BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022272
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03943|IM30_PEA Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum
GN=IM30 PE=2 SV=1
Length = 323
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/297 (77%), Positives = 252/297 (84%), Gaps = 17/297 (5%)
Query: 1 MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNG-GVGALKVTRLRIAPS 59
M K QI +G +P P SSS ++KKPL T+ F V LK +RIA
Sbjct: 1 MTTKFQIFSG--LPSAPLQPSSS--------LLKKPLATTLFGTRPVDTLKFRVMRIAKP 50
Query: 60 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
R GGGA+ RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL KMR
Sbjct: 51 VR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMR 104
Query: 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
QATAQVLASQKRLENK KAA+QASE+WYRKAQLALQKGEEDLAREALKRRKS+ADNA++L
Sbjct: 105 QATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSL 164
Query: 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 239
KAQLDQQK+VV+NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA
Sbjct: 165 KAQLDQQKSVVDNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 224
Query: 240 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSK 296
LSAFEKMEEKV+TMESQA++L QLTTDDLEGKFA+LETSSVDDDLANLKKEL+GSSK
Sbjct: 225 LSAFEKMEEKVMTMESQAEALGQLTTDDLEGKFAMLETSSVDDDLANLKKELAGSSK 281
>sp|Q8S0J7|IM30_ORYSJ Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1
Length = 317
Score = 394 bits (1011), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/284 (72%), Positives = 235/284 (82%), Gaps = 15/284 (5%)
Query: 12 TMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGA 71
++ + P P +S+S + L TSF NG V +L++ ++R + +R C
Sbjct: 9 SLRLAPPPPASAS-------FRRTALRTSFLNGSV-SLRLIQVRQSNVNRFKCN------ 54
Query: 72 LNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKR 131
R NL DR +RVVKSYANA+LSSFEDPEKIL+QAVLEMNDDL KMRQATAQVLASQKR
Sbjct: 55 -GIRSNLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKR 113
Query: 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191
LENK KAAEQAS+DWYR+AQLALQKG+EDLAREALKRRKSYADNA++LKAQLDQQK VV
Sbjct: 114 LENKYKAAEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASSLKAQLDQQKGVVE 173
Query: 192 NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVL 251
NLVSNTR+LESKI EA+ KKDTLKARAQSAKT+TKVSEMLGNVNTS ALSAFEKMEEKV+
Sbjct: 174 NLVSNTRVLESKIAEAKQKKDTLKARAQSAKTSTKVSEMLGNVNTSGALSAFEKMEEKVM 233
Query: 252 TMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSS 295
MESQA++L QL TDDLEGKFALLETSSVDDDLA +KKE+SGSS
Sbjct: 234 AMESQAEALGQLATDDLEGKFALLETSSVDDDLAQMKKEISGSS 277
>sp|O80796|VIPP1_ARATH Membrane-associated protein VIPP1, chloroplastic OS=Arabidopsis
thaliana GN=VIPP1 PE=1 SV=1
Length = 330
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/297 (70%), Positives = 246/297 (82%), Gaps = 6/297 (2%)
Query: 1 MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKK-PLTTSFFNGGVGALKVTRLRIAPS 59
MA K+ VTG P+ P SSS S+SS+ C ++ PL TSFF GAL+V LR+A
Sbjct: 1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACD 60
Query: 60 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
+R C G GA MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMR
Sbjct: 61 NRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMR 115
Query: 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
QATAQVLASQK+L+NK KAA+Q+S+DWY++AQLAL KG+EDLAREALKRRKS+ADNA AL
Sbjct: 116 QATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATAL 175
Query: 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 239
K QLDQQK VV+NLVSNTRLLESKIQEA++KKDTL ARA++AKTATKV EM+G VNTS A
Sbjct: 176 KTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTAKTATKVQEMIGTVNTSGA 235
Query: 240 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSK 296
LSAFEKMEEKV+ MES+AD+L Q+ TD+LEGKF +LETSSVDDDLA+LKKELSGSSK
Sbjct: 236 LSAFEKMEEKVMAMESEADALTQIGTDELEGKFQMLETSSVDDDLADLKKELSGSSK 292
>sp|Q55707|Y617_SYNY3 Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0617 PE=3 SV=1
Length = 267
Score = 184 bits (468), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 153/221 (69%), Gaps = 1/221 (0%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M LFDRL RVV++ N ++S EDPEK+LEQAV++M +DLV++RQA A+ +A +KR E +
Sbjct: 1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQR 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
Q ++ W +A+LAL GEE+LAREAL R+KS D A A + QL QQ+ + NL
Sbjct: 61 LNQDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRR 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
N LE+KI EA++KK+ L+ARA++AK ++ + LG + TSSA SAFE+ME KVL ME+
Sbjct: 121 NLAALEAKISEAKTKKNMLQARAKAAKANAELQQTLGGLGTSSATSAFERMENKVLDMEA 180
Query: 256 QADSLNQLTTDDLEGKFALLETSS-VDDDLANLKKELSGSS 295
+ + +L +E +FA LE SS V+D+LA LK ++G +
Sbjct: 181 TSQAAGELAGFGIENQFAQLEASSGVEDELAALKASMAGGA 221
>sp|Q9RUB7|PSPA_DEIRA Phage shock protein A homolog OS=Deinococcus radiodurans (strain
ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC
15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1473 PE=1
SV=1
Length = 223
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 2/223 (0%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M++FDRL+R++++ N ++S EDP KI++QA+ +M R A +A +LE +
Sbjct: 1 MSIFDRLSRLLRANVNDMISKAEDPAKIIDQALRDMRSAYADARNEVAGAMAQAAKLERE 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
+ + ++ +KA+ AL+ G EDLAREAL+R +++ D A Q Q++ V+ L +
Sbjct: 61 AGTNSKLAAEYEKKAEEALRGGSEDLAREALRRAQNHKDLAKGFDEQRTVQQSTVDQLKT 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
R LE+KI E SKK L AR ++A+ + + G A+ AF +ME+KV ME
Sbjct: 121 QLRALEAKIDEMESKKTLLAARQKTAQAGETLDRVSGFSKAGGAMDAFNEMEQKVAGMED 180
Query: 256 QADSLNQLTTD-DLEGKFA-LLETSSVDDDLANLKKELSGSSK 296
+ ++ +L D D + + L VDD LA LK ++ S++
Sbjct: 181 RNKAMGELRNDQDFDAQLKDLGRDKDVDDALAALKAKVQSSNQ 223
>sp|P0AFM8|PSPA_SHIFL Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2
Length = 222
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 117/214 (54%), Gaps = 1/214 (0%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M +F R A +V + NA+L EDP+K++ + EM D LV++R +A+ LA +K+L +
Sbjct: 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
+ A +W KA+LAL K EDLAR AL ++ D +L+ ++ + + +
Sbjct: 61 IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
LE+K+ E R+++ L R Q+A ++ V L + A++ FE E ++ ME+
Sbjct: 121 EIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180
Query: 256 QADSLNQLTTDDLEGKFALLET-SSVDDDLANLK 288
+A+S + L+ +FA L+ ++ + LA LK
Sbjct: 181 EAESHSFGKQKSLDDQFAELKADDAISEQLAQLK 214
>sp|P0AFM6|PSPA_ECOLI Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1
SV=2
Length = 222
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 117/214 (54%), Gaps = 1/214 (0%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M +F R A +V + NA+L EDP+K++ + EM D LV++R +A+ LA +K+L +
Sbjct: 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
+ A +W KA+LAL K EDLAR AL ++ D +L+ ++ + + +
Sbjct: 61 IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
LE+K+ E R+++ L R Q+A ++ V L + A++ FE E ++ ME+
Sbjct: 121 EIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180
Query: 256 QADSLNQLTTDDLEGKFALLET-SSVDDDLANLK 288
+A+S + L+ +FA L+ ++ + LA LK
Sbjct: 181 EAESHSFGKQKSLDDQFAELKADDAISEQLAQLK 214
>sp|P0AFM7|PSPA_ECO57 Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2
Length = 222
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 117/214 (54%), Gaps = 1/214 (0%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M +F R A +V + NA+L EDP+K++ + EM D LV++R +A+ LA +K+L +
Sbjct: 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
+ A +W KA+LAL K EDLAR AL ++ D +L+ ++ + + +
Sbjct: 61 IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
LE+K+ E R+++ L R Q+A ++ V L + A++ FE E ++ ME+
Sbjct: 121 EIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180
Query: 256 QADSLNQLTTDDLEGKFALLET-SSVDDDLANLK 288
+A+S + L+ +FA L+ ++ + LA LK
Sbjct: 181 EAESHSFGKQKSLDDQFAELKADDAISEQLAQLK 214
>sp|P54617|PSPA_BACSU Phage shock protein A homolog OS=Bacillus subtilis (strain 168)
GN=ydjF PE=1 SV=3
Length = 227
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 128/234 (54%), Gaps = 29/234 (12%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLE-- 133
M++ R ++ + NA+L E+PEK+++Q + MN DL K++ TA V+A ++R +
Sbjct: 1 MSIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVKAETAAVMAEEQRAKRE 60
Query: 134 -NKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA-------QLDQ 185
++C+A + E + K ALQ G E AR+ L+R+ S + L+A Q
Sbjct: 61 YHECQADMEKMESYAMK---ALQAGNESDARKFLERKTSLESKLSELQAANQIAATNAAQ 117
Query: 186 QKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLG--NVNTSSALSAF 243
+ + + LVS+ I E ++K+ +KA+ AKT ++++ LG +TS ++SAF
Sbjct: 118 MRKMHDKLVSD-------IGELEARKNMIKAKWAVAKTQERMNK-LGASVSSTSQSMSAF 169
Query: 244 EKMEEKVLTMESQADSLNQLTT------DDLEGKFALLETSSVDDDLANLKKEL 291
+ME+KV QA+++ +L + DL K+ +S VDD+LA LK ++
Sbjct: 170 GRMEDKVNKALDQANAMAELNSAPQDDMADLSAKYDTGGSSQVDDELAALKAKM 223
>sp|O32201|LIAH_BACSU Protein LiaH OS=Bacillus subtilis (strain 168) GN=liaH PE=2 SV=1
Length = 225
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153
L E+P+ +L Q V +M D+ K +Q + + + K + A + + +AQLA
Sbjct: 18 LDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLA 77
Query: 154 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213
GEE+LA++AL K A KA +Q + + +L LE+K+Q+ + KK
Sbjct: 78 FDAGEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQLAALETKLQDVKDKKQA 137
Query: 214 LKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQAD 258
L ARA +AK ++ +++ SA F ++E ++ ME +A+
Sbjct: 138 LIARANAAKAKEHMNTTFDKIDSESAYREFLRIENRIEEMEIRAN 182
>sp|Q9PTG8|TACC3_XENLA Transforming acidic coiled-coil-containing protein 3 OS=Xenopus
laevis GN=tacc3 PE=1 SV=2
Length = 931
Score = 34.7 bits (78), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ-------KR 131
+ + +++ + I ED ++ E A LE+N L + +Q + + + KR
Sbjct: 762 YVEMGKIIAEFEGTITQILEDSQRQKETAKLELNKVLQEKQQVQVDLNSMETSFSELFKR 821
Query: 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191
LE + +A E YRK + AL+K ED K + Y ALKA +++ N N
Sbjct: 822 LEKQKEALE-----GYRKNEEALKKCVEDYLVRIKKEEQRY----QALKAHAEEKLNRAN 872
Query: 192 NLVSNTR 198
+++ R
Sbjct: 873 EEIAHVR 879
>sp|A0JP86|LAMC1_XENTR Laminin subunit gamma-1 OS=Xenopus tropicalis GN=lamc1 PE=2 SV=1
Length = 1592
Score = 34.3 bits (77), Expect = 1.1, Method: Composition-based stats.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 33/213 (15%)
Query: 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149
AN IL+ D +K + L K+ AQ +A NK + AE A +
Sbjct: 1346 ANDILNKLRDFDKRVNDNKTAAEAALRKI-PMIAQTIAEAN---NKTRQAESALGNANAD 1401
Query: 150 AQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209
A+ A K EE A ++K A +A+ D V +L + + ++QEA +
Sbjct: 1402 ARGAKSKAEEAEALANTVQKK-----AATARAEADNTFKEVTDLDGELQDMLQQLQEAEN 1456
Query: 210 KKDTLKARAQS-------AKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSL-- 260
+ +A A+S A ATK +E N N+ +++ +++L+ Q DS+
Sbjct: 1457 QLKKKQAEAESDEKMAEMASNATKDAESNAN-NSKKSVNGVLATIDELLSRLGQLDSVDV 1515
Query: 261 --------------NQLTTDDLEGKFALLETSS 279
NQL DL+ K A L+ SS
Sbjct: 1516 GQLTVLEKTLDDAKNQLRDSDLDRKLAELQESS 1548
>sp|Q19782|IFD2_CAEEL Intermediate filament protein ifd-2 OS=Caenorhabditis elegans
GN=ifd-2 PE=3 SV=1
Length = 443
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 23/136 (16%)
Query: 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDL------AREALKRRKSYADNANALKAQLD 184
R E +AA + EDWY K ++KG E ARE + R +S N + +L
Sbjct: 269 RFEKDSRAARKTWEDWYHKKITEIKKGSESYSSIQNQAREEILRIRSI---VNEFRGKLS 325
Query: 185 QQKNVVNNLV-----------SNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGN 233
+ + L+ N RL E + E + +K R + K + ++ +++ N
Sbjct: 326 DSETINQQLIKRIDDLHFQDKENLRLFEIALNEKENL--VIKMREECTKLSVELDKLVEN 383
Query: 234 -VNTSSALSAFEKMEE 248
+N + ++ + K+ E
Sbjct: 384 QINLRNEINHYRKLME 399
>sp|Q9PQF2|DNAK_UREPA Chaperone protein DnaK OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=dnaK PE=3 SV=1
Length = 603
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 26/204 (12%)
Query: 36 PLTTSFFN-GGVGALKVTRLRIAPSSRSHCYRQGGG---ALNTRMNLFDR-LARVVKSYA 90
PLT S GGV + R P S+S + +++ R+ +R LA K
Sbjct: 369 PLTLSIETMGGVATPLIPRNTKIPVSKSQIFSTAADNQPSVDIRIVQGERSLAADNKLLG 428
Query: 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150
N LS E + + Q ++ N D + A+ L +QK K ++ S+D K
Sbjct: 429 NFELSGIEPAPRGVPQIEIKFNIDANGIMSVNAKDLKTQKETSITIKDSQGLSQDEIDK- 487
Query: 151 QLALQKGEEDLAREA-LKRRKSYADNANALKAQLDQ----------QKNVVNNLVSNTRL 199
+++ EE+ ++A +K + + A++L QL+Q QK+V N + +
Sbjct: 488 --MIKEAEENKEKDAKVKHERELVNRADSLINQLEQVSKTENVPQEQKDVFNKQIED--- 542
Query: 200 LESKIQEARSKKDTLKARAQSAKT 223
+ AR +D +K A+ K
Sbjct: 543 ----LTNARDAQDYVKLEAEVKKV 562
>sp|B1AIX8|DNAK_UREP2 Chaperone protein DnaK OS=Ureaplasma parvum serovar 3 (strain ATCC
27815 / 27 / NCTC 11736) GN=dnaK PE=3 SV=1
Length = 603
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 26/204 (12%)
Query: 36 PLTTSFFN-GGVGALKVTRLRIAPSSRSHCYRQGGG---ALNTRMNLFDR-LARVVKSYA 90
PLT S GGV + R P S+S + +++ R+ +R LA K
Sbjct: 369 PLTLSIETMGGVATPLIPRNTKIPVSKSQIFSTAADNQPSVDIRIVQGERSLAADNKLLG 428
Query: 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150
N LS E + + Q ++ N D + A+ L +QK K ++ S+D K
Sbjct: 429 NFELSGIEPAPRGVPQIEIKFNIDANGIMSVNAKDLKTQKETSITIKDSQGLSQDEIDK- 487
Query: 151 QLALQKGEEDLAREA-LKRRKSYADNANALKAQLDQ----------QKNVVNNLVSNTRL 199
+++ EE+ ++A +K + + A++L QL+Q QK+V N + +
Sbjct: 488 --MIKEAEENKEKDAKVKHERELVNRADSLINQLEQVSKTENVPQEQKDVFNKQIED--- 542
Query: 200 LESKIQEARSKKDTLKARAQSAKT 223
+ AR +D +K A+ K
Sbjct: 543 ----LTNARDAQDYVKLEAEVKKV 562
>sp|Q8TXI4|RAD50_METKA DNA double-strand break repair Rad50 ATPase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=rad50 PE=3 SV=1
Length = 876
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALS 241
+L + K L RLLE+KI+ + ++D L+ + K A + + LG+V S
Sbjct: 231 ELREAKREFERLEGELRLLENKIESLKGRRDDLRKLVEEGKEAERELQRLGDVP-----S 285
Query: 242 AFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELS 292
++E + + + + L L DDL LE S +++L +K+EL
Sbjct: 286 KVRELENEEAELRRRIEELRNL-LDDLRSLRNRLE--SAEEELEGVKRELE 333
>sp|P34011|ATI_VAR67 A-type inclusion protein A25 homolog OS=Variola virus (isolate
Human/India/Ind3/1967) GN=A28L PE=3 SV=1
Length = 702
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 150 AQLALQKGEEDLAREALKRRKSYAD---------NANALKAQLDQQKNVVNNLVSNTRLL 200
+++ L++ ++DL E KRR + + K +LD+ K ++N VS L
Sbjct: 534 SRMWLKQRDDDLRAEIDKRRNVEWELSKLRRDIKECDKYKEELDKAKTTISNYVSRISTL 593
Query: 201 ESKIQEARSKKDTLKA 216
ES+I + + +DTL A
Sbjct: 594 ESEIAKYQQDRDTLSA 609
>sp|P24759|ATI_VACCW A-type inclusion protein A25 OS=Vaccinia virus (strain Western
Reserve) GN=VACWR148 PE=1 SV=2
Length = 725
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 25/153 (16%)
Query: 79 FDRLARVVKSYANAILSSFEDPEKILE---QAVLEMNDDLVKMRQATAQV-----LASQK 130
DRL + +K + + I + +D +LE + + E+ + L + R+ +++
Sbjct: 462 IDRLTKEIKEHRD-IQNGTDDGSDLLEIDKKTIRELRESLDREREMRSELEKELDTIRNG 520
Query: 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR---------KSYADNANALKA 181
+++ C+ + S W L++ ++DL E KRR + + K
Sbjct: 521 KVDGSCQRELELSRMW-------LKQRDDDLRAEIDKRRNVEWELSRLRRDIKECDKYKE 573
Query: 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214
LD+ K ++N VS LES+I + + +DTL
Sbjct: 574 DLDKAKTTISNYVSKISTLESEIAKYQQDRDTL 606
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.122 0.316
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,165,994
Number of Sequences: 539616
Number of extensions: 3147174
Number of successful extensions: 18057
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 778
Number of HSP's that attempted gapping in prelim test: 17194
Number of HSP's gapped (non-prelim): 1532
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)