.+
T Consensus 113 ~~pvIaSi~~-~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP 191 (385)
T PLN02495 113 DRILIASIME-EYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP 191 (385)
T ss_pred CCcEEEEccC-CCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCC
Confidence 3588875544 3553 367777888774332 344432 478889999999999999999999997
Q ss_pred CCCc-HHHHHHHHHcCCcEEEEcCCCCcHHHHH--HHH---------HCCCeEeec--cChhchHHHHHHhhCC---CCC
Q 022271 73 AFPH-NENIKAILSEKVAVLQVSWGEYSEELVL--EAH---------SAGVKVVPQ--DGLISLLPMVVDLIGD---RDI 135 (300)
Q Consensus 73 ~~~~-~~~~~~~~e~g~~~i~~~~G~~~~~~v~--~~~---------~~G~~v~~~--~~~~~ll~~v~~~~~~---~~i 135 (300)
+.++ .+.++.+.+.|++.|+..--.++...++ ..+ ..|...... .-.+..+.++++.++. .++
T Consensus 192 n~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~i 271 (385)
T PLN02495 192 NITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDR 271 (385)
T ss_pred ChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCC
Confidence 6644 4567888899999987642111111121 100 112222110 0023445556665521 159
Q ss_pred cEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 136 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 136 PViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|||+.|||.+++|+.+++.+||+.||++|+++.-
T Consensus 272 pIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~ 305 (385)
T PLN02495 272 SLSGIGGVETGGDAAEFILLGADTVQVCTGVMMH 305 (385)
T ss_pred cEEEECCCCCHHHHHHHHHhCCCceeEeeeeeec
Confidence 9999999999999999999999999999999974
No 63
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.92 E-value=5e-08 Score=86.17 Aligned_cols=144 Identities=22% Similarity=0.293 Sum_probs=97.4
Q ss_pred CCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEe-eeecC-------CCcHHHHHHHHHcC
Q 022271 16 APLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGV-GVVLA-------FPHNENIKAILSEK 87 (300)
Q Consensus 16 apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gv-nl~~~-------~~~~~~~~~~~e~g 87 (300)
+||+-+..-.+++.+..++|.-+ +.. .++ +.++++|+.++.|+-. ..... .++.+.++.+.+.|
T Consensus 21 ~~~~~~~~i~~~a~~~~~~G~~~-~~~---~~~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aG 92 (219)
T cd04729 21 EPLHSPEIMAAMALAAVQGGAVG-IRA---NGV----EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAG 92 (219)
T ss_pred CCcCcHHHHHHHHHHHHHCCCeE-EEc---CCH----HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcC
Confidence 56653223357777777777654 332 244 3566677667889842 11110 12355889999999
Q ss_pred CcEEEEcCCC-------CcHHHHHHHHHCC-CeEeec-------------------c--------------ChhchHHHH
Q 022271 88 VAVLQVSWGE-------YSEELVLEAHSAG-VKVVPQ-------------------D--------------GLISLLPMV 126 (300)
Q Consensus 88 ~~~i~~~~G~-------~~~~~v~~~~~~G-~~v~~~-------------------~--------------~~~~ll~~v 126 (300)
+++|.+.... ...++++++++.| ..++.. . ..+.++.++
T Consensus 93 ad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i 172 (219)
T cd04729 93 ADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKEL 172 (219)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHH
Confidence 9988774221 2356777777777 554432 0 123566777
Q ss_pred HHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 127 VDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 127 ~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
++.+ ++||++.|||.+++++.+++.+|||+|++||.++-..
T Consensus 173 ~~~~---~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~ 213 (219)
T cd04729 173 RKAL---GIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPE 213 (219)
T ss_pred HHhc---CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChH
Confidence 7665 7999999999999999999999999999999987653
No 64
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.91 E-value=4.9e-09 Score=98.07 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=100.6
Q ss_pred ccceecCCCCCCCCcH---HHHHHHHhCCceEE---ecCCC----C---CCHHHHHHHHHHHHhhcCCcEEeeeecCCCc
Q 022271 10 EYGIVQAPLGPDISGP---ELVAAVANAGGLGL---LRAPD----W---EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH 76 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~---~la~avs~aGglG~---i~~~~----~---~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~ 76 (300)
+.||+.- +. |.+.. +++..+.++|.=++ ++|.+ . ..++.+.+.++++|+.++.|+.|++.+....
T Consensus 99 ~~pvi~s-i~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~ 176 (325)
T cd04739 99 SIPVIAS-LN-GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSA 176 (325)
T ss_pred CCeEEEE-eC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccC
Confidence 4677753 43 44433 66777777774333 22211 0 1125677889999998899999999865433
Q ss_pred -HHHHHHHHHcCCcEEEEcCCCCcHHHHH--HHH--HCCCeEeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHH
Q 022271 77 -NENIKAILSEKVAVLQVSWGEYSEELVL--EAH--SAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 149 (300)
Q Consensus 77 -~~~~~~~~e~g~~~i~~~~G~~~~~~v~--~~~--~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v 149 (300)
.+.++.+.+.|++.|+++...+ ...++ ..+ ..+...... .-.+..+.++++.+ ++|||+.|||.|++|+
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~-~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~---~ipIig~GGI~s~~Da 252 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFY-QPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV---KASLAASGGVHDAEDV 252 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcC-CCCccccccceecCCCcCCccchhHHHHHHHHHHccc---CCCEEEECCCCCHHHH
Confidence 5677888999999998863221 11111 100 011110000 11345566666665 7999999999999999
Q ss_pred HHHHHCCCcEEEeccccccC
Q 022271 150 VAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 150 ~aal~lGAdgV~~GT~fl~t 169 (300)
.++|.+|||+||+||.++.-
T Consensus 253 ~e~l~aGA~~Vqv~ta~~~~ 272 (325)
T cd04739 253 VKYLLAGADVVMTTSALLRH 272 (325)
T ss_pred HHHHHcCCCeeEEehhhhhc
Confidence 99999999999999999974
No 65
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.91 E-value=1.3e-08 Score=94.04 Aligned_cols=153 Identities=18% Similarity=0.257 Sum_probs=101.0
Q ss_pred ccceecCCCCCCCCcHHHH---HHHHhCCceEEe----cCCC--------CCCHHHHHHHHHHHHhhcCCcEEeeeecCC
Q 022271 10 EYGIVQAPLGPDISGPELV---AAVANAGGLGLL----RAPD--------WEAPDYLRDLIRKTRSLTERPFGVGVVLAF 74 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la---~avs~aGglG~i----~~~~--------~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~ 74 (300)
+.|++. -+. |.+..+++ ..+.++|+...+ +|.+ ..+++.+.+.++++|+.++.|+.|++....
T Consensus 91 ~~p~i~-si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 168 (301)
T PRK07259 91 DTPIIA-NVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV 168 (301)
T ss_pred CCcEEE-Eec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 567775 443 44544444 444566622222 2211 136889999999999988999999997543
Q ss_pred Cc-HHHHHHHHHcCCcEEEEcC---CCCcH-----HHHHHHHHCCCeEeec--cChhchHHHHHHhhCCCCCcEEEccCC
Q 022271 75 PH-NENIKAILSEKVAVLQVSW---GEYSE-----ELVLEAHSAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGI 143 (300)
Q Consensus 75 ~~-~~~~~~~~e~g~~~i~~~~---G~~~~-----~~v~~~~~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI 143 (300)
.+ .+.++.+.+.|++.|.++. |.... .... ...|...... .-.+.++.++++.+ ++|||+.|||
T Consensus 169 ~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~--~~~gg~sg~~~~p~~l~~v~~i~~~~---~ipvi~~GGI 243 (301)
T PRK07259 169 TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILA--NVTGGLSGPAIKPIALRMVYQVYQAV---DIPIIGMGGI 243 (301)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeec--CCcCccCCcCcccccHHHHHHHHHhC---CCCEEEECCC
Confidence 32 4567788899999887632 21000 0000 0112111100 12467788888877 7999999999
Q ss_pred CChHHHHHHHHCCCcEEEeccccccC
Q 022271 144 VDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 144 ~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.|++++.+++..|||+|++||.++.-
T Consensus 244 ~~~~da~~~l~aGAd~V~igr~ll~~ 269 (301)
T PRK07259 244 SSAEDAIEFIMAGASAVQVGTANFYD 269 (301)
T ss_pred CCHHHHHHHHHcCCCceeEcHHHhcC
Confidence 99999999999999999999999984
No 66
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.86 E-value=1.3e-08 Score=98.42 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=102.6
Q ss_pred ccceecCCCCCCC-Cc---HHHHHHHHhCCceEE---ecCCC-----------CCCHHHHHHHHHHHHhhcCCcEEeeee
Q 022271 10 EYGIVQAPLGPDI-SG---PELVAAVANAGGLGL---LRAPD-----------WEAPDYLRDLIRKTRSLTERPFGVGVV 71 (300)
Q Consensus 10 ~~Pii~apM~~g~-s~---~~la~avs~aGglG~---i~~~~-----------~~~~~~l~~~i~~~r~~~~~P~gvnl~ 71 (300)
+.|+|. .+. |. +. .+++..+.++|.=++ ++|++ ..+++.+.+.++.+++.++.|+.|+|.
T Consensus 99 ~~p~i~-si~-g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~ 176 (420)
T PRK08318 99 DRALIA-SIM-VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLT 176 (420)
T ss_pred CceEEE-Eec-cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcC
Confidence 367663 443 44 33 355666666663222 23332 147899999999999988999999998
Q ss_pred cCCCc-HHHHHHHHHcCCcEEEEcCCCCcHHHHHH--------HHH---CCCeEeec--cChhchHHHHHHhhCCCCCcE
Q 022271 72 LAFPH-NENIKAILSEKVAVLQVSWGEYSEELVLE--------AHS---AGVKVVPQ--DGLISLLPMVVDLIGDRDIPI 137 (300)
Q Consensus 72 ~~~~~-~~~~~~~~e~g~~~i~~~~G~~~~~~v~~--------~~~---~G~~v~~~--~~~~~ll~~v~~~~~~~~iPV 137 (300)
+.... .+.++.+.+.|++.|++.--......++. +|. .|...... .-.+..+.++++++...++||
T Consensus 177 p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipI 256 (420)
T PRK08318 177 PNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPI 256 (420)
T ss_pred CCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCE
Confidence 65443 46678888999999885311111111211 111 11111110 013567777777652126999
Q ss_pred EEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 138 IAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 138 iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|+.|||.|++|+.+++.+|||+||+||.++.
T Consensus 257 ig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 257 SGIGGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred EeecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 9999999999999999999999999999997
No 67
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.84 E-value=4.1e-08 Score=89.02 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecC------CCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLA------FPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~------~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~ 116 (300)
.+.+.+.+.++++|+..+.|+. ++.. ...+..++.+.+.|++.+.+. ..|+ .++.+.++++|+..+..
T Consensus 74 ~~~~~~~~~~~~~r~~~~~p~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviip-DLP~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 74 INLNKILSILSEVNGEIKAPIV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIP-DLPYEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCHHHHHHHHHHHhcCCCCCEE--EEecccHHHHhCHHHHHHHHHHcCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4566788888888876677863 3432 234778999999999999887 4553 35666777888776643
Q ss_pred -----------------------------cC--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 117 -----------------------------DG--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 117 -----------------------------~~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.| ...++.++++.. +.||...+||.+++++.++...||||
T Consensus 151 v~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t---~~Pi~vGFGI~~~e~~~~~~~~GADG 227 (263)
T CHL00200 151 IAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT---NKPIILGFGISTSEQIKQIKGWNING 227 (263)
T ss_pred ECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHhcCCCE
Confidence 01 223445555543 89999999999999999999999999
Q ss_pred EEeccccccCcc
Q 022271 160 ICLGTRFVASEE 171 (300)
Q Consensus 160 V~~GT~fl~t~E 171 (300)
|++||+|+-.-+
T Consensus 228 vVVGSalv~~i~ 239 (263)
T CHL00200 228 IVIGSACVQILL 239 (263)
T ss_pred EEECHHHHHHHH
Confidence 999999975443
No 68
>PLN02591 tryptophan synthase
Probab=98.81 E-value=5.7e-08 Score=87.37 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecC------CCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLA------FPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~------~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~ 116 (300)
.+.+++.+.++++|+..+.|+. ++.. ...+..++.+.+.|++.+.+. ..|. .++.+.+++.|+..+..
T Consensus 61 ~~~~~~~~~~~~~r~~~~~p~i--lm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip-DLP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 61 TTLDSVISMLKEVAPQLSCPIV--LFTYYNPILKRGIDKFMATIKEAGVHGLVVP-DLPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCHHHHHHHHHHHhcCCCCCEE--EEecccHHHHhHHHHHHHHHHHcCCCEEEeC-CCCHHHHHHHHHHHHHcCCeEEEE
Confidence 4667888889999876777863 3332 234678889999999988876 5553 35666777888776643
Q ss_pred -----------------------------cC--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 117 -----------------------------DG--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 117 -----------------------------~~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.| +..++.++++.. ++||+...||++++++.+++..||||
T Consensus 138 v~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~---~~Pv~vGFGI~~~e~v~~~~~~GADG 214 (250)
T PLN02591 138 TTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT---DKPVAVGFGISKPEHAKQIAGWGADG 214 (250)
T ss_pred eCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC---CCceEEeCCCCCHHHHHHHHhcCCCE
Confidence 00 223455555543 89999999999999999999999999
Q ss_pred EEeccccccCc
Q 022271 160 ICLGTRFVASE 170 (300)
Q Consensus 160 V~~GT~fl~t~ 170 (300)
|.+||+|+-..
T Consensus 215 vIVGSalVk~i 225 (250)
T PLN02591 215 VIVGSAMVKAL 225 (250)
T ss_pred EEECHHHHHhh
Confidence 99999997543
No 69
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=98.80 E-value=8.1e-09 Score=96.90 Aligned_cols=145 Identities=17% Similarity=0.242 Sum_probs=96.7
Q ss_pred cHHHHHHHHhCCce-EE----ecCCC------CCCHHHHHHHHHHHHhhcC-------CcEEeeeecCCC---cHHHHHH
Q 022271 24 GPELVAAVANAGGL-GL----LRAPD------WEAPDYLRDLIRKTRSLTE-------RPFGVGVVLAFP---HNENIKA 82 (300)
Q Consensus 24 ~~~la~avs~aGgl-G~----i~~~~------~~~~~~l~~~i~~~r~~~~-------~P~gvnl~~~~~---~~~~~~~ 82 (300)
..+++..+..++.. .. ++|.+ ..+++.+.+.++.+|+.++ +|+.|+|.+... ..+.++.
T Consensus 153 ~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~ 232 (335)
T TIGR01036 153 KEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADS 232 (335)
T ss_pred HHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHH
Confidence 45777666665521 11 24443 2367888888999887765 899999998765 3556788
Q ss_pred HHHcCCcEEEEcCCCCcHHHHHHHH---HCCCeEeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCC
Q 022271 83 ILSEKVAVLQVSWGEYSEELVLEAH---SAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 83 ~~e~g~~~i~~~~G~~~~~~v~~~~---~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
+.+.|++.|+..--....+.+...+ ..|+..... .-.+.++.++.+.+.. ++|||+.|||.|++|+.+++.+||
T Consensus 233 ~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~-~ipiig~GGI~~~~da~e~l~aGA 311 (335)
T TIGR01036 233 LVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQG-RLPIIGVGGISSAQDALEKIRAGA 311 (335)
T ss_pred HHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCC-CCCEEEECCCCCHHHHHHHHHcCC
Confidence 8899999998652111111111100 122221111 1135667777776632 599999999999999999999999
Q ss_pred cEEEeccccccC
Q 022271 158 QGICLGTRFVAS 169 (300)
Q Consensus 158 dgV~~GT~fl~t 169 (300)
+.||+||+++.-
T Consensus 312 ~~Vqv~ta~~~~ 323 (335)
T TIGR01036 312 SLLQIYSGFIYW 323 (335)
T ss_pred cHHHhhHHHHHh
Confidence 999999999863
No 70
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.80 E-value=1.3e-07 Score=85.60 Aligned_cols=121 Identities=22% Similarity=0.230 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHhh-cCCcEEeeeecCCC-----cHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec
Q 022271 46 EAPDYLRDLIRKTRSL-TERPFGVGVVLAFP-----HNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~-----~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~ 116 (300)
.+.+.+.+.++++|+. ++.|+- -++...| .+.+++.+.+.|++.+.+. ..|. .++++.+++.|+..+..
T Consensus 69 ~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip-Dlp~ee~~~~~~~~~~~gl~~i~l 146 (256)
T TIGR00262 69 MTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA-DLPLEESGDLVEAAKKHGVKPIFL 146 (256)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEEC-CCChHHHHHHHHHHHHCCCcEEEE
Confidence 4667888889999875 678873 3333222 3678999999999999887 3443 45667778888764421
Q ss_pred -------------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 117 -------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 117 -------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
......+.++++.. +.||++.|||.+++++.+++..||||
T Consensus 147 v~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~---~~pi~vgfGI~~~e~~~~~~~~GADg 223 (256)
T TIGR00262 147 VAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS---AKPVLVGFGISKPEQVKQAIDAGADG 223 (256)
T ss_pred ECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc---CCCEEEeCCCCCHHHHHHHHHcCCCE
Confidence 01234555566554 68999999999999999999999999
Q ss_pred EEeccccccCcc
Q 022271 160 ICLGTRFVASEE 171 (300)
Q Consensus 160 V~~GT~fl~t~E 171 (300)
|++||+++-.-|
T Consensus 224 vVvGSaiv~~~~ 235 (256)
T TIGR00262 224 VIVGSAIVKIIE 235 (256)
T ss_pred EEECHHHHHHHH
Confidence 999999986544
No 71
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.79 E-value=1.9e-08 Score=92.87 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCc---HHHHHHHHHc--CCcEEEEcCCCCcHHHHH--H----H---HHCCCe
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSE--KVAVLQVSWGEYSEELVL--E----A---HSAGVK 112 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~---~~~~~~~~e~--g~~~i~~~~G~~~~~~v~--~----~---~~~G~~ 112 (300)
+++.+.+.++++|+.++.|+.|++.+.... .+.++.+.+. |++.|+..--..+...++ + + ...|..
T Consensus 141 ~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~ 220 (294)
T cd04741 141 DFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGL 220 (294)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCc
Confidence 789999999999999999999999876532 2344555567 888877431000000111 0 0 011211
Q ss_pred Eeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 113 VVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 113 v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.... .-.+..+.++++.++. ++|||+.|||.|++|+.+++.+|||+||+||.++.
T Consensus 221 SG~~i~~~al~~v~~~~~~~~~-~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 221 AGAYLHPLALGNVRTFRRLLPS-EIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred CchhhHHHHHHHHHHHHHhcCC-CCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 1110 1134566777777631 59999999999999999999999999999999996
No 72
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.79 E-value=3e-08 Score=92.88 Aligned_cols=123 Identities=20% Similarity=0.237 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHhhcC-----CcEEeeeecCCC---cHHHHHHHHHcCCcEEEEcCCCCcHHHHH--HH-HHCCCeEe
Q 022271 46 EAPDYLRDLIRKTRSLTE-----RPFGVGVVLAFP---HNENIKAILSEKVAVLQVSWGEYSEELVL--EA-HSAGVKVV 114 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~-----~P~gvnl~~~~~---~~~~~~~~~e~g~~~i~~~~G~~~~~~v~--~~-~~~G~~v~ 114 (300)
.+++.+.+.++.+|+.++ .|+.|++..... ..+.++.+.+.|++.|.++.......... .. ...|..-.
T Consensus 180 ~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG 259 (327)
T cd04738 180 QGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG 259 (327)
T ss_pred cCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC
Confidence 467899999999998875 899999986543 24567778889999998764322111100 00 00111111
Q ss_pred ec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 115 PQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 115 ~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.. .-.+..+.++++.+. .++|||+.|||.|++|+.+++..|||+||+||.|+.-
T Consensus 260 ~~~~~~~l~~v~~l~~~~~-~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~ 315 (327)
T cd04738 260 APLKERSTEVLRELYKLTG-GKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYE 315 (327)
T ss_pred hhhhHHHHHHHHHHHHHhC-CCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhh
Confidence 00 113567778887763 1599999999999999999999999999999999864
No 73
>PLN02826 dihydroorotate dehydrogenase
Probab=98.78 E-value=2.3e-08 Score=95.84 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHhh---------cCCcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcC---CCCcHHHHH-HH-HHC
Q 022271 47 APDYLRDLIRKTRSL---------TERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSW---GEYSEELVL-EA-HSA 109 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~---------~~~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~---G~~~~~~v~-~~-~~~ 109 (300)
+++.+.+.++.+++. +++|+.|++.+.... .+.++.+.+.|++.|+.+- +.+ .++.. .. .+.
T Consensus 237 ~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~-~dl~~~~~~~~~ 315 (409)
T PLN02826 237 GRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRP-DSVLGHPHADEA 315 (409)
T ss_pred ChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCc-cchhcccccccC
Confidence 567777777777543 358999999876542 4557788899999987652 222 11111 01 123
Q ss_pred CCeEeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 110 GVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 110 G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|+..... .-.+..+.++++.+.+ ++|||+.|||.|++|+.+++.+||+.||++|.|+.-
T Consensus 316 GGlSG~pl~~~sl~~v~~l~~~~~~-~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 316 GGLSGKPLFDLSTEVLREMYRLTRG-KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE 376 (409)
T ss_pred CCcCCccccHHHHHHHHHHHHHhCC-CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc
Confidence 4333221 1246788888887743 699999999999999999999999999999999984
No 74
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.75 E-value=2.8e-07 Score=83.14 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=108.5
Q ss_pred CCCcHHHHHHHHhCCceEEecCCCCCCHHHHH-----------HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCc
Q 022271 21 DISGPELVAAVANAGGLGLLRAPDWEAPDYLR-----------DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA 89 (300)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~~~~~~~l~-----------~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~ 89 (300)
-+++++=|.-.-+||..+++... .-|.+++ +.|+++|+..+.|+ +.++-. .+...++.+.+.|++
T Consensus 14 ~v~~~~qa~~ae~aga~~v~~~~--~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPV-IGi~K~-~~~~Ea~~L~eaGvD 89 (283)
T cd04727 14 DVTNAEQARIAEEAGAVAVMALE--RVPADIRAAGGVARMADPKMIKEIMDAVSIPV-MAKVRI-GHFVEAQILEALGVD 89 (283)
T ss_pred EeCCHHHHHHHHHcCceEEeeec--cCchhhhhcCCeeecCCHHHHHHHHHhCCCCe-EEeeeh-hHHHHHHHHHHcCCC
Confidence 37888888888999999998642 1122222 46888888888897 444432 236678899999999
Q ss_pred EEEEcC-CCCcHHHHHHHHH-CCCeEeec--------------------c------------------------------
Q 022271 90 VLQVSW-GEYSEELVLEAHS-AGVKVVPQ--------------------D------------------------------ 117 (300)
Q Consensus 90 ~i~~~~-G~~~~~~v~~~~~-~G~~v~~~--------------------~------------------------------ 117 (300)
+|.-+- -+|.++++...|. .+..++.+ .
T Consensus 90 iIDaT~r~rP~~~~~~~iK~~~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~ 169 (283)
T cd04727 90 MIDESEVLTPADEEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSE 169 (283)
T ss_pred EEeccCCCCcHHHHHHHHHHHcCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCH
Confidence 996331 1244567777765 36666654 0
Q ss_pred -----------ChhchHHHHHHhhCCCCCcEE--EccCCCChHHHHHHHHCCCcEEEeccccccCcccC-CCHHHHHHHH
Q 022271 118 -----------GLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLV 183 (300)
Q Consensus 118 -----------~~~~ll~~v~~~~~~~~iPVi--aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~-~~~~~k~~i~ 183 (300)
..+.+|.++++.+ ++||| +.|||.+++++..++.+||++|.+||.++.+..-. ....|++++.
T Consensus 170 ~t~~~~~~~~~~d~elLk~l~~~~---~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 170 EELYAVAKEIQAPYELVKETAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred HHHHhhhcccCCCHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 0234566666665 79997 99999999999999999999999999998653211 2344555554
Q ss_pred c
Q 022271 184 E 184 (300)
Q Consensus 184 ~ 184 (300)
.
T Consensus 247 ~ 247 (283)
T cd04727 247 H 247 (283)
T ss_pred h
Confidence 4
No 75
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.74 E-value=1.5e-08 Score=95.46 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHhhcC-----CcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHH---HCCCeEe
Q 022271 46 EAPDYLRDLIRKTRSLTE-----RPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVLEAH---SAGVKVV 114 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~-----~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~---~~G~~v~ 114 (300)
.+++.+.+.++++|+.++ .|+.|++...... .+.++.+.+.|++.|+++.+.....-+.... ..|....
T Consensus 189 ~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG 268 (344)
T PRK05286 189 QYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG 268 (344)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc
Confidence 367889999999999876 8999999965442 4567778889999999885432111011100 1121111
Q ss_pred ec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 115 PQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 115 ~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.. .-.+..+.++++.+.. ++|||+.|||.|++|+.+++.+|||+||+||.++.-
T Consensus 269 ~~~~~~~l~~v~~l~~~~~~-~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~ 324 (344)
T PRK05286 269 RPLFERSTEVIRRLYKELGG-RLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYE 324 (344)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 00 0134577777777632 599999999999999999999999999999999864
No 76
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.74 E-value=1.4e-07 Score=85.33 Aligned_cols=122 Identities=19% Similarity=0.230 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHH-hhcCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCcH---HHHHHHHHCCCeEeec-
Q 022271 46 EAPDYLRDLIRKTR-SLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQ- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r-~~~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~---~~v~~~~~~G~~v~~~- 116 (300)
.+.+.+.+.++++| +..+.|+.+ |.+.....+..++.+.+.|++.+.+. +.|++ ++++.+++.|+..+..
T Consensus 71 ~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-DLp~ee~~~~~~~~~~~gl~~I~lv 149 (258)
T PRK13111 71 VTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP-DLPPEEAEELRAAAKKHGLDLIFLV 149 (258)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 35567778888888 445678642 22222334678889999999988885 55543 5566667778776642
Q ss_pred ------------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 117 ------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 117 ------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
.....++.++++.. ++||++.+||.+++++.+++.. ||||
T Consensus 150 ap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~---~~pv~vGfGI~~~e~v~~~~~~-ADGv 225 (258)
T PRK13111 150 APTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT---DLPVAVGFGISTPEQAAAIAAV-ADGV 225 (258)
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC---CCcEEEEcccCCHHHHHHHHHh-CCEE
Confidence 01234666677655 7999999999999999999986 9999
Q ss_pred EeccccccCccc
Q 022271 161 CLGTRFVASEES 172 (300)
Q Consensus 161 ~~GT~fl~t~Es 172 (300)
.+||+|+-..|.
T Consensus 226 iVGSaiv~~~~~ 237 (258)
T PRK13111 226 IVGSALVKIIEE 237 (258)
T ss_pred EEcHHHHHHHHh
Confidence 999999977653
No 77
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.72 E-value=3.6e-07 Score=82.48 Aligned_cols=143 Identities=21% Similarity=0.284 Sum_probs=99.4
Q ss_pred CCCcHHHHHHHHhCCceEEecCCCCCCHHHHH-----------HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCc
Q 022271 21 DISGPELVAAVANAGGLGLLRAPDWEAPDYLR-----------DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA 89 (300)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~~~~~~~l~-----------~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~ 89 (300)
-+++++=|.-.-+||...+++.. .-|..++ +.|+++++..+.|+ +.+.-. .+...++.+.+.|++
T Consensus 16 dv~~~eqa~iae~aga~avm~le--~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPV-ig~~ki-gh~~Ea~~L~~~GvD 91 (287)
T TIGR00343 16 DVVNPEQAKIAEEAGAVAVMALE--RVPADIRASGGVARMSDPKMIKEIMDAVSIPV-MAKVRI-GHFVEAQILEALGVD 91 (287)
T ss_pred EeCCHHHHHHHHHcCceEEEeec--cCchhhHhcCCeeecCCHHHHHHHHHhCCCCE-EEEeec-cHHHHHHHHHHcCCC
Confidence 37889999888899999998642 2233332 35778888788887 333321 235677888899999
Q ss_pred EEEEcC-CCCcHHHHHHHHH-CCCeEeec--------------------c------------------------------
Q 022271 90 VLQVSW-GEYSEELVLEAHS-AGVKVVPQ--------------------D------------------------------ 117 (300)
Q Consensus 90 ~i~~~~-G~~~~~~v~~~~~-~G~~v~~~--------------------~------------------------------ 117 (300)
+|.-+- -+|.++.+...|. .+..++.+ .
T Consensus 92 iIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~ 171 (287)
T TIGR00343 92 YIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLE 171 (287)
T ss_pred EEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccc
Confidence 996332 2244555555554 35555543 0
Q ss_pred ------------ChhchHHHHHHhhCCCCCcEE--EccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 118 ------------GLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 118 ------------~~~~ll~~v~~~~~~~~iPVi--aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
..+.+|.++++.. ++||+ +.|||.|++++..++.+|||||.+||.+.-+.
T Consensus 172 ~~~~~~~a~~~~~~~elLkei~~~~---~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~ 235 (287)
T TIGR00343 172 EEDLAAVAKELRVPVELLLEVLKLG---KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS 235 (287)
T ss_pred hhHHhhhhcccCCCHHHHHHHHHhC---CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCC
Confidence 1234566666654 79998 99999999999999999999999999998653
No 78
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.71 E-value=5e-07 Score=79.58 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=93.9
Q ss_pred CcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-CCCc--
Q 022271 23 SGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYS-- 99 (300)
Q Consensus 23 s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-G~~~-- 99 (300)
...++|.+..++|.-++-..-.........+.++.+|+..+.|+-+.-+. .+.+.++.+.+.|++.|.+.. ..++
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i--~~~~~v~~~~~~Gad~v~l~~~~~~~~~ 109 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFI--IDPYQIYEARAAGADAVLLIVAALDDEQ 109 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCee--cCHHHHHHHHHcCCCEEEEeeccCCHHH
Confidence 34589999999887554321000011112246777777778888654222 234689999999999997642 2222
Q ss_pred -HHHHHHHHHCCCeEeec----------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHH
Q 022271 100 -EELVLEAHSAGVKVVPQ----------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 150 (300)
Q Consensus 100 -~~~v~~~~~~G~~v~~~----------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~ 150 (300)
+++++..+..|+.++.. ...+.++.++++.+. .++||++.|||.+++++.
T Consensus 110 ~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia~gGI~s~edi~ 188 (217)
T cd00331 110 LKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTPEDVK 188 (217)
T ss_pred HHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEEEcCCCCHHHHH
Confidence 34444456677765432 011234566665531 268999999999999999
Q ss_pred HHHHCCCcEEEeccccccC
Q 022271 151 AALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 151 aal~lGAdgV~~GT~fl~t 169 (300)
+++.+|||||++||+++-.
T Consensus 189 ~~~~~Ga~gvivGsai~~~ 207 (217)
T cd00331 189 RLAEAGADAVLIGESLMRA 207 (217)
T ss_pred HHHHcCCCEEEECHHHcCC
Confidence 9999999999999999854
No 79
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.65 E-value=4.2e-07 Score=77.21 Aligned_cols=147 Identities=27% Similarity=0.328 Sum_probs=94.0
Q ss_pred ecCCCCCCC--CcHHHHHHHHhCCceEEecCCCC-CCHH---HHH-HHHHHHHhhcCCcEEeeeecCCCcHHH---HHHH
Q 022271 14 VQAPLGPDI--SGPELVAAVANAGGLGLLRAPDW-EAPD---YLR-DLIRKTRSLTERPFGVGVVLAFPHNEN---IKAI 83 (300)
Q Consensus 14 i~apM~~g~--s~~~la~avs~aGglG~i~~~~~-~~~~---~l~-~~i~~~r~~~~~P~gvnl~~~~~~~~~---~~~~ 83 (300)
.+++|..+. ...+++..+.+.| .+.+..... .++. ... +.+..++...+.|+.+++....+.... .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~G-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 2 ILALLAGGPSGDPVELAKAAAEAG-ADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred eeeccccCchHHHHHHHHHHHcCC-CCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 467887332 3457777766654 444433210 0111 010 235556666688999999876554322 3688
Q ss_pred HHcCCcEEEEcCCCC-----cHHHHHHHHHC--CCeEeecc---------------------------C-----h---hc
Q 022271 84 LSEKVAVLQVSWGEY-----SEELVLEAHSA--GVKVVPQD---------------------------G-----L---IS 121 (300)
Q Consensus 84 ~e~g~~~i~~~~G~~-----~~~~v~~~~~~--G~~v~~~~---------------------------~-----~---~~ 121 (300)
.+.+++.|.++...+ ..++++.+++. +..++... + . ..
T Consensus 81 ~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~ 160 (200)
T cd04722 81 RAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADL 160 (200)
T ss_pred HHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHH
Confidence 899999999987764 35677777765 66655430 0 0 01
Q ss_pred hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
.+..+... .++||+++|||.+++++.+++.+|||+|++||
T Consensus 161 ~~~~~~~~---~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 161 LLILAKRG---SKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred HHHHHHhc---CCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 22223222 37999999999999999999999999999996
No 80
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=98.64 E-value=3.3e-08 Score=91.86 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=98.7
Q ss_pred ccceecCCCCCCCCcH---HHHHHHHhCCceEE----ecCCCC-------CCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 10 EYGIVQAPLGPDISGP---ELVAAVANAGGLGL----LRAPDW-------EAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~---~la~avs~aGglG~----i~~~~~-------~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+.|+|..-+ |.+.. +++..+..+|.... ++|+|. .+++.+.+.++++|+.+++|+.|+|.+...
T Consensus 92 ~~pvI~Si~--G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~ 169 (310)
T PRK02506 92 NKPHFLSVV--GLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFD 169 (310)
T ss_pred CCCEEEEEE--eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCCCC
Confidence 368886544 46644 55555556663333 244321 268899999999999999999999998764
Q ss_pred cHHHHHHH---HHcCCcEEEEcC----CCCc-----HHHHHHHHHCCCeEeec--cChhchHHHHHHhhCCCCCcEEEcc
Q 022271 76 HNENIKAI---LSEKVAVLQVSW----GEYS-----EELVLEAHSAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAG 141 (300)
Q Consensus 76 ~~~~~~~~---~e~g~~~i~~~~----G~~~-----~~~v~~~~~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaG 141 (300)
..+..+.+ .+.+++.|...- |... ......-...|...... .-.+..+.++++.+.. ++|||+.|
T Consensus 170 ~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~-~ipIig~G 248 (310)
T PRK02506 170 IVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNP-SIQIIGTG 248 (310)
T ss_pred HHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCC-CCCEEEEC
Confidence 43333333 345666654421 1100 00010001112222111 1145677777777632 69999999
Q ss_pred CCCChHHHHHHHHCCCcEEEecccccc
Q 022271 142 GIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 142 GI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
||.+++|+.+++.+||+.||++|.++.
T Consensus 249 GI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 249 GVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 999999999999999999999999997
No 81
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.61 E-value=4.9e-07 Score=81.29 Aligned_cols=125 Identities=18% Similarity=0.243 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHhh-cCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec-
Q 022271 46 EAPDYLRDLIRKTRSL-TERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~-~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~- 116 (300)
.+.++..+.++++|+. .+.|+.+ |.+.+...+..++.+.+.|++.+.+. ..|+ .++.+.++++|+..+..
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivp-DLP~ee~~~~~~~~~~~gi~~I~lv 154 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVP-DLPPEESDELLKAAEKHGIDPIFLV 154 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeC-CCChHHHHHHHHHHHHcCCcEEEEe
Confidence 4667788889999865 6678865 44444444667778888888877665 4443 23444555666665532
Q ss_pred ----------------------------cC--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 117 ----------------------------DG--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 117 ----------------------------~~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
.| +-.++..+++.. ++||+..-||+++++++++... ||||
T Consensus 155 aPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~---~~Pv~vGFGIs~~e~~~~v~~~-ADGV 230 (265)
T COG0159 155 APTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT---DVPVLVGFGISSPEQAAQVAEA-ADGV 230 (265)
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc---CCCeEEecCcCCHHHHHHHHHh-CCeE
Confidence 01 234555555554 8999999999999999999999 9999
Q ss_pred EeccccccCcccCCC
Q 022271 161 CLGTRFVASEESYAH 175 (300)
Q Consensus 161 ~~GT~fl~t~Es~~~ 175 (300)
.+||+|+-.-|....
T Consensus 231 IVGSAiV~~i~~~~~ 245 (265)
T COG0159 231 IVGSAIVKIIEEGLD 245 (265)
T ss_pred EEcHHHHHHHHhccc
Confidence 999999988776543
No 82
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=98.60 E-value=2.7e-07 Score=89.17 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=104.1
Q ss_pred cHHHHHHHHhCCceEEecCCC---CCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC----
Q 022271 24 GPELVAAVANAGGLGLLRAPD---WEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---- 95 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~---~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~---- 95 (300)
+++.+..--..=|.|.++... ..+++.|.+.|..+|+++ .++++|+|....+.....--+.++++|+|.++.
T Consensus 260 ~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GG 339 (485)
T COG0069 260 TPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGG 339 (485)
T ss_pred CHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCc
Confidence 345555444455677775432 358899999999999985 477999998766554444448889999999974
Q ss_pred -CCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhC----CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 96 -GEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIG----DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 96 -G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~----~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
|..|...++ .+| .+++..++++.+.+. ...+-|+++||+.|++|++.+++||||.|-+||..+.+.
T Consensus 340 TGAsP~~~~~---~~G------iP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~ 410 (485)
T COG0069 340 TGASPLTSID---HAG------IPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVAL 410 (485)
T ss_pred CCCCcHhHhh---cCC------chHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHHHh
Confidence 223444443 456 456667777777652 136899999999999999999999999999999999987
Q ss_pred ccC
Q 022271 171 ESY 173 (300)
Q Consensus 171 Es~ 173 (300)
-|.
T Consensus 411 GCi 413 (485)
T COG0069 411 GCI 413 (485)
T ss_pred hhH
Confidence 654
No 83
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.57 E-value=1.7e-06 Score=78.53 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=97.0
Q ss_pred HHHHHHHHhCCceEEecC--CCC--CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc-
Q 022271 25 PELVAAVANAGGLGLLRA--PDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS- 99 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~--~~~--~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~- 99 (300)
.++|.+..++|.-++... ..+ -+. +.|+.+|+.++.|+-.+=+.. +..+++.+.+.|+++|.+.....+
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~----~~l~~v~~~v~iPvl~kdfi~--~~~qi~~a~~~GAD~VlLi~~~l~~ 146 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSL----EYLRAARAAVSLPVLRKDFII--DPYQIYEARAAGADAILLIVAALDD 146 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCH----HHHHHHHHhcCCCEEeeeecC--CHHHHHHHHHcCCCEEEEEeccCCH
Confidence 689999899887665321 111 122 567778887889986543332 344799999999999987643312
Q ss_pred ---HHHHHHHHHCCCeEeec----------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 100 ---EELVLEAHSAGVKVVPQ----------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 100 ---~~~v~~~~~~G~~v~~~----------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
.++++.+++.|..++.. ...+....++.+.+.+ ++|+|+.|||.++++
T Consensus 147 ~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~-~~~vIaegGI~t~ed 225 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPS-DRLVVSESGIFTPED 225 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCC-CCEEEEEeCCCCHHH
Confidence 35666667778776543 0123344555554421 469999999999999
Q ss_pred HHHHHHCCCcEEEeccccccCc
Q 022271 149 YVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+..++.+|||+|.+||.++.++
T Consensus 226 ~~~~~~~Gad~vlVGsaI~~~~ 247 (260)
T PRK00278 226 LKRLAKAGADAVLVGESLMRAD 247 (260)
T ss_pred HHHHHHcCCCEEEECHHHcCCC
Confidence 9999999999999999999764
No 84
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.57 E-value=1.2e-06 Score=77.88 Aligned_cols=48 Identities=25% Similarity=0.510 Sum_probs=43.1
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.++.++++.+ ++||+++|||.+.+|+.+++..|||||++||+|+..
T Consensus 177 ~~~~i~~i~~~~---~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 177 NFELTKELVKAV---NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred CHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 356788888776 799999999999999999999999999999999865
No 85
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.56 E-value=5.9e-07 Score=80.63 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhhcCCcEEeeeecC-CC-----cHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec--
Q 022271 48 PDYLRDLIRKTRSLTERPFGVGVVLA-FP-----HNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ-- 116 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~~~P~gvnl~~~-~~-----~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~-- 116 (300)
.+...+.++++|+.++.|+. ++.. .+ .+..++.+.+.|++.+.+. ..|+ .++++.++++|+..+..
T Consensus 61 ~~~~~~~~~~vr~~~~~pv~--lm~y~n~~~~~G~~~fi~~~~~aG~~giiip-Dl~~ee~~~~~~~~~~~g~~~i~~i~ 137 (242)
T cd04724 61 LKDVLELVKEIRKKNTIPIV--LMGYYNPILQYGLERFLRDAKEAGVDGLIIP-DLPPEEAEEFREAAKEYGLDLIFLVA 137 (242)
T ss_pred HHHHHHHHHHHhhcCCCCEE--EEEecCHHHHhCHHHHHHHHHHCCCcEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 34566778888877777853 3333 11 3678899999999988874 2332 35666777788765532
Q ss_pred ---------------------------c--------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 117 ---------------------------D--------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 117 ---------------------------~--------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
. .....+.++++.. ++||++.|||.+.+++..+... ||+|+
T Consensus 138 P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~---~~pI~vggGI~~~e~~~~~~~~-ADgvV 213 (242)
T cd04724 138 PTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT---DLPIAVGFGISTPEQAAEVAKY-ADGVI 213 (242)
T ss_pred CCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC---CCcEEEEccCCCHHHHHHHHcc-CCEEE
Confidence 0 1224455555543 7999999999999999999999 99999
Q ss_pred eccccccCcccC
Q 022271 162 LGTRFVASEESY 173 (300)
Q Consensus 162 ~GT~fl~t~Es~ 173 (300)
+||+|+-..|..
T Consensus 214 vGSaiv~~~~~~ 225 (242)
T cd04724 214 VGSALVKIIEEG 225 (242)
T ss_pred ECHHHHHHHHhc
Confidence 999998776543
No 86
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=98.56 E-value=8.2e-08 Score=90.51 Aligned_cols=67 Identities=30% Similarity=0.427 Sum_probs=57.1
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
.+++..||++++++.. ++||++.|||++|.|+++||+|||++|.+|.+||..-.....+...+.|-.
T Consensus 257 ~st~~~L~ei~~av~~-~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~GV~~~le~ 323 (360)
T COG1304 257 ISTADSLPEIVEAVGD-RIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAGVERVLEI 323 (360)
T ss_pred CChHHHHHHHHHHhCC-CeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHHHHHHHHHH
Confidence 6789999999999852 499999999999999999999999999999999998766665555554443
No 87
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.54 E-value=8.5e-08 Score=88.49 Aligned_cols=156 Identities=19% Similarity=0.261 Sum_probs=92.9
Q ss_pred ccceecCCCCCCCC---cH---HHHHHHHhCCc--eEE-ecCCCC-------CCHHHHHHHHHHHHhhcCCcEEeeeecC
Q 022271 10 EYGIVQAPLGPDIS---GP---ELVAAVANAGG--LGL-LRAPDW-------EAPDYLRDLIRKTRSLTERPFGVGVVLA 73 (300)
Q Consensus 10 ~~Pii~apM~~g~s---~~---~la~avs~aGg--lG~-i~~~~~-------~~~~~l~~~i~~~r~~~~~P~gvnl~~~ 73 (300)
..|||..-++ .+ .. +++..+. +|. +=+ ++|++. .+++...+.++.+|+.++.|+.|+|.+.
T Consensus 96 ~~pvi~Si~~--~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~ 172 (295)
T PF01180_consen 96 DIPVIASING--DSEEEIEDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPN 172 (295)
T ss_dssp CEEEEEEE-T--SSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-ST
T ss_pred ceeEEEEeec--CCchhHHHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 5688875543 45 33 4444443 343 222 355432 1345555666777888899999999987
Q ss_pred CCcH---HHHHHHHHcCCcEEEEcCCCCcHHHHH--HHH-----HCCCeEeec--cChhchHHHHHHhhCCCCCcEEEcc
Q 022271 74 FPHN---ENIKAILSEKVAVLQVSWGEYSEELVL--EAH-----SAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAG 141 (300)
Q Consensus 74 ~~~~---~~~~~~~e~g~~~i~~~~G~~~~~~v~--~~~-----~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaG 141 (300)
.++. +.+..+.+.+++.|...-..+....++ ..+ ..|..-... .-.+..+.++++.++. ++|||+.|
T Consensus 173 ~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~-~i~Iig~G 251 (295)
T PF01180_consen 173 FTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQ-DIPIIGVG 251 (295)
T ss_dssp SSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTT-SSEEEEES
T ss_pred CCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhcccc-ceEEEEeC
Confidence 6653 345555578999887421110000010 000 112222211 1246677888888732 59999999
Q ss_pred CCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 142 GIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 142 GI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
||.|++|+.+++.+||+.||++|.++..
T Consensus 252 GI~s~~da~e~l~aGA~~Vqv~Sal~~~ 279 (295)
T PF01180_consen 252 GIHSGEDAIEFLMAGASAVQVCSALIYR 279 (295)
T ss_dssp S--SHHHHHHHHHHTESEEEESHHHHHH
T ss_pred CcCCHHHHHHHHHhCCCHheechhhhhc
Confidence 9999999999999999999999999764
No 88
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.54 E-value=4.1e-07 Score=82.15 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHH-hhcCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec-
Q 022271 46 EAPDYLRDLIRKTR-SLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r-~~~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~- 116 (300)
.+.+++.+.++++| +..+.|+-+ |.+.....+..++.+.+.|++.+.+- ..|+ .++.+.+++.|+..+..
T Consensus 69 ~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIip-DLP~ee~~~~~~~~~~~gl~~I~lv 147 (259)
T PF00290_consen 69 FTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIP-DLPPEESEELREAAKKHGLDLIPLV 147 (259)
T ss_dssp --HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEET-TSBGGGHHHHHHHHHHTT-EEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEc-CCChHHHHHHHHHHHHcCCeEEEEE
Confidence 46677888899999 667778744 22222223556777777777777765 4443 34445556667665542
Q ss_pred ----------------------------c--------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 117 ----------------------------D--------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 117 ----------------------------~--------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
. .+..++..+++.. ++||++.-||++++++.+.. .|||||
T Consensus 148 ~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~---~~Pv~vGFGI~~~e~~~~~~-~~aDGv 223 (259)
T PF00290_consen 148 APTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT---DLPVAVGFGISTPEQAKKLA-AGADGV 223 (259)
T ss_dssp ETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT---SS-EEEESSS-SHHHHHHHH-TTSSEE
T ss_pred CCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc---CcceEEecCCCCHHHHHHHH-ccCCEE
Confidence 1 1234566666665 89999999999999999888 999999
Q ss_pred EeccccccCccc
Q 022271 161 CLGTRFVASEES 172 (300)
Q Consensus 161 ~~GT~fl~t~Es 172 (300)
.+||+|+-.-+.
T Consensus 224 IVGSa~v~~i~~ 235 (259)
T PF00290_consen 224 IVGSAFVKIIEE 235 (259)
T ss_dssp EESHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 999999987654
No 89
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.51 E-value=4e-06 Score=74.41 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=69.2
Q ss_pred HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
..+.+++.|..++-.-.. .....+++.+.|...+.. .....++..+++.. ++|||+.|||.+++|
T Consensus 115 aa~~L~~~Gf~vlpyc~d--d~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~---~vpVI~egGI~tped 189 (248)
T cd04728 115 AAEILVKEGFTVLPYCTD--DPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERA---DVPVIVDAGIGTPSD 189 (248)
T ss_pred HHHHHHHCCCEEEEEeCC--CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhC---CCcEEEeCCCCCHHH
Confidence 344555558777733223 345677777888777643 12455677777664 799999999999999
Q ss_pred HHHHHHCCCcEEEeccccccCcccC-CCHHHHHHHHc
Q 022271 149 YVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLVE 184 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t~Es~-~~~~~k~~i~~ 184 (300)
+..++.+|||||.+||+..-+..-. ....|+.++..
T Consensus 190 a~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 190 AAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999997433211 13445555443
No 90
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.47 E-value=5.4e-06 Score=73.62 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecC--C----Cc-H---HHHHHHHHcCCcEE-EEcCCCCcHHHHHHHHHCCCeEe
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLA--F----PH-N---ENIKAILSEKVAVL-QVSWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~--~----~~-~---~~~~~~~e~g~~~i-~~~~G~~~~~~v~~~~~~G~~v~ 114 (300)
.+.++--..-+-.|++++.++ |+|=.. . |+ . +..+.+++.|..++ ..+ . .....+++.+.|...+
T Consensus 73 ~ta~eAv~~a~lare~~~~~~-iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~-~--d~~~ak~l~~~G~~~v 148 (250)
T PRK00208 73 RTAEEAVRTARLAREALGTNW-IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCT-D--DPVLAKRLEEAGCAAV 148 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCe-EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeC-C--CHHHHHHHHHcCCCEe
Confidence 344444444444566655444 554321 1 11 2 33444455577777 333 2 3456777777887776
Q ss_pred ec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccC-CCHHHHHHHH
Q 022271 115 PQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLV 183 (300)
Q Consensus 115 ~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~-~~~~~k~~i~ 183 (300)
.. .....++..+++.. ++|||+.|||++++|+.+++.+|||||.+||+..-+..-. ....|++++.
T Consensus 149 mPlg~pIGsg~gi~~~~~i~~i~e~~---~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 149 MPLGAPIGSGLGLLNPYNLRIIIEQA---DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred CCCCcCCCCCCCCCCHHHHHHHHHhc---CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 43 11345566666654 7999999999999999999999999999999997532211 2345555554
Q ss_pred c
Q 022271 184 E 184 (300)
Q Consensus 184 ~ 184 (300)
.
T Consensus 226 a 226 (250)
T PRK00208 226 A 226 (250)
T ss_pred H
Confidence 3
No 91
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.46 E-value=4.1e-06 Score=73.13 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=85.0
Q ss_pred HHHHHHHhCCceEEecCCC-CCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~ 104 (300)
+.+..+.++| +..+..-. -.+..++.+.+++++++.. +++++++.+ ++++.+.+.|++.|.+.....+...+.
T Consensus 25 ~~~~~~~~~g-v~~v~lr~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~----~~~~~a~~~gad~vh~~~~~~~~~~~~ 98 (212)
T PRK00043 25 EVVEAALEGG-VTLVQLREKGLDTRERLELARALKELCR-RYGVPLIVN----DRVDLALAVGADGVHLGQDDLPVADAR 98 (212)
T ss_pred HHHHHHHhcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCeEEEe----ChHHHHHHcCCCEEecCcccCCHHHHH
Confidence 4444555666 44442210 1345556667777766543 467777763 467788888888887654332333333
Q ss_pred HHHHCCCeEe--------------------ec---cC-----------hhchHHHHHHhhCCCCCcEEEccCCCChHHHH
Q 022271 105 EAHSAGVKVV--------------------PQ---DG-----------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 150 (300)
Q Consensus 105 ~~~~~G~~v~--------------------~~---~~-----------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~ 150 (300)
..++.+..+. .. .. .+..+.++++..+ ++||++.||| +.+.+.
T Consensus 99 ~~~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v~a~GGI-~~~~i~ 175 (212)
T PRK00043 99 ALLGPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG--DIPIVAIGGI-TPENAP 175 (212)
T ss_pred HHcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHH
Confidence 3333333332 21 00 1456777777662 3999999999 789999
Q ss_pred HHHHCCCcEEEeccccccC
Q 022271 151 AALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 151 aal~lGAdgV~~GT~fl~t 169 (300)
+++.+||++|.+||.+..+
T Consensus 176 ~~~~~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 176 EVLEAGADGVAVVSAITGA 194 (212)
T ss_pred HHHHcCCCEEEEeHHhhcC
Confidence 9999999999999998765
No 92
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.45 E-value=3.3e-06 Score=76.51 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=90.9
Q ss_pred CCcHHHHHHHHhCCceEEecCC----------C---CCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCC
Q 022271 22 ISGPELVAAVANAGGLGLLRAP----------D---WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (300)
Q Consensus 22 ~s~~~la~avs~aGglG~i~~~----------~---~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~ 88 (300)
+++++=+.-...+|...+.... + +.+|+ .|+++|+..+.|+-...-. .+...++.+.+.|+
T Consensus 24 v~~~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~----~I~aIk~~V~iPVigk~Ri--gh~~Ea~~L~~~Gv 97 (293)
T PRK04180 24 VVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPK----MIEEIMDAVSIPVMAKARI--GHFVEAQILEALGV 97 (293)
T ss_pred eCCHHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHH----HHHHHHHhCCCCeEEeehh--hHHHHHHHHHHcCC
Confidence 5666666555555553332110 0 23564 4557777788887432221 23566788889999
Q ss_pred cEEEEcC-CCCcHHHHHHHHH-CCCeEeec--------------------------------------------------
Q 022271 89 AVLQVSW-GEYSEELVLEAHS-AGVKVVPQ-------------------------------------------------- 116 (300)
Q Consensus 89 ~~i~~~~-G~~~~~~v~~~~~-~G~~v~~~-------------------------------------------------- 116 (300)
++|.-+- -+|.++.+...|. .+..++.+
T Consensus 98 DiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt 177 (293)
T PRK04180 98 DYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMS 177 (293)
T ss_pred CEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCC
Confidence 9996331 1233455555543 35555443
Q ss_pred -----------cChhchHHHHHHhhCCCCCcEE--EccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 -----------DGLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 -----------~~~~~ll~~v~~~~~~~~iPVi--aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
...+.+|.++++.. ++||+ +.|||.|++++..++.+||++|.+||.+..+.
T Consensus 178 ~~~~~~~a~~~~~~~elL~ei~~~~---~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~ 241 (293)
T PRK04180 178 EDELYTAAKELQAPYELVKEVAELG---RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSG 241 (293)
T ss_pred HHHHHhhccccCCCHHHHHHHHHhC---CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCC
Confidence 01345677777765 79998 99999999999999999999999999998653
No 93
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.43 E-value=2.1e-06 Score=77.22 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=80.3
Q ss_pred HHHHHHHhhcCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCC------cHHHHHHHHHCCCeEeec------
Q 022271 53 DLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEY------SEELVLEAHSAGVKVVPQ------ 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~------~~~~v~~~~~~G~~v~~~------ 116 (300)
+.++++|+.++.|+.+ |.+ .....+.++.+.+.|++.+.++. .| ..++++.+++.|+..+..
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~-~~~~~~~i~~~~~~Gadgvii~d-lp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~ 141 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDY-VDSLDNFLNMARDVGADGVLFPD-LLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP 141 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchh-hhCHHHHHHHHHHcCCCEEEECC-CCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 5778888778889731 221 12235678899999999999872 22 246777788888887643
Q ss_pred ----------------------cC------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 ----------------------DG------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 ----------------------~~------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.+ ....+.++++... +.||++.|||.+.+++..++..|||++++||.++-
T Consensus 142 ~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~--~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 142 DLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG--NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 00 1123344444432 47999999999999999999999999999999986
Q ss_pred C
Q 022271 169 S 169 (300)
Q Consensus 169 t 169 (300)
.
T Consensus 220 ~ 220 (244)
T PRK13125 220 E 220 (244)
T ss_pred H
Confidence 4
No 94
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.42 E-value=6.6e-06 Score=71.38 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=82.2
Q ss_pred HHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec------------
Q 022271 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 53 ~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~------------ 116 (300)
+.++.+|+. ++.|+.+.+....+....++.+.+.|++++.++.-.+ ..++++.+++.|++++..
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~ 121 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK 121 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH
Confidence 467777765 6788888877776666668899999999999875322 246788888889888741
Q ss_pred ----------c------Ch------hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 ----------D------GL------ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 ----------~------~~------~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
. +. ...+.++++. .++||++.|||. .+.+.+++..|||+|.+||.+.-
T Consensus 122 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 122 LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL---LGVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh---cCCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhcC
Confidence 0 01 1122333322 279999999995 99999999999999999999753
No 95
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.42 E-value=9e-06 Score=69.57 Aligned_cols=135 Identities=21% Similarity=0.298 Sum_probs=85.4
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHH----
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEE---- 101 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~---- 101 (300)
+...+..++|.-.+.-.-.-.+.....+.++++++.+. +++++++.+. .++.+.+.|++.+.+........
T Consensus 16 ~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~-~~~~~l~~~~----~~~~a~~~g~~~vh~~~~~~~~~~~~~ 90 (196)
T cd00564 16 EVVEAALKGGVTLVQLREKDLSARELLELARALRELCR-KYGVPLIIND----RVDLALAVGADGVHLGQDDLPVAEARA 90 (196)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCeEEEeC----hHHHHHHcCCCEEecCcccCCHHHHHH
Confidence 44555566664332111111356667777888887764 6888888743 46677788888775543222211
Q ss_pred ----------------HHHHHHHCCCeEeec--------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHH
Q 022271 102 ----------------LVLEAHSAGVKVVPQ--------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 151 (300)
Q Consensus 102 ----------------~v~~~~~~G~~v~~~--------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~a 151 (300)
-+.+..+.|...+.. ...+..+.++++.. ++||++.|||. .+.+..
T Consensus 91 ~~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pv~a~GGi~-~~~i~~ 166 (196)
T cd00564 91 LLGPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV---EIPVVAIGGIT-PENAAE 166 (196)
T ss_pred HcCCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCCC-HHHHHH
Confidence 222333445554421 11235666666654 79999999995 789999
Q ss_pred HHHCCCcEEEeccccccC
Q 022271 152 ALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 152 al~lGAdgV~~GT~fl~t 169 (300)
++.+||++|.+||.++..
T Consensus 167 ~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 167 VLAAGADGVAVISAITGA 184 (196)
T ss_pred HHHcCCCEEEEehHhhcC
Confidence 999999999999998865
No 96
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.40 E-value=1.5e-06 Score=93.16 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-----CCCcHHHHHHHHHCCCeEeeccCh
Q 022271 46 EAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-----GEYSEELVLEAHSAGVKVVPQDGL 119 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-----G~~~~~~v~~~~~~G~~v~~~~~~ 119 (300)
.++|.|.+.|.++|+.+ ..|++|++.......+...-+.++++|+|.++. |.-|...+ +..| .+.
T Consensus 978 ySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~---~~~G------lP~ 1048 (1485)
T PRK11750 978 YSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSV---KYAG------SPW 1048 (1485)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHH---hhCC------ccH
Confidence 47888999999999886 569999998654333333356678999999874 22233333 3455 333
Q ss_pred hchHHHHHHhhC----CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccC
Q 022271 120 ISLLPMVVDLIG----DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 173 (300)
Q Consensus 120 ~~ll~~v~~~~~----~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~ 173 (300)
..-|+++.+.+. ..++.|+++||+.|++|+++|++||||.|.+||.+|.+..|.
T Consensus 1049 e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi 1106 (1485)
T PRK11750 1049 ELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCK 1106 (1485)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCH
Confidence 444556655542 136999999999999999999999999999999999998884
No 97
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.39 E-value=1.4e-05 Score=69.70 Aligned_cols=140 Identities=26% Similarity=0.321 Sum_probs=97.7
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCCCCCCHHHH-HHHHHHHHhhcCC-cEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAPDWEAPDYL-RDLIRKTRSLTER-PFGVGVVLAFPHNENIKAILSEKVAVLQVSWG 96 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~~~~~~~~l-~~~i~~~r~~~~~-P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G 96 (300)
|+++++-+..+.++| .+|++... .++..+ .++.+++++.... +..|.++.+....+..+.+.+.++++|-++..
T Consensus 5 Gi~~~ed~~~a~~~Gvd~ig~i~~~--~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 5 GITTLEDALAAAEAGADAIGFIFAP--KSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecCC--CCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 678888887777777 47887542 355555 5566666665543 46778888777677788888999999999855
Q ss_pred CCcHHHHHHHHH-CCCeEee---c-------------------------c------C---hhchHHHHHHhhCCCCCcEE
Q 022271 97 EYSEELVLEAHS-AGVKVVP---Q-------------------------D------G---LISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 97 ~~~~~~v~~~~~-~G~~v~~---~-------------------------~------~---~~~ll~~v~~~~~~~~iPVi 138 (300)
. +.+.++.+++ .|..++. . . + .+.+++++. . ++|++
T Consensus 83 e-~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~---~~Pvi 156 (203)
T cd00405 83 E-SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--S---RKPVI 156 (203)
T ss_pred C-CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--c---CCCEE
Confidence 4 4456666664 2433331 1 0 0 122333332 2 68999
Q ss_pred EccCCCChHHHHHHHHCC-CcEEEeccccccC
Q 022271 139 AAGGIVDARGYVAALSLG-AQGICLGTRFVAS 169 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t 169 (300)
++||| |++.+.+++..| ++||-+.|.+...
T Consensus 157 laGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 157 LAGGL-TPDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred EECCC-ChHHHHHHHHhcCCCEEEcCCcccCC
Confidence 99999 999999999999 9999999998755
No 98
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=6.4e-06 Score=76.44 Aligned_cols=123 Identities=23% Similarity=0.367 Sum_probs=95.2
Q ss_pred HhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHH
Q 022271 32 ANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVLEAHS 108 (300)
Q Consensus 32 s~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~ 108 (300)
+..|++|.+- +.+++-+.+.++++++.++.|+-+++-..... .+.++.+.+.|++.+.++ |+... .
T Consensus 113 a~~g~yGa~L---~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVH-GRtr~-------~ 181 (358)
T KOG2335|consen 113 AKRGGYGAFL---MDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVH-GRTRE-------Q 181 (358)
T ss_pred HhcCCcccee---ccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEe-cccHH-------h
Confidence 3456666543 46899999999999999999999998776543 467888889999999999 66321 1
Q ss_pred CCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccC
Q 022271 109 AGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVAS 169 (300)
Q Consensus 109 ~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t 169 (300)
.|.+.. .-.+..+..|++.+. ++|||+.|+|.+.+|+-.++. -||||||.|...|..
T Consensus 182 kg~~~~--pad~~~i~~v~~~~~--~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~N 239 (358)
T KOG2335|consen 182 KGLKTG--PADWEAIKAVRENVP--DIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYN 239 (358)
T ss_pred cCCCCC--CcCHHHHHHHHHhCc--CCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcC
Confidence 232221 346778888999883 499999999999999999999 899999999765543
No 99
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.38 E-value=5.2e-06 Score=73.83 Aligned_cols=137 Identities=19% Similarity=0.185 Sum_probs=79.1
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCceEEe-cCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecC---------------
Q 022271 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLL-RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA--------------- 73 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i-~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~--------------- 73 (300)
+.|++.++ |+.+.+=+..+.++|.-+++ +...+.+|+.+.+..++..+. ..++.+++...
T Consensus 74 ~~pv~~~g---gi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~ 149 (232)
T TIGR03572 74 FMPLTVGG---GIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDYKVYSDNGRR 149 (232)
T ss_pred CCCEEEEC---CCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcEEEEECCCcc
Confidence 45766533 56665555555566644443 322235666555555443211 01223322110
Q ss_pred ---CCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH
Q 022271 74 ---FPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 150 (300)
Q Consensus 74 ---~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~ 150 (300)
....+.++.+.+.|++.+.++ +..... ...| ..+.++.++++.+ ++||+++|||.+.+++.
T Consensus 150 ~~~~~~~~~~~~~~~~G~d~i~i~-~i~~~g-----~~~g-------~~~~~~~~i~~~~---~ipvia~GGi~s~~di~ 213 (232)
T TIGR03572 150 ATGRDPVEWAREAEQLGAGEILLN-SIDRDG-----TMKG-------YDLELIKTVSDAV---SIPVIALGGAGSLDDLV 213 (232)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEe-CCCccC-----CcCC-------CCHHHHHHHHhhC---CCCEEEECCCCCHHHHH
Confidence 011345556666666666555 221100 0111 2467888888876 79999999999999999
Q ss_pred H-HHHCCCcEEEecccc
Q 022271 151 A-ALSLGAQGICLGTRF 166 (300)
Q Consensus 151 a-al~lGAdgV~~GT~f 166 (300)
+ ....|||+|++||+|
T Consensus 214 ~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 214 EVALEAGASAVAAASLF 230 (232)
T ss_pred HHHHHcCCCEEEEehhh
Confidence 9 666999999999998
No 100
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.38 E-value=6.1e-06 Score=73.04 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=87.4
Q ss_pred HHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--cHHHHHHHHHCCCeEeec--------------
Q 022271 54 LIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 54 ~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~--~~~~v~~~~~~G~~v~~~-------------- 116 (300)
.++.+|+. ++.|+=|-|+...| +.+++...+.|++.|+++.-.. +..+++.+|+.|++....
T Consensus 48 ~i~~i~~~~~~~~~dvHLMv~~p-~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l 126 (220)
T PRK08883 48 ICKALRDYGITAPIDVHLMVKPV-DRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIM 126 (220)
T ss_pred HHHHHHHhCCCCCEEEEeccCCH-HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence 57778877 68999999998654 5688999999999999986421 457888899999887643
Q ss_pred ---------------------cChhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ---------------------DGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ---------------------~~~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
...+.-+.++++..++ .++||.+.|||. .+.+......|||++++||.+...
T Consensus 127 ~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~ 201 (220)
T PRK08883 127 DKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQ 201 (220)
T ss_pred HhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCC
Confidence 0123345556555421 248999999998 889999999999999999997643
No 101
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.37 E-value=6.9e-06 Score=74.44 Aligned_cols=48 Identities=33% Similarity=0.494 Sum_probs=44.6
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHH-HCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-SLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal-~lGAdgV~~GT~fl~t 169 (300)
.+.++.++++.+ ++|||++|||.+.+|+.+++ ..|++||.+|++|.+.
T Consensus 184 d~~~i~~~~~~~---~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 184 DLELLKSFRNAL---KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred CHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 567888888886 89999999999999999999 7999999999999998
No 102
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.35 E-value=1.4e-05 Score=70.88 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=44.0
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++||+++|||.+.+|+.+++..|||||++||.|+...
T Consensus 178 ~~~~i~~i~~~~---~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 178 NFELYKELAAAT---GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred CHHHHHHHHHhc---CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 467888888876 7999999999999999999999999999999997764
No 103
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.33 E-value=9.2e-06 Score=72.27 Aligned_cols=113 Identities=15% Similarity=0.262 Sum_probs=82.6
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC---C-CcHHHHHHHHHCCCeEeec------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG---E-YSEELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G---~-~~~~~v~~~~~~G~~v~~~------------ 116 (300)
+.++++|++++.|+.+-|+...| .+.++.+.+.|++.|+++.| . .+...++.+++.|..+...
T Consensus 55 ~~~~~l~~~~~~~~~vhlmv~~p-~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~ 133 (229)
T PLN02334 55 PVVKALRKHTDAPLDCHLMVTNP-EDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEP 133 (229)
T ss_pred HHHHHHHhcCCCcEEEEeccCCH-HHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCCCHHHHHH
Confidence 57888888899999999998754 45788889999999988887 2 1345566666666554322
Q ss_pred ---c----------------------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ---D----------------------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ---~----------------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
. ..+..+.++++.. .++||.+.||| +.+.+......|||++.+||.+...
T Consensus 134 ~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~--~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~ 208 (229)
T PLN02334 134 VVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY--PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGA 208 (229)
T ss_pred HHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC--CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCC
Confidence 0 0122334444432 25899999999 7899999999999999999997653
No 104
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.30 E-value=1e-05 Score=72.51 Aligned_cols=49 Identities=29% Similarity=0.449 Sum_probs=43.4
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t~ 170 (300)
.+.++.++.+.+ ++||+++|||.+.+++.+++.. |||+|++|++|..-.
T Consensus 181 ~~~~i~~i~~~~---~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 181 DLELIRAVSSAV---NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred CHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 467788888776 8999999999999999999997 999999999998753
No 105
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.28 E-value=1.1e-05 Score=71.67 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=44.0
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++|||++|||.|.+|+.+++..| |+||++|++|+...
T Consensus 178 d~~~i~~l~~~~---~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~~ 227 (233)
T PRK00748 178 NVEATRELAAAV---PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEGK 227 (233)
T ss_pred CHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcCC
Confidence 467888888876 79999999999999999999998 99999999997653
No 106
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.27 E-value=2.3e-05 Score=69.67 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=92.4
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCceEEecCCCC-CCHHHHHHHHHHHHhhcCCcEEeeeecCC---------------
Q 022271 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAF--------------- 74 (300)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~-~~~~~l~~~i~~~r~~~~~P~gvnl~~~~--------------- 74 (300)
|=....|=- ....+...+++++|.=.++-.|.. .+.+.+.+.++++|+ ++.|+-. +..+.
T Consensus 10 h~~liDP~k--~~~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~-~~lPvil-fp~~~~~i~~~aDa~l~~sv 85 (232)
T PRK04169 10 HVTLLDPDK--PLPDEALEAICESGTDAIIVGGSDGVTEENVDELVKAIKE-YDLPVIL-FPGNIEGISPGADAYLFPSV 85 (232)
T ss_pred EEEEECCCC--CCCHHHHHHHHhcCCCEEEEcCCCccchHHHHHHHHHHhc-CCCCEEE-eCCCccccCcCCCEEEEEEE
Confidence 334455654 333344478889887666644322 567889999999998 8888744 21110
Q ss_pred -----Cc------HHHHHHHHHcCCcEE-----EEcCC-----------CC--cHHHHHHH----HHCCCeEeec-----
Q 022271 75 -----PH------NENIKAILSEKVAVL-----QVSWG-----------EY--SEELVLEA----HSAGVKVVPQ----- 116 (300)
Q Consensus 75 -----~~------~~~~~~~~e~g~~~i-----~~~~G-----------~~--~~~~v~~~----~~~G~~v~~~----- 116 (300)
++ .+.+..+...+..++ .+.-| +| .++++... +-.|..++..
T Consensus 86 lNs~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle~gs~ 165 (232)
T PRK04169 86 LNSRNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIVYLEYGGG 165 (232)
T ss_pred ecCCCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 00 122233322233222 11111 11 12333222 1235444433
Q ss_pred ---cChhchHHHHHHhhCCCCC-cEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 117 ---DGLISLLPMVVDLIGDRDI-PIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 ---~~~~~ll~~v~~~~~~~~i-PViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.....++.++++.+ +. ||+..|||++.+++.+++..|||+|++||.|.-..+
T Consensus 166 ~g~~~~~e~I~~v~~~~---~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 166 AGDPVPPEMVKAVKKAL---DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred CCCCCCHHHHHHHHHhc---CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 11367888888876 67 999999999999999999999999999999985543
No 107
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.25 E-value=1.3e-05 Score=69.68 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=79.1
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--cHHHHHHHHHCCCeEeec--------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~--~~~~v~~~~~~G~~v~~~-------------- 116 (300)
+.++++|+.++.|+.+.++...+ .+.++.+.+.|++.|.++.+.. +.+.++.+++.|+.++..
T Consensus 47 ~~~~~i~~~~~~~~~v~l~~~d~-~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 125 (211)
T cd00429 47 PVVKALRKHTDLPLDVHLMVENP-ERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYL 125 (211)
T ss_pred HHHHHHHhhCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHH
Confidence 46777777666788888888754 4568888899999998875421 234455555666654322
Q ss_pred ------------cC---------hhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ------------DG---------LISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ------------~~---------~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+ .+..+.++++... ..++||+++|||.. +.+..++..|||+|.+||.+...
T Consensus 126 ~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~ 200 (211)
T cd00429 126 DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCC
Confidence 01 1123444444431 01389999999996 99999999999999999999854
No 108
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.25 E-value=6.2e-05 Score=65.76 Aligned_cols=134 Identities=21% Similarity=0.235 Sum_probs=89.9
Q ss_pred HHHHHHHhCCceEEecCCCC-CCHHHHHHHHHHHHhhcCCcEEeeeecCC--------------------Cc---HHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAF--------------------PH---NENIK 81 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~-~~~~~l~~~i~~~r~~~~~P~gvnl~~~~--------------------~~---~~~~~ 81 (300)
+++..++++|.=+++-.+.. .+.+.+.+.++.+|+.+++|+-+ +..+. ++ ..+.+
T Consensus 15 ~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvil-fp~~~~~i~~~aD~~~~~sllns~~~~~i~g~~~~ 93 (205)
T TIGR01769 15 KIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVIL-FPGNVNGLSRYADAVFFMSLLNSADTYFIVGAQIL 93 (205)
T ss_pred HHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEE-ECCCccccCcCCCEEEEEEeecCCCcchhhhHHHH
Confidence 46678889887666643322 58899999999999988999865 11110 10 22333
Q ss_pred HH---HHcCCcEEE-----EcCC--------------CCcH---HHHHHHHHCCCeEeec--------cChhchHHHHHH
Q 022271 82 AI---LSEKVAVLQ-----VSWG--------------EYSE---ELVLEAHSAGVKVVPQ--------DGLISLLPMVVD 128 (300)
Q Consensus 82 ~~---~e~g~~~i~-----~~~G--------------~~~~---~~v~~~~~~G~~v~~~--------~~~~~ll~~v~~ 128 (300)
.+ .+.+..++. ++-| .+++ .+...++..|.++++. .....++.++++
T Consensus 94 ~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~ 173 (205)
T TIGR01769 94 GAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKK 173 (205)
T ss_pred HHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHH
Confidence 33 555544332 2111 1222 2333445678888775 124567888888
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+ ++|++..|||+|.+++.+++..|||+|++|
T Consensus 174 ~~---~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 174 AS---GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred hh---CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 77 799999999999999999999999999987
No 109
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.24 E-value=1.2e-05 Score=72.56 Aligned_cols=49 Identities=29% Similarity=0.453 Sum_probs=43.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++|||++|||.+.+|+.+++.. ||++|++||+|....
T Consensus 185 d~~~i~~~~~~~---~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~ 234 (253)
T PRK02083 185 DLELTRAVSDAV---NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGE 234 (253)
T ss_pred CHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCC
Confidence 467888888876 7999999999999999999975 999999999998763
No 110
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.24 E-value=4.5e-05 Score=66.45 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=90.8
Q ss_pred HHHHHHHhCCceEEecCC-CCCCHHHHHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---H
Q 022271 26 ELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS---E 100 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~-~~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~ 100 (300)
+++.++ .+++-.+=.+ .+.++.. -+.|+.+|+. ++.++.+.+....+....++.+.+.|+++|++++-.++ .
T Consensus 16 ~~~~~l--~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~ 92 (206)
T TIGR03128 16 ELAEKV--ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDATIK 92 (206)
T ss_pred HHHHHc--ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHHHHH
Confidence 566665 3567666432 0111221 3466677665 45567777655455455689999999999998865432 5
Q ss_pred HHHHHHHHCCCeEeec------------------------c-C---------hhchHHHHHHhhCCCCCcEEEccCCCCh
Q 022271 101 ELVLEAHSAGVKVVPQ------------------------D-G---------LISLLPMVVDLIGDRDIPIIAAGGIVDA 146 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~------------------------~-~---------~~~ll~~v~~~~~~~~iPViaaGGI~~g 146 (300)
++++.+++.|+.++.. . + .+..+.++++.+. .+++.+.||| +.
T Consensus 93 ~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~--~~~i~v~GGI-~~ 169 (206)
T TIGR03128 93 GAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVK--EARVAVAGGI-NL 169 (206)
T ss_pred HHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcC--CCcEEEECCc-CH
Confidence 7788888899888642 0 0 1112344444442 4667679999 88
Q ss_pred HHHHHHHHCCCcEEEeccccccC
Q 022271 147 RGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 147 ~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+.+..++..||+++.+||.+...
T Consensus 170 ~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 170 DTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred HHHHHHHHcCCCEEEEeehhcCC
Confidence 89999999999999999997654
No 111
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.22 E-value=1.4e-05 Score=71.76 Aligned_cols=49 Identities=29% Similarity=0.463 Sum_probs=43.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH---CCCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS---LGAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~---lGAdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++|||++|||.+.+|+.+++. .|||||++|++++...
T Consensus 178 d~~~i~~i~~~~---~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~ 229 (241)
T PRK14024 178 NLELLREVCART---DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGA 229 (241)
T ss_pred CHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCC
Confidence 577888888876 799999999999999999875 4999999999998764
No 112
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.22 E-value=5.7e-05 Score=66.49 Aligned_cols=133 Identities=15% Similarity=0.229 Sum_probs=94.0
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc----CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT----ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEE 101 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~----~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~ 101 (300)
+++.++.+ ||+.++-- .+.+|+.+ +.|+++++.. +..+|++-+. +.++++.+++.|++++..- +. .++
T Consensus 29 ~~~~al~~-~Gi~~iEi-t~~~~~a~-~~i~~l~~~~~~~p~~~vGaGTV~---~~~~~~~a~~aGA~FivsP-~~-~~~ 100 (213)
T PRK06552 29 KISLAVIK-GGIKAIEV-TYTNPFAS-EVIKELVELYKDDPEVLIGAGTVL---DAVTARLAILAGAQFIVSP-SF-NRE 100 (213)
T ss_pred HHHHHHHH-CCCCEEEE-ECCCccHH-HHHHHHHHHcCCCCCeEEeeeeCC---CHHHHHHHHHcCCCEEECC-CC-CHH
Confidence 55555444 66887744 24556544 5677776643 2347776664 5788999999999999865 33 467
Q ss_pred HHHHHHHCCCeEeec--------------------c--C--hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCC
Q 022271 102 LVLEAHSAGVKVVPQ--------------------D--G--LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 102 ~v~~~~~~G~~v~~~--------------------~--~--~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
+++.+++.|+.+++. . . ....+..++..+ .++|+++.|||. .+.+..++..||
T Consensus 101 v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~~~--p~ip~~atGGI~-~~N~~~~l~aGa 177 (213)
T PRK06552 101 TAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIKGPL--PQVNVMVTGGVN-LDNVKDWFAAGA 177 (213)
T ss_pred HHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHhhhC--CCCEEEEECCCC-HHHHHHHHHCCC
Confidence 888888888888764 0 0 123455555444 259999999996 789999999999
Q ss_pred cEEEeccccccC
Q 022271 158 QGICLGTRFVAS 169 (300)
Q Consensus 158 dgV~~GT~fl~t 169 (300)
+++.+|+.+...
T Consensus 178 ~~vavgs~l~~~ 189 (213)
T PRK06552 178 DAVGIGGELNKL 189 (213)
T ss_pred cEEEEchHHhCc
Confidence 999999999654
No 113
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.20 E-value=4e-05 Score=67.44 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecC--C----Cc----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEee
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLA--F----PH----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP 115 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~--~----~~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~ 115 (300)
.+.++--..-+-.|++.+.++ |+|=.. . |+ .+..+.+++.|-.+.-.-. +..-+.+++.+.|+..+=
T Consensus 73 ~tA~EAv~~A~laRe~~~t~w-IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~--~D~v~akrL~d~GcaavM 149 (247)
T PF05690_consen 73 RTAEEAVRTARLAREAFGTNW-IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCT--DDPVLAKRLEDAGCAAVM 149 (247)
T ss_dssp SSHHHHHHHHHHHHHTTS-SE-EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE---S-HHHHHHHHHTT-SEBE
T ss_pred CCHHHHHHHHHHHHHHcCCCe-EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCC--CCHHHHHHHHHCCCCEEE
Confidence 455554444555577766554 555332 1 22 3456777788887776542 344567888899987652
Q ss_pred c----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccC-CCHHHHHHHHc
Q 022271 116 Q----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLVE 184 (300)
Q Consensus 116 ~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~-~~~~~k~~i~~ 184 (300)
- ......+..+++.. ++|||..+||+++.|++.++.+|||+|.+-|+...+..-. -..++|.++..
T Consensus 150 PlgsPIGSg~Gi~n~~~l~~i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 150 PLGSPIGSGRGIQNPYNLRIIIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp EBSSSTTT---SSTHHHHHHHHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred ecccccccCcCCCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHH
Confidence 2 12445778888887 8999999999999999999999999999999986654321 12446665554
No 114
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.19 E-value=3e-05 Score=70.07 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=85.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCceEEe-cCCCCCCHHHHHHHHHHHHhhcCC-cEEeee---------------ec
Q 022271 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLL-RAPDWEAPDYLRDLIRKTRSLTER-PFGVGV---------------VL 72 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i-~~~~~~~~~~l~~~i~~~r~~~~~-P~gvnl---------------~~ 72 (300)
+.||+.++ |+.+.+-+.....+|.-+++ +..-..+|+.+.+..++.-+ ++ -+.+++ -.
T Consensus 74 ~~pv~~~G---Gi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~--~~iv~slD~~~g~~~~~~~~~v~i~g 148 (254)
T TIGR00735 74 FIPLTVGG---GIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGS--QCIVVAIDAKRVYVNSYCWYEVYIYG 148 (254)
T ss_pred CCCEEEEC---CCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCC--CCEEEEEEeccCCCCCCccEEEEEeC
Confidence 45766532 67777666666667765544 32223466666555444410 11 112211 11
Q ss_pred CC-----CcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChH
Q 022271 73 AF-----PHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 147 (300)
Q Consensus 73 ~~-----~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~ 147 (300)
+. ...+.++.+.+.|++.|.++ +... ..... -..+.++.++++.+ ++|||++|||.+.+
T Consensus 149 w~~~~~~~~~~~~~~l~~~G~~~iivt-~i~~-----~g~~~-------g~~~~~~~~i~~~~---~ipvia~GGi~s~~ 212 (254)
T TIGR00735 149 GRESTGLDAVEWAKEVEKLGAGEILLT-SMDK-----DGTKS-------GYDLELTKAVSEAV---KIPVIASGGAGKPE 212 (254)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEEe-CcCc-----ccCCC-------CCCHHHHHHHHHhC---CCCEEEeCCCCCHH
Confidence 11 11345566667777776665 2211 00001 12467888888886 79999999999999
Q ss_pred HHHHHHHCC-CcEEEeccccccCc
Q 022271 148 GYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 148 ~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
++.+++..| +|||++||+|....
T Consensus 213 di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 213 HFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcCCcceeeEhHHHhCCC
Confidence 999999998 99999999987653
No 115
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.16 E-value=6.6e-05 Score=67.07 Aligned_cols=49 Identities=29% Similarity=0.486 Sum_probs=44.2
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
+.++.++++.+ ++||+++|||.+.+++.+++.+||++|++||+++....
T Consensus 182 ~~~i~~i~~~~---~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~ 230 (241)
T PRK13585 182 TEPVKELVDSV---DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKF 230 (241)
T ss_pred HHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCc
Confidence 56788888876 79999999999999999999999999999999988765
No 116
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.15 E-value=3.4e-05 Score=67.18 Aligned_cols=143 Identities=18% Similarity=0.215 Sum_probs=89.0
Q ss_pred HHHHHHHHhCC--ceEEe-cCCCC-CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--
Q 022271 25 PELVAAVANAG--GLGLL-RAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY-- 98 (300)
Q Consensus 25 ~~la~avs~aG--glG~i-~~~~~-~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~-- 98 (300)
.+.+.++.++| .+++. ..+.+ .+...-.+.++++|+.++.|+-+.++...+ .+.++.+.+.|++.|.++.+.+
T Consensus 14 ~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~-~~~~~~~~~~gadgv~vh~~~~~~ 92 (210)
T TIGR01163 14 GEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENP-DRYIEDFAEAGADIITVHPEASEH 92 (210)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEEccCCchh
Confidence 35666677766 45553 11111 111223356777777666777677777643 5678888899999998885421
Q ss_pred cHHHHHHHHHCCCeEeec-----------------------------cC------hhchHHHHHHhhCC--CCCcEEEcc
Q 022271 99 SEELVLEAHSAGVKVVPQ-----------------------------DG------LISLLPMVVDLIGD--RDIPIIAAG 141 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-----------------------------~~------~~~ll~~v~~~~~~--~~iPViaaG 141 (300)
+...++.+++.|..++.. .+ .+..+.++++.++. .++|++++|
T Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~G 172 (210)
T TIGR01163 93 IHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDG 172 (210)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 124445555666553321 00 11233444444321 137999999
Q ss_pred CCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 142 GIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 142 GI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
||. .+.+.+++..|||++.+||.+..+
T Consensus 173 GI~-~env~~l~~~gad~iivgsai~~~ 199 (210)
T TIGR01163 173 GVN-DDNARELAEAGADILVAGSAIFGA 199 (210)
T ss_pred CcC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence 995 699999999999999999999854
No 117
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.14 E-value=1.7e-05 Score=73.99 Aligned_cols=114 Identities=26% Similarity=0.348 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCCC-----c----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccC
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAFP-----H----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDG 118 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~~-----~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~ 118 (300)
.+.+.++++|+.. +.|+++.+-.... . .+.++.+.+.|++.|.++.|........ . .. ... ....
T Consensus 193 ~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~-~-~~-~~~-~~~~ 268 (327)
T cd02803 193 FLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPI-I-PP-PYV-PEGY 268 (327)
T ss_pred HHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccc-c-CC-CCC-Ccch
Confidence 4567788888876 5689998775421 1 3457788889999999987653211100 0 00 000 0012
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++||++.|||.+.+++.+++.. |||.|++|+.|+..+
T Consensus 269 ~~~~~~~ir~~~---~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP 318 (327)
T cd02803 269 FLELAEKIKKAV---KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADP 318 (327)
T ss_pred hHHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCc
Confidence 356677788877 7999999999999999999998 899999999999865
No 118
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.11 E-value=0.00012 Score=65.18 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec--------cC--hhchHHHHHHhhCCCCCcEEEccCCCChH
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ--------DG--LISLLPMVVDLIGDRDIPIIAAGGIVDAR 147 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~--------~~--~~~ll~~v~~~~~~~~iPViaaGGI~~g~ 147 (300)
+..+.+++.|..+.-... +..-+.+++.+.|+..+=- .| .-..+..+++.. ++|||..+||+++.
T Consensus 128 ~Aae~Lv~eGF~VlPY~~--~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~---~vpVivdAGIgt~s 202 (267)
T CHL00162 128 KAAEFLVKKGFTVLPYIN--ADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENA---KIPVIIDAGIGTPS 202 (267)
T ss_pred HHHHHHHHCCCEEeecCC--CCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcC---CCcEEEeCCcCCHH
Confidence 456777788877765542 3445678888999876521 12 344666677665 79999999999999
Q ss_pred HHHHHHHCCCcEEEeccccccCc
Q 022271 148 GYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 148 ~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
|++.++.+|||||.+.|+..-+.
T Consensus 203 Da~~AmElGaDgVL~nSaIakA~ 225 (267)
T CHL00162 203 EASQAMELGASGVLLNTAVAQAK 225 (267)
T ss_pred HHHHHHHcCCCEEeecceeecCC
Confidence 99999999999999999998543
No 119
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.09 E-value=6.9e-05 Score=66.47 Aligned_cols=48 Identities=27% Similarity=0.545 Sum_probs=43.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t 169 (300)
.+.++.++.+.+ ++||+++|||++-.|+.++..+ |.+||.+|+++..-
T Consensus 179 n~~l~~~l~~~~---~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g 227 (241)
T COG0106 179 NVDLVKELAEAV---DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEG 227 (241)
T ss_pred CHHHHHHHHHHh---CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcC
Confidence 456888898888 8999999999999999999999 99999999998754
No 120
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.08 E-value=0.00016 Score=62.47 Aligned_cols=131 Identities=19% Similarity=0.281 Sum_probs=87.7
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcC-CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~-~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~ 104 (300)
+++.++.++| +..+-.. ..++.. .+.++++++... ..+|...+. +.+.++.+++.|++++... +. ..++++
T Consensus 20 ~~~~~l~~~G-~~~vev~-~~~~~~-~~~i~~l~~~~~~~~iGag~v~---~~~~~~~a~~~Ga~~i~~p-~~-~~~~~~ 91 (190)
T cd00452 20 ALAEALIEGG-IRAIEIT-LRTPGA-LEAIRALRKEFPEALIGAGTVL---TPEQADAAIAAGAQFIVSP-GL-DPEVVK 91 (190)
T ss_pred HHHHHHHHCC-CCEEEEe-CCChhH-HHHHHHHHHHCCCCEEEEEeCC---CHHHHHHHHHcCCCEEEcC-CC-CHHHHH
Confidence 5666656544 6666432 344543 347888877653 556766553 4678899999999988654 22 356666
Q ss_pred HHHHCCCeEeec--------------------cC----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 105 EAHSAGVKVVPQ--------------------DG----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 105 ~~~~~G~~v~~~--------------------~~----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
..++.|..++.. .+ ...++..++..+ .++|+++.||| +.+.+..++..|+++|
T Consensus 92 ~~~~~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~--~~~p~~a~GGI-~~~n~~~~~~~G~~~v 168 (190)
T cd00452 92 AANRAGIPLLPGVATPTEIMQALELGADIVKLFPAEAVGPAYIKALKGPF--PQVRFMPTGGV-SLDNAAEWLAAGVVAV 168 (190)
T ss_pred HHHHcCCcEECCcCCHHHHHHHHHCCCCEEEEcCCcccCHHHHHHHHhhC--CCCeEEEeCCC-CHHHHHHHHHCCCEEE
Confidence 666666665543 11 123344443333 25999999999 9999999999999999
Q ss_pred Eeccccc
Q 022271 161 CLGTRFV 167 (300)
Q Consensus 161 ~~GT~fl 167 (300)
.+|+.+.
T Consensus 169 ~v~s~i~ 175 (190)
T cd00452 169 GGGSLLP 175 (190)
T ss_pred EEchhcc
Confidence 9999887
No 121
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.05 E-value=0.00016 Score=63.37 Aligned_cols=134 Identities=22% Similarity=0.337 Sum_probs=89.4
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcC--CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~--~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
+++.++.+ ||+.++--. +.+++.+ +.|+++++... ..+|++-+. ..++++.+++.|++++.... ...+++
T Consensus 26 ~~~~a~~~-gGi~~iEvt-~~~~~~~-~~i~~l~~~~~~~~~iGaGTV~---~~~~~~~a~~aGA~fivsp~--~~~~v~ 97 (206)
T PRK09140 26 AHVGALIE-AGFRAIEIP-LNSPDPF-DSIAALVKALGDRALIGAGTVL---SPEQVDRLADAGGRLIVTPN--TDPEVI 97 (206)
T ss_pred HHHHHHHH-CCCCEEEEe-CCCccHH-HHHHHHHHHcCCCcEEeEEecC---CHHHHHHHHHcCCCEEECCC--CCHHHH
Confidence 55555444 668877432 3455444 46777765443 356766654 57889999999999987742 234566
Q ss_pred HHHHHCCCeEeec--------------------cC----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 104 LEAHSAGVKVVPQ--------------------DG----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 104 ~~~~~~G~~v~~~--------------------~~----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
+..+..|..++.. .+ -...+.++++.+. .++|+++.||| +.+.+..++..||++
T Consensus 98 ~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~-~~ipvvaiGGI-~~~n~~~~~~aGa~~ 175 (206)
T PRK09140 98 RRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIKALRAVLP-PDVPVFAVGGV-TPENLAPYLAAGAAG 175 (206)
T ss_pred HHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcC-CCCeEEEECCC-CHHHHHHHHHCCCeE
Confidence 6666666555432 11 1234555554441 14999999999 889999999999999
Q ss_pred EEeccccccC
Q 022271 160 ICLGTRFVAS 169 (300)
Q Consensus 160 V~~GT~fl~t 169 (300)
|.+||.+...
T Consensus 176 vav~s~l~~~ 185 (206)
T PRK09140 176 FGLGSALYRP 185 (206)
T ss_pred EEEehHhccc
Confidence 9999999763
No 122
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.05 E-value=6.6e-05 Score=65.78 Aligned_cols=62 Identities=26% Similarity=0.439 Sum_probs=50.0
Q ss_pred hhchHHHHHHhhCCCCCcE--EEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCC
Q 022271 119 LISLLPMVVDLIGDRDIPI--IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMD 186 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPV--iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~ 186 (300)
.+.|+.++.+.- ++|| ++||||.|+.|.+-++.||||||.+||...-+. -++.+-++|+++.
T Consensus 194 p~elv~~~~~~g---rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~---~P~~~A~AIV~A~ 257 (296)
T COG0214 194 PYELVKEVAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS---NPEKRAKAIVEAT 257 (296)
T ss_pred hHHHHHHHHHhC---CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCC---CHHHHHHHHHHHH
Confidence 356677766643 4555 799999999999999999999999999988764 5788888999863
No 123
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.00018 Score=62.98 Aligned_cols=147 Identities=21% Similarity=0.318 Sum_probs=100.3
Q ss_pred HHHHHHHHhCCceEEecC----CCC-----CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 25 PELVAAVANAGGLGLLRA----PDW-----EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~----~~~-----~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
.+-+.++.++| ...+.. ++| ..| ..++++|+.|+.|+-|-||...| ..+++...++|++.|+++.
T Consensus 19 ~~el~~~~~ag-ad~iH~DVMDghFVPNiTfGp----~~v~~l~~~t~~p~DvHLMV~~p-~~~i~~fa~agad~It~H~ 92 (220)
T COG0036 19 GEELKALEAAG-ADLIHIDVMDGHFVPNITFGP----PVVKALRKITDLPLDVHLMVENP-DRYIEAFAKAGADIITFHA 92 (220)
T ss_pred HHHHHHHHHcC-CCEEEEeccCCCcCCCcccCH----HHHHHHhhcCCCceEEEEecCCH-HHHHHHHHHhCCCEEEEEe
Confidence 35566677777 444432 111 123 35777888899999999999765 6789999999999999986
Q ss_pred CC--CcHHHHHHHHHCCCeEeec----------------------------cC-------hhchHHHHHHhhCCC-CCcE
Q 022271 96 GE--YSEELVLEAHSAGVKVVPQ----------------------------DG-------LISLLPMVVDLIGDR-DIPI 137 (300)
Q Consensus 96 G~--~~~~~v~~~~~~G~~v~~~----------------------------~~-------~~~ll~~v~~~~~~~-~iPV 137 (300)
-. -....++.+|+.|++.... .+ .+.=+.++++...+. ++-+
T Consensus 93 E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~I 172 (220)
T COG0036 93 EATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILI 172 (220)
T ss_pred ccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEE
Confidence 32 2468899999999887643 01 222333444443211 4568
Q ss_pred EEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 138 IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 138 iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
-+.||| +.+.+..+.++|||-+++|| +++.... |++.+..
T Consensus 173 eVDGGI-~~~t~~~~~~AGad~~VaGS-alF~~~d-----~~~~i~~ 212 (220)
T COG0036 173 EVDGGI-NLETIKQLAAAGADVFVAGS-ALFGADD-----YKATIRE 212 (220)
T ss_pred EEeCCc-CHHHHHHHHHcCCCEEEEEE-EEeCCcc-----HHHHHHH
Confidence 899999 56688888899999999999 5554321 6666554
No 124
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.01 E-value=0.00037 Score=62.30 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=51.4
Q ss_pred cHHHHHHHHHCCCe-Eeec----cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVK-VVPQ----DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~-v~~~----~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+.++++++.+.|+. ++.+ +| .+.++.++.+.. ++||+++|||++.+|+.+++.+|+++|.+||+|.-
T Consensus 150 ~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~---~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 150 LFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT---TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 35666666665532 2222 22 367788888775 79999999999999999999999999999999863
No 125
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.99 E-value=8e-05 Score=65.98 Aligned_cols=115 Identities=20% Similarity=0.229 Sum_probs=72.4
Q ss_pred HHHHHhhcCCcEEeeeecCC-----CcHHHHHHHHHcCCcEEEEcCC---CCc---HHHHHHHHHCCCeEeec-------
Q 022271 55 IRKTRSLTERPFGVGVVLAF-----PHNENIKAILSEKVAVLQVSWG---EYS---EELVLEAHSAGVKVVPQ------- 116 (300)
Q Consensus 55 i~~~r~~~~~P~gvnl~~~~-----~~~~~~~~~~e~g~~~i~~~~G---~~~---~~~v~~~~~~G~~v~~~------- 116 (300)
|..+++.++.|++..-+... ..+..++.+.+.|++.|.+... .+. .+.+..+++.|+.++..
T Consensus 48 l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~~~~~ 127 (223)
T PRK04302 48 IRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNNPETS 127 (223)
T ss_pred HHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 44555545667765333221 1244578888888888876531 111 24555566677765532
Q ss_pred -------------cC-----h--------hchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 -------------DG-----L--------ISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 -------------~~-----~--------~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.+ + -..+.++.+.++. .++||++.|||.+.+++..++..|||||.+||+++-
T Consensus 128 ~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 128 AAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred HHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhC
Confidence 00 0 1112232222321 269999999999999999999999999999999996
Q ss_pred C
Q 022271 169 S 169 (300)
Q Consensus 169 t 169 (300)
+
T Consensus 208 ~ 208 (223)
T PRK04302 208 A 208 (223)
T ss_pred C
Confidence 5
No 126
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=97.98 E-value=2.5e-05 Score=73.45 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCC------Cc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAF------PH---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~------~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
-+.+.|+.+|+..+.|+++.+-... .. .+.++.+.+.|++.|.++.|.....-. . ... -...
T Consensus 194 f~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~-----~---~~~-~~~~ 264 (337)
T PRK13523 194 FLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARI-----D---VYP-GYQV 264 (337)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC-----C---CCc-cccH
Confidence 4556788888877889998887532 11 245567777899999999875311000 0 000 0134
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.+..++++.+ ++||++.|+|.|++++.++|.-| ||.|.+|+.+++-++
T Consensus 265 ~~~~~ik~~~---~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~ 313 (337)
T PRK13523 265 PFAEHIREHA---NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPY 313 (337)
T ss_pred HHHHHHHhhc---CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCcc
Confidence 5667788776 79999999999999999999987 999999999998765
No 127
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.97 E-value=0.00027 Score=62.41 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=87.6
Q ss_pred cHHHHHHHHhCCceEEecCCCC-CCHHHHHHHHHHHHhhcCCcEEeeeecCC--------------------Cc------
Q 022271 24 GPELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAF--------------------PH------ 76 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~~-~~~~~l~~~i~~~r~~~~~P~gvnl~~~~--------------------~~------ 76 (300)
..+.+.++++.|.=.++-.|.. .+.+.+.+.++++|+.+ .|+-+ +..+. ++
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~-lPvil-fp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~ 93 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYG-LPIIL-FPSNPTNVSRDADALFFPSVLNSDDPYWIIGAQ 93 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccC-CCEEE-eCCCccccCcCCCEEEEEEeecCCCchHHHhHH
Confidence 4578889999987676644322 57789999999999754 77754 11110 00
Q ss_pred HHHHHHHHHcCCcEE-----EEcCCC-----------C--cHHHHHHH----HHCCCeEeecc-----C---hhchHHHH
Q 022271 77 NENIKAILSEKVAVL-----QVSWGE-----------Y--SEELVLEA----HSAGVKVVPQD-----G---LISLLPMV 126 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i-----~~~~G~-----------~--~~~~v~~~----~~~G~~v~~~~-----~---~~~ll~~v 126 (300)
.+.+..+.+.+..++ .+.-|. | .++++... +--|.+++..+ + ...++.++
T Consensus 94 ~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~v 173 (223)
T TIGR01768 94 IEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAEV 173 (223)
T ss_pred HHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHHH
Confidence 122333333333222 122111 0 12222211 11365655431 1 25677777
Q ss_pred HHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 127 VDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 127 ~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++.+. ++||+..|||+|.+++..++.+|||+|++||.+.-.
T Consensus 174 ~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 174 KKVLD--KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred HHHcC--CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 77653 699999999999999999999999999999998754
No 128
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.96 E-value=4.8e-05 Score=71.50 Aligned_cols=112 Identities=23% Similarity=0.268 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhhc--CCcEEeeeecCC------Cc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc
Q 022271 49 DYLRDLIRKTRSLT--ERPFGVGVVLAF------PH---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD 117 (300)
Q Consensus 49 ~~l~~~i~~~r~~~--~~P~gvnl~~~~------~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~ 117 (300)
..+.+.++.+|+.. +.|+++.+-... .. .+.++.+.+.+++.|.++.|....... ..+ ...
T Consensus 205 rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~-------~~~-~~~ 276 (336)
T cd02932 205 RFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQK-------IPV-GPG 276 (336)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccc-------cCC-Ccc
Confidence 45677888899876 678888876421 11 244566777899999988764321100 000 001
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
-...+..++++.+ ++||++.|||.+++++.+++..| ||.|++|+.+++-++
T Consensus 277 ~~~~~~~~ir~~~---~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~ 328 (336)
T cd02932 277 YQVPFAERIRQEA---GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPY 328 (336)
T ss_pred ccHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCcc
Confidence 1245667788877 79999999999999999999998 999999999998764
No 129
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.93 E-value=0.00033 Score=60.47 Aligned_cols=134 Identities=21% Similarity=0.287 Sum_probs=79.6
Q ss_pred HHHHHHHhCCceEEec--CCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcH---
Q 022271 26 ELVAAVANAGGLGLLR--APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE--- 100 (300)
Q Consensus 26 ~la~avs~aGglG~i~--~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~--- 100 (300)
+......++| ...+- .. ..+..++.+.+++++...+ ++++.++.+. ..+.+.+.+++.|.+..+..+.
T Consensus 17 ~~~~~~~~~g-~~~v~lR~~-~~~~~~~~~~~~~l~~~~~-~~~~~l~i~~----~~~la~~~g~~GvHl~~~~~~~~~~ 89 (196)
T TIGR00693 17 NRVEAALKGG-VTLVQLRDK-GSNTRERLALAEKLQELCR-RYGVPFIVND----RVDLALALGADGVHLGQDDLPASEA 89 (196)
T ss_pred HHHHHHHhcC-CCEEEEecC-CCCHHHHHHHHHHHHHHHH-HhCCeEEEEC----HHHHHHHcCCCEEecCcccCCHHHH
Confidence 4444555666 44432 21 1356666677777766532 2344444432 3556666666666554332111
Q ss_pred -----------------HHHHHHHHCCCeEeec---------c---C--hhchHHHHHHhhCCCCCcEEEccCCCChHHH
Q 022271 101 -----------------ELVLEAHSAGVKVVPQ---------D---G--LISLLPMVVDLIGDRDIPIIAAGGIVDARGY 149 (300)
Q Consensus 101 -----------------~~v~~~~~~G~~v~~~---------~---~--~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v 149 (300)
+-+.+..+.|...+.. . + .+..+.++++... ++||++.||| +.+.+
T Consensus 90 r~~~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~--~~pv~a~GGI-~~~~~ 166 (196)
T TIGR00693 90 RALLGPDKIIGVSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI--DIPIVAIGGI-TLENA 166 (196)
T ss_pred HHhcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHH
Confidence 1122344456665431 0 1 2456666665542 5999999999 68999
Q ss_pred HHHHHCCCcEEEeccccccC
Q 022271 150 VAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 150 ~aal~lGAdgV~~GT~fl~t 169 (300)
..++.+|++||.+|+.++.+
T Consensus 167 ~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 167 AEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred HHHHHcCCCEEEEhHHhhCC
Confidence 99999999999999999865
No 130
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.92 E-value=3.3e-05 Score=68.42 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=52.6
Q ss_pred cHHHHHHHHHCCCeEeec----c-----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ----D-----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~----~-----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+.++.+.+.+.|..++.+ + ..+.++.++.+.+ ++|||++|||++.+|+.+++.+||++|.+||+|..
T Consensus 143 ~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~---~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 143 LEEVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKTLELS---EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHHHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 345666666666544433 2 2577889998886 79999999999999999999999999999999854
No 131
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.90 E-value=0.00039 Score=62.05 Aligned_cols=69 Identities=26% Similarity=0.304 Sum_probs=52.1
Q ss_pred cHHHHHHHHHC-CCeEeec---c-----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 99 SEELVLEAHSA-GVKVVPQ---D-----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 99 ~~~~v~~~~~~-G~~v~~~---~-----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+.++++++.+. +-.++.+ . ..+.++.++.+.+ ++||+++|||++.+|+.+++.+|+++|.+||++...
T Consensus 148 ~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~---~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 148 PEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA---DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred HHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 45666666554 2222222 1 2456778888776 799999999999999999999999999999998765
Q ss_pred c
Q 022271 170 E 170 (300)
Q Consensus 170 ~ 170 (300)
.
T Consensus 225 ~ 225 (233)
T cd04723 225 G 225 (233)
T ss_pred C
Confidence 3
No 132
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.88 E-value=0.00022 Score=62.62 Aligned_cols=117 Identities=20% Similarity=0.295 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--cHHHHHHHHHCCCeEeec-------------
Q 022271 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 52 ~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~--~~~~v~~~~~~G~~v~~~------------- 116 (300)
.+.++++++.++.|+.+.++...+ .++++.+.+.|++.|.++.+.+ +...++.+++.|..++..
T Consensus 50 ~~~~~~i~~~~~~~~~v~l~v~d~-~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~ 128 (220)
T PRK05581 50 PPVVEAIRKVTKLPLDVHLMVENP-DRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDV 128 (220)
T ss_pred HHHHHHHHhcCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHH
Confidence 456777777665788888888754 4466777899999998886532 124455556666664322
Q ss_pred -------------cC---------hhchHHHHHHhhCCC--CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 -------------DG---------LISLLPMVVDLIGDR--DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 -------------~~---------~~~ll~~v~~~~~~~--~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+ .+..+.++++..... +++|.++|||.. +.+..++..|+|+|.+||.++-.+
T Consensus 129 ~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~ 205 (220)
T PRK05581 129 LDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAP 205 (220)
T ss_pred HhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCC
Confidence 00 112333343333111 134678999988 799999999999999999998644
No 133
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.88 E-value=0.00025 Score=63.09 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=84.6
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC-C--CcHHHHHHHHHCCCeEeec--------------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-E--YSEELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G-~--~~~~~v~~~~~~G~~v~~~-------------- 116 (300)
.++.+|+.++.|+=|-|+...| ..+++.+.+.|++.|+++.- + .+..+++.+|+.|++....
T Consensus 50 ~i~~ir~~t~~~~DvHLMv~~P-~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l 128 (229)
T PRK09722 50 FVSQVKKLASKPLDVHLMVTDP-QDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYI 128 (229)
T ss_pred HHHHHHhcCCCCeEEEEEecCH-HHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Confidence 5777888889999999998765 55899999999999999875 2 2467889999999887643
Q ss_pred ------------cC---------hhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ------------DG---------LISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ------------~~---------~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.| .+.-+.++++..++ .++-+-+.|||. .+-+..+..+|||.+++||..++.
T Consensus 129 ~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 129 HLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred HhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcC
Confidence 01 22233334433322 246799999997 558889999999999999875654
No 134
>PRK07695 transcriptional regulator TenI; Provisional
Probab=97.87 E-value=0.00026 Score=61.60 Aligned_cols=46 Identities=28% Similarity=0.481 Sum_probs=40.0
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+..+.++.+.+ ++||++.||| +.+++..++..||++|.+|+.|...
T Consensus 138 ~~~l~~~~~~~---~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~ 183 (201)
T PRK07695 138 LEELSDIARAL---SIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFSS 183 (201)
T ss_pred HHHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 35666676665 7999999999 9999999999999999999999864
No 135
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.86 E-value=0.00034 Score=61.98 Aligned_cols=113 Identities=13% Similarity=0.145 Sum_probs=84.0
Q ss_pred HHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--CcHHHHHHHHHCCCeEeec--------------
Q 022271 54 LIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 54 ~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~--~~~~~v~~~~~~G~~v~~~-------------- 116 (300)
.++.+|+. ++.|+=|-|+...| +.+++.+.+.|++.|+++.-. .+...++.+|+.|++....
T Consensus 52 ~i~~lr~~~~~~~~dvHLMv~~P-~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l 130 (223)
T PRK08745 52 VCQALRKHGITAPIDVHLMVEPV-DRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVL 130 (223)
T ss_pred HHHHHHhhCCCCCEEEEeccCCH-HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHH
Confidence 67788888 68999999998754 568899999999999998742 1457888899999886543
Q ss_pred ------------c---------ChhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 ------------D---------GLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 ------------~---------~~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
. ..+.-+.++++...+ .++.|-++|||. .+.+..+...|||.+++||.+..
T Consensus 131 ~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~ 204 (223)
T PRK08745 131 PELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFN 204 (223)
T ss_pred hhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhC
Confidence 0 122233344443321 247799999996 67888999999999999998553
No 136
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.85 E-value=4.3e-05 Score=69.04 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=53.3
Q ss_pred cHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++++.+.+.|+.-++. ...+.++.++++.+ ++||++.|||.+.+|+..++.+||++|++||.++.
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~---~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETV---FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 445555555555443332 12466788888887 79999999999999999999999999999999997
Q ss_pred Cc
Q 022271 169 SE 170 (300)
Q Consensus 169 t~ 170 (300)
.+
T Consensus 109 ~p 110 (254)
T TIGR00735 109 NP 110 (254)
T ss_pred Ch
Confidence 64
No 137
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.84 E-value=9.9e-05 Score=69.50 Aligned_cols=105 Identities=22% Similarity=0.272 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhcCC-cEEeeeecCC---------Cc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 50 YLRDLIRKTRSLTER-PFGVGVVLAF---------PH---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~-P~gvnl~~~~---------~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
-+.+.|+.+|+..+. |+++.+.... .. .+.++.+.+.+++.|.++.|...... .
T Consensus 204 f~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-------------~ 270 (338)
T cd02933 204 FLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-------------E 270 (338)
T ss_pred HHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-------------c
Confidence 466778888887543 8888876431 11 24566777789999999777532111 1
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.....+..++++.+ ++||++.|||. ++++.+++..| ||.|.+|+.|++-++
T Consensus 271 ~~~~~~~~~ik~~~---~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~ 322 (338)
T cd02933 271 DQPPDFLDFLRKAF---KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIANPD 322 (338)
T ss_pred ccchHHHHHHHHHc---CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCcC
Confidence 23457778888887 79999999997 99999999986 999999999998753
No 138
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.83 E-value=0.00019 Score=63.92 Aligned_cols=66 Identities=24% Similarity=0.451 Sum_probs=49.3
Q ss_pred cHHHHHHHHHCCCeEe-e-c---cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 99 SEELVLEAHSAGVKVV-P-Q---DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~-~-~---~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
+.++++++.+.|+.-+ . + +| .+.++.++++.+ ++|||++|||++.+|+.++...|++||.+|++|.
T Consensus 149 ~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~ 224 (229)
T PF00977_consen 149 LEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALH 224 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHHHTTECEEEESHHHH
T ss_pred HHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhh
Confidence 4566666666654422 1 1 22 467888898888 8999999999999999999999999999999984
No 139
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.83 E-value=0.00049 Score=62.09 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=87.2
Q ss_pred cHHHHHHHHhCCceE--EecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc--
Q 022271 24 GPELVAAVANAGGLG--LLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS-- 99 (300)
Q Consensus 24 ~~~la~avs~aGglG--~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~-- 99 (300)
-.+++.+..++|.-+ ++....| ..--.+.++.+|+.++.|+--+=+. -++.++......|++.|.+-....+
T Consensus 70 ~~~~a~~y~~~GA~aiSVlTe~~~--F~Gs~~dL~~v~~~~~~PvL~KDFI--id~~QI~eA~~~GADaVLLI~~~L~~~ 145 (254)
T PF00218_consen 70 PAEIAKAYEEAGAAAISVLTEPKF--FGGSLEDLRAVRKAVDLPVLRKDFI--IDPYQIYEARAAGADAVLLIAAILSDD 145 (254)
T ss_dssp HHHHHHHHHHTT-SEEEEE--SCC--CHHHHHHHHHHHHHSSS-EEEES-----SHHHHHHHHHTT-SEEEEEGGGSGHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC--CCCCHHHHHHHHHHhCCCcccccCC--CCHHHHHHHHHcCCCEeehhHHhCCHH
Confidence 357888877777533 3332222 1233356778888888887554222 2467788888899999876544333
Q ss_pred --HHHHHHHHHCCCeEeec------------------------cChhc----hHHHHHHhhCCCCCcEEEccCCCChHHH
Q 022271 100 --EELVLEAHSAGVKVVPQ------------------------DGLIS----LLPMVVDLIGDRDIPIIAAGGIVDARGY 149 (300)
Q Consensus 100 --~~~v~~~~~~G~~v~~~------------------------~~~~~----ll~~v~~~~~~~~iPViaaGGI~~g~~v 149 (300)
.++++.++..|..++.- ..++. ...++...+. .++.+|+.+||.+.+|+
T Consensus 146 ~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip-~~~~~iseSGI~~~~d~ 224 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIP-KDVIVISESGIKTPEDA 224 (254)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSH-TTSEEEEESS-SSHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCc-cceeEEeecCCCCHHHH
Confidence 24555566677766542 11222 2223333322 15889999999999999
Q ss_pred HHHHHCCCcEEEeccccccCcc
Q 022271 150 VAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 150 ~aal~lGAdgV~~GT~fl~t~E 171 (300)
..+...|+|||.+|+.|+.++.
T Consensus 225 ~~l~~~G~davLVGe~lm~~~d 246 (254)
T PF00218_consen 225 RRLARAGADAVLVGEALMRSPD 246 (254)
T ss_dssp HHHCTTT-SEEEESHHHHTSSS
T ss_pred HHHHHCCCCEEEECHHHhCCCC
Confidence 9999999999999999998853
No 140
>PRK08005 epimerase; Validated
Probab=97.83 E-value=0.00035 Score=61.31 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=82.4
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--CcHHHHHHHHHCCCeEeec--------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~--~~~~~v~~~~~~G~~v~~~-------------- 116 (300)
+.++.+|+.|+.|+=|-|+...| +.+++.+.+.|++.|++++-. .+...++.+|+.|+++...
T Consensus 48 ~~i~~l~~~t~~~~DvHLMv~~P-~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l 126 (210)
T PRK08005 48 KTIQAVAQQTRHPLSFHLMVSSP-QRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLA 126 (210)
T ss_pred HHHHHHHhcCCCCeEEEeccCCH-HHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHH
Confidence 36777888889999999998765 558999999999999998742 2457888899999887643
Q ss_pred ------------cC---------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 ------------DG---------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 ------------~~---------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.| .+.-+.++++... +..+-+.|||. .+-+..+...|||.+++||.+..
T Consensus 127 ~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~--~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF~ 196 (210)
T PRK08005 127 LQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFP--AAECWADGGIT-LRAARLLAAAGAQHLVIGRALFT 196 (210)
T ss_pred HhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcc--cCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhhC
Confidence 00 1122233333322 34699999996 66788999999999999998653
No 141
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.82 E-value=0.00069 Score=59.20 Aligned_cols=132 Identities=23% Similarity=0.335 Sum_probs=92.6
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~ 104 (300)
+++.+..+ ||+.++-- .+.+++.+ +.|+++++.. +..+|.+-+. +.+.++.+++.|++++... +. .+++++
T Consensus 24 ~~~~al~~-~Gi~~iEi-t~~t~~a~-~~i~~l~~~~~~~~vGAGTVl---~~~~a~~a~~aGA~FivsP-~~-~~~v~~ 95 (204)
T TIGR01182 24 PLAKALIE-GGLRVLEV-TLRTPVAL-DAIRLLRKEVPDALIGAGTVL---NPEQLRQAVDAGAQFIVSP-GL-TPELAK 95 (204)
T ss_pred HHHHHHHH-cCCCEEEE-eCCCccHH-HHHHHHHHHCCCCEEEEEeCC---CHHHHHHHHHcCCCEEECC-CC-CHHHHH
Confidence 55655555 55777643 24565544 4677776543 4557777664 5788999999999999655 43 468888
Q ss_pred HHHHCCCeEeec--------------------cCh-----hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 105 EAHSAGVKVVPQ--------------------DGL-----ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 105 ~~~~~G~~v~~~--------------------~~~-----~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.+++.|+.+++. .+. ..++..++.-+ .++|+++.|||.- ..+..+|..|+.+
T Consensus 96 ~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal~~pl--p~i~~~ptGGV~~-~N~~~~l~aGa~~ 172 (204)
T TIGR01182 96 HAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEVSGGVKMLKALAGPF--PQVRFCPTGGINL-ANVRDYLAAPNVA 172 (204)
T ss_pred HHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHHhccC--CCCcEEecCCCCH-HHHHHHHhCCCEE
Confidence 888888888764 111 22333333333 3799999999965 8999999999999
Q ss_pred EEecccccc
Q 022271 160 ICLGTRFVA 168 (300)
Q Consensus 160 V~~GT~fl~ 168 (300)
|.+||.+.-
T Consensus 173 vg~Gs~L~~ 181 (204)
T TIGR01182 173 CGGGSWLVP 181 (204)
T ss_pred EEEChhhcC
Confidence 999998774
No 142
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.81 E-value=0.00032 Score=62.93 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=52.7
Q ss_pred cHHHHHHHHHCCCe-Eeec----cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-----C-CcEEEe
Q 022271 99 SEELVLEAHSAGVK-VVPQ----DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-----G-AQGICL 162 (300)
Q Consensus 99 ~~~~v~~~~~~G~~-v~~~----~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-----G-AdgV~~ 162 (300)
+.++++++.+.|+. ++.+ +| .+.++.++++.. ++|||++|||++-+|+.++..+ | ++||.+
T Consensus 146 ~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~---~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 146 PVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA---EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred HHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEE
Confidence 45667777766643 2222 22 567888888876 8999999999999999999997 6 999999
Q ss_pred ccccccC
Q 022271 163 GTRFVAS 169 (300)
Q Consensus 163 GT~fl~t 169 (300)
|++|.--
T Consensus 223 g~Al~~g 229 (241)
T PRK14114 223 GRAFLEG 229 (241)
T ss_pred ehHHHCC
Confidence 9998543
No 143
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=97.81 E-value=0.00011 Score=69.45 Aligned_cols=119 Identities=21% Similarity=0.287 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhcCCcE--EeeeecCCC-----c----HHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 49 DYLRDLIRKTRSLTERPF--GVGVVLAFP-----H----NENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~~P~--gvnl~~~~~-----~----~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
.-+.+.++.+|+..+.+| ++-+-.... . .+.++.+.+.| ++.|.++.|..... ....+...-.....
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~-~~~~~~~~~~~~~~ 270 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTL-LGLAHVVPSMGMPP 270 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcc-cccccccCCCCCCc
Confidence 456677888898876554 444443221 1 24567777887 89999987753211 00000000000000
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.....++.++++.+ ++||++.|+|.|.+++.+++..| ||+|.+|+.+++-++
T Consensus 271 ~~~~~~~~~ik~~~---~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~ 323 (343)
T cd04734 271 GPFLPLAARIKQAV---DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPH 323 (343)
T ss_pred chhHHHHHHHHHHc---CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCcc
Confidence 11345667777777 79999999999999999999975 999999999998753
No 144
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.76 E-value=0.00055 Score=60.38 Aligned_cols=61 Identities=25% Similarity=0.398 Sum_probs=49.0
Q ss_pred HHCCCeEeecc-----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 107 HSAGVKVVPQD-----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 107 ~~~G~~v~~~~-----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+.-|.+++... ....++.++++.+. ++||+..|||+|.+++..++.+|||+|++||.+.-.
T Consensus 145 e~~g~~ivyLe~SG~~~~~e~I~~v~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 145 EYLGMPIVYLEYSGAYGPPEVVRAVKKVLG--DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred HHcCCeEEEeCCCCCcCCHHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 44677766542 24566777777642 699999999999999999999999999999999875
No 145
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.76 E-value=0.0005 Score=59.69 Aligned_cols=134 Identities=20% Similarity=0.326 Sum_probs=89.3
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
.+++.++.+. |+.++-- .+.+++.+ +.|+++++. .+.-+|++-+. +.++++.+++.|++++..- +. .++++
T Consensus 23 ~~~~~al~~g-Gi~~iEi-T~~t~~a~-~~I~~l~~~~p~~~vGAGTV~---~~e~a~~a~~aGA~FivSP-~~-~~~v~ 94 (196)
T PF01081_consen 23 VPIAEALIEG-GIRAIEI-TLRTPNAL-EAIEALRKEFPDLLVGAGTVL---TAEQAEAAIAAGAQFIVSP-GF-DPEVI 94 (196)
T ss_dssp HHHHHHHHHT-T--EEEE-ETTSTTHH-HHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SEEEES-S---HHHH
T ss_pred HHHHHHHHHC-CCCEEEE-ecCCccHH-HHHHHHHHHCCCCeeEEEecc---CHHHHHHHHHcCCCEEECC-CC-CHHHH
Confidence 4677776664 4777643 24566544 566666654 34557776664 5789999999999999876 33 57889
Q ss_pred HHHHHCCCeEeec-------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 104 LEAHSAGVKVVPQ-------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 104 ~~~~~~G~~v~~~-------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
+.+++.|+.+++. .|-..++..++.-+ .++|+++.|||.- ..+..+|.+|+.
T Consensus 95 ~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~--p~~~~~ptGGV~~-~N~~~~l~ag~~ 171 (196)
T PF01081_consen 95 EYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALRGPF--PDLPFMPTGGVNP-DNLAEYLKAGAV 171 (196)
T ss_dssp HHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTT--TT-EEEEBSS--T-TTHHHHHTSTTB
T ss_pred HHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHhccC--CCCeEEEcCCCCH-HHHHHHHhCCCE
Confidence 9999999888864 11134555555444 3799999999975 689999999999
Q ss_pred EEEeccccccC
Q 022271 159 GICLGTRFVAS 169 (300)
Q Consensus 159 gV~~GT~fl~t 169 (300)
+|.+||.+.-.
T Consensus 172 ~vg~Gs~L~~~ 182 (196)
T PF01081_consen 172 AVGGGSWLFPK 182 (196)
T ss_dssp SEEEESGGGSH
T ss_pred EEEECchhcCH
Confidence 99999876543
No 146
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.75 E-value=0.0022 Score=57.95 Aligned_cols=132 Identities=18% Similarity=0.316 Sum_probs=83.6
Q ss_pred HHHhCCceEEecCCCC--------CCHHH---HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEE-----
Q 022271 30 AVANAGGLGLLRAPDW--------EAPDY---LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV----- 93 (300)
Q Consensus 30 avs~aGglG~i~~~~~--------~~~~~---l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~----- 93 (300)
+..++|.=|++-. |+ .+|+. +...+.++|...+.|+|||+.-+++ .+.+..+...+.++|=.
T Consensus 36 ~l~~~GvD~vive-N~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~-~aal~iA~a~ga~FIRv~~~~g 113 (257)
T TIGR00259 36 ALEEGGVDAVMFE-NFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDA-VAALAIAMAVGAKFIRVNVLTG 113 (257)
T ss_pred HHHhCCCCEEEEe-cCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCC-HHHHHHHHHhCCCEEEEccEee
Confidence 3445666666643 32 13443 4445667777788899999998654 45667777777777632
Q ss_pred ----cCCCC---cHHHHHHHHH--CCCeEeec---------------------------------------cChhchHHH
Q 022271 94 ----SWGEY---SEELVLEAHS--AGVKVVPQ---------------------------------------DGLISLLPM 125 (300)
Q Consensus 94 ----~~G~~---~~~~v~~~~~--~G~~v~~~---------------------------------------~~~~~ll~~ 125 (300)
..|.. ..++++.-++ ..++++.+ ...+..+.+
T Consensus 114 ~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~ 193 (257)
T TIGR00259 114 VYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKL 193 (257)
T ss_pred eEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHH
Confidence 11110 1233332222 34444433 124566777
Q ss_pred HHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 126 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 126 v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
++++.. +.||+.+||+ +++-+.+++.. |||+.+||.|=
T Consensus 194 vr~~~~--~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 194 AKETVK--DTPVLAGSGV-NLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHhccC--CCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcc
Confidence 776542 6899999999 67889999987 99999999986
No 147
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.75 E-value=0.0012 Score=61.07 Aligned_cols=86 Identities=17% Similarity=0.272 Sum_probs=60.3
Q ss_pred HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe-ec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV-PQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~-~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
..+.+++.|-.+...-.. .....+++.+.|...+ +. ...-..+..+++.. ++||+.++||+++.|
T Consensus 189 aa~~L~~~Gf~v~~yc~~--d~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~---~vpVivdAGIg~~sd 263 (326)
T PRK11840 189 ATEILVKEGFQVMVYCSD--DPIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGA---TVPVLVDAGVGTASD 263 (326)
T ss_pred HHHHHHHCCCEEEEEeCC--CHHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHcC---CCcEEEeCCCCCHHH
Confidence 344455558777333223 3456677777777422 21 11345666666664 799999999999999
Q ss_pred HHHHHHCCCcEEEeccccccC
Q 022271 149 YVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t 169 (300)
++.++.+|||||.+-|+..-+
T Consensus 264 a~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 264 AAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred HHHHHHcCCCEEEEcceeccC
Confidence 999999999999999999743
No 148
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.74 E-value=0.00065 Score=64.97 Aligned_cols=155 Identities=15% Similarity=0.084 Sum_probs=100.4
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCc--eEEecCCC-CCCHHHHHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHH
Q 022271 10 EYGIVQAPLGPDISGPELVAAVANAGG--LGLLRAPD-WEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILS 85 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGg--lG~i~~~~-~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e 85 (300)
+.|.+|-.+- ..+..+-..-+.+.+. .+++=.|. ...... .+.++++|+. +++++-+.|...++....++.+.+
T Consensus 171 ~~p~L~vALD-~~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G-~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~ 248 (391)
T PRK13307 171 DPPYLQVALD-LPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFG-LEVISKIREVRPDAFIVADLKTLDTGNLEARMAAD 248 (391)
T ss_pred ccceEEEecC-CCCHHHHHHHHHhcccccceEEEECHHHHHHhC-HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHh
Confidence 4577887776 2444433333344442 34432210 000000 1457777776 678999999998876655888999
Q ss_pred cCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec----c----------------------------ChhchHHHHHHhh
Q 022271 86 EKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ----D----------------------------GLISLLPMVVDLI 130 (300)
Q Consensus 86 ~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~----~----------------------------~~~~ll~~v~~~~ 130 (300)
.|++.+++++-.+ ....++.+++.|+.++.+ . +.+.-+.++++..
T Consensus 249 aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~~~~~~kI~~ikk~~ 328 (391)
T PRK13307 249 ATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAWGNIKEIKKAG 328 (391)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCCcccchHHHHHHHHHhC
Confidence 9999999985332 245677788889887762 0 0112233444331
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+++|.++|||. .+.+..++..|||.+.+||....+
T Consensus 329 --~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~a 364 (391)
T PRK13307 329 --GKILVAVAGGVR-VENVEEALKAGADILVVGRAITKS 364 (391)
T ss_pred --CCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhCC
Confidence 268999999998 888999999999999999986543
No 149
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.70 E-value=9.4e-05 Score=70.05 Aligned_cols=121 Identities=16% Similarity=0.306 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhcC----C--cEEeeeecCCC------c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe
Q 022271 50 YLRDLIRKTRSLTE----R--PFGVGVVLAFP------H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 50 ~l~~~i~~~r~~~~----~--P~gvnl~~~~~------~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~ 114 (300)
-+.+.++.+|+..+ . |+++.+-.... . .+.++.+.+.|++.|.++.|..... .. ...
T Consensus 196 ~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~-~~---~~~---- 267 (353)
T cd04735 196 FPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRK-SR---RGR---- 267 (353)
T ss_pred HHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccc-cc---cCC----
Confidence 36677888888654 3 45554443221 1 2456777788999999987653210 00 000
Q ss_pred eccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCC
Q 022271 115 PQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDK 187 (300)
Q Consensus 115 ~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~ 187 (300)
......+.++++.++ .++|||+.|||.|++++.+++..|||+|.+|+.|++.+ .+-+++.+...
T Consensus 268 --~~~~~~~~~ik~~~~-~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadP------dl~~k~~~G~~ 331 (353)
T cd04735 268 --DDNQTIMELVKERIA-GRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDP------DWVEKIKEGRE 331 (353)
T ss_pred --cchHHHHHHHHHHhC-CCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCc------cHHHHHHcCCh
Confidence 112345555666653 26999999999999999999999999999999999874 35555555433
No 150
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.69 E-value=0.00011 Score=65.76 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=43.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.++.++++.+ ++||++.|||.+.+++..++..||++|++||.++..
T Consensus 59 ~~~~i~~i~~~~---~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~ 106 (243)
T cd04731 59 MLDVVERVAEEV---FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVEN 106 (243)
T ss_pred cHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhC
Confidence 467788888876 799999999999999999999999999999998865
No 151
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.68 E-value=0.00082 Score=65.34 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=83.0
Q ss_pred HHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHH
Q 022271 27 LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEA 106 (300)
Q Consensus 27 la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~ 106 (300)
.+....++|.-|+...+ ..+...+.+.++.+|+. +.++++.++......+.++.+.+.|++.|.++.|.. ..
T Consensus 73 ~v~~a~~aGAdgV~v~g-~~~~~~~~~~i~~a~~~-G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~-~~----- 144 (430)
T PRK07028 73 EVEMAAKAGADIVCILG-LADDSTIEDAVRAARKY-GVRLMADLINVPDPVKRAVELEELGVDYINVHVGID-QQ----- 144 (430)
T ss_pred HHHHHHHcCCCEEEEec-CCChHHHHHHHHHHHHc-CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccc-hh-----
Confidence 45555677877766322 22333455667777763 556666554433335567778888999997764431 10
Q ss_pred HHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 107 HSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 107 ~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
..+ ...+..+.++++.+ ++||++.||| +.+.+..++..||++|.+||.+...
T Consensus 145 -~~~------~~~~~~l~~l~~~~---~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 145 -MLG------KDPLELLKEVSEEV---SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred -hcC------CChHHHHHHHHhhC---CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCC
Confidence 001 12346777777765 7999999999 6889999999999999999998764
No 152
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.67 E-value=0.001 Score=58.83 Aligned_cols=134 Identities=10% Similarity=0.149 Sum_probs=90.4
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh-----hcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS-----LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE 100 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~-----~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~ 100 (300)
+++.++.+ ||+.++-- .+.+|+.+ +.|+++++ ..+..+|++-+. +.++++.+++.|++++..- +. .+
T Consensus 31 ~~~~al~~-gGi~~iEi-T~~tp~a~-~~i~~l~~~~~~~~p~~~vGaGTVl---~~e~a~~a~~aGA~FiVsP-~~-~~ 102 (222)
T PRK07114 31 KVIKACYD-GGARVFEF-TNRGDFAH-EVFAELVKYAAKELPGMILGVGSIV---DAATAALYIQLGANFIVTP-LF-NP 102 (222)
T ss_pred HHHHHHHH-CCCCEEEE-eCCCCcHH-HHHHHHHHHHHhhCCCeEEeeEeCc---CHHHHHHHHHcCCCEEECC-CC-CH
Confidence 55555555 66777743 24455433 33444432 123457777665 5788999999999999876 43 46
Q ss_pred HHHHHHHHCCCeEeec--------------------cC----hhchHHHHHHhhCCCCCcEEEccCCCC-hHHHHHHHHC
Q 022271 101 ELVLEAHSAGVKVVPQ--------------------DG----LISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSL 155 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~--------------------~~----~~~ll~~v~~~~~~~~iPViaaGGI~~-g~~v~aal~l 155 (300)
++++.+++.|+.+++. .+ -..++..+..-+ .++|+++.|||.- ...+..+|..
T Consensus 103 ~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~--p~i~~~ptGGV~~~~~n~~~yl~a 180 (222)
T PRK07114 103 DIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPM--PWTKIMPTGGVEPTEENLKKWFGA 180 (222)
T ss_pred HHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhccC--CCCeEEeCCCCCcchhcHHHHHhC
Confidence 8888888888888764 11 122333333222 3799999999985 5899999999
Q ss_pred CCcEEEeccccccC
Q 022271 156 GAQGICLGTRFVAS 169 (300)
Q Consensus 156 GAdgV~~GT~fl~t 169 (300)
|+.+|.+||-..-.
T Consensus 181 Ga~avg~Gs~L~~~ 194 (222)
T PRK07114 181 GVTCVGMGSKLIPK 194 (222)
T ss_pred CCEEEEEChhhcCc
Confidence 99999999987643
No 153
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.66 E-value=0.00012 Score=65.98 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=44.6
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++||++.|||.+.+++.+++..||++|++||.++..+
T Consensus 62 ~~~~i~~i~~~~---~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p 110 (253)
T PRK02083 62 MLDVVERVAEQV---FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANP 110 (253)
T ss_pred hHHHHHHHHHhC---CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCc
Confidence 467888888877 7999999999999999999999999999999998864
No 154
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.65 E-value=0.00087 Score=58.33 Aligned_cols=127 Identities=22% Similarity=0.406 Sum_probs=83.3
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-------CC-
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-------GE- 97 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-------G~- 97 (300)
..+.| +..||.-++--. .+|+ .++.+|+.++.|++|--+ +.+.+-.++++|++.|.+.- |.
T Consensus 31 ~i~~A-A~~ggAt~vDIA--adp~----LV~~~~~~s~lPICVSaV----ep~~f~~aV~AGAdliEIGNfDsFY~qGr~ 99 (242)
T PF04481_consen 31 AIVKA-AEIGGATFVDIA--ADPE----LVKLAKSLSNLPICVSAV----EPELFVAAVKAGADLIEIGNFDSFYAQGRR 99 (242)
T ss_pred HHHHH-HHccCCceEEec--CCHH----HHHHHHHhCCCCeEeecC----CHHHHHHHHHhCCCEEEecchHHHHhcCCe
Confidence 33443 444655554321 3564 677888899999998654 35566677778888876521 11
Q ss_pred --------------------------C----c---HHHHHHHHHCCCeEeeccC--------------------hhchHH
Q 022271 98 --------------------------Y----S---EELVLEAHSAGVKVVPQDG--------------------LISLLP 124 (300)
Q Consensus 98 --------------------------~----~---~~~v~~~~~~G~~v~~~~~--------------------~~~ll~ 124 (300)
| - -.+..++.+.|+.++.++| ++.-..
T Consensus 100 f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay 179 (242)
T PF04481_consen 100 FSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAY 179 (242)
T ss_pred ecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHH
Confidence 1 1 1344556678888887622 233334
Q ss_pred HHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 125 MVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 125 ~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
++.+++ ++||+.+.||++- .+--+++.||+||-+|++.=
T Consensus 180 ~ISr~v---~iPVlcASGlS~v-T~PmAiaaGAsGVGVGSavn 218 (242)
T PF04481_consen 180 AISRAV---SIPVLCASGLSAV-TAPMAIAAGASGVGVGSAVN 218 (242)
T ss_pred HHHhcc---CCceEeccCcchh-hHHHHHHcCCcccchhHHhh
Confidence 455555 8999999999765 56788999999999998753
No 155
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.65 E-value=0.0018 Score=55.85 Aligned_cols=134 Identities=21% Similarity=0.368 Sum_probs=77.8
Q ss_pred HHHHHHHHhCCceEEecCCCCC--CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-------
Q 022271 25 PELVAAVANAGGLGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW------- 95 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~--~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~------- 95 (300)
.+++.++.++| +.++--- .. +..++.+.+++.+..+ -.+.+.+. ..+.++.+++.|+++|....
T Consensus 27 ~~~~~~~~~~G-v~~vqlr-~k~~~~~e~~~~~~~~~~~~--~~g~gtvl---~~d~~~~A~~~gAdgv~~p~~~~~~~~ 99 (187)
T PRK07455 27 LQMAEAVAAGG-MRLIEIT-WNSDQPAELISQLREKLPEC--IIGTGTIL---TLEDLEEAIAAGAQFCFTPHVDPELIE 99 (187)
T ss_pred HHHHHHHHHCC-CCEEEEe-CCCCCHHHHHHHHHHhCCCc--EEeEEEEE---cHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 35666666544 6665321 12 3334444444433321 23444333 24788888888888875532
Q ss_pred -----------CCCcHHHHHHHHHCCCeEeeccCh-----hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 96 -----------GEYSEELVLEAHSAGVKVVPQDGL-----ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 96 -----------G~~~~~~v~~~~~~G~~v~~~~~~-----~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
|+-...-+.+..+.|...+...++ ...+.+++..+. ++|+++.||| +.+.+..++..||++
T Consensus 100 ~~~~~~~~~i~G~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~~~~--~ipvvaiGGI-~~~n~~~~l~aGa~~ 176 (187)
T PRK07455 100 AAVAQDIPIIPGALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQGPLG--HIPLIPTGGV-TLENAQAFIQAGAIA 176 (187)
T ss_pred HHHHcCCCEEcCcCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHhhCC--CCcEEEeCCC-CHHHHHHHHHCCCeE
Confidence 111112222333445444432222 345566665542 5999999999 779999999999999
Q ss_pred EEecccccc
Q 022271 160 ICLGTRFVA 168 (300)
Q Consensus 160 V~~GT~fl~ 168 (300)
|.+||.++-
T Consensus 177 vav~s~i~~ 185 (187)
T PRK07455 177 VGLSGQLFP 185 (187)
T ss_pred EEEehhccc
Confidence 999998753
No 156
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.64 E-value=0.00017 Score=64.03 Aligned_cols=49 Identities=29% Similarity=0.465 Sum_probs=43.6
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++||++.|||.+-+++..++.+||++|++||.++-.+
T Consensus 62 ~~~~i~~i~~~~---~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~ 110 (233)
T PRK00748 62 NLELIEAIVKAV---DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNP 110 (233)
T ss_pred cHHHHHHHHHHC---CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhCH
Confidence 456777777776 7999999999999999999999999999999998754
No 157
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.63 E-value=0.002 Score=57.41 Aligned_cols=51 Identities=22% Similarity=0.370 Sum_probs=40.2
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+|+..=..++.+.+ .++|||++|||++.+|+.++..+|++||.+|++|...
T Consensus 167 dGt~~G~d~l~~~~--~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 167 DGTLTGIEEIERFW--GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred hhcccCHHHHHHhc--CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 34443333555543 2799999999999999999999999999999998654
No 158
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.63 E-value=0.0018 Score=56.38 Aligned_cols=131 Identities=22% Similarity=0.278 Sum_probs=90.1
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~ 104 (300)
+++.+..+ ||+.++-- .+.+|+.+ +.|+++++.. +.-+|++-+. +.++++.+++.|++++..- +. .+++++
T Consensus 20 ~ia~al~~-gGi~~iEi-t~~tp~a~-~~I~~l~~~~~~~~vGAGTVl---~~e~a~~ai~aGA~FivSP-~~-~~~vi~ 91 (201)
T PRK06015 20 PLARALAA-GGLPAIEI-TLRTPAAL-DAIRAVAAEVEEAIVGAGTIL---NAKQFEDAAKAGSRFIVSP-GT-TQELLA 91 (201)
T ss_pred HHHHHHHH-CCCCEEEE-eCCCccHH-HHHHHHHHHCCCCEEeeEeCc---CHHHHHHHHHcCCCEEECC-CC-CHHHHH
Confidence 55555445 56777643 24566544 4677776543 3457776664 5788999999999999776 33 468888
Q ss_pred HHHHCCCeEeec--------------------cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 105 EAHSAGVKVVPQ--------------------DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 105 ~~~~~G~~v~~~--------------------~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.+++.|+.+++. .+ -..++..++.-+ .++|+++.|||.. +.+..+|.+|+..
T Consensus 92 ~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~pl--p~~~l~ptGGV~~-~n~~~~l~ag~~~ 168 (201)
T PRK06015 92 AANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALSSPL--AGTFFCPTGGISL-KNARDYLSLPNVV 168 (201)
T ss_pred HHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhC--CCCcEEecCCCCH-HHHHHHHhCCCeE
Confidence 888888888764 11 123344444333 3799999999965 6999999999997
Q ss_pred EEeccccc
Q 022271 160 ICLGTRFV 167 (300)
Q Consensus 160 V~~GT~fl 167 (300)
+..||.+.
T Consensus 169 ~~ggs~l~ 176 (201)
T PRK06015 169 CVGGSWVA 176 (201)
T ss_pred EEEchhhC
Confidence 77766555
No 159
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.63 E-value=0.0011 Score=59.05 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=79.8
Q ss_pred HHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec------------
Q 022271 53 DLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 53 ~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~------------ 116 (300)
+.++++|+.+ +.|+=+.|++..| ...++.+.+.|++.|++++-.. +...++.+++.|..+...
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm~~~p-~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~ 132 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLMVSNP-EKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFP 132 (228)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCH-HHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHH
Confidence 4677788877 8899889986543 5577999999999999986432 346777788888776543
Q ss_pred -c--C----------------------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 -D--G----------------------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 -~--~----------------------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
. + .+.-+.++++... +..+.++|||.. +.+..+...|||.+++||....
T Consensus 133 ~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~--~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~ 206 (228)
T PTZ00170 133 LIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYP--HLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFK 206 (228)
T ss_pred HHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcc--cCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhC
Confidence 0 0 1122233333321 477999999965 5888999999999999998553
No 160
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=97.63 E-value=0.0003 Score=67.33 Aligned_cols=124 Identities=17% Similarity=0.278 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhhc--CCcEEeeeecCC--------------------Cc---HHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 49 DYLRDLIRKTRSLT--ERPFGVGVVLAF--------------------PH---NENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 49 ~~l~~~i~~~r~~~--~~P~gvnl~~~~--------------------~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
.-+.+.|+++|+.. +-|+++.+-... .. .+.++.+.+.|++.|.++.|... ...
T Consensus 202 rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~-~~~ 280 (382)
T cd02931 202 RFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYD-AWY 280 (382)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCc-ccc
Confidence 34667788888876 347888776421 01 24567777889999999977531 100
Q ss_pred HHHHHCCCeEeeccC-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcccCCCHHHHHH
Q 022271 104 LEAHSAGVKVVPQDG-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEESYAHPEYKRK 181 (300)
Q Consensus 104 ~~~~~~G~~v~~~~~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~Es~~~~~~k~~ 181 (300)
... - ......+ ...+..++++.+ ++||++.|||.+++++.+++..| ||.|.+|+.|++-++ +-++
T Consensus 281 ~~~---~-~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~------l~~k 347 (382)
T cd02931 281 WNH---P-PMYQKKGMYLPYCKALKEVV---DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPD------VVNK 347 (382)
T ss_pred ccc---C-CccCCcchhHHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCcc------HHHH
Confidence 000 0 0000011 234566777777 79999999999999999999976 999999999998753 4455
Q ss_pred HHcCC
Q 022271 182 LVEMD 186 (300)
Q Consensus 182 i~~a~ 186 (300)
+.+..
T Consensus 348 ~~~g~ 352 (382)
T cd02931 348 IRRGR 352 (382)
T ss_pred HHcCC
Confidence 55443
No 161
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.63 E-value=0.00055 Score=59.76 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=81.8
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--CcHHHHHHHHHCCCeEeec--------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~--~~~~~v~~~~~~G~~v~~~-------------- 116 (300)
+.++++|+.++.|+=|-|+...| ..+++.+.+.|++.|+++.-. .+.++++.+++.|+++...
T Consensus 47 ~~i~~i~~~~~~~~DvHLMv~~P-~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l 125 (201)
T PF00834_consen 47 DIIKAIRKITDLPLDVHLMVENP-ERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYL 125 (201)
T ss_dssp HHHHHHHTTSSSEEEEEEESSSG-GGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTG
T ss_pred HHHHHHhhcCCCcEEEEeeeccH-HHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHh
Confidence 46778888899999999999876 458999999999999998632 2468899999999987643
Q ss_pred ------------c---------ChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 117 ------------D---------GLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 117 ------------~---------~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
. ..+.=+.++++... +.++.+.+.|||... .+..+..+|||.+++||...
T Consensus 126 ~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 126 DQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp CCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTT-THHHHHHHT--EEEESHHHH
T ss_pred hhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHHHHHcCCCEEEECHHHh
Confidence 0 01222333333322 135899999999765 77889999999999998754
No 162
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.62 E-value=0.0032 Score=56.79 Aligned_cols=148 Identities=22% Similarity=0.347 Sum_probs=91.1
Q ss_pred HHHhCCceEEecCCCC--------CCHHH---HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc----
Q 022271 30 AVANAGGLGLLRAPDW--------EAPDY---LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS---- 94 (300)
Q Consensus 30 avs~aGglG~i~~~~~--------~~~~~---l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~---- 94 (300)
+..++|.=|++-. |+ .+|+. +...+.++|+..+.|+|||+..+.+ .+.+..+...|.++|=..
T Consensus 37 ~l~~~GvDgiive-N~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~-~aalaiA~A~ga~FIRv~~~~g 114 (254)
T PF03437_consen 37 ALEEGGVDGIIVE-NMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRNDP-KAALAIAAATGADFIRVNVFVG 114 (254)
T ss_pred HHHHCCCCEEEEe-cCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCC-HHHHHHHHHhCCCEEEecCEEc
Confidence 3456676677643 32 24444 3445666777778899999997654 455666667777776311
Q ss_pred -----CCCC---cHHHHHHHHH--CCCeEeec---------------------------------------cChhchHHH
Q 022271 95 -----WGEY---SEELVLEAHS--AGVKVVPQ---------------------------------------DGLISLLPM 125 (300)
Q Consensus 95 -----~G~~---~~~~v~~~~~--~G~~v~~~---------------------------------------~~~~~ll~~ 125 (300)
.|.. ..++++.-++ +.++++.+ ...+..+.+
T Consensus 115 ~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~ 194 (254)
T PF03437_consen 115 AYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKR 194 (254)
T ss_pred eecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHH
Confidence 1110 1222222222 23444433 224567788
Q ss_pred HHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC--cccCCCHHHHHHHHc
Q 022271 126 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS--EESYAHPEYKRKLVE 184 (300)
Q Consensus 126 v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t--~Es~~~~~~k~~i~~ 184 (300)
+++.+ ++||+..+|+ |.+-+.+.|.. |||+.+||.|=-. -+.+.++.--+++++
T Consensus 195 vr~~~---~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~ 250 (254)
T PF03437_consen 195 VREAV---PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKDGKWENPVDPERVRRFME 250 (254)
T ss_pred HHhcC---CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeCCEeCCcCCHHHHHHHHH
Confidence 88877 6999999998 67788888876 9999999998743 234455554444443
No 163
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.60 E-value=0.00025 Score=66.81 Aligned_cols=118 Identities=18% Similarity=0.344 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhhc--CCcEEeeeecC------CCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc
Q 022271 49 DYLRDLIRKTRSLT--ERPFGVGVVLA------FPH---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD 117 (300)
Q Consensus 49 ~~l~~~i~~~r~~~--~~P~gvnl~~~------~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~ 117 (300)
.-+.+.|+++|+.. +-|+++.+-.. ... .+.++.+.+.+++.|.++.|..... ....+ .........
T Consensus 200 rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~-~~~~~-~~~~~~~~~ 277 (338)
T cd04733 200 RLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESP-AMAGA-KKESTIARE 277 (338)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCc-ccccc-ccCCccccc
Confidence 34567788888875 35788877531 111 3456777788999999987752111 00000 000000000
Q ss_pred C-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 118 G-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 118 ~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
+ ...+..++++.+ ++||++.|+|.+.+++.+++..| ||.|.||+.+++-++
T Consensus 278 ~~~~~~~~~ik~~v---~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~ 330 (338)
T cd04733 278 AYFLEFAEKIRKVT---KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPD 330 (338)
T ss_pred hhhHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCcc
Confidence 1 235566788877 89999999999999999999986 899999999998764
No 164
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=97.59 E-value=0.0024 Score=55.91 Aligned_cols=134 Identities=22% Similarity=0.364 Sum_probs=94.6
Q ss_pred CCCcHHHHHHHHhCCc--eEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAGG--LGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aGg--lG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+.+++.+|. +|++... -+.++++.++.+..+.. .+ -|+++.+.+.++..+.+.+.++++|-++
T Consensus 8 Glt~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~---~~-~VgVf~n~~~~~i~~i~~~~~ld~VQlH- 82 (208)
T COG0135 8 GLTRLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPK---VK-VVGVFVNESIEEILEIAEELGLDAVQLH- 82 (208)
T ss_pred CCCCHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC---CC-EEEEECCCCHHHHHHHHHhcCCCEEEEC-
Confidence 5777777777777764 8888653 14567777766666654 12 4777888777888888888999999999
Q ss_pred CCCcHHHHHHHHHCC-CeEeecc-------------------------------C------hhchHHHHHHhhCCCCCcE
Q 022271 96 GEYSEELVLEAHSAG-VKVVPQD-------------------------------G------LISLLPMVVDLIGDRDIPI 137 (300)
Q Consensus 96 G~~~~~~v~~~~~~G-~~v~~~~-------------------------------~------~~~ll~~v~~~~~~~~iPV 137 (300)
|..+.+.++.+++.. +.++... + .+.+++.. .. ..|+
T Consensus 83 G~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~---~~~~ 157 (208)
T COG0135 83 GDEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RL---SKPV 157 (208)
T ss_pred CCCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cc---cCCE
Confidence 555788899998754 5555320 0 23344443 11 6789
Q ss_pred EEccCCCChHHHHHHHHCCC-cEEEeccc
Q 022271 138 IAAGGIVDARGYVAALSLGA-QGICLGTR 165 (300)
Q Consensus 138 iaaGGI~~g~~v~aal~lGA-dgV~~GT~ 165 (300)
+.|||| +++.+..++.++. .||=+-|.
T Consensus 158 ~LAGGL-~p~NV~~ai~~~~p~gvDvSSG 185 (208)
T COG0135 158 MLAGGL-NPDNVAEAIALGPPYGVDVSSG 185 (208)
T ss_pred EEECCC-CHHHHHHHHHhcCCceEEeccc
Confidence 999999 7889999999887 77766543
No 165
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.58 E-value=0.00085 Score=59.43 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCc------HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH------NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~------~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.+.++|+++++.. .|.-++++...+. ....+.+.+.|+++|-++.|-.+ .| .+.
T Consensus 104 ~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~---------~g-------at~ 166 (221)
T PRK00507 104 DWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFST---------GG-------ATV 166 (221)
T ss_pred CHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCC---------CC-------CCH
Confidence 4678888999888854 4667888765443 34467778899999988776421 11 234
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
..+..+++.+. .+++|.++|||.|.+++.+++.+||+-+-..
T Consensus 167 ~~v~~m~~~~~-~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 167 EDVKLMRETVG-PRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred HHHHHHHHHhC-CCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 44444555543 2699999999999999999999999976543
No 166
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.57 E-value=0.00022 Score=63.98 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=55.7
Q ss_pred cHHHHHHHHHCCCeEeec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 99 SEELVLEAHSAGVKVVPQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|.++++...+.|+..++. ...+.++.++.+.+ ++||.+.|||.|.+++..+|.+||+.|.+||..+..
T Consensus 34 p~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~---~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 34 PLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKL---DVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHc---CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 455666666666654443 22467888888887 799999999999999999999999999999999876
Q ss_pred cc
Q 022271 170 EE 171 (300)
Q Consensus 170 ~E 171 (300)
+|
T Consensus 111 p~ 112 (241)
T PRK14024 111 PE 112 (241)
T ss_pred HH
Confidence 44
No 167
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.57 E-value=0.00064 Score=58.85 Aligned_cols=60 Identities=23% Similarity=0.424 Sum_probs=45.0
Q ss_pred hchHHHHHHhhCCCCCcE--EEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 120 ISLLPMVVDLIGDRDIPI--IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPV--iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
++|+.+..+.- .+|| +++||+.++.|++-++.+|+|||.+|+...-+. -+.....+|+++
T Consensus 196 ~dLv~~t~q~G---rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~---dP~k~a~aiVqA 257 (296)
T KOG1606|consen 196 YDLVKQTKQLG---RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSG---DPVKRARAIVQA 257 (296)
T ss_pred HHHHHHHHHcC---CCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCC---CHHHHHHHHHHH
Confidence 45666666543 5776 699999999999999999999999999887663 244444556664
No 168
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.0023 Score=56.33 Aligned_cols=90 Identities=22% Similarity=0.311 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec--------cC--hhchHHHHHHhhCCCCCcEEEccCCCCh
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ--------DG--LISLLPMVVDLIGDRDIPIIAAGGIVDA 146 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~--------~~--~~~ll~~v~~~~~~~~iPViaaGGI~~g 146 (300)
.+..+.++++|-.+.-.... ..-+.+++.+.|+..+-- .| .-..+.-+++.. ++|||..-||+++
T Consensus 120 l~Aae~Lv~eGF~VlPY~~d--D~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a---~VPviVDAGiG~p 194 (262)
T COG2022 120 LKAAEQLVKEGFVVLPYTTD--DPVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEA---DVPVIVDAGIGTP 194 (262)
T ss_pred HHHHHHHHhCCCEEeeccCC--CHHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhC---CCCEEEeCCCCCh
Confidence 34567788888777655432 345677888999886521 11 334566677766 8999999999999
Q ss_pred HHHHHHHHCCCcEEEeccccccCcc
Q 022271 147 RGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 147 ~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.|++.++.+|+|+|.+-|+...+..
T Consensus 195 SdAa~aMElG~DaVL~NTAiA~A~D 219 (262)
T COG2022 195 SDAAQAMELGADAVLLNTAIARAKD 219 (262)
T ss_pred hHHHHHHhcccceeehhhHhhccCC
Confidence 9999999999999999998876654
No 169
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.52 E-value=0.0018 Score=57.62 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=39.1
Q ss_pred hchHHHHHHhhCCCCCcEEEccCC--CChHH----HHHHHHCCCcEEEeccccccCc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGI--VDARG----YVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI--~~g~~----v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+..+.++++.. ++||+++||| .|.++ +..++..||+||.+|+.++..+
T Consensus 168 ~~~~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~ 221 (235)
T cd00958 168 AESFKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRP 221 (235)
T ss_pred HHHHHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCC
Confidence 45566777665 7999999998 56666 7888999999999999999665
No 170
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.50 E-value=0.00048 Score=61.97 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=64.2
Q ss_pred CCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 96 GEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 96 G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
..||.++.+..++.|...+|. .+...++.++++.+ ++||.+.|||++ +++..+|.+||+.|.+||..+..+.
T Consensus 37 ~~pp~~~A~~~~~~Ga~~lHvVDLg~~n~~~i~~i~~~~---~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~~ 112 (253)
T TIGR02129 37 DKPSSYYAKLYKDDGVKGCHVIMLGPNNDDAAKEALHAY---PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKGK 112 (253)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCcHHHHHHHHHhC---CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCCC
Confidence 346688888888999887775 23566777787776 799999999998 9999999999999999999887532
Q ss_pred cCCCHHHHHHHHc
Q 022271 172 SYAHPEYKRKLVE 184 (300)
Q Consensus 172 s~~~~~~k~~i~~ 184 (300)
..++.+++....
T Consensus 113 -i~~~~~~~i~~~ 124 (253)
T TIGR02129 113 -FDLKRLKEIVSL 124 (253)
T ss_pred -CCHHHHHHHHHH
Confidence 223444444444
No 171
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.48 E-value=0.0036 Score=55.44 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=79.7
Q ss_pred HHHHHHHHhCCceEEec--CCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC-C---
Q 022271 25 PELVAAVANAGGLGLLR--APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-Y--- 98 (300)
Q Consensus 25 ~~la~avs~aGglG~i~--~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~-~--- 98 (300)
.+.+.++.++|-+..+- .- ..+.+++.+..+++++++. .+++.++.++ .++.+.+.+++.|-+.... +
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K-~l~~~~~~~~a~~l~~l~~-~~gv~liINd----~~dlA~~~~adGVHLg~~d~~~~~ 102 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQY-GLDEATFQKQAEKLVPVIQ-EAGAAALIAG----DSRIAGRVKADGLHIEGNLAALAE 102 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCC-CCCHHHHHHHHHHHHHHHH-HhCCEEEEeC----HHHHHHHhCCCEEEECccccCHHH
Confidence 35555555655233331 11 2467788888888887653 2344455432 2444555555554332111 0
Q ss_pred -----------------cHHHHHHHHHCCCeEeec------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHH
Q 022271 99 -----------------SEELVLEAHSAGVKVVPQ------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 149 (300)
Q Consensus 99 -----------------~~~~v~~~~~~G~~v~~~------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v 149 (300)
..+-..+..+.|...+.. ...+.++..+++.+ ++||+|-||| +.+++
T Consensus 103 ~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~---~iPvvAIGGI-~~~n~ 178 (221)
T PRK06512 103 AIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI---EIPCIVQAGS-DLASA 178 (221)
T ss_pred HHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC---CCCEEEEeCC-CHHHH
Confidence 112122233445444321 01234566666665 7999999999 89999
Q ss_pred HHHHHCCCcEEEeccccccCc
Q 022271 150 VAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 150 ~aal~lGAdgV~~GT~fl~t~ 170 (300)
..++..||+||.+-+.++..+
T Consensus 179 ~~~~~~GA~giAvisai~~~~ 199 (221)
T PRK06512 179 VEVAETGAEFVALERAVFDAH 199 (221)
T ss_pred HHHHHhCCCEEEEhHHhhCCC
Confidence 999999999999999998654
No 172
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.47 E-value=0.0049 Score=54.98 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=48.9
Q ss_pred cHHHHHHHHHCCC-eEeec----cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 99 SEELVLEAHSAGV-KVVPQ----DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 99 ~~~~v~~~~~~G~-~v~~~----~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
+.++++++.+.|+ .++.+ +| .+.++.++.+. ..|+|++|||++-+|+.++..+|++||.+|+++.
T Consensus 148 ~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~----~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly 222 (232)
T PRK13586 148 VIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI----RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFY 222 (232)
T ss_pred HHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC----CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhh
Confidence 4577777777664 22222 22 45677777654 3569999999999999999999999999999975
No 173
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.46 E-value=0.0044 Score=55.67 Aligned_cols=139 Identities=13% Similarity=0.169 Sum_probs=87.2
Q ss_pred cHHHHHHHHhCCc--eEEecCCCC--CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc
Q 022271 24 GPELVAAVANAGG--LGLLRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS 99 (300)
Q Consensus 24 ~~~la~avs~aGg--lG~i~~~~~--~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~ 99 (300)
..++|....++|. +-++.-+.| -+. +.++++|+.++.|+-.+=+. .++.++......|++.|.+.....+
T Consensus 63 ~~~~A~~y~~~GA~aISVlTe~~~F~Gs~----~~l~~v~~~v~~PvL~KDFI--id~~QI~ea~~~GADavLLI~~~L~ 136 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLTDQSYFGGSL----EDLKSVSSELKIPVLRKDFI--LDEIQIREARAFGASAILLIVRILT 136 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCcCCCCH----HHHHHHHHhcCCCEEecccc--CCHHHHHHHHHcCCCEEEeEHhhCC
Confidence 3467777777665 333322212 133 45677777777787443222 2466777777789999876543332
Q ss_pred ----HHHHHHHHHCCCeEeec------------------------cChh----chHHHHHHhhCCCCCcEEEccCCCChH
Q 022271 100 ----EELVLEAHSAGVKVVPQ------------------------DGLI----SLLPMVVDLIGDRDIPIIAAGGIVDAR 147 (300)
Q Consensus 100 ----~~~v~~~~~~G~~v~~~------------------------~~~~----~ll~~v~~~~~~~~iPViaaGGI~~g~ 147 (300)
.++++..+..|..++.- ..++ ....++...+. .++.+|+.+||.+++
T Consensus 137 ~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip-~~~~~IsESGI~t~~ 215 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLP-PNIVKVGESGIESRS 215 (247)
T ss_pred HHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC-CCcEEEEcCCCCCHH
Confidence 23455556666665532 1122 22233333332 267899999999999
Q ss_pred HHHHHHHCCCcEEEeccccccCc
Q 022271 148 GYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 148 ~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
|+..+... +|||.+||.++.++
T Consensus 216 d~~~l~~~-~davLvG~~lm~~~ 237 (247)
T PRK13957 216 DLDKFRKL-VDAALIGTYFMEKK 237 (247)
T ss_pred HHHHHHHh-CCEEEECHHHhCCC
Confidence 99998876 99999999999874
No 174
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.45 E-value=0.00056 Score=64.79 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhcCC--cEEeeeecCC-----Cc----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 48 PDYLRDLIRKTRSLTER--PFGVGVVLAF-----PH----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~~~--P~gvnl~~~~-----~~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
...+.+.++++|+..+. |+++.+.... .. .+.++.+.+.+++.|.++.|..... +.. .... ...
T Consensus 187 ~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~-~~~---~~~~-~~~ 261 (353)
T cd02930 187 MRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEAR-VPT---IATS-VPR 261 (353)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCC-Ccc---cccc-CCc
Confidence 34566778888887654 4555544321 11 2456777788999999976632100 000 0000 000
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.....+..++++.+ ++||++.|+|.+.+++..++..| +|.|++|+.+++-++
T Consensus 262 ~~~~~~~~~ik~~v---~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~ 314 (353)
T cd02930 262 GAFAWATAKLKRAV---DIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPD 314 (353)
T ss_pred hhhHHHHHHHHHhC---CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCcc
Confidence 01234566788877 89999999999999999999976 999999999998754
No 175
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.45 E-value=0.006 Score=54.81 Aligned_cols=68 Identities=28% Similarity=0.167 Sum_probs=51.3
Q ss_pred cHHHHHHHHHCCCe-Eeec----cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHH---HCCCcEEEeccc
Q 022271 99 SEELVLEAHSAGVK-VVPQ----DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL---SLGAQGICLGTR 165 (300)
Q Consensus 99 ~~~~v~~~~~~G~~-v~~~----~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal---~lGAdgV~~GT~ 165 (300)
+.++++++.+.|+. ++.+ +| .+.++.++++.. ++|||++|||++-+|+.+.- ..|++||.+|++
T Consensus 151 ~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~---~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~A 227 (243)
T TIGR01919 151 LEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART---DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKL 227 (243)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC---CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHH
Confidence 45677777777643 2222 22 467888888876 79999999999999999864 469999999999
Q ss_pred cccC
Q 022271 166 FVAS 169 (300)
Q Consensus 166 fl~t 169 (300)
|.--
T Consensus 228 l~~g 231 (243)
T TIGR01919 228 LYAR 231 (243)
T ss_pred HHcC
Confidence 8543
No 176
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00019 Score=65.61 Aligned_cols=134 Identities=21% Similarity=0.200 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhh-cCC------cEEeeeecCCCc---HHHHHHHHHcCCcEEEEcC---CCCcHHHHHHHH-HCCCeEe
Q 022271 49 DYLRDLIRKTRSL-TER------PFGVGVVLAFPH---NENIKAILSEKVAVLQVSW---GEYSEELVLEAH-SAGVKVV 114 (300)
Q Consensus 49 ~~l~~~i~~~r~~-~~~------P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~---G~~~~~~v~~~~-~~G~~v~ 114 (300)
.+|++++.++... ..+ |+-+.+-+.... ++...++.+.+.+.++.+. ..|+.-.....+ +.|+.-.
T Consensus 231 ~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG 310 (398)
T KOG1436|consen 231 SDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSG 310 (398)
T ss_pred HHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCC
Confidence 4566666665332 122 444444332211 3455566677787776552 222222222222 2343333
Q ss_pred ec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 115 PQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 115 ~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
.- .-....++++...++. +||||..|||.+|.|+.+-+.+||+.||++|+|..--= .+-+..|+.+.+
T Consensus 311 ~plk~~st~~vR~mY~lt~g-~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp-~i~~kIk~El~~ 380 (398)
T KOG1436|consen 311 PPLKPISTNTVRAMYTLTRG-KIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGP-AIIEKIKRELSA 380 (398)
T ss_pred CccchhHHHHHHHHHHhccC-CCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCc-hhHHHHHHHHHH
Confidence 21 1134567777777654 79999999999999999999999999999999976422 234556666554
No 177
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.42 E-value=0.00043 Score=61.37 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=48.6
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMD 186 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~ 186 (300)
.+.++.++.+.+ ++||++.|||.+.+++.+++..|||.|++||..+.. ++.+++......
T Consensus 61 ~~~~i~~i~~~~---~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~d-----p~~~~~i~~~~g 120 (234)
T cd04732 61 NLELIEEIVKAV---GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKN-----PELVKELLKEYG 120 (234)
T ss_pred CHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhC-----hHHHHHHHHHcC
Confidence 456778888776 799999999999999999999999999999998854 344555555443
No 178
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.41 E-value=0.00049 Score=61.44 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=51.4
Q ss_pred cHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++++.+.+.|+..++. ......+.++.+.. ++|+++.|||.|.+++..++.+|||+|.+||..+-
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~---~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~ 110 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAV---GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVE 110 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHc---CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 455666666666555443 12345666666655 79999999999999999999999999999998875
Q ss_pred C
Q 022271 169 S 169 (300)
Q Consensus 169 t 169 (300)
.
T Consensus 111 ~ 111 (241)
T PRK13585 111 N 111 (241)
T ss_pred C
Confidence 4
No 179
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.41 E-value=0.0049 Score=54.22 Aligned_cols=136 Identities=22% Similarity=0.393 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
.+++.++.+ ||+..+--. +.+++.+ +.|+++|+. .+.-+|.+... +.+.++.+.+.|++++..- +. .++++
T Consensus 30 ~~i~~al~~-~Gi~~iEit-l~~~~~~-~~I~~l~~~~p~~~IGAGTVl---~~~~a~~a~~aGA~FivsP-~~-~~~vi 101 (212)
T PRK05718 30 VPLAKALVA-GGLPVLEVT-LRTPAAL-EAIRLIAKEVPEALIGAGTVL---NPEQLAQAIEAGAQFIVSP-GL-TPPLL 101 (212)
T ss_pred HHHHHHHHH-cCCCEEEEe-cCCccHH-HHHHHHHHHCCCCEEEEeecc---CHHHHHHHHHcCCCEEECC-CC-CHHHH
Confidence 356666555 557666432 4555443 566777654 34567777765 4578999999999998775 33 34777
Q ss_pred HHHHHCCCeEeec--------------------cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 104 LEAHSAGVKVVPQ--------------------DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 104 ~~~~~~G~~v~~~--------------------~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
+.+++.|+.+++. .+ -...+..++.-+ .++|+++.|||.- +.+..++..|+.
T Consensus 102 ~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~--p~~~~~ptGGV~~-~ni~~~l~ag~v 178 (212)
T PRK05718 102 KAAQEGPIPLIPGVSTPSELMLGMELGLRTFKFFPAEASGGVKMLKALAGPF--PDVRFCPTGGISP-ANYRDYLALPNV 178 (212)
T ss_pred HHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEccchhccCHHHHHHHhccC--CCCeEEEeCCCCH-HHHHHHHhCCCE
Confidence 7777777777743 11 122333333333 3699999999965 899999999954
Q ss_pred EEEeccccccCccc
Q 022271 159 GICLGTRFVASEES 172 (300)
Q Consensus 159 gV~~GT~fl~t~Es 172 (300)
+.+|..+|...+.
T Consensus 179 -~~vggs~L~~~~~ 191 (212)
T PRK05718 179 -LCIGGSWMVPKDA 191 (212)
T ss_pred -EEEEChHhCCcch
Confidence 4444555555443
No 180
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.37 E-value=0.0005 Score=61.16 Aligned_cols=46 Identities=13% Similarity=0.336 Sum_probs=41.3
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.+.++.++.+.+ ++||+++|||++-+|+.+++.+||++|.+||..+
T Consensus 61 n~~~i~~i~~~~---~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 61 NLDVVKNIIRET---GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred hHHHHHHHHhhC---CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 456777887765 7999999999999999999999999999999876
No 181
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=97.36 E-value=0.0024 Score=54.38 Aligned_cols=115 Identities=21% Similarity=0.306 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhcCCcEEeeeecC---CCcHHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCCCeEeec----c---
Q 022271 49 DYLRDLIRKTRSLTERPFGVGVVLA---FPHNENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQ----D--- 117 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~~P~gvnl~~~---~~~~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~--- 117 (300)
..+.+.++++++. +|..-||+=.- ..++.-++.+.+.. ++.|... -...++..++.|...+.. +
T Consensus 31 ~~l~~~v~~~~~~-gK~vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIIST----k~~~i~~Ak~~gl~tIqRiFliDS~a 105 (175)
T PF04309_consen 31 GNLKDIVKRLKAA-GKKVFVHIDLIEGLSRDEAGIEYLKEYGKPDGIIST----KSNLIKRAKKLGLLTIQRIFLIDSSA 105 (175)
T ss_dssp CCHHHHHHHHHHT-T-EEEEECCGEETB-SSHHHHHHHHHTT--SEEEES----SHHHHHHHHHTT-EEEEEEE-SSHHH
T ss_pred HHHHHHHHHHHHc-CCEEEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeC----CHHHHHHHHHcCCEEEEEeeeecHHH
Confidence 3466677777765 44454665332 24578889998876 9998875 246889999999888764 0
Q ss_pred ------------C-----hhchHHHHHHhhCC-CCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 118 ------------G-----LISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 118 ------------~-----~~~ll~~v~~~~~~-~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+ +--++|.+.+.+++ .++||||+|=|.|.+++.++|..||++|-...+=|+
T Consensus 106 l~~~~~~i~~~~PD~vEilPg~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 106 LETGIKQIEQSKPDAVEILPGVMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp HHHHHHHHHHHT-SEEEEESCCHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred HHHHHHHHhhcCCCEEEEchHHHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 0 11256777776543 479999999999999999999999999987765443
No 182
>PRK14057 epimerase; Provisional
Probab=97.30 E-value=0.0051 Score=55.40 Aligned_cols=110 Identities=11% Similarity=0.071 Sum_probs=74.9
Q ss_pred HHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--cHHHHHHHHHCCCe---------Eeec-------
Q 022271 55 IRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSAGVK---------VVPQ------- 116 (300)
Q Consensus 55 i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~--~~~~v~~~~~~G~~---------v~~~------- 116 (300)
++.+|+ +.|+=|-|+...| +.+++.+.+.|++.|+++.-.. +...+..+|+.|++ ....
T Consensus 69 i~~i~~--~~p~DvHLMV~~P-~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~ 145 (254)
T PRK14057 69 VGQLPQ--TFIKDVHLMVADQ-WTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPL 145 (254)
T ss_pred HHHhcc--CCCeeEEeeeCCH-HHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCH
Confidence 344444 4688888888654 5688999999999999986421 45778888988863 2211
Q ss_pred -------------------c---------ChhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 117 -------------------D---------GLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 117 -------------------~---------~~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
. ..+.-+.++++..++ .++-|-+.|||.. +-+..+..+|||.+++||.+
T Consensus 146 e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 146 DVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEEEEChHh
Confidence 0 012223333333322 2477999999954 48889999999999999986
Q ss_pred cc
Q 022271 167 VA 168 (300)
Q Consensus 167 l~ 168 (300)
..
T Consensus 225 F~ 226 (254)
T PRK14057 225 FR 226 (254)
T ss_pred hC
Confidence 54
No 183
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=97.25 E-value=0.0062 Score=57.84 Aligned_cols=149 Identities=12% Similarity=0.107 Sum_probs=95.0
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| +..||+.+||+. -. ...++.|..++|..-+++.....+.|++ .+. ..+.|+..+|.....
T Consensus 72 t~llG~~~~~Pv~iaP~g~-~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev----~~~--~~~~~~wfQlY~~~d 144 (367)
T TIGR02708 72 IEFLGHKLKSPFIMAPVAA-HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEI----SEA--LNGTPHWFQFYMSKD 144 (367)
T ss_pred eeeCCcccccccccCcHHH-hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHH----Hhh--cCCCceEEEEeccCC
Confidence 45677 578999999972 22 2578889999998877766433344433 222 135678888877543
Q ss_pred ---cHHHHHHHHHcCCcEEEEcCCCCc-----HHHH-------------HHHHHCCCeEee-------ccChhchHHHHH
Q 022271 76 ---HNENIKAILSEKVAVLQVSWGEYS-----EELV-------------LEAHSAGVKVVP-------QDGLISLLPMVV 127 (300)
Q Consensus 76 ---~~~~~~~~~e~g~~~i~~~~G~~~-----~~~v-------------~~~~~~G~~v~~-------~~~~~~ll~~v~ 127 (300)
..+.++.+.+.|.+.+.+....|. ++.- ..+......... ..-++..+.+++
T Consensus 145 r~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~ 224 (367)
T TIGR02708 145 DGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIA 224 (367)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHH
Confidence 256788888999998877543320 0000 000000000000 011345677777
Q ss_pred HhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 128 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 128 ~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
+.. ++||++= ||.+.+++..+...|+|+|+++
T Consensus 225 ~~~---~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS 256 (367)
T TIGR02708 225 GYS---GLPVYVK-GPQCPEDADRALKAGASGIWVT 256 (367)
T ss_pred Hhc---CCCEEEe-CCCCHHHHHHHHHcCcCEEEEC
Confidence 766 7999976 7999999999999999999884
No 184
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.23 E-value=0.0036 Score=55.16 Aligned_cols=144 Identities=21% Similarity=0.212 Sum_probs=82.6
Q ss_pred CcHHHHHHHHhCCceEEecCCC-CCCHHHHHHHHHHHHhhcCCcEEeeeecCC--------------------Cc-----
Q 022271 23 SGPELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAF--------------------PH----- 76 (300)
Q Consensus 23 s~~~la~avs~aGglG~i~~~~-~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~--------------------~~----- 76 (300)
-..+.+.+++++|-=+++-.|. ..+.+.+++.++++|+.++.|+-+ +..+. ++
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvil-fP~~~~~is~~aDavff~svLNS~n~~~i~ga 107 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVIL-FPGSPSGISPYADAVFFPSVLNSDNPYWIVGA 107 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEE-ecCChhccCccCCeEEEEEEecCCCcccccch
Confidence 3458888999999877764332 246688999999999888887632 11100 00
Q ss_pred -HHHHHHHHHcCCcEE-----EEcCC-----------CC--cHHHHHHH----HHCCCeEeec-----cChhchHHHHHH
Q 022271 77 -NENIKAILSEKVAVL-----QVSWG-----------EY--SEELVLEA----HSAGVKVVPQ-----DGLISLLPMVVD 128 (300)
Q Consensus 77 -~~~~~~~~e~g~~~i-----~~~~G-----------~~--~~~~v~~~----~~~G~~v~~~-----~~~~~ll~~v~~ 128 (300)
.+.+..+.+.+-.++ ++.-| +| .+++.... +--|.+++.. .+.-.....++.
T Consensus 108 q~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~ 187 (240)
T COG1646 108 QVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSR 187 (240)
T ss_pred hhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHH
Confidence 111222222222221 11111 11 12222211 1246666543 122233334444
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.++ ..|+|..|||.+++++.++..+|||.++.||.+--.
T Consensus 188 v~~--~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~ 226 (240)
T COG1646 188 VLS--DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEED 226 (240)
T ss_pred hhc--cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecC
Confidence 332 469999999999999999999999999999976433
No 185
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.22 E-value=0.0015 Score=61.96 Aligned_cols=116 Identities=14% Similarity=0.245 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCC---------Cc-H---HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAF---------PH-N---ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~---------~~-~---~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~ 114 (300)
-+.+.|+.+|+.. +.|+++.+-.+. .. + +.++.+.+.|++.|.++.|....+.. .|
T Consensus 196 f~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~-----~~---- 266 (361)
T cd04747 196 FAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEF-----EG---- 266 (361)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCc-----Cc----
Confidence 4667788888875 468898876421 11 2 33555677899999888763110000 01
Q ss_pred eccChhchHHHHHHhhCCCCCcEEEccCC------------------CChHHHHHHHHCC-CcEEEeccccccCcccCCC
Q 022271 115 PQDGLISLLPMVVDLIGDRDIPIIAAGGI------------------VDARGYVAALSLG-AQGICLGTRFVASEESYAH 175 (300)
Q Consensus 115 ~~~~~~~ll~~v~~~~~~~~iPViaaGGI------------------~~g~~v~aal~lG-AdgV~~GT~fl~t~Es~~~ 175 (300)
....+..++++.+ ++||++.|+| .|++++.+++.-| ||.|.+|+.+++-+
T Consensus 267 ---~~~~~~~~~k~~~---~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP----- 335 (361)
T cd04747 267 ---SELNLAGWTKKLT---GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDP----- 335 (361)
T ss_pred ---cchhHHHHHHHHc---CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCc-----
Confidence 1234556677776 7999999999 5999999999976 99999999999864
Q ss_pred HHHHHHHHcCC
Q 022271 176 PEYKRKLVEMD 186 (300)
Q Consensus 176 ~~~k~~i~~a~ 186 (300)
.+-+++.+..
T Consensus 336 -~~~~k~~~g~ 345 (361)
T cd04747 336 -AWVAKVREGR 345 (361)
T ss_pred -HHHHHHHcCC
Confidence 3555555543
No 186
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.21 E-value=0.0065 Score=62.23 Aligned_cols=149 Identities=14% Similarity=0.150 Sum_probs=91.8
Q ss_pred HHHHHHHHhCCc--eEEecCCCC--CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc-
Q 022271 25 PELVAAVANAGG--LGLLRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS- 99 (300)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~--~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~- 99 (300)
.+++....++|. +-++.-..| -+. +.++++|+.++.|+-.+=|. -++.++......|++.|.+-....+
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~----~~l~~vr~~v~~PvLrKDFI--id~~QI~ea~~~GADavLLI~~~L~~ 146 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFLGSL----DDFDKVRAAVHIPVLRKDFI--VTDYQIWEARAHGADLVLLIVAALDD 146 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCCCCH----HHHHHHHHhCCCCEEecccc--CCHHHHHHHHHcCCCEeehhHhhcCH
Confidence 467777677665 333322211 133 45677777778887443222 2466777888888888876443322
Q ss_pred ---HHHHHHHHHCCCeEeec------------------------cChh----chHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 100 ---EELVLEAHSAGVKVVPQ------------------------DGLI----SLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 100 ---~~~v~~~~~~G~~v~~~------------------------~~~~----~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
.++++..++.|..++.- ..++ ....++...+. .++.+|+.+||.+++|
T Consensus 147 ~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip-~~~~~VsESGI~~~~d 225 (695)
T PRK13802 147 AQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLP-DDVIKVAESGVFGAVE 225 (695)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCC-CCcEEEEcCCCCCHHH
Confidence 34455555666665532 0111 11222333332 2678999999999999
Q ss_pred HHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 149 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+..+...|+|+|.+|+.++.++. .....++.+
T Consensus 226 ~~~l~~~G~davLIGeslm~~~d--p~~~~~~l~ 257 (695)
T PRK13802 226 VEDYARAGADAVLVGEGVATADD--HELAVERLV 257 (695)
T ss_pred HHHHHHCCCCEEEECHHhhCCCC--HHHHHHHHH
Confidence 99999999999999999999853 233444444
No 187
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.21 E-value=0.0047 Score=55.52 Aligned_cols=140 Identities=17% Similarity=0.239 Sum_probs=80.4
Q ss_pred HHHHHHHHhCCc--eEEecCCCCC--CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--
Q 022271 25 PELVAAVANAGG--LGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY-- 98 (300)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~--~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~-- 98 (300)
.+++.+..++|. +-++.-..|. ++ +.++.+|+..+.|+-.+=|.. ++.++......|++.|.+-....
T Consensus 69 ~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~----e~L~~v~~~v~~PvL~KDFii--D~yQI~~Ar~~GADavLLI~~~L~~ 142 (254)
T COG0134 69 VEIAKAYEEGGAAAISVLTDPKYFQGSF----EDLRAVRAAVDLPVLRKDFII--DPYQIYEARAAGADAVLLIVAALDD 142 (254)
T ss_pred HHHHHHHHHhCCeEEEEecCccccCCCH----HHHHHHHHhcCCCeeeccCCC--CHHHHHHHHHcCcccHHHHHHhcCH
Confidence 467777777664 3333322221 33 356778888888875543332 23444445555555442211000
Q ss_pred --cHHH--------------------HHHHHHCCCeEeec----cChh----chHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 99 --SEEL--------------------VLEAHSAGVKVVPQ----DGLI----SLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 99 --~~~~--------------------v~~~~~~G~~v~~~----~~~~----~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
.+++ +++..+.|.+++.. ..++ ....++...+. .++.+|.-+||.+++|
T Consensus 143 ~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p-~~~~~IsESGI~~~~d 221 (254)
T COG0134 143 EQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIP-KDVILISESGISTPED 221 (254)
T ss_pred HHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCC-CCcEEEecCCCCCHHH
Confidence 1222 33333455555543 1111 12222333332 2578999999999999
Q ss_pred HHHHHHCCCcEEEeccccccCcc
Q 022271 149 YVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t~E 171 (300)
+......||+|+.+||.++.++.
T Consensus 222 v~~l~~~ga~a~LVG~slM~~~~ 244 (254)
T COG0134 222 VRRLAKAGADAFLVGEALMRADD 244 (254)
T ss_pred HHHHHHcCCCEEEecHHHhcCCC
Confidence 99999999999999999998853
No 188
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.20 E-value=0.0011 Score=59.29 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=53.9
Q ss_pred cHHHHHHHHH-CCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 99 SEELVLEAHS-AGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 99 ~~~~v~~~~~-~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
|.+..+.+.+ .|+.-+|. ...+.++.++.+.+ ++||.+.|||.+-+++.+++.+||+-|.+||..+
T Consensus 33 p~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~---~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 33 AEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLT---TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred HHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhc---CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 4556666666 56555443 12466788888766 7999999999999999999999999999999888
Q ss_pred cCc
Q 022271 168 ASE 170 (300)
Q Consensus 168 ~t~ 170 (300)
-.+
T Consensus 110 ~~~ 112 (234)
T PRK13587 110 QDT 112 (234)
T ss_pred cCH
Confidence 653
No 189
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=97.20 E-value=0.0041 Score=59.07 Aligned_cols=110 Identities=27% Similarity=0.386 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcC--CcEEeeeecCCC------c----HHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCCCeEeecc
Q 022271 51 LRDLIRKTRSLTE--RPFGVGVVLAFP------H----NENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQD 117 (300)
Q Consensus 51 l~~~i~~~r~~~~--~P~gvnl~~~~~------~----~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~ 117 (300)
+.+.++.+|+..+ .|+++-|..... . .+.++.+.+.| ++.+.++.|.... .+.......
T Consensus 202 ~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~--------~~~~~~~~~ 273 (363)
T COG1902 202 LLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYER--------GGTITVSGP 273 (363)
T ss_pred HHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccC--------CCCcccccc
Confidence 5567788888764 478887776433 1 34577777888 6999887654311 000000001
Q ss_pred C-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 118 G-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 118 ~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
+ ...+...++..+ .+|||++|+|.+++.+.++++-| ||.|-||+.|++-++
T Consensus 274 ~~~~~~a~~i~~~~---~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~ 326 (363)
T COG1902 274 GYQVEFAARIKKAV---RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPD 326 (363)
T ss_pred chhHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCcc
Confidence 1 223333455555 69999999999999999999998 999999999998643
No 190
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.19 E-value=0.00045 Score=61.25 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=81.0
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC----------------
Q 022271 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF---------------- 74 (300)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~---------------- 74 (300)
|=....|=- ....+....++++|.=.++-.|. .+-..+++.++.+++.++.|+-. ++..
T Consensus 10 h~~liDPdK--~~~~~~~~~~~~~gtDai~VGGS-~~~~~~d~vv~~ik~~~~lPvil--fPg~~~~vs~~aDail~~sv 84 (230)
T PF01884_consen 10 HATLIDPDK--PNPEEALEAACESGTDAIIVGGS-DTGVTLDNVVALIKRVTDLPVIL--FPGSPSQVSPGADAILFPSV 84 (230)
T ss_dssp EEEEE-TTS--S-HHHHHHHHHCTT-SEEEEE-S-THCHHHHHHHHHHHHHSSS-EEE--ETSTCCG--TTSSEEEEEEE
T ss_pred eEEEECCCC--CCcHHHHHHHHhcCCCEEEECCC-CCccchHHHHHHHHhcCCCCEEE--eCCChhhcCcCCCEEEEEEE
Confidence 444456743 45566666678888766665432 22446667777788778888632 2211
Q ss_pred -----Cc---HH---HHHHHHHcCCcEEE-----EcCCC-----------C--cHHHHHHH----HHCCCeEeec---cC
Q 022271 75 -----PH---NE---NIKAILSEKVAVLQ-----VSWGE-----------Y--SEELVLEA----HSAGVKVVPQ---DG 118 (300)
Q Consensus 75 -----~~---~~---~~~~~~e~g~~~i~-----~~~G~-----------~--~~~~v~~~----~~~G~~v~~~---~~ 118 (300)
++ .. .+..+.+.+-.++. +.-|. | .++++... +-.|.+++.. -|
T Consensus 85 lNs~n~~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYLEaGSG 164 (230)
T PF01884_consen 85 LNSRNPYWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYLEAGSG 164 (230)
T ss_dssp TTBSSTTTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEEE--TT
T ss_pred ecCCCcchHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 10 12 22333333444442 22221 1 11222211 1245555543 12
Q ss_pred hhchH-HHHHHhhCC-CCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLL-PMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll-~~v~~~~~~-~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
...-+ ++++++++. .++|+|..|||.|.+++.+++..|||.|++||.|--.
T Consensus 165 a~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~ 217 (230)
T PF01884_consen 165 AYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED 217 (230)
T ss_dssp SSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH
T ss_pred CCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc
Confidence 33334 333333211 3899999999999999999999999999999998544
No 191
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0027 Score=55.84 Aligned_cols=62 Identities=29% Similarity=0.372 Sum_probs=52.2
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
.+.|+..+++.+ ++||||+||-++.++..+++..| ||++...+-|=...= .-...|+.+.+.
T Consensus 187 Dl~l~~~v~~~v---~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~--~i~evK~yL~~~ 249 (256)
T COG0107 187 DLELTRAVREAV---NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEI--TIGEVKEYLAEQ 249 (256)
T ss_pred CHHHHHHHHHhC---CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcc--cHHHHHHHHHHc
Confidence 577999999998 89999999999999999999988 999999999877642 345677776653
No 192
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.19 E-value=0.0023 Score=61.05 Aligned_cols=120 Identities=13% Similarity=0.204 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhcCC--cEEeeeecCC--------CcHH---HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 50 YLRDLIRKTRSLTER--PFGVGVVLAF--------PHNE---NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~--P~gvnl~~~~--------~~~~---~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
-+.+.++.+|+..+. |+++.+.... ..++ .++.+ +..++++.++.|.... ... -......
T Consensus 202 f~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l-~~~~D~i~vs~g~~~~-~~~-----~~~~~~~ 274 (370)
T cd02929 202 FWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEML-DELPDLWDVNVGDWAN-DGE-----DSRFYPE 274 (370)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHH-HhhCCEEEecCCCccc-ccc-----ccccCCc
Confidence 466778888887654 4555554321 1122 23333 3348999888775311 000 0000000
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
.-...+..++++.+ ++|||+.|||.+++++.+++..| ||.|.+|+.|++-+ .+-+++.+.
T Consensus 275 ~~~~~~~~~ik~~~---~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP------~l~~k~~~g 335 (370)
T cd02929 275 GHQEPYIKFVKQVT---SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADP------FLPKKIREG 335 (370)
T ss_pred cccHHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCc------hHHHHHHcC
Confidence 01245666777776 79999999999999999999987 99999999999874 355555543
No 193
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.18 E-value=0.0049 Score=54.15 Aligned_cols=135 Identities=22% Similarity=0.353 Sum_probs=78.3
Q ss_pred HHHHHHHHhCCceEEec--CCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcH--
Q 022271 25 PELVAAVANAGGLGLLR--APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE-- 100 (300)
Q Consensus 25 ~~la~avs~aGglG~i~--~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~-- 100 (300)
.+.+.+.-+.| +-.+- .-+ .+.++..+..++++++..+ +++-++.+ +.++.+++.+++.|-+.....+.
T Consensus 24 ~~~ve~al~~G-v~~vQlR~K~-~~~~~~~~~a~~~~~lc~~-~~v~liIN----d~~dlA~~~~AdGVHlGq~D~~~~~ 96 (211)
T COG0352 24 LEWVEAALKGG-VTAVQLREKD-LSDEEYLALAEKLRALCQK-YGVPLIIN----DRVDLALAVGADGVHLGQDDMPLAE 96 (211)
T ss_pred HHHHHHHHhCC-CeEEEEecCC-CChHHHHHHHHHHHHHHHH-hCCeEEec----CcHHHHHhCCCCEEEcCCcccchHH
Confidence 45555555545 44441 111 2344445556666665432 33444443 23566666666666554332122
Q ss_pred ------------------HHHHHHHHCCCeEeec-------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHH
Q 022271 101 ------------------ELVLEAHSAGVKVVPQ-------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 149 (300)
Q Consensus 101 ------------------~~v~~~~~~G~~v~~~-------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v 149 (300)
+-..+..+.|...+.. ...+..+..+++.. .+|++|-||| |.+.+
T Consensus 97 ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~---~iP~vAIGGi-~~~nv 172 (211)
T COG0352 97 ARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV---NIPVVAIGGI-NLENV 172 (211)
T ss_pred HHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC---CCCEEEEcCC-CHHHH
Confidence 2222333334333321 11345666777665 6999999999 77899
Q ss_pred HHHHHCCCcEEEeccccccCc
Q 022271 150 VAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 150 ~aal~lGAdgV~~GT~fl~t~ 170 (300)
...+..||+||.+-|+++.+.
T Consensus 173 ~~v~~~Ga~gVAvvsai~~a~ 193 (211)
T COG0352 173 PEVLEAGADGVAVVSAITSAA 193 (211)
T ss_pred HHHHHhCCCeEEehhHhhcCC
Confidence 999999999999999998753
No 194
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.18 E-value=0.0078 Score=56.82 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=38.7
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+..+..+.+.. ++||+|-|||. .+.+..++..||+||.+++.++.+
T Consensus 283 le~l~~~~~~~---~iPv~AiGGI~-~~ni~~l~~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 283 LEYLKYAAKEA---PIPWFAIGGID-KSNIPEVLQAGAKRVAVVRAIMGA 328 (347)
T ss_pred HHHHHHHHHhC---CCCEEEECCCC-HHHHHHHHHcCCcEEEEeHHHhCC
Confidence 45566666554 79999999995 889999999999999999999864
No 195
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.16 E-value=0.0017 Score=67.60 Aligned_cols=111 Identities=21% Similarity=0.229 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCC--C----c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccC
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAF--P----H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDG 118 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~--~----~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~ 118 (300)
-+.+.++.+|+.. +.|+++.+-... + . .+.++.+.+.|++.|.++.|........ ..+ ..-
T Consensus 603 ~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~---~~~-----~~~ 674 (765)
T PRK08255 603 YPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKP---VYG-----RMY 674 (765)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCC---CcC-----ccc
Confidence 4556778888864 468998877532 1 1 2456777788999999987653110000 000 001
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
...+..++++.+ ++||++.|+|.+++++..++..| ||.|.+|+.|++-++
T Consensus 675 ~~~~~~~ik~~~---~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~ 725 (765)
T PRK08255 675 QTPFADRIRNEA---GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPA 725 (765)
T ss_pred cHHHHHHHHHHc---CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCcc
Confidence 123456677776 79999999999999999999965 999999999999865
No 196
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.15 E-value=0.005 Score=58.34 Aligned_cols=147 Identities=20% Similarity=0.176 Sum_probs=92.3
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| ...||+.+|++. -. ...++.|..++|..=+++.....+.|++.+ ..+.|+..+|...+.
T Consensus 56 ttllG~~~~~P~~iaP~g~-~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~siEeva~-------a~~~~~wfQLY~~~r 127 (361)
T cd04736 56 ASLFGKVWSAPLVIAPTGL-NGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVAR-------QADGDLWFQLYVVHR 127 (361)
T ss_pred eeECCccccccccccHHHH-HhccCCcHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHh-------hcCCCeEEEEEecCH
Confidence 45677 567999999862 21 247788888888776676543345554432 235688899988542
Q ss_pred --cHHHHHHHHHcCCcEEEEcCCCC----------------cH----HHHHHH---------HHCCCeEeec--------
Q 022271 76 --HNENIKAILSEKVAVLQVSWGEY----------------SE----ELVLEA---------HSAGVKVVPQ-------- 116 (300)
Q Consensus 76 --~~~~~~~~~e~g~~~i~~~~G~~----------------~~----~~v~~~---------~~~G~~v~~~-------- 116 (300)
.++.++.+.+.|++.+.++...| ++ .+.+-+ ...|..-+..
T Consensus 128 ~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~ 207 (361)
T cd04736 128 ELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAID 207 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccc
Confidence 14567888889999987653221 10 001100 0001000000
Q ss_pred ------------c--ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 117 ------------D--GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 117 ------------~--~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
. -++..+..+++.. +.|||..| |.+.+++..+..+|+|+|.+
T Consensus 208 ~~~~~~~~~~~~d~~~~w~~i~~ir~~~---~~pviiKg-V~~~eda~~a~~~G~d~I~V 263 (361)
T cd04736 208 VEVQAALMSRQMDASFNWQDLRWLRDLW---PHKLLVKG-IVTAEDAKRCIELGADGVIL 263 (361)
T ss_pred hhhHHHHHHhccCCcCCHHHHHHHHHhC---CCCEEEec-CCCHHHHHHHHHCCcCEEEE
Confidence 0 1334566677665 78999985 99999999999999999998
No 197
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.15 E-value=0.026 Score=48.14 Aligned_cols=128 Identities=20% Similarity=0.186 Sum_probs=72.0
Q ss_pred cHHHHHHHHhCCceEEec--CCCCCCHHHHHHHHHHHHhhc---CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC
Q 022271 24 GPELVAAVANAGGLGLLR--APDWEAPDYLRDLIRKTRSLT---ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY 98 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~--~~~~~~~~~l~~~i~~~r~~~---~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~ 98 (300)
..+.+.++.++| +..+- .. ..+.+++.+.+++++++. +.++-+|= ..+.+.+.+++.|-+.....
T Consensus 14 ~~~~l~~~~~~g-v~~v~lR~k-~~~~~~~~~~a~~l~~~~~~~~~~liin~--------~~~la~~~~~dGvHl~~~~~ 83 (180)
T PF02581_consen 14 FLEQLEAALAAG-VDLVQLREK-DLSDEELLELARRLAELCQKYGVPLIIND--------RVDLALELGADGVHLGQSDL 83 (180)
T ss_dssp HHHHHHHHHHTT--SEEEEE-S-SS-HHHHHHHHHHHHHHHHHTTGCEEEES---------HHHHHHCT-SEEEEBTTSS
T ss_pred HHHHHHHHHHCC-CcEEEEcCC-CCCccHHHHHHHHHHHHhhcceEEEEecC--------CHHHHHhcCCCEEEeccccc
Confidence 345555666666 55542 21 146777888888777653 34454442 34555556666665543221
Q ss_pred cHH--------------------HHHHHHHCCCeEeec-------------cChhchHHHHHHhhCCCCCcEEEccCCCC
Q 022271 99 SEE--------------------LVLEAHSAGVKVVPQ-------------DGLISLLPMVVDLIGDRDIPIIAAGGIVD 145 (300)
Q Consensus 99 ~~~--------------------~v~~~~~~G~~v~~~-------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~ 145 (300)
+.. -+.++.+.|...+.. .--+..+.++.+.. ++||+|-||| |
T Consensus 84 ~~~~~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlGGI-~ 159 (180)
T PF02581_consen 84 PPAEARKLLGPDKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALGGI-T 159 (180)
T ss_dssp SHHHHHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEESS---
T ss_pred chHHhhhhcccceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC---CCCEEEEcCC-C
Confidence 111 133334444443321 01245666777766 7999999999 7
Q ss_pred hHHHHHHHHCCCcEEEeccc
Q 022271 146 ARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 146 g~~v~aal~lGAdgV~~GT~ 165 (300)
.+++..+..+||+||.+-++
T Consensus 160 ~~~i~~l~~~Ga~gvAvi~a 179 (180)
T PF02581_consen 160 PENIPELREAGADGVAVISA 179 (180)
T ss_dssp TTTHHHHHHTT-SEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEee
Confidence 88999999999999988653
No 198
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.15 E-value=0.0014 Score=58.31 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=52.8
Q ss_pred cHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++++.+.+.|..-++. ...+.++.++++.+ ++||+++|||.+-+++..++..|+++|++||..+.
T Consensus 32 p~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~---~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 32 PVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEEC---FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 456666666666543321 12456778888776 79999999999999999999999999999998876
Q ss_pred Cc
Q 022271 169 SE 170 (300)
Q Consensus 169 t~ 170 (300)
.+
T Consensus 109 ~~ 110 (232)
T TIGR03572 109 NP 110 (232)
T ss_pred CH
Confidence 53
No 199
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.13 E-value=0.0015 Score=57.82 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=58.6
Q ss_pred cHHHHHHHHHCCCeEeec---c-------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ---D-------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---~-------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++++...+.|+.-++. . ..+.++.++.+.+ ++|+...|||.+.+++..++.+||+.|++||..+-
T Consensus 30 p~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~---~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 30 PVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRET---GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 455666666665543332 1 1356788888776 79999999999999999999999999999999885
Q ss_pred CcccCCCHHHHHHHHcCC
Q 022271 169 SEESYAHPEYKRKLVEMD 186 (300)
Q Consensus 169 t~Es~~~~~~k~~i~~a~ 186 (300)
. ++.+++......
T Consensus 107 d-----~~~~~~~~~~~g 119 (230)
T TIGR00007 107 N-----PDLVKELLKEYG 119 (230)
T ss_pred C-----HHHHHHHHHHhC
Confidence 3 344666555543
No 200
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.10 E-value=0.0075 Score=57.05 Aligned_cols=149 Identities=13% Similarity=0.173 Sum_probs=93.7
Q ss_pred ccccC--CccceecCCCCCCC-C----cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc
Q 022271 4 RGMLG--FEYGIVQAPLGPDI-S----GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH 76 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~-s----~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~ 76 (300)
+++|| +..|++.+||+..- . ...++.+..++|..-+++.....+.|++.+ .. .+.|..+++..+...
T Consensus 64 t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~----~~--~~~~~wfQlY~~~d~ 137 (351)
T cd04737 64 TELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAK----AS--NGGPKWFQLYMSKDD 137 (351)
T ss_pred eEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHH----hc--CCCCeEEEEeecCCH
Confidence 45677 57799999997311 1 247888888999777776643345554422 21 145788888876542
Q ss_pred ---HHHHHHHHHcCCcEEEEcCCCCc-----HHHHHHH---------HHC--CCeE----------eeccChhchHHHHH
Q 022271 77 ---NENIKAILSEKVAVLQVSWGEYS-----EELVLEA---------HSA--GVKV----------VPQDGLISLLPMVV 127 (300)
Q Consensus 77 ---~~~~~~~~e~g~~~i~~~~G~~~-----~~~v~~~---------~~~--G~~v----------~~~~~~~~ll~~v~ 127 (300)
++.++.+.+.|++.+.++...|. ++.-... ... +... +...-+...+..++
T Consensus 138 ~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr 217 (351)
T cd04737 138 GFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIA 217 (351)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHH
Confidence 56788888999998877654321 1100000 000 0000 00011345566777
Q ss_pred HhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 128 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 128 ~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
+.. ++||++= ||.+++++..+...|+|+|.+
T Consensus 218 ~~~---~~PvivK-gv~~~~dA~~a~~~G~d~I~v 248 (351)
T cd04737 218 KIS---GLPVIVK-GIQSPEDADVAINAGADGIWV 248 (351)
T ss_pred HHh---CCcEEEe-cCCCHHHHHHHHHcCCCEEEE
Confidence 766 7999977 589999999999999999999
No 201
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.07 E-value=0.0017 Score=58.84 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=55.2
Q ss_pred CcHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 98 YSEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 98 ~~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.|.++++.+.+.|+.-++. ...+.++.++.+.. ++||++.|||.+-+++.+++.+|+++|.+||..+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~---~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~ 107 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASEC---FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAAL 107 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhC---CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHh
Confidence 3567778887877654432 12467888888876 7999999999999999999999999999998766
Q ss_pred cC
Q 022271 168 AS 169 (300)
Q Consensus 168 ~t 169 (300)
-.
T Consensus 108 ~~ 109 (258)
T PRK01033 108 ED 109 (258)
T ss_pred cC
Confidence 44
No 202
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=97.05 E-value=0.012 Score=52.40 Aligned_cols=111 Identities=9% Similarity=-0.018 Sum_probs=78.5
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--cHHHHHHHHHCCC--eEeec-------------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSAGV--KVVPQ------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~--~~~~v~~~~~~G~--~v~~~------------- 116 (300)
.++.+|+ +.|+=|-|+...| +.+++.+.++|++.|+++.-.. +...++.+|+.|. +....
T Consensus 61 ~i~~i~~--~~~~DvHLMv~~P-~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~ 137 (228)
T PRK08091 61 AIKQFPT--HCFKDVHLMVRDQ-FEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPY 137 (228)
T ss_pred HHHHhCC--CCCEEEEeccCCH-HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHH
Confidence 3455553 6789899988764 5689999999999999987421 4578888999998 65432
Q ss_pred -------------c---------ChhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 -------------D---------GLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 -------------~---------~~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
. ..+.-+.++++..++ .++-|-+.|||. .+-+..+...|||.+++||.+..
T Consensus 138 l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSalF~ 212 (228)
T PRK08091 138 LDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSALFS 212 (228)
T ss_pred HhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhhhC
Confidence 0 122233344443322 246799999996 66888999999999999998543
No 203
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.05 E-value=0.0011 Score=58.96 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=53.5
Q ss_pred cHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++.+.+.+.|+.-++. ...+.++.++.+.+ .+||.+.|||++.+++..++.+||+-|.+||..+.
T Consensus 31 P~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~---~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 31 PVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKET---GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHS---SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcC---CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 456677776777766654 12456777888776 79999999999999999999999999999999886
Q ss_pred Ccc
Q 022271 169 SEE 171 (300)
Q Consensus 169 t~E 171 (300)
.+|
T Consensus 108 ~~~ 110 (229)
T PF00977_consen 108 DPE 110 (229)
T ss_dssp CCH
T ss_pred chh
Confidence 643
No 204
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.04 E-value=0.01 Score=56.66 Aligned_cols=149 Identities=15% Similarity=0.150 Sum_probs=93.6
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| ...|+..+|++ ... ...++.|..++|..-+++.....+.|++. +. ..+.|+..+|..+..
T Consensus 77 t~llG~~~~~P~~iAP~g-~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa----~~--~~~~~~wfQlY~~~d 149 (383)
T cd03332 77 VELFGRTLAAPLLLAPIG-VQELFHPDAELATARAAAELGVPYILSTASSSSIEDVA----AA--AGDAPRWFQLYWPKD 149 (383)
T ss_pred eeeCCccccccceechHH-HHHhcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHH----hh--cCCCCcEEEeeCCCC
Confidence 45677 57799999997 222 34788888899988888753334554432 22 134578888887654
Q ss_pred c---HHHHHHHHHcCCcEEEEcCCCC---------------cH--HHHHH-HHH--------CCC-eE------------
Q 022271 76 H---NENIKAILSEKVAVLQVSWGEY---------------SE--ELVLE-AHS--------AGV-KV------------ 113 (300)
Q Consensus 76 ~---~~~~~~~~e~g~~~i~~~~G~~---------------~~--~~v~~-~~~--------~G~-~v------------ 113 (300)
. .+.++.+.+.|++.+.++...| .. ..+.. +.. .+. .-
T Consensus 150 r~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (383)
T cd03332 150 DDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVA 229 (383)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhHH
Confidence 2 5678888899999987753221 10 00000 000 000 00
Q ss_pred ------eeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 114 ------VPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 114 ------~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
+...-++.-+..+++.. ++|||+- ||.+.+|+..+..+|+|+|.+.
T Consensus 230 ~~~~~~~~~~~tW~~i~~lr~~~---~~pvivK-gV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 230 RFVSVFSGPSLTWEDLAFLREWT---DLPIVLK-GILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred HHHHhcCCCCCCHHHHHHHHHhc---CCCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence 00011345566666665 7998876 8899999999999999999984
No 205
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.02 E-value=0.028 Score=49.27 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=61.3
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+.+++++| .+||+... -+.++++.++..+.+... .--|.++.+.+.++..+.+.+.++++|.++
T Consensus 7 Git~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~~---~~~VgVf~~~~~~~i~~~~~~~~~d~vQLH- 82 (207)
T PRK13958 7 GFTTIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPNH---IDKVCVVVNPDLTTIEHILSNTSINTIQLH- 82 (207)
T ss_pred CCCcHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCCC---CCEEEEEeCCCHHHHHHHHHhCCCCEEEEC-
Confidence 678888777788877 59998422 245677666655554321 113667777666777777778999999999
Q ss_pred CCCcHHHHHHHHHC--CCeEee
Q 022271 96 GEYSEELVLEAHSA--GVKVVP 115 (300)
Q Consensus 96 G~~~~~~v~~~~~~--G~~v~~ 115 (300)
|..+.+.++.+++. ++.++.
T Consensus 83 G~e~~~~~~~l~~~~~~~~iik 104 (207)
T PRK13958 83 GTESIDFIQEIKKKYSSIKIIK 104 (207)
T ss_pred CCCCHHHHHHHhhcCCCceEEE
Confidence 44467788888753 356554
No 206
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.01 E-value=0.018 Score=49.69 Aligned_cols=153 Identities=20% Similarity=0.309 Sum_probs=95.0
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCceEEecCCC-C---------------------CCHHHHHHHHHHHHhh-cCCcEE
Q 022271 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-W---------------------EAPDYLRDLIRKTRSL-TERPFG 67 (300)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-~---------------------~~~~~l~~~i~~~r~~-~~~P~g 67 (300)
.|.|-++-- .+++-.=.-..-+.||.+.|-.+- | .+.+++.+.++++|.. ..-|+.
T Consensus 21 vtfiTaG~P-~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIi 99 (268)
T KOG4175|consen 21 VTFITAGDP-DVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPII 99 (268)
T ss_pred EEEEecCCC-cHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCccccee
Confidence 455555553 455443333445667777663210 1 2334555566666554 234443
Q ss_pred e----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHH---HHHHHHCCCeEeec------------------------
Q 022271 68 V----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSEEL---VLEAHSAGVKVVPQ------------------------ 116 (300)
Q Consensus 68 v----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~---v~~~~~~G~~v~~~------------------------ 116 (300)
. |=+.....+..++.+.+.|+..+.+- ..||++. -.+++++|+..+..
T Consensus 100 LmgYYNPIl~yG~e~~iq~ak~aGanGfiiv-DlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvV 178 (268)
T KOG4175|consen 100 LMGYYNPILRYGVENYIQVAKNAGANGFIIV-DLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVV 178 (268)
T ss_pred eeecccHHHhhhHHHHHHHHHhcCCCceEec-cCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEE
Confidence 2 11112234677888888888776665 4566543 34566788877653
Q ss_pred -----cC--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 -----DG--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 -----~~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.| +-+|+.+|+++.+ +.|+-..-||++++.....=.. ||||++|+..+-
T Consensus 179 SrmG~TG~~~svn~~l~~L~qrvrk~t~--dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 179 SRMGVTGTRESVNEKLQSLLQRVRKATG--DTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVK 240 (268)
T ss_pred EeccccccHHHHHHHHHHHHHHHHHhcC--CCceeEeeccCCHHHHHhhhhh-ccceEecHHHHH
Confidence 01 3357788888764 7999999999999998887777 999999998754
No 207
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.96 E-value=0.003 Score=56.78 Aligned_cols=69 Identities=22% Similarity=0.138 Sum_probs=55.4
Q ss_pred CcHHHHHHHHHCCCeEeec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 98 YSEELVLEAHSAGVKVVPQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 98 ~~~~~v~~~~~~G~~v~~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+|.+......+.|...+|. .....++.++.+.+ .+||...|||+|.+++..+|.+||+-|.+||..+-
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~g~~~n~~~i~~i~~~~---~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~ 108 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAFGGGNNEMMLEEVVKLL---VVVEELSGGRRDDSSLRAALTGGRARVNGGTAALE 108 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCCCCcchHHHHHHHHHHC---CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 4556666667777766654 12456788888776 79999999999999999999999999999998775
Q ss_pred C
Q 022271 169 S 169 (300)
Q Consensus 169 t 169 (300)
.
T Consensus 109 ~ 109 (243)
T TIGR01919 109 N 109 (243)
T ss_pred C
Confidence 4
No 208
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.95 E-value=0.01 Score=51.97 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=70.8
Q ss_pred HHHHHHHhhcCCcEEeeee-cCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec--c---------
Q 022271 53 DLIRKTRSLTERPFGVGVV-LAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ--D--------- 117 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~-~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~--~--------- 117 (300)
+.++++|+.+..|+=+.++ ...+....++.+.+.|++.|+++.-.. ....++.+++.|..++.. .
T Consensus 45 ~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~ 124 (215)
T PRK13813 45 GIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFI 124 (215)
T ss_pred HHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCH
Confidence 4567777766444445554 222223445788899999999986321 245667778888887542 0
Q ss_pred --------------C---------hhchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccC
Q 022271 118 --------------G---------LISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 118 --------------~---------~~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t 169 (300)
| .+.-+.++++... .++ .+..|||.... .+..++..|||.+++|+....+
T Consensus 125 ~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~-~~~-~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~ 198 (215)
T PRK13813 125 QPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLG-DEL-KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNA 198 (215)
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcC-CCc-EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC
Confidence 0 1112223433331 122 34889999863 5888999999999999876544
No 209
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=96.92 E-value=0.011 Score=51.33 Aligned_cols=137 Identities=27% Similarity=0.392 Sum_probs=81.7
Q ss_pred CCCcHHHHHHHHhCCc--eEEecCCC---CCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAGG--LGLLRAPD---WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aGg--lG~i~~~~---~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++.+=+..++++|. +|++.... +.++++.++ +.+... |.-|.++.+.+..+.++.+.+.++++|-++
T Consensus 5 Gi~~~~da~~~~~~g~d~~Gfi~~~~S~R~v~~~~a~~----l~~~~~-~~~VgVf~~~~~~~I~~~~~~~~ld~vQLH- 78 (197)
T PF00697_consen 5 GITRPEDARLAAELGADYLGFIFYPKSPRYVSPDQARE----LVSAVP-PKIVGVFVNQSPEEILEIVEELGLDVVQLH- 78 (197)
T ss_dssp ---SHHHHHHHHHHTSSEEEEE--TTCTTB--HHHHHH----HHCCSS-SSEEEEESSS-HHHHHHHHHHCTESEEEE--
T ss_pred CCCcHHHHHHHHHcCCCEEeeecCCCCCCccCHHHHHH----HHHhcC-CCEEEEEcCCCHHHHHHHHHHcCCCEEEEC-
Confidence 5667766667777776 99986532 234444333 333333 346888888877888888999999999999
Q ss_pred CCCcHHHHHHHHHCCCeEeec------------------------------cC---hhchHHHHHHhhCCCCCcEEEccC
Q 022271 96 GEYSEELVLEAHSAGVKVVPQ------------------------------DG---LISLLPMVVDLIGDRDIPIIAAGG 142 (300)
Q Consensus 96 G~~~~~~v~~~~~~G~~v~~~------------------------------~~---~~~ll~~v~~~~~~~~iPViaaGG 142 (300)
|..+.++++.++ .+..++.. .| .+++++++.+.. .+.|++.|||
T Consensus 79 G~e~~e~~~~l~-~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~~~dw~~~~~~~~~~--~~~p~iLAGG 155 (197)
T PF00697_consen 79 GDESPEYIKLLR-AGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGKTFDWSLLKKIVESY--SPKPVILAGG 155 (197)
T ss_dssp SGG-HHHHHHHH-TTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS---GGGGCCCHHT---GTSTEEEESS
T ss_pred CCCCHHHHHHhh-cCceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCcccCHHHhhhhhhhc--ccCcEEEEcC
Confidence 555677777665 45555432 00 234555554422 1589999999
Q ss_pred CCChHHHHHHHH-CCCcEEEeccccc
Q 022271 143 IVDARGYVAALS-LGAQGICLGTRFV 167 (300)
Q Consensus 143 I~~g~~v~aal~-lGAdgV~~GT~fl 167 (300)
| +++-+..++. .+..||=+-|.+=
T Consensus 156 l-~p~NV~~ai~~~~p~gvDvsSGvE 180 (197)
T PF00697_consen 156 L-NPENVREAIRQVRPYGVDVSSGVE 180 (197)
T ss_dssp ---TTTHHHHHHHC--SEEEESGGGE
T ss_pred C-ChHHHHHHHHhcCceEEEeCCccc
Confidence 9 5668888888 8999988866553
No 210
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.92 E-value=0.0037 Score=55.79 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=52.7
Q ss_pred cHHHHHHHHHCCCeEeec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 99 SEELVLEAHSAGVKVVPQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|.++.+...+.|..-+|. ...+.++.++.+.+ .+||.+.|||.+-+++.++|.+||+-|.+||..+..
T Consensus 37 p~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~---~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~ 113 (233)
T cd04723 37 PLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAW---PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS 113 (233)
T ss_pred HHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhC---CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc
Confidence 455666666666654443 22466777777766 799999999999999999999999999999987654
No 211
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.028 Score=49.20 Aligned_cols=127 Identities=15% Similarity=0.160 Sum_probs=84.3
Q ss_pred HHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHH----HHHHHHHCCCeEeec-----------
Q 022271 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEE----LVLEAHSAGVKVVPQ----------- 116 (300)
Q Consensus 53 ~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~----~v~~~~~~G~~v~~~----------- 116 (300)
+.++.+|++ .++++-..+-..+.-.-.++.+.++|++++.+.+-. +.+ .++..|+.|..+...
T Consensus 45 ~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A-~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~ 123 (217)
T COG0269 45 RAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA-DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRA 123 (217)
T ss_pred HHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC-CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHH
Confidence 456667776 567776666554444556778888888888876322 322 333345556555432
Q ss_pred -----------------------cC-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc-
Q 022271 117 -----------------------DG-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE- 171 (300)
Q Consensus 117 -----------------------~~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E- 171 (300)
.. .+..+..+++..+ ...+|-.+||| +++++..+...|++-|.+|+.+..+..
T Consensus 124 ~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~-~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt~a~dp 201 (217)
T COG0269 124 KWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSD-LGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAITGAKDP 201 (217)
T ss_pred HHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhc-cCceEEEecCC-CHHHHHHHhcCCCCEEEECchhcCCCCH
Confidence 11 2456677776652 13789999999 789999999999999999999888765
Q ss_pred cCCCHHHHHHH
Q 022271 172 SYAHPEYKRKL 182 (300)
Q Consensus 172 s~~~~~~k~~i 182 (300)
..+...+++.+
T Consensus 202 ~~~a~~~~~~i 212 (217)
T COG0269 202 AEAARKFKEEI 212 (217)
T ss_pred HHHHHHHHHHH
Confidence 33444555554
No 212
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.91 E-value=0.026 Score=56.42 Aligned_cols=62 Identities=26% Similarity=0.328 Sum_probs=51.9
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
.+.++.++.+.+ ++||||+||+++.+|+.+++. .|||++..++-|-...- .....|+.+.+.
T Consensus 470 d~~l~~~v~~~~---~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~--~~~~~k~~l~~~ 532 (538)
T PLN02617 470 DIELVKLVSDAV---TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEV--PISSVKEHLLEE 532 (538)
T ss_pred CHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCC--CHHHHHHHHHHC
Confidence 367888888887 899999999999999999998 67999999999988743 356678777753
No 213
>PLN02535 glycolate oxidase
Probab=96.89 E-value=0.015 Score=55.18 Aligned_cols=148 Identities=12% Similarity=0.073 Sum_probs=93.5
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| +..||+.+|++. .. ...+|.+..++|..-+++.....+.|++. +..+.|+..++..+..
T Consensus 64 t~~lG~~~~~P~~iaP~g~-~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva-------~~~~~~~wfQlY~~~d 135 (364)
T PLN02535 64 TTILGYTISAPIMIAPTAM-HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVA-------SSCNAVRFLQLYVYKR 135 (364)
T ss_pred eEECCccccccceechHHH-hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHH-------hcCCCCeEEEEeccCC
Confidence 45677 567999999862 22 24788888899988777664334555443 2345688888887653
Q ss_pred ---cHHHHHHHHHcCCcEEEEcCCCCc-----HH-----------HHHHHHHCCCe-------------EeeccChhchH
Q 022271 76 ---HNENIKAILSEKVAVLQVSWGEYS-----EE-----------LVLEAHSAGVK-------------VVPQDGLISLL 123 (300)
Q Consensus 76 ---~~~~~~~~~e~g~~~i~~~~G~~~-----~~-----------~v~~~~~~G~~-------------v~~~~~~~~ll 123 (300)
..+.++.+.+.|.+.+.+....|- .+ .+......+.. .+...-++.-+
T Consensus 136 r~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i 215 (364)
T PLN02535 136 RDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDI 215 (364)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHH
Confidence 256788888999998877543320 11 01100000000 00001144556
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
..+++.. ++|||+ .||.+++++..+..+|+|+|.+.
T Consensus 216 ~~lr~~~---~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 216 EWLRSIT---NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred HHHHhcc---CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 6666654 799765 67899999999999999999884
No 214
>PLN02979 glycolate oxidase
Probab=96.82 E-value=0.023 Score=53.79 Aligned_cols=149 Identities=12% Similarity=0.110 Sum_probs=92.9
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| ...||+.+|++. .. ...+|.|..++|..-+++.....+.|++. + ..+.|...++..+..
T Consensus 61 t~llG~~~~~P~~iAP~g~-~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa----~---a~~~~~wfQLY~~~D 132 (366)
T PLN02979 61 TTVLGFKISMPIMVAPTAM-QKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVA----S---TGPGIRFFQLYVYKN 132 (366)
T ss_pred eEECCcccCccceecHHHH-HhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHH----h---ccCCCeEEEEeecCC
Confidence 45677 577999999962 22 24888999999988888764334555432 2 234578888887654
Q ss_pred c---HHHHHHHHHcCCcEEEEcCCCCc-----HH-----------HHHHHHHC--CC-e-------------EeeccChh
Q 022271 76 H---NENIKAILSEKVAVLQVSWGEYS-----EE-----------LVLEAHSA--GV-K-------------VVPQDGLI 120 (300)
Q Consensus 76 ~---~~~~~~~~e~g~~~i~~~~G~~~-----~~-----------~v~~~~~~--G~-~-------------v~~~~~~~ 120 (300)
. .+.++.+.+.|.+.+.+....|. ++ ........ +- . .+...-++
T Consensus 133 r~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW 212 (366)
T PLN02979 133 RNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSW 212 (366)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCH
Confidence 2 56788888999998877533220 00 00011000 00 0 00001133
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
.-+..+++.. ++|||+ .||.+.+|+..+..+|+|+|.++.
T Consensus 213 ~dl~wlr~~~---~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 213 KDVQWLQTIT---KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred HHHHHHHhcc---CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 4456666554 899776 556899999999999999999943
No 215
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.82 E-value=0.034 Score=47.29 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=35.4
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+..+.++++..+ .++||++.||+.+.+.+..++.+||+|+.+|
T Consensus 158 ~~~~~~~i~~~~~-~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 158 TVEDVKLMKEAVG-GRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CHHHHHHHHHhcc-cCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 4455666666552 1579999999999999999999999999876
No 216
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=96.82 E-value=0.0099 Score=55.63 Aligned_cols=38 Identities=13% Similarity=0.371 Sum_probs=35.0
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
++.+|+.+||.+++|+..+...|+|+|.+|+.|+.++.
T Consensus 288 ~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~d 325 (338)
T PLN02460 288 GIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDD 325 (338)
T ss_pred CeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCC
Confidence 56789999999999999999999999999999998753
No 217
>PRK08999 hypothetical protein; Provisional
Probab=96.78 E-value=0.019 Score=53.24 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=36.2
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
+..+.++++.. ++||+|-||| +.+.+...+..||+||.+=+.|
T Consensus 269 ~~~~~~~~~~~---~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 269 WEGFAALIAGV---PLPVYALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred HHHHHHHHHhC---CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 34566666665 7999999999 9999999999999999987765
No 218
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.78 E-value=0.0058 Score=55.29 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=61.1
Q ss_pred CcHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 98 YSEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 98 ~~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.|.++.+..++.|...+|. ...+.++.++++ + ++||=..|||++ +++..+|.+||+-|.+||..+...
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i~~-~---~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~~ 118 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIMLGADDASLAAALEALRA-Y---PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFRDG 118 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHh-C---CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHhCC
Confidence 3678888888889877775 224566777777 5 799999999997 999999999999999999988764
Q ss_pred ccCCCHHHHHHHHc
Q 022271 171 ESYAHPEYKRKLVE 184 (300)
Q Consensus 171 Es~~~~~~k~~i~~ 184 (300)
| ..+.+-+.+.+
T Consensus 119 ~--~~p~~v~~~~~ 130 (262)
T PLN02446 119 Q--IDLERLKDLVR 130 (262)
T ss_pred C--CCHHHHHHHHH
Confidence 3 33444444433
No 219
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.78 E-value=0.012 Score=53.68 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.+.++++|+.. |+...+.......+.+..+++.|+++|.+.- ++.+.++++ ++.
T Consensus 167 ~i~~~v~~~k~~~--p~~~~I~VEv~tleea~~A~~~GaDiI~LDn--~~~e~l~~~--------------------v~~ 222 (273)
T PRK05848 167 DLKEFIQHARKNI--PFTAKIEIECESLEEAKNAMNAGADIVMCDN--MSVEEIKEV--------------------VAY 222 (273)
T ss_pred cHHHHHHHHHHhC--CCCceEEEEeCCHHHHHHHHHcCCCEEEECC--CCHHHHHHH--------------------HHH
Confidence 4566777777653 3223333444467788888899999998762 233333322 111
Q ss_pred hC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 130 IG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 130 ~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+ ..++.+.++||| |.+.+.++..+|+|.+.+|+.+-..
T Consensus 223 ~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa 263 (273)
T PRK05848 223 RNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQA 263 (273)
T ss_pred hhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCC
Confidence 11 125779999999 9999999999999999999977643
No 220
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=96.72 E-value=0.045 Score=49.47 Aligned_cols=48 Identities=27% Similarity=0.435 Sum_probs=36.8
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCC--ChHH----HHHHHHCCCcEEEeccccccCc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIV--DARG----YVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~--~g~~----v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+..+.++++.. ++||+++|||. |.++ +..++.+||+|+.+|+.++...
T Consensus 181 ~~~l~~~~~~~---~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~ 234 (258)
T TIGR01949 181 IDSFRDVVKGC---PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHD 234 (258)
T ss_pred HHHHHHHHHhC---CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCC
Confidence 45566666655 79999999999 5444 4555689999999999988653
No 221
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=96.70 E-value=0.035 Score=52.78 Aligned_cols=148 Identities=13% Similarity=0.123 Sum_probs=91.9
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| +..||+.+|++. .. ...+|.+..++|..-+++...-.+.|++. +..+.|+..+|..+..
T Consensus 62 t~~lG~~~~~Pi~iAP~g~-~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva-------~~~~~~~wfQlY~~~D 133 (367)
T PLN02493 62 TTVLGFKISMPIMVAPTAM-QKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVA-------STGPGIRFFQLYVYKN 133 (367)
T ss_pred eEECCccccccceechHHH-HhhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHH-------hcCCCCcEEEEeecCC
Confidence 45677 578999999962 22 23788888899987777663334555442 2235578888887654
Q ss_pred c---HHHHHHHHHcCCcEEEEcCCCCc-----HHH-----------HHHHHHC--CC-e-------------EeeccChh
Q 022271 76 H---NENIKAILSEKVAVLQVSWGEYS-----EEL-----------VLEAHSA--GV-K-------------VVPQDGLI 120 (300)
Q Consensus 76 ~---~~~~~~~~e~g~~~i~~~~G~~~-----~~~-----------v~~~~~~--G~-~-------------v~~~~~~~ 120 (300)
. .+.++.+.+.|.+.+.+....|. .+. ...+... +- . .+...-++
T Consensus 134 r~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW 213 (367)
T PLN02493 134 RNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSW 213 (367)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCH
Confidence 2 56788888999998877543220 000 0000000 00 0 00001133
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.-+..+++.. ++|||+ .||.+.+|+..+..+|+|+|.+.
T Consensus 214 ~di~wlr~~~---~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vs 252 (367)
T PLN02493 214 KDVQWLQTIT---KLPILV-KGVLTGEDARIAIQAGAAGIIVS 252 (367)
T ss_pred HHHHHHHhcc---CCCEEe-ecCCCHHHHHHHHHcCCCEEEEC
Confidence 4456666554 799776 56679999999999999999994
No 222
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.028 Score=49.13 Aligned_cols=133 Identities=20% Similarity=0.368 Sum_probs=89.3
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~ 104 (300)
+++.|+-+ ||+..+=- .+.+|..+ +.|+.+++.. +--+|.+-+. +.++++.+.+.|.+++..- |. .+++++
T Consensus 29 ~~a~Ali~-gGi~~IEI-Tl~sp~a~-e~I~~l~~~~p~~lIGAGTVL---~~~q~~~a~~aGa~fiVsP-~~-~~ev~~ 100 (211)
T COG0800 29 PLAKALIE-GGIPAIEI-TLRTPAAL-EAIRALAKEFPEALIGAGTVL---NPEQARQAIAAGAQFIVSP-GL-NPEVAK 100 (211)
T ss_pred HHHHHHHH-cCCCeEEE-ecCCCCHH-HHHHHHHHhCcccEEcccccc---CHHHHHHHHHcCCCEEECC-CC-CHHHHH
Confidence 55555555 66777643 24555443 4566665543 3345555544 5789999999999999765 55 578999
Q ss_pred HHHHCCCeEeeccC--------------hhchH-------HHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 105 EAHSAGVKVVPQDG--------------LISLL-------PMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 105 ~~~~~G~~v~~~~~--------------~~~ll-------~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
.+++.|+.+++... .+.++ +...++++. .+++++..|||+.- .+..++++|+.+|-
T Consensus 101 ~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~~-N~~~yla~gv~avG 179 (211)
T COG0800 101 AANRYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVSLD-NAADYLAAGVVAVG 179 (211)
T ss_pred HHHhCCCcccCCCCCHHHHHHHHHcChhheeecCccccCcHHHHHHHcCCCCCCeEeecCCCCHH-HHHHHHhCCceEEe
Confidence 99999998886511 12222 223334332 36999999999766 99999999988888
Q ss_pred eccccc
Q 022271 162 LGTRFV 167 (300)
Q Consensus 162 ~GT~fl 167 (300)
+||-+.
T Consensus 180 ~Gs~l~ 185 (211)
T COG0800 180 LGSWLV 185 (211)
T ss_pred cCcccc
Confidence 887665
No 223
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=96.66 E-value=0.091 Score=46.62 Aligned_cols=133 Identities=19% Similarity=0.314 Sum_probs=80.4
Q ss_pred HHHHHhCCceEEecCCCC--------CCHHHH---HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc--
Q 022271 28 VAAVANAGGLGLLRAPDW--------EAPDYL---RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS-- 94 (300)
Q Consensus 28 a~avs~aGglG~i~~~~~--------~~~~~l---~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~-- 94 (300)
+.+..++|.=|+|-. || .+|+.. ...+++++.....|+|||+.-+++ ...+..+...|+++|-++
T Consensus 40 A~~leegG~DavivE-N~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~-vaA~~IA~a~gA~FIRVN~~ 117 (263)
T COG0434 40 AAALEEGGVDAVIVE-NYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDA-VAALAIAYAVGADFIRVNVL 117 (263)
T ss_pred HHHHHhCCCcEEEEe-ccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeecccc-HHHHHHHHhcCCCEEEEEee
Confidence 344556676676643 33 234443 334556666678899999997654 344555666677776321
Q ss_pred -------CCCC---cHHHHHHHHH--CCCeEeec---------------------------------------cChhchH
Q 022271 95 -------WGEY---SEELVLEAHS--AGVKVVPQ---------------------------------------DGLISLL 123 (300)
Q Consensus 95 -------~G~~---~~~~v~~~~~--~G~~v~~~---------------------------------------~~~~~ll 123 (300)
.|.. ..++++.-+. .+++++.+ ......|
T Consensus 118 tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el 197 (263)
T COG0434 118 TGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGSPPDLEEL 197 (263)
T ss_pred eceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCCCCCHHHH
Confidence 1211 1222222111 34555543 1245566
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
..++++. +.||++..|+ +.+-+...|.. |||+.+||-|=
T Consensus 198 ~~a~~~~---~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 198 KLAKEAV---DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred HHHHhcc---CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEc
Confidence 6677766 7999999998 56777888888 99999998764
No 224
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=96.63 E-value=0.11 Score=45.78 Aligned_cols=115 Identities=13% Similarity=0.066 Sum_probs=73.7
Q ss_pred HHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHH----HHHHHHHCCCeEeec--c--------
Q 022271 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEE----LVLEAHSAGVKVVPQ--D-------- 117 (300)
Q Consensus 53 ~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~----~v~~~~~~G~~v~~~--~-------- 117 (300)
+.++.+|+. +++++-+.|...++.....+.+.+.|++.++++.-. ..+ .++..++.|..+..+ .
T Consensus 45 ~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a-~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~ 123 (216)
T PRK13306 45 KAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAA-HIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQ 123 (216)
T ss_pred HHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCC-CHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHH
Confidence 347777776 688999999988877666656889999999998532 333 444445567665543 0
Q ss_pred ---------------------C---hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 118 ---------------------G---LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 118 ---------------------~---~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
| .-..+..+++... .+..+..+|||.-. .+......|||.+++|++...++
T Consensus 124 ~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~-~~~~i~V~gGI~~~-~~~~~~~~~ad~~VvGr~I~~a~ 198 (216)
T PRK13306 124 QWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSD-MGFKVSVTGGLVVE-DLKLFKGIPVKTFIAGRAIRGAA 198 (216)
T ss_pred HHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhc-CCCeEEEcCCCCHh-hHHHHhcCCCCEEEECCcccCCC
Confidence 0 0112233444332 23448999999743 22334555999999999955553
No 225
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=96.63 E-value=0.018 Score=52.42 Aligned_cols=47 Identities=23% Similarity=0.449 Sum_probs=36.9
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCC--ChHHHHHHH----HCCCcEEEeccccccC
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIV--DARGYVAAL----SLGAQGICLGTRFVAS 169 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~--~g~~v~aal----~lGAdgV~~GT~fl~t 169 (300)
..++.++++.. ++||+++|||. |.+++.+.+ .+||+|+.+|+..+-.
T Consensus 185 ~~~l~~~~~~~---~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~ 237 (267)
T PRK07226 185 PESFREVVEGC---PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQH 237 (267)
T ss_pred HHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcC
Confidence 34556665543 79999999999 777766664 8999999999998865
No 226
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.60 E-value=0.0078 Score=54.49 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=50.4
Q ss_pred cHHHHHHHHHCCCe--Eeec---cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC--CCcEEEecccc
Q 022271 99 SEELVLEAHSAGVK--VVPQ---DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL--GAQGICLGTRF 166 (300)
Q Consensus 99 ~~~~v~~~~~~G~~--v~~~---~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l--GAdgV~~GT~f 166 (300)
+.+++.+..+.|+. ++.. +| .+.++.++.+.+ ++|||++|||++-+|+.+...+ |..+|.+|.++
T Consensus 165 ~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~---~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 165 VDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHS---PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred HHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 45666666666543 2222 22 567888998886 8999999999999999999998 57899999997
No 227
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=96.56 E-value=0.025 Score=49.25 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhcC-CcEEeeeecCCC--c----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 48 PDYLRDLIRKTRSLTE-RPFGVGVVLAFP--H----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~~-~P~gvnl~~~~~--~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
.+.+.++|.++++..+ .|+-+ +.... . ....+.+.|.|+++|-++.|-++ .| .+....
T Consensus 100 ~~~~~~ei~~v~~~~~g~~lkv--I~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~---------~~----at~~~v 164 (203)
T cd00959 100 YEAVYEEIAAVVEACGGAPLKV--ILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGP---------GG----ATVEDV 164 (203)
T ss_pred HHHHHHHHHHHHHhcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCC---------CC----CCHHHH
Confidence 3566777777776643 34333 32221 1 23456677778888877755321 00 001122
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
.++.++.. .++||.++|||.|.+++.+++.+||+-+
T Consensus 165 ~~~~~~~~----~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 165 KLMKEAVG----GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred HHHHHHhC----CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 33333333 2799999999999999999999999843
No 228
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=96.55 E-value=0.022 Score=50.05 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhhcC-CcEEeeeecCCC---c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccCh
Q 022271 47 APDYLRDLIRKTRSLTE-RPFGVGVVLAFP---H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGL 119 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~-~P~gvnl~~~~~---~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~ 119 (300)
+.+.+.++|+++++..+ .|+=| +.... . ....+.+.+.|+++|=++.|-.+ .| .+
T Consensus 100 ~~~~v~~ei~~i~~~~~g~~lKv--IlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~---------~g-------at 161 (211)
T TIGR00126 100 NEEVVYDDIRAVVEACAGVLLKV--IIETGLLTDEEIRKACEICIDAGADFVKTSTGFGA---------GG-------AT 161 (211)
T ss_pred cHHHHHHHHHHHHHHcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC---------CC-------CC
Confidence 45677777777776543 33333 33221 1 23456677788888877755321 01 12
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
..-+..+++.+++ ++||-++|||.|.+++.+++.+||+-+
T Consensus 162 ~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 162 VEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASRI 201 (211)
T ss_pred HHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence 2222223333332 699999999999999999999999853
No 229
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.55 E-value=0.0079 Score=53.68 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=53.8
Q ss_pred cHHHHHHHHHCCCeEeec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 99 SEELVLEAHSAGVKVVPQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|-++++.+.+.|..-+|. .....++.++.+.. ..||...|||++-+++..++.+||+-|.+||..+..
T Consensus 32 P~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~---~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 32 PIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIG---FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN 108 (232)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhC---CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 567777777777765553 12345666666632 259999999999999999999999999999988876
Q ss_pred cc
Q 022271 170 EE 171 (300)
Q Consensus 170 ~E 171 (300)
+|
T Consensus 109 p~ 110 (232)
T PRK13586 109 FN 110 (232)
T ss_pred HH
Confidence 43
No 230
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=96.53 E-value=0.041 Score=52.61 Aligned_cols=148 Identities=15% Similarity=0.161 Sum_probs=90.9
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| ...||+.+|++. .. ...+|.+..++|..=+++.....+.|++. +..+.|+..+|..+..
T Consensus 62 t~llG~~~~~Pi~iAP~g~-~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia-------~~~~~~~wfQlY~~~D 133 (381)
T PRK11197 62 TTLFGEKLSMPVALAPVGL-TGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVA-------PAIKRPMWFQLYVLRD 133 (381)
T ss_pred eEECCcccccchhhChHHH-hhccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHH-------hccCCCeEEEEEecCC
Confidence 45677 577999999962 22 35788888899975555543223444442 2245688888876653
Q ss_pred c---HHHHHHHHHcCCcEEEEcCCCC---------------cH----HHHHHH----------HHCCCeEe---ec----
Q 022271 76 H---NENIKAILSEKVAVLQVSWGEY---------------SE----ELVLEA----------HSAGVKVV---PQ---- 116 (300)
Q Consensus 76 ~---~~~~~~~~e~g~~~i~~~~G~~---------------~~----~~v~~~----------~~~G~~v~---~~---- 116 (300)
. .+.++.+.+.|.+.+.+....| |. .+.+.+ ...+-.-+ .+
T Consensus 134 r~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~ 213 (381)
T PRK11197 134 RGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGK 213 (381)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCccccccccccc
Confidence 2 5678888889999887754322 10 011100 00000000 00
Q ss_pred -c----------------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 117 -D----------------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 117 -~----------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
. -++.-+..+++.. ++||| ..||.+.+++..++.+|+|+|.++
T Consensus 214 ~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~---~~pvi-vKgV~s~~dA~~a~~~Gvd~I~Vs 273 (381)
T PRK11197 214 PTGLEDYIGWLGNNFDPSISWKDLEWIRDFW---DGPMV-IKGILDPEDARDAVRFGADGIVVS 273 (381)
T ss_pred ccchhHHHHHHHhccCCCCCHHHHHHHHHhC---CCCEE-EEecCCHHHHHHHHhCCCCEEEEC
Confidence 0 1223366677765 78965 577899999999999999999883
No 231
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.53 E-value=0.0078 Score=54.01 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=54.1
Q ss_pred cHHHHHHHHHCCCeEeec---c-------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ---D-------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---~-------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|-++.+.+.+.|...+|. . ..+.++.++.+.+ .||...|||++-+++..++.+||+-|.+||..+-
T Consensus 32 P~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~----~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~ 107 (241)
T PRK14114 32 PAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFA----EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhc----CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhC
Confidence 567777777778765553 1 1346677777654 6999999999999999999999999999998776
Q ss_pred Ccc
Q 022271 169 SEE 171 (300)
Q Consensus 169 t~E 171 (300)
.+|
T Consensus 108 ~p~ 110 (241)
T PRK14114 108 DPS 110 (241)
T ss_pred CHH
Confidence 543
No 232
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.50 E-value=0.023 Score=55.63 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=70.7
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc----HHHHHHHHHCCCeEeec-------------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~----~~~v~~~~~~G~~v~~~------------- 116 (300)
.++++|+.++.|+-.+=+. -++.++......|++.|.+-....+ .++++..++.|..++.-
T Consensus 101 ~l~~vr~~v~~PvLrKDFi--id~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~ 178 (454)
T PRK09427 101 FLPIVRAIVTQPILCKDFI--IDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIAL 178 (454)
T ss_pred HHHHHHHhCCCCEEecccc--CCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhC
Confidence 4567777777777443222 2456677777778887765332222 23445555566555432
Q ss_pred -----------cChh----chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 117 -----------DGLI----SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 -----------~~~~----~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
..++ ..-.++...+. .++.+|+.+||.+++|+..+. .|||||.+|+.++.++.
T Consensus 179 ~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip-~~~~~vseSGI~t~~d~~~~~-~~~davLiG~~lm~~~d 246 (454)
T PRK09427 179 GAKVIGINNRNLRDLSIDLNRTRELAPLIP-ADVIVISESGIYTHAQVRELS-PFANGFLIGSSLMAEDD 246 (454)
T ss_pred CCCEEEEeCCCCccceECHHHHHHHHhhCC-CCcEEEEeCCCCCHHHHHHHH-hcCCEEEECHHHcCCCC
Confidence 1111 11222333332 268899999999999998865 48999999999999853
No 233
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=96.49 E-value=0.22 Score=43.67 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=59.5
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+..+.++| .+|++... -+.++++.++..+.++. ..--|.++.....++..+.+.+.++++|.++.
T Consensus 9 Gi~~~eda~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~---~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg 85 (210)
T PRK01222 9 GITTPEDAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPP---FVKVVGVFVNASDEEIDEIVETVPLDLLQLHG 85 (210)
T ss_pred CCCcHHHHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCC---CCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 677777777777776 59998422 23566666655554432 11235567766667777888889999999995
Q ss_pred CCCcHHHHHHHHH-CCCeEee
Q 022271 96 GEYSEELVLEAHS-AGVKVVP 115 (300)
Q Consensus 96 G~~~~~~v~~~~~-~G~~v~~ 115 (300)
. .+.+.++.+++ .+..++.
T Consensus 86 ~-e~~~~~~~l~~~~~~~iik 105 (210)
T PRK01222 86 D-ETPEFCRQLKRRYGLPVIK 105 (210)
T ss_pred C-CCHHHHHHHHhhcCCcEEE
Confidence 4 45677877775 3555553
No 234
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.47 E-value=0.066 Score=49.45 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=83.0
Q ss_pred CccceecCC-CCCCCCcHHHHHHHHhCCceEEecCCC--------------------------C--CCHHHHHHHHHHHH
Q 022271 9 FEYGIVQAP-LGPDISGPELVAAVANAGGLGLLRAPD--------------------------W--EAPDYLRDLIRKTR 59 (300)
Q Consensus 9 ~~~Pii~ap-M~~g~s~~~la~avs~aGglG~i~~~~--------------------------~--~~~~~l~~~i~~~r 59 (300)
++.||+.|. +. -.+.+++.....+| +|++-.+. + ..++...+.+...+
T Consensus 11 ~~nPv~~aag~~--~~~~~~~~~~~~~g-~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~ 87 (301)
T PRK07259 11 LKNPVMPASGTF--GFGGEYARFYDLNG-LGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWL 87 (301)
T ss_pred CCCCcEECCcCC--CCCHHHHHHhhhcC-CcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHH
Confidence 678999865 32 34558888776666 55542211 0 11233333333333
Q ss_pred hhcCCcEEeeeecCCCc--HHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCC-CeEeec-cChhchHHHHHHhhCCCC
Q 022271 60 SLTERPFGVGVVLAFPH--NENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAG-VKVVPQ-DGLISLLPMVVDLIGDRD 134 (300)
Q Consensus 60 ~~~~~P~gvnl~~~~~~--~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G-~~v~~~-~~~~~ll~~v~~~~~~~~ 134 (300)
+..+.|+.+|+....+. .+.++.+.++| ++.|.++++||.. ..| ...... .-+..++..|++++ +
T Consensus 88 ~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~-------~~gg~~~~~~~~~~~eiv~~vr~~~---~ 157 (301)
T PRK07259 88 EEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNV-------KHGGMAFGTDPELAYEVVKAVKEVV---K 157 (301)
T ss_pred hccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCC-------CCCccccccCHHHHHHHHHHHHHhc---C
Confidence 33478999999876542 45567777788 9999999998631 122 222211 11345555666655 7
Q ss_pred CcEEEccC--CCChHHHHHHH-HCCCcEEEe
Q 022271 135 IPIIAAGG--IVDARGYVAAL-SLGAQGICL 162 (300)
Q Consensus 135 iPViaaGG--I~~g~~v~aal-~lGAdgV~~ 162 (300)
+||++=-. +.+...+++.+ ..|+|++.+
T Consensus 158 ~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 158 VPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 89887433 44555566544 589999876
No 235
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=96.44 E-value=0.011 Score=55.75 Aligned_cols=116 Identities=24% Similarity=0.316 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCCCc------H---HHHHHHHHcCCcEEEEcCCCCcHHHHH-HHHHCCCeEeecc
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAFPH------N---ENIKAILSEKVAVLQVSWGEYSEELVL-EAHSAGVKVVPQD 117 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~~~------~---~~~~~~~e~g~~~i~~~~G~~~~~~v~-~~~~~G~~v~~~~ 117 (300)
-+.+.|+.+|+.. +.|+++.+...... + +.++.+.+.+++++.++.+.... ... ...... .... .
T Consensus 201 f~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~-~~~~-~ 277 (341)
T PF00724_consen 201 FLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVH-WSEPRPSPPF-DFEP-G 277 (341)
T ss_dssp HHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEE-EEBTSSTTTT-TTTT-T
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhcccccccccc-cccccccccc-cccc-c
Confidence 3566788888874 46788888776431 2 23566667777766543222100 000 000000 0000 0
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
..+.+...+++.+ ++|||+.|||.+++.+.+++..| ||.|.||+.|++-++
T Consensus 278 ~~~~~a~~ik~~~---~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd 329 (341)
T PF00724_consen 278 YNLDLAEAIKKAV---KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPD 329 (341)
T ss_dssp TTHHHHHHHHHHH---SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TT
T ss_pred hhhhhhhhhhhhc---CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCch
Confidence 1234566777777 79999999999999999999987 999999999998754
No 236
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.43 E-value=0.024 Score=54.79 Aligned_cols=135 Identities=14% Similarity=0.144 Sum_probs=79.4
Q ss_pred HHHHHHHhCCceEEecCC-CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEE-----------
Q 022271 26 ELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV----------- 93 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~-~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~----------- 93 (300)
+.+..+.++| +-.+-.- -..+.+++.+.++++++++. .+++.++.++ .++.+++.+++.|-+
T Consensus 221 ~~ve~aL~aG-v~~VQLReK~ls~~el~~la~~l~~l~~-~~gv~LiIND----~~dlAl~~gAdGVHLGQeDL~~~~aR 294 (437)
T PRK12290 221 EWIERLLPLG-INTVQLRIKDPQQADLEQQIIRAIALGR-EYNAQVFIND----YWQLAIKHQAYGVHLGQEDLEEANLA 294 (437)
T ss_pred HHHHHHHhCC-CCEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCEEEEEC----HHHHHHHcCCCEEEcChHHcchhhhh
Confidence 4566666766 3443110 01466788888888887653 2455555543 355555555555533
Q ss_pred -----------cCCCCcHHHHHHHHHCCCeEeec---c-------C----hhchHHHHHHhhCC------CCCcEEEccC
Q 022271 94 -----------SWGEYSEELVLEAHSAGVKVVPQ---D-------G----LISLLPMVVDLIGD------RDIPIIAAGG 142 (300)
Q Consensus 94 -----------~~G~~~~~~v~~~~~~G~~v~~~---~-------~----~~~ll~~v~~~~~~------~~iPViaaGG 142 (300)
+.-+ ..+ +.+..+.|...+.. . + -+..+.++++.+.. .++||+|-||
T Consensus 295 ~ilg~~~iIGvStHs-~eE-l~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGG 372 (437)
T PRK12290 295 QLTDAGIRLGLSTHG-YYE-LLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGG 372 (437)
T ss_pred hhcCCCCEEEEecCC-HHH-HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECC
Confidence 2211 122 23333445444322 0 0 12345555544310 2699999999
Q ss_pred CCChHHHHHHHHCCCcEEEeccccccC
Q 022271 143 IVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 143 I~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
| +.+.+..++..||+||.+=+.++.+
T Consensus 373 I-~~~Ni~~vl~aGa~GVAVVSAI~~A 398 (437)
T PRK12290 373 I-DQSNAEQVWQCGVSSLAVVRAITLA 398 (437)
T ss_pred c-CHHHHHHHHHcCCCEEEEehHhhcC
Confidence 9 8899999999999999999998854
No 237
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.43 E-value=0.077 Score=46.62 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=37.0
Q ss_pred hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+.++.+.. .++||+|-|||. .+.+.+.+..||+||.+-+.++.+.
T Consensus 148 ~l~~~~~~~--~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvisai~~~~ 193 (211)
T PRK03512 148 QLARHVERL--ADYPTVAIGGIS-LERAPAVLATGVGSIAVVSAITQAA 193 (211)
T ss_pred HHHHHHHhc--CCCCEEEECCCC-HHHHHHHHHcCCCEEEEhhHhhCCC
Confidence 345555442 269999999995 8899999999999999999998554
No 238
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.42 E-value=0.065 Score=53.19 Aligned_cols=133 Identities=17% Similarity=0.247 Sum_probs=79.1
Q ss_pred HHHHHHHHhCCceEEecC-CCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCc--------------
Q 022271 25 PELVAAVANAGGLGLLRA-PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA-------------- 89 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~-~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~-------------- 89 (300)
.+.+....++| +..+-. .-..+.+++.+.+++++++..+ +++.++.+.. .+.+.+.+++
T Consensus 310 ~~~l~~~l~~G-v~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~liind~----~~lA~~~~adGvHl~~~d~~~~~~ 383 (502)
T PLN02898 310 VDAVRAAIEGG-ATIVQLREKEAETREFIEEAKACLAICRS-YGVPLLINDR----VDVALACDADGVHLGQSDMPVRLA 383 (502)
T ss_pred HHHHHHHHHcC-CCEEEEccCCCCHHHHHHHHHHHHHHHHH-hCCEEEEcCh----HHHHHhcCCCEEEeChHhcCHHHH
Confidence 34566666766 444421 0124667777888887766432 3444454321 2222222222
Q ss_pred --------EEEEcCCCCcHHHHHHHHHCCCeEeec---c----------ChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 90 --------VLQVSWGEYSEELVLEAHSAGVKVVPQ---D----------GLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 90 --------~i~~~~G~~~~~~v~~~~~~G~~v~~~---~----------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
+|..++.. ..+ +.+..+.|...+.. . --+..+.++++.. ++||++-||| +.+.
T Consensus 384 r~~~~~~~~iG~S~h~-~~e-~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~---~~Pv~aiGGI-~~~~ 457 (502)
T PLN02898 384 RSLLGPGKIIGVSCKT-PEQ-AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS---KLPVVAIGGI-SASN 457 (502)
T ss_pred HHhcCCCCEEEEeCCC-HHH-HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC---CCCEEEECCC-CHHH
Confidence 34444433 233 34444566665532 0 0234566666554 7999999999 5889
Q ss_pred HHHHHHCCCc---EEEeccccccC
Q 022271 149 YVAALSLGAQ---GICLGTRFVAS 169 (300)
Q Consensus 149 v~aal~lGAd---gV~~GT~fl~t 169 (300)
+..++..||+ ||.+++.++-+
T Consensus 458 ~~~~~~~G~~~~~gvav~~~i~~~ 481 (502)
T PLN02898 458 AASVMESGAPNLKGVAVVSALFDQ 481 (502)
T ss_pred HHHHHHcCCCcCceEEEEeHHhcC
Confidence 9999999999 99999999854
No 239
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.37 E-value=0.027 Score=53.65 Aligned_cols=63 Identities=25% Similarity=0.405 Sum_probs=47.9
Q ss_pred cHHHHHHHHHCCCeEeecc------------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 99 SEELVLEAHSAGVKVVPQD------------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~~------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
..++++.+.++|+.++... +...-+.++.+.+ ++|||+ |+|.|.+++.+++..|||+|++|+.
T Consensus 144 ~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~---~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~g 218 (369)
T TIGR01304 144 AREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL---DVPVIA-GGVNDYTTALHLMRTGAAGVIVGPG 218 (369)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC---CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 3577788888998877631 1233355555555 799997 9999999999999999999998743
No 240
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.062 Score=46.16 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=81.9
Q ss_pred HHHHHHhhcCCc--EEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--CcHHHHHHHHHCCCeEeec-------------
Q 022271 54 LIRKTRSLTERP--FGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P--~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~--~~~~~v~~~~~~G~~v~~~------------- 116 (300)
.++.+|+.+++| |-+-++... .++.++.+.++|+..++++.-. -+..+++++|+.|.++...
T Consensus 53 vV~slR~~~~~~~ffD~HmMV~~-Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~ 131 (224)
T KOG3111|consen 53 VVESLRKHTGADPFFDVHMMVEN-PEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPL 131 (224)
T ss_pred HHHHHHhccCCCcceeEEEeecC-HHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHh
Confidence 467778877776 566666643 3678999999999999998521 1468999999999998753
Q ss_pred ---------------cC----hhchHHHHHHhhCCCCCcEE-EccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 ---------------DG----LISLLPMVVDLIGDRDIPII-AAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 ---------------~~----~~~ll~~v~~~~~~~~iPVi-aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.| ..+.+|.|...-....-+.| ..||+. +..+-++..+||+.++.||+...+.
T Consensus 132 ~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~-~~ti~~~a~AGAN~iVaGsavf~a~ 204 (224)
T KOG3111|consen 132 AEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVG-PSTIDKAAEAGANMIVAGSAVFGAA 204 (224)
T ss_pred hccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcC-cchHHHHHHcCCCEEEecceeecCC
Confidence 01 12455665543311123344 899995 5678889999999999999998874
No 241
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.30 E-value=0.028 Score=53.59 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=46.2
Q ss_pred cHHHHHHHHHCCCeEeeccC------------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 99 SEELVLEAHSAGVKVVPQDG------------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~~~------------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
..+.++.+.++|+.++...+ ...-+.++.+.. ++|||+ |+|.|.+++.+++.+|||+|++|.
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~---~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL---DVPVIV-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC---CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 35777788889988776421 122233344443 799999 999999999999999999999983
No 242
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.29 E-value=0.014 Score=51.19 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=50.8
Q ss_pred HHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 100 EELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.++.+...+.|...++. .+.+..+..+++.+ ++||+.-|+|.+..++..++.+|||+|.+|+..+-
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v---~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~ 106 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV---SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALD 106 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc---CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCC
Confidence 34455555555555543 24567777788776 79999999999999999999999999999988654
No 243
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=96.21 E-value=0.12 Score=47.56 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=40.2
Q ss_pred hhchHHHHHHhhCCCCCcEEEcc--CCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAG--GIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaG--GI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+..|.++.+.+ ++|+++=| || +.+++.+++..|+++|-+.|.+...
T Consensus 188 ~~~~L~~i~~~~---~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i~~a 236 (281)
T PRK06806 188 RFDRLQEINDVV---HIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATATFNS 236 (281)
T ss_pred CHHHHHHHHHhc---CCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHHHHH
Confidence 356788888877 79999999 88 4567999999999999999999873
No 244
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.17 E-value=0.27 Score=48.18 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=84.0
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+.+++++| .+||+... -+.++++.++..+.+. .--|.++.+.+..+..+.+.+.++++|.++
T Consensus 263 Git~~eda~~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~-----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLH- 336 (454)
T PRK09427 263 GLTRPQDAKAAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP-----LRYVGVFRNADIEDIVDIAKQLSLAAVQLH- 336 (454)
T ss_pred CCCCHHHHHHHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC-----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeC-
Confidence 678888888888877 49997421 2456776666555543 223667777666677777888999999999
Q ss_pred CCCcHHHHHHHHHC---CCeEeeccC-----------------------------hhchHHHHHHhhCCCCCcEEEccCC
Q 022271 96 GEYSEELVLEAHSA---GVKVVPQDG-----------------------------LISLLPMVVDLIGDRDIPIIAAGGI 143 (300)
Q Consensus 96 G~~~~~~v~~~~~~---G~~v~~~~~-----------------------------~~~ll~~v~~~~~~~~iPViaaGGI 143 (300)
|..+.+.++.+++. ++.++.... .+.+++ ... ..|++.||||
T Consensus 337 G~e~~~~~~~l~~~~~~~~~iikai~v~~~~~~~~~~~~d~~LlDs~~GGtG~~~DW~~l~---~~~---~~p~iLAGGL 410 (454)
T PRK09427 337 GDEDQAYIDALREALPKTCQIWKAISVGDTLPARDLQHVDRYLLDNGQGGTGQTFDWSLLP---GQS---LDNVLLAGGL 410 (454)
T ss_pred CCCCHHHHHHHHhhcCCCCeEEEEeecCchhhhhhhcCCCEEEEcCCCCCCCCccChHHhh---hcc---cCCEEEECCC
Confidence 55566778887752 344443200 011111 111 3578888887
Q ss_pred CChHHHHHHHHCCCcEEEecccc
Q 022271 144 VDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 144 ~~g~~v~aal~lGAdgV~~GT~f 166 (300)
+++.+..++..+..||=+-|.+
T Consensus 411 -~peNV~~ai~~~P~gVDVsSGV 432 (454)
T PRK09427 411 -NPDNCQQAAQLGCAGLDFNSGV 432 (454)
T ss_pred -CHHHHHHHHhcCCCEEEeCCcc
Confidence 5666666667777777775554
No 245
>PLN02363 phosphoribosylanthranilate isomerase
Probab=96.11 E-value=0.26 Score=44.68 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=57.2
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+.+++++| .+||+... -+.++++.++..+.++... .--|.++...+.++.++.+.+.++++|.++.
T Consensus 53 Git~~eda~~a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l~~~~--~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG 130 (256)
T PLN02363 53 GITSARDAAMAVEAGADFIGMILWPKSKRSISLSVAKEISQVAREGG--AKPVGVFVDDDANTILRAADSSDLELVQLHG 130 (256)
T ss_pred CCCcHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHhccccC--ccEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 678888787778877 49998422 2467777776666554211 1136667776667778888889999999994
Q ss_pred CCCcHHHHHHHH
Q 022271 96 GEYSEELVLEAH 107 (300)
Q Consensus 96 G~~~~~~v~~~~ 107 (300)
..+.+.++.++
T Consensus 131 -~e~~~~~~~l~ 141 (256)
T PLN02363 131 -NGSRAAFSRLV 141 (256)
T ss_pred -CCCHHHHHHhh
Confidence 44566666665
No 246
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.08 E-value=0.022 Score=50.74 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=63.5
Q ss_pred cHHHHHHHHHCCCeEeec---cC-------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ---DG-------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---~~-------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|-+......+.|...+|. .+ ...++.++++.+ ++||=..|||+|-+++.+.|.+|++-|.+||.-+-
T Consensus 33 P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~---~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~ 109 (241)
T COG0106 33 PLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEAT---DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVK 109 (241)
T ss_pred HHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhC---CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceec
Confidence 566777777888888876 11 346777777776 89999999999999999999999999999998743
Q ss_pred CcccCCCHHHHHHHHcCCC
Q 022271 169 SEESYAHPEYKRKLVEMDK 187 (300)
Q Consensus 169 t~Es~~~~~~k~~i~~a~~ 187 (300)
. ++..|+.+.+-.+
T Consensus 110 ~-----p~~v~~~~~~~g~ 123 (241)
T COG0106 110 N-----PDLVKELCEEYGD 123 (241)
T ss_pred C-----HHHHHHHHHHcCC
Confidence 3 5567776666543
No 247
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=96.07 E-value=0.019 Score=50.67 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=45.0
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.+.++.++.+.+ .+|+-.+|||.+-+|+.+.|.+|||-|-+.|+-+..+|
T Consensus 62 ~~~vv~r~A~~v---fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~ 111 (256)
T COG0107 62 MLDVVERVAEQV---FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPE 111 (256)
T ss_pred HHHHHHHHHhhc---eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChH
Confidence 567777888777 89999999999999999999999999999999888765
No 248
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.07 E-value=0.07 Score=49.12 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhcC--CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~~--~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+.+.++++|+... ++++| ...+.+.+..+++.|+|+|-+.--. + +-++++ ++.++.
T Consensus 182 i~~av~~~r~~~~~~~~I~V----Ev~tleea~eA~~~GaD~I~LDn~~-~-e~l~~a----------------v~~~~~ 239 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEV----ETETLEQVQEALEYGADIIMLDNMP-V-DLMQQA----------------VQLIRQ 239 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEE----ECCCHHHHHHHHHcCCCEEEECCCC-H-HHHHHH----------------HHHHHh
Confidence 5667777777542 23333 2235677777888899999886222 2 223321 111111
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.. .++|+.++||| |.+.+.++...|+|++.+|+.+.-+
T Consensus 240 ~~--~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa 277 (288)
T PRK07428 240 QN--PRVKIEASGNI-TLETIRAVAETGVDYISSSAPITRS 277 (288)
T ss_pred cC--CCeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhhCC
Confidence 11 27899999999 7999999999999999999876643
No 249
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=95.80 E-value=0.14 Score=46.71 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhc--CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLT--ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~--~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+...++++|+.. ++++++-.- +.+.+..+.+.++|+|-+.- ...+.+ .++++
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~----t~eea~~A~~~gaDyI~ld~--~~~e~l--------------------k~~v~ 217 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVE----SLEEAEEAAEAGADIIMLDN--MKPEEI--------------------KEAVQ 217 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeC----CHHHHHHHHHcCCCEEEECC--CCHHHH--------------------HHHHH
Confidence 445566777654 345554332 34556666777888777742 112222 23333
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.++. .+||.+.||| +.+.+.++...|+|++.+|..+-..
T Consensus 218 ~~~~-~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait~sa 256 (265)
T TIGR00078 218 LLKG-RVLLEASGGI-TLDNLEEYAETGVDVISSGALTHSV 256 (265)
T ss_pred HhcC-CCcEEEECCC-CHHHHHHHHHcCCCEEEeCHHHcCC
Confidence 3321 4899999999 7899999999999999997765544
No 250
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.80 E-value=0.13 Score=47.04 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhcC--CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~~--~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+.+.++++|+... +.+|+ -. .+.++++.+.+.++|.|.+.. . ....+.++++
T Consensus 174 ~~~~v~~aR~~~~~~~~Igv--sv--~tleea~~A~~~gaDyI~lD~-~---------------------~~e~l~~~~~ 227 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEV--ET--ETEEQVREAVAAGADIIMFDN-R---------------------TPDEIREFVK 227 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEE--Ee--CCHHHHHHHHHcCCCEEEECC-C---------------------CHHHHHHHHH
Confidence 5666777777643 23333 22 235566666778888887631 1 1233334444
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.++ .++||.|.||| +.+.+.++...|+|+|.+|..+-
T Consensus 228 ~~~-~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 228 LVP-SAIVTEASGGI-TLENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred hcC-CCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 432 15888899999 89999999999999999998654
No 251
>PRK06801 hypothetical protein; Provisional
Probab=95.76 E-value=0.4 Score=44.12 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=44.4
Q ss_pred hhchHHHHHHhhCCCCCcEEEccC--CCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGG--IVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGG--I~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.+.++.++++.+ ++|+++-|| |. .+++.+++.+|++.|-++|.+... ....+|+.+
T Consensus 191 ~~e~l~~i~~~~---~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~~a----~~~~~~~~~ 248 (286)
T PRK06801 191 DFARLAAIHQQT---GLPLVLHGGSGIS-DADFRRAIELGIHKINFYTGMSQA----ALAAVEQRM 248 (286)
T ss_pred CHHHHHHHHHhc---CCCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHHHHH----HHHHHHHHH
Confidence 456778887776 799999999 76 467899999999999999998776 344555555
No 252
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=95.69 E-value=0.026 Score=50.27 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=35.8
Q ss_pred hchHHHHHHhhCCCCCc----EEEccCC------CChHHHHHHHHCCC--cEEEecccc
Q 022271 120 ISLLPMVVDLIGDRDIP----IIAAGGI------VDARGYVAALSLGA--QGICLGTRF 166 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iP----ViaaGGI------~~g~~v~aal~lGA--dgV~~GT~f 166 (300)
..++.++.+.. ++| |.++||| .+.+++.+++.+|| .|+..|...
T Consensus 178 ~~~~~~~~~~~---~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i 233 (236)
T PF01791_consen 178 VELMRKAVEAA---PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNI 233 (236)
T ss_dssp HHHHHHHHHTH---SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHH
T ss_pred HHHHHHHHHhc---CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 45556666655 688 9999999 99999999999999 898888654
No 253
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=95.61 E-value=0.017 Score=52.12 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=38.8
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC--CCcEEEecccccc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL--GAQGICLGTRFVA 168 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l--GAdgV~~GT~fl~ 168 (300)
.+.++.++.+.+ ++||||+||+++-+|+.+...+ |..++.+|.++.-
T Consensus 189 dlel~~~l~~~~---~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 189 DEELVSKLGEWS---PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred CHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 467888888876 8999999999999999988554 6777888877654
No 254
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=95.60 E-value=0.16 Score=46.25 Aligned_cols=93 Identities=18% Similarity=0.246 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhcC--CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~~--~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+...++++|+... ++++|..- +.+.+..+++.++++|.+.- ..+ +.++++ +..+.+
T Consensus 167 ~~~~v~~~r~~~~~~~~I~vev~----t~eea~~A~~~gaD~I~ld~-~~~-e~l~~~----------------v~~i~~ 224 (269)
T cd01568 167 ITEAVKRARAAAPFEKKIEVEVE----TLEEAEEALEAGADIIMLDN-MSP-EELKEA----------------VKLLKG 224 (269)
T ss_pred HHHHHHHHHHhCCCCCeEEEecC----CHHHHHHHHHcCCCEEEECC-CCH-HHHHHH----------------HHHhcc
Confidence 3355777777642 44555442 34566666778888887752 222 223221 111111
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
. .++||.+.||| +.+.+.++...|+|++.+|+.+-..
T Consensus 225 ~---~~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 225 L---PRVLLEASGGI-TLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred C---CCeEEEEECCC-CHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 1 26899999999 5789999999999999998766554
No 255
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=95.59 E-value=0.2 Score=45.62 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=58.1
Q ss_pred HHHHHHHHhhc--CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 52 RDLIRKTRSLT--ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 52 ~~~i~~~r~~~--~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
...++++|+.. +++++|-.- +.+.+..+.+.++++|.+.- . . ...+.++++.
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev~----s~eea~~A~~~gaDyI~ld~-~-~--------------------~e~l~~~~~~ 222 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEVE----TLEQLKEALEAGADIIMLDN-M-S--------------------PEELREAVAL 222 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEEC----CHHHHHHHHHcCCCEEEECC-c-C--------------------HHHHHHHHHH
Confidence 34566666653 234444332 34556666677777777641 1 1 1233344444
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++. ++|+.+.||| +.+.+..+...|+|++.+|+.+--.
T Consensus 223 ~~~-~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 223 LKG-RVLLEASGGI-TLENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred cCC-CCcEEEECCC-CHHHHHHHHHcCCCEEEEEeeecCC
Confidence 321 5899999999 7899999999999999999976533
No 256
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.11 Score=45.74 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCc------HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH------NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~------~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.+.++|+.+++....+.-++++..... ....+.+.+.|+++|=+|.|-.+ .| .+.
T Consensus 107 ~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~---------~g-------AT~ 170 (228)
T COG0274 107 NWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFSA---------GG-------ATV 170 (228)
T ss_pred CHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCCC---------CC-------CCH
Confidence 578888889988887655445677765432 23467778889999977766421 01 123
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
.-+.-+++.+. .++.|=++|||+|.+|+.+++.+||.
T Consensus 171 edv~lM~~~vg-~~vgvKaSGGIrt~eda~~~i~aga~ 207 (228)
T COG0274 171 EDVKLMKETVG-GRVGVKASGGIRTAEDAKAMIEAGAT 207 (228)
T ss_pred HHHHHHHHHhc-cCceeeccCCcCCHHHHHHHHHHhHH
Confidence 32333333332 26889999999999999999999954
No 257
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=95.54 E-value=0.034 Score=55.57 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=55.4
Q ss_pred CCCcHHHHHHHHHCCCeEeec---cC----------hhchHHHHHHhhCCCCCcEEEccCCCCh-----------HHHHH
Q 022271 96 GEYSEELVLEAHSAGVKVVPQ---DG----------LISLLPMVVDLIGDRDIPIIAAGGIVDA-----------RGYVA 151 (300)
Q Consensus 96 G~~~~~~v~~~~~~G~~v~~~---~~----------~~~ll~~v~~~~~~~~iPViaaGGI~~g-----------~~v~a 151 (300)
|. |-++.+...+.|+.-++. .+ .+.++.++.+.+ .+||-+.|||.|- +++.+
T Consensus 267 gd-Pve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~---~ip~~vGGGIr~~~d~~~~~~~~~e~~~~ 342 (538)
T PLN02617 267 GK-PVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV---FVPLTVGGGIRDFTDANGRYYSSLEVASE 342 (538)
T ss_pred CC-HHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC---CCCEEEcCCccccccccccccchHHHHHH
Confidence 54 567788888888865543 11 255777777766 7999999999998 56899
Q ss_pred HHHCCCcEEEeccccccCc
Q 022271 152 ALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 152 al~lGAdgV~~GT~fl~t~ 170 (300)
+|.+|||-|.+||.-+..+
T Consensus 343 ~l~~GadkV~i~s~Av~~~ 361 (538)
T PLN02617 343 YFRSGADKISIGSDAVYAA 361 (538)
T ss_pred HHHcCCCEEEEChHHHhCh
Confidence 9999999999999777653
No 258
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=95.39 E-value=0.052 Score=51.64 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 123 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 123 l~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
..+|++.+ ++||++.|++ |++.+.+++.-| ||.|.||+.|++-++ +-+++.+
T Consensus 284 ~~~ik~~~---~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd------~~~k~~~ 336 (362)
T PRK10605 284 REKVRARF---HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPD------LVARLQR 336 (362)
T ss_pred HHHHHHHC---CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCcc------HHHHHhc
Confidence 34566665 7899999997 899999999998 999999999998753 5555555
No 259
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=95.26 E-value=0.49 Score=43.48 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=58.2
Q ss_pred HHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEcc--CCCChHHHHHHH
Q 022271 77 NENIKAIL-SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAG--GIVDARGYVAAL 153 (300)
Q Consensus 77 ~~~~~~~~-e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaG--GI~~g~~v~aal 153 (300)
.+.+...+ +.|++.+.+++|.... .-. +. . .-.+.+|.++++.+ ++|+++=| ||.+ +++.+++
T Consensus 155 ~eea~~f~~~tgvD~Lavs~Gt~hg-~~~-----~~---~-~l~~e~L~~i~~~~---~iPlv~hGgSGi~~-e~i~~~i 220 (282)
T TIGR01859 155 PDEAEQFVKETGVDYLAAAIGTSHG-KYK-----GE---P-GLDFERLKEIKELT---NIPLVLHGASGIPE-EQIKKAI 220 (282)
T ss_pred HHHHHHHHHHHCcCEEeeccCcccc-ccC-----CC---C-ccCHHHHHHHHHHh---CCCEEEECCCCCCH-HHHHHHH
Confidence 33344444 3677777776664211 000 10 0 11367888898887 79999999 8854 5799999
Q ss_pred HCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 154 SLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 154 ~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
..|+++|-++|-+..+ .....|+.+
T Consensus 221 ~~Gi~kiNv~T~l~~a----~~~~~~~~~ 245 (282)
T TIGR01859 221 KLGIAKINIDTDCRIA----FTAAIRKVL 245 (282)
T ss_pred HcCCCEEEECcHHHHH----HHHHHHHHH
Confidence 9999999999998765 344455555
No 260
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.13 E-value=0.31 Score=44.65 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=48.2
Q ss_pred cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC
Q 022271 76 HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL 155 (300)
Q Consensus 76 ~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l 155 (300)
+.+.++.+++.++|+|.+. ....+.++ ++++.++ .++|+.++||| +.+.+.++...
T Consensus 198 tleea~eA~~~gaD~I~LD--~~~~e~l~--------------------~~v~~~~-~~i~leAsGGI-t~~ni~~~a~t 253 (277)
T PRK05742 198 SLDELRQALAAGADIVMLD--ELSLDDMR--------------------EAVRLTA-GRAKLEASGGI-NESTLRVIAET 253 (277)
T ss_pred CHHHHHHHHHcCCCEEEEC--CCCHHHHH--------------------HHHHHhC-CCCcEEEECCC-CHHHHHHHHHc
Confidence 3566666777777777663 22223233 2223222 16899999999 79999999999
Q ss_pred CCcEEEeccccccC
Q 022271 156 GAQGICLGTRFVAS 169 (300)
Q Consensus 156 GAdgV~~GT~fl~t 169 (300)
|+|++.+|+.+-..
T Consensus 254 GvD~Isvg~lt~s~ 267 (277)
T PRK05742 254 GVDYISIGAMTKDV 267 (277)
T ss_pred CCCEEEEChhhcCC
Confidence 99999999865443
No 261
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=95.12 E-value=0.18 Score=46.08 Aligned_cols=91 Identities=23% Similarity=0.258 Sum_probs=55.7
Q ss_pred HHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhh
Q 022271 52 RDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLI 130 (300)
Q Consensus 52 ~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~ 130 (300)
.+.++++|+.. +++++|-.- +.+.+..+.+.++++|-+.- ..|.. ++ .++..++...
T Consensus 171 ~~av~~~R~~~~~~~IgVev~----t~eea~~A~~~gaD~I~ld~-~~p~~-l~----------------~~~~~~~~~~ 228 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD----SLEEALAAAEAGADILQLDK-FSPEE-LA----------------ELVPKLRSLA 228 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC----CHHHHHHHHHcCCCEEEECC-CCHHH-HH----------------HHHHHHhccC
Confidence 45666676653 234444322 23455556678888887752 22221 11 1222222221
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.++|+++.||| +.+.+.++...|+|++.+|.-+-
T Consensus 229 --~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai~~ 262 (272)
T cd01573 229 --PPVLLAAAGGI-NIENAAAYAAAGADILVTSAPYY 262 (272)
T ss_pred --CCceEEEECCC-CHHHHHHHHHcCCcEEEEChhhc
Confidence 26999999999 88999999999999997776543
No 262
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=95.10 E-value=0.19 Score=40.62 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=44.0
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC---CCCcEEEccCCC-ChHH----HHHH
Q 022271 85 SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD---RDIPIIAAGGIV-DARG----YVAA 152 (300)
Q Consensus 85 e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~---~~iPViaaGGI~-~g~~----v~aa 152 (300)
++|.++|.+....|++++++.+.+.+..++.. ..++..++++.+.+++ .++||+..|.+. .+.+ ..+.
T Consensus 25 ~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L 104 (128)
T cd02072 25 EAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRF 104 (128)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHH
Confidence 34555555544444555555555555444432 2244455555555432 268899988875 2233 3557
Q ss_pred HHCCCcEEEe
Q 022271 153 LSLGAQGICL 162 (300)
Q Consensus 153 l~lGAdgV~~ 162 (300)
.++|.++|.=
T Consensus 105 ~~~Gv~~vf~ 114 (128)
T cd02072 105 KEMGFDRVFA 114 (128)
T ss_pred HHcCCCEEEC
Confidence 7899998763
No 263
>PRK06852 aldolase; Validated
Probab=95.09 E-value=0.69 Score=42.93 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=86.0
Q ss_pred CccceecCC--------CCCCCCcHH-HHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh-hcCCcEEeeeecC-----
Q 022271 9 FEYGIVQAP--------LGPDISGPE-LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGVGVVLA----- 73 (300)
Q Consensus 9 ~~~Pii~ap--------M~~g~s~~~-la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~-~~~~P~gvnl~~~----- 73 (300)
+++-+-.+| +. |..+++ +...+.++|. ..+.. +.- .++.... ..+.|+-+.+-..
T Consensus 38 ~DHG~~~Gp~~~~~~~~~~-gl~dp~~~i~~~~~~g~-dav~~----~~G----~l~~~~~~~~~~~lIlkl~~~t~l~~ 107 (304)
T PRK06852 38 GDQKIEHLNDDFYGEGIAK-DDADPEHLFRIASKAKI-GVFAT----QLG----LIARYGMDYPDVPYLVKLNSKTNLVK 107 (304)
T ss_pred ccCCcccCCcccccccCCc-ccCCHHHHHHHHHhcCC-CEEEe----CHH----HHHhhccccCCCcEEEEECCCCCcCC
Confidence 567777788 86 787775 7777777664 33322 122 2222211 1345655554431
Q ss_pred ----CCc---HHHHHHHHHcC------CcEEEE--cCCCCc--------HHHHHHHHHCCCeEeec--------------
Q 022271 74 ----FPH---NENIKAILSEK------VAVLQV--SWGEYS--------EELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 74 ----~~~---~~~~~~~~e~g------~~~i~~--~~G~~~--------~~~v~~~~~~G~~v~~~-------------- 116 (300)
.+. ...++.++..| ++.|.+ .+|... .++++++++.|+.++..
T Consensus 108 ~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~ 187 (304)
T PRK06852 108 TSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDP 187 (304)
T ss_pred cccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccH
Confidence 111 12366677766 666654 345421 24556677778777642
Q ss_pred ----------------------c-----ChhchHHHHHHhhCCCCCcEEEccCCCCh-HH----HHHHHH-CCCcEEEec
Q 022271 117 ----------------------D-----GLISLLPMVVDLIGDRDIPIIAAGGIVDA-RG----YVAALS-LGAQGICLG 163 (300)
Q Consensus 117 ----------------------~-----~~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~----v~aal~-lGAdgV~~G 163 (300)
. +....+.++++... .+||+.+||=... ++ +..++. .||.||.+|
T Consensus 188 ~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g--~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~G 265 (304)
T PRK06852 188 HLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAG--RTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATG 265 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCC--CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeec
Confidence 1 22345666666542 6999999998853 33 445667 899999999
Q ss_pred cccccC
Q 022271 164 TRFVAS 169 (300)
Q Consensus 164 T~fl~t 169 (300)
+-..-.
T Consensus 266 RNIfQ~ 271 (304)
T PRK06852 266 RNIHQK 271 (304)
T ss_pred hhhhcC
Confidence 654444
No 264
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.05 E-value=0.2 Score=40.74 Aligned_cols=80 Identities=24% Similarity=0.278 Sum_probs=46.6
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC---CCCcEEEccCCCChHHHHHHHHCCC
Q 022271 85 SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 85 e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~---~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
..|.+++....-.+++++++...+.+..++.. ...+..++++.+.+++ .+++|++.|.+ ..++......+|.
T Consensus 28 ~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~-~~~~~~~l~~~Gv 106 (132)
T TIGR00640 28 DLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVI-PPQDFDELKEMGV 106 (132)
T ss_pred hCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCC-ChHhHHHHHHCCC
Confidence 34555555543334555555555555555443 2244566666666643 14666664445 5678888999999
Q ss_pred cEEE-eccc
Q 022271 158 QGIC-LGTR 165 (300)
Q Consensus 158 dgV~-~GT~ 165 (300)
|++. .||.
T Consensus 107 d~~~~~gt~ 115 (132)
T TIGR00640 107 AEIFGPGTP 115 (132)
T ss_pred CEEECCCCC
Confidence 8765 3443
No 265
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=94.99 E-value=0.39 Score=50.18 Aligned_cols=48 Identities=21% Similarity=0.428 Sum_probs=39.9
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
..+.++++.++..++||+|-||| +.+++.+++..||+||.+-+.++.+
T Consensus 153 ~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 153 DGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred HHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCC
Confidence 46777777662113999999999 8999999999999999999999854
No 266
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.93 E-value=1.2 Score=41.05 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=44.7
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCCh-HHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g-~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+.++.++.+++ ++|++.-||=..+ +++.+++.+|...|-+||-+..+ .....|+.+
T Consensus 188 ~~~l~~I~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a----~~~~~~~~l 244 (283)
T PRK07998 188 IPLLKRIAEVS---PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKA----FITTVGKAY 244 (283)
T ss_pred HHHHHHHHhhC---CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHH----HHHHHHHHH
Confidence 56788888876 8999999999988 67888999999999999987655 234455544
No 267
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.93 E-value=0.1 Score=46.96 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=52.9
Q ss_pred cHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++.....+.|...+.. -|.+..+.+++..+ ++||+.-..|.|..++..+..+|||+|.+=.+++-
T Consensus 63 ~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v---~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~ 136 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSEL---KIPVLRKDFILDEIQIREARAFGASAILLIVRILT 136 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhc---CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCC
Confidence 455666666666654432 45788999999987 79999999999999999999999999977555543
No 268
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.69 E-value=0.66 Score=41.99 Aligned_cols=115 Identities=20% Similarity=0.294 Sum_probs=70.9
Q ss_pred CCcEEeeeecCC-----Cc----HHHHHHHHHcCCcEEEE--cCCCCc--------HHHHHHHHHCCCeEeec-------
Q 022271 63 ERPFGVGVVLAF-----PH----NENIKAILSEKVAVLQV--SWGEYS--------EELVLEAHSAGVKVVPQ------- 116 (300)
Q Consensus 63 ~~P~gvnl~~~~-----~~----~~~~~~~~e~g~~~i~~--~~G~~~--------~~~v~~~~~~G~~v~~~------- 116 (300)
+.|+-+.+.... +. ...++.++..|++.|.+ .+|+.. ..++..+++.|..++..
T Consensus 77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~ 156 (265)
T COG1830 77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPA 156 (265)
T ss_pred CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCc
Confidence 667777665531 11 23467777888888764 456543 24455567778776542
Q ss_pred -------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCC-h-----HHHHHHHHCCCcE
Q 022271 117 -------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVD-A-----RGYVAALSLGAQG 159 (300)
Q Consensus 117 -------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~-g-----~~v~aal~lGAdg 159 (300)
.+...-+.++++.. .+||+.+||=.+ . +-...++..||.|
T Consensus 157 ~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~---~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G 233 (265)
T COG1830 157 IKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVAAC---GVPVVIAGGPKTETEREFLEMVTAAIEAGAMG 233 (265)
T ss_pred ccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHhC---CCCEEEeCCCCCCChHHHHHHHHHHHHccCcc
Confidence 12234556666665 699999999888 2 2245677799999
Q ss_pred EEeccccccCcccCCCHHHHHHHH
Q 022271 160 ICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 160 V~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
+.+|+-..-.+ .+...-++|.
T Consensus 234 ~~~GRNifQ~~---~p~~m~~Ai~ 254 (265)
T COG1830 234 VAVGRNIFQHE---DPEAMVKAIQ 254 (265)
T ss_pred hhhhhhhhccC---ChHHHHHHHH
Confidence 99997655443 2444444443
No 269
>PRK08227 autoinducer 2 aldolase; Validated
Probab=94.63 E-value=0.23 Score=45.19 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=86.1
Q ss_pred CccceecCCCCCCCCcH-HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHH-hhcCCcEEeeeecCC-----Cc----H
Q 022271 9 FEYGIVQAPLGPDISGP-ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTR-SLTERPFGVGVVLAF-----PH----N 77 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~-~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r-~~~~~P~gvnl~~~~-----~~----~ 77 (300)
+++-+..+|+. |.-+. +....+.. | ...+.. +.-. ++... ...+.|+-+.+-... ++ .
T Consensus 29 ~DHG~~~Gp~~-gl~~~~~~~~~i~~-~-~da~~~----~~G~----~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~ 97 (264)
T PRK08227 29 FDHGYFQGPTT-GLERIDINIAPLFP-Y-ADVLMC----TRGI----LRSVVPPATNKPVVLRASGGNSILKELSNEAVA 97 (264)
T ss_pred CCCccccCCCc-cccChHHHHHHHhh-c-CCEEEe----ChhH----HHhcccccCCCcEEEEEcCCCCCCCCCCcccce
Confidence 67778888887 66543 44445554 4 322221 2222 22221 223456656554321 11 1
Q ss_pred HHHHHHHHcCCcEEEEc--CCCCc--------HHHHHHHHHCCCeEeec-------------------------------
Q 022271 78 ENIKAILSEKVAVLQVS--WGEYS--------EELVLEAHSAGVKVVPQ------------------------------- 116 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~--~G~~~--------~~~v~~~~~~G~~v~~~------------------------------- 116 (300)
..++.+++.|++.|+++ +|... .+++++++++|+.++..
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~ 177 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKT 177 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEec
Confidence 24777888899888753 45431 24556677888877653
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCCh-HH----HHHHHHCCCcEEEeccccccC
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RG----YVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~----v~aal~lGAdgV~~GT~fl~t 169 (300)
.-+-.-+.+++++. .+||+.+||=... ++ +..++..||.||.+|+-..-.
T Consensus 178 ~y~~~~f~~vv~a~---~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 178 YYVEEGFERITAGC---PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred CCCHHHHHHHHHcC---CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 00113456666654 7999999998853 33 445677999999999665554
No 270
>PLN02411 12-oxophytodienoate reductase
Probab=94.54 E-value=0.058 Score=51.87 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=38.8
Q ss_pred hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
+..++++.+ ++|||++|+| +.+.+.+++..| ||.|.+|+.|++-++
T Consensus 304 ~a~~ik~~v---~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iadPd 350 (391)
T PLN02411 304 LMRTLRRAY---QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISNPD 350 (391)
T ss_pred HHHHHHHHc---CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhCcc
Confidence 335566666 7999999999 678899999998 999999999998754
No 271
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=94.42 E-value=0.17 Score=47.39 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhcCCcEEeeeecCCCc--HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHH
Q 022271 49 DYLRDLIRKTRSLTERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMV 126 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~~P~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v 126 (300)
+...+++++.++..+.|+.+|+....+. .+.++.+.+.+++.|.++.++++.+- ...|...- .....++..+
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~----~~~g~~~~--~~~~eiv~~v 158 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDP----DISGAEVE--QRYLDILRAV 158 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC----CcccchHH--HHHHHHHHHH
Confidence 4445555555544578999999775442 35667777789999999988743110 00111000 1134566666
Q ss_pred HHhhCCCCCcEEEc--cCCCChHHHHHH-HHCCCcEEEecccc
Q 022271 127 VDLIGDRDIPIIAA--GGIVDARGYVAA-LSLGAQGICLGTRF 166 (300)
Q Consensus 127 ~~~~~~~~iPViaa--GGI~~g~~v~aa-l~lGAdgV~~GT~f 166 (300)
++.+ ++||++= ..+.+-.+++++ ...|||++.+-.++
T Consensus 159 ~~~~---~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 159 KSAV---TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred Hhcc---CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 6665 7898875 344455566554 56899999986664
No 272
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=94.41 E-value=1.2 Score=45.50 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=88.5
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHH-HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDY-LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~-l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~ 94 (300)
|+++.+-+..+.++| .+|++... -+.++++ .++.++.++. ..+--|.++.+.+.++..+.+.+.+.++|.++
T Consensus 9 Git~~eda~~a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~--~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLH 86 (610)
T PRK13803 9 GIKDSALISKAVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRK--AGGRPVGVFVNESAKAMLKFSKKNGIDFVQLH 86 (610)
T ss_pred CCCcHHHHHHHHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCC--CCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 577777777777777 59998422 2456777 4555554432 12234677877766777888888999999999
Q ss_pred CCCCc---HHHHHHHHHCCCeEeecc-----C-------------------------------hhchHHHHHHhhCCCCC
Q 022271 95 WGEYS---EELVLEAHSAGVKVVPQD-----G-------------------------------LISLLPMVVDLIGDRDI 135 (300)
Q Consensus 95 ~G~~~---~~~v~~~~~~G~~v~~~~-----~-------------------------------~~~ll~~v~~~~~~~~i 135 (300)
|..+ .+.++.+++.++.++... . .+++++. .. .+.
T Consensus 87 -G~e~~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~fdw~~~~~----~~-~~~ 160 (610)
T PRK13803 87 -GAESKAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGSGKSFDWEKFYN----YN-FKF 160 (610)
T ss_pred -CCCCcccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCCCCccChHHhhh----cc-cCC
Confidence 4445 677777776666555320 0 0111111 10 147
Q ss_pred cEEEccCCCChHHHHHHHHC-CCc--EEEeccccc
Q 022271 136 PIIAAGGIVDARGYVAALSL-GAQ--GICLGTRFV 167 (300)
Q Consensus 136 PViaaGGI~~g~~v~aal~l-GAd--gV~~GT~fl 167 (300)
|++.|||| +++.+..++.. ... ||=+-|.+=
T Consensus 161 p~iLAGGL-~peNV~~ai~~~~p~~~gVDvsSGvE 194 (610)
T PRK13803 161 PFFLSGGL-SPTNFDRIINLTHPQILGIDVSSGFE 194 (610)
T ss_pred cEEEEeCC-CHHHHHHHHhhhCCCceEEEccCccc
Confidence 99999999 56689999974 555 777766553
No 273
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=94.26 E-value=0.29 Score=41.31 Aligned_cols=40 Identities=35% Similarity=0.488 Sum_probs=32.0
Q ss_pred hHHHHHHhhC-CCCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 122 LLPMVVDLIG-DRDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 122 ll~~v~~~~~-~~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
..|++.+.+. +.++||||+|=|.+-+++.+||..||-+|-
T Consensus 131 v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 131 VMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEe
Confidence 4455554432 247999999999999999999999999886
No 274
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=94.21 E-value=0.81 Score=44.70 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=50.7
Q ss_pred HHHHHHHH-HCCCeEeec-----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC--CcEEEeccc
Q 022271 100 EELVLEAH-SAGVKVVPQ-----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG--AQGICLGTR 165 (300)
Q Consensus 100 ~~~v~~~~-~~G~~v~~~-----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG--AdgV~~GT~ 165 (300)
+.++.++. +.|...+.. ...+..+-++.+.++. .+|||..|.|-+-+|-..-+..+ .++||+|..
T Consensus 409 ~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~-~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRG 487 (614)
T KOG2333|consen 409 HELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKS-ALPLIGNGDILSWEDWYERLNQNPNVDSVMIARG 487 (614)
T ss_pred HHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhccc-CceeEecCccccHHHHHHHhhcCCCcceEEeecc
Confidence 45666665 566554432 2367899999998752 49999999999999988888876 899999975
Q ss_pred cc
Q 022271 166 FV 167 (300)
Q Consensus 166 fl 167 (300)
-|
T Consensus 488 AL 489 (614)
T KOG2333|consen 488 AL 489 (614)
T ss_pred cc
Confidence 44
No 275
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=93.88 E-value=0.18 Score=44.66 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=48.7
Q ss_pred cHHHHHHHHHCCCeEeec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH--CCCcEEEeccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS--LGAQGICLGTRFV 167 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~--lGAdgV~~GT~fl 167 (300)
|.++++.+.+.|...+|. ...+.++.++.+. +||...|||++.+++..++. .||+-|.+||..+
T Consensus 38 P~~~a~~~~~~g~~~l~ivDLd~~~~~~~n~~~i~~i~~~-----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 38 PDDAAKVIEEIGARFIYIADLDRIVGLGDNFSLLSKLSKR-----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHHcCCCEEEEEEcccccCCcchHHHHHHHHhh-----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 456666666666655443 1235566666653 59999999999999999976 2699999999888
Q ss_pred cCc
Q 022271 168 ASE 170 (300)
Q Consensus 168 ~t~ 170 (300)
-.+
T Consensus 113 ~~p 115 (221)
T TIGR00734 113 DIT 115 (221)
T ss_pred CCH
Confidence 643
No 276
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.85 E-value=0.59 Score=38.17 Aligned_cols=81 Identities=11% Similarity=0.007 Sum_probs=47.5
Q ss_pred HHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC---CCCcEEEccCCCCh-----HHHH
Q 022271 83 ILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD---RDIPIIAAGGIVDA-----RGYV 150 (300)
Q Consensus 83 ~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~---~~iPViaaGGI~~g-----~~v~ 150 (300)
+...|.++|.+....|++++++.+.+.+..++.. ......++++.+.+++ .+++|++.|.+.++ ++..
T Consensus 27 lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~ 106 (137)
T PRK02261 27 LTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEK 106 (137)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHH
Confidence 3345666666665556666666666655555442 1122333444443321 26888998888544 3456
Q ss_pred HHHHCCCcEEEec
Q 022271 151 AALSLGAQGICLG 163 (300)
Q Consensus 151 aal~lGAdgV~~G 163 (300)
.+..+|.|.|.-+
T Consensus 107 ~l~~~G~~~vf~~ 119 (137)
T PRK02261 107 KFKEMGFDRVFPP 119 (137)
T ss_pred HHHHcCCCEEECc
Confidence 7778998888763
No 277
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=93.72 E-value=0.37 Score=45.07 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCc--EEEEcCCCCcH--HHHHHHHHCC--CeEeec-------
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA--VLQVSWGEYSE--ELVLEAHSAG--VKVVPQ------- 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~--~i~~~~G~~~~--~~v~~~~~~G--~~v~~~------- 116 (300)
.+.+.+.++-+.++. +++ +...+.+++...+.+.+.+ .+..+.|..++ +.+..+.++| ..++..
T Consensus 45 ~in~~LA~~a~~~G~-~~i--~hK~~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s 121 (321)
T TIGR01306 45 IIDEKLAEQLAENGY-FYI--MHRFDEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHS 121 (321)
T ss_pred hhhHHHHHHHHHcCC-EEE--EecCCHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCch
Confidence 555666665444322 222 1111333434444444332 34445565433 4555666777 355443
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
...+..+..+++.. +.|.+.+|.|.+.+++..++..|||+|.+|
T Consensus 122 ~~~~~~i~~i~~~~---p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 122 NSVINMIKHIKTHL---PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHHHHHHhC---CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 22455677777765 688999999999999999999999999998
No 278
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=93.63 E-value=0.66 Score=37.81 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=46.5
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC---CCCcEEEccCCCC-hHHH----HH
Q 022271 84 LSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD---RDIPIIAAGGIVD-ARGY----VA 151 (300)
Q Consensus 84 ~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~---~~iPViaaGGI~~-g~~v----~a 151 (300)
.++|.+++.+....|++++++.+++.+..++.. ..++..++++.+.+++ .+++|+..|++.- ..|. .+
T Consensus 26 ~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~ 105 (134)
T TIGR01501 26 TNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKR 105 (134)
T ss_pred HHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHH
Confidence 345666666655555666666666666655543 2245556666666532 2566666665432 2332 35
Q ss_pred HHHCCCcEEEec
Q 022271 152 ALSLGAQGICLG 163 (300)
Q Consensus 152 al~lGAdgV~~G 163 (300)
+.++|.++|.=+
T Consensus 106 l~~~Gv~~vF~p 117 (134)
T TIGR01501 106 FKEMGFDRVFAP 117 (134)
T ss_pred HHHcCCCEEECc
Confidence 777999888754
No 279
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=93.50 E-value=1.9 Score=39.82 Aligned_cols=46 Identities=24% Similarity=0.412 Sum_probs=38.6
Q ss_pred hchHHHHHHhhCCCCCcEEEccC--CCChHHHHHHHHCCCcEEEecccccc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGG--IVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGG--I~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+.+|.++.+.+. ++|+++=|| |.+ +++.+++..|++.|-++|.+..
T Consensus 190 ~e~L~~i~~~~~--~iPlVlhGGSGi~~-e~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 190 LDHLEKLTEAVP--GFPIVLHGGSGIPD-DQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHHHHHHHHhcc--CCCEEEECCCCCCH-HHHHHHHHcCCCEEEEccHHHH
Confidence 457788888762 499999999 744 6799999999999999999886
No 280
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.49 E-value=0.91 Score=41.83 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.+.++++|+.. |+...+.......+.++.+++.|+++|-+.--. |++ ++++ ++.
T Consensus 182 ~i~~av~~~r~~~--~~~~kIeVEv~tleea~~a~~agaDiImLDnms-pe~-l~~a--------------------v~~ 237 (290)
T PRK06559 182 SVQKAIAQARAYA--PFVKMVEVEVESLAAAEEAAAAGADIIMLDNMS-LEQ-IEQA--------------------ITL 237 (290)
T ss_pred cHHHHHHHHHHhC--CCCCeEEEECCCHHHHHHHHHcCCCEEEECCCC-HHH-HHHH--------------------HHH
Confidence 4566777777654 333334444456778888889999999887333 333 3321 122
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+++ ++.+-++||| +.+.+.++-..|+|.+.+|..+--.
T Consensus 238 ~~~-~~~leaSGGI-~~~ni~~yA~tGVD~Is~galthsa 275 (290)
T PRK06559 238 IAG-RSRIECSGNI-DMTTISRFRGLAIDYVSSGSLTHSA 275 (290)
T ss_pred hcC-ceEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 221 5789999999 7889999999999999999866533
No 281
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.46 E-value=0.78 Score=42.07 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 50 YLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 50 ~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
.+.+.++++|+.. .+++- ......+++..+++.|+++|-+.-- .| +.++++ +..+..
T Consensus 168 ~i~~av~~~r~~~~~~kIe----VEv~~leea~~a~~agaDiI~LDn~-~~-e~l~~~----------------v~~l~~ 225 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVE----VEVESLEDALKAAKAGADIIMLDNM-TP-EEIREV----------------IEALKR 225 (278)
T ss_pred HHHHHHHHHHHhCCCCcEE----EEeCCHHHHHHHHHcCcCEEEECCC-CH-HHHHHH----------------HHHHHh
Confidence 3566677776642 23332 2223567777788888888887632 23 333321 111221
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.-...++.+.++||| +.+.+.++...|+|.+.+|+.+-
T Consensus 226 ~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 226 EGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred cCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 110125889999999 99999999999999999998765
No 282
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.33 E-value=0.31 Score=45.64 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=55.6
Q ss_pred cHHHHHHHHHcCC---cEEEEcCCCCc--HHHHHHHHHCC--CeEeec-------cChhchHHHHHHhhCCCCCcEEEcc
Q 022271 76 HNENIKAILSEKV---AVLQVSWGEYS--EELVLEAHSAG--VKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAG 141 (300)
Q Consensus 76 ~~~~~~~~~e~g~---~~i~~~~G~~~--~~~v~~~~~~G--~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaG 141 (300)
.+++.+.+..... ..+.++.|.-+ .+.++.+.++| ..++.. ...+..+..+++.. .-+.|.+|
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~---p~~~viaG 156 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAF---PEHTIMAG 156 (343)
T ss_pred HHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhC---CCCeEEEe
Confidence 3445555544222 23444556533 24455566664 665543 23566778888765 44678899
Q ss_pred CCCChHHHHHHHHCCCcEEEec
Q 022271 142 GIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 142 GI~~g~~v~aal~lGAdgV~~G 163 (300)
.|.|++++..++.+|||+|.+|
T Consensus 157 NV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 157 NVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred cccCHHHHHHHHHcCCCEEEEc
Confidence 9999999999999999999876
No 283
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=93.29 E-value=0.57 Score=44.98 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhc-CCcEEeeeecCCC---cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc-Chhch
Q 022271 48 PDYLRDLIRKTRSLT-ERPFGVGVVLAFP---HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD-GLISL 122 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~-~~P~gvnl~~~~~---~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~-~~~~l 122 (300)
.+...++++++++.. +.|+-++++.... +.+.++.+.+.|++.+.+++.||... -.+..|..+..+. .+-.+
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~---~~r~~g~~~gq~~e~~~~i 173 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM---PERKMGAAVGQDCDLLEEV 173 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC---CcCccchhhccCHHHHHHH
Confidence 344444555665444 6799899876333 24567777788999999999887421 1112233333321 12223
Q ss_pred HHHHHHhhCCCCCcEEE--ccCCCChHHHHH-HHHCCCcEEEeccccc
Q 022271 123 LPMVVDLIGDRDIPIIA--AGGIVDARGYVA-ALSLGAQGICLGTRFV 167 (300)
Q Consensus 123 l~~v~~~~~~~~iPVia--aGGI~~g~~v~a-al~lGAdgV~~GT~fl 167 (300)
+..|++.. ++||++ +-.+.+-..++. +...|||||.+-..+.
T Consensus 174 ~~~Vk~~~---~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 174 CGWINAKA---TVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred HHHHHHhh---cCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 34444443 688875 445666667666 5668999999976664
No 284
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=93.19 E-value=0.5 Score=38.82 Aligned_cols=83 Identities=23% Similarity=0.367 Sum_probs=58.6
Q ss_pred HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC---CCCcEEEccCCCChHHHHH
Q 022271 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVA 151 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~---~~iPViaaGGI~~g~~v~a 151 (300)
....+.+.|.++|....-.+|.+++...-+..+.++.. -+-..++|++++++++ .++. +.+||+-...|..+
T Consensus 32 ia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~-v~~GGvip~~d~~~ 110 (143)
T COG2185 32 IARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDIL-VVVGGVIPPGDYQE 110 (143)
T ss_pred HHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceE-EeecCccCchhHHH
Confidence 34555577888887655455677777776666666553 2356788888888753 2455 57888888889888
Q ss_pred HHHCCCcEEEe
Q 022271 152 ALSLGAQGICL 162 (300)
Q Consensus 152 al~lGAdgV~~ 162 (300)
...+|.+++.-
T Consensus 111 l~~~G~~~if~ 121 (143)
T COG2185 111 LKEMGVDRIFG 121 (143)
T ss_pred HHHhCcceeeC
Confidence 88899998863
No 285
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=93.17 E-value=1.1 Score=41.04 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHH
Q 022271 49 DYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVV 127 (300)
Q Consensus 49 ~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~ 127 (300)
+.+.+.++++|+.. .+++-|-+ ...++++.+++.|+++|.+. +.+|+++.+.. ..+.
T Consensus 173 ~~i~~av~~~r~~~~~~kIeVEv----~tleea~ea~~~GaDiI~lD-n~~~e~l~~~v-----------------~~l~ 230 (277)
T TIGR01334 173 FDWGGAIGRLKQTAPERKITVEA----DTIEQALTVLQASPDILQLD-KFTPQQLHHLH-----------------ERLK 230 (277)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEC----CCHHHHHHHHHcCcCEEEEC-CCCHHHHHHHH-----------------HHHh
Confidence 36778888888753 34454444 35778888889999999998 44444433321 1121
Q ss_pred HhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 128 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 128 ~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.. ..++.|-++||| +.+.+.++...|+|.+.+|..+.+
T Consensus 231 ~~--~~~~~leasGGI-~~~ni~~ya~~GvD~is~gal~~a 268 (277)
T TIGR01334 231 FF--DHIPTLAAAGGI-NPENIADYIEAGIDLFITSAPYYA 268 (277)
T ss_pred cc--CCCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcceec
Confidence 11 126789999999 788999999999999999987654
No 286
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=93.12 E-value=0.29 Score=46.32 Aligned_cols=61 Identities=28% Similarity=0.432 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCeEeecc-------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 100 EELVLEAHSAGVKVVPQD-------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~~-------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+.++.+.++|+.++..+ ..+..+..+++... ++||| +|.|.|++.+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~--~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFP--DVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHST--TSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCC--CceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 566777888998887642 24567777777763 58877 788999999999999999999997
No 287
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.11 E-value=1.1 Score=41.15 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.+.++++|+.. |+..++.....+.+.+..+++.|+++|-+.-- .|++ ++++ ++.
T Consensus 178 ~i~~av~~~r~~~--~~~~kIeVEv~slee~~ea~~~gaDiImLDn~-s~e~-l~~a--------------------v~~ 233 (281)
T PRK06543 178 DLTEALRHVRAQL--GHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNF-SLDD-LREG--------------------VEL 233 (281)
T ss_pred HHHHHHHHHHHhC--CCCCcEEEEeCCHHHHHHHHhcCCCEEEECCC-CHHH-HHHH--------------------HHH
Confidence 4777888888764 33233344444677888888999999999733 3443 3321 111
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+++ ...+-++||| |.+.+.++...|.|.+.+|..+--
T Consensus 234 ~~~-~~~leaSGgI-~~~ni~~yA~tGVD~Is~galths 270 (281)
T PRK06543 234 VDG-RAIVEASGNV-NLNTVGAIASTGVDVISVGALTHS 270 (281)
T ss_pred hCC-CeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccC
Confidence 111 4579999999 778899999999999999985543
No 288
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=92.88 E-value=2.4 Score=37.66 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=28.1
Q ss_pred CcEEEccCCCChH-----------HHHHHHHCCCcEEEeccccccCcc
Q 022271 135 IPIIAAGGIVDAR-----------GYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 135 iPViaaGGI~~g~-----------~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
-.+...+||. +. ....++..|||++++|+...-++.
T Consensus 169 ~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~d 215 (230)
T PRK00230 169 DFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAAD 215 (230)
T ss_pred ceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCC
Confidence 3567789996 33 577889999999999998877643
No 289
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=92.85 E-value=0.65 Score=42.04 Aligned_cols=99 Identities=12% Similarity=0.170 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCC---cH----HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccCh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFP---HN----ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGL 119 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~---~~----~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~ 119 (300)
+.+.+.++|+++++....+.-++++.... .+ ...+.+.+.|+++|=++.|--+. |. +...
T Consensus 113 ~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~---------gA----t~ed 179 (257)
T PRK05283 113 NEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPV---------NA----TLEA 179 (257)
T ss_pred cHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCC---------CC----CHHH
Confidence 45677788888887654234456555432 22 24567778888888776653210 00 0011
Q ss_pred hchHHHHHHhhC-CCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 120 ISLLPMVVDLIG-DRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 120 ~~ll~~v~~~~~-~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
..++.+...... ..++-|=++|||.|.+++.+++.+|.+
T Consensus 180 v~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~ 219 (257)
T PRK05283 180 ARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADE 219 (257)
T ss_pred HHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHH
Confidence 222222221110 125789999999999999999998765
No 290
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=92.78 E-value=1.7 Score=41.86 Aligned_cols=131 Identities=17% Similarity=0.174 Sum_probs=90.7
Q ss_pred CCCcHHHHHHHHh------CCceEEecCC------------CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc---HHH
Q 022271 21 DISGPELVAAVAN------AGGLGLLRAP------------DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH---NEN 79 (300)
Q Consensus 21 g~s~~~la~avs~------aGglG~i~~~------------~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~---~~~ 79 (300)
|.+++++|.+++. +|+.=-.+|. -..+|+.+...|..+-+....|+-+++-.-... -+.
T Consensus 89 gT~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~l 168 (477)
T KOG2334|consen 89 GTASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKL 168 (477)
T ss_pred cCCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHH
Confidence 5789999998874 4432222221 135789888888888777788988887654332 456
Q ss_pred HHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCC---hHHHHHHHH-C
Q 022271 80 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVD---ARGYVAALS-L 155 (300)
Q Consensus 80 ~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~---g~~v~aal~-l 155 (300)
++.+..-|+.++.+++-.- ++--+ + ..+-..+.++.+++. .||||+.||+.+ ..|+..... .
T Consensus 169 v~ri~~tgi~ai~vh~rt~-d~r~~---~--------~~~~~~i~~i~~~~~--~V~vi~ng~~~~~e~y~Di~~~~~~~ 234 (477)
T KOG2334|consen 169 VKRICATGIAAITVHCRTR-DERNQ---E--------PATKDYIREIAQACQ--MVPVIVNGGSMDIEQYSDIEDFQEKT 234 (477)
T ss_pred HHHHHhcCCceEEEEeecc-ccCCC---C--------CCCHHHHHHHHHHhc--cceEeeccchhhHHhhhhHHHHHHHh
Confidence 7888889999998885221 10000 0 235567778888873 499999999999 777777655 6
Q ss_pred CCcEEEeccc
Q 022271 156 GAQGICLGTR 165 (300)
Q Consensus 156 GAdgV~~GT~ 165 (300)
|+++|++...
T Consensus 235 ~~~~vmiAR~ 244 (477)
T KOG2334|consen 235 GADSVMIARA 244 (477)
T ss_pred ccchhhhhHh
Confidence 9999999763
No 291
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.75 E-value=6.4 Score=35.99 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEE
Q 022271 49 DYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~ 93 (300)
++=-+.++++|+.++.|+---++ +.++++.+.+. +|++.+
T Consensus 73 eeGL~iL~~vk~~~GlpvvTeV~----~~~~~~~~ae~-vDilQI 112 (281)
T PRK12457 73 DEGLRIFEEVKARFGVPVITDVH----EVEQAAPVAEV-ADVLQV 112 (281)
T ss_pred HHHHHHHHHHHHHHCCceEEEeC----CHHHHHHHhhh-CeEEee
Confidence 44556788888887777754443 45566666665 666655
No 292
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=92.70 E-value=1.5 Score=37.12 Aligned_cols=94 Identities=15% Similarity=0.207 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhcC-Cc-EEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLTE-RP-FGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~~-~P-~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+.+.++++|+... .+ +.|- ....+.++.+++.++++|-+.-.. | +.+++ .+.++.
T Consensus 66 i~~av~~~~~~~~~~~~I~VE----v~~~ee~~ea~~~g~d~I~lD~~~-~-~~~~~----------------~v~~l~- 122 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVE----VENLEEAEEALEAGADIIMLDNMS-P-EDLKE----------------AVEELR- 122 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEE----ESSHHHHHHHHHTT-SEEEEES-C-H-HHHHH----------------HHHHHH-
T ss_pred HHHHHHHHHHhCCCCceEEEE----cCCHHHHHHHHHhCCCEEEecCcC-H-HHHHH----------------HHHHHh-
Confidence 5566777777532 22 3332 235778888999999999987443 3 33332 122232
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
... .++.+.++||| |.+.+.++...|+|.+.+|+....+
T Consensus 123 ~~~-~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a 161 (169)
T PF01729_consen 123 ELN-PRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTHSA 161 (169)
T ss_dssp HHT-TTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHHSB
T ss_pred hcC-CcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhcCC
Confidence 222 25889999999 6778999999999999999865443
No 293
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.68 E-value=3.5 Score=37.21 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=29.5
Q ss_pred chHHHHHHhhCCCCCcEEEc----cCCCC--hHHHHHHHHCCCcEEEecccc
Q 022271 121 SLLPMVVDLIGDRDIPIIAA----GGIVD--ARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaa----GGI~~--g~~v~aal~lGAdgV~~GT~f 166 (300)
..++.+++.. +.|||.. +|+++ ..-..+|+++||||+++=+.|
T Consensus 174 ~ai~~lk~~~---~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 174 MAVPIIQQKT---DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred HHHHHHHHHh---CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 4567777655 7999986 33322 134668889999999986554
No 294
>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=92.54 E-value=0.033 Score=47.22 Aligned_cols=41 Identities=20% Similarity=0.415 Sum_probs=35.4
Q ss_pred cccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCH
Q 022271 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAP 48 (300)
Q Consensus 5 ~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~ 48 (300)
+-.++.+|++.|+|. .++.+++|.++++.||+|++.. | +++
T Consensus 42 ~~i~l~iP~vSA~MD-tVtea~mAi~ma~~GGIGVih~-n-m~~ 82 (170)
T COG0516 42 PGIGVNIPQVSAAMD-TVTEARMAIAMARDGGIGVMHG-N-MLA 82 (170)
T ss_pred CCcccCchHHHHHHH-HHHHHHHhHHHHHcCCeEEEec-c-ccH
Confidence 336788999999999 7999999999999999999986 4 344
No 295
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.53 E-value=3.7 Score=37.83 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=80.0
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC--------------------------C--CCHHHHHHHHHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------------------------W--EAPDYLRDLIRKTR 59 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------------------------~--~~~~~l~~~i~~~r 59 (300)
.++.||+.|.=. .-.+.+....+..+| +|.+-... + ...+...+.+++.+
T Consensus 7 ~l~nPi~~Asg~-~~~~~e~~~~~~~~G-~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~~~~ 84 (294)
T cd04741 7 TISPPLMNAAGP-WCTTLEDLLELAASS-TGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIRTIS 84 (294)
T ss_pred eCCCCCEECCCC-CCCCHHHHHHHHHcC-CcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHHHHh
Confidence 367899987632 235667777777754 66552210 1 12344444455444
Q ss_pred hh---cCCcEEeeeecCCCc--HHHHHHHHHc---CCcEEEEcCCCCcHHHHHHHHHCCCeEeec--cChhchHHHHHHh
Q 022271 60 SL---TERPFGVGVVLAFPH--NENIKAILSE---KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ--DGLISLLPMVVDL 129 (300)
Q Consensus 60 ~~---~~~P~gvnl~~~~~~--~~~~~~~~e~---g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~--~~~~~ll~~v~~~ 129 (300)
+. .++|+.+++... +. .+.++.+.+. +++.|.++.+||.. .|..-+.. .-+..++..+++.
T Consensus 85 ~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~--------~~~~~~~~~~~~~~~i~~~v~~~ 155 (294)
T cd04741 85 DGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNV--------PGKPPPAYDFDATLEYLTAVKAA 155 (294)
T ss_pred hhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCC--------CCcccccCCHHHHHHHHHHHHHh
Confidence 32 468999999876 32 2334555554 68999999999741 11111111 1234455556555
Q ss_pred hCCCCCcEEEccCC-CChHHHH---HHH-HC--CCcEEEecccc
Q 022271 130 IGDRDIPIIAAGGI-VDARGYV---AAL-SL--GAQGICLGTRF 166 (300)
Q Consensus 130 ~~~~~iPViaaGGI-~~g~~v~---aal-~l--GAdgV~~GT~f 166 (300)
+ ++||++==.. .|..++. ..+ +. |+|+|.+-..+
T Consensus 156 ~---~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~ 196 (294)
T cd04741 156 Y---SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTL 196 (294)
T ss_pred c---CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccC
Confidence 5 6887753222 2333333 322 35 89999986544
No 296
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.26 E-value=1.8 Score=39.76 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhh
Q 022271 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLI 130 (300)
Q Consensus 51 l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~ 130 (300)
+.+.++++|+.. |+...+.......+.++.+++.|+++|-+.--. |++ +++ .++.+
T Consensus 180 i~~ai~~~r~~~--~~~~kIeVEv~tleea~ea~~~gaDiI~LDn~s-~e~-l~~--------------------av~~~ 235 (281)
T PRK06106 180 VREAIRRARAGV--GHLVKIEVEVDTLDQLEEALELGVDAVLLDNMT-PDT-LRE--------------------AVAIV 235 (281)
T ss_pred HHHHHHHHHHhC--CCCCcEEEEeCCHHHHHHHHHcCCCEEEeCCCC-HHH-HHH--------------------HHHHh
Confidence 556677777654 222233333345667777888899999887332 333 332 22222
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
+. ..|+-++||| |.+.+.++-..|.|.+.+|..+-
T Consensus 236 ~~-~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 236 AG-RAITEASGRI-TPETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred CC-CceEEEECCC-CHHHHHHHHhcCCCEEEeChhhc
Confidence 21 5789999999 67889999999999999998654
No 297
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.22 E-value=0.58 Score=45.15 Aligned_cols=60 Identities=25% Similarity=0.336 Sum_probs=46.7
Q ss_pred HHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 101 ELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
+.++.+-++|+.++.. .....++.++++... +++ +.+|+|.|.+++..++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p--~~~-vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYP--NLD-LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCC--CCc-EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 5677778899998874 224556777766542 454 67899999999999999999999887
No 298
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.21 E-value=2.9 Score=39.50 Aligned_cols=148 Identities=14% Similarity=0.191 Sum_probs=81.5
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC----------------------C-----CCHHHHHHHHHHHHhh
Q 022271 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD----------------------W-----EAPDYLRDLIRKTRSL 61 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~----------------------~-----~~~~~l~~~i~~~r~~ 61 (300)
++.||+.|. + -..+.+......++| +|.+-... + .+-..++..++++++.
T Consensus 58 l~nPi~~As-G-~~~~~~~~~~~~~~G-~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~ 134 (344)
T PRK05286 58 FPNPVGLAA-G-FDKNGEAIDALGALG-FGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKA 134 (344)
T ss_pred CCCCCEECC-C-CCCChHHHHHHHHcC-CCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHh
Confidence 577998754 3 234567777777766 44442110 0 0011133344444433
Q ss_pred -cCCcEEeeeecCC------CcHHHHHHHHHc--CCcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHHHHhhC
Q 022271 62 -TERPFGVGVVLAF------PHNENIKAILSE--KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMVVDLIG 131 (300)
Q Consensus 62 -~~~P~gvnl~~~~------~~~~~~~~~~e~--g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v~~~~~ 131 (300)
.+.|+++|+..+. ..++..+.+.+. +++.+.++++||..+ |...... .....++.+|++.++
T Consensus 135 ~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~--------g~~~~~~~~~~~eiv~aVr~~~~ 206 (344)
T PRK05286 135 YRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP--------GLRDLQYGEALDELLAALKEAQA 206 (344)
T ss_pred cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC--------CcccccCHHHHHHHHHHHHHHHh
Confidence 5689999997652 124444444444 489999999987321 1111111 124567777777762
Q ss_pred C--CCCcEEEccC--CC--ChHHHHHH-HHCCCcEEEeccccc
Q 022271 132 D--RDIPIIAAGG--IV--DARGYVAA-LSLGAQGICLGTRFV 167 (300)
Q Consensus 132 ~--~~iPViaaGG--I~--~g~~v~aa-l~lGAdgV~~GT~fl 167 (300)
. .++||++==. +. +-..++++ ...|||++.+-.++.
T Consensus 207 ~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~ 249 (344)
T PRK05286 207 ELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTL 249 (344)
T ss_pred ccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcc
Confidence 0 0278876433 32 13344444 458999999977664
No 299
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=91.69 E-value=0.26 Score=42.66 Aligned_cols=56 Identities=25% Similarity=0.454 Sum_probs=44.7
Q ss_pred HCCCeEeec--cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 108 SAGVKVVPQ--DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 108 ~~G~~v~~~--~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
..|+.++.. .| ..+++..+.+.. .-||+.+|||.-.+++.-+..+|.+||.+||+.
T Consensus 151 ~~~lIvLDi~aVGt~~G~~~E~l~~~~~~s---~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTal 213 (229)
T COG1411 151 DPGLIVLDIGAVGTKSGPDYELLTKVLELS---EHPVLLGGGVGGMEDLELLLGMGVSGVLVATAL 213 (229)
T ss_pred CCCeEEEEccccccccCCCHHHHHHHHHhc---cCceeecCCcCcHHHHHHHhcCCCceeeehhhh
Confidence 357666643 22 456777777664 679999999999999999999999999999975
No 300
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=91.56 E-value=1.7 Score=34.51 Aligned_cols=69 Identities=25% Similarity=0.356 Sum_probs=37.9
Q ss_pred CCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCC---CCCcEEEccCCCChHHHH
Q 022271 74 FPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDARGYV 150 (300)
Q Consensus 74 ~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~---~~iPViaaGGI~~g~~v~ 150 (300)
.|.++.++.+.+.++++|.+++-. .. ....++++.+.+++ .++++++.|.+ -.++..
T Consensus 37 vp~e~~~~~a~~~~~d~V~iS~~~--~~-----------------~~~~~~~~~~~L~~~~~~~i~i~~GG~~-~~~~~~ 96 (122)
T cd02071 37 QTPEEIVEAAIQEDVDVIGLSSLS--GG-----------------HMTLFPEVIELLRELGAGDILVVGGGII-PPEDYE 96 (122)
T ss_pred CCHHHHHHHHHHcCCCEEEEcccc--hh-----------------hHHHHHHHHHHHHhcCCCCCEEEEECCC-CHHHHH
Confidence 344566666666666666665422 11 12223333333321 14665555554 456788
Q ss_pred HHHHCCCcEEEe
Q 022271 151 AALSLGAQGICL 162 (300)
Q Consensus 151 aal~lGAdgV~~ 162 (300)
.+.++|.|++.=
T Consensus 97 ~~~~~G~d~~~~ 108 (122)
T cd02071 97 LLKEMGVAEIFG 108 (122)
T ss_pred HHHHCCCCEEEC
Confidence 889999987653
No 301
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.53 E-value=1.1 Score=41.30 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=64.8
Q ss_pred HHHHHHhhc-CCcEEeeeecC-CCc--HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHHHH
Q 022271 54 LIRKTRSLT-ERPFGVGVVLA-FPH--NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMVVD 128 (300)
Q Consensus 54 ~i~~~r~~~-~~P~gvnl~~~-~~~--~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v~~ 128 (300)
.++++++.. +.|+.++++.. .+. .+.++.+.+.+++.|.++++||.. .. .+..|..+..+ .-+..++..+++
T Consensus 89 ~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~-~~--~~~~G~~l~~~~~~~~~iv~~v~~ 165 (299)
T cd02940 89 EIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG-MP--ERGMGAAVGQDPELVEEICRWVRE 165 (299)
T ss_pred HHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CC--CCCCchhhccCHHHHHHHHHHHHH
Confidence 344444433 57888888876 332 344566666789999999999743 11 12334444332 123445555655
Q ss_pred hhCCCCCcEEEccCC--CChHHHHH-HHHCCCcEEEecccccc
Q 022271 129 LIGDRDIPIIAAGGI--VDARGYVA-ALSLGAQGICLGTRFVA 168 (300)
Q Consensus 129 ~~~~~~iPViaaGGI--~~g~~v~a-al~lGAdgV~~GT~fl~ 168 (300)
.+ ++||++=-.. .+-.+++. +...|||+|.+-..+..
T Consensus 166 ~~---~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 166 AV---KIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred hc---CCCeEEECCCCchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 54 6888775332 23334444 56689999998776654
No 302
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=91.51 E-value=0.52 Score=46.64 Aligned_cols=55 Identities=15% Similarity=0.360 Sum_probs=50.2
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~ 60 (300)
+++.+++++||+++||. ++|..+|+.+|+++|++|+|+. + +++++..++++++++
T Consensus 34 l~~~~~~~~Piv~a~m~-~vT~~ela~ava~~GglG~i~~-~-~~~e~~~~~I~~vk~ 88 (486)
T PRK05567 34 LTKNIRLNIPLLSAAMD-TVTEARMAIAMAREGGIGVIHK-N-MSIEEQAEEVRKVKR 88 (486)
T ss_pred hhhhcCcCcCEEeCCCC-CcCHHHHHHHHHhCCCCCEecC-C-CCHHHHHHHHHHhhh
Confidence 67899999999999999 7999999999999999999986 4 589999999998875
No 303
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=91.39 E-value=9.3 Score=35.17 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=41.3
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCCh-HHHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.+|.++.+.+ ++|++.=||-+.+ +++.++..+|..-|-++|-+-..
T Consensus 191 ~~~~L~~I~~~~---~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 239 (285)
T PRK07709 191 GFAEMEQVRDFT---GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIE 239 (285)
T ss_pred CHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHH
Confidence 356788888887 8999999999988 67889999999999999987554
No 304
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=91.26 E-value=9.4 Score=35.10 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=45.2
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.+.+|.++.+.+ ++|++.=||=+.+. ++.++..+|..-|-++|-+... .....|+.+
T Consensus 188 df~~L~~I~~~~---~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a----~~~~~~~~~ 245 (282)
T TIGR01858 188 DFDRLAEIREVV---DVPLVLHGASDVPDEDVRRTIELGICKVNVATELKIA----FSGAVKAYF 245 (282)
T ss_pred CHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHH----HHHHHHHHH
Confidence 467889998888 89999999888775 5778999999999999988765 234455554
No 305
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=91.26 E-value=0.58 Score=46.20 Aligned_cols=150 Identities=25% Similarity=0.302 Sum_probs=99.2
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh---cCCcEE-----------------
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL---TERPFG----------------- 67 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~---~~~P~g----------------- 67 (300)
+++.||+.+||. .++..+||.++++.||+|+|.. | +++++..+++++++.. ...|+-
T Consensus 41 ~l~~P~vsa~md-tvTe~~MAi~~A~~GGigvIh~-n-~~i~~qae~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~ 117 (475)
T TIGR01303 41 GTTIPLVVANMT-AVAGRRMAETVARRGGIVILPQ-D-LPIPAVKQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKR 117 (475)
T ss_pred ccccceeeccch-hhHHHHHHHHHHHCCCEEEEeC-C-CCHHHHHHHHhhcchhhccccCCeEECCCCCHHHHHHHHHhc
Confidence 468899999999 8999999999999999999997 4 5787777777666432 011110
Q ss_pred -------------eeeecC--------------------------CCcHHHHHHHHHcCCcEEE-Ec-CC----------
Q 022271 68 -------------VGVVLA--------------------------FPHNENIKAILSEKVAVLQ-VS-WG---------- 96 (300)
Q Consensus 68 -------------vnl~~~--------------------------~~~~~~~~~~~e~g~~~i~-~~-~G---------- 96 (300)
++++.. .+..+.++.+.+.+...+- +. -|
T Consensus 118 ~~~~~vVvD~gklvGIVT~rDL~~~~~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~D 197 (475)
T TIGR01303 118 AHGAAVVILEDRPVGLVTDSDLLGVDRFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTG 197 (475)
T ss_pred CCeEEEEEECCEEEEEEEHHHhhcCCCCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHH
Confidence 011100 0013455666666654321 11 00
Q ss_pred ------C--------------------CcHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCC
Q 022271 97 ------E--------------------YSEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGI 143 (300)
Q Consensus 97 ------~--------------------~~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI 143 (300)
. ...+.+..+.++|+.++.. .....++.++++.. .++|||+ |.+
T Consensus 198 Ll~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~--~~~~vi~-g~~ 274 (475)
T TIGR01303 198 ALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALD--LGVPIVA-GNV 274 (475)
T ss_pred HHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHC--CCCeEEE-ecc
Confidence 0 0135556666778777654 22456777777754 2799998 779
Q ss_pred CChHHHHHHHHCCCcEEEec
Q 022271 144 VDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 144 ~~g~~v~aal~lGAdgV~~G 163 (300)
.|.+++..++.+|||+|-+|
T Consensus 275 ~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 275 VSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred CCHHHHHHHHHhCCCEEEEC
Confidence 99999999999999998853
No 306
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=91.22 E-value=1.4 Score=40.83 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=62.0
Q ss_pred HHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHH------cCCcEEEEcCCC-CcHHHHHHHHHCCCeEeeccChhch
Q 022271 51 LRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILS------EKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQDGLISL 122 (300)
Q Consensus 51 l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e------~g~~~i~~~~G~-~~~~~v~~~~~~G~~v~~~~~~~~l 122 (300)
+.+.++++|+. -..++...+.....+.+.+..+++ .|+++|-+.-.. +|.+ + ......
T Consensus 186 i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~-~-------------~~~~e~ 251 (308)
T PLN02716 186 ITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN-G-------------DVDVSM 251 (308)
T ss_pred HHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccc-c-------------CCCHHH
Confidence 44556666662 223343444444445677777778 888888876331 1111 0 012222
Q ss_pred HHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 123 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 123 l~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
+.+.++.++. ..|+-++||| +.+.+.++-..|.|.+.+|..+-
T Consensus 252 l~~av~~~~~-~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 252 LKEAVELING-RFETEASGNV-TLDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred HHHHHHhhCC-CceEEEECCC-CHHHHHHHHHcCCCEEEeCcccc
Confidence 3333333322 5789999999 68889999999999999997554
No 307
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=91.15 E-value=0.61 Score=46.39 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=48.2
Q ss_pred HHHHHHHHCCCeEeeccC-------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec--cccccCc
Q 022271 101 ELVLEAHSAGVKVVPQDG-------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG--TRFVASE 170 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~~~-------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G--T~fl~t~ 170 (300)
+-++.+.++|+.++..+. .+..+.++++... ++ .|.+|+|.|.+++..++.+|||+|.+| +...++.
T Consensus 251 ~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p--~~-~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t 326 (505)
T PLN02274 251 ERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYP--EL-DVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTT 326 (505)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCC--CC-cEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccC
Confidence 556666778888876421 3467777777541 33 566899999999999999999999876 5544443
No 308
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=91.14 E-value=3.6 Score=37.32 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=30.3
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHH------HHHHHHCCCcEEEe
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARG------YVAALSLGAQGICL 162 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~------v~aal~lGAdgV~~ 162 (300)
++.+|-+++.. ..|||+.=-=.+|+. +.++++.||||+++
T Consensus 203 i~aV~~~kq~T---HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmi 248 (286)
T COG2876 203 ISAVPILKQET---HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMI 248 (286)
T ss_pred hHHHHHHHhhc---CCCEEECCCCcccchhhHHHHHHHHHhccCCeeEE
Confidence 45677777775 799999765555554 45788999999997
No 309
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=91.12 E-value=9.5 Score=35.19 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=47.1
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCCh-HHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
.+.++.++.+.+ ++|++.=||=+.+ +++.++...|..-|-++|-+... .....|+.+.
T Consensus 194 d~~~L~~I~~~v---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a----~~~~~~~~~~ 252 (288)
T TIGR00167 194 DFERLEEIQKYV---NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIA----FAAAVRNYYA 252 (288)
T ss_pred CHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHH----HHHHHHHHHH
Confidence 456888898888 8999999999998 57889999999999999988665 3445555553
No 310
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=91.11 E-value=12 Score=34.39 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=44.7
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.+.++.++.+.+ ++|++.=||=+.+. ++.++..+|..-|-++|-+..+ .....|+.+
T Consensus 190 dfd~l~~I~~~~---~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a----~~~~~~~~~ 247 (286)
T PRK12738 190 DFQRLAEIREVV---DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIA----FAGAVKAWF 247 (286)
T ss_pred CHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHH----HHHHHHHHH
Confidence 467889998887 89999999887764 5778999999999999988665 234445544
No 311
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.05 E-value=10 Score=33.20 Aligned_cols=137 Identities=23% Similarity=0.254 Sum_probs=78.3
Q ss_pred HhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcCCCC-cHHHHHHHHHC
Q 022271 32 ANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA 109 (300)
Q Consensus 32 s~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~G~~-~~~~v~~~~~~ 109 (300)
.+.+-+.++-. .++++..+..+.+.+..=+ .+=+....+. .+.++.+.+..++ +.+..|.. ..+-++.+.++
T Consensus 6 ~~~~liaVlr~---~~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~~~~~-~~vGAGTVl~~~~a~~a~~a 79 (204)
T TIGR01182 6 REAKIVPVIRI---DDVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRKEVPD-ALIGAGTVLNPEQLRQAVDA 79 (204)
T ss_pred hhCCEEEEEec---CCHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHc
Confidence 44555555543 3666655555555442111 1222223232 3445555554445 33443432 34556667778
Q ss_pred CCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 110 GVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 110 G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
|...+...+ +-+++.+..++.++|++. |+.|+.++..|+.+||+.|=+ +.-++..-+.|-+.|..
T Consensus 80 GA~FivsP~---~~~~v~~~~~~~~i~~iP--G~~TptEi~~A~~~Ga~~vKl-----FPA~~~GG~~yikal~~ 144 (204)
T TIGR01182 80 GAQFIVSPG---LTPELAKHAQDHGIPIIP--GVATPSEIMLALELGITALKL-----FPAEVSGGVKMLKALAG 144 (204)
T ss_pred CCCEEECCC---CCHHHHHHHHHcCCcEEC--CCCCHHHHHHHHHCCCCEEEE-----CCchhcCCHHHHHHHhc
Confidence 877775433 345666555444788888 999999999999999998876 33232222556555554
No 312
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.03 E-value=11 Score=34.80 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=40.3
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHH-HHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARG-YVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~-v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.++.++.+.+ ++|++.=||=+.+.+ +.+++.+|..-|-++|-+...
T Consensus 190 d~~~L~~I~~~~---~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~a 238 (284)
T PRK12737 190 DFERLAEIREKV---SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKIA 238 (284)
T ss_pred CHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHH
Confidence 456799998887 899999999887765 778999999999999987654
No 313
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=91.01 E-value=5.2 Score=37.65 Aligned_cols=148 Identities=16% Similarity=0.205 Sum_probs=81.6
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCceEEecCC---------C-------------C-----CCHHHHHHHHHHHHh-
Q 022271 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP---------D-------------W-----EAPDYLRDLIRKTRS- 60 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~---------~-------------~-----~~~~~l~~~i~~~r~- 60 (300)
++.||+.|. + ...+.+.......+ |+|++-.+ + + .+...++..++++++
T Consensus 55 l~NPi~lAs-G-~~~~~~~~~~~~~~-G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~ 131 (335)
T TIGR01036 55 FPNPLGLAA-G-FDKDGEAIDALGAM-GFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRA 131 (335)
T ss_pred CCCCcEeCC-c-cCCCHHHHHHHHhc-CCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhc
Confidence 577998743 2 23456677777777 46665221 1 0 011224444555543
Q ss_pred hcCCcEEeeeecCC------CcHHHHHHHHHcC--CcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHHHHhhC
Q 022271 61 LTERPFGVGVVLAF------PHNENIKAILSEK--VAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMVVDLIG 131 (300)
Q Consensus 61 ~~~~P~gvnl~~~~------~~~~~~~~~~e~g--~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v~~~~~ 131 (300)
..+.|++||+..+. ..+++.+.+.+.+ ++.+.++..||... |...... ..+..++..|++.++
T Consensus 132 ~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~--------~~~~~~~~~~~~~i~~~V~~~~~ 203 (335)
T TIGR01036 132 RYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP--------GLRDLQYKAELRDLLTAVKQEQD 203 (335)
T ss_pred cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC--------CcccccCHHHHHHHHHHHHHHHH
Confidence 24579999986552 1245555555444 89999988776311 2111111 124455666666552
Q ss_pred C----CCCcEEEccC--CC--ChHHHHH-HHHCCCcEEEeccccc
Q 022271 132 D----RDIPIIAAGG--IV--DARGYVA-ALSLGAQGICLGTRFV 167 (300)
Q Consensus 132 ~----~~iPViaaGG--I~--~g~~v~a-al~lGAdgV~~GT~fl 167 (300)
. .++||++==. +. +-.++++ +...|||||.+-..+.
T Consensus 204 ~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~ 248 (335)
T TIGR01036 204 GLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTV 248 (335)
T ss_pred hhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCC
Confidence 0 1288876433 33 3445554 5568999999987764
No 314
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.71 E-value=3.5 Score=37.75 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEE
Q 022271 49 DYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~ 93 (300)
++=-+.++++|+.++.|+--.++ +.++++.+.+. +|++.+
T Consensus 73 eeGL~iL~~vk~~~glpvvTeV~----~~~q~~~vae~-~DilQI 112 (290)
T PLN03033 73 AEGLKILEKVKVAYDLPIVTDVH----ESSQCEAVGKV-ADIIQI 112 (290)
T ss_pred HHHHHHHHHHHHHHCCceEEeeC----CHHHHHHHHhh-CcEEee
Confidence 34446788888888777754444 45566666665 566655
No 315
>PRK08185 hypothetical protein; Provisional
Probab=90.47 E-value=13 Score=34.12 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=44.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCCh-HHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.+.++.++++.+ ++|+++=||+..+ +++.++..+|..-|-++|-+..+ .....|+.+
T Consensus 186 ~~e~l~~I~~~~---~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a----~~~~~~~~~ 243 (283)
T PRK08185 186 QMDLLKEINERV---DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYA----FFKKVREIL 243 (283)
T ss_pred CHHHHHHHHHhh---CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHH----HHHHHHHHH
Confidence 466788888877 8999999999766 55778999999999999987665 234455544
No 316
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=90.47 E-value=8.4 Score=36.71 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=34.1
Q ss_pred hchHHHHHHhhCCCCCcEEE-ccCCCC---h--HHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 120 ISLLPMVVDLIGDRDIPIIA-AGGIVD---A--RGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPVia-aGGI~~---g--~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
+..++.+++.. ++||+. ..-... - .-..+|.++||||+++=+.| .++...+
T Consensus 276 l~~i~~lk~~~---~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~--dp~~a~~ 332 (360)
T PRK12595 276 ISAVPILKQET---HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP--DPAVALS 332 (360)
T ss_pred HHHHHHHHHHh---CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC--CCCCCCC
Confidence 45677777765 799999 433322 1 13456789999999998888 5444333
No 317
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=90.43 E-value=0.97 Score=42.38 Aligned_cols=61 Identities=28% Similarity=0.474 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCeEeecc---C----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 100 EELVLEAHSAGVKVVPQD---G----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~~---~----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+.++.+-++|+.++... + ...++.++++... ++||++ |.+.+.+++..++.+|||+|.+|
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p--~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYP--NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCC--CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 355666678898876531 1 2445666666541 488877 99999999999999999999984
No 318
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=90.40 E-value=13 Score=34.10 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=41.7
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.+|.++.+.+ ++|++.=||=+.+. ++.++...|..-|-++|.+...
T Consensus 184 ~~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 232 (276)
T cd00947 184 DFDRLKEIAERV---NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLA 232 (276)
T ss_pred CHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHH
Confidence 356888898888 89999999999984 5899999999999999988655
No 319
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=90.30 E-value=7.9 Score=33.09 Aligned_cols=109 Identities=26% Similarity=0.308 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCC-cHHHHHHHHHcCCcEEEEcCCCCc-HHHHHHHHHCCCeEeeccChhchH
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP-HNENIKAILSEKVAVLQVSWGEYS-EELVLEAHSAGVKVVPQDGLISLL 123 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~-~~~~~~~~~e~g~~~i~~~~G~~~-~~~v~~~~~~G~~v~~~~~~~~ll 123 (300)
.+++.+.+.++.+.+..=+ .+-+....+ ..+.++.+.+.-+++. +..|... .+-++.+.+.|...++..+..
T Consensus 13 ~~~~~~~~~~~~l~~~G~~--~vev~~~~~~~~~~i~~l~~~~~~~~-iGag~v~~~~~~~~a~~~Ga~~i~~p~~~--- 86 (190)
T cd00452 13 DDAEDALALAEALIEGGIR--AIEITLRTPGALEAIRALRKEFPEAL-IGAGTVLTPEQADAAIAAGAQFIVSPGLD--- 86 (190)
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCCEEEcCCCC---
Confidence 3566665555555442111 122222222 2345555555444332 2223322 556677777777766643322
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
+++.++.+..++|++. |+.|.+++..++.+|||.+.+
T Consensus 87 ~~~~~~~~~~~~~~i~--gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 87 PEVVKAANRAGIPLLP--GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred HHHHHHHHHcCCcEEC--CcCCHHHHHHHHHCCCCEEEE
Confidence 2333332222678776 888999999999999999997
No 320
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.23 E-value=2.9 Score=32.73 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=42.1
Q ss_pred CCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHH
Q 022271 73 AFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 152 (300)
Q Consensus 73 ~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aa 152 (300)
..|.++.++.+.+.++++|.+++-... .... ...++.++++... .+++|+.+|...+. .-..+
T Consensus 36 ~~~~~~l~~~~~~~~pdvV~iS~~~~~--~~~~-------------~~~~i~~l~~~~~-~~~~i~vGG~~~~~-~~~~~ 98 (119)
T cd02067 36 DVPPEEIVEAAKEEDADAIGLSGLLTT--HMTL-------------MKEVIEELKEAGL-DDIPVLVGGAIVTR-DFKFL 98 (119)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccc--cHHH-------------HHHHHHHHHHcCC-CCCeEEEECCCCCh-hHHHH
Confidence 334566677777777777777643211 1111 1233444444321 16888888887775 33567
Q ss_pred HHCCCcEEEe
Q 022271 153 LSLGAQGICL 162 (300)
Q Consensus 153 l~lGAdgV~~ 162 (300)
..+|+|++.-
T Consensus 99 ~~~G~D~~~~ 108 (119)
T cd02067 99 KEIGVDAYFG 108 (119)
T ss_pred HHcCCeEEEC
Confidence 8899998764
No 321
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=90.18 E-value=14 Score=34.10 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=45.3
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.+.+|.++.+.+ ++|++.=||=+.+. ++.++..+|..-|-++|-+... .....|+.+
T Consensus 190 d~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a----~~~~~~~~~ 247 (284)
T PRK09195 190 DFDRLENIRQWV---NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIA----FSQALKNYL 247 (284)
T ss_pred CHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHH----HHHHHHHHH
Confidence 467888998887 89999999887764 5778999999999999988755 345555555
No 322
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=90.14 E-value=14 Score=34.15 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=41.6
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCCh-HHHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.++.++.+.+ ++|++.=||=+.+ +++.+++.+|..-|-++|-+-..
T Consensus 191 d~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~a 239 (286)
T PRK08610 191 GFKEMEEIGLST---GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIA 239 (286)
T ss_pred CHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHHH
Confidence 367888898887 8999999999988 67888999999999999987655
No 323
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.09 E-value=4.9 Score=37.07 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 50 YLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 50 ~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
.+.+.++++|+.. .+++-|= ....+.+..+++.|+++|-+.- ..|++ +++. ++.+..
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVE----v~tl~ea~eal~~gaDiI~LDn-m~~e~-vk~a----------------v~~~~~ 242 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVE----VDSLEQLDEVLAEGAELVLLDN-FPVWQ-TQEA----------------VQRRDA 242 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEE----cCCHHHHHHHHHcCCCEEEeCC-CCHHH-HHHH----------------HHHHhc
Confidence 3456677777642 3444332 2345677777889999998873 22333 3321 111111
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
. . .++.+.++||| |.+.+.++-..|+|.+.+|+.+--
T Consensus 243 ~-~-~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~s 279 (289)
T PRK07896 243 R-A-PTVLLESSGGL-TLDTAAAYAETGVDYLAVGALTHS 279 (289)
T ss_pred c-C-CCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhhcC
Confidence 1 1 26889999999 788999999999999999986653
No 324
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=90.07 E-value=2.3 Score=41.16 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=63.6
Q ss_pred HHHHHhhc-CCcEEeeeecC-CCc--HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHHHHh
Q 022271 55 IRKTRSLT-ERPFGVGVVLA-FPH--NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMVVDL 129 (300)
Q Consensus 55 i~~~r~~~-~~P~gvnl~~~-~~~--~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v~~~ 129 (300)
++++++.. +.|+.+++... .+. .+.++.+.+.+++.|.++.++|. .+. .+..|..+..+ ..+..++..+++.
T Consensus 90 ~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~-~~~--~~~~g~~~~~~~~~~~~i~~~v~~~ 166 (420)
T PRK08318 90 IRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH-GMS--ERGMGSAVGQVPELVEMYTRWVKRG 166 (420)
T ss_pred HHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-Ccc--ccCCcccccCCHHHHHHHHHHHHhc
Confidence 33443333 57888888876 332 45666777789999999999975 211 12344444432 1234455555555
Q ss_pred hCCCCCcEEE--ccCCCChHHHHH-HHHCCCcEEEecccc
Q 022271 130 IGDRDIPIIA--AGGIVDARGYVA-ALSLGAQGICLGTRF 166 (300)
Q Consensus 130 ~~~~~iPVia--aGGI~~g~~v~a-al~lGAdgV~~GT~f 166 (300)
+ ++||++ .-.+.+-..++. +...||||+.+=..+
T Consensus 167 ~---~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~ 203 (420)
T PRK08318 167 S---RLPVIVKLTPNITDIREPARAAKRGGADAVSLINTI 203 (420)
T ss_pred c---CCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEeccc
Confidence 4 678775 334455556665 456899999964444
No 325
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=90.03 E-value=12 Score=34.82 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=98.7
Q ss_pred ccccC--CccceecCCCCC----CCCcH--HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGP----DISGP--ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~----g~s~~--~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+..|| +..||..||-++ .. +. .-|.|.+.+|..-+++.-...++|++ .+. ....-...+|.....
T Consensus 60 TtvlG~~i~~Pi~iapTa~qkma~p-dGE~~taraa~~~~~~~i~Ss~at~S~EdI----~~a--ap~~~rwfQLYvykd 132 (363)
T KOG0538|consen 60 TTVLGQKISAPIMIAPTAMQKMAHP-DGELATARAAQAAGTIMILSSWATCSVEDI----ASA--APPGIRWFQLYVYKD 132 (363)
T ss_pred ceeccccccceeEEcchHHHhccCC-cccHHHHHHHHhcCCcEEEechhcCCHHHH----Hhh--CCCCcEEEEEEecCc
Confidence 34566 677999998531 12 22 44566677787666654222355433 222 112223345554432
Q ss_pred ---cHHHHHHHHHcCCcEEEEcCCCC-----cHHHHHHHHH------C------CCeEee------------c-cC--hh
Q 022271 76 ---HNENIKAILSEKVAVLQVSWGEY-----SEELVLEAHS------A------GVKVVP------------Q-DG--LI 120 (300)
Q Consensus 76 ---~~~~~~~~~e~g~~~i~~~~G~~-----~~~~v~~~~~------~------G~~v~~------------~-~~--~~ 120 (300)
.++.++.+.+.|.+++.+....| ..++-..+.. . ...+.. + .+ .+
T Consensus 133 r~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W 212 (363)
T KOG0538|consen 133 RDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSW 212 (363)
T ss_pred hHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCCh
Confidence 25678888899999887654332 1111111100 0 000000 0 01 12
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe---ccccccCcccCCCHHHHHHHHcCCCcceEEEec
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL---GTRFVASEESYAHPEYKRKLVEMDKTEYTDVFG 195 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~---GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~ 195 (300)
.=++-++... +.||++= ||-+++|+..|...|++|+.+ |-|=+ .+.+++-..-..++++-+.-+.+.++
T Consensus 213 ~Di~wLr~~T---~LPIvvK-Gilt~eDA~~Ave~G~~GIIVSNHGgRQl--D~vpAtI~~L~Evv~aV~~ri~V~lD 284 (363)
T KOG0538|consen 213 KDIKWLRSIT---KLPIVVK-GVLTGEDARKAVEAGVAGIIVSNHGGRQL--DYVPATIEALPEVVKAVEGRIPVFLD 284 (363)
T ss_pred hhhHHHHhcC---cCCeEEE-eecccHHHHHHHHhCCceEEEeCCCcccc--CcccchHHHHHHHHHHhcCceEEEEe
Confidence 2234444443 7898765 689999999999999999999 44544 34566766777777764443444443
No 326
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=89.65 E-value=8.9 Score=34.75 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=32.7
Q ss_pred hchHHHHHHhhCCCCCcEEE-ccCCCC-----hHHHHHHHHCCCcEEEeccccccC
Q 022271 120 ISLLPMVVDLIGDRDIPIIA-AGGIVD-----ARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPVia-aGGI~~-----g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+..++.+++.. ++||+. ++-... ..-..+|.++||+|+++=+.|-..
T Consensus 183 l~~i~~lk~~~---~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d 235 (260)
T TIGR01361 183 LSAVPVLKKET---HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPE 235 (260)
T ss_pred HHHHHHHHHhh---CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 45667777665 799999 454443 344558889999999887665443
No 327
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.56 E-value=1.8 Score=38.36 Aligned_cols=65 Identities=23% Similarity=0.172 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCC-CCCcEEEccCCCChHHHHHHHHCC
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~-~~iPViaaGGI~~g~~v~aal~lG 156 (300)
+.++.+.+.|++++.+++-.| ..+..+.++++..+. .+=-++.+|-|.|.+++.+++.+|
T Consensus 31 ~~~~al~~gGi~~iEiT~~tp-------------------~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aG 91 (222)
T PRK07114 31 KVIKACYDGGARVFEFTNRGD-------------------FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLG 91 (222)
T ss_pred HHHHHHHHCCCCEEEEeCCCC-------------------cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcC
Confidence 345666666777776666443 122333344332211 011379999999999999999999
Q ss_pred CcEEE
Q 022271 157 AQGIC 161 (300)
Q Consensus 157 AdgV~ 161 (300)
|+.++
T Consensus 92 A~FiV 96 (222)
T PRK07114 92 ANFIV 96 (222)
T ss_pred CCEEE
Confidence 98655
No 328
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=89.29 E-value=1.4 Score=38.26 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.+.++.+.+.|++++.+++-.| ..+..+.++++... + -++.+|.|.|.+++..++.+|
T Consensus 23 ~~~~~al~~gGi~~iEiT~~t~-------------------~a~~~I~~l~~~~p--~-~~vGAGTV~~~e~a~~a~~aG 80 (196)
T PF01081_consen 23 VPIAEALIEGGIRAIEITLRTP-------------------NALEAIEALRKEFP--D-LLVGAGTVLTAEQAEAAIAAG 80 (196)
T ss_dssp HHHHHHHHHTT--EEEEETTST-------------------THHHHHHHHHHHHT--T-SEEEEES--SHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEecCCc-------------------cHHHHHHHHHHHCC--C-CeeEEEeccCHHHHHHHHHcC
Confidence 3455666666666666665442 23345555666652 3 479999999999999999999
Q ss_pred CcEEE
Q 022271 157 AQGIC 161 (300)
Q Consensus 157 AdgV~ 161 (300)
|+.++
T Consensus 81 A~Fiv 85 (196)
T PF01081_consen 81 AQFIV 85 (196)
T ss_dssp -SEEE
T ss_pred CCEEE
Confidence 98665
No 329
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=89.27 E-value=4.3 Score=37.57 Aligned_cols=124 Identities=19% Similarity=0.193 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEE-ccCCCChHHHH---HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIA-AGGIVDARGYV---AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPVia-aGGI~~g~~v~---aa 152 (300)
.+.++.+++.|++.|... |.- .+..-.-+ .--..++..+++.+++ ++|||+ .|+..+.+.+. .+
T Consensus 28 ~~lv~~li~~Gv~gi~~~-Gtt-GE~~~Ls~---------eEr~~v~~~~v~~~~g-rvpviaG~g~~~t~eai~lak~a 95 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVL-GTT-GESPTLTL---------EERKEVLEAVVEAVGG-RVPVIAGVGSNSTAEAIELAKHA 95 (299)
T ss_pred HHHHHHHHHcCCCEEEEC-CCC-ccchhcCH---------HHHHHHHHHHHHHHCC-CCcEEEecCCCcHHHHHHHHHHH
Confidence 456778888888888765 321 11000000 0012455667777653 689888 55555555544 44
Q ss_pred HHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+||||+++=++|..-.--..--.|=++|.++.+.. ..++.. |++.+.-+..+++.++.
T Consensus 96 ~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lP-vilYN~---P~~tg~~l~~e~i~~la 155 (299)
T COG0329 96 EKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLP-VILYNI---PSRTGVDLSPETIARLA 155 (299)
T ss_pred HhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCC-EEEEeC---ccccCCCCCHHHHHHHh
Confidence 5699999999999998643222333444455554554 235531 44444445545554443
No 330
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.17 E-value=1.5 Score=38.31 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCC
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
+.++.+.+.|+++|.+.+..| ..+..+.++++.. +--+|.+|-|.|.+++..++.+||
T Consensus 20 ~ia~al~~gGi~~iEit~~tp-------------------~a~~~I~~l~~~~---~~~~vGAGTVl~~e~a~~ai~aGA 77 (201)
T PRK06015 20 PLARALAAGGLPAIEITLRTP-------------------AALDAIRAVAAEV---EEAIVGAGTILNAKQFEDAAKAGS 77 (201)
T ss_pred HHHHHHHHCCCCEEEEeCCCc-------------------cHHHHHHHHHHHC---CCCEEeeEeCcCHHHHHHHHHcCC
Confidence 345566666666666665442 2344455555554 225799999999999999999998
Q ss_pred cEEE
Q 022271 158 QGIC 161 (300)
Q Consensus 158 dgV~ 161 (300)
+.++
T Consensus 78 ~Fiv 81 (201)
T PRK06015 78 RFIV 81 (201)
T ss_pred CEEE
Confidence 8654
No 331
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=89.14 E-value=7.3 Score=35.31 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEE
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~ 93 (300)
+=-+.++++|+.++.|+---++ +.++++.+.+. +|++.+
T Consensus 68 eGL~~L~~vk~~~GlpvvTeV~----~~~~~~~v~~~-~DilQI 106 (264)
T PRK05198 68 EGLKILQEVKETFGVPVLTDVH----EPEQAAPVAEV-VDVLQI 106 (264)
T ss_pred HHHHHHHHHHHHHCCceEEEeC----CHHHHHHHHhh-CcEEEE
Confidence 3346788888887777755444 45566666665 666655
No 332
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=89.09 E-value=8.9 Score=33.61 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=33.2
Q ss_pred hchHHHHHHhhCCCC-CcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 120 ISLLPMVVDLIGDRD-IPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~-iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
+.++.++.+.++..+ ..=|.+.|+.+..++..++.+|||.|-+.-
T Consensus 141 ~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~ 186 (211)
T cd00956 141 MELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPP 186 (211)
T ss_pred HHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCH
Confidence 456666666553223 335667789999999999999999998853
No 333
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=89.05 E-value=19 Score=33.60 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=44.0
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChH----------------------HHHHHHHCCCcEEEeccccccCcccCCCHH
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDAR----------------------GYVAALSLGAQGICLGTRFVASEESYAHPE 177 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~----------------------~v~aal~lGAdgV~~GT~fl~t~Es~~~~~ 177 (300)
+.+|.++.+.+ ++|++.=||=+.+. ++.++..+|..-|-++|-+..+ ....
T Consensus 193 f~~L~~I~~~~---~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a----~~~~ 265 (307)
T PRK05835 193 FERLQEVKRLT---NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIA----FIAE 265 (307)
T ss_pred HHHHHHHHHHh---CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHHH----HHHH
Confidence 56788888887 89999999999887 7888899999999998877655 2344
Q ss_pred HHHHH
Q 022271 178 YKRKL 182 (300)
Q Consensus 178 ~k~~i 182 (300)
.|+.+
T Consensus 266 ~~~~~ 270 (307)
T PRK05835 266 VRKVA 270 (307)
T ss_pred HHHHH
Confidence 55544
No 334
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=89.01 E-value=8.1 Score=34.93 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~ 94 (300)
+=-+.++++|+.++.|+---++ +.++++.+.+. +|++.+.
T Consensus 60 eGL~iL~~vk~~~glpvvTeV~----~~~~~~~vae~-vDilQIg 99 (258)
T TIGR01362 60 EGLKILQKVKEEFGVPILTDVH----ESSQCEPVAEV-VDIIQIP 99 (258)
T ss_pred HHHHHHHHHHHHhCCceEEEeC----CHHHHHHHHhh-CcEEEeC
Confidence 3446788888888777755444 45666666666 7777653
No 335
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=88.64 E-value=3 Score=36.16 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=52.6
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC--C--CCcEEEccCCCChHHHHHH
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD--R--DIPIIAAGGIVDARGYVAA 152 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~--~--~iPViaaGGI~~g~~v~aa 152 (300)
..+...|.+++.+....|++++++.+++.+..++.. ...+..+.++.+.++. . +++|++.|...+.+ -+
T Consensus 104 ~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~~---~~ 180 (201)
T cd02070 104 TMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQE---FA 180 (201)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCHH---HH
Confidence 344568999988877788889999998888777653 1223333444443321 2 68999999988864 34
Q ss_pred HHCCCcEEE
Q 022271 153 LSLGAQGIC 161 (300)
Q Consensus 153 l~lGAdgV~ 161 (300)
-.+|||+..
T Consensus 181 ~~~GaD~~~ 189 (201)
T cd02070 181 DEIGADGYA 189 (201)
T ss_pred HHcCCcEEE
Confidence 456999764
No 336
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.60 E-value=6.5 Score=36.36 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhh
Q 022271 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLI 130 (300)
Q Consensus 51 l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~ 130 (300)
+.+.++++|+... + ..+-....+.++++.+++.|+++|-+.-. .|++ ++++ ++.+
T Consensus 192 i~~av~~~r~~~~-~--~kIeVEvetleea~eA~~aGaDiImLDnm-spe~-l~~a--------------------v~~~ 246 (294)
T PRK06978 192 VGAALDAAFALNA-G--VPVQIEVETLAQLETALAHGAQSVLLDNF-TLDM-MREA--------------------VRVT 246 (294)
T ss_pred HHHHHHHHHHhCC-C--CcEEEEcCCHHHHHHHHHcCCCEEEECCC-CHHH-HHHH--------------------HHhh
Confidence 4455666665422 1 12233334567788888899999988733 3333 3321 1112
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+. ++.+-++||| +.+-+.++-..|.|.+.+|..+--
T Consensus 247 ~~-~~~lEaSGGI-t~~ni~~yA~tGVD~IS~galths 282 (294)
T PRK06978 247 AG-RAVLEVSGGV-NFDTVRAFAETGVDRISIGALTKD 282 (294)
T ss_pred cC-CeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccC
Confidence 11 5789999999 688899999999999999975543
No 337
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=88.31 E-value=6.3 Score=36.26 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 50 YLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 50 ~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
.+.+.++++|+.. .+++-|-+ ...++++.+++.|+++|.+.- ..|+ .++++. .+ +..
T Consensus 175 ~i~~av~~~r~~~~~~kIeVEv----~tleqa~ea~~agaDiI~LDn-~~~e-~l~~av-------------~~---~~~ 232 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVVEA----DTPKEAIAALRAQPDVLQLDK-FSPQ-QATEIA-------------QI---APS 232 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC----CCHHHHHHHHHcCCCEEEECC-CCHH-HHHHHH-------------HH---hhc
Confidence 5667788887753 23343333 467888888999999999963 2233 343321 11 111
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
. ..++.+-++||| +.+.+.++-..|+|.+.+|..+
T Consensus 233 ~--~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal~ 267 (284)
T PRK06096 233 L--APHCTLSLAGGI-NLNTLKNYADCGIRLFITSAPY 267 (284)
T ss_pred c--CCCeEEEEECCC-CHHHHHHHHhcCCCEEEECccc
Confidence 1 126789999999 7889999999999999998753
No 338
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=88.26 E-value=20 Score=32.67 Aligned_cols=141 Identities=13% Similarity=0.091 Sum_probs=73.6
Q ss_pred HHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhcC--CcEEeeeecCCC--cHHHHHHHHHcCCcEEEEcC-
Q 022271 26 ELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFP--HNENIKAILSEKVAVLQVSW- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~~--~P~gvnl~~~~~--~~~~~~~~~e~g~~~i~~~~- 95 (300)
+++.-....|.=|++.+|. .++.++-.+.++.+.+..+ .|+-+++..... ..+..+.+.+.|++.|.+..
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP 102 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTP 102 (285)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5555556678767664321 3677777777777766532 455555433211 12345555666776665421
Q ss_pred --CCC-cHHHHHHHH----HCCCeEeec------------------------------cChhchHHHHHHhhCCCCCcEE
Q 022271 96 --GEY-SEELVLEAH----SAGVKVVPQ------------------------------DGLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 96 --G~~-~~~~v~~~~----~~G~~v~~~------------------------------~~~~~ll~~v~~~~~~~~iPVi 138 (300)
..+ ++++++..+ ..+..++.. .+.+..+.++.+... .+..|+
T Consensus 103 ~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s~~d~~~~~~l~~~~~-~~~~v~ 181 (285)
T TIGR00674 103 YYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEATGNLERISEIKAIAP-DDFVVL 181 (285)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHhcC-CCeEEE
Confidence 111 122222211 123333211 123444555554432 134444
Q ss_pred EccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.+ +...+...+.+|++|.+.|+..+..++
T Consensus 182 ~G----~d~~~~~~~~~G~~G~i~~~~~~~P~~ 210 (285)
T TIGR00674 182 SG----DDALTLPMMALGGKGVISVTANVAPKL 210 (285)
T ss_pred EC----chHHHHHHHHcCCCEEEehHHHhhHHH
Confidence 43 224567788999999999988876654
No 339
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=88.16 E-value=12 Score=35.33 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=27.4
Q ss_pred CCcEEEccCCCChH-----HHHHH---HHCCCcEEEeccccccC
Q 022271 134 DIPIIAAGGIVDAR-----GYVAA---LSLGAQGICLGTRFVAS 169 (300)
Q Consensus 134 ~iPViaaGGI~~g~-----~v~aa---l~lGAdgV~~GT~fl~t 169 (300)
.+||+.+||=.... .+..+ +..||.|+.+|+-..-.
T Consensus 281 ~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~ 324 (348)
T PRK09250 281 RRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQR 324 (348)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcC
Confidence 58999999988542 25567 88999999999654433
No 340
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.06 E-value=4.5 Score=37.26 Aligned_cols=123 Identities=13% Similarity=0.129 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHH----HHH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VAA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v----~aa 152 (300)
..+++.+++.|++.+.+. |... +... +...--..++..+++.+++ ++||++.=|-.+-++. ..+
T Consensus 24 ~~lv~~~~~~Gv~gi~v~-GstG-E~~~---------Ls~~Er~~l~~~~~~~~~g-~~pvi~gv~~~~t~~ai~~a~~A 91 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVG-GTSG-EPGS---------LTLEERKQAIENAIDQIAG-RIPFAPGTGALNHDETLELTKFA 91 (294)
T ss_pred HHHHHHHHHcCCCEEEEC-ccCc-cccc---------CCHHHHHHHHHHHHHHhCC-CCcEEEECCcchHHHHHHHHHHH
Confidence 456778888888888765 3211 1000 0000023455566666643 6999977666566554 355
Q ss_pred HHCCCcEEEeccccccCcccCCCHHHHHHHHcCC-CcceEEEecccCCCCCCCceecChhhHhh
Q 022271 153 LSLGAQGICLGTRFVASEESYAHPEYKRKLVEMD-KTEYTDVFGRARWPGAPHRVLQTPFFSNW 215 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~-~t~~t~~~~~~~~~g~~~R~l~n~~~~~~ 215 (300)
.++|||+|++.+++........--.|=+.|.++. +.. ..++. .|+..+..+....+.++
T Consensus 92 ~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lp-v~iYn---~P~~tg~~l~~~~l~~L 151 (294)
T TIGR02313 92 EEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFP-IIIYN---IPGRAAQEIAPKTMARL 151 (294)
T ss_pred HHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCC-EEEEe---CchhcCcCCCHHHHHHH
Confidence 6699999999999887643222233444455554 433 23443 24444444555555554
No 341
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=87.66 E-value=5.9 Score=36.91 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=78.7
Q ss_pred cccC--CccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC--------CC-------------------CHHHHHHHH
Q 022271 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------WE-------------------APDYLRDLI 55 (300)
Q Consensus 5 ~~lg--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------~~-------------------~~~~l~~~i 55 (300)
+++| .+.|++.|.=. -..+.+...+..+-| +|++-.+. .. +-..++..+
T Consensus 5 ~~~Gl~f~NPl~lAaG~-~~~~~~~~~~~~~~g-~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~ 82 (310)
T COG0167 5 EILGLKFPNPLGLAAGF-DGKNGEELDALAALG-FGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAFL 82 (310)
T ss_pred eecceecCCCCeEcccC-CccCHHHHHHHHhcC-CceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHHH
Confidence 4555 46688875421 124667777778777 77763211 00 111233444
Q ss_pred HHHHhhc--CCcEEeeeecCC----C--cHHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHH
Q 022271 56 RKTRSLT--ERPFGVGVVLAF----P--HNENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPM 125 (300)
Q Consensus 56 ~~~r~~~--~~P~gvnl~~~~----~--~~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~ 125 (300)
++++... ..|+++|+..+. . ..+.+..+.+.+ ++.+.++..||..+--..+ ... +.+-.++.+
T Consensus 83 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l-------~~~~e~l~~l~~~ 155 (310)
T COG0167 83 EELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRAL-------GQDPELLEKLLEA 155 (310)
T ss_pred HHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhh-------ccCHHHHHHHHHH
Confidence 4443321 225666665442 1 245666667777 8999998888731111111 000 123344445
Q ss_pred HHHhhCCCCCcEEEccC--CCChHHHHHH-HHCCCcEEEec
Q 022271 126 VVDLIGDRDIPIIAAGG--IVDARGYVAA-LSLGAQGICLG 163 (300)
Q Consensus 126 v~~~~~~~~iPViaaGG--I~~g~~v~aa-l~lGAdgV~~G 163 (300)
|++.. ++||++==. +.+-.+++++ ...|+||+.+=
T Consensus 156 vk~~~---~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~ 193 (310)
T COG0167 156 VKAAT---KVPVFVKLAPNITDIDEIAKAAEEAGADGLIAI 193 (310)
T ss_pred HHhcc---cCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 55554 688876433 5555555544 45899999874
No 342
>PLN02826 dihydroorotate dehydrogenase
Probab=87.57 E-value=8.7 Score=37.24 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=55.1
Q ss_pred cEEeeeecCCC----cHHHHHHHHHc--CCcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHHHHhhC------
Q 022271 65 PFGVGVVLAFP----HNENIKAILSE--KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMVVDLIG------ 131 (300)
Q Consensus 65 P~gvnl~~~~~----~~~~~~~~~e~--g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v~~~~~------ 131 (300)
|+|||+-.+.. .+++++.+... .++.+.++.-+|.-+ |...... ..+..++.+|++..+
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtp--------glr~lq~~~~l~~ll~~V~~~~~~~~~~~ 259 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTP--------GLRKLQGRKQLKDLLKKVLAARDEMQWGE 259 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCC--------CcccccChHHHHHHHHHHHHHHHHhhhcc
Confidence 89999966532 23444444333 389999988776311 2221111 224455555554321
Q ss_pred CCCCcEEEccC-CCChHH---HH-HHHHCCCcEEEecccccc
Q 022271 132 DRDIPIIAAGG-IVDARG---YV-AALSLGAQGICLGTRFVA 168 (300)
Q Consensus 132 ~~~iPViaaGG-I~~g~~---v~-aal~lGAdgV~~GT~fl~ 168 (300)
..++||++=.. ..+.++ ++ .+...|+|||.+-..++.
T Consensus 260 ~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~ 301 (409)
T PLN02826 260 EGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTIS 301 (409)
T ss_pred ccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCc
Confidence 12689999774 233334 33 467799999999876653
No 343
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=87.56 E-value=7.2 Score=36.10 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 51 LRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 51 l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
+.+.++++|+.. .+++-| .....+.++.+++.|+++|-+.--. |+ .++++ ++.
T Consensus 195 i~~av~~~r~~~~~~kIeV----Ev~sleea~ea~~~gaDiI~LDn~s-~e-~~~~a--------------------v~~ 248 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEV----EVENLDELDQALKAGADIIMLDNFT-TE-QMREA--------------------VKR 248 (296)
T ss_pred HHHHHHHHHHhCCCCCEEE----EeCCHHHHHHHHHcCCCEEEeCCCC-hH-HHHHH--------------------HHh
Confidence 556666666542 233332 2234677888888899999887332 33 33322 111
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
++. ++.+-++||| |.+.+.++-..|+|.+.+|..+-
T Consensus 249 ~~~-~~~ieaSGGI-~~~ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 249 TNG-RALLEVSGNV-TLETLREFAETGVDFISVGALTK 284 (296)
T ss_pred hcC-CeEEEEECCC-CHHHHHHHHhcCCCEEEeCcccc
Confidence 221 6789999999 67889999999999999997543
No 344
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=87.50 E-value=3.1 Score=39.16 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=56.0
Q ss_pred CcHHHHHHHHHcC---CcEEEEcCCCCcH--HHHHHHHH--CCCeEeec-------cChhchHHHHHHhhCCCCCcEEEc
Q 022271 75 PHNENIKAILSEK---VAVLQVSWGEYSE--ELVLEAHS--AGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAA 140 (300)
Q Consensus 75 ~~~~~~~~~~e~g---~~~i~~~~G~~~~--~~v~~~~~--~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaa 140 (300)
+.+++.+.+...+ ...+.++.|.-+. +.++.+.+ +|+.++.. ...+..+..+++.+. +++ |.+
T Consensus 80 ~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P--~~~-vIa 156 (346)
T PRK05096 80 SVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWP--DKT-ICA 156 (346)
T ss_pred CHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCC--CCc-EEE
Confidence 3355555554443 2344555565432 34444555 47776654 235677888887762 555 678
Q ss_pred cCCCChHHHHHHHHCCCcEEEec
Q 022271 141 GGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 141 GGI~~g~~v~aal~lGAdgV~~G 163 (300)
|.|.|++.+...+..|||+|=+|
T Consensus 157 GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 157 GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred ecccCHHHHHHHHHcCCCEEEEc
Confidence 99999999999999999998654
No 345
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=87.05 E-value=6.3 Score=37.30 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=30.3
Q ss_pred HHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 123 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 123 l~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
+..+++.. ++|||+- ||.+.+++..+...|+|+|.+..
T Consensus 205 i~~l~~~~---~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 205 IKWLRKHT---KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred HHHHHHhc---CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 34444443 7899888 78999999999999999999843
No 346
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=86.98 E-value=13 Score=35.00 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=30.9
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCCh------HHHHHHHHCCCcEEEeccccc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDA------RGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g------~~v~aal~lGAdgV~~GT~fl 167 (300)
+..++.+++.. ..|||+.-.=+.| .-..+|.++||||+++=..|-
T Consensus 251 l~ai~~lk~~~---~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~ 301 (335)
T PRK08673 251 LSAVPVIKKLT---HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD 301 (335)
T ss_pred HHHHHHHHHhc---CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence 34566666655 7999885443344 345788999999999965553
No 347
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=86.88 E-value=2.4 Score=37.31 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=33.1
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++-+++-.||.+++|++.+-..|..+|.+|-..+-.
T Consensus 237 Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 237 DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhc
Confidence 788999999999999999999999999999777654
No 348
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=86.71 E-value=6.9 Score=35.53 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=84.1
Q ss_pred cccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC-----------------CCCHHHHHHHHH-HHHhh-cCCc
Q 022271 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-----------------WEAPDYLRDLIR-KTRSL-TERP 65 (300)
Q Consensus 5 ~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-----------------~~~~~~l~~~i~-~~r~~-~~~P 65 (300)
+...-..|||.++-+ .-|.+..+..||..+|-..+ |.+..++-.+.. ++--. .+.|
T Consensus 9 ~~i~~~~pIig~gaG-----tGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tP 83 (268)
T PF09370_consen 9 AQIKAGKPIIGAGAG-----TGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTP 83 (268)
T ss_dssp HHHHTT--EEEEEES-----SHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-
T ss_pred HHHhCCCceEEEeec-----cchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCC
Confidence 334456789875432 25777788888888873211 224444333332 22222 2468
Q ss_pred EEeeeecCCCc---HHHHHHHHHcCCcEEEEcC----------------CCC---cHHHHHHHHHCCCe-----------
Q 022271 66 FGVGVVLAFPH---NENIKAILSEKVAVLQVSW----------------GEY---SEELVLEAHSAGVK----------- 112 (300)
Q Consensus 66 ~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~----------------G~~---~~~~v~~~~~~G~~----------- 112 (300)
+-.++...+|+ ...++.+.+.|...|...- |.- --+.+..+|+.|..
T Consensus 84 ViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A 163 (268)
T PF09370_consen 84 VIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQA 163 (268)
T ss_dssp EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHH
T ss_pred EEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHH
Confidence 77777777765 5678888888888775421 110 01344444444433
Q ss_pred ---------Eeec---------cC---------hhchHHHHHHhhCC--CC-CcEEEccCCCChHHHHHHHH--CCCcEE
Q 022271 113 ---------VVPQ---------DG---------LISLLPMVVDLIGD--RD-IPIIAAGGIVDARGYVAALS--LGAQGI 160 (300)
Q Consensus 113 ---------v~~~---------~~---------~~~ll~~v~~~~~~--~~-iPViaaGGI~~g~~v~aal~--lGAdgV 160 (300)
++.. .+ ....+.++.++.+. .+ +-++-.|-|.+++|+...+. -|++|.
T Consensus 164 ~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf 243 (268)
T PF09370_consen 164 RAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGF 243 (268)
T ss_dssp HHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEE
T ss_pred HHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEE
Confidence 3221 00 22355566665432 13 55666777999999999998 578999
Q ss_pred Eeccccc
Q 022271 161 CLGTRFV 167 (300)
Q Consensus 161 ~~GT~fl 167 (300)
+=||.|=
T Consensus 244 ~G~Ss~E 250 (268)
T PF09370_consen 244 IGASSME 250 (268)
T ss_dssp EESTTTT
T ss_pred ecccchh
Confidence 9888763
No 349
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=86.21 E-value=9.9 Score=34.44 Aligned_cols=125 Identities=15% Similarity=0.209 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH----HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~----aa 152 (300)
.++++.+++.|++.|.+. |.-. +... +...--..++..+++..++ ++||++.-|=.+-++.. .+
T Consensus 21 ~~~i~~l~~~Gv~gi~~~-GstG-E~~~---------ls~~Er~~l~~~~~~~~~~-~~~vi~gv~~~~~~~~i~~a~~a 88 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVL-GTTG-EAPT---------LTDEERKEVIEAVVEAVAG-RVPVIAGVGANSTREAIELARHA 88 (281)
T ss_pred HHHHHHHHHcCCCEEEEC-CCCc-cccc---------CCHHHHHHHHHHHHHHhCC-CCeEEEecCCccHHHHHHHHHHH
Confidence 567888888899888765 3311 1000 0000023455666666543 68988776655555433 44
Q ss_pred HHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhhc
Q 022271 153 LSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 217 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 217 (300)
-.+|||+|++-.++........--.|=+.|.++.+..+ .++. .|...+..+......++.+
T Consensus 89 ~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi-~iYn---~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 89 EEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPV-ILYN---IPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCE-EEEE---CccccCCCCCHHHHHHHhc
Confidence 56899999999998876321112223334444443332 2443 2455556676666666543
No 350
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=86.04 E-value=25 Score=31.45 Aligned_cols=170 Identities=18% Similarity=0.189 Sum_probs=89.7
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecC------------CCCCCHHHHHHHHHHHHhhcCCcEEeee
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA------------PDWEAPDYLRDLIRKTRSLTERPFGVGV 70 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~------------~~~~~~~~l~~~i~~~r~~~~~P~gvnl 70 (300)
|.+++.-.-||+. | ++-++--+..+.++|.=.++-. .+..+.+++.+.++.+...++.|+-+.+
T Consensus 1 ~r~l~~~~~~i~~-~---~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~ 76 (243)
T cd00377 1 LRALLESGGPLVL-P---GAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADA 76 (243)
T ss_pred ChhHHhCCCcEEe-c---CCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEc
Confidence 3455554456663 2 4556666666666664333211 1134668888888888887888987766
Q ss_pred ecCCCc----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCC-CCCcEEEc-----
Q 022271 71 VLAFPH----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGD-RDIPIIAA----- 140 (300)
Q Consensus 71 ~~~~~~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~-~~iPViaa----- 140 (300)
-.-... .+.++.+.+.|+..|.+--+..++. . .+-.+..++...-....+..++++.++ .+++|+|-
T Consensus 77 ~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~-~--g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~ 153 (243)
T cd00377 77 DTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKK-C--GHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALL 153 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCcc-c--cCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchh
Confidence 543322 3457777788999887721111110 0 000111111111122334445555433 36777776
Q ss_pred ---cCCCChHH-HHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCC
Q 022271 141 ---GGIVDARG-YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDK 187 (300)
Q Consensus 141 ---GGI~~g~~-v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~ 187 (300)
.|+.+.-. ..++..+|||+|++=+.. +..+-+++.+.-+
T Consensus 154 ~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~ 196 (243)
T cd00377 154 AGEEGLDEAIERAKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPD 196 (243)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCC
Confidence 23322221 335566999999985443 4455555665533
No 351
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=85.82 E-value=27 Score=31.74 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=29.7
Q ss_pred chHHHHHHhhCCCCCcEEE-ccCCCC-----hHHHHHHHHCCCcEEEeccccc
Q 022271 121 SLLPMVVDLIGDRDIPIIA-AGGIVD-----ARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPVia-aGGI~~-----g~~v~aal~lGAdgV~~GT~fl 167 (300)
..++.+++.. +.||+. ..-... .....++.++||+|+++=+.|-
T Consensus 186 ~~i~~lk~~~---~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 186 AAVAVIKELS---HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred HHHHHHHhcc---CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 3455555444 799999 344333 4567788999999999865543
No 352
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=85.65 E-value=29 Score=31.91 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=44.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.+.++.++.+.+ ++|++.=||=+.+. ++.++..+|..-|-++|-+... .....|+.+
T Consensus 190 d~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a----~~~~~~~~~ 247 (284)
T PRK12857 190 DFDRLAKIKELV---NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREA----FVARLREVL 247 (284)
T ss_pred CHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHH----HHHHHHHHH
Confidence 467888898887 79999999988775 4778999999999999987665 234445544
No 353
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=85.48 E-value=7.6 Score=36.34 Aligned_cols=106 Identities=13% Similarity=0.208 Sum_probs=58.9
Q ss_pred HHHHHHHhh--cCCcEEeeeecCCCc------HHHHHHHHHc--CCcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhc
Q 022271 53 DLIRKTRSL--TERPFGVGVVLAFPH------NENIKAILSE--KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLIS 121 (300)
Q Consensus 53 ~~i~~~r~~--~~~P~gvnl~~~~~~------~~~~~~~~e~--g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ 121 (300)
..++++++. .+.|+++|+...... ++..+.+.+. .++.+.++++||... |...... .....
T Consensus 116 ~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~--------g~~~~~~~~~~~~ 187 (327)
T cd04738 116 AVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP--------GLRDLQGKEALRE 187 (327)
T ss_pred HHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC--------ccccccCHHHHHH
Confidence 344444433 468999999876421 3444444443 489999999997421 1111111 12345
Q ss_pred hHHHHHHhhC--CCCCcEEEcc--CCC--ChHHHHHHH-HCCCcEEEecccc
Q 022271 122 LLPMVVDLIG--DRDIPIIAAG--GIV--DARGYVAAL-SLGAQGICLGTRF 166 (300)
Q Consensus 122 ll~~v~~~~~--~~~iPViaaG--GI~--~g~~v~aal-~lGAdgV~~GT~f 166 (300)
++..+++.+. ..++||++== +.. +-..+++++ ..|||+|.+-.++
T Consensus 188 iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 188 LLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred HHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 6666766652 0126766532 333 334455444 4899999876554
No 354
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=85.11 E-value=26 Score=33.34 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=29.7
Q ss_pred hchHHHHHHhhCCCCCcEEEcc----CCCCh--HHHHHHHHCCCcEEEecccc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAG----GIVDA--RGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaG----GI~~g--~~v~aal~lGAdgV~~GT~f 166 (300)
+..++.+++.. ++|||+.- |.++. .-..+|+++||||+++=+.|
T Consensus 260 l~ai~~lk~~~---~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~ 309 (352)
T PRK13396 260 LSVIPVLRSLT---HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHP 309 (352)
T ss_pred HHHHHHHHHhh---CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 45677776665 79998864 33322 23557788999999995544
No 355
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=84.81 E-value=1.6 Score=43.37 Aligned_cols=60 Identities=28% Similarity=0.389 Sum_probs=45.3
Q ss_pred HHHHHHHHCCCeEeeccC-------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 101 ELVLEAHSAGVKVVPQDG-------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~~~-------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
+.++.+.++|+.+++... .+..+.++++... ++||++ |.+.|.+++..++.+|||+|.+|
T Consensus 244 ~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~--~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 244 ERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYP--HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCC--CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 445556678888876421 2456777777642 577666 99999999999999999999864
No 356
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.62 E-value=27 Score=30.64 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=81.2
Q ss_pred HHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcC---CcEEEEcCCCC-cHH
Q 022271 27 LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEK---VAVLQVSWGEY-SEE 101 (300)
Q Consensus 27 la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g---~~~i~~~~G~~-~~~ 101 (300)
+...+.+.+.+.++-. .++++.....+.+.+.. -+ .+=+....+. .+.++.+.+.- ++ +.+..|.. ..+
T Consensus 6 ~~~~l~~~~vi~vir~---~~~~~a~~~~~al~~~G-i~-~iEit~~~~~a~~~i~~l~~~~~~~p~-~~vGaGTV~~~~ 79 (213)
T PRK06552 6 ILTKLKANGVVAVVRG---ESKEEALKISLAVIKGG-IK-AIEVTYTNPFASEVIKELVELYKDDPE-VLIGAGTVLDAV 79 (213)
T ss_pred HHHHHHHCCEEEEEEC---CCHHHHHHHHHHHHHCC-CC-EEEEECCCccHHHHHHHHHHHcCCCCC-eEEeeeeCCCHH
Confidence 4455666777777654 36666655555554421 11 1222333232 34455554432 23 33444542 345
Q ss_pred HHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHH
Q 022271 102 LVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 181 (300)
Q Consensus 102 ~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~ 181 (300)
-++...++|...+... .+-+++.++.++.++|++. |..|+.++..++.+|||.|.+ | ..+. ....|-+.
T Consensus 80 ~~~~a~~aGA~FivsP---~~~~~v~~~~~~~~i~~iP--G~~T~~E~~~A~~~Gad~vkl---F--Pa~~-~G~~~ik~ 148 (213)
T PRK06552 80 TARLAILAGAQFIVSP---SFNRETAKICNLYQIPYLP--GCMTVTEIVTALEAGSEIVKL---F--PGST-LGPSFIKA 148 (213)
T ss_pred HHHHHHHcCCCEEECC---CCCHHHHHHHHHcCCCEEC--CcCCHHHHHHHHHcCCCEEEE---C--Cccc-CCHHHHHH
Confidence 5666777787776532 3445555554434788876 899999999999999999997 3 2222 33555555
Q ss_pred HHc
Q 022271 182 LVE 184 (300)
Q Consensus 182 i~~ 184 (300)
+..
T Consensus 149 l~~ 151 (213)
T PRK06552 149 IKG 151 (213)
T ss_pred Hhh
Confidence 544
No 357
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=84.48 E-value=29 Score=31.35 Aligned_cols=109 Identities=14% Similarity=0.027 Sum_probs=58.0
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecC------------CCCCCHHHHHHHHHHHHhhcCCc-EEe
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA------------PDWEAPDYLRDLIRKTRSLTERP-FGV 68 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~------------~~~~~~~~l~~~i~~~r~~~~~P-~gv 68 (300)
+|.++..-..||+. | ++-+...|..+.++|.=.++.. .+..+.+++...++.+++.++.| +-+
T Consensus 3 ~lr~l~~~~~~l~~-~---~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~via 78 (254)
T cd06557 3 DLQKMKKAGEKIVM-L---TAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVA 78 (254)
T ss_pred hHHHHHhCCCcEEE-E---eCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEE
Confidence 35566655567764 2 4556667777777774333211 01246777888888887777888 444
Q ss_pred eee-cCCCc--H---H-HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe
Q 022271 69 GVV-LAFPH--N---E-NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 69 nl~-~~~~~--~---~-~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~ 114 (300)
.+- ..... + + ..+.+.+.|+..|-+--|....+.|+.+.++|+.|+
T Consensus 79 D~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~~~~~~I~al~~agipV~ 131 (254)
T cd06557 79 DMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGGAEVAETIRALVDAGIPVM 131 (254)
T ss_pred eCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHcCCCee
Confidence 442 11111 1 1 233444477777766433212344455555665544
No 358
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=83.79 E-value=6.5 Score=34.51 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
....+.+++.|.+.|.+.+-+|. ..+.++++++.. .--+|.||=|-|++++.++.++|
T Consensus 28 ~~~a~Ali~gGi~~IEITl~sp~-------------------a~e~I~~l~~~~---p~~lIGAGTVL~~~q~~~a~~aG 85 (211)
T COG0800 28 LPLAKALIEGGIPAIEITLRTPA-------------------ALEAIRALAKEF---PEALIGAGTVLNPEQARQAIAAG 85 (211)
T ss_pred HHHHHHHHHcCCCeEEEecCCCC-------------------HHHHHHHHHHhC---cccEEccccccCHHHHHHHHHcC
Confidence 34567777888888887776541 234555666665 23489999999999999999998
Q ss_pred CcEEE
Q 022271 157 AQGIC 161 (300)
Q Consensus 157 AdgV~ 161 (300)
|+.++
T Consensus 86 a~fiV 90 (211)
T COG0800 86 AQFIV 90 (211)
T ss_pred CCEEE
Confidence 87553
No 359
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=83.77 E-value=5.2 Score=37.53 Aligned_cols=108 Identities=15% Similarity=0.219 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCc--EEEEcCCCCcH--HHHHHHHHCCC--eEeec-------
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA--VLQVSWGEYSE--ELVLEAHSAGV--KVVPQ------- 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~--~i~~~~G~~~~--~~v~~~~~~G~--~v~~~------- 116 (300)
.+.+.+.++-+.++. +++ +.....++......+.+++ ++..+.|..++ +-++++-++|+ .++..
T Consensus 48 ~iN~~LA~~a~~~G~-~~~--~~k~~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~ 124 (326)
T PRK05458 48 IIDEKIAEWLAENGY-FYI--MHRFDPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHS 124 (326)
T ss_pred hhHHHHHHHHHHcCC-EEE--EecCCHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCch
Confidence 566666666444422 222 2211223334444444443 34444454332 34555567754 66553
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.....++.++++... ++| +.+|.|.|.+++..+..+|||++.+|
T Consensus 125 ~~~~e~I~~ir~~~p--~~~-vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 125 DSVINMIQHIKKHLP--ETF-VIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHHHHhhCC--CCe-EEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 224567777777652 344 56777999999999999999999886
No 360
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=83.51 E-value=13 Score=34.19 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=70.3
Q ss_pred HHHHHHHHH-cCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHH----HH
Q 022271 77 NENIKAILS-EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VA 151 (300)
Q Consensus 77 ~~~~~~~~e-~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v----~a 151 (300)
..+++.+++ .|++.|.+. |.-. +... +...--..++..+++.+++ ++|||+.=|=.+-+++ ..
T Consensus 27 ~~li~~l~~~~Gv~gi~v~-GstG-E~~~---------Ls~eEr~~~~~~~~~~~~~-~~~viagvg~~~t~~ai~~a~~ 94 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVG-GSTG-EAFL---------LSTEEKKQVLEIVAEEAKG-KVKLIAQVGSVNTAEAQELAKY 94 (293)
T ss_pred HHHHHHHHhcCCCCEEEEC-CCcc-cccc---------CCHHHHHHHHHHHHHHhCC-CCCEEecCCCCCHHHHHHHHHH
Confidence 567888888 999988775 3211 1000 0000023455566666643 6899986654455554 34
Q ss_pred HHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhhc
Q 022271 152 ALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 217 (300)
Q Consensus 152 al~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 217 (300)
+-.+|||+|++-+++........--.|=+.+.++.+.. ..++. .|...+..+..+++.++.+
T Consensus 95 a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lP-v~iYn---~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 95 ATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNP-MIVYN---IPALTGVNLSLDQFNELFT 156 (293)
T ss_pred HHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCC-EEEEe---CchhhccCCCHHHHHHHhc
Confidence 56799999999999876642112222334444444433 23443 2444455666666666543
No 361
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=83.42 E-value=14 Score=33.85 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+++.++++|+. .|+-.++-......++++.++++|+|+|-+. ...|+++-+.. .++ .
T Consensus 173 ~i~~Av~~aR~~--~~~~~kIEVEvesle~~~eAl~agaDiImLD-Nm~~e~~~~av--------------~~l----~- 230 (280)
T COG0157 173 SITEAVRRARAA--APFTKKIEVEVESLEEAEEALEAGADIIMLD-NMSPEELKEAV--------------KLL----G- 230 (280)
T ss_pred cHHHHHHHHHHh--CCCCceEEEEcCCHHHHHHHHHcCCCEEEec-CCCHHHHHHHH--------------HHh----c-
Confidence 366778888875 3665666665567889999999999999997 33344332221 111 1
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
+. .++-+=++||| +.+.+.++-..|.|.+-+|...
T Consensus 231 ~~-~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 231 LA-GRALLEASGGI-TLENIREYAETGVDVISVGALT 265 (280)
T ss_pred cC-CceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccc
Confidence 11 14667889999 6788999999999999998543
No 362
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=83.39 E-value=15 Score=34.12 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=75.7
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC--------------------------C--CCHHHHHHHHHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------------------------W--EAPDYLRDLIRKTR 59 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------------------------~--~~~~~l~~~i~~~r 59 (300)
.++.||+.|.=. ...+.+....+..+| +|.+-... + ...+...+.+++.+
T Consensus 10 ~l~NPv~~AsG~-~~~~~e~~~~~~~~g-~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~i~~~~ 87 (310)
T PRK02506 10 KFDNCLMNAAGV-YCMTKEELEEVEASA-AGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDYVLELQ 87 (310)
T ss_pred ECCCCCEeCCCC-CCCCHHHHHHHHHcC-CcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHHHHHHH
Confidence 367899987632 224566666677777 66552210 0 12355555566655
Q ss_pred hhc-CCcEEeeeecCCC--cHHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHHHHhhCCCC
Q 022271 60 SLT-ERPFGVGVVLAFP--HNENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMVVDLIGDRD 134 (300)
Q Consensus 60 ~~~-~~P~gvnl~~~~~--~~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v~~~~~~~~ 134 (300)
+.. +.|+-+++..... +.+.++.+.+.+ ++.|.++..||- +. .+..+..+ ..+..++..|++.+ +
T Consensus 88 ~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn---~~----~~~~~g~d~~~~~~i~~~v~~~~---~ 157 (310)
T PRK02506 88 KKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPN---VP----GKPQIAYDFETTEQILEEVFTYF---T 157 (310)
T ss_pred hhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCC---CC----CccccccCHHHHHHHHHHHHHhc---C
Confidence 543 5888888766443 244556666666 899999988862 11 11111111 12445666666665 6
Q ss_pred CcEEE--ccCCCChHHHHHHH-HCCCcE
Q 022271 135 IPIIA--AGGIVDARGYVAAL-SLGAQG 159 (300)
Q Consensus 135 iPVia--aGGI~~g~~v~aal-~lGAdg 159 (300)
+||++ .--+ +-.+++++. .+++++
T Consensus 158 ~Pv~vKlsp~~-~~~~~a~~~~~~~~~g 184 (310)
T PRK02506 158 KPLGVKLPPYF-DIVHFDQAAAIFNKFP 184 (310)
T ss_pred CccEEecCCCC-CHHHHHHHHHHhCcCc
Confidence 78774 2223 445555443 234443
No 363
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=83.37 E-value=30 Score=30.16 Aligned_cols=122 Identities=17% Similarity=0.128 Sum_probs=71.0
Q ss_pred HHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHH-cCCcEEEEcCCCC-cHHHHHHH
Q 022271 30 AVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILS-EKVAVLQVSWGEY-SEELVLEA 106 (300)
Q Consensus 30 avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e-~g~~~i~~~~G~~-~~~~v~~~ 106 (300)
...+.+.+.++-. .+++++.+..+.+.+-. --.+-+....+. .+.++.+.+ ++.+ +.+..|.. ..+-++..
T Consensus 6 ~l~~~~~~~v~r~---~~~~~~~~~~~a~~~gG--i~~iEvt~~~~~~~~~i~~l~~~~~~~-~~iGaGTV~~~~~~~~a 79 (206)
T PRK09140 6 PFTKLPLIAILRG---ITPDEALAHVGALIEAG--FRAIEIPLNSPDPFDSIAALVKALGDR-ALIGAGTVLSPEQVDRL 79 (206)
T ss_pred HHHhCCEEEEEeC---CCHHHHHHHHHHHHHCC--CCEEEEeCCCccHHHHHHHHHHHcCCC-cEEeEEecCCHHHHHHH
Confidence 3455666776654 37777766666665421 112334333332 345555554 3334 33444432 35667777
Q ss_pred HHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 107 HSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 107 ~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
.++|...++....-.-+.+.+.. .++|++.. ..|..++..+..+|||.|.+
T Consensus 80 ~~aGA~fivsp~~~~~v~~~~~~---~~~~~~~G--~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 80 ADAGGRLIVTPNTDPEVIRRAVA---LGMVVMPG--VATPTEAFAALRAGAQALKL 130 (206)
T ss_pred HHcCCCEEECCCCCHHHHHHHHH---CCCcEEcc--cCCHHHHHHHHHcCCCEEEE
Confidence 88888888753322222222222 25666554 99999999999999999985
No 364
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=83.30 E-value=1.9 Score=42.29 Aligned_cols=55 Identities=13% Similarity=0.389 Sum_probs=47.9
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~ 60 (300)
|++-++++.||+.+||. .+|..+|+.++++.|++|+|.. + +++++-.++++++++
T Consensus 27 ~~~~~~l~~p~~s~~md-tvTe~ema~~ma~~gg~GvI~~-n-~~~e~q~~~V~~Vk~ 81 (450)
T TIGR01302 27 ITRNIKLNIPILSSPMD-TVTESRMAIAMAREGGIGVIHR-N-MSIEEQAEQVKRVKR 81 (450)
T ss_pred cccccCcCCCeeecCCC-ccCHHHHHHHHHhcCCCceeec-C-CCHHHHHHHHhhhcc
Confidence 56778899999999998 7999999999999999999986 4 678877777777765
No 365
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=83.23 E-value=36 Score=30.97 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=80.5
Q ss_pred HHHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc--CCcEEeeeecCCCc--HHHHHHHHHcCCcEEEEcC
Q 022271 25 PELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~ 95 (300)
.+++.-..++|.=|++.++. .++.++-.+.++.+.+.. +.|+-+++-..... .+.++.+.+.|++.+.+..
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP 104 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec
Confidence 46777777888878775532 257777777777776643 35776666543321 4566777778888776531
Q ss_pred ---CCC-cHHHHHHHH----HCCCeEeec----------------------------c--ChhchHHHHHHhhCCCCCcE
Q 022271 96 ---GEY-SEELVLEAH----SAGVKVVPQ----------------------------D--GLISLLPMVVDLIGDRDIPI 137 (300)
Q Consensus 96 ---G~~-~~~~v~~~~----~~G~~v~~~----------------------------~--~~~~ll~~v~~~~~~~~iPV 137 (300)
..+ .+++++..+ ..+..++.. . +.+.-+.++..... .+..|
T Consensus 105 P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~~~~~~~~~~~~~~~-~~~~v 183 (289)
T PF00701_consen 105 PYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSSGDLERLIQLLRAVG-PDFSV 183 (289)
T ss_dssp STSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESSSBHHHHHHHHHHSS-TTSEE
T ss_pred cccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCchhHHHHHHHhhhcc-cCeee
Confidence 111 222332221 234444421 1 12222334444432 14443
Q ss_pred EEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 138 IAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 138 iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
..| +...+..++.+|++|++.|+..+..++
T Consensus 184 -~~G---~d~~~~~~l~~G~~G~is~~~n~~P~~ 213 (289)
T PF00701_consen 184 -FCG---DDELLLPALAAGADGFISGLANVFPEL 213 (289)
T ss_dssp -EES---SGGGHHHHHHTTSSEEEESGGGTHHHH
T ss_pred -ecc---ccccccccccccCCEEEEcccccChHH
Confidence 444 555688999999999999998877644
No 366
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=82.91 E-value=5.1 Score=35.18 Aligned_cols=79 Identities=10% Similarity=0.089 Sum_probs=53.4
Q ss_pred HHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHH---H
Q 022271 82 AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVA---A 152 (300)
Q Consensus 82 ~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~a---a 152 (300)
.+...|.+++.+....|++++++.+++.+..++.. ..++..++++.+.++ ..+++|+..|...+.+-... +
T Consensus 111 ~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~~~~~~~~~~~ 190 (213)
T cd02069 111 ILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAATSRKHTAVKIAP 190 (213)
T ss_pred HHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEChhcCHHHHhhhhcc
Confidence 34457999999988888899999999988887764 123334444444442 23788888888777655433 2
Q ss_pred HHCCCcEE
Q 022271 153 LSLGAQGI 160 (300)
Q Consensus 153 l~lGAdgV 160 (300)
-..|||+-
T Consensus 191 ~~~gad~y 198 (213)
T cd02069 191 EYDGPVVY 198 (213)
T ss_pred ccCCCceE
Confidence 34788863
No 367
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=82.39 E-value=38 Score=30.60 Aligned_cols=141 Identities=21% Similarity=0.213 Sum_probs=73.9
Q ss_pred HHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc--CCcEEeeeecCCC--cHHHHHHHHHcCCcEEEEcC-
Q 022271 26 ELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFP--HNENIKAILSEKVAVLQVSW- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~--~~~~~~~~~e~g~~~i~~~~- 95 (300)
+++.-..+.|.=|++.++. .++.++-++.++.+++.. +.|+-+++..... ..+..+.+.+.|++.+.+..
T Consensus 22 ~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 5555556667666664432 357777777777776654 3465555443221 13445566666777665531
Q ss_pred ---CCCcHHHHHHHH---H-CCCeEeec------------------------------cChhchHHHHHHhhCCCCCcEE
Q 022271 96 ---GEYSEELVLEAH---S-AGVKVVPQ------------------------------DGLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 96 ---G~~~~~~v~~~~---~-~G~~v~~~------------------------------~~~~~ll~~v~~~~~~~~iPVi 138 (300)
...++++++..+ + .++.++.. .+.+..+.++++... .++.|+
T Consensus 102 ~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~~d~~~~~~~~~~~~-~~~~v~ 180 (281)
T cd00408 102 YYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLDRLTRLIALLG-PDFAVL 180 (281)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhcC-CCeEEE
Confidence 000122222221 1 23333211 112334444544432 134333
Q ss_pred EccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.|. ...+...+.+|++|.+.|+..+..++
T Consensus 181 -~G~---d~~~~~~l~~G~~G~i~~~~n~~p~~ 209 (281)
T cd00408 181 -SGD---DDLLLPALALGADGAISGAANVAPKL 209 (281)
T ss_pred -Ecc---hHHHHHHHHcCCCEEEehHHhhCHHH
Confidence 332 55777889999999999987666543
No 368
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=82.20 E-value=27 Score=35.38 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=83.4
Q ss_pred HhCCceEEecCCCCCCHHHHHHHHHHHHhhc----------CCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcCCCCcH
Q 022271 32 ANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT----------ERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYSE 100 (300)
Q Consensus 32 s~aGglG~i~~~~~~~~~~l~~~i~~~r~~~----------~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~G~~~~ 100 (300)
+..|.+|++.. ...+++++++..+.++... +.-+-+..+...|. ...++.+.+ ++|++++...
T Consensus 380 ~~~G~~~Im~P-mV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~-~vDf~sIGtn---- 453 (565)
T TIGR01417 380 SAYGKLRIMFP-MVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAK-EVDFFSIGTN---- 453 (565)
T ss_pred HhcCCCeEEec-CCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHh-hCCEEEEChh----
Confidence 45688888864 3467888776666555310 11122444444333 344666666 8999988532
Q ss_pred HHHHHHHH---CCCeEe--ec---cChhchHHHHHHhhCCCCCcEEEccCC-CChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 101 ELVLEAHS---AGVKVV--PQ---DGLISLLPMVVDLIGDRDIPIIAAGGI-VDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 101 ~~v~~~~~---~G~~v~--~~---~~~~~ll~~v~~~~~~~~iPViaaGGI-~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
++....-. ..-.+. .+ ...+.++.++.++.+..++||-..|.+ +|+..+...+.+|.+.+.|+...+..
T Consensus 454 DLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~~~i~~-- 531 (565)
T TIGR01417 454 DLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMSASSILR-- 531 (565)
T ss_pred HHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEChHhHHH--
Confidence 33332110 000011 11 345677777777654447999877764 68888888899999999998776643
Q ss_pred cCCCHHHHHHHHc
Q 022271 172 SYAHPEYKRKLVE 184 (300)
Q Consensus 172 s~~~~~~k~~i~~ 184 (300)
.|+.|.+
T Consensus 532 ------~k~~i~~ 538 (565)
T TIGR01417 532 ------IKMIIRK 538 (565)
T ss_pred ------HHHHHHh
Confidence 5665554
No 369
>KOG4202 consensus Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=82.06 E-value=11 Score=32.28 Aligned_cols=100 Identities=22% Similarity=0.244 Sum_probs=63.3
Q ss_pred CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccC-----hhchHHHHH----------
Q 022271 63 ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDG-----LISLLPMVV---------- 127 (300)
Q Consensus 63 ~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~-----~~~ll~~v~---------- 127 (300)
.+|.-|+++.++|.+..+..+-+.+.++|.++ |..+.+.+.++-..-++|++... .+..+|+.-
T Consensus 91 p~~~lVGVF~nqp~e~il~~~~~~~ldiVQLH-G~es~~~~~~L~rpvikvfpln~n~~~~~~~~vP~~d~~lvdsetGG 169 (227)
T KOG4202|consen 91 PAKKLVGVFVNQPEETILRAADSSDLDIVQLH-GNESRAAFSRLVRPVIKVFPLNANEDGKLLNEVPEEDWILVDSETGG 169 (227)
T ss_pred cchheEEEeecCCHHHHHHHHhhcCCceEEec-CcccHHHHHHhCCceEEEEecCchhhhHhhccCCchhheeeccccCc
Confidence 34556888888888889999999999999999 55577777776555555554310 111122111
Q ss_pred -----------HhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEecc
Q 022271 128 -----------DLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGT 164 (300)
Q Consensus 128 -----------~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT 164 (300)
.-.-...-|-+.|||+ +++-+..||. ++-+||=+-+
T Consensus 170 ~G~~~dW~~~s~~~vr~~~~~~LAGGl-tP~NV~dAlsi~~p~gvDVSs 217 (227)
T KOG4202|consen 170 SGKGFDWAQFSLPSVRSRNGWLLAGGL-TPTNVSDALSILQPDGVDVSS 217 (227)
T ss_pred CcCccCHHHhcCccccccCceEEecCC-CccchHHhhhhcCCceeeccC
Confidence 0000012356788888 6777777877 5777776644
No 370
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=82.00 E-value=22 Score=32.02 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=30.7
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
++||+-.|+|.......-+...+.||+.+|++-+
T Consensus 203 ~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl 236 (250)
T PRK00042 203 KVRILYGGSVKPDNAAELMAQPDIDGALVGGASL 236 (250)
T ss_pred CceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeee
Confidence 5899999999998888777889999999999887
No 371
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=81.90 E-value=4.6 Score=36.54 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=49.8
Q ss_pred cHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 99 SEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+.++.....++|+..+.. .|.+..+.++++++ ++||+.-==|-|+.++..+..+|||+|.+=.++|-..
T Consensus 70 ~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~---~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~ 145 (254)
T PF00218_consen 70 PAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAV---DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDD 145 (254)
T ss_dssp HHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHS---SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHh---CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHH
Confidence 456666666666655433 35788899999988 8999999999999999999999999999977776553
No 372
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=81.73 E-value=6.5 Score=35.61 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=51.3
Q ss_pred HHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 100 EELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.++.....+.|...+-. .+.+..+..+++.+ ++||+.--=|.+..++..+..+|||+|.+.-.++
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v---~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV---SLPVLRKDFIIDPYQIYEARAAGADAILLIVAAL 144 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc---CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccC
Confidence 45555556666654432 35678888898887 8999988889999999999999999999987775
No 373
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=81.55 E-value=10 Score=29.33 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=20.3
Q ss_pred CCcEEEccCCCChHHHHHHHH--CCCcEEEecc
Q 022271 134 DIPIIAAGGIVDARGYVAALS--LGAQGICLGT 164 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~--lGAdgV~~GT 164 (300)
++++++.|...+... ...+. .|+|.|++|-
T Consensus 81 ~~~iv~GG~~~t~~~-~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 81 NIPIVVGGPHATADP-EEILREYPGIDYVVRGE 112 (121)
T ss_dssp TSEEEEEESSSGHHH-HHHHHHHHTSEEEEEET
T ss_pred CCEEEEECCchhcCh-HHHhccCcCcceecCCC
Confidence 677777777755333 33443 8999999984
No 374
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=81.51 E-value=27 Score=31.75 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHhCCceEEecCC--------CC-----CCHHHHHHHHHHHHhhcCCcEEeeeecCCCc----H----HHH
Q 022271 22 ISGPELVAAVANAGGLGLLRAP--------DW-----EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH----N----ENI 80 (300)
Q Consensus 22 ~s~~~la~avs~aGglG~i~~~--------~~-----~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~----~----~~~ 80 (300)
.-+..+|..+.++| +.++-.+ +| .+.|+.....+.+|+-...+|-|-=++..++ + ...
T Consensus 23 aYD~~~A~~~d~ag-vD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA~ 101 (261)
T PF02548_consen 23 AYDYPSARIADEAG-VDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNAG 101 (261)
T ss_dssp --SHHHHHHHHHTT--SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHHH
T ss_pred cccHHHHHHHHHcC-CCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHHH
Confidence 34667788778887 4443111 11 3567777788888877766665543333222 2 234
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEee
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP 115 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~ 115 (300)
+.+.|.|++.|=+-.|....+.++.+.++|+.|+.
T Consensus 102 rl~ke~GadaVKlEGg~~~~~~i~~l~~~GIPV~g 136 (261)
T PF02548_consen 102 RLMKEAGADAVKLEGGAEIAETIKALVDAGIPVMG 136 (261)
T ss_dssp HHHHTTT-SEEEEEBSGGGHHHHHHHHHTT--EEE
T ss_pred HHHHhcCCCEEEeccchhHHHHHHHHHHCCCcEEE
Confidence 55566999999998775557889999999999985
No 375
>PF13941 MutL: MutL protein
Probab=81.40 E-value=29 Score=34.22 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=71.6
Q ss_pred HHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc--HHHHH
Q 022271 27 LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS--EELVL 104 (300)
Q Consensus 27 la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~--~~~v~ 104 (300)
+.+..|-+|||-+...+ ..++-..+.-+++- +.-.-.-+..+.....++.++.+.+.+|++|.++.|... ++.+-
T Consensus 67 ~la~SSAaGGLrmvv~G--lv~~~Ta~AAk~AA-lgAGA~V~~v~s~~l~~~~l~~i~~~~PDiILLaGGtDgG~~~~il 143 (457)
T PF13941_consen 67 VLACSSAAGGLRMVVIG--LVPDLTAEAAKRAA-LGAGARVLQVYSYELTEEDLEEIREIRPDIILLAGGTDGGNKEVIL 143 (457)
T ss_pred EEEECCCCCcceEEEEe--cCHHHHHHHHHHHH-hcCCcEEEEEeccCCCHHHHHHHhccCCCEEEEeCCccCCchHHHH
Confidence 33344667888877663 35544333333332 222223355555556688999999999999999876531 12221
Q ss_pred HHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEec
Q 022271 105 EAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLG 163 (300)
Q Consensus 105 ~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~G 163 (300)
..-..+.+. ..++|||.||-..-.+++.+.|. .|.+-+..-
T Consensus 144 ----------------~nA~~La~~--~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~ 185 (457)
T PF13941_consen 144 ----------------HNAEMLAEA--NLRIPVIYAGNKAAQDEVEEILEKAGKEVVITE 185 (457)
T ss_pred ----------------HHHHHHHhC--CCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeC
Confidence 111122222 13799999999999999999999 677766654
No 376
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=81.21 E-value=18 Score=33.11 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH----HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~----aa 152 (300)
..+++.+++.|++.|.+. |...+ ... +...--..++..+++.+++ ++|||+.-|- +-++.. .+
T Consensus 24 ~~l~~~l~~~Gv~gi~v~-GstGE-~~~---------Ls~eEr~~l~~~~~~~~~~-~~pvi~gv~~-~t~~~i~~a~~a 90 (289)
T cd00951 24 RAHVEWLLSYGAAALFAA-GGTGE-FFS---------LTPDEYAQVVRAAVEETAG-RVPVLAGAGY-GTATAIAYAQAA 90 (289)
T ss_pred HHHHHHHHHcCCCEEEEC-cCCcC-ccc---------CCHHHHHHHHHHHHHHhCC-CCCEEEecCC-CHHHHHHHHHHH
Confidence 457788888899988765 32110 000 0000012455566666543 6999997775 445543 34
Q ss_pred HHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+|||++++-+++.... +...-+.| +.|.++.+.. ..++. .+...+....+.++.
T Consensus 91 ~~~Gad~v~~~pP~y~~~~~~~i~~~f-~~v~~~~~~p-i~lYn------~~g~~l~~~~l~~L~ 147 (289)
T cd00951 91 EKAGADGILLLPPYLTEAPQEGLYAHV-EAVCKSTDLG-VIVYN------RANAVLTADSLARLA 147 (289)
T ss_pred HHhCCCEEEECCCCCCCCCHHHHHHHH-HHHHhcCCCC-EEEEe------CCCCCCCHHHHHHHH
Confidence 459999999999987642 22222323 3344444433 23443 123445555655554
No 377
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=81.01 E-value=18 Score=33.56 Aligned_cols=123 Identities=16% Similarity=0.263 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH----HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~----aa 152 (300)
..+++.+++.|++.|.+. |.. .+.... ...--..++..+++.+++ ++|||+.=|=.+-+++. .|
T Consensus 32 ~~lv~~li~~Gv~Gi~v~-Gst-GE~~~L---------t~eEr~~v~~~~~~~~~g-rvpvi~Gv~~~~t~~ai~~a~~A 99 (309)
T cd00952 32 ARLVERLIAAGVDGILTM-GTF-GECATL---------TWEEKQAFVATVVETVAG-RVPVFVGATTLNTRDTIARTRAL 99 (309)
T ss_pred HHHHHHHHHcCCCEEEEC-ccc-ccchhC---------CHHHHHHHHHHHHHHhCC-CCCEEEEeccCCHHHHHHHHHHH
Confidence 456788888899988775 331 111100 000012455556666643 69998776644444433 34
Q ss_pred HHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCC-CcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMD-KTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~-~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+|||+|++-++|.... +...-+ |=+.|.++. +..+ .++. .|...+.-+..+.+.++.
T Consensus 100 ~~~Gad~vlv~~P~y~~~~~~~l~~-yf~~va~a~~~lPv-~iYn---~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 100 LDLGADGTMLGRPMWLPLDVDTAVQ-FYRDVAEAVPEMAI-AIYA---NPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHhCCCEEEECCCcCCCCCHHHHHH-HHHHHHHhCCCCcE-EEEc---CchhcCCCCCHHHHHHHh
Confidence 558999999999976543 222333 334455554 3332 3443 133323345555555543
No 378
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=80.69 E-value=46 Score=30.52 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=86.4
Q ss_pred CCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC----CcH----HHHHHHHHcCCcEEE
Q 022271 21 DISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF----PHN----ENIKAILSEKVAVLQ 92 (300)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~----~~~----~~~~~~~e~g~~~i~ 92 (300)
-++..+|... ++.++.++-+- |..+.+.++..|+...+ .+.|+-+++.... +.+ -....+.+.++|+..
T Consensus 3 lv~~~~~l~~-A~~~~yaV~Af-n~~n~e~~~avi~aAe~-~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~l 79 (281)
T PRK06806 3 LVQMKELLKK-ANQENYGVGAF-SVANMEMVMGAIKAAEE-LNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAV 79 (281)
T ss_pred CCcHHHHHHH-HHHCCceEEEE-EeCCHHHHHHHHHHHHH-hCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEE
Confidence 3666677665 44455554433 44678888888877765 3578777665432 111 112233445666543
Q ss_pred -EcCCCCcHHHHHHHHHCCCeEeeccC-------hhchHHHHHHhhCCCCCcEEEcc-------------C--CCChHHH
Q 022271 93 -VSWGEYSEELVLEAHSAGVKVVPQDG-------LISLLPMVVDLIGDRDIPIIAAG-------------G--IVDARGY 149 (300)
Q Consensus 93 -~~~G~~~~~~v~~~~~~G~~v~~~~~-------~~~ll~~v~~~~~~~~iPViaaG-------------G--I~~g~~v 149 (300)
+..|. ..+.+.++-+.|...+.... .+.+..++++..+..++||=+.+ | ..|++++
T Consensus 80 HlDH~~-~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea 158 (281)
T PRK06806 80 HFDHGM-TFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEA 158 (281)
T ss_pred ECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHH
Confidence 33343 34566666667776664311 22333334433322234443332 2 4688888
Q ss_pred HHHHH-CCCcEEEe--ccccccCcc-cCCCHHHHHHHHcC
Q 022271 150 VAALS-LGAQGICL--GTRFVASEE-SYAHPEYKRKLVEM 185 (300)
Q Consensus 150 ~aal~-lGAdgV~~--GT~fl~t~E-s~~~~~~k~~i~~a 185 (300)
.++.. .|+|.+-+ ||.|-..+. ....-..-+.|.+.
T Consensus 159 ~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~ 198 (281)
T PRK06806 159 KRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDV 198 (281)
T ss_pred HHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHh
Confidence 88774 69998888 998885532 12333334444443
No 379
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=80.49 E-value=9.5 Score=32.94 Aligned_cols=78 Identities=10% Similarity=0.114 Sum_probs=51.9
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC----CCCcEEEccCCCChHHHHHH
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAA 152 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~aa 152 (300)
..+...|.+++.+....|++++++.+++.+..++.. ...+.-+.++.+.+++ .+++|+..|...+.+ . +
T Consensus 106 ~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~~~-~--~ 182 (197)
T TIGR02370 106 TMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVTQD-W--A 182 (197)
T ss_pred HHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcCHH-H--H
Confidence 344467899999988888899999999888877653 1122333444443321 258888888888763 3 4
Q ss_pred HHCCCcEEE
Q 022271 153 LSLGAQGIC 161 (300)
Q Consensus 153 l~lGAdgV~ 161 (300)
-..|||+..
T Consensus 183 ~~~gad~~~ 191 (197)
T TIGR02370 183 DKIGADVYG 191 (197)
T ss_pred HHhCCcEEe
Confidence 456999753
No 380
>PLN02417 dihydrodipicolinate synthase
Probab=80.47 E-value=19 Score=32.85 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH----HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~----aa 152 (300)
.++++.+++.|++.|.+. |... +.... ...--..++..+++.+++ ++||++.=|=.+-+++. .|
T Consensus 25 ~~~i~~l~~~Gv~Gi~~~-GstG-E~~~l---------s~~Er~~~~~~~~~~~~~-~~pvi~gv~~~~t~~~i~~a~~a 92 (280)
T PLN02417 25 DSLVNMQIENGAEGLIVG-GTTG-EGQLM---------SWDEHIMLIGHTVNCFGG-KIKVIGNTGSNSTREAIHATEQG 92 (280)
T ss_pred HHHHHHHHHcCCCEEEEC-ccCc-chhhC---------CHHHHHHHHHHHHHHhCC-CCcEEEECCCccHHHHHHHHHHH
Confidence 567888888999998875 3311 11100 000012345555665543 68998766554555543 35
Q ss_pred HHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+|||+|++-.++.... +...-+.|+ .+.++. - ..++. .|+..+.-+......++.
T Consensus 93 ~~~Gadav~~~~P~y~~~~~~~i~~~f~-~va~~~--p-i~lYn---~P~~tg~~l~~~~l~~l~ 150 (280)
T PLN02417 93 FAVGMHAALHINPYYGKTSQEGLIKHFE-TVLDMG--P-TIIYN---VPGRTGQDIPPEVIFKIA 150 (280)
T ss_pred HHcCCCEEEEcCCccCCCCHHHHHHHHH-HHHhhC--C-EEEEE---ChhHhCcCCCHHHHHHHh
Confidence 579999999999977653 222233333 344443 2 33553 244444555555555554
No 381
>PLN02623 pyruvate kinase
Probab=80.34 E-value=16 Score=37.05 Aligned_cols=86 Identities=23% Similarity=0.264 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHH----HCC--CeEeec-----------------------cC---------
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAH----SAG--VKVVPQ-----------------------DG--------- 118 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~----~~G--~~v~~~-----------------------~~--------- 118 (300)
.+.++..++.++++|.+||=.- .+.+..++ +++ +.++.+ .+
T Consensus 281 ~~di~f~~~~~vD~ialSFVr~-a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~ 359 (581)
T PLN02623 281 WEDIKFGVENKVDFYAVSFVKD-AQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIE 359 (581)
T ss_pred HHHHHHHHHcCCCEEEECCCCC-HHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcH
Confidence 4568888999999999998442 33333332 333 344443 01
Q ss_pred -hhchHHHHHHhhCCCCCcEEEcc---------CCCC---hHHHHHHHHCCCcEEEec
Q 022271 119 -LISLLPMVVDLIGDRDIPIIAAG---------GIVD---ARGYVAALSLGAQGICLG 163 (300)
Q Consensus 119 -~~~ll~~v~~~~~~~~iPViaaG---------GI~~---g~~v~aal~lGAdgV~~G 163 (300)
...+..++.+..+..++|++.+. ...+ ..|++.++..|+|+|+++
T Consensus 360 ~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs 417 (581)
T PLN02623 360 EVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 417 (581)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEec
Confidence 11122333333322378998776 4333 358999999999999998
No 382
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=80.26 E-value=21 Score=32.72 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=65.8
Q ss_pred HHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEc-cCCCChHHHH---H
Q 022271 77 NENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAA-GGIVDARGYV---A 151 (300)
Q Consensus 77 ~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaa-GGI~~g~~v~---a 151 (300)
..+++.+++.| ++.|.+. |...+ ... +...--..++..+++.+++ ++||++. |+.++.+.+. .
T Consensus 24 ~~~i~~~i~~G~v~gi~~~-GstGE-~~~---------Lt~eEr~~~~~~~~~~~~~-~~pvi~gv~~~~t~~~i~la~~ 91 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVG-GSTGE-NFM---------LSTEEKKEIFRIAKDEAKD-QIALIAQVGSVNLKEAVELGKY 91 (290)
T ss_pred HHHHHHHHhCCCcCEEEEC-Ccccc-ccc---------CCHHHHHHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHH
Confidence 45677888888 8888775 32111 000 0000012345556666543 6899877 4455543333 3
Q ss_pred HHHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCC-CcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 152 ALSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMD-KTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 152 al~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~-~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
+-.+|||+|++-.++.... +...-..|++ +.++. +.. ..++. .|+..+..+....+.++.
T Consensus 92 a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~-v~~~~~~lp-v~lYn---~P~~tg~~l~~~~i~~L~ 153 (290)
T TIGR00683 92 ATELGYDCLSAVTPFYYKFSFPEIKHYYDT-IIAETGGLN-MIVYS---IPFLTGVNMGIEQFGELY 153 (290)
T ss_pred HHHhCCCEEEEeCCcCCCCCHHHHHHHHHH-HHhhCCCCC-EEEEe---CccccccCcCHHHHHHHh
Confidence 4569999999999877653 2222333333 33333 333 23453 245445566666666554
No 383
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=79.92 E-value=50 Score=30.42 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=40.9
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccC
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t 169 (300)
+.+|.++.+.+. ++|++.=||=+.+. ++.+++.+|..-|-++|-+..+
T Consensus 193 ~~~L~~I~~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a 241 (287)
T PF01116_consen 193 FDRLKEIREAVP--DIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRRA 241 (287)
T ss_dssp HHHHHHHHHHHH--TSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHHH
T ss_pred HHHHHHHHHhcC--CCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHHH
Confidence 668888888863 69999999999887 7899999999999999988765
No 384
>PRK01362 putative translaldolase; Provisional
Probab=79.12 E-value=44 Score=29.37 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=33.4
Q ss_pred hhchHHHHHHhhCCC-CCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 119 LISLLPMVVDLIGDR-DIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~-~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
-+.++.++.+.++.. .-+-|.+..+.+..++.++..+|||.+-++
T Consensus 140 g~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~ 185 (214)
T PRK01362 140 GMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIP 185 (214)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecC
Confidence 345666666655321 246778889999999999999999988774
No 385
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=78.77 E-value=28 Score=30.57 Aligned_cols=85 Identities=26% Similarity=0.295 Sum_probs=50.8
Q ss_pred HHHHHHHhCCc--eEEecCCCCCCHHHHHHHHHHHHhhcC-CcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcC------
Q 022271 26 ELVAAVANAGG--LGLLRAPDWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPH-NENIKAILSEKVAVLQVSW------ 95 (300)
Q Consensus 26 ~la~avs~aGg--lG~i~~~~~~~~~~l~~~i~~~r~~~~-~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~------ 95 (300)
+++..+.++|. +.+--+.|..+|+++.+.++.+|+..+ .|+++-.-..... ....-.++++|++.|..+.
T Consensus 141 ~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~ 220 (237)
T PF00682_consen 141 ELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGER 220 (237)
T ss_dssp HHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSST
T ss_pred HHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCC
Confidence 55666666664 332223356899999999999999876 6676644433222 4556777889999998764
Q ss_pred -CCC-cHHHHHHHHHCC
Q 022271 96 -GEY-SEELVLEAHSAG 110 (300)
Q Consensus 96 -G~~-~~~~v~~~~~~G 110 (300)
|.+ ...++..++..|
T Consensus 221 ~Gn~~le~lv~~L~~~g 237 (237)
T PF00682_consen 221 AGNAPLEELVAALERMG 237 (237)
T ss_dssp TSB-BHHHHHHHHHHT-
T ss_pred CCCccHHHHHHHHhhcC
Confidence 332 345555555443
No 386
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=78.50 E-value=52 Score=29.80 Aligned_cols=141 Identities=17% Similarity=0.128 Sum_probs=75.5
Q ss_pred HHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhcC--CcEEeeeecCCC--cHHHHHHHHHcCCcEEEEcC-
Q 022271 26 ELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFP--HNENIKAILSEKVAVLQVSW- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~~--~P~gvnl~~~~~--~~~~~~~~~e~g~~~i~~~~- 95 (300)
+++.-...+|.=|++.++. .++.++-++.++.+++... .|+-+++..... ..+.++.+.+.|++.|.+..
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 5566666778777764432 3678888888887777643 455454443221 13456666777887765531
Q ss_pred --CCC-cHHHHHHHH----HCCCeEeec------------------------------cChhchHHHHHHhhCCCCCcEE
Q 022271 96 --GEY-SEELVLEAH----SAGVKVVPQ------------------------------DGLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 96 --G~~-~~~~v~~~~----~~G~~v~~~------------------------------~~~~~ll~~v~~~~~~~~iPVi 138 (300)
..+ .+++++..+ ..+..++.. .+....+.++.+... .++.|+
T Consensus 105 ~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~~~~~~~~~~~~~~~-~~~~v~ 183 (284)
T cd00950 105 YYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEATGDLDRVSELIALCP-DDFAVL 183 (284)
T ss_pred ccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHhCC-CCeEEE
Confidence 111 123332222 134443321 112233334444331 134333
Q ss_pred EccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.| +...+..++.+|++|.+.|+..++.+.
T Consensus 184 -~G---~d~~~~~~~~~G~~G~~s~~~n~~p~~ 212 (284)
T cd00950 184 -SG---DDALTLPFLALGGVGVISVAANVAPKL 212 (284)
T ss_pred -eC---ChHhHHHHHHCCCCEEEehHHHhhHHH
Confidence 33 223466788999999999998766543
No 387
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=78.36 E-value=6.7 Score=37.75 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHhhcC-CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 45 WEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 45 ~~~~~~l~~~i~~~r~~~~-~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
+.+++.+.+.|+++|+.++ +|+++++.......+..+.+...++|+|.++.
T Consensus 195 ~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG 246 (392)
T cd02808 195 IYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDG 246 (392)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeC
Confidence 3578899999999999988 99999998764334444444455599998753
No 388
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=78.21 E-value=32 Score=30.86 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=43.6
Q ss_pred cHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHC---CCeEeecc---------ChhchHHHHHHhhCCCCCcEEEc
Q 022271 76 HNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSA---GVKVVPQD---------GLISLLPMVVDLIGDRDIPIIAA 140 (300)
Q Consensus 76 ~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~---G~~v~~~~---------~~~~ll~~v~~~~~~~~iPViaa 140 (300)
+...++.+.+.|-++|.-+.+... +..++.+++. .+.+.|.. -.+..++.+++.. ++||-.+
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f---~~~vG~S 178 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERF---GVPVGYS 178 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHS---TSEEEEE
T ss_pred CHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhc---CCCEEeC
Confidence 356777777777776654433322 2334444333 33344432 2466788888887 7888777
Q ss_pred cCCCChHHHHHHHHCCCcE
Q 022271 141 GGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 141 GGI~~g~~v~aal~lGAdg 159 (300)
+--..-.-..+|.++||.-
T Consensus 179 DHt~g~~~~~~AvalGA~v 197 (241)
T PF03102_consen 179 DHTDGIEAPIAAVALGARV 197 (241)
T ss_dssp E-SSSSHHHHHHHHTT-SE
T ss_pred CCCCCcHHHHHHHHcCCeE
Confidence 7666555566788899875
No 389
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.04 E-value=47 Score=29.12 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=84.0
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcCCCC-cHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEY-SEELV 103 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~G~~-~~~~v 103 (300)
++...+.+.+-+.++-. .++++..+..+.+.+..=+-+=|. ...+. .+.++.+.+.-++++. ..|.. ..+-+
T Consensus 7 ~~~~~l~~~~~iaV~r~---~~~~~a~~i~~al~~~Gi~~iEit--l~~~~~~~~I~~l~~~~p~~~I-GAGTVl~~~~a 80 (212)
T PRK05718 7 SIEEILRAGPVVPVIVI---NKLEDAVPLAKALVAGGLPVLEVT--LRTPAALEAIRLIAKEVPEALI-GAGTVLNPEQL 80 (212)
T ss_pred HHHHHHHHCCEEEEEEc---CCHHHHHHHHHHHHHcCCCEEEEe--cCCccHHHHHHHHHHHCCCCEE-EEeeccCHHHH
Confidence 44456677777777753 477776666666654311122222 22222 4456666655555443 33432 34567
Q ss_pred HHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHH
Q 022271 104 LEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 104 ~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
+...++|...+...+ +-+++.+..++.++|++ =|+.|+.++..++.+||+.|-+ +..++-..+.|-+.|.
T Consensus 81 ~~a~~aGA~FivsP~---~~~~vi~~a~~~~i~~i--PG~~TptEi~~a~~~Ga~~vKl-----FPa~~~gg~~~lk~l~ 150 (212)
T PRK05718 81 AQAIEAGAQFIVSPG---LTPPLLKAAQEGPIPLI--PGVSTPSELMLGMELGLRTFKF-----FPAEASGGVKMLKALA 150 (212)
T ss_pred HHHHHcCCCEEECCC---CCHHHHHHHHHcCCCEe--CCCCCHHHHHHHHHCCCCEEEE-----ccchhccCHHHHHHHh
Confidence 777788888876533 22244333322256664 4889999999999999999998 3333223566666666
Q ss_pred cC
Q 022271 184 EM 185 (300)
Q Consensus 184 ~a 185 (300)
..
T Consensus 151 ~p 152 (212)
T PRK05718 151 GP 152 (212)
T ss_pred cc
Confidence 53
No 390
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=77.81 E-value=30 Score=31.61 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=66.2
Q ss_pred HHHHHHHHHc-CCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHH----HH
Q 022271 77 NENIKAILSE-KVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VA 151 (300)
Q Consensus 77 ~~~~~~~~e~-g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v----~a 151 (300)
..+++.+++. |++.|.+. |.-. +... +...--..++..+++.+++ ++|||+.=|=.+-+++ ..
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~-GstG-E~~~---------Lt~~Er~~~~~~~~~~~~~-~~~viagv~~~~~~~ai~~a~~ 91 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVN-GSTG-EGFL---------LSVEERKQIAEIVAEAAKG-KVTLIAHVGSLNLKESQELAKH 91 (288)
T ss_pred HHHHHHHHhcCCCCEEEEC-cCCc-Cccc---------CCHHHHHHHHHHHHHHhCC-CCeEEeccCCCCHHHHHHHHHH
Confidence 5677888888 89888765 3211 1000 0000012445556666543 6899884443333332 34
Q ss_pred HHHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCC-CcceEEEecccCCCCCCCceecChhhHhhhc
Q 022271 152 ALSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMD-KTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 217 (300)
Q Consensus 152 al~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~-~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 217 (300)
+..+|||+|++-.+|.... +...-+ |=+.|.++. +..+ .++. .|...+..+...++.++.+
T Consensus 92 a~~~Gad~v~~~~P~y~~~~~~~i~~-~~~~v~~a~~~lpi-~iYn---~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 92 AEELGYDAISAITPFYYKFSFEEIKD-YYREIIAAAASLPM-IIYH---IPALTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHcCCCEEEEeCCCCCCCCHHHHHH-HHHHHHHhcCCCCE-EEEe---CccccCCCCCHHHHHHHhc
Confidence 5569999999999987652 222223 333344444 4332 3443 2444455666666666543
No 391
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=77.66 E-value=31 Score=31.52 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHH----HHH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VAA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v----~aa 152 (300)
..+++.+++.|++.+.+. |.-.+ ... +...--..++..+++.+++ ++||++.=|=.+-++. ..+
T Consensus 25 ~~~i~~l~~~Gv~gi~~~-Gs~GE-~~~---------ls~~Er~~~~~~~~~~~~~-~~~vi~gv~~~~~~~~i~~a~~a 92 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVV-GTTGE-SPT---------LTHEEHEELIRAVVEAVNG-RVPVIAGTGSNSTAEAIELTKFA 92 (292)
T ss_pred HHHHHHHHHcCCCEEEEC-CcCCc-ccc---------CCHHHHHHHHHHHHHHhCC-CCcEEeecCCchHHHHHHHHHHH
Confidence 567888888999998875 33111 000 0000012345556666543 5888754443333333 234
Q ss_pred HHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+|||+|++-.++.... +...-+ |=+.|.++.+..+ .++. .|+..++.+...+.+++.
T Consensus 93 ~~~G~d~v~~~pP~~~~~~~~~i~~-~~~~ia~~~~~pv-~lYn---~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 93 EKAGADGALVVTPYYNKPTQEGLYQ-HFKAIAEATDLPI-ILYN---VPGRTGVDILPETVARLA 152 (292)
T ss_pred HHcCCCEEEECCCcCCCCCHHHHHH-HHHHHHhcCCCCE-EEEE---CccccCCCCCHHHHHHHH
Confidence 558999999999887653 222223 3334444444332 2443 244445566666666654
No 392
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=77.58 E-value=57 Score=29.81 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=49.5
Q ss_pred ccCCccceecCCCCC--CCCc---HHHHHHHHh-CCceEEecCCC-----CCCHHHHHHHHHHHHhhcC--CcEEeeeec
Q 022271 6 MLGFEYGIVQAPLGP--DISG---PELVAAVAN-AGGLGLLRAPD-----WEAPDYLRDLIRKTRSLTE--RPFGVGVVL 72 (300)
Q Consensus 6 ~lg~~~Pii~apM~~--g~s~---~~la~avs~-aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~~--~P~gvnl~~ 72 (300)
+-|+ +|.+.-|+.- .+.. .+++.-... +|.=|++.++. .++.++-.+.++.+.+..+ .|+-+++-.
T Consensus 4 ~~Gv-~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 4 LKGV-YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred CCce-eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 3465 4555557741 1222 366666677 88777765532 3677877777887776543 355555433
Q ss_pred CCC--cHHHHHHHHHcCCcEEEE
Q 022271 73 AFP--HNENIKAILSEKVAVLQV 93 (300)
Q Consensus 73 ~~~--~~~~~~~~~e~g~~~i~~ 93 (300)
... ..+..+.+.+.|++.+.+
T Consensus 83 ~~t~~ai~~a~~a~~~Gad~v~v 105 (293)
T PRK04147 83 VNTAEAQELAKYATELGYDAISA 105 (293)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Confidence 221 134455666667776654
No 393
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=77.55 E-value=33 Score=35.84 Aligned_cols=79 Identities=23% Similarity=0.235 Sum_probs=52.1
Q ss_pred HHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCCC---CCcEEEccCCCChHHHHHHHH
Q 022271 82 AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGDR---DIPIIAAGGIVDARGYVAALS 154 (300)
Q Consensus 82 ~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~~---~iPViaaGGI~~g~~v~aal~ 154 (300)
.+...|.+++....-.+++++++...+.|..++.. .......+++.+.++.. +++|+++|.|. ..+...+..
T Consensus 605 ~l~~~GfeV~~~~~~~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~~-~~~~~~l~~ 683 (714)
T PRK09426 605 AFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGVIP-PQDYDFLYE 683 (714)
T ss_pred HHHhCCeeEecCCCCCCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCCCC-hhhHHHHHh
Confidence 33356788853321134688999999988877764 23456778888877542 46777776665 455677788
Q ss_pred CCCcEEE
Q 022271 155 LGAQGIC 161 (300)
Q Consensus 155 lGAdgV~ 161 (300)
+|+|++.
T Consensus 684 aGvD~~i 690 (714)
T PRK09426 684 AGVAAIF 690 (714)
T ss_pred CCCCEEE
Confidence 9998654
No 394
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=76.98 E-value=62 Score=29.89 Aligned_cols=142 Identities=22% Similarity=0.100 Sum_probs=78.9
Q ss_pred HHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhcC--CcEEeeeecCCCc--HHHHHHHHHcCCcEEEEcC-
Q 022271 26 ELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFPH--NENIKAILSEKVAVLQVSW- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~~--~P~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~- 95 (300)
+++.-..++|.=|++.+|. ..+.++-.+.++.+++..+ .|+-++.-.+... .+..+.+.+.|++.+....
T Consensus 29 ~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5555566788777775532 3678888888888888754 4555544433221 3455666667777665421
Q ss_pred --CCC---------------------------------cHHHHHHHHHCCCeEeec--cChhchHHHHHHhhCCCCCcEE
Q 022271 96 --GEY---------------------------------SEELVLEAHSAGVKVVPQ--DGLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 96 --G~~---------------------------------~~~~v~~~~~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPVi 138 (300)
-.| +.+.+.++.+..-.+... .+.+..+.+++..... .--.+
T Consensus 109 yY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd~~~~~~~~~~~~~-~~f~v 187 (299)
T COG0329 109 YYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDRLEEIIAALGD-RDFIV 187 (299)
T ss_pred CCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCcCHHHHHHHHHhcCc-cCeeE
Confidence 001 123333332221111111 2345555555554410 00133
Q ss_pred EccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
. .++-+.+...+.+|++|+..++..+.+.+
T Consensus 188 ~---~G~d~~~~~~~~~G~~G~is~~~N~~p~~ 217 (299)
T COG0329 188 L---SGDDELALPALLLGADGVISVTANVAPEL 217 (299)
T ss_pred E---eCchHHHHHHHhCCCCeEEecccccCHHH
Confidence 3 33555667788899999999999888765
No 395
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=76.24 E-value=15 Score=33.91 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH----HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~----aa 152 (300)
..+++.+++.|++.|.+. |... +... +...--..++..+++.+.+ ++|||+.-|- +-++.. .+
T Consensus 31 ~~li~~l~~~Gv~Gi~~~-GstG-E~~~---------Lt~eEr~~~~~~~~~~~~~-~~pvi~gv~~-~t~~~i~~~~~a 97 (303)
T PRK03620 31 REHLEWLAPYGAAALFAA-GGTG-EFFS---------LTPDEYSQVVRAAVETTAG-RVPVIAGAGG-GTAQAIEYAQAA 97 (303)
T ss_pred HHHHHHHHHcCCCEEEEC-cCCc-Cccc---------CCHHHHHHHHHHHHHHhCC-CCcEEEecCC-CHHHHHHHHHHH
Confidence 567888888999998775 3311 1000 0000012455556666543 6999986663 444433 34
Q ss_pred HHCCCcEEEeccccccC
Q 022271 153 LSLGAQGICLGTRFVAS 169 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t 169 (300)
-.+|||+|++-.+|...
T Consensus 98 ~~~Gadav~~~pP~y~~ 114 (303)
T PRK03620 98 ERAGADGILLLPPYLTE 114 (303)
T ss_pred HHhCCCEEEECCCCCCC
Confidence 45899999999998764
No 396
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=75.92 E-value=59 Score=29.10 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCC---cHHHHHHHHHc-CCcE-EEE--cCCCCcH---HHHHHHHHCCCeEee
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP---HNENIKAILSE-KVAV-LQV--SWGEYSE---ELVLEAHSAGVKVVP 115 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~---~~~~~~~~~e~-g~~~-i~~--~~G~~~~---~~v~~~~~~G~~v~~ 115 (300)
.+++++.+.+++.++. +.-.+++-.... +.+.++.+.+. +.++ +.+ +.+-..+ ++.+.+.+.|+.++.
T Consensus 84 ~~~~~~~~~~~~~~~~--G~~~~KiKvg~~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE 161 (265)
T cd03315 84 GEPAEVAEEARRALEA--GFRTFKLKVGRDPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVE 161 (265)
T ss_pred CCHHHHHHHHHHHHHC--CCCEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 3677777676666543 222344433222 13445555553 3332 222 2222223 344556677887776
Q ss_pred cc---ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEecccccc
Q 022271 116 QD---GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVA 168 (300)
Q Consensus 116 ~~---~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~ 168 (300)
+. ..+..+.++++.+ ++||.+.+.+.+..++..++..+ +|.|++--..+.
T Consensus 162 eP~~~~d~~~~~~l~~~~---~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~G 215 (265)
T cd03315 162 QPLPADDLEGRAALARAT---DTPIMADESAFTPHDAFRELALGAADAVNIKTAKTG 215 (265)
T ss_pred CCCCcccHHHHHHHHhhC---CCCEEECCCCCCHHHHHHHHHhCCCCEEEEeccccc
Confidence 52 1355666777665 89999999999999999998764 788888644443
No 397
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=75.88 E-value=71 Score=30.06 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=57.8
Q ss_pred CCCcHHHHHHHHhCCceEEecCC--------CC-----CCHHHHHHHHHHHHhhcCCcEEe-eeecC-C--CcHH----H
Q 022271 21 DISGPELVAAVANAGGLGLLRAP--------DW-----EAPDYLRDLIRKTRSLTERPFGV-GVVLA-F--PHNE----N 79 (300)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~--------~~-----~~~~~l~~~i~~~r~~~~~P~gv-nl~~~-~--~~~~----~ 79 (300)
..-+...|..+.++|. -.|..+ || .+.|++....+.+++-.+.||-| .+... + ..++ .
T Consensus 41 TAyD~~sA~i~d~aGv-D~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA 119 (332)
T PLN02424 41 TAYDYPSAVHVDSAGI-DVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESA 119 (332)
T ss_pred ecCCHHHHHHHHHcCC-CEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHH
Confidence 3456777777788874 333211 11 46677888888888777778766 44322 1 1122 2
Q ss_pred HHHHHHcCCcEEEEcCC-CCcHHHHHHHHHCCCeEe
Q 022271 80 IKAILSEKVAVLQVSWG-EYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 80 ~~~~~e~g~~~i~~~~G-~~~~~~v~~~~~~G~~v~ 114 (300)
.+.+.+.|++.|-+-.| ....+.|+.+.+.|+.|+
T Consensus 120 ~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~ 155 (332)
T PLN02424 120 VRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVM 155 (332)
T ss_pred HHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEE
Confidence 34446788999988766 223466777778888887
No 398
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=75.81 E-value=22 Score=31.55 Aligned_cols=82 Identities=11% Similarity=0.214 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCC--CcHHHHHHHHHcCCcEEEEcCCCC----cHHHHHHHHHCCCeEeeccCh
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAF--PHNENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVPQDGL 119 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~--~~~~~~~~~~e~g~~~i~~~~G~~----~~~~v~~~~~~G~~v~~~~~~ 119 (300)
.+|+.+.+.++.+|+ .+.|+.|++-... ...+.++.+.+.|++.+..+.+.+ ..+.+.+++ .++.++.. |.
T Consensus 123 ~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgn-Gg 199 (233)
T cd02911 123 KDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGN-NS 199 (233)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEE-CC
Confidence 469999999999998 5899999997654 345677888899999987765432 134555554 46777763 44
Q ss_pred hchHHHHHHhh
Q 022271 120 ISLLPMVVDLI 130 (300)
Q Consensus 120 ~~ll~~v~~~~ 130 (300)
+.-..++.+.+
T Consensus 200 I~s~eda~~~l 210 (233)
T cd02911 200 VTTIESAKEMF 210 (233)
T ss_pred cCCHHHHHHHH
Confidence 44444444443
No 399
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=75.41 E-value=32 Score=31.21 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH----HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~----aa 152 (300)
..+++.+++.|++.+.+. |.-. +... +...--..++..+++.+++ ++||++.=|=.+-++.. .+
T Consensus 24 ~~~i~~l~~~Gv~gl~v~-GstG-E~~~---------lt~~Er~~l~~~~~~~~~~-~~~vi~gv~~~~~~~~~~~a~~a 91 (284)
T cd00950 24 ERLIEFQIENGTDGLVVC-GTTG-ESPT---------LSDEEHEAVIEAVVEAVNG-RVPVIAGTGSNNTAEAIELTKRA 91 (284)
T ss_pred HHHHHHHHHcCCCEEEEC-CCCc-chhh---------CCHHHHHHHHHHHHHHhCC-CCcEEeccCCccHHHHHHHHHHH
Confidence 567888888999988776 3311 1000 0000012345555665542 57886554433444433 44
Q ss_pred HHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+|||+|++..++.... +...-+.| +.|.++.+..+ .++. .|+..+..+.-.+.+++.
T Consensus 92 ~~~G~d~v~~~~P~~~~~~~~~l~~~~-~~ia~~~~~pi-~lYn---~P~~~g~~ls~~~~~~L~ 151 (284)
T cd00950 92 EKAGADAALVVTPYYNKPSQEGLYAHF-KAIAEATDLPV-ILYN---VPGRTGVNIEPETVLRLA 151 (284)
T ss_pred HHcCCCEEEEcccccCCCCHHHHHHHH-HHHHhcCCCCE-EEEE---ChhHhCCCCCHHHHHHHh
Confidence 569999999999877642 22222333 33444433332 2443 244445556656666554
No 400
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=75.08 E-value=5.7 Score=35.87 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=50.5
Q ss_pred cHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
|.++.....+.|+..+.. .|.+..|+.+++++ ++||+.===|-|+.++..|..+|||+|.+=.++|
T Consensus 68 p~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v---~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L 140 (254)
T COG0134 68 PVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAV---DLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 140 (254)
T ss_pred HHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhc---CCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhc
Confidence 344444445555444322 46888999999998 8999999999999999999999999998855544
No 401
>PRK06256 biotin synthase; Validated
Probab=74.84 E-value=72 Score=29.63 Aligned_cols=71 Identities=13% Similarity=0.169 Sum_probs=38.4
Q ss_pred CCcHHHHHHHH---hCCc--eEEecCCCCCCH---HHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEE
Q 022271 22 ISGPELVAAVA---NAGG--LGLLRAPDWEAP---DYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (300)
Q Consensus 22 ~s~~~la~avs---~aGg--lG~i~~~~~~~~---~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~ 93 (300)
.+..+++..+. +.|. +.+...+...+. +.+.+.++.+++..+..+.++ ......+.++.+.++|++.+.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~--~g~l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICAC--LGLLTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEec--CCcCCHHHHHHHHHhCCCEEec
Confidence 45555555443 4565 333333221122 356666777766433223332 2224578888899999888765
Q ss_pred c
Q 022271 94 S 94 (300)
Q Consensus 94 ~ 94 (300)
+
T Consensus 169 ~ 169 (336)
T PRK06256 169 N 169 (336)
T ss_pred C
Confidence 3
No 402
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=74.76 E-value=47 Score=29.76 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeee-e-----cCCCcHHHHHHHHHcCCcEEEEcCCCC---c---HHHHHHHHHCCCeE
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGV-V-----LAFPHNENIKAILSEKVAVLQVSWGEY---S---EELVLEAHSAGVKV 113 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl-~-----~~~~~~~~~~~~~e~g~~~i~~~~G~~---~---~~~v~~~~~~G~~v 113 (300)
++.+.+++.|+-.|+. +-++..+- + .....+++++.|.+.|.+.|.+|-|.. . ..+|+.+++.|.++
T Consensus 38 ~~~~~l~eki~la~~~-~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v 116 (237)
T TIGR03849 38 IDRDIVKEKIEMYKDY-GIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMV 116 (237)
T ss_pred ccHHHHHHHHHHHHHc-CCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeE
Confidence 4567888888888764 11211110 0 011236778899999999999987742 2 35678888899888
Q ss_pred eeccChhchHHHHHHhhCCCCCcEEEccCCCCh----HHHHHHHHCCCcEEEeccc
Q 022271 114 VPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA----RGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 114 ~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g----~~v~aal~lGAdgV~~GT~ 165 (300)
..-.|.-.. +. +. .-++ +.+.+.|.+||+.|++=.|
T Consensus 117 ~~EvG~K~~-----~~----~~-------~~~~~~~i~~~~~~LeAGA~~ViiEar 156 (237)
T TIGR03849 117 LSEVGKKSP-----EK----DS-------ELTPDDRIKLINKDLEAGADYVIIEGR 156 (237)
T ss_pred eccccccCC-----cc----cc-------cCCHHHHHHHHHHHHHCCCcEEEEeeh
Confidence 865332110 00 00 0111 2345669999999999554
No 403
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=74.58 E-value=70 Score=30.11 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCc----HHHHHHHHHCCCe-----Eeecc---------ChhchHHHHHHhhCCCCCcEE
Q 022271 77 NENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVK-----VVPQD---------GLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~----~~~v~~~~~~G~~-----v~~~~---------~~~~ll~~v~~~~~~~~iPVi 138 (300)
...++.+.+.|-++|... |... ...++.+++.|.. +++.. -.+..++.+++.. ++||.
T Consensus 123 ~pLL~~~A~~gkPvilSt-Gmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f---~~pVG 198 (329)
T TIGR03569 123 APLLKKIARFGKPVILST-GMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF---DLPVG 198 (329)
T ss_pred HHHHHHHHhcCCcEEEEC-CCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh---CCCEE
Confidence 445555555555555433 3322 2344455666643 44432 2456677777776 79999
Q ss_pred EccCCCChHHHHHHHHCCCcEEEeccccccCccc--------CCCHHHHHHHHcC
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVASEES--------YAHPEYKRKLVEM 185 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es--------~~~~~~k~~i~~a 185 (300)
.++--..-.-..+|.++||+ ++=..|.....- --++.+++.+.+.
T Consensus 199 ~SdHt~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~i 251 (329)
T TIGR03569 199 YSDHTLGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGI 251 (329)
T ss_pred ECCCCccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHH
Confidence 87665554555678889999 443444433222 2345666666553
No 404
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=74.11 E-value=30 Score=29.77 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=28.4
Q ss_pred hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
++..+.+..+..+++||+. ||-|.++...+..+|.+++|
T Consensus 191 ~l~~l~~~~~~~~~~via~-gVe~~~~~~~l~~~Gi~~~Q 229 (241)
T smart00052 191 IVQSIIELAQKLGLQVVAE-GVETPEQLDLLRSLGCDYGQ 229 (241)
T ss_pred HHHHHHHHHHHCCCeEEEe-cCCCHHHHHHHHHcCCCEEe
Confidence 3444444433336776655 89999999999999999887
No 405
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=74.07 E-value=33 Score=31.08 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=54.9
Q ss_pred EEeeeecCCCc----HHHHHHHHHcCCcEEEEcC--CCC--cHHHHHHHH----HCCCeEeeccChhchHHHHHHhhCCC
Q 022271 66 FGVGVVLAFPH----NENIKAILSEKVAVLQVSW--GEY--SEELVLEAH----SAGVKVVPQDGLISLLPMVVDLIGDR 133 (300)
Q Consensus 66 ~gvnl~~~~~~----~~~~~~~~e~g~~~i~~~~--G~~--~~~~v~~~~----~~G~~v~~~~~~~~ll~~v~~~~~~~ 133 (300)
+..=++..+|+ .+.++.+.+.|+++|.+.+ -.| ..++|++.+ ++|..+ ...+.++.++++.. .
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~---~~~~~~~~~~r~~~--~ 88 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTL---ADVFELVREIREKD--P 88 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhcC--C
Confidence 44444445554 3456777889999999843 122 135566543 345332 23577777777321 2
Q ss_pred CCcEEEccCCCC----hHH--HHHHHHCCCcEEEec
Q 022271 134 DIPIIAAGGIVD----ARG--YVAALSLGAQGICLG 163 (300)
Q Consensus 134 ~iPViaaGGI~~----g~~--v~aal~lGAdgV~~G 163 (300)
++|++.-+=... |-+ +..+...|+||+.+-
T Consensus 89 ~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip 124 (258)
T PRK13111 89 TIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP 124 (258)
T ss_pred CCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC
Confidence 789876652221 222 566677999999993
No 406
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=73.97 E-value=36 Score=31.01 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHH----HHH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VAA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v----~aa 152 (300)
..+++.+++.|++.+.+. |.-. +... +...--..++..+++.+++ ++||++.=|=.+-++. ..+
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~-GstG-E~~~---------Ls~~Er~~~~~~~~~~~~~-~~~vi~gv~~~s~~~~i~~a~~a 89 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVV-GTTG-ESPT---------LSHEEHKKVIEFVVDLVNG-RVPVIAGTGSNATEEAISLTKFA 89 (285)
T ss_pred HHHHHHHHHcCCCEEEEC-ccCc-cccc---------CCHHHHHHHHHHHHHHhCC-CCeEEEeCCCccHHHHHHHHHHH
Confidence 567788888899988764 3211 1000 0000012345556666543 6888866544344442 344
Q ss_pred HHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+|||+|++-.++.... +...-. |=+.|.++.+..+ .++. .|...+..+...+.+++.
T Consensus 90 ~~~Gad~v~v~pP~y~~~~~~~i~~-~~~~i~~~~~~pi-~lYn---~P~~tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 90 EDVGADGFLVVTPYYNKPTQEGLYQ-HFKAIAEEVDLPI-ILYN---VPSRTGVSLYPETVKRLA 149 (285)
T ss_pred HHcCCCEEEEcCCcCCCCCHHHHHH-HHHHHHhcCCCCE-EEEE---CcHHhcCCCCHHHHHHHH
Confidence 568999999999988753 211222 3333444444432 3443 133334556656666554
No 407
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=73.79 E-value=56 Score=29.38 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=54.1
Q ss_pred HHHHHHHhCCceEE--ecCCCCCCHHHHHHHHHHHHhhcCC-cEEeeeecCCCc-HHHHHHHHHcCCcEEEEcC------
Q 022271 26 ELVAAVANAGGLGL--LRAPDWEAPDYLRDLIRKTRSLTER-PFGVGVVLAFPH-NENIKAILSEKVAVLQVSW------ 95 (300)
Q Consensus 26 ~la~avs~aGglG~--i~~~~~~~~~~l~~~i~~~r~~~~~-P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~------ 95 (300)
+++..+.++|.=-+ --+.|..+|+++.+.++++|+..+. |+++-.-..... ....-.++++|++.|..+.
T Consensus 145 ~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~~ 224 (263)
T cd07943 145 EQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGAG 224 (263)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccCC
Confidence 45566666664222 1122457999999999999988776 776643322221 3445566788999997754
Q ss_pred -CCCc-HHHHHHHHHCCCe
Q 022271 96 -GEYS-EELVLEAHSAGVK 112 (300)
Q Consensus 96 -G~~~-~~~v~~~~~~G~~ 112 (300)
|+++ ..++..++..|..
T Consensus 225 aGN~~~E~lv~~L~~~g~~ 243 (263)
T cd07943 225 AGNTPLEVLVAVLERMGIE 243 (263)
T ss_pred cCCccHHHHHHHHHhcCCC
Confidence 3333 4556666666554
No 408
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=73.48 E-value=49 Score=32.16 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=54.4
Q ss_pred cccccCC-ccceecC---CCCCCCCcHHHHHHHH--hCCceEEecC------CCCCCH----HHHHHHHHHHHhhcCC--
Q 022271 3 WRGMLGF-EYGIVQA---PLGPDISGPELVAAVA--NAGGLGLLRA------PDWEAP----DYLRDLIRKTRSLTER-- 64 (300)
Q Consensus 3 ~~~~lg~-~~Pii~a---pM~~g~s~~~la~avs--~aGglG~i~~------~~~~~~----~~l~~~i~~~r~~~~~-- 64 (300)
+.+++|+ +-|++.. |-- |.|..+++..+- -.||+.++=. ..+... ..+.+.+++..+.|++
T Consensus 135 ~R~~lgv~~RPL~gtiiKP~~-Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~ 213 (412)
T TIGR03326 135 VREFLGIKDRPLLGTVPKPKV-GLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERK 213 (412)
T ss_pred HHHHhCCCCCceEEeeccccc-cCChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3456664 5687765 522 578777777654 3577888721 112111 2334445555555654
Q ss_pred cEEeeeecCCC-cHHHHHHHHHcCCcEEEEcC
Q 022271 65 PFGVGVVLAFP-HNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 65 P~gvnl~~~~~-~~~~~~~~~e~g~~~i~~~~ 95 (300)
-|.+|+..... -.+..+.+.+.|..++.++.
T Consensus 214 ~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~ 245 (412)
T TIGR03326 214 EYLANITAPVREMERRAELVADLGGQYVMVDV 245 (412)
T ss_pred eEEEEecCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 47889886421 14667888888988887654
No 409
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=73.39 E-value=14 Score=34.01 Aligned_cols=60 Identities=25% Similarity=0.334 Sum_probs=43.6
Q ss_pred HHHHHHHHCCCeEeec---cC------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 101 ELVLEAHSAGVKVVPQ---DG------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~---~~------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
+.++.+.+.|...+.. .+ ....+.++++.+ ++||++- ++.+.+++..+...|+|+|.+..
T Consensus 133 ~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~---~~pvivK-~v~s~~~a~~a~~~G~d~I~v~~ 201 (299)
T cd02809 133 DLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQW---KGPLILK-GILTPEDALRAVDAGADGIVVSN 201 (299)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhc---CCCEEEe-ecCCHHHHHHHHHCCCCEEEEcC
Confidence 3555556677765542 11 145777777776 7899886 57999999999999999999853
No 410
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=73.33 E-value=7 Score=36.83 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=53.6
Q ss_pred cHHHHHHHHHCCCeEeec-------cChhchHHHHHHh-hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDL-IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~-~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++.+...+.|+..+.. .|.+..|.+++++ + ++||+-===|-|..++..+-.+|||+|.+=-+.|-
T Consensus 141 p~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v---~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~ 215 (338)
T PLN02460 141 PVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGV---KCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLP 215 (338)
T ss_pred HHHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCC---CCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCC
Confidence 456666666777665533 4678899999997 7 79999999999999999999999999998655554
No 411
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=73.30 E-value=17 Score=34.44 Aligned_cols=86 Identities=23% Similarity=0.389 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHH----C--CCeEeec-----------------c------C------hhc
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHS----A--GVKVVPQ-----------------D------G------LIS 121 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~----~--G~~v~~~-----------------~------~------~~~ 121 (300)
.+.++..++.++++|.+||=. ..+.+..+++ . .+.++.. + | .+.
T Consensus 179 ~~di~fa~~~~vD~IalSFVr-sa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgimiaRGDLg~e~~~e 257 (348)
T PF00224_consen 179 KEDIKFAVENGVDFIALSFVR-SAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEASDGIMIARGDLGVEIPFE 257 (348)
T ss_dssp HHHHHHHHHTT-SEEEETTE--SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEEEEEHHHHHHHSTGG
T ss_pred HHHHHHHHHcCCCEEEecCCC-chHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhhcCeEEEecCCcceeeeHH
Confidence 567888899999999999843 3344544442 2 3556543 0 1 112
Q ss_pred hHHH----HHHhhCCCCCcEEEccCCCC------------hHHHHHHHHCCCcEEEec
Q 022271 122 LLPM----VVDLIGDRDIPIIAAGGIVD------------ARGYVAALSLGAQGICLG 163 (300)
Q Consensus 122 ll~~----v~~~~~~~~iPViaaGGI~~------------g~~v~aal~lGAdgV~~G 163 (300)
-+|. +.......+.|||.|.-+-+ -.|++.|+.-|||+|++.
T Consensus 258 ~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs 315 (348)
T PF00224_consen 258 KVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLS 315 (348)
T ss_dssp GHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEec
Confidence 2222 22211112689999988722 346778888899999985
No 412
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=73.19 E-value=25 Score=30.70 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCC--cHHHHHHHHH-cCCcEEEEc--CCC--CcHHHHHHHHHCCCeEeec------
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFP--HNENIKAILS-EKVAVLQVS--WGE--YSEELVLEAHSAGVKVVPQ------ 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~--~~~~~~~~~e-~g~~~i~~~--~G~--~~~~~v~~~~~~G~~v~~~------ 116 (300)
.+.+.|+.+|++.-.-|-++...... +.+.++.+++ .+.--+.|+ |.. .+.+.++.+.+.|+.-+-+
T Consensus 73 ~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~ 152 (201)
T PF03932_consen 73 IMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPT 152 (201)
T ss_dssp HHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSS
T ss_pred HHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCC
Confidence 34444555555432334444444332 2444444443 233223332 111 1345555555556544322
Q ss_pred -cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEe
Q 022271 117 -DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICL 162 (300)
Q Consensus 117 -~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~ 162 (300)
.--+..|.++.+..+. ++-|++.|||... .+...+. .|+..+=.
T Consensus 153 a~~g~~~L~~lv~~a~~-~i~Im~GgGv~~~-nv~~l~~~tg~~~~H~ 198 (201)
T PF03932_consen 153 ALEGIENLKELVEQAKG-RIEIMPGGGVRAE-NVPELVEETGVREIHG 198 (201)
T ss_dssp TTTCHHHHHHHHHHHTT-SSEEEEESS--TT-THHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHHHHHcCC-CcEEEecCCCCHH-HHHHHHHhhCCeEEee
Confidence 1123445555554432 6889999999654 5555555 67765543
No 413
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=73.12 E-value=46 Score=30.33 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=59.1
Q ss_pred cccCCccceecCCCCCCCCcHHHHHHHHhC-CceEEecCC---CCCC--HHHHHHHHHHHHhhcCCcEEeeeecCCCcHH
Q 022271 5 GMLGFEYGIVQAPLGPDISGPELVAAVANA-GGLGLLRAP---DWEA--PDYLRDLIRKTRSLTERPFGVGVVLAFPHNE 78 (300)
Q Consensus 5 ~~lg~~~Pii~apM~~g~s~~~la~avs~a-GglG~i~~~---~~~~--~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~ 78 (300)
+..|+++=.+.+|- .++..|-.-++.+ |.+-.++.. |..+ .+.+.+.++++|+.++.|+.+++=.. ..+
T Consensus 144 ~~~gi~~I~lvaPt---t~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs--~~e 218 (265)
T COG0159 144 EKHGIDPIFLVAPT---TPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGIS--SPE 218 (265)
T ss_pred HHcCCcEEEEeCCC---CCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcC--CHH
Confidence 34566543444442 3445555554555 444444321 1112 23489999999999999999887653 578
Q ss_pred HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHC
Q 022271 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSA 109 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~ 109 (300)
+++.+.+. ++.|.+ |+ .+++.+++.
T Consensus 219 ~~~~v~~~-ADGVIV--GS---AiV~~i~~~ 243 (265)
T COG0159 219 QAAQVAEA-ADGVIV--GS---AIVKIIEEG 243 (265)
T ss_pred HHHHHHHh-CCeEEE--cH---HHHHHHHhc
Confidence 89999998 999988 43 466666543
No 414
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=73.02 E-value=67 Score=28.43 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=31.6
Q ss_pred hchHHHHHHhhCC-CCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 120 ISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 120 ~~ll~~v~~~~~~-~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
..++.++.+.++. ..-+-|.+-.+.+..++.+++.+|||.+-+.
T Consensus 145 ~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp 189 (222)
T PRK12656 145 NAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQAVTAG 189 (222)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCEEecC
Confidence 3456565555421 1235677778999999999999999988774
No 415
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=72.51 E-value=67 Score=28.20 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=32.5
Q ss_pred hhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 119 LISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 119 ~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
-+.++.++.+.++. .+.. |.+..+.+.+++.++..+|||.|-+.
T Consensus 140 g~~~v~~~~~~~~~~~~~tk-IlaAS~r~~~~v~~~~~~G~d~vTip 185 (213)
T TIGR00875 140 GMKLIEEVKTIFENHAPDTE-VIAASVRHPRHVLEAALIGADIATMP 185 (213)
T ss_pred HHHHHHHHHHHHHHcCCCCE-EEEeccCCHHHHHHHHHcCCCEEEcC
Confidence 35566666665531 2455 66778999999999999999998774
No 416
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=72.23 E-value=70 Score=28.27 Aligned_cols=114 Identities=20% Similarity=0.172 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec---------c
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ---------D 117 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~---------~ 117 (300)
+.+++.++-++++++.+. +.|++.....-.+.++.+.++|+++-.+..=++...++. . .+|...+.- .
T Consensus 64 d~e~mi~ea~~l~~~~~n-i~IKIP~T~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~A-a-~aGa~yIspyvgR~~~~g~ 140 (220)
T PRK12653 64 TAEGMVNDARKLRSIIAD-IVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLS-A-LAGAEYVAPYVNRIDAQGG 140 (220)
T ss_pred CHHHHHHHHHHHHHhCCC-EEEEeCCCHHHHHHHHHHHHcCCCeeEEEecCHHHHHHH-H-hcCCcEEEeecChHhhcCC
Confidence 444444444444443322 445554322223445555566666544322122222221 1 355554432 1
Q ss_pred ChhchHHHHHHhhCC-CCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 118 GLISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~-~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.-+.++.++.+.++. ..-+-|.+..+.+.+++.+++.+|||.+-+.
T Consensus 141 dg~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip 187 (220)
T PRK12653 141 SGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLP 187 (220)
T ss_pred ChHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECC
Confidence 134456666665531 1245677778999999999999999988763
No 417
>PRK15452 putative protease; Provisional
Probab=71.93 E-value=40 Score=33.08 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=24.9
Q ss_pred CCcEEEcc--CCCChHHHHHHHHCCCcEEEec
Q 022271 134 DIPIIAAG--GIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 134 ~iPViaaG--GI~~g~~v~aal~lGAdgV~~G 163 (300)
++||.++- .|.+...+..+..+|++.|.+.
T Consensus 110 ~l~ih~stqlni~N~~a~~f~~~lG~~rvvLS 141 (443)
T PRK15452 110 EMPIHLSVQANAVNWATVKFWQQMGLTRVILS 141 (443)
T ss_pred CCeEEEEecccCCCHHHHHHHHHCCCcEEEEC
Confidence 67888876 5789999999999999888775
No 418
>PRK14565 triosephosphate isomerase; Provisional
Probab=71.79 E-value=59 Score=29.12 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=25.1
Q ss_pred CCcEEEccCCCCh--HHHHHHHHCCCcEEEeccccc
Q 022271 134 DIPIIAAGGIVDA--RGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 134 ~iPViaaGGI~~g--~~v~aal~lGAdgV~~GT~fl 167 (300)
+++|+-.|+|... +++.+ ..+.||+.+|++-+
T Consensus 189 ~~~IlYGGSV~~~N~~~l~~--~~~iDG~LvG~asl 222 (237)
T PRK14565 189 KSHIIYGGSVNQENIRDLKS--INQLSGVLVGSASL 222 (237)
T ss_pred CceEEEcCccCHhhHHHHhc--CCCCCEEEEechhh
Confidence 6899999888766 44443 45999999999877
No 419
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=71.64 E-value=83 Score=28.93 Aligned_cols=36 Identities=6% Similarity=0.029 Sum_probs=24.9
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++||++..+-...-.+...-.+|..-|..|...+..
T Consensus 211 ~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 211 RTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred CCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 468876543222235677788999999999877655
No 420
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=71.52 E-value=60 Score=28.59 Aligned_cols=114 Identities=11% Similarity=0.107 Sum_probs=63.5
Q ss_pred HHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHH----CCCe----Eeecc-------
Q 022271 54 LIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHS----AGVK----VVPQD------- 117 (300)
Q Consensus 54 ~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~----~G~~----v~~~~------- 117 (300)
.++++++.. ++++-..|-.++-.....+.+.+.|++.+.+.... ..+.++.+.+ .|.. ++...
T Consensus 46 ~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~~-g~~~i~~a~~~a~~~~~~~~~~llgV~t~~~~~~ 124 (218)
T PRK13305 46 AVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAA-PLATVEKGHAVAQRCGGEIQIELFGNWTLDDARD 124 (218)
T ss_pred HHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecCC-CHHHHHHHHHHHHhcCCcccceEEEecCcchHHH
Confidence 366666653 56777777766654445556778899877665433 3455555443 2432 22210
Q ss_pred --------------------Ch---hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 118 --------------------GL---ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 118 --------------------~~---~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
|. -.-++.+++... .+.++..+|||.-. +....-..+.|.+++|++...++
T Consensus 125 l~~~g~~~~v~h~a~~a~~~G~v~s~~e~~~ir~~~~-~~~~i~VtpGIr~~-~~~~~dq~rvd~iVVGR~It~A~ 198 (218)
T PRK13305 125 WHRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSD-IGLELSITGGITPA-DLPLFKDIRVKAFIAGRALAGAA 198 (218)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC-CCCcEEEeCCcCcc-ccccccccCCCEEEECCcccCCC
Confidence 00 012344444432 24568888888632 22334456778888888877664
No 421
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=71.17 E-value=41 Score=27.10 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=55.2
Q ss_pred cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC---cHHHHHHHHHcCC-cEEEEcCCCCc
Q 022271 24 GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP---HNENIKAILSEKV-AVLQVSWGEYS 99 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~---~~~~~~~~~e~g~-~~i~~~~G~~~ 99 (300)
...+++..-+++|+=++-.+.+.+++++- +.+++.--.-+++.-..... ..+.++.+.+.+. ++..+..|.+|
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~~s~e~~v---~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLFQTPEEIA---RQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCHHHHH---HHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 35788888889999999887667787554 44443321224432222111 1345666666666 44455556667
Q ss_pred HHHHHHHHHCCCeEeec
Q 022271 100 EELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~ 116 (300)
++-.+.+++.|+.-+..
T Consensus 95 ~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 95 PQDFDELKEMGVAEIFG 111 (132)
T ss_pred hHhHHHHHHCCCCEEEC
Confidence 77788899999876544
No 422
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=71.13 E-value=41 Score=31.50 Aligned_cols=62 Identities=13% Similarity=0.061 Sum_probs=43.6
Q ss_pred HHHHHCCCeEeec---cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEecccccc
Q 022271 104 LEAHSAGVKVVPQ---DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVA 168 (300)
Q Consensus 104 ~~~~~~G~~v~~~---~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~ 168 (300)
+.+.+.++..+.+ ...+..+.++++.. ++||++...+.+.+++..++..| +|.|++-...+.
T Consensus 210 ~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~---~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~G 275 (357)
T cd03316 210 RALEEYDLFWFEEPVPPDDLEGLARLRQAT---SVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVG 275 (357)
T ss_pred HHhCccCCCeEcCCCCccCHHHHHHHHHhC---CCCEEeccccccHHHHHHHHHhCCCCEEecCccccC
Confidence 3344456655543 12355666777765 79999999999999999999865 788888654443
No 423
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=70.82 E-value=34 Score=33.00 Aligned_cols=91 Identities=14% Similarity=0.227 Sum_probs=55.4
Q ss_pred ccccCC-ccceecC---CCCCCCCcHHHHHHHHh--CCceEEecC------CCCCCH----HHHHHHHHHHHhhcCC--c
Q 022271 4 RGMLGF-EYGIVQA---PLGPDISGPELVAAVAN--AGGLGLLRA------PDWEAP----DYLRDLIRKTRSLTER--P 65 (300)
Q Consensus 4 ~~~lg~-~~Pii~a---pM~~g~s~~~la~avs~--aGglG~i~~------~~~~~~----~~l~~~i~~~r~~~~~--P 65 (300)
.+++|+ +-|++.. |-- |.|..+++..+-+ .||+.++=. ..+... ..+.+.+++..+.|++ -
T Consensus 116 R~~lgv~~RPL~~tiiKP~~-Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ 194 (391)
T cd08209 116 RQRLGVHDRPLLMSIFKGVL-GLDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTL 194 (391)
T ss_pred HHHhCCCCCceEEeeecccc-CCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcce
Confidence 456664 5677764 532 6788777776643 577887621 112111 2344455555555654 4
Q ss_pred EEeeeecCCC-cHHHHHHHHHcCCcEEEEcC
Q 022271 66 FGVGVVLAFP-HNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 66 ~gvnl~~~~~-~~~~~~~~~e~g~~~i~~~~ 95 (300)
|.+|+..... -.+..+.+.++|.+++.++.
T Consensus 195 ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~ 225 (391)
T cd08209 195 YAVNLTGPVFTLKEKARRLVEAGANALLFNV 225 (391)
T ss_pred EEEEcCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 8899986421 14678888999999887764
No 424
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=70.81 E-value=31 Score=31.15 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCcEEEEcC--CCC--cHHHHHHHH----HCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCCh--
Q 022271 77 NENIKAILSEKVAVLQVSW--GEY--SEELVLEAH----SAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-- 146 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~--G~~--~~~~v~~~~----~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g-- 146 (300)
.+.++.+.+.|+++|.+.. -.| ..++|++.. ++|..+ ...+.++.++++.. .++|++ -=+..++
T Consensus 27 ~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~---~~~~~~v~~ir~~~--~~~plv-~m~Y~Npi~ 100 (256)
T TIGR00262 27 LEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTP---EKCFELLKKVRQKH--PNIPIG-LLTYYNLIF 100 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhcC--CCCCEE-EEEeccHHh
Confidence 4557778889999999843 122 134565543 345433 23567777777541 278987 5556666
Q ss_pred ----HH-HHHHHHCCCcEEEe
Q 022271 147 ----RG-YVAALSLGAQGICL 162 (300)
Q Consensus 147 ----~~-v~aal~lGAdgV~~ 162 (300)
+. +..+..+|+||+.+
T Consensus 101 ~~G~e~f~~~~~~aGvdgvii 121 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLV 121 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEE
Confidence 33 55667799999887
No 425
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=70.66 E-value=36 Score=29.58 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=41.8
Q ss_pred HHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEE------------ccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 100 EELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIA------------AGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPVia------------aGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.++++...++|+..+.. ..+..+.++++.. ++|++. .++ +.+++..+..+|||.|.+..+.+
T Consensus 26 ~~~a~a~~~~G~~~~~~-~~~~~i~~i~~~~---~~Pil~~~~~d~~~~~~~~~~--~~~~v~~a~~aGad~I~~d~~~~ 99 (221)
T PRK01130 26 AAMALAAVQGGAVGIRA-NGVEDIKAIRAVV---DVPIIGIIKRDYPDSEVYITP--TLKEVDALAAAGADIIALDATLR 99 (221)
T ss_pred HHHHHHHHHCCCeEEEc-CCHHHHHHHHHhC---CCCEEEEEecCCCCCCceECC--CHHHHHHHHHcCCCEEEEeCCCC
Confidence 34555556677765553 3466777777665 677751 222 45689999999999999887665
Q ss_pred c
Q 022271 168 A 168 (300)
Q Consensus 168 ~ 168 (300)
.
T Consensus 100 ~ 100 (221)
T PRK01130 100 P 100 (221)
T ss_pred C
Confidence 3
No 426
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=70.49 E-value=72 Score=27.70 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=23.9
Q ss_pred cEEEccCCCCh-H-H--------HHHHHHCCCcEEEecccccc
Q 022271 136 PIIAAGGIVDA-R-G--------YVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 136 PViaaGGI~~g-~-~--------v~aal~lGAdgV~~GT~fl~ 168 (300)
.++..+||+-. . . +..+...|||.+++|+....
T Consensus 159 ~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~ 201 (213)
T TIGR01740 159 FLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYA 201 (213)
T ss_pred ceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcC
Confidence 47889999733 1 2 26777899999999976553
No 427
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=70.21 E-value=41 Score=32.68 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=54.9
Q ss_pred ccccCC-ccceecC---CCCCCCCcHHHHHHHHh--CCceEEecC------CCCCCH----HHHHHHHHHHHhhcCC--c
Q 022271 4 RGMLGF-EYGIVQA---PLGPDISGPELVAAVAN--AGGLGLLRA------PDWEAP----DYLRDLIRKTRSLTER--P 65 (300)
Q Consensus 4 ~~~lg~-~~Pii~a---pM~~g~s~~~la~avs~--aGglG~i~~------~~~~~~----~~l~~~i~~~r~~~~~--P 65 (300)
.+++|+ +-|++.. |-- |.|..+++..+-+ .||+.++=. ..+... ..+.+.+++..+.|++ -
T Consensus 123 R~~lgv~~RPL~gtiiKP~~-Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~ 201 (412)
T cd08213 123 REILGIKDRPLLGTVPKPKV-GLSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKA 201 (412)
T ss_pred HHHhCCCCCCeEEeecCccc-CCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcce
Confidence 456664 5687765 532 6788877776643 577887621 112221 2344445555556654 4
Q ss_pred EEeeeecCCC-cHHHHHHHHHcCCcEEEEcC
Q 022271 66 FGVGVVLAFP-HNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 66 ~gvnl~~~~~-~~~~~~~~~e~g~~~i~~~~ 95 (300)
+.+|+..... -.+..+.+.+.|.+++.++.
T Consensus 202 y~~NiT~~~~em~~ra~~a~e~G~~~~mv~~ 232 (412)
T cd08213 202 YLANITAPVREMERRAELVADLGGKYVMIDV 232 (412)
T ss_pred EEEEecCCHHHHHHHHHHHHHhCCCeEEeec
Confidence 8889875411 14667888899998887653
No 428
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=70.02 E-value=63 Score=26.83 Aligned_cols=64 Identities=19% Similarity=0.075 Sum_probs=40.4
Q ss_pred HHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 103 VLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 103 v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++.+.+.|...+|..........+.... +...+....+.+.+++.++...|+|.|.+++.|=..
T Consensus 65 ~~~a~~~g~~~vh~~~~~~~~~~~~~~~---~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~ 128 (196)
T cd00564 65 VDLALAVGADGVHLGQDDLPVAEARALL---GPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTP 128 (196)
T ss_pred HHHHHHcCCCEEecCcccCCHHHHHHHc---CCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCC
Confidence 4445567777666433222233333333 233444455678999999999999999999887543
No 429
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=69.98 E-value=81 Score=29.40 Aligned_cols=84 Identities=12% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCC-C----cHHHHHHHHHcCCcEEEEcCC--------CCcHHHHHHHHH-CCC
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAF-P----HNENIKAILSEKVAVLQVSWG--------EYSEELVLEAHS-AGV 111 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~-~----~~~~~~~~~e~g~~~i~~~~G--------~~~~~~v~~~~~-~G~ 111 (300)
.+|+.+.+.++.+|+.++.|+.+++-... + ..+.++.+.+.|++.|.++.. ....+.+.++++ ..+
T Consensus 116 ~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~i 195 (321)
T PRK10415 116 QYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSI 195 (321)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCC
Confidence 46999999999999988999999885422 1 235667788899999987642 123456666655 577
Q ss_pred eEeeccChhchHHHHHHhh
Q 022271 112 KVVPQDGLISLLPMVVDLI 130 (300)
Q Consensus 112 ~v~~~~~~~~ll~~v~~~~ 130 (300)
.|+.. |.+.-...+.+.+
T Consensus 196 PVI~n-GgI~s~~da~~~l 213 (321)
T PRK10415 196 PVIAN-GDITDPLKARAVL 213 (321)
T ss_pred cEEEe-CCCCCHHHHHHHH
Confidence 77764 4343344444443
No 430
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=69.93 E-value=90 Score=28.62 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=77.0
Q ss_pred cceecCCCCC--CCCc---HHHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc--CCcEEeeeecCCCc--
Q 022271 11 YGIVQAPLGP--DISG---PELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPH-- 76 (300)
Q Consensus 11 ~Pii~apM~~--g~s~---~~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~~-- 76 (300)
+|.+.-|+.- -+.. .+++.-....|.=|++.+|. .++.++-.+.++.+.+.. +.|+-++.......
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~a 84 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDET 84 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHH
Confidence 4555557731 1221 35666666778667664432 367777777777766543 24554444432211
Q ss_pred HHHHHHHHHcCCcEEEEcC------------------------------------CC-CcHHHHHHHH-HCCCeEeec--
Q 022271 77 NENIKAILSEKVAVLQVSW------------------------------------GE-YSEELVLEAH-SAGVKVVPQ-- 116 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~------------------------------------G~-~~~~~v~~~~-~~G~~v~~~-- 116 (300)
.+..+.+.+.|++.+.+.. |. .+.+++.++. +..-.+...
T Consensus 85 i~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~s 164 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKES 164 (294)
T ss_pred HHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeC
Confidence 2234444455555554321 10 1223333332 211111111
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.+.+..+.++..... .+..|+ .| ....+..++.+||+|.+.|+..+..++
T Consensus 165 s~d~~~~~~~~~~~~-~~~~v~-~G---~d~~~~~~l~~Ga~G~is~~~n~~P~~ 214 (294)
T TIGR02313 165 NKDFEHLNHLFLEAG-RDFLLF-CG---IELLCLPMLAIGAAGSIAATANVEPKE 214 (294)
T ss_pred CCCHHHHHHHHHhcC-CCeEEE-Ec---chHHHHHHHHCCCCEEEecHHhhCHHH
Confidence 122333344433321 133333 22 225566788999999999999888765
No 431
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=69.91 E-value=88 Score=28.49 Aligned_cols=69 Identities=10% Similarity=-0.039 Sum_probs=37.3
Q ss_pred HHHHHHHHhC-CceEEecCCC-----CCCHHHHHHHHHHHHhhcC--CcEEeeeecCCC--cHHHHHHHHHcCCcEEEE
Q 022271 25 PELVAAVANA-GGLGLLRAPD-----WEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFP--HNENIKAILSEKVAVLQV 93 (300)
Q Consensus 25 ~~la~avs~a-GglG~i~~~~-----~~~~~~l~~~i~~~r~~~~--~P~gvnl~~~~~--~~~~~~~~~e~g~~~i~~ 93 (300)
.+++.-...+ |.=|++.++. .++.++-.+.++.+.+..+ .|+-+++..... ..+..+.+.+.|++.+.+
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~ 102 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISA 102 (288)
T ss_pred HHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3566666667 7666654432 3566777777776665533 344444432211 134455556666666654
No 432
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=69.89 E-value=88 Score=28.48 Aligned_cols=69 Identities=19% Similarity=0.050 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhcC--CcEEeeeecCCC--cHHHHHHHHHcCCcEEEE
Q 022271 25 PELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFP--HNENIKAILSEKVAVLQV 93 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~~--~P~gvnl~~~~~--~~~~~~~~~e~g~~~i~~ 93 (300)
.+++.-..+.|.=|++.++. .++.++-.+.++.+++..+ .|+-+++..... ..+.++.+.+.|++.|.+
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~ 102 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALV 102 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEE
Confidence 35666666778767664332 3677877777777776543 465454443221 134556666667776655
No 433
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=69.64 E-value=63 Score=31.34 Aligned_cols=90 Identities=17% Similarity=0.273 Sum_probs=55.1
Q ss_pred ccccCC-ccceecC---CCCCCCCcHHHHHHHHh--CCceEEecC------CCCCCH----HHHHHHHHHHHhhcCC--c
Q 022271 4 RGMLGF-EYGIVQA---PLGPDISGPELVAAVAN--AGGLGLLRA------PDWEAP----DYLRDLIRKTRSLTER--P 65 (300)
Q Consensus 4 ~~~lg~-~~Pii~a---pM~~g~s~~~la~avs~--aGglG~i~~------~~~~~~----~~l~~~i~~~r~~~~~--P 65 (300)
.+++|+ +-|++.. |-- |.|..+++..+-+ .||+.++=. ..|... ..+.+.+++..+.|++ -
T Consensus 135 R~llgv~~RPLigtiiKP~~-Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ 213 (406)
T cd08207 135 RRLTGVEDRPLIGTIIKPSV-GLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVM 213 (406)
T ss_pred HHHhCCCCCceEEEeccccc-CCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcce
Confidence 456665 5677765 522 5788777776543 577877621 112121 2344555555555653 4
Q ss_pred EEeeeecCCCc--HHHHHHHHHcCCcEEEEcC
Q 022271 66 FGVGVVLAFPH--NENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 66 ~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~ 95 (300)
|.+|+... ++ .+..+.+++.|..++.++.
T Consensus 214 y~~NiT~~-~~em~~ra~~~~~~G~~~~mv~~ 244 (406)
T cd08207 214 YAFNITDD-IDEMRRNHDLVVEAGGTCVMVSL 244 (406)
T ss_pred EEEecCCC-HHHHHHHHHHHHHhCCCeEEEec
Confidence 88898864 22 4667888899999887764
No 434
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=69.62 E-value=32 Score=33.83 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=67.1
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc--HHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS--EELV 103 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~--~~~v 103 (300)
++.+..|.+|||-+...+ + .++---+.-+++ .+...-.-++.+...-...+++.+.+.+|++|.+..|... .+.+
T Consensus 62 ~~~acSSAaGGLkmvv~G-l-v~~~TaeAAk~A-AlgAGA~V~~~~a~~l~~~~l~~I~~~~PDIILLaGGtDGG~~e~~ 138 (463)
T TIGR01319 62 AKKACSSAAGGLAMAAIG-L-VPEITAEAAKRA-AHGAGAKIANVYAYDLNNKDIEAIEESNLDIILFAGGTDGGEEECG 138 (463)
T ss_pred eEEEEcccCCChheEEEe-c-cchhhHHHHHHH-HhcCCcEEEEEEeecCCHHHHHHHhhcCCCEEEEeCCcCCCchHHH
Confidence 344445778999888764 3 343222222222 1222223344444444678899999999999999876531 1221
Q ss_pred HHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 104 LEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 104 ~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
- . ..+.....+ .++|||.||-....+++.+.|. .++-.
T Consensus 139 l----------------~-NA~~La~~~-~~~pIIyAGN~~a~~~V~~il~-~~~~~ 176 (463)
T TIGR01319 139 I----------------H-NAKMLAEHG-LDCAIIVAGNKDIQDEVQEIFD-HADIF 176 (463)
T ss_pred H----------------H-HHHHHHhcC-CCCcEEEeCCHHHHHHHHHHHh-cCCce
Confidence 1 1 111111211 3799999999999999999998 55544
No 435
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=69.29 E-value=65 Score=32.88 Aligned_cols=108 Identities=13% Similarity=0.167 Sum_probs=63.8
Q ss_pred HHHHHHHHhh-cCCcE-----EeeeecCCCc-----HHHHHHHHHcCCcEEEEcCCCC----cHHHHHHHHHCCCeE---
Q 022271 52 RDLIRKTRSL-TERPF-----GVGVVLAFPH-----NENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKV--- 113 (300)
Q Consensus 52 ~~~i~~~r~~-~~~P~-----gvnl~~~~~~-----~~~~~~~~e~g~~~i~~~~G~~----~~~~v~~~~~~G~~v--- 113 (300)
.+.++.+|+. .+.|+ |.|++.+.++ ...++.+.+.|+++|-++.... ....++.+++.|.++
T Consensus 64 ~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~ 143 (593)
T PRK14040 64 WERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGT 143 (593)
T ss_pred HHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEE
Confidence 4566677664 34455 5577766553 3447788888888875542111 123445555566542
Q ss_pred ----------------------------eec---cC------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHH---HH
Q 022271 114 ----------------------------VPQ---DG------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA---AL 153 (300)
Q Consensus 114 ----------------------------~~~---~~------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~a---al 153 (300)
+.. .| ...++..+++.+ ++||-.-+-=..|-.++. |+
T Consensus 144 i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~---~~pi~~H~Hnt~GlA~An~laAi 220 (593)
T PRK14040 144 LSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV---DVPLHLHCHATTGLSTATLLKAI 220 (593)
T ss_pred EEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc---CCeEEEEECCCCchHHHHHHHHH
Confidence 211 11 345667777666 688877666666666654 45
Q ss_pred HCCCcEEEe
Q 022271 154 SLGAQGICL 162 (300)
Q Consensus 154 ~lGAdgV~~ 162 (300)
.+||+.|..
T Consensus 221 eAGa~~vD~ 229 (593)
T PRK14040 221 EAGIDGVDT 229 (593)
T ss_pred HcCCCEEEe
Confidence 589998775
No 436
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=69.27 E-value=13 Score=34.19 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCC-cHHHHHHHHHcCCcEEEEc
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP-HNENIKAILSEKVAVLQVS 94 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~-~~~~~~~~~e~g~~~i~~~ 94 (300)
.+++.+.+.++++|+.++.|+.|++..... ..+.++.+.+.|++.|.++
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 140 QDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 478999999999999889999999874322 2456778889999999764
No 437
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=69.22 E-value=45 Score=29.72 Aligned_cols=83 Identities=8% Similarity=0.094 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCC-----cHHHHHHHHHC--CCeEee
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEY-----SEELVLEAHSA--GVKVVP 115 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~-----~~~~v~~~~~~--G~~v~~ 115 (300)
.+|+.+.+.++.+++ .++|+.|++-...+. .+..+.+.+.|++.|.++.+.+ ..+.+.+++++ .+.++.
T Consensus 118 ~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg 196 (231)
T TIGR00736 118 KNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG 196 (231)
T ss_pred CCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE
Confidence 489999999999995 489999999875442 4677888999999998875432 24667777765 377776
Q ss_pred ccChhchHHHHHHhh
Q 022271 116 QDGLISLLPMVVDLI 130 (300)
Q Consensus 116 ~~~~~~ll~~v~~~~ 130 (300)
. |.+.-...+.+.+
T Consensus 197 N-GgI~s~eda~e~l 210 (231)
T TIGR00736 197 N-NSIDDIESAKEML 210 (231)
T ss_pred E-CCcCCHHHHHHHH
Confidence 4 4344444444443
No 438
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=69.11 E-value=59 Score=30.85 Aligned_cols=90 Identities=21% Similarity=0.203 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCcEEEEcCCC-Cc-------HHHHHHHHHCCCeEeec---------------cChhch-HHHHHHhhCC
Q 022271 77 NENIKAILSEKVAVLQVSWGE-YS-------EELVLEAHSAGVKVVPQ---------------DGLISL-LPMVVDLIGD 132 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~-~~-------~~~v~~~~~~G~~v~~~---------------~~~~~l-l~~v~~~~~~ 132 (300)
.+.++.+++.|+..|.+-.-. +. ..+.+.+++.|+.++.. .+.-.+ +.+.+..+
T Consensus 160 l~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~vdlAl~~~aDGVHLgq~dl~~~~aR~ll-- 237 (347)
T PRK02615 160 LEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGALFIVNDRVDIALAVDADGVHLGQEDLPLAVARQLL-- 237 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEEeChhhcCHHHHHHhc--
Confidence 456778888899988774321 11 12333345667776643 111111 33444443
Q ss_pred CCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 133 RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 133 ~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
..--+......+.+++..|...|||.|.+|..|-.+
T Consensus 238 -g~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~ 273 (347)
T PRK02615 238 -GPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTP 273 (347)
T ss_pred -CCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCC
Confidence 122355677789999999999999999999888753
No 439
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=68.56 E-value=95 Score=28.34 Aligned_cols=143 Identities=16% Similarity=0.078 Sum_probs=74.4
Q ss_pred HHHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc--CCcEEeeeecCCC--cHHHHHHHHHcCCcEEEEcC
Q 022271 25 PELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFP--HNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~--~~~~~~~~~e~g~~~i~~~~ 95 (300)
.+++....+.|.=|++.+|. .++.++-.+.++.+.+.. +.|+-+++-. .. ..+..+.+.+.|++.+.+..
T Consensus 24 ~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECC
Confidence 35666667788777764432 467787777787776654 3566555532 11 12344555555666554421
Q ss_pred --------------------------------CC-CcHHHHHHHHH-CCCeEeec--cChhchHHHHHHhhCCCCCcEEE
Q 022271 96 --------------------------------GE-YSEELVLEAHS-AGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIA 139 (300)
Q Consensus 96 --------------------------------G~-~~~~~v~~~~~-~G~~v~~~--~~~~~ll~~v~~~~~~~~iPVia 139 (300)
|. .+.+++.++.+ ..-.+... .+.+..+.++.+... .+..| .
T Consensus 103 P~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~pnivgiKds~~d~~~~~~~~~~~~-~~~~v-~ 180 (289)
T cd00951 103 PYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERCPNLVGFKDGVGDIELMRRIVAKLG-DRLLY-L 180 (289)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhcC-CCeEE-E
Confidence 10 12334444333 22111111 123344444544432 12332 2
Q ss_pred ccCCCChH-HHHHHHHCCCcEEEeccccccCcc
Q 022271 140 AGGIVDAR-GYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 140 aGGI~~g~-~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
. |-.+.+ -+..++.+||+|..-|+..+.+++
T Consensus 181 ~-G~~~~d~~~~~~l~~Ga~G~is~~~n~~P~~ 212 (289)
T cd00951 181 G-GLPTAEVFALAYLAMGVPTYSSAVFNFVPEI 212 (289)
T ss_pred e-CCCcchHhHHHHHHCCCCEEEechhhhhHHH
Confidence 2 222222 357888999999999988776654
No 440
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=68.54 E-value=8.9 Score=35.58 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=35.3
Q ss_pred hHHHHHHhhCC---CCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 122 LLPMVVDLIGD---RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 122 ll~~v~~~~~~---~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
++.+++++++. .++.++++||| |.+.+.++...|.|.+-+||....
T Consensus 230 ~~~~~~~~l~~~g~~~~~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~ 278 (302)
T cd01571 230 LIREVRWALDIRGYKHVKIFVSGGL-DEEDIKELEDVGVDAFGVGTAISK 278 (302)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 34444444421 25789999999 999999999999999999997744
No 441
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=68.39 E-value=67 Score=31.60 Aligned_cols=88 Identities=10% Similarity=0.156 Sum_probs=57.1
Q ss_pred HHHHHHHhCCceEEe--cCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcC-------
Q 022271 26 ELVAAVANAGGLGLL--RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSW------- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i--~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~------- 95 (300)
+++..+.++|.--+. -+.|..+|++..+.++.+|+..+.|+++-.-..... ....-.++++|+++|..+.
T Consensus 158 ~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~ga 237 (448)
T PRK12331 158 KLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGT 237 (448)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCc
Confidence 677777788753221 223468999999999999998777766533222211 4456677799999998754
Q ss_pred CCCc-HHHHHHHHHCCCeE
Q 022271 96 GEYS-EELVLEAHSAGVKV 113 (300)
Q Consensus 96 G~~~-~~~v~~~~~~G~~v 113 (300)
|.++ .+++..++..|...
T Consensus 238 GN~~tE~lv~~L~~~g~~t 256 (448)
T PRK12331 238 SQPATESMVAALQDLGYDT 256 (448)
T ss_pred CCHhHHHHHHHHHhcCCCC
Confidence 3332 45666666666554
No 442
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=68.26 E-value=16 Score=33.25 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=56.0
Q ss_pred ccceecCCCCCCCCcH---HHHHHHHhCCceEE---ecCCC-------CCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc
Q 022271 10 EYGIVQAPLGPDISGP---ELVAAVANAGGLGL---LRAPD-------WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH 76 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~---~la~avs~aGglG~---i~~~~-------~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~ 76 (300)
+.|++. .+. +.+.. +.+..+.++|.-++ ++|.+ ..+++.+.+.++++|+.++.|+.+++......
T Consensus 98 ~~pvi~-si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~ 175 (289)
T cd02810 98 GQPLIA-SVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDL 175 (289)
T ss_pred CCeEEE-Eec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCH
Confidence 567775 454 44433 44555566654322 13332 13678899999999998899999999875542
Q ss_pred ---HHHHHHHHHcCCcEEEEc
Q 022271 77 ---NENIKAILSEKVAVLQVS 94 (300)
Q Consensus 77 ---~~~~~~~~e~g~~~i~~~ 94 (300)
.+.++.+.+.|+++|.++
T Consensus 176 ~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 176 EDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 456788889999999875
No 443
>PRK08508 biotin synthase; Provisional
Probab=68.16 E-value=95 Score=28.22 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=49.7
Q ss_pred CCcHHHHHHHHh---CCceEEe--cCCC-C--CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEE
Q 022271 22 ISGPELVAAVAN---AGGLGLL--RAPD-W--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (300)
Q Consensus 22 ~s~~~la~avs~---aGglG~i--~~~~-~--~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~ 93 (300)
.|..+++..+.. .|.-.+. ..+. + ...+.+.+.++.+|+.... +.+-........+.++.+.++|++.+..
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHHcCCCEEcc
Confidence 355566655443 4665542 2211 1 1346677777788765311 1121122234688999999999988754
Q ss_pred cC------------CCCcHH---HHHHHHHCCCeEe
Q 022271 94 SW------------GEYSEE---LVLEAHSAGVKVV 114 (300)
Q Consensus 94 ~~------------G~~~~~---~v~~~~~~G~~v~ 114 (300)
.. +....+ .++.+|+.|+.+-
T Consensus 119 ~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 154 (279)
T PRK08508 119 NLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLC 154 (279)
T ss_pred cccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeec
Confidence 21 111233 4455778887763
No 444
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=68.15 E-value=96 Score=28.24 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=49.6
Q ss_pred CCCcHHHHHHHHhCCceEEecCC--------CC-----CCHHHHHHHHHHHHhhcCCcEEe-eeecC-C-CcHH----HH
Q 022271 21 DISGPELVAAVANAGGLGLLRAP--------DW-----EAPDYLRDLIRKTRSLTERPFGV-GVVLA-F-PHNE----NI 80 (300)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~--------~~-----~~~~~l~~~i~~~r~~~~~P~gv-nl~~~-~-~~~~----~~ 80 (300)
+.=+...|..+.++|.=.++ .+ ++ .+.+++....+.+++-...|+-| ++... . ..++ ..
T Consensus 21 tayD~~sA~i~~~aG~d~il-vGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na~ 99 (263)
T TIGR00222 21 TAYDYSFAKLFADAGVDVIL-VGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNAA 99 (263)
T ss_pred eccCHHHHHHHHHcCCCEEE-ECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHHH
Confidence 34566677777777753322 11 12 56778888888887764444433 11111 1 1111 23
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~ 114 (300)
+.+.+.|++.|-+-.|....+.++.+.+.|+.|+
T Consensus 100 rl~~eaGa~aVkiEgg~~~~~~i~~l~~~gIpV~ 133 (263)
T TIGR00222 100 RVMQETGANAVKLEGGEWLVETVQMLTERGVPVV 133 (263)
T ss_pred HHHHHhCCeEEEEcCcHhHHHHHHHHHHCCCCEE
Confidence 3444467777776644222345566666777766
No 445
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=68.10 E-value=98 Score=28.32 Aligned_cols=68 Identities=10% Similarity=-0.068 Sum_probs=38.1
Q ss_pred HHHHHHHhCC-ceEEecCC-----CCCCHHHHHHHHHHHHhhcC--CcEEeeeecCCC--cHHHHHHHHHcCCcEEEE
Q 022271 26 ELVAAVANAG-GLGLLRAP-----DWEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFP--HNENIKAILSEKVAVLQV 93 (300)
Q Consensus 26 ~la~avs~aG-glG~i~~~-----~~~~~~~l~~~i~~~r~~~~--~P~gvnl~~~~~--~~~~~~~~~e~g~~~i~~ 93 (300)
+++.....+| .=|++.+| ..++.++-.+.++.+.+..+ .|+-+++-.... ..+..+.+.+.|++.|.+
T Consensus 25 ~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 25 QIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSA 102 (290)
T ss_pred HHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 5555556677 55555432 24678888888887776543 465555443221 133455555666666654
No 446
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=67.74 E-value=19 Score=34.09 Aligned_cols=49 Identities=20% Similarity=-0.018 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
+.+.+.+.|+++++.++.|+.|+........+.++.+.+.|+++|.++.
T Consensus 170 ~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 170 DFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 3444557888898888999999988655557888999999999998853
No 447
>PLN02591 tryptophan synthase
Probab=67.63 E-value=55 Score=29.49 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=48.8
Q ss_pred CcHHHHHHHHhC-CceEEecCC---CC--CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc
Q 022271 23 SGPELVAAVANA-GGLGLLRAP---DW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (300)
Q Consensus 23 s~~~la~avs~a-GglG~i~~~---~~--~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~ 94 (300)
+..++....+.+ |.+-.++.. +. ..++.+.+.++++|+.++.|+.+++=. ...++++.+.+.|++.+.+.
T Consensus 143 ~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI--~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 143 PTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGI--SKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred CHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCC--CCHHHHHHHHhcCCCEEEEC
Confidence 444555555555 555544421 11 236788888999999999999887654 34678999999999999884
No 448
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=67.62 E-value=23 Score=33.76 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=38.6
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEe---ccccccCcccCCCHHHHHHHHcCCCcceEEEec
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICL---GTRFVASEESYAHPEYKRKLVEMDKTEYTDVFG 195 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~---GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~ 195 (300)
..|++ .=||.++.|+..+-..|+|+|.+ |-+|+---= .+...-..+.++-...+..+++
T Consensus 218 ~~~lv-~kGV~~~~D~~~a~~tg~~~I~vsnhggrqlD~g~--st~~~L~ei~~av~~~~~vi~d 279 (360)
T COG1304 218 AGPLV-LKGILAPEDAAGAGGTGADGIEVSNHGGRQLDWGI--STADSLPEIVEAVGDRIEVIAD 279 (360)
T ss_pred CCcHH-HhCCCCHHHHHhhccCCceEEEEEcCCCccccCCC--ChHHHHHHHHHHhCCCeEEEec
Confidence 45654 34799999999999999999999 556665422 2333344445544444455555
No 449
>PRK10481 hypothetical protein; Provisional
Probab=67.58 E-value=78 Score=28.07 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=55.1
Q ss_pred CCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC-CcH----HHHHHHHHcCCcE
Q 022271 16 APLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF-PHN----ENIKAILSEKVAV 90 (300)
Q Consensus 16 apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~-~~~----~~~~~~~e~g~~~ 90 (300)
-|-- ++ +.+++|+...+-+|++.. .+++..+..++.++. +.+.-+....+. ... +..+.+.+.++++
T Consensus 114 ~P~~-~i--~~lv~Al~~g~riGVitP----~~~qi~~~~~kw~~~-G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~ 185 (224)
T PRK10481 114 EPSR-IL--PPLVAAIVGGHQVGVIVP----VEEQLAQQAQKWQVL-QKPPVFALASPYHGSEEELIDAGKELLDQGADV 185 (224)
T ss_pred Cchh-hH--HHHHHHhcCCCeEEEEEe----CHHHHHHHHHHHHhc-CCceeEeecCCCCCCHHHHHHHHHHhhcCCCCE
Confidence 4664 45 889999999999999974 467777788888776 333222221111 122 2334444678999
Q ss_pred EEEcCCCCcHHHHHHHH-HCCCeEe
Q 022271 91 LQVSWGEYSEELVLEAH-SAGVKVV 114 (300)
Q Consensus 91 i~~~~G~~~~~~v~~~~-~~G~~v~ 114 (300)
|.+++.....+..+.++ ..|+.|+
T Consensus 186 Ivl~C~G~~~~~~~~le~~lg~PVI 210 (224)
T PRK10481 186 IVLDCLGYHQRHRDLLQKALDVPVL 210 (224)
T ss_pred EEEeCCCcCHHHHHHHHHHHCcCEE
Confidence 99886444434444443 3455555
No 450
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=67.13 E-value=1e+02 Score=28.06 Aligned_cols=27 Identities=19% Similarity=0.057 Sum_probs=22.4
Q ss_pred hHHHHHHHHCCCcEEEeccccccCccc
Q 022271 146 ARGYVAALSLGAQGICLGTRFVASEES 172 (300)
Q Consensus 146 g~~v~aal~lGAdgV~~GT~fl~t~Es 172 (300)
...+...+.+||+|.+.|+..+..+++
T Consensus 182 d~~~~~~l~~Ga~G~i~~~~n~~P~~~ 208 (279)
T cd00953 182 DSLIFSALRSGLDGSVAAASNYLPEVF 208 (279)
T ss_pred HHHHHHHHHcCCCeEEechhhccHHHH
Confidence 456778889999999999998877664
No 451
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=67.05 E-value=1.2e+02 Score=28.76 Aligned_cols=144 Identities=13% Similarity=0.105 Sum_probs=82.3
Q ss_pred HHHHHHHhCCceEEe-cCCCC---CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC----
Q 022271 26 ELVAAVANAGGLGLL-RAPDW---EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE---- 97 (300)
Q Consensus 26 ~la~avs~aGglG~i-~~~~~---~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~---- 97 (300)
+-|.+..+.|...+. .+++. .+.+++.+.++.+++.++.++.+++=. -+.++++.+.++|++.+..+.-.
T Consensus 91 e~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~--l~~eq~~~L~~aGvd~ynhNLeTs~~~ 168 (335)
T COG0502 91 EAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM--LTEEQAEKLADAGVDRYNHNLETSPEF 168 (335)
T ss_pred HHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC--CCHHHHHHHHHcChhheecccccCHHH
Confidence 455555667754443 22222 578888889999997776666665542 34677777888887776442211
Q ss_pred --------Cc---HHHHHHHHHCCCeEeec----------------------------------------------cChh
Q 022271 98 --------YS---EELVLEAHSAGVKVVPQ----------------------------------------------DGLI 120 (300)
Q Consensus 98 --------~~---~~~v~~~~~~G~~v~~~----------------------------------------------~~~~ 120 (300)
+- -..+..++++|+.+-.. .+.+
T Consensus 169 y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~ 248 (335)
T COG0502 169 YENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPF 248 (335)
T ss_pred HcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHH
Confidence 11 13344455666554321 1122
Q ss_pred chHHHHHHh-hCCCCCcEEEccCCCC--hHHHHHHHHCCCcEEEeccccccCcc
Q 022271 121 SLLPMVVDL-IGDRDIPIIAAGGIVD--ARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 121 ~ll~~v~~~-~~~~~iPViaaGGI~~--g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
..+.-|+-+ +--.+.-|.++||... ++-..-++..||..++.|--++.+.-
T Consensus 249 e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~ 302 (335)
T COG0502 249 EFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPG 302 (335)
T ss_pred HHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccceeeecceEeecCC
Confidence 333332221 0012455677777643 44456788899999999986666654
No 452
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=66.80 E-value=80 Score=27.32 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=72.5
Q ss_pred HHHHHHHHhCCceEEe---cCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-C----
Q 022271 25 PELVAAVANAGGLGLL---RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-G---- 96 (300)
Q Consensus 25 ~~la~avs~aGglG~i---~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-G---- 96 (300)
-+=+.++.++|. -++ +. ....|+.+.+.++++|+.. . =+|-.-...+....+.+.|+|+|.+.. |
T Consensus 54 ~~ev~~l~~aGa-dIIAlDaT-~R~Rp~~l~~li~~i~~~~-~----l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~ 126 (192)
T PF04131_consen 54 LKEVDALAEAGA-DIIALDAT-DRPRPETLEELIREIKEKY-Q----LVMADISTLEEAINAAELGFDIIGTTLSGYTPY 126 (192)
T ss_dssp HHHHHHHHHCT--SEEEEE-S-SSS-SS-HHHHHHHHHHCT-S----EEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTT
T ss_pred HHHHHHHHHcCC-CEEEEecC-CCCCCcCHHHHHHHHHHhC-c----EEeeecCCHHHHHHHHHcCCCEEEcccccCCCC
Confidence 366778888884 222 22 2344588999999999864 2 223333457788889999999998753 2
Q ss_pred ---C-CcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHH
Q 022271 97 ---E-YSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 153 (300)
Q Consensus 97 ---~-~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal 153 (300)
. |.-++++++.+.++.|+. +|-+.--.++.+++.-----|+..+.|..+..+.+-+
T Consensus 127 t~~~~pD~~lv~~l~~~~~pvIa-EGri~tpe~a~~al~~GA~aVVVGsAITrP~~It~~F 186 (192)
T PF04131_consen 127 TKGDGPDFELVRELVQADVPVIA-EGRIHTPEQAAKALELGAHAVVVGSAITRPQEITKRF 186 (192)
T ss_dssp STTSSHHHHHHHHHHHTTSEEEE-ESS--SHHHHHHHHHTT-SEEEE-HHHH-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHhCCCcEee-cCCCCCHHHHHHHHhcCCeEEEECcccCCHHHHHHHH
Confidence 1 223778888888999877 4544444444444421124578888899998877654
No 453
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=66.24 E-value=22 Score=33.31 Aligned_cols=49 Identities=18% Similarity=-0.032 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
+.+.+.+.|+.+++.++.|+.|+........+.++.+.+.|+++|.++.
T Consensus 163 ~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 163 NFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 3444557888888888999999987665567889999999999998874
No 454
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=66.16 E-value=11 Score=37.64 Aligned_cols=53 Identities=17% Similarity=0.373 Sum_probs=44.8
Q ss_pred ccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh
Q 022271 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL 61 (300)
Q Consensus 6 ~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~ 61 (300)
-+.++.|++.++|. .++..+||.++++.||+|++.. + +++++..++++++++.
T Consensus 47 ~i~l~iP~~Satmd-tvtgdalAiala~~gG~g~Ih~-n-~sie~qa~lV~kVk~~ 99 (502)
T PRK07107 47 AITLNIPLVSAIMQ-SVSDDNMAIALAREGGLSFIFG-S-QSIESEAAMVRRVKNY 99 (502)
T ss_pred ccccCCChHHHHHH-HHhhHHHHHHHHHcCCCeEeeC-C-CCHHHHHHHHHHHHHH
Confidence 45578899999998 7999999999999999999986 3 6888877777777654
No 455
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=66.01 E-value=51 Score=28.94 Aligned_cols=44 Identities=27% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 123 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 123 l~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+...++.+ .-..+..-.+.|-+.+.++..+|+|.|.+|.-|=..
T Consensus 94 ~~~ar~~~---~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~ 137 (211)
T COG0352 94 LAEARELL---GPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTS 137 (211)
T ss_pred hHHHHHhc---CCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCC
Confidence 44455554 344566777889999999999999999999988664
No 456
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=66.01 E-value=18 Score=33.04 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCC-cHHHHHHHHHcCCcEEEE
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP-HNENIKAILSEKVAVLQV 93 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~-~~~~~~~~~e~g~~~i~~ 93 (300)
.+++.+.+.++++|+.++.|+.+++..... ..+.++.+.+.|++.|.+
T Consensus 137 ~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 137 TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 478889999999999889999999865433 245677888999998765
No 457
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=65.74 E-value=59 Score=32.18 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=55.3
Q ss_pred ccccCC-ccceecC---CCCCCCCcHHHHHHHH--hCCceEEecC------CCCCCH----HHHHHHHHHHHhhcCC--c
Q 022271 4 RGMLGF-EYGIVQA---PLGPDISGPELVAAVA--NAGGLGLLRA------PDWEAP----DYLRDLIRKTRSLTER--P 65 (300)
Q Consensus 4 ~~~lg~-~~Pii~a---pM~~g~s~~~la~avs--~aGglG~i~~------~~~~~~----~~l~~~i~~~r~~~~~--P 65 (300)
.+++|+ +-|++.. |-- |.|..+++..+- -.||+.++=. ..+... ..+.+.++++.+.|++ -
T Consensus 152 R~~lgv~~RPL~gtiiKP~~-GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~ 230 (468)
T PRK04208 152 RERLDKYGRPLLGTTPKPKL-GLSAKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKG 230 (468)
T ss_pred HHHhCCCCCceEEEeecccc-CCCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcce
Confidence 456664 5677764 532 678887777653 3578888721 112121 2333455555556653 4
Q ss_pred EEeeeecCCCc--HHHHHHHHHcCCcEEEEcC
Q 022271 66 FGVGVVLAFPH--NENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 66 ~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~ 95 (300)
+.+|+....+. .+..+.+.+.|..++-++.
T Consensus 231 y~~NiT~~~~~em~~ra~~~~e~G~~~~mv~~ 262 (468)
T PRK04208 231 HYLNVTAPTMEEMYKRAEFAKELGSPIVMIDV 262 (468)
T ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 78898865332 4678888899998887654
No 458
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=65.67 E-value=11 Score=37.45 Aligned_cols=156 Identities=24% Similarity=0.302 Sum_probs=100.8
Q ss_pred ccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-----------------------
Q 022271 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT----------------------- 62 (300)
Q Consensus 6 ~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~----------------------- 62 (300)
-+++++||+++||. +++.++|+.++++.||+|++.. + ++.+...+++++++...
T Consensus 40 ~~~l~~Pi~sa~Md-tvt~~~MAiaLAr~GGiGvih~-n-l~~~~q~~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~ 116 (479)
T PRK07807 40 GTGTTIPLVVANMT-AVAGRRMAETVARRGGLVVLPQ-D-IPIDVVAEVVAWVKSRDLVFDTPVTLSPDDTVGDALALLP 116 (479)
T ss_pred CCccccceeecCCc-chhHHHHHHHHHHCCCceEeeC-C-CCHHHHHHHHhhcccccccccCCeEECCCCCHHHHHHHHH
Confidence 35789999999999 8999999999999999999986 4 57776666666554310
Q ss_pred -------------CCcEEeeeecC--------------------------CCcHHHHHHHHHcCCcEEE-Ec--------
Q 022271 63 -------------ERPFGVGVVLA--------------------------FPHNENIKAILSEKVAVLQ-VS-------- 94 (300)
Q Consensus 63 -------------~~P~gvnl~~~--------------------------~~~~~~~~~~~e~g~~~i~-~~-------- 94 (300)
++++| ++.. .+..+.++.+.+.+...+- +.
T Consensus 117 ~~~~s~l~VVD~~gklvG--IVT~rDL~~~~~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGI 194 (479)
T PRK07807 117 KRAHGAVVVVDEEGRPVG--VVTEADCAGVDRFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGV 194 (479)
T ss_pred hcCCceEEEECCCCeEEE--EEeHHHHhcCccCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEE
Confidence 01222 1110 0013455566665554331 11
Q ss_pred ---------CCCC--------------------cHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEE
Q 022271 95 ---------WGEY--------------------SEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 95 ---------~G~~--------------------~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPVi 138 (300)
...+ ..+.++.+.++|+.++.. ...+.++.++++... +++ |
T Consensus 195 IT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p--~~~-v 271 (479)
T PRK07807 195 LTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDP--GVP-I 271 (479)
T ss_pred EEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCC--CCe-E
Confidence 0000 124455556677777654 225667888887652 454 5
Q ss_pred EccCCCChHHHHHHHHCCCcEEE--eccccccC
Q 022271 139 AAGGIVDARGYVAALSLGAQGIC--LGTRFVAS 169 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~--~GT~fl~t 169 (300)
.+|.|.|.+++..++.+|||+|- ||+.-++|
T Consensus 272 ~agnv~t~~~a~~l~~aGad~v~vgig~gsict 304 (479)
T PRK07807 272 VAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCT 304 (479)
T ss_pred EeeccCCHHHHHHHHHcCCCEEEECccCCcccc
Confidence 68999999999999999999876 55655554
No 459
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=65.45 E-value=19 Score=37.33 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=52.6
Q ss_pred cHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++.....+.|...+.. .|.+..|.++++.+ ++||+-===|-|..++..+..+|||+|.+=.++|-
T Consensus 72 ~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v---~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~ 145 (695)
T PRK13802 72 PAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAV---HIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALD 145 (695)
T ss_pred HHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhC---CCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcC
Confidence 345555556666654432 46788899999987 89999888899999999999999999998666664
No 460
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=65.42 E-value=71 Score=31.60 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHHHHHhhc-CCcE-----EeeeecCCCc-----HHHHHHHHHcCCcEEEEcCCCC----cHHHHHHHHHCCCeEeec-
Q 022271 53 DLIRKTRSLT-ERPF-----GVGVVLAFPH-----NENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVPQ- 116 (300)
Q Consensus 53 ~~i~~~r~~~-~~P~-----gvnl~~~~~~-----~~~~~~~~e~g~~~i~~~~G~~----~~~~v~~~~~~G~~v~~~- 116 (300)
+.++.+|+.. +.|+ |.|++...++ +..++.+.+.|++++-+.-... ....++.+++.|..+...
T Consensus 73 erlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i 152 (468)
T PRK12581 73 ERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCI 152 (468)
T ss_pred HHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4456665542 2233 6677766553 3347888888998875532111 133445555556554221
Q ss_pred ---------------------------------cC------hhchHHHHHHhhCCCCCcEEEccCCCChHHHH---HHHH
Q 022271 117 ---------------------------------DG------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYV---AALS 154 (300)
Q Consensus 117 ---------------------------------~~------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~---aal~ 154 (300)
.| ...++..+++.. ++||-.-+-=..|-.++ +|+.
T Consensus 153 ~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~---~~pi~~H~Hnt~GlA~An~laAie 229 (468)
T PRK12581 153 AYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMT---NLPLIVHTHATSGISQMTYLAAVE 229 (468)
T ss_pred EEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhcc---CCeEEEEeCCCCccHHHHHHHHHH
Confidence 11 234555555543 68887666655665555 4455
Q ss_pred CCCcEEEe
Q 022271 155 LGAQGICL 162 (300)
Q Consensus 155 lGAdgV~~ 162 (300)
+||+.|-.
T Consensus 230 AGad~vD~ 237 (468)
T PRK12581 230 AGADRIDT 237 (468)
T ss_pred cCCCEEEe
Confidence 89887655
No 461
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=65.37 E-value=67 Score=31.81 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHH----HCC---CeEeec------------------------------cC-
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAH----SAG---VKVVPQ------------------------------DG- 118 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~----~~G---~~v~~~------------------------------~~- 118 (300)
.+.++.+.+.+++.|.+++=.-+. -+..++ +.+ ..++.. .+
T Consensus 174 ~~Dl~~~~~~~~d~I~lskV~sa~-dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi~iG~gDL~~~lg~ 252 (473)
T TIGR01064 174 KKDLKFGVEQGVDMVAASFVRTAE-DVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGIMVARGDLGVEIPA 252 (473)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHH-HHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcEEEchHHHHhhcCc
Confidence 456888899999999998743233 333332 323 445543 01
Q ss_pred --hhchHHHHHHhhCCCCCcEEEccC------------CCChHHHHHHHHCCCcEEEec
Q 022271 119 --LISLLPMVVDLIGDRDIPIIAAGG------------IVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 119 --~~~ll~~v~~~~~~~~iPViaaGG------------I~~g~~v~aal~lGAdgV~~G 163 (300)
......++..+.+..++|+|.+.= -++..|++.++..|+|+|+++
T Consensus 253 ~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls 311 (473)
T TIGR01064 253 EEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLS 311 (473)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEc
Confidence 111222233322223789998772 237789999999999999996
No 462
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=65.13 E-value=1.1e+02 Score=28.02 Aligned_cols=118 Identities=22% Similarity=0.185 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecC-CC--cHHHHHHHHHc-C-CcEEEE--cCCCCcH---HHHHHHHHCCCeEee
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLA-FP--HNENIKAILSE-K-VAVLQV--SWGEYSE---ELVLEAHSAGVKVVP 115 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~-~~--~~~~~~~~~e~-g-~~~i~~--~~G~~~~---~~v~~~~~~G~~v~~ 115 (300)
.+++++.+.+++.++.. --.+++-.. .+ ..+.++.+.+. + ++ +.+ +.+-..+ ++.+.+.+.++..+-
T Consensus 133 ~~~~~~~~~~~~~~~~G--f~~iKik~g~~~~~d~~~v~~lr~~~g~~~-l~vD~n~~~~~~~A~~~~~~l~~~~l~~iE 209 (316)
T cd03319 133 DTPEAMAAAAKKAAKRG--FPLLKIKLGGDLEDDIERIRAIREAAPDAR-LRVDANQGWTPEEAVELLRELAELGVELIE 209 (316)
T ss_pred CCHHHHHHHHHHHHHcC--CCEEEEEeCCChhhHHHHHHHHHHhCCCCe-EEEeCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 46777777777665532 223333222 11 23455565553 3 22 222 2222122 444555667877775
Q ss_pred c---cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccC
Q 022271 116 Q---DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVAS 169 (300)
Q Consensus 116 ~---~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t 169 (300)
+ ...+..+.++++.. ++||++.+.+.+..++..++.. ++|.|++-...+..
T Consensus 210 eP~~~~d~~~~~~L~~~~---~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GG 264 (316)
T cd03319 210 QPVPAGDDDGLAYLRDKS---PLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGG 264 (316)
T ss_pred CCCCCCCHHHHHHHHhcC---CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCC
Confidence 4 12455677787776 7999999999999999999985 68899987665543
No 463
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=65.02 E-value=81 Score=31.03 Aligned_cols=108 Identities=14% Similarity=0.151 Sum_probs=58.9
Q ss_pred HHHHHHHHhh-cCCcE-----EeeeecCCCc-----HHHHHHHHHcCCcEEEEcCCCC----cHHHHHHHHHCCCeEeec
Q 022271 52 RDLIRKTRSL-TERPF-----GVGVVLAFPH-----NENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 52 ~~~i~~~r~~-~~~P~-----gvnl~~~~~~-----~~~~~~~~e~g~~~i~~~~G~~----~~~~v~~~~~~G~~v~~~ 116 (300)
.+.++.+++. .+.++ +-|+....++ .+.++.+.+.|+++|-+..... ..+.++.+++.|..+...
T Consensus 63 ~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 63 WERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred HHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEE
Confidence 3455666554 33344 2355554332 4566778888888775542210 234555566666554211
Q ss_pred ----------------------------------cC------hhchHHHHHHhhCCCCCcEEEccCCCChHHHH---HHH
Q 022271 117 ----------------------------------DG------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYV---AAL 153 (300)
Q Consensus 117 ----------------------------------~~------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~---aal 153 (300)
.| ...++..+++.+ ++||-.-+-=..|-.++ +|+
T Consensus 143 i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~---~~pi~~H~Hnt~GlA~AN~laAi 219 (448)
T PRK12331 143 ISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAV---TVPLEVHTHATSGIAEMTYLKAI 219 (448)
T ss_pred EEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCCCCcHHHHHHHHH
Confidence 11 334666666665 57876655444444444 455
Q ss_pred HCCCcEEEe
Q 022271 154 SLGAQGICL 162 (300)
Q Consensus 154 ~lGAdgV~~ 162 (300)
.+||+.|-.
T Consensus 220 eaGad~vD~ 228 (448)
T PRK12331 220 EAGADIIDT 228 (448)
T ss_pred HcCCCEEEe
Confidence 689987765
No 464
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=64.98 E-value=47 Score=31.24 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aa 152 (300)
....+.+.+.|.++++..|.. +-++.+.+.|+..+... ..+.||..+.+. +.|||.+=|.++-+++..+
T Consensus 79 ~~L~~~~~~~Gi~~~stpfd~---~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~----gkPvilStGmatl~Ei~~A 151 (329)
T TIGR03569 79 RELKEYCESKGIEFLSTPFDL---ESADFLEDLGVPRFKIPSGEITNAPLLKKIARF----GKPVILSTGMATLEEIEAA 151 (329)
T ss_pred HHHHHHHHHhCCcEEEEeCCH---HHHHHHHhcCCCEEEECcccccCHHHHHHHHhc----CCcEEEECCCCCHHHHHHH
Confidence 455677888999999998753 45667777788877642 245566666553 7999999999999999887
Q ss_pred HH----CCCc
Q 022271 153 LS----LGAQ 158 (300)
Q Consensus 153 l~----lGAd 158 (300)
.. .|..
T Consensus 152 v~~i~~~G~~ 161 (329)
T TIGR03569 152 VGVLRDAGTP 161 (329)
T ss_pred HHHHHHcCCC
Confidence 65 5664
No 465
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=64.95 E-value=92 Score=28.29 Aligned_cols=88 Identities=11% Similarity=0.119 Sum_probs=55.6
Q ss_pred HHHHHHHhCCceEEe--cCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcC-------
Q 022271 26 ELVAAVANAGGLGLL--RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSW------- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i--~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~------- 95 (300)
+++..+.++|.--+. -+.|..+|+++.+.++++|+..+.|+++-.-..... ....-.++++|++.|..+.
T Consensus 153 ~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~a 232 (275)
T cd07937 153 KLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGT 232 (275)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCc
Confidence 555566777754332 222457999999999999988777776533322221 3455566788999998654
Q ss_pred CCC-cHHHHHHHHHCCCeE
Q 022271 96 GEY-SEELVLEAHSAGVKV 113 (300)
Q Consensus 96 G~~-~~~~v~~~~~~G~~v 113 (300)
|++ ...++..++..|...
T Consensus 233 GN~~~E~l~~~L~~~g~~~ 251 (275)
T cd07937 233 SQPSTESMVAALRGTGRDT 251 (275)
T ss_pred CChhHHHHHHHHHccCCCC
Confidence 332 356666677666543
No 466
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=64.94 E-value=23 Score=32.86 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEeeeecCCC-----cHHHHHHHHHcCCcEEEEcC--------CCCcHHHHHHHHH-CC
Q 022271 45 WEAPDYLRDLIRKTRSLTERPFGVGVVLAFP-----HNENIKAILSEKVAVLQVSW--------GEYSEELVLEAHS-AG 110 (300)
Q Consensus 45 ~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~-----~~~~~~~~~e~g~~~i~~~~--------G~~~~~~v~~~~~-~G 110 (300)
+.+|+.+.+.++.+++.++.|+.|++-.... ..+.++.+.++|++.|.++. |.+..+.+.++++ ..
T Consensus 104 l~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ 183 (309)
T PF01207_consen 104 LKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP 183 (309)
T ss_dssp GC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T
T ss_pred hcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc
Confidence 3689999999999999999999999876543 25678899999999999985 2123456666554 46
Q ss_pred CeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 111 VKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 111 ~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
+.|+.. |.+.-..++.+.++ .. .+=||.-||+
T Consensus 184 ipvi~N-GdI~s~~d~~~~~~---~t--g~dgvMigRg 215 (309)
T PF01207_consen 184 IPVIAN-GDIFSPEDAERMLE---QT--GADGVMIGRG 215 (309)
T ss_dssp SEEEEE-SS--SHHHHHHHCC---CH---SSEEEESHH
T ss_pred ceeEEc-CccCCHHHHHHHHH---hc--CCcEEEEchh
Confidence 777763 55555566666552 21 3445666655
No 467
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=64.84 E-value=63 Score=29.18 Aligned_cols=25 Identities=8% Similarity=-0.104 Sum_probs=17.5
Q ss_pred ecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 71 VLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 71 ~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
+...+.....+.+...|.|+|++..
T Consensus 24 ~~~~~sp~~~e~~a~~G~D~v~iD~ 48 (256)
T PRK10558 24 WSALANPITTEVLGLAGFDWLVLDG 48 (256)
T ss_pred EEcCCCcHHHHHHHhcCCCEEEEcc
Confidence 3334556677888888888888854
No 468
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=64.77 E-value=54 Score=24.17 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=49.1
Q ss_pred CcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH
Q 022271 75 PHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 154 (300)
Q Consensus 75 ~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~ 154 (300)
...+.++.+.+..++++.+....+. ...+.++.+++..- .++|+|+-+.=.+.....+++.
T Consensus 31 ~~~~~~~~~~~~~~d~iiid~~~~~-----------------~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~~~~ 91 (112)
T PF00072_consen 31 SGEEALELLKKHPPDLIIIDLELPD-----------------GDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQEALR 91 (112)
T ss_dssp SHHHHHHHHHHSTESEEEEESSSSS-----------------SBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHHHHH
T ss_pred CHHHHHHHhcccCceEEEEEeeecc-----------------cccccccccccccc--ccccEEEecCCCCHHHHHHHHH
Confidence 3455666666677777776654431 12345566666554 3799999999999999999999
Q ss_pred CCCcEEEe
Q 022271 155 LGAQGICL 162 (300)
Q Consensus 155 lGAdgV~~ 162 (300)
+|+++...
T Consensus 92 ~g~~~~l~ 99 (112)
T PF00072_consen 92 AGADDYLS 99 (112)
T ss_dssp TTESEEEE
T ss_pred CCCCEEEE
Confidence 99998875
No 469
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=64.50 E-value=71 Score=31.02 Aligned_cols=107 Identities=13% Similarity=0.152 Sum_probs=64.1
Q ss_pred HHHHHHHhhcC------CcEEeeeecCCCc-----HHHHHHHHHcCCcEEEEc-C-CCC--cHHHHHHHHHCCCeEeec-
Q 022271 53 DLIRKTRSLTE------RPFGVGVVLAFPH-----NENIKAILSEKVAVLQVS-W-GEY--SEELVLEAHSAGVKVVPQ- 116 (300)
Q Consensus 53 ~~i~~~r~~~~------~P~gvnl~~~~~~-----~~~~~~~~e~g~~~i~~~-~-G~~--~~~~v~~~~~~G~~v~~~- 116 (300)
+.++++|+... .--|.|+.....+ +.+++...+.|.+++-++ + +.+ -+..++..++.|.++...
T Consensus 66 eRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i 145 (472)
T COG5016 66 ERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTI 145 (472)
T ss_pred HHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEE
Confidence 34566665432 1358899886654 456778888899988432 1 111 123445555666655332
Q ss_pred ---------------------------------cC------hhchHHHHHHhhCCCCCcEEEccCCCChHHHH---HHHH
Q 022271 117 ---------------------------------DG------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYV---AALS 154 (300)
Q Consensus 117 ---------------------------------~~------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~---aal~ 154 (300)
.| ...|+..+++.+ ++||-.----.+|-... +|..
T Consensus 146 ~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~---~~pv~lHtH~TsG~a~m~ylkAvE 222 (472)
T COG5016 146 SYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKEL---PVPVELHTHATSGMAEMTYLKAVE 222 (472)
T ss_pred EeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhc---CCeeEEecccccchHHHHHHHHHH
Confidence 11 345777777766 79998776666665544 5556
Q ss_pred CCCcEEEe
Q 022271 155 LGAQGICL 162 (300)
Q Consensus 155 lGAdgV~~ 162 (300)
+|+|++=.
T Consensus 223 AGvD~iDT 230 (472)
T COG5016 223 AGVDGIDT 230 (472)
T ss_pred hCcchhhh
Confidence 89997643
No 470
>PLN02429 triosephosphate isomerase
Probab=64.40 E-value=58 Score=30.46 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=30.3
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
+++|+-.|+|.......-+...+.||+.+|++-+
T Consensus 263 ~irILYGGSV~~~N~~el~~~~diDG~LVGgASL 296 (315)
T PLN02429 263 KTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASL 296 (315)
T ss_pred CceEEEcCccCHHHHHHHhcCCCCCEEEeeccee
Confidence 6899999999888887777779999999999887
No 471
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=64.37 E-value=20 Score=32.13 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aa 152 (300)
.+..+.+.+.|+++++..|.. +-++.+.+.|+..+... ..+.||..+.+ .+.|||.+-|.++-.++..+
T Consensus 59 ~~L~~~~~~~gi~f~stpfd~---~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~----tgkPvIlSTG~stl~EI~~A 131 (241)
T PF03102_consen 59 KELFEYCKELGIDFFSTPFDE---ESVDFLEELGVPAYKIASGDLTNLPLLEYIAK----TGKPVILSTGMSTLEEIERA 131 (241)
T ss_dssp HHHHHHHHHTT-EEEEEE-SH---HHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT----T-S-EEEE-TT--HHHHHHH
T ss_pred HHHHHHHHHcCCEEEECCCCH---HHHHHHHHcCCCEEEeccccccCHHHHHHHHH----hCCcEEEECCCCCHHHHHHH
Confidence 456788888999999988753 34555555566666532 23445555554 27999999999999999988
Q ss_pred HH
Q 022271 153 LS 154 (300)
Q Consensus 153 l~ 154 (300)
+.
T Consensus 132 v~ 133 (241)
T PF03102_consen 132 VE 133 (241)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 472
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=64.18 E-value=1.1e+02 Score=27.43 Aligned_cols=99 Identities=22% Similarity=0.217 Sum_probs=59.9
Q ss_pred eecCCCCCCCCcH----HHHHHHHhCCceEEe--cCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHH
Q 022271 13 IVQAPLGPDISGP----ELVAAVANAGGLGLL--RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILS 85 (300)
Q Consensus 13 ii~apM~~g~s~~----~la~avs~aGglG~i--~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e 85 (300)
-++.+.+ +.+++ +++..+.++|.-.+. -+.|..+|+++.+.++.+|+..+.|+++-.-..... ....-.+++
T Consensus 127 ~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi~ 205 (259)
T cd07939 127 SVGAEDA-SRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLAAVR 205 (259)
T ss_pred EEeeccC-CCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHH
Confidence 3454554 45555 444555566753322 222467999999999999987666665533322211 445666778
Q ss_pred cCCcEEEEcC-------CCC-cHHHHHHHHHC-CCe
Q 022271 86 EKVAVLQVSW-------GEY-SEELVLEAHSA-GVK 112 (300)
Q Consensus 86 ~g~~~i~~~~-------G~~-~~~~v~~~~~~-G~~ 112 (300)
+|++.|..+. |++ ...++..+++. |..
T Consensus 206 aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~~~~g~~ 241 (259)
T cd07939 206 AGATHVSVTVNGLGERAGNAALEEVVMALKHLYGRD 241 (259)
T ss_pred hCCCEEEEecccccccccCcCHHHHHHHHHHhcCCC
Confidence 9999997754 333 35666666665 654
No 473
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=63.46 E-value=91 Score=26.30 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=28.5
Q ss_pred EEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 137 IIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 137 ViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+....+.+.+++.++..+|+|.+.+|..|-...
T Consensus 97 ~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~ 130 (196)
T TIGR00693 97 KIIGVSTHNLEELAEAEAEGADYIGFGPIFPTPT 130 (196)
T ss_pred CEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCC
Confidence 3556779999999999999999999998876543
No 474
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=63.25 E-value=48 Score=28.80 Aligned_cols=68 Identities=19% Similarity=0.115 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.+.++.+.+..++++.+..+.|. ..-+.++..+++.. .+++|+.--...+...+..++..|
T Consensus 36 ~~~l~~~~~~~pdvvl~Dl~mP~-----------------~~G~e~~~~l~~~~--p~~~vvvlt~~~~~~~v~~al~~G 96 (211)
T COG2197 36 EEALDLARELKPDVVLLDLSMPG-----------------MDGLEALKQLRARG--PDIKVVVLTAHDDPAYVIRALRAG 96 (211)
T ss_pred HHHHHHhhhcCCCEEEEcCCCCC-----------------CChHHHHHHHHHHC--CCCcEEEEeccCCHHHHHHHHHcC
Confidence 55666667777888877766642 12356666677543 268999999999999999999999
Q ss_pred CcEEEec
Q 022271 157 AQGICLG 163 (300)
Q Consensus 157 AdgV~~G 163 (300)
|+|...-
T Consensus 97 a~Gyl~K 103 (211)
T COG2197 97 ADGYLLK 103 (211)
T ss_pred CCEEEeC
Confidence 9998873
No 475
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=63.18 E-value=98 Score=29.24 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=72.3
Q ss_pred CCcEEeeeecCCCc------HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCc
Q 022271 63 ERPFGVGVVLAFPH------NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIP 136 (300)
Q Consensus 63 ~~P~gvnl~~~~~~------~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iP 136 (300)
+.|+.|+=|.+... .+++..+.+.|+++|=++. |..+- -..++++++.+ ++|
T Consensus 19 daPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv--~~~e~-----------------A~A~~~Ik~~~---~vP 76 (361)
T COG0821 19 DAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTV--PDMEA-----------------AEALKEIKQRL---NVP 76 (361)
T ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEec--CCHHH-----------------HHHHHHHHHhC---CCC
Confidence 56777777766432 4567777788888887763 33222 24567788887 899
Q ss_pred EEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcc
Q 022271 137 IIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 189 (300)
Q Consensus 137 ViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~ 189 (300)
+++.=-.. .+-+..+...|+|.+=+=-..+...| .+++.+..+++..
T Consensus 77 LVaDiHf~-~rla~~~~~~g~~k~RINPGNig~~~-----~v~~vVe~Ak~~g 123 (361)
T COG0821 77 LVADIHFD-YRLALEAAECGVDKVRINPGNIGFKD-----RVREVVEAAKDKG 123 (361)
T ss_pred EEEEeecc-HHHHHHhhhcCcceEEECCcccCcHH-----HHHHHHHHHHHcC
Confidence 99998887 88888999999999988766666655 6777777776544
No 476
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=63.03 E-value=93 Score=30.80 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=56.6
Q ss_pred HHHHHHHhCCceEEe--cCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcC-------
Q 022271 26 ELVAAVANAGGLGLL--RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSW------- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i--~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~------- 95 (300)
+++..+.++|.--+. -+.|..+|.++.+.++.+|+..+.|+++-.-..... ....-.++++|+++|..+.
T Consensus 157 ~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~ga 236 (467)
T PRK14041 157 EFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMGT 236 (467)
T ss_pred HHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCCC
Confidence 677777788753322 223468999999999999998777776533322211 4456667799999998754
Q ss_pred CCC-cHHHHHHHHHCCCe
Q 022271 96 GEY-SEELVLEAHSAGVK 112 (300)
Q Consensus 96 G~~-~~~~v~~~~~~G~~ 112 (300)
|.+ ..+++..++..|..
T Consensus 237 gN~atE~lv~~L~~~g~~ 254 (467)
T PRK14041 237 SQPPFESMYYAFRENGKE 254 (467)
T ss_pred CChhHHHHHHHHHhcCCC
Confidence 222 24566666665544
No 477
>TIGR03586 PseI pseudaminic acid synthase.
Probab=62.86 E-value=1.4e+02 Score=28.14 Aligned_cols=107 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC-cHHHHHHHHHCCCeEeec--------
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY-SEELVLEAHSAGVKVVPQ-------- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~-~~~~v~~~~~~G~~v~~~-------- 116 (300)
++.++.++..+..++ .|+.++...-+.+.++.+.+.+++++-+..+.. --++++.+-+.|..|+-.
T Consensus 74 l~~e~~~~L~~~~~~-----~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~E 148 (327)
T TIGR03586 74 TPWEWHKELFERAKE-----LGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEE 148 (327)
T ss_pred CCHHHHHHHHHHHHH-----hCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHH
Q ss_pred ------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 117 ------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 117 ------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
.-.+..++.+.+.. ++||..+.--..-.-..+|.++||+-+
T Consensus 149 i~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f---~~pVG~SDHt~G~~~~~aAva~GA~iI 219 (327)
T TIGR03586 149 IQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERF---NVPVGLSDHTLGILAPVAAVALGACVI 219 (327)
T ss_pred HHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHh---CCCEEeeCCCCchHHHHHHHHcCCCEE
No 478
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=62.85 E-value=37 Score=28.27 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=30.0
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCC--------hHHHHHHHHCCCcEEEeccccccC
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVD--------ARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~--------g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.++..+++...+.++||++.=|-.+ -+.+..+..+|||++.+-..|...
T Consensus 35 ~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~ 91 (201)
T cd00945 35 GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSL 91 (201)
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHH
Confidence 4455555555321478776444333 244567788999999997766544
No 479
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=62.69 E-value=20 Score=34.00 Aligned_cols=144 Identities=17% Similarity=0.157 Sum_probs=78.7
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh------cCCcEEeeeecCCCc--HHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL------TERPFGVGVVLAFPH--NEN 79 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~------~~~P~gvnl~~~~~~--~~~ 79 (300)
+-.++ +.|||- +.|.-.+..-+-.-| .-.+-+. |.-.+.+-.. .+.|.. .|.|+-|++-.+++. .+.
T Consensus 17 ~~~~r-i~APMv-d~S~l~fR~L~R~y~-~~l~yTp-Mi~a~~fv~~-ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~A 91 (358)
T KOG2335|consen 17 GRPKR-IVAPMV-DYSELAFRRLVRLYG-ADLLYTP-MIHAKTFVHS-EKYRDSELSTSPEDRPLIVQFGGNDPENLLKA 91 (358)
T ss_pred CCccc-ccCCcc-cccHHHHHHHHHHhC-CceEech-HHHHHHHhcC-ccchhhhcccCCCCCceEEEEcCCCHHHHHHH
Confidence 33344 778995 899998888766664 4443332 2222222111 122221 378999999887764 344
Q ss_pred HHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCC-CCCcEEE----ccCCCChHHHHHHHH
Q 022271 80 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGD-RDIPIIA----AGGIVDARGYVAALS 154 (300)
Q Consensus 80 ~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~-~~iPVia----aGGI~~g~~v~aal~ 154 (300)
++.+..+. +.|.+++||| ..+..+ ...|...+- -..|+.+++.+++. .++||-+ ...+-+.-+.+..+.
T Consensus 92 a~lv~~y~-D~idlNcGCP-q~~a~~-g~yGa~L~~---~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e 165 (358)
T KOG2335|consen 92 ARLVQPYC-DGIDLNCGCP-QKVAKR-GGYGAFLMD---NPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLE 165 (358)
T ss_pred HHHhhhhc-CcccccCCCC-HHHHhc-CCccceecc---CHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHH
Confidence 55555554 9999999997 444443 234444432 23566666655532 2455321 233334444444443
Q ss_pred -CCCcEEEe
Q 022271 155 -LGAQGICL 162 (300)
Q Consensus 155 -lGAdgV~~ 162 (300)
.|++-..+
T Consensus 166 ~aG~~~ltV 174 (358)
T KOG2335|consen 166 DAGVSLLTV 174 (358)
T ss_pred hCCCcEEEE
Confidence 67776655
No 480
>PLN02389 biotin synthase
Probab=62.69 E-value=1.5e+02 Score=28.47 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=31.9
Q ss_pred EEccCCCChHH-HHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 138 IAAGGIVDARG-YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 138 iaaGGI~~g~~-v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
+.+|=+.-+.+ -..+|..||+.+++|--||.|.-.... .-.++|.+.
T Consensus 303 i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~-~d~~~~~~l 350 (379)
T PLN02389 303 LSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFD-ADQAMFKEL 350 (379)
T ss_pred ccccccccChhHHHHHHHhCCCEEEECCcccCCCCCChH-HHHHHHHHc
Confidence 44454444555 578899999999999998888765443 345556554
No 481
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=62.45 E-value=73 Score=26.75 Aligned_cols=81 Identities=21% Similarity=0.172 Sum_probs=46.4
Q ss_pred HHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 80 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 80 ~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.+.+.+.+++++.-. ..++..+..-.|+++-.. .+ -..++++.+. --.+..-...+.+++.++...|+|.
T Consensus 49 ~~~~~~~~~~liin~----~~~la~~~~~dGvHl~~~--~~-~~~~~r~~~~---~~~~ig~S~h~~~e~~~a~~~g~dY 118 (180)
T PF02581_consen 49 AELCQKYGVPLIIND----RVDLALELGADGVHLGQS--DL-PPAEARKLLG---PDKIIGASCHSLEEAREAEELGADY 118 (180)
T ss_dssp HHHHHHTTGCEEEES-----HHHHHHCT-SEEEEBTT--SS-SHHHHHHHHT---TTSEEEEEESSHHHHHHHHHCTTSE
T ss_pred HHHhhcceEEEEecC----CHHHHHhcCCCEEEeccc--cc-chHHhhhhcc---cceEEEeecCcHHHHHHhhhcCCCE
Confidence 334445667666553 233444333334444321 12 2345555442 1234556699999999999999999
Q ss_pred EEeccccccCc
Q 022271 160 ICLGTRFVASE 170 (300)
Q Consensus 160 V~~GT~fl~t~ 170 (300)
|.+|.-|-...
T Consensus 119 v~~gpvf~T~s 129 (180)
T PF02581_consen 119 VFLGPVFPTSS 129 (180)
T ss_dssp EEEETSS--SS
T ss_pred EEECCccCCCC
Confidence 99999887653
No 482
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=62.41 E-value=1.3e+02 Score=27.63 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=80.5
Q ss_pred cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC----C-cHH---HHH-HHHHcC-CcEEEE
Q 022271 24 GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF----P-HNE---NIK-AILSEK-VAVLQV 93 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~----~-~~~---~~~-~~~e~g-~~~i~~ 93 (300)
..++... ++.++.++-+- +..+.+.++..++...+. +.|+-+++.... + ... .++ .+.+.+ +|++.-
T Consensus 4 ~~~~l~~-A~~~~yav~Af-n~~n~e~~~avi~aAe~~-~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lh 80 (282)
T TIGR01859 4 GKEILQK-AKKEGYAVGAF-NFNNLEWTQAILEAAEEE-NSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALH 80 (282)
T ss_pred HHHHHHH-HHHCCceEEEE-EECCHHHHHHHHHHHHHh-CCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEE
Confidence 3344443 33344443322 345677777777666553 567666554321 1 111 122 222344 555432
Q ss_pred -cCCCCcHHHHHHHHHCCCeEeecc----C---hhchHHHHHHhhCCCCCcEEE---------------ccCCCChHHHH
Q 022271 94 -SWGEYSEELVLEAHSAGVKVVPQD----G---LISLLPMVVDLIGDRDIPIIA---------------AGGIVDARGYV 150 (300)
Q Consensus 94 -~~G~~~~~~v~~~~~~G~~v~~~~----~---~~~ll~~v~~~~~~~~iPVia---------------aGGI~~g~~v~ 150 (300)
..|. ..+.+.++-+.|...+..+ + .+.+..++++..+..+++|-+ .....|++++.
T Consensus 81 lDH~~-~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~ 159 (282)
T TIGR01859 81 LDHGS-SYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAE 159 (282)
T ss_pred CCCCC-CHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHH
Confidence 2232 3445555556666544321 1 122223333322211333221 13366999999
Q ss_pred HHHH-CCCcEEE--ecccc-ccCcccCCCHHHHHHHHcCCC
Q 022271 151 AALS-LGAQGIC--LGTRF-VASEESYAHPEYKRKLVEMDK 187 (300)
Q Consensus 151 aal~-lGAdgV~--~GT~f-l~t~Es~~~~~~k~~i~~a~~ 187 (300)
++.. .|+|.+. +||.+ ..+.+....-..-+.|.+..+
T Consensus 160 ~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~ 200 (282)
T TIGR01859 160 QFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN 200 (282)
T ss_pred HHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC
Confidence 9997 8999877 79977 555555566666666665443
No 483
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=62.29 E-value=98 Score=27.67 Aligned_cols=45 Identities=29% Similarity=0.289 Sum_probs=23.6
Q ss_pred chHHHHHHhhCCC-CCcEEEccCCCChH--------HHHH-HHHCCCcEEEeccc
Q 022271 121 SLLPMVVDLIGDR-DIPIIAAGGIVDAR--------GYVA-ALSLGAQGICLGTR 165 (300)
Q Consensus 121 ~ll~~v~~~~~~~-~iPViaaGGI~~g~--------~v~a-al~lGAdgV~~GT~ 165 (300)
..+..+.++++.. .-..+.+-+.+|.. ++.. +...|+++||+-|.
T Consensus 99 e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa 153 (235)
T PF04476_consen 99 EALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTA 153 (235)
T ss_pred HHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecc
Confidence 3444454444321 12234455555553 3333 34589999999664
No 484
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=62.16 E-value=58 Score=29.56 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=55.2
Q ss_pred ccCCccceecCCCCCCCCcHHHHHHHHhCC-ceEEecCCC---C--CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHH
Q 022271 6 MLGFEYGIVQAPLGPDISGPELVAAVANAG-GLGLLRAPD---W--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNEN 79 (300)
Q Consensus 6 ~lg~~~Pii~apM~~g~s~~~la~avs~aG-glG~i~~~~---~--~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~ 79 (300)
..|++.--+.+|- .+..++..-...+. .+-+++..+ . .-++.+.+.++++|+.++.|+.+++=.. ..++
T Consensus 138 ~~gl~~I~lv~p~---t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~--~~e~ 212 (259)
T PF00290_consen 138 KHGLDLIPLVAPT---TPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGIS--TPEQ 212 (259)
T ss_dssp HTT-EEEEEEETT---S-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS---SHHH
T ss_pred HcCCeEEEEECCC---CCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCC--CHHH
Confidence 3455443333342 35556665555544 344332211 1 2367899999999999999998887653 4677
Q ss_pred HHHHHHcCCcEEEEcCCCCcHHHHHHHHH
Q 022271 80 IKAILSEKVAVLQVSWGEYSEELVLEAHS 108 (300)
Q Consensus 80 ~~~~~e~g~~~i~~~~G~~~~~~v~~~~~ 108 (300)
++.+. .++|.|++ |+ .+++.+.+
T Consensus 213 ~~~~~-~~aDGvIV--GS---a~v~~i~~ 235 (259)
T PF00290_consen 213 AKKLA-AGADGVIV--GS---AFVKIIEE 235 (259)
T ss_dssp HHHHH-TTSSEEEE--SH---HHHHHHHH
T ss_pred HHHHH-ccCCEEEE--CH---HHHHHHHH
Confidence 88887 89999988 43 45665554
No 485
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=62.04 E-value=1e+02 Score=27.56 Aligned_cols=86 Identities=12% Similarity=0.177 Sum_probs=57.2
Q ss_pred CCCCCCCcHHHHH---HHHhCCceEEecCCCC-----CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCC
Q 022271 17 PLGPDISGPELVA---AVANAGGLGLLRAPDW-----EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (300)
Q Consensus 17 pM~~g~s~~~la~---avs~aGglG~i~~~~~-----~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~ 88 (300)
.|- -+++..|.. +.-+-|--|++-+||+ .+.+...++++++++.++. -+|.-.....++.++.+.++++
T Consensus 35 ~Mi-~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l--~inaHvGfvdE~~~eklk~~~v 111 (275)
T COG1856 35 HMI-KVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGL--LINAHVGFVDESDLEKLKEELV 111 (275)
T ss_pred Hhc-ccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCe--EEEEEeeeccHHHHHHHHHhcC
Confidence 353 355544443 2345688898866554 2457888999999887643 3454444446889999999999
Q ss_pred cEEEEcCCCCcHHHHHHH
Q 022271 89 AVLQVSWGEYSEELVLEA 106 (300)
Q Consensus 89 ~~i~~~~G~~~~~~v~~~ 106 (300)
+++++.+=. ..+++++.
T Consensus 112 dvvsLDfvg-Dn~vIk~v 128 (275)
T COG1856 112 DVVSLDFVG-DNDVIKRV 128 (275)
T ss_pred cEEEEeecC-ChHHHHHH
Confidence 999987621 35666654
No 486
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=61.91 E-value=90 Score=31.92 Aligned_cols=123 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHHhhcCCcE-----EeeeecCCCcHH-----HHHHHHHcCCcEEEEcCCCC----cH
Q 022271 35 GGLGLLRAPDWEAPDYLRDLIRKTRSLTERPF-----GVGVVLAFPHNE-----NIKAILSEKVAVLQVSWGEY----SE 100 (300)
Q Consensus 35 GglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~-----gvnl~~~~~~~~-----~~~~~~e~g~~~i~~~~G~~----~~ 100 (300)
||.++=.+..|...+..+..-.--+...+.|+ |.|++...++.+ +++.+.+.|++++-+.-.+. ..
T Consensus 47 gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~ 126 (596)
T PRK14042 47 GGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLK 126 (596)
T ss_pred CCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHH
Q ss_pred HHHHHHHHCCCeEeec----------------------------------------cChhchHHHHHHhhCCCCCcEEEc
Q 022271 101 ELVLEAHSAGVKVVPQ----------------------------------------DGLISLLPMVVDLIGDRDIPIIAA 140 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~----------------------------------------~~~~~ll~~v~~~~~~~~iPViaa 140 (300)
..++..++.|.++... .....++..+++.+ ++||-.-
T Consensus 127 ~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~---~ipi~~H 203 (596)
T PRK14042 127 VAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQAT---GLPVHLH 203 (596)
T ss_pred HHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhc---CCEEEEE
Q ss_pred cCCCChHHHHHHHH---CCCcEE
Q 022271 141 GGIVDARGYVAALS---LGAQGI 160 (300)
Q Consensus 141 GGI~~g~~v~aal~---lGAdgV 160 (300)
+-=..|-.++.+++ +|||.|
T Consensus 204 ~Hnt~Gla~an~laAieaGad~i 226 (596)
T PRK14042 204 SHSTSGLASICHYEAVLAGCNHI 226 (596)
T ss_pred eCCCCCcHHHHHHHHHHhCCCEE
No 487
>PRK15108 biotin synthase; Provisional
Probab=61.91 E-value=1.4e+02 Score=28.06 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=32.2
Q ss_pred EEccCCCChHH-HHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCC
Q 022271 138 IAAGGIVDARG-YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMD 186 (300)
Q Consensus 138 iaaGGI~~g~~-v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~ 186 (300)
+.+|=...+.+ ...+|..||+++++|-.++.|. ....+.-.++|.++.
T Consensus 261 i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~-g~~~~~~~~~i~~~g 309 (345)
T PRK15108 261 LSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTP-NPEEDKDLQLFRKLG 309 (345)
T ss_pred ecccHhHhChhhHHHHHHcCCcEEEECCccccCC-CCCHHHHHHHHHHcC
Confidence 33443244444 5678889999999998877666 445566777777654
No 488
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=61.62 E-value=93 Score=31.77 Aligned_cols=87 Identities=11% Similarity=0.147 Sum_probs=55.7
Q ss_pred HHHHHHHhCCceEEe--cCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcC-------
Q 022271 26 ELVAAVANAGGLGLL--RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSW------- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i--~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~------- 95 (300)
+++..+.++|.--+. -..|..+|+++.+.++.+|+..+.|+++-.-..... ....-.++++|++.|..+.
T Consensus 159 ~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG~~~ 238 (593)
T PRK14040 159 DLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMSMTY 238 (593)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccccccc
Confidence 667777777753221 222467999999999999998888877643322221 4456677899999997653
Q ss_pred CCCc-HHHHHHHHHCCCe
Q 022271 96 GEYS-EELVLEAHSAGVK 112 (300)
Q Consensus 96 G~~~-~~~v~~~~~~G~~ 112 (300)
|.++ ..++..++..|..
T Consensus 239 Gn~~le~vv~~L~~~~~~ 256 (593)
T PRK14040 239 GHSATETLVATLEGTERD 256 (593)
T ss_pred cchhHHHHHHHHHhcCCC
Confidence 3332 4555566655543
No 489
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=61.53 E-value=75 Score=31.57 Aligned_cols=85 Identities=16% Similarity=0.261 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHH----C--CCeEeec-----------------------cC---------
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHS----A--GVKVVPQ-----------------------DG--------- 118 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~----~--G~~v~~~-----------------------~~--------- 118 (300)
.+.++..++.++|+|.+||=.- .+-+..+++ + ...++.. .+
T Consensus 177 ~~di~f~~~~~vD~ia~SFV~~-~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~DgImIargDLg~e~g~~ 255 (480)
T cd00288 177 KADLRFGVEQGVDMIFASFVRK-ASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGVEIPAE 255 (480)
T ss_pred HHHHHHHHHcCCCEEEECCCCC-HHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEECcchhhhhcChH
Confidence 4678889999999999998543 333444432 2 3445443 11
Q ss_pred -hhchHHHHHHhhCCCCCcEEEccCCC------------ChHHHHHHHHCCCcEEEe
Q 022271 119 -LISLLPMVVDLIGDRDIPIIAAGGIV------------DARGYVAALSLGAQGICL 162 (300)
Q Consensus 119 -~~~ll~~v~~~~~~~~iPViaaGGI~------------~g~~v~aal~lGAdgV~~ 162 (300)
...+..++.+..+..++|+|.|.=+- .-.|++.+..-|+|+|++
T Consensus 256 ~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmL 312 (480)
T cd00288 256 EVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVML 312 (480)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEE
Confidence 11122333333322478999876542 335788888899999999
No 490
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=61.49 E-value=1.1e+02 Score=30.44 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=56.9
Q ss_pred HHHHHHHhCCceEEe--cCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcC-------
Q 022271 26 ELVAAVANAGGLGLL--RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSW------- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i--~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~------- 95 (300)
+++..+.++|.=.+. -..|..+|+++.+.++.+|+..+.|+++-.-..... ....-.++++|++.|..+.
T Consensus 167 ~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~ga 246 (468)
T PRK12581 167 SLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSEGT 246 (468)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCCCc
Confidence 677777777753322 223468999999999999987777776543322221 4456677899999997653
Q ss_pred CCCc-HHHHHHHHHCCCeE
Q 022271 96 GEYS-EELVLEAHSAGVKV 113 (300)
Q Consensus 96 G~~~-~~~v~~~~~~G~~v 113 (300)
|.++ ..++..++..|...
T Consensus 247 gN~~tE~lv~~L~~~g~~t 265 (468)
T PRK12581 247 SQPATESMYLALKEAGYDI 265 (468)
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 2232 45566666665554
No 491
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=61.28 E-value=1e+02 Score=26.16 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=49.2
Q ss_pred CCCcHHHHHHHH----hCC-ceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC-Cc--HHHHHHHHHcCCcEEE
Q 022271 21 DISGPELVAAVA----NAG-GLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF-PH--NENIKAILSEKVAVLQ 92 (300)
Q Consensus 21 g~s~~~la~avs----~aG-glG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~-~~--~~~~~~~~e~g~~~i~ 92 (300)
.+++++|...+. +.| -+-+++ -+++.+++..+++++....-.-+...... +. ++.++.+.+.+++++.
T Consensus 30 Rv~G~dl~~~l~~~~~~~~~~vfllG----~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~ 105 (177)
T TIGR00696 30 RVAGPDLMEELCQRAGKEKLPIFLYG----GKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVF 105 (177)
T ss_pred ccChHHHHHHHHHHHHHcCCeEEEEC----CCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 566776665554 334 244443 27888888888888764221112221111 11 3457888899999999
Q ss_pred EcCCCCcHH-HHHH
Q 022271 93 VSWGEYSEE-LVLE 105 (300)
Q Consensus 93 ~~~G~~~~~-~v~~ 105 (300)
+..|.|-.+ ++.+
T Consensus 106 VglG~PkQE~~~~~ 119 (177)
T TIGR00696 106 VGLGCPKQEIWMRN 119 (177)
T ss_pred EEcCCcHhHHHHHH
Confidence 999997544 3443
No 492
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=61.22 E-value=10 Score=30.23 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=24.0
Q ss_pred CcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 135 IPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 135 iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
|+|...|-| +++=+.+||.-|||||.++-
T Consensus 33 Irv~CsGrv-n~~fvl~Al~~GaDGV~v~G 61 (132)
T COG1908 33 IRVMCSGRV-NPEFVLKALRKGADGVLVAG 61 (132)
T ss_pred EEeeccCcc-CHHHHHHHHHcCCCeEEEec
Confidence 566666665 88899999999999999963
No 493
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=61.12 E-value=89 Score=28.35 Aligned_cols=85 Identities=20% Similarity=0.288 Sum_probs=55.0
Q ss_pred cccCCccceecCCCCCCCCcHHHHHHHHhCC-ceEEecCCC---C--CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHH
Q 022271 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAG-GLGLLRAPD---W--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNE 78 (300)
Q Consensus 5 ~~lg~~~Pii~apM~~g~s~~~la~avs~aG-glG~i~~~~---~--~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~ 78 (300)
+..|++.=.+.+|= .+..++..-...+. .+-+++..+ . .-++.+++.++++|+.++.|+.|++=.. ..+
T Consensus 141 ~~~gi~~I~lv~Pt---T~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~--~~e 215 (263)
T CHL00200 141 NLYNIELILLIAPT---SSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGIS--TSE 215 (263)
T ss_pred HHcCCCEEEEECCC---CCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcC--CHH
Confidence 34565443334442 24456666556665 344333211 1 2357789999999999999998876542 468
Q ss_pred HHHHHHHcCCcEEEEc
Q 022271 79 NIKAILSEKVAVLQVS 94 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~ 94 (300)
+++.+.+.|+|.|++.
T Consensus 216 ~~~~~~~~GADGvVVG 231 (263)
T CHL00200 216 QIKQIKGWNINGIVIG 231 (263)
T ss_pred HHHHHHhcCCCEEEEC
Confidence 8999999999999883
No 494
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=60.94 E-value=1.3e+02 Score=28.69 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=57.8
Q ss_pred CCCcH----HHHHHHHhCCceEE--ecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEE
Q 022271 21 DISGP----ELVAAVANAGGLGL--LRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQV 93 (300)
Q Consensus 21 g~s~~----~la~avs~aGglG~--i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~ 93 (300)
+-+++ +++.++.++|.--+ --+.|..+|+++.+.++.+++..+.|+++-.-..... ....-.++++|++.|..
T Consensus 140 ~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~ 219 (378)
T PRK11858 140 SRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAKQVHT 219 (378)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCCEEEE
Confidence 45665 44555566775332 2223468999999999999987777776644322221 34556677899999976
Q ss_pred cC-------CCC-cHHHHHHHH-HCCCeE
Q 022271 94 SW-------GEY-SEELVLEAH-SAGVKV 113 (300)
Q Consensus 94 ~~-------G~~-~~~~v~~~~-~~G~~v 113 (300)
+. |++ ..+++..++ ..|...
T Consensus 220 tv~GlGeraGNa~lE~vv~~L~~~~g~~~ 248 (378)
T PRK11858 220 TVNGLGERAGNAALEEVVMALKYLYGIDL 248 (378)
T ss_pred eeccccccccCccHHHHHHHHHHHhCCCC
Confidence 54 333 345666666 356554
No 495
>PLN02417 dihydrodipicolinate synthase
Probab=60.89 E-value=1.3e+02 Score=27.29 Aligned_cols=69 Identities=13% Similarity=-0.087 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhcC--CcEEeeeecCCC--cHHHHHHHHHcCCcEEEE
Q 022271 25 PELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFP--HNENIKAILSEKVAVLQV 93 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~~--~P~gvnl~~~~~--~~~~~~~~~e~g~~~i~~ 93 (300)
.+++.-+...|.=|++.+|. .++.++-++.++.+.+..+ .|+-+++..... ..+..+.+.+.|++.+.+
T Consensus 25 ~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~ 102 (280)
T PLN02417 25 DSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALH 102 (280)
T ss_pred HHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEE
Confidence 36667677788777765432 3677777777777766543 466555543222 133455555666666654
No 496
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=60.80 E-value=22 Score=31.85 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred eecCCCcHHHHHHHHHcCCcEEEEcC-------CCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEcc-
Q 022271 70 VVLAFPHNENIKAILSEKVAVLQVSW-------GEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAG- 141 (300)
Q Consensus 70 l~~~~~~~~~~~~~~e~g~~~i~~~~-------G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaG- 141 (300)
+++...+.-..+.+.+.|.+.+.++. |.|.-..+.. .-.+..+.+|.+.+ ++||++.+
T Consensus 12 ~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~-----------~e~~~~~~~I~~~~---~iPv~vD~d 77 (238)
T PF13714_consen 12 VLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTL-----------TEMLAAVRRIARAV---SIPVIVDAD 77 (238)
T ss_dssp EEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-H-----------HHHHHHHHHHHHHS---SSEEEEE-T
T ss_pred EeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCH-----------HHHHHHHHHHHhhh---cCcEEEEcc
Q ss_pred -CCCC-----hHHHHHHHHCCCcEEEe
Q 022271 142 -GIVD-----ARGYVAALSLGAQGICL 162 (300)
Q Consensus 142 -GI~~-----g~~v~aal~lGAdgV~~ 162 (300)
|.++ .+.+.....+|+.|+.+
T Consensus 78 ~GyG~~~~~v~~tv~~~~~aG~agi~I 104 (238)
T PF13714_consen 78 TGYGNDPENVARTVRELERAGAAGINI 104 (238)
T ss_dssp TTSSSSHHHHHHHHHHHHHCT-SEEEE
T ss_pred cccCchhHHHHHHHHHHHHcCCcEEEe
No 497
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=60.80 E-value=1.2e+02 Score=26.79 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=31.9
Q ss_pred hchHHHHHHhhCC-CCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 120 ISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 120 ~~ll~~v~~~~~~-~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
+.++.++.+.++. ..-+-|.+..|.+.+++..++..|||.+-+.
T Consensus 143 ~~~i~~~~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip 187 (220)
T PRK12655 143 IRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAGCQSITLP 187 (220)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECC
Confidence 4566666665531 1235677778999999999999999988764
No 498
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=60.65 E-value=16 Score=34.68 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=41.1
Q ss_pred hhchHHHHHHhhCC---CCCcEEEccCCCChHHHHHHHHCC--CcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVAALSLG--AQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~---~~iPViaaGGI~~g~~v~aal~lG--AdgV~~GT~fl~t~ 170 (300)
...++.++++.++. .++.|+++||| |.+.+++....| .|+.-+||.+..+.
T Consensus 262 ~~~l~~~vr~~Ld~~g~~~vkI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~~~~ 317 (352)
T PRK07188 262 NPELIKALRKALDENGGKHVKIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLLKIN 317 (352)
T ss_pred cHHHHHHHHHHHhhCCCCCcEEEEeCCC-CHHHHHHHHHcCCCccEEecCcccccCc
Confidence 35677777776632 36789999999 788889998899 59999999998875
No 499
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=60.49 E-value=8.8 Score=34.45 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=30.8
Q ss_pred CCcEEEccCCCChHHHHHHHHCC-CcEEEecccccc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVA 168 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~ 168 (300)
++||+-.|+|.. +.+.+.+.++ .||+.+|++-+-
T Consensus 199 ~~~IlYGGSV~~-~N~~~l~~~~~vDG~LVG~Asl~ 233 (242)
T cd00311 199 KVRILYGGSVNP-ENAAELLAQPDIDGVLVGGASLK 233 (242)
T ss_pred ceeEEECCCCCH-HHHHHHhcCCCCCEEEeehHhhC
Confidence 589999999987 9999999998 999999998873
No 500
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=60.44 E-value=1e+02 Score=27.73 Aligned_cols=123 Identities=18% Similarity=0.148 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeec----------CCCcHHHHHHHHHcCCcEEEEcCCCCc------HHHHHHHHHC
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVL----------AFPHNENIKAILSEKVAVLQVSWGEYS------EELVLEAHSA 109 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~----------~~~~~~~~~~~~e~g~~~i~~~~G~~~------~~~v~~~~~~ 109 (300)
++.+.|++.|+-.++. +|.+.+ ....+++++.|.+.|.+.|.+|-|... ..+|+.+++.
T Consensus 51 ~~~~~l~eki~l~~~~-----gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~ 125 (244)
T PF02679_consen 51 YPEEILKEKIDLAHSH-----GVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEE 125 (244)
T ss_dssp STCHHHHHHHHHHHCT-----T-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCT
T ss_pred cCHHHHHHHHHHHHHc-----CCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHC
Confidence 5678888888888874 233332 123478899999999999999877531 3677778889
Q ss_pred CCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc-----cccCcccCCCHHHHHHHHc
Q 022271 110 GVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR-----FVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 110 G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~-----fl~t~Es~~~~~~k~~i~~ 184 (300)
|..|+.-.|--..-..... ++.- =-+.+...|.+||+-|++=.| =+.-.........-+.|++
T Consensus 126 Gf~v~~EvG~K~~~~~~~~-----~~~~-------~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~ 193 (244)
T PF02679_consen 126 GFKVLSEVGKKDPESDFSL-----DPEE-------LIEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIE 193 (244)
T ss_dssp TSEEEEEES-SSHHHHTT-------CCH-------HHHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHT
T ss_pred CCEEeecccCCCchhcccC-----CHHH-------HHHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHH
Confidence 9999876441111110000 0000 013456788999999999554 3332223334444455554
Q ss_pred C
Q 022271 185 M 185 (300)
Q Consensus 185 a 185 (300)
.
T Consensus 194 ~ 194 (244)
T PF02679_consen 194 R 194 (244)
T ss_dssp T
T ss_pred h
Confidence 3
Done!