Query 022272
Match_columns 300
No_of_seqs 160 out of 807
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:20:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10698 phage shock protein P 100.0 5.5E-48 1.2E-52 349.0 31.6 220 76-295 1-221 (222)
2 TIGR02977 phageshock_pspA phag 100.0 3E-46 6.4E-51 337.2 31.3 218 76-293 1-219 (219)
3 COG1842 PspA Phage shock prote 100.0 1.6E-43 3.5E-48 319.5 30.9 218 76-293 1-222 (225)
4 PF04012 PspA_IM30: PspA/IM30 100.0 4.3E-43 9.4E-48 316.1 31.0 217 77-293 1-221 (221)
5 PTZ00446 vacuolar sorting prot 98.7 4.3E-06 9.3E-11 74.2 19.7 144 127-284 34-182 (191)
6 KOG1656 Protein involved in gl 98.1 0.00037 7.9E-09 62.0 17.2 137 135-286 36-180 (221)
7 PF03357 Snf7: Snf7; InterPro 98.1 0.00018 3.8E-09 61.6 14.9 155 121-294 2-156 (171)
8 PTZ00464 SNF-7-like protein; P 97.9 0.0042 9.1E-08 56.2 20.3 91 158-262 59-149 (211)
9 KOG2911 Uncharacterized conser 97.8 0.0024 5.3E-08 62.6 18.7 149 115-276 228-383 (439)
10 TIGR02977 phageshock_pspA phag 97.4 0.039 8.5E-07 49.9 20.2 164 111-288 29-201 (219)
11 PF04012 PspA_IM30: PspA/IM30 97.2 0.045 9.7E-07 49.2 17.5 53 171-223 102-154 (221)
12 KOG0971 Microtubule-associated 97.1 0.4 8.8E-06 51.3 25.9 109 94-205 245-356 (1243)
13 COG1842 PspA Phage shock prote 97.0 0.3 6.4E-06 44.7 22.3 171 109-290 27-206 (225)
14 PRK04863 mukB cell division pr 96.9 0.43 9.4E-06 54.4 25.7 134 78-214 258-395 (1486)
15 KOG0996 Structural maintenance 96.8 0.18 3.9E-06 55.1 20.8 146 104-262 804-963 (1293)
16 PRK10698 phage shock protein P 96.8 0.23 4.9E-06 45.2 18.4 60 165-224 97-156 (222)
17 PF08317 Spc7: Spc7 kinetochor 96.4 0.41 8.8E-06 45.9 18.3 139 104-257 154-292 (325)
18 PRK09039 hypothetical protein; 96.2 0.93 2E-05 43.9 20.0 42 174-215 123-164 (343)
19 PRK09039 hypothetical protein; 96.2 0.98 2.1E-05 43.7 19.8 53 172-224 135-187 (343)
20 PRK02224 chromosome segregatio 96.0 2.8 6E-05 45.1 25.2 95 115-215 525-619 (880)
21 TIGR00606 rad50 rad50. This fa 95.8 1.7 3.6E-05 49.2 22.3 55 165-219 879-933 (1311)
22 PF09726 Macoilin: Transmembra 95.8 1 2.2E-05 47.6 19.2 188 104-291 430-652 (697)
23 KOG0963 Transcription factor/C 95.6 3 6.5E-05 43.2 21.2 104 107-210 122-225 (629)
24 PF00261 Tropomyosin: Tropomyo 95.6 1.4 3.1E-05 40.2 17.4 53 170-222 144-196 (237)
25 COG1196 Smc Chromosome segrega 95.5 2.1 4.6E-05 47.8 21.7 17 245-261 946-962 (1163)
26 KOG0994 Extracellular matrix g 95.5 1.9 4.1E-05 47.6 19.9 86 101-198 1565-1650(1758)
27 PF08317 Spc7: Spc7 kinetochor 95.5 1.8 3.8E-05 41.6 18.3 107 102-217 145-252 (325)
28 KOG0994 Extracellular matrix g 95.3 6.3 0.00014 43.8 23.4 128 71-205 1501-1636(1758)
29 PRK04863 mukB cell division pr 95.2 5.4 0.00012 45.8 23.7 94 125-219 291-386 (1486)
30 PRK02224 chromosome segregatio 95.2 3.7 8E-05 44.2 21.7 56 162-218 560-615 (880)
31 COG4372 Uncharacterized protei 95.2 3.5 7.7E-05 40.5 22.8 50 102-151 119-168 (499)
32 PRK04778 septation ring format 95.2 4.5 9.8E-05 41.7 22.9 52 98-149 281-332 (569)
33 smart00787 Spc7 Spc7 kinetocho 95.1 2.7 5.8E-05 40.3 18.1 140 102-256 147-286 (312)
34 PF12128 DUF3584: Protein of u 95.1 5.6 0.00012 44.8 23.0 23 103-125 604-626 (1201)
35 PRK11637 AmiB activator; Provi 94.8 3.1 6.7E-05 41.2 18.5 35 176-210 91-125 (428)
36 KOG0161 Myosin class II heavy 94.7 6.5 0.00014 46.1 22.6 49 105-153 963-1011(1930)
37 KOG0971 Microtubule-associated 94.7 8 0.00017 42.0 22.8 118 68-188 359-476 (1243)
38 KOG2910 Uncharacterized conser 94.7 3 6.6E-05 37.1 19.9 66 127-192 23-88 (209)
39 PF12128 DUF3584: Protein of u 94.6 10 0.00022 42.8 23.6 58 102-159 624-681 (1201)
40 PF00261 Tropomyosin: Tropomyo 94.3 4.1 8.8E-05 37.2 21.8 118 96-218 47-164 (237)
41 PRK11637 AmiB activator; Provi 94.2 6.5 0.00014 38.9 22.8 41 104-144 80-120 (428)
42 KOG0804 Cytoplasmic Zn-finger 94.0 3.6 7.8E-05 41.1 16.2 122 96-218 329-451 (493)
43 PRK04778 septation ring format 93.7 9.7 0.00021 39.3 22.1 37 236-273 443-479 (569)
44 PHA02562 46 endonuclease subun 93.4 6 0.00013 40.1 17.7 21 240-260 298-318 (562)
45 KOG0250 DNA repair protein RAD 93.3 15 0.00033 40.5 24.9 119 101-223 677-797 (1074)
46 KOG0977 Nuclear envelope prote 93.3 5.6 0.00012 40.9 16.8 97 113-209 92-190 (546)
47 PF12718 Tropomyosin_1: Tropom 93.0 5.1 0.00011 34.0 18.3 105 99-212 14-118 (143)
48 TIGR03319 YmdA_YtgF conserved 92.9 4.5 9.6E-05 41.4 15.7 60 90-149 23-84 (514)
49 PRK10884 SH3 domain-containing 92.8 3 6.5E-05 37.6 12.8 57 177-233 121-177 (206)
50 KOG1655 Protein involved in va 92.7 5.1 0.00011 35.9 13.7 22 161-182 64-85 (218)
51 PRK12704 phosphodiesterase; Pr 92.5 14 0.0003 37.9 18.7 49 100-148 40-89 (520)
52 PHA02562 46 endonuclease subun 92.3 14 0.00031 37.4 22.6 24 191-214 302-325 (562)
53 KOG0976 Rho/Rac1-interacting s 92.3 19 0.00041 38.8 20.5 22 200-221 415-436 (1265)
54 PF09726 Macoilin: Transmembra 92.2 18 0.00039 38.5 20.4 37 97-133 451-487 (697)
55 PF15619 Lebercilin: Ciliary p 92.2 8.1 0.00018 34.5 17.8 72 81-152 36-107 (194)
56 KOG0250 DNA repair protein RAD 92.2 22 0.00047 39.3 20.6 106 106-215 337-442 (1074)
57 PF15290 Syntaphilin: Golgi-lo 91.8 0.9 2E-05 42.7 8.3 18 207-224 157-174 (305)
58 TIGR03007 pepcterm_ChnLen poly 91.7 16 0.00034 36.7 20.8 52 165-216 202-268 (498)
59 PF10168 Nup88: Nuclear pore c 91.6 21 0.00046 38.1 21.1 146 77-223 504-667 (717)
60 TIGR00606 rad50 rad50. This fa 91.5 29 0.00064 39.5 24.4 44 174-217 977-1020(1311)
61 COG1579 Zn-ribbon protein, pos 91.3 12 0.00026 34.6 19.6 126 89-214 14-143 (239)
62 PF06160 EzrA: Septation ring 91.3 20 0.00043 37.0 19.4 153 102-257 104-294 (560)
63 PF00769 ERM: Ezrin/radixin/mo 91.2 12 0.00026 34.5 16.3 107 102-209 8-117 (246)
64 PF13166 AAA_13: AAA domain 91.1 16 0.00035 38.2 17.9 63 172-234 408-471 (712)
65 COG1382 GimC Prefoldin, chaper 90.7 8.5 0.00018 31.8 13.5 99 107-212 7-108 (119)
66 TIGR02231 conserved hypothetic 90.5 3.4 7.4E-05 42.0 11.9 31 107-137 72-102 (525)
67 PF00038 Filament: Intermediat 90.4 16 0.00034 34.3 17.6 102 85-205 29-134 (312)
68 KOG0804 Cytoplasmic Zn-finger 90.4 12 0.00026 37.5 14.8 98 104-202 352-449 (493)
69 TIGR01843 type_I_hlyD type I s 90.3 18 0.00039 34.9 17.9 13 43-55 51-63 (423)
70 PRK03918 chromosome segregatio 90.2 30 0.00064 37.2 24.6 18 78-95 125-142 (880)
71 TIGR01843 type_I_hlyD type I s 89.9 19 0.00042 34.7 19.2 18 131-148 148-165 (423)
72 KOG3230 Vacuolar assembly/sort 89.7 15 0.00032 33.0 18.3 108 96-235 6-113 (224)
73 PF10174 Cast: RIM-binding pro 89.6 34 0.00073 36.9 20.4 123 90-218 229-352 (775)
74 TIGR01005 eps_transp_fam exopo 89.4 21 0.00046 37.9 17.2 113 106-226 288-407 (754)
75 KOG0996 Structural maintenance 89.4 41 0.00089 37.7 20.1 45 110-154 381-425 (1293)
76 PF10168 Nup88: Nuclear pore c 89.3 10 0.00022 40.4 14.6 78 78-155 540-621 (717)
77 PF06008 Laminin_I: Laminin Do 89.3 18 0.00039 33.4 18.0 111 102-216 90-206 (264)
78 TIGR03752 conj_TIGR03752 integ 89.1 6.1 0.00013 39.9 12.0 53 107-159 60-112 (472)
79 KOG1029 Endocytic adaptor prot 88.9 36 0.00078 36.6 17.6 44 176-219 418-461 (1118)
80 KOG0977 Nuclear envelope prote 88.9 31 0.00067 35.6 18.6 16 279-294 374-389 (546)
81 KOG0979 Structural maintenance 88.5 40 0.00087 37.1 18.1 140 110-256 185-326 (1072)
82 KOG0161 Myosin class II heavy 88.5 60 0.0013 38.5 21.7 49 171-219 1495-1543(1930)
83 PF03148 Tektin: Tektin family 88.5 26 0.00057 34.4 17.7 129 78-206 223-363 (384)
84 PF09730 BicD: Microtubule-ass 88.0 41 0.00089 35.9 19.8 117 95-216 275-394 (717)
85 KOG0982 Centrosomal protein Nu 87.9 31 0.00067 34.6 15.6 97 122-218 245-348 (502)
86 PRK03918 chromosome segregatio 87.7 43 0.00094 35.9 20.6 31 172-202 671-701 (880)
87 TIGR00634 recN DNA repair prot 87.3 38 0.00082 34.9 21.2 78 104-184 159-236 (563)
88 PF10046 BLOC1_2: Biogenesis o 87.0 13 0.00029 29.3 13.1 95 78-206 4-98 (99)
89 TIGR03185 DNA_S_dndD DNA sulfu 86.7 44 0.00096 35.0 18.9 80 130-212 394-473 (650)
90 PF12718 Tropomyosin_1: Tropom 86.5 19 0.00041 30.5 17.7 12 244-255 125-136 (143)
91 TIGR03017 EpsF chain length de 86.1 36 0.00079 33.4 15.8 26 197-222 344-369 (444)
92 PRK15422 septal ring assembly 86.1 5.6 0.00012 30.5 7.5 61 96-156 15-75 (79)
93 PRK00846 hypothetical protein; 85.8 8.4 0.00018 29.4 8.4 54 169-222 8-61 (77)
94 PF12325 TMF_TATA_bd: TATA ele 85.7 19 0.00041 29.8 15.4 43 104-146 21-63 (120)
95 PF06785 UPF0242: Uncharacteri 85.5 20 0.00044 34.7 12.6 57 161-217 167-223 (401)
96 PRK07720 fliJ flagellar biosyn 85.5 20 0.00044 29.9 16.6 95 112-212 15-109 (146)
97 PF04102 SlyX: SlyX; InterPro 85.3 6.6 0.00014 29.1 7.6 50 172-221 2-51 (69)
98 COG3883 Uncharacterized protei 85.1 34 0.00073 32.1 20.3 60 99-158 52-115 (265)
99 TIGR01010 BexC_CtrB_KpsE polys 84.9 38 0.00082 32.6 17.6 53 99-153 141-196 (362)
100 COG1579 Zn-ribbon protein, pos 84.9 33 0.00071 31.8 19.8 113 104-217 15-132 (239)
101 COG4942 Membrane-bound metallo 84.8 45 0.00098 33.3 20.6 111 94-212 136-248 (420)
102 TIGR02680 conserved hypothetic 84.6 82 0.0018 36.2 23.4 46 172-217 338-383 (1353)
103 PRK04406 hypothetical protein; 84.5 12 0.00025 28.4 8.7 50 171-220 8-57 (75)
104 PRK00736 hypothetical protein; 84.2 8.7 0.00019 28.5 7.8 49 172-220 3-51 (68)
105 PLN02718 Probable galacturonos 84.2 5.7 0.00012 41.3 9.0 109 99-211 158-266 (603)
106 PRK09343 prefoldin subunit bet 84.1 22 0.00048 29.2 13.2 45 104-148 5-49 (121)
107 PRK04325 hypothetical protein; 84.0 11 0.00025 28.3 8.5 50 171-220 6-55 (74)
108 COG1566 EmrA Multidrug resista 83.9 33 0.00071 33.5 13.7 40 110-149 88-127 (352)
109 PRK00295 hypothetical protein; 83.7 12 0.00026 27.7 8.3 49 172-220 3-51 (68)
110 PF08614 ATG16: Autophagy prot 83.7 30 0.00066 30.5 13.1 52 168-219 131-182 (194)
111 KOG0964 Structural maintenance 83.7 39 0.00085 37.2 15.0 36 172-207 340-375 (1200)
112 PF05701 WEMBL: Weak chloropla 83.6 56 0.0012 33.5 19.6 46 178-223 390-435 (522)
113 CHL00118 atpG ATP synthase CF0 83.6 27 0.00058 29.7 14.3 55 99-153 45-100 (156)
114 PRK08476 F0F1 ATP synthase sub 83.4 26 0.00056 29.4 14.2 46 102-147 34-79 (141)
115 COG2433 Uncharacterized conser 83.3 48 0.001 34.7 15.0 105 118-224 343-465 (652)
116 KOG0249 LAR-interacting protei 83.3 69 0.0015 34.3 17.0 63 165-229 207-269 (916)
117 PF06120 Phage_HK97_TLTM: Tail 83.2 44 0.00095 32.0 18.1 104 111-215 72-175 (301)
118 PF03194 LUC7: LUC7 N_terminus 83.1 15 0.00033 34.1 10.7 83 100-182 84-171 (254)
119 KOG0995 Centromere-associated 82.9 62 0.0014 33.5 20.6 72 91-163 248-322 (581)
120 PRK02793 phi X174 lysis protei 82.7 13 0.00028 27.9 8.2 50 171-220 5-54 (72)
121 PRK02119 hypothetical protein; 82.5 15 0.00032 27.7 8.5 52 169-220 4-55 (73)
122 KOG1029 Endocytic adaptor prot 82.5 78 0.0017 34.3 16.6 51 99-149 451-501 (1118)
123 KOG0249 LAR-interacting protei 82.4 24 0.00051 37.6 12.5 47 163-209 212-258 (916)
124 PF05384 DegS: Sensor protein 82.4 32 0.00069 29.8 20.2 90 104-204 25-114 (159)
125 PRK13729 conjugal transfer pil 82.0 5.9 0.00013 40.0 8.0 50 172-221 74-123 (475)
126 PF13514 AAA_27: AAA domain 82.0 93 0.002 34.8 22.1 94 122-215 738-835 (1111)
127 PF06810 Phage_GP20: Phage min 81.8 19 0.00041 31.0 10.1 64 173-236 26-96 (155)
128 smart00685 DM14 Repeats in fly 81.7 6.9 0.00015 28.4 6.1 44 137-180 2-45 (59)
129 TIGR01005 eps_transp_fam exopo 81.7 77 0.0017 33.7 20.2 9 246-254 357-365 (754)
130 PF05667 DUF812: Protein of un 81.3 74 0.0016 33.3 19.0 41 105-145 327-367 (594)
131 COG3883 Uncharacterized protei 81.1 29 0.00064 32.6 11.7 32 115-146 33-64 (265)
132 PF10498 IFT57: Intra-flagella 80.9 59 0.0013 31.9 17.7 22 238-259 332-353 (359)
133 KOG2685 Cystoskeletal protein 80.9 63 0.0014 32.2 15.6 127 78-204 250-388 (421)
134 PF10186 Atg14: UV radiation r 80.8 46 0.00099 30.5 16.0 37 173-209 69-105 (302)
135 PF13851 GAS: Growth-arrest sp 80.8 42 0.0009 30.0 24.0 127 79-221 7-133 (201)
136 PRK05689 fliJ flagellar biosyn 80.6 32 0.00069 28.6 16.4 96 110-211 13-108 (147)
137 PF05335 DUF745: Protein of un 80.5 42 0.00091 29.9 15.9 47 102-148 70-116 (188)
138 COG3074 Uncharacterized protei 80.5 19 0.00042 27.0 8.2 62 95-156 14-75 (79)
139 smart00787 Spc7 Spc7 kinetocho 80.4 56 0.0012 31.3 20.1 42 110-152 114-155 (312)
140 TIGR03007 pepcterm_ChnLen poly 80.2 68 0.0015 32.1 15.9 31 197-227 357-387 (498)
141 PRK00409 recombination and DNA 80.1 67 0.0015 34.7 15.6 53 104-156 518-570 (782)
142 PF04111 APG6: Autophagy prote 80.0 57 0.0012 31.2 14.2 45 178-222 82-126 (314)
143 TIGR03545 conserved hypothetic 79.8 27 0.00059 36.2 12.1 57 95-152 146-202 (555)
144 PRK11281 hypothetical protein; 79.5 1.2E+02 0.0025 34.4 19.8 115 101-223 58-177 (1113)
145 PRK10869 recombination and rep 79.3 82 0.0018 32.5 21.5 80 104-186 155-234 (553)
146 PRK13454 F0F1 ATP synthase sub 79.1 43 0.00094 29.3 13.9 55 99-153 54-109 (181)
147 PRK10884 SH3 domain-containing 79.0 49 0.0011 29.8 13.1 17 109-125 96-112 (206)
148 COG0497 RecN ATPase involved i 79.0 85 0.0018 32.6 21.7 161 92-258 143-314 (557)
149 PF09730 BicD: Microtubule-ass 78.9 97 0.0021 33.2 20.3 62 91-152 19-80 (717)
150 PF07888 CALCOCO1: Calcium bin 78.5 87 0.0019 32.4 21.3 32 173-204 205-236 (546)
151 PF11180 DUF2968: Protein of u 78.5 49 0.0011 29.6 15.7 84 115-203 100-183 (192)
152 TIGR02231 conserved hypothetic 78.3 27 0.00058 35.5 11.6 35 101-135 73-107 (525)
153 KOG3232 Vacuolar assembly/sort 78.3 48 0.001 29.3 18.0 111 125-260 14-135 (203)
154 PF07888 CALCOCO1: Calcium bin 78.0 90 0.002 32.3 18.9 17 192-208 287-303 (546)
155 cd00632 Prefoldin_beta Prefold 77.7 33 0.00071 27.1 13.1 94 113-213 6-102 (105)
156 PLN02742 Probable galacturonos 77.4 25 0.00053 36.2 10.7 104 105-210 73-176 (534)
157 KOG0933 Structural maintenance 77.4 1.3E+02 0.0027 33.6 19.6 39 177-215 818-856 (1174)
158 PRK09174 F0F1 ATP synthase sub 77.2 54 0.0012 29.4 14.3 55 99-153 76-131 (204)
159 PF10883 DUF2681: Protein of u 76.5 18 0.00039 28.3 7.5 51 190-240 25-75 (87)
160 PF11932 DUF3450: Protein of u 76.2 42 0.0009 30.8 11.2 47 168-214 57-103 (251)
161 PLN02829 Probable galacturonos 76.1 15 0.00033 38.4 8.9 106 101-210 178-283 (639)
162 KOG0946 ER-Golgi vesicle-tethe 75.9 1E+02 0.0022 33.5 14.9 30 124-153 748-777 (970)
163 PF15112 DUF4559: Domain of un 75.9 77 0.0017 30.4 12.9 111 99-211 182-304 (307)
164 KOG2391 Vacuolar sorting prote 75.6 83 0.0018 30.7 19.0 111 32-158 169-284 (365)
165 KOG0980 Actin-binding protein 75.4 1.3E+02 0.0029 32.9 19.8 95 122-217 412-509 (980)
166 PF10481 CENP-F_N: Cenp-F N-te 75.2 39 0.00086 31.9 10.6 57 159-215 10-66 (307)
167 PRK10476 multidrug resistance 75.2 78 0.0017 30.1 15.1 17 107-123 87-103 (346)
168 PF04102 SlyX: SlyX; InterPro 75.1 19 0.00041 26.6 7.1 47 169-215 6-52 (69)
169 PRK06975 bifunctional uroporph 74.9 91 0.002 32.9 14.6 40 161-200 372-411 (656)
170 PRK03947 prefoldin subunit alp 74.8 47 0.001 27.5 13.9 43 105-147 5-47 (140)
171 PF05266 DUF724: Protein of un 74.7 62 0.0013 28.8 12.9 34 67-107 41-74 (190)
172 PF05816 TelA: Toxic anion res 74.5 84 0.0018 30.2 16.0 54 76-129 72-125 (333)
173 PRK00295 hypothetical protein; 74.3 30 0.00065 25.6 7.9 46 169-214 7-52 (68)
174 PF05529 Bap31: B-cell recepto 73.9 41 0.00089 29.4 10.2 32 171-202 158-189 (192)
175 TIGR02338 gimC_beta prefoldin, 73.8 44 0.00096 26.7 13.9 100 108-214 5-107 (110)
176 PLN02910 polygalacturonate 4-a 73.7 21 0.00046 37.4 9.3 107 101-211 192-298 (657)
177 PF04111 APG6: Autophagy prote 73.5 87 0.0019 30.0 14.8 27 188-214 106-132 (314)
178 PF05103 DivIVA: DivIVA protei 73.3 1.1 2.4E-05 36.6 -0.0 49 104-152 23-71 (131)
179 KOG1003 Actin filament-coating 73.1 71 0.0015 28.8 15.0 50 103-152 106-155 (205)
180 PF06637 PV-1: PV-1 protein (P 73.0 1E+02 0.0022 30.5 14.8 13 240-252 415-427 (442)
181 PF15619 Lebercilin: Ciliary p 73.0 69 0.0015 28.6 14.4 20 102-121 85-104 (194)
182 TIGR00998 8a0101 efflux pump m 73.0 83 0.0018 29.5 15.0 12 110-121 84-95 (334)
183 TIGR02132 phaR_Bmeg polyhydrox 72.7 69 0.0015 28.4 18.1 114 95-215 4-134 (189)
184 PF09789 DUF2353: Uncharacteri 72.7 95 0.002 30.0 13.3 42 99-147 9-50 (319)
185 PF06156 DUF972: Protein of un 72.7 16 0.00036 29.5 6.7 62 102-163 11-80 (107)
186 COG2900 SlyX Uncharacterized p 72.2 40 0.00086 25.4 8.3 51 170-220 4-54 (72)
187 PRK02793 phi X174 lysis protei 72.1 35 0.00075 25.5 7.9 48 167-214 8-55 (72)
188 PRK06569 F0F1 ATP synthase sub 72.1 65 0.0014 27.8 14.1 60 110-176 45-104 (155)
189 PF08614 ATG16: Autophagy prot 72.0 37 0.00081 29.9 9.5 41 108-148 69-109 (194)
190 PF07926 TPR_MLP1_2: TPR/MLP1/ 72.0 55 0.0012 27.0 17.6 13 176-188 68-80 (132)
191 PF15254 CCDC14: Coiled-coil d 71.7 1.5E+02 0.0033 32.0 16.5 19 82-100 338-356 (861)
192 PF05103 DivIVA: DivIVA protei 71.2 2.7 5.9E-05 34.2 1.9 64 88-151 21-84 (131)
193 PF05478 Prominin: Prominin; 71.2 1.6E+02 0.0034 31.9 19.2 119 96-217 170-289 (806)
194 PRK04406 hypothetical protein; 71.1 37 0.00079 25.7 7.9 46 168-213 12-57 (75)
195 PRK13169 DNA replication intia 71.0 21 0.00047 29.0 7.0 44 103-146 12-55 (110)
196 PTZ00446 vacuolar sorting prot 70.8 78 0.0017 28.3 14.8 8 149-156 68-75 (191)
197 PRK10803 tol-pal system protei 70.7 19 0.00041 33.5 7.6 37 178-214 58-94 (263)
198 PF13094 CENP-Q: CENP-Q, a CEN 70.7 50 0.0011 28.1 9.7 49 110-158 45-93 (160)
199 COG4372 Uncharacterized protei 70.6 1.2E+02 0.0026 30.3 22.3 41 175-215 166-206 (499)
200 PF12761 End3: Actin cytoskele 70.6 80 0.0017 28.3 11.1 24 101-124 98-121 (195)
201 PRK02119 hypothetical protein; 70.0 41 0.00088 25.2 7.9 47 168-214 10-56 (73)
202 PF05377 FlaC_arch: Flagella a 69.9 21 0.00046 25.5 5.9 37 170-206 3-39 (55)
203 PRK00736 hypothetical protein; 69.8 42 0.00091 24.8 7.9 45 169-213 7-51 (68)
204 TIGR01000 bacteriocin_acc bact 69.6 1.2E+02 0.0027 30.1 18.8 29 124-152 169-197 (457)
205 PF05659 RPW8: Arabidopsis bro 69.5 70 0.0015 27.2 10.6 75 135-214 67-143 (147)
206 KOG1656 Protein involved in gl 69.5 89 0.0019 28.3 12.5 20 235-254 158-177 (221)
207 TIGR02971 heterocyst_DevB ABC 69.4 1E+02 0.0022 28.9 15.2 14 40-53 21-34 (327)
208 PF13514 AAA_27: AAA domain 69.3 2E+02 0.0043 32.3 21.7 81 113-193 673-769 (1111)
209 COG2433 Uncharacterized conser 69.2 1.6E+02 0.0034 31.1 14.4 27 124-150 433-459 (652)
210 TIGR00998 8a0101 efflux pump m 69.2 1E+02 0.0022 28.9 13.2 14 131-144 77-90 (334)
211 KOG0964 Structural maintenance 69.1 1.9E+02 0.0042 32.2 23.2 160 53-217 630-814 (1200)
212 PF15070 GOLGA2L5: Putative go 69.1 1.6E+02 0.0034 31.1 18.6 113 99-216 22-136 (617)
213 TIGR01000 bacteriocin_acc bact 68.3 1.3E+02 0.0029 29.9 15.3 15 242-256 292-306 (457)
214 PF06008 Laminin_I: Laminin Do 68.3 99 0.0021 28.5 19.8 55 198-256 181-235 (264)
215 COG4942 Membrane-bound metallo 68.2 1.4E+02 0.003 30.0 22.6 50 99-148 59-108 (420)
216 PF05667 DUF812: Protein of un 68.2 1.6E+02 0.0035 30.9 19.4 49 101-149 330-378 (594)
217 KOG0018 Structural maintenance 68.0 1.7E+02 0.0037 32.7 14.8 106 110-215 321-450 (1141)
218 TIGR02449 conserved hypothetic 67.9 47 0.001 24.6 8.6 48 177-224 3-50 (65)
219 PF10234 Cluap1: Clusterin-ass 67.8 1.1E+02 0.0024 28.8 15.6 58 101-159 164-221 (267)
220 PRK04325 hypothetical protein; 67.8 48 0.001 24.9 7.9 45 169-213 11-55 (74)
221 PF05622 HOOK: HOOK protein; 67.5 1.8 3.8E-05 45.9 0.0 82 104-185 244-326 (713)
222 PF01576 Myosin_tail_1: Myosin 67.0 1.8 3.9E-05 46.9 0.0 138 75-216 230-370 (859)
223 PF08826 DMPK_coil: DMPK coile 67.0 47 0.001 24.2 8.6 37 176-212 20-56 (61)
224 PF08172 CASP_C: CASP C termin 66.6 68 0.0015 29.7 10.3 44 174-217 79-122 (248)
225 PF00038 Filament: Intermediat 66.6 1.1E+02 0.0024 28.5 20.2 8 253-260 295-302 (312)
226 PF10146 zf-C4H2: Zinc finger- 66.5 1.1E+02 0.0023 28.2 16.3 51 166-216 45-95 (230)
227 PF01576 Myosin_tail_1: Myosin 66.2 1.9 4.2E-05 46.7 0.0 212 78-291 606-857 (859)
228 PRK14475 F0F1 ATP synthase sub 66.0 86 0.0019 26.9 14.3 52 99-150 33-85 (167)
229 PF07926 TPR_MLP1_2: TPR/MLP1/ 65.4 77 0.0017 26.2 16.6 18 241-258 105-122 (132)
230 PRK00846 hypothetical protein; 65.1 60 0.0013 24.8 7.9 47 168-214 14-60 (77)
231 PF13805 Pil1: Eisosome compon 65.1 1.3E+02 0.0027 28.5 13.3 174 14-224 13-187 (271)
232 PF02403 Seryl_tRNA_N: Seryl-t 65.0 66 0.0014 25.3 9.4 32 126-157 35-66 (108)
233 PF04728 LPP: Lipoprotein leuc 65.0 49 0.0011 23.8 7.7 11 218-228 38-48 (56)
234 PF02841 GBP_C: Guanylate-bind 64.9 1.2E+02 0.0027 28.4 19.7 10 101-110 175-184 (297)
235 PF09304 Cortex-I_coil: Cortex 64.5 76 0.0016 25.8 14.5 52 166-217 36-87 (107)
236 PF00015 MCPsignal: Methyl-acc 64.1 94 0.002 26.7 12.9 35 80-114 74-108 (213)
237 PRK08476 F0F1 ATP synthase sub 64.0 86 0.0019 26.2 16.0 47 78-124 28-77 (141)
238 PF14662 CCDC155: Coiled-coil 63.7 1.1E+02 0.0024 27.4 17.9 115 88-211 25-139 (193)
239 PF12777 MT: Microtubule-bindi 63.6 1.1E+02 0.0024 29.4 11.6 33 162-194 70-102 (344)
240 PRK15136 multidrug efflux syst 63.5 1.5E+02 0.0033 28.9 14.8 16 159-174 136-151 (390)
241 KOG0978 E3 ubiquitin ligase in 63.1 2.2E+02 0.0047 30.5 15.9 48 103-150 493-540 (698)
242 PF15397 DUF4618: Domain of un 63.0 1.3E+02 0.0029 28.1 16.1 63 66-128 48-110 (258)
243 COG0419 SbcC ATPase involved i 63.0 2.4E+02 0.0051 30.9 21.9 89 131-220 319-407 (908)
244 PRK01156 chromosome segregatio 62.9 2.3E+02 0.005 30.7 20.3 44 170-213 684-727 (895)
245 TIGR02473 flagell_FliJ flagell 62.8 82 0.0018 25.6 20.1 97 110-212 10-106 (141)
246 KOG1103 Predicted coiled-coil 62.7 1.6E+02 0.0035 29.0 16.0 100 98-212 85-184 (561)
247 PF09731 Mitofilin: Mitochondr 62.5 1.9E+02 0.0041 29.7 22.2 24 104-127 249-272 (582)
248 KOG3091 Nuclear pore complex, 62.4 1.4E+02 0.0031 30.4 12.2 50 168-217 342-391 (508)
249 KOG4403 Cell surface glycoprot 62.3 1.4E+02 0.0031 30.1 11.9 54 84-138 238-291 (575)
250 PRK11020 hypothetical protein; 62.2 80 0.0017 26.0 8.6 51 132-182 3-53 (118)
251 TIGR01144 ATP_synt_b ATP synth 61.8 91 0.002 25.8 14.3 11 111-121 31-41 (147)
252 PRK13729 conjugal transfer pil 61.8 43 0.00093 34.0 8.5 46 171-216 80-125 (475)
253 KOG4302 Microtubule-associated 61.7 2.2E+02 0.0048 30.2 14.2 113 90-214 23-136 (660)
254 PF07743 HSCB_C: HSCB C-termin 61.5 63 0.0014 23.8 9.0 76 98-180 2-77 (78)
255 PRK11519 tyrosine kinase; Prov 61.3 2.3E+02 0.0049 30.2 16.7 20 162-181 306-325 (719)
256 PTZ00464 SNF-7-like protein; P 61.2 1.3E+02 0.0028 27.3 15.3 87 204-291 87-173 (211)
257 PF09486 HrpB7: Bacterial type 61.2 1.1E+02 0.0024 26.5 18.5 106 105-214 14-119 (158)
258 PF00769 ERM: Ezrin/radixin/mo 61.1 1.4E+02 0.003 27.6 15.4 22 271-292 177-199 (246)
259 PRK13428 F0F1 ATP synthase sub 61.0 1.9E+02 0.004 29.1 14.3 49 79-127 23-74 (445)
260 PRK11281 hypothetical protein; 60.8 2.9E+02 0.0063 31.3 18.7 41 102-142 124-164 (1113)
261 PHA02571 a-gt.4 hypothetical p 60.5 91 0.002 25.4 9.7 74 95-173 3-76 (109)
262 COG3206 GumC Uncharacterized p 60.4 1.9E+02 0.004 28.9 15.4 32 194-225 372-403 (458)
263 PF07889 DUF1664: Protein of u 60.3 1E+02 0.0022 25.8 10.6 30 177-206 92-121 (126)
264 KOG0796 Spliceosome subunit [R 60.1 1.7E+02 0.0036 28.3 12.5 75 100-174 84-162 (319)
265 PF06120 Phage_HK97_TLTM: Tail 60.1 1.6E+02 0.0036 28.1 14.3 71 76-146 37-114 (301)
266 PF13094 CENP-Q: CENP-Q, a CEN 59.7 92 0.002 26.4 9.2 49 163-211 23-71 (160)
267 KOG0963 Transcription factor/C 59.5 2.3E+02 0.0051 29.8 17.9 75 177-260 185-261 (629)
268 TIGR00293 prefoldin, archaeal 59.4 93 0.002 25.1 9.6 8 132-139 25-32 (126)
269 PLN02769 Probable galacturonos 59.2 69 0.0015 33.7 9.7 113 98-213 173-285 (629)
270 KOG4673 Transcription factor T 58.9 2.6E+02 0.0056 30.1 17.3 137 78-215 475-632 (961)
271 PRK14472 F0F1 ATP synthase sub 58.8 1.2E+02 0.0026 26.1 14.5 16 108-123 72-87 (175)
272 PF02183 HALZ: Homeobox associ 58.5 48 0.001 22.6 5.8 34 173-206 4-37 (45)
273 KOG0612 Rho-associated, coiled 58.3 3.3E+02 0.0071 31.1 23.2 9 12-20 353-361 (1317)
274 PF09789 DUF2353: Uncharacteri 58.1 1.8E+02 0.004 28.1 17.0 141 102-259 68-214 (319)
275 PF09787 Golgin_A5: Golgin sub 58.0 2.2E+02 0.0048 29.0 22.1 30 95-124 105-134 (511)
276 PRK14473 F0F1 ATP synthase sub 57.8 1.2E+02 0.0026 25.8 14.3 56 99-154 31-87 (164)
277 TIGR01069 mutS2 MutS2 family p 57.7 2.8E+02 0.006 30.0 15.8 44 105-148 514-557 (771)
278 PF07851 TMPIT: TMPIT-like pro 57.5 1.4E+02 0.0031 28.9 11.0 81 165-255 2-82 (330)
279 COG2882 FliJ Flagellar biosynt 57.4 1.2E+02 0.0027 25.9 18.9 97 112-214 15-111 (148)
280 PF05010 TACC: Transforming ac 57.3 1.5E+02 0.0032 26.8 20.4 60 165-224 81-140 (207)
281 KOG4674 Uncharacterized conser 57.3 4E+02 0.0087 31.8 23.7 116 108-224 1252-1382(1822)
282 PRK07352 F0F1 ATP synthase sub 57.3 1.3E+02 0.0027 26.0 19.3 54 99-159 42-96 (174)
283 COG3599 DivIVA Cell division i 57.2 1.5E+02 0.0033 26.9 17.9 16 279-294 194-209 (212)
284 COG1730 GIM5 Predicted prefold 57.1 82 0.0018 26.9 8.3 49 171-219 91-139 (145)
285 TIGR03752 conj_TIGR03752 integ 56.7 1.7E+02 0.0036 29.9 11.6 27 119-145 58-84 (472)
286 PF07794 DUF1633: Protein of u 56.7 2.4E+02 0.0053 29.1 12.9 59 101-163 599-657 (790)
287 PRK10803 tol-pal system protei 56.5 63 0.0014 30.0 8.3 46 170-215 57-102 (263)
288 KOG1003 Actin filament-coating 56.4 1.5E+02 0.0033 26.7 19.1 21 102-122 28-48 (205)
289 PF00430 ATP-synt_B: ATP synth 56.2 65 0.0014 25.8 7.5 106 78-185 20-128 (132)
290 PRK13461 F0F1 ATP synthase sub 56.1 1.2E+02 0.0027 25.5 14.3 53 99-151 28-81 (159)
291 PF14942 Muted: Organelle biog 55.8 1.3E+02 0.0028 25.6 16.5 76 77-155 7-94 (145)
292 COG1561 Uncharacterized stress 55.5 1.9E+02 0.0042 27.5 17.5 67 178-253 216-289 (290)
293 PF09325 Vps5: Vps5 C terminal 55.5 1.5E+02 0.0032 26.2 20.0 68 76-147 2-72 (236)
294 PF14915 CCDC144C: CCDC144C pr 55.4 2E+02 0.0043 27.6 16.5 103 111-217 4-106 (305)
295 PF14282 FlxA: FlxA-like prote 55.4 1.1E+02 0.0023 24.5 8.5 14 172-185 24-37 (106)
296 PF15070 GOLGA2L5: Putative go 55.3 2.8E+02 0.006 29.3 18.7 16 132-147 85-100 (617)
297 PRK06231 F0F1 ATP synthase sub 55.0 1.6E+02 0.0034 26.4 14.3 54 99-152 71-125 (205)
298 KOG4643 Uncharacterized coiled 54.8 3.5E+02 0.0076 30.3 17.8 48 102-149 411-458 (1195)
299 PF12329 TMF_DNA_bd: TATA elem 54.6 89 0.0019 23.4 9.6 44 173-216 11-54 (74)
300 KOG2662 Magnesium transporters 54.4 2.4E+02 0.0051 28.2 15.1 127 79-212 178-335 (414)
301 PF10481 CENP-F_N: Cenp-F N-te 54.3 2E+02 0.0043 27.3 15.7 102 106-218 18-125 (307)
302 PF09727 CortBP2: Cortactin-bi 54.2 1.6E+02 0.0035 26.3 15.8 104 97-215 79-182 (192)
303 KOG4438 Centromere-associated 54.1 2.5E+02 0.0053 28.3 16.1 58 102-159 148-205 (446)
304 PF07106 TBPIP: Tat binding pr 53.9 92 0.002 26.6 8.4 25 237-261 112-136 (169)
305 CHL00118 atpG ATP synthase CF0 53.7 1.4E+02 0.003 25.3 16.1 49 78-126 43-94 (156)
306 PF05701 WEMBL: Weak chloropla 53.7 2.7E+02 0.0057 28.6 24.2 50 174-223 211-263 (522)
307 PF14282 FlxA: FlxA-like prote 53.1 1.1E+02 0.0023 24.5 8.1 18 176-193 21-38 (106)
308 PF05276 SH3BP5: SH3 domain-bi 52.9 1.9E+02 0.0041 26.7 17.1 102 98-215 115-218 (239)
309 PF02183 HALZ: Homeobox associ 52.3 72 0.0016 21.7 6.0 38 179-216 3-40 (45)
310 PRK09973 putative outer membra 52.3 69 0.0015 24.9 6.4 46 189-234 25-71 (85)
311 PF06476 DUF1090: Protein of u 51.9 1.3E+02 0.0029 24.5 9.8 52 158-211 61-112 (115)
312 PF02994 Transposase_22: L1 tr 51.8 63 0.0014 31.6 7.8 41 167-207 144-184 (370)
313 PRK14127 cell division protein 51.8 47 0.001 27.0 5.7 35 178-212 34-68 (109)
314 PRK14471 F0F1 ATP synthase sub 51.8 1.5E+02 0.0032 25.1 14.3 53 99-151 31-84 (164)
315 TIGR00414 serS seryl-tRNA synt 51.7 2.3E+02 0.005 28.1 11.8 11 135-145 45-55 (418)
316 PF12777 MT: Microtubule-bindi 51.6 1.6E+02 0.0035 28.3 10.5 51 168-218 264-314 (344)
317 PF07889 DUF1664: Protein of u 51.5 1.4E+02 0.0031 24.8 12.5 95 79-202 30-124 (126)
318 PF10174 Cast: RIM-binding pro 51.3 3.5E+02 0.0077 29.4 22.3 106 109-219 318-423 (775)
319 TIGR02894 DNA_bind_RsfA transc 51.1 1.4E+02 0.003 26.0 8.8 41 178-218 108-148 (161)
320 TIGR00255 conserved hypothetic 51.0 2.2E+02 0.0049 27.0 13.7 141 102-253 131-290 (291)
321 smart00502 BBC B-Box C-termina 51.0 1.2E+02 0.0025 23.7 17.7 58 104-161 5-62 (127)
322 PRK15396 murein lipoprotein; P 50.8 1.1E+02 0.0024 23.4 7.5 8 220-227 62-69 (78)
323 cd07655 F-BAR_PACSIN The F-BAR 50.8 2E+02 0.0044 26.4 18.2 17 76-92 59-75 (258)
324 KOG4196 bZIP transcription fac 50.7 91 0.002 26.2 7.3 31 192-222 85-115 (135)
325 PRK00888 ftsB cell division pr 50.5 76 0.0016 25.4 6.8 46 107-152 28-73 (105)
326 PRK01773 hscB co-chaperone Hsc 50.0 1.8E+02 0.0038 25.5 11.1 48 133-180 117-164 (173)
327 PF04728 LPP: Lipoprotein leuc 49.7 95 0.0021 22.3 8.5 32 190-221 5-36 (56)
328 PF06160 EzrA: Septation ring 49.5 3.2E+02 0.0069 28.3 22.1 30 157-186 341-370 (560)
329 PLN03188 kinesin-12 family pro 49.4 4.6E+02 0.01 30.1 16.3 53 107-159 1094-1153(1320)
330 PF06005 DUF904: Protein of un 49.2 1.1E+02 0.0024 22.9 9.3 25 179-203 9-33 (72)
331 PF03962 Mnd1: Mnd1 family; I 49.2 1.9E+02 0.0041 25.6 13.2 10 82-91 32-41 (188)
332 COG1382 GimC Prefoldin, chaper 49.0 1.5E+02 0.0033 24.5 12.3 57 163-219 40-101 (119)
333 PRK11578 macrolide transporter 48.9 2.5E+02 0.0054 26.9 12.0 10 108-117 101-110 (370)
334 KOG0288 WD40 repeat protein Ti 48.9 3E+02 0.0064 27.7 16.9 25 106-130 13-37 (459)
335 PF15294 Leu_zip: Leucine zipp 48.9 2.4E+02 0.0052 26.7 13.6 104 101-210 127-230 (278)
336 KOG0933 Structural maintenance 48.8 4.4E+02 0.0094 29.6 22.9 103 101-207 246-348 (1174)
337 PF10211 Ax_dynein_light: Axon 48.6 1.9E+02 0.0042 25.5 15.0 7 18-24 24-30 (189)
338 KOG4673 Transcription factor T 48.5 3.8E+02 0.0082 28.9 21.8 44 181-224 580-627 (961)
339 KOG4360 Uncharacterized coiled 48.1 3.3E+02 0.0072 28.1 15.3 70 173-253 218-287 (596)
340 PF05615 THOC7: Tho complex su 47.7 1.6E+02 0.0035 24.3 12.5 91 134-224 16-110 (139)
341 PF08172 CASP_C: CASP C termin 47.7 66 0.0014 29.8 6.8 59 157-215 76-134 (248)
342 PRK06231 F0F1 ATP synthase sub 47.7 2.1E+02 0.0045 25.6 16.0 10 110-119 104-113 (205)
343 PF10779 XhlA: Haemolysin XhlA 47.4 1.1E+02 0.0024 22.5 7.8 45 172-216 4-48 (71)
344 PF04849 HAP1_N: HAP1 N-termin 47.2 2.7E+02 0.0058 26.8 15.1 53 169-221 215-267 (306)
345 PRK00888 ftsB cell division pr 47.2 86 0.0019 25.1 6.6 32 178-209 31-62 (105)
346 COG1566 EmrA Multidrug resista 46.8 2.9E+02 0.0063 27.0 13.3 15 139-153 129-143 (352)
347 PF13863 DUF4200: Domain of un 46.6 1.5E+02 0.0033 23.7 17.3 104 108-212 9-112 (126)
348 PRK10929 putative mechanosensi 46.5 4.9E+02 0.011 29.6 21.7 7 268-274 338-344 (1109)
349 PF10212 TTKRSYEDQ: Predicted 46.4 3.5E+02 0.0076 27.9 15.8 90 107-208 421-514 (518)
350 PF03915 AIP3: Actin interacti 46.0 3.3E+02 0.0071 27.4 17.4 21 104-124 218-238 (424)
351 PRK11578 macrolide transporter 45.8 2.4E+02 0.0053 27.0 10.8 15 110-124 96-110 (370)
352 PF07106 TBPIP: Tat binding pr 45.8 1.9E+02 0.0041 24.6 9.2 22 199-220 113-134 (169)
353 PRK05431 seryl-tRNA synthetase 45.7 2.6E+02 0.0056 27.9 11.1 30 124-153 32-61 (425)
354 PRK03947 prefoldin subunit alp 45.2 1.1E+02 0.0023 25.3 7.2 43 173-215 5-47 (140)
355 PF02050 FliJ: Flagellar FliJ 45.1 1.4E+02 0.003 22.8 17.4 90 117-213 2-91 (123)
356 PF05008 V-SNARE: Vesicle tran 45.0 1.2E+02 0.0027 22.2 9.2 71 79-149 1-76 (79)
357 PF13949 ALIX_LYPXL_bnd: ALIX 44.9 2.5E+02 0.0055 25.8 17.4 140 73-220 6-169 (296)
358 TIGR02894 DNA_bind_RsfA transc 44.7 2.1E+02 0.0046 24.9 10.9 55 164-218 87-141 (161)
359 PF09755 DUF2046: Uncharacteri 44.7 3E+02 0.0064 26.5 17.4 134 70-216 11-163 (310)
360 PF04108 APG17: Autophagy prot 44.3 3.3E+02 0.0072 27.0 19.9 34 122-155 194-227 (412)
361 cd07595 BAR_RhoGAP_Rich-like T 44.1 2.6E+02 0.0057 25.8 15.0 35 78-112 89-124 (244)
362 PF05911 DUF869: Plant protein 44.1 4.6E+02 0.0099 28.5 14.3 164 87-269 605-768 (769)
363 PF05010 TACC: Transforming ac 44.0 2.5E+02 0.0053 25.4 21.3 42 176-217 99-140 (207)
364 PF12329 TMF_DNA_bd: TATA elem 44.0 1.4E+02 0.0029 22.4 9.4 47 170-216 15-61 (74)
365 COG2900 SlyX Uncharacterized p 43.8 1.2E+02 0.0026 22.9 6.3 38 171-208 19-56 (72)
366 PF06156 DUF972: Protein of un 43.6 1.7E+02 0.0038 23.5 8.4 50 170-219 4-53 (107)
367 PF10805 DUF2730: Protein of u 43.6 1.2E+02 0.0026 24.2 7.0 43 172-214 54-98 (106)
368 PRK06569 F0F1 ATP synthase sub 43.5 2.2E+02 0.0047 24.6 15.2 85 78-165 31-119 (155)
369 COG0172 SerS Seryl-tRNA synthe 43.4 2.4E+02 0.0053 28.4 10.4 32 128-159 37-68 (429)
370 PF06810 Phage_GP20: Phage min 43.2 2.1E+02 0.0046 24.5 10.8 44 105-148 5-48 (155)
371 PRK07737 fliD flagellar cappin 43.0 2E+02 0.0044 29.3 10.1 14 77-90 414-427 (501)
372 PF14193 DUF4315: Domain of un 43.0 1.6E+02 0.0034 22.8 7.8 45 190-235 3-47 (83)
373 KOG4196 bZIP transcription fac 42.9 1.3E+02 0.0027 25.4 7.0 42 166-207 73-114 (135)
374 PF13815 Dzip-like_N: Iguana/D 42.7 1.5E+02 0.0032 24.0 7.5 39 171-209 77-115 (118)
375 PF13949 ALIX_LYPXL_bnd: ALIX 42.7 2.7E+02 0.0059 25.6 10.5 26 129-154 146-171 (296)
376 KOG0979 Structural maintenance 42.6 5.3E+02 0.012 28.9 18.3 134 99-234 159-299 (1072)
377 PF14346 DUF4398: Domain of un 42.5 1.6E+02 0.0035 22.9 11.0 57 106-171 17-73 (103)
378 CHL00019 atpF ATP synthase CF0 42.3 2.3E+02 0.005 24.6 14.2 117 78-194 45-180 (184)
379 KOG3229 Vacuolar sorting prote 41.6 2.8E+02 0.006 25.3 13.4 72 128-199 26-97 (227)
380 PRK14472 F0F1 ATP synthase sub 41.6 2.3E+02 0.0049 24.3 15.7 53 99-151 41-94 (175)
381 PRK15362 pathogenicity island 41.6 1.3E+02 0.0028 30.4 8.0 82 77-158 61-151 (473)
382 KOG0999 Microtubule-associated 41.4 4.4E+02 0.0096 27.7 15.9 154 71-229 72-228 (772)
383 KOG0243 Kinesin-like protein [ 41.4 5.6E+02 0.012 28.8 17.1 97 108-204 406-513 (1041)
384 PF08647 BRE1: BRE1 E3 ubiquit 41.4 1.7E+02 0.0037 22.8 13.5 91 106-208 3-93 (96)
385 PF06818 Fez1: Fez1; InterPro 41.3 2.7E+02 0.0059 25.1 16.3 95 101-214 12-106 (202)
386 PRK06975 bifunctional uroporph 41.3 4.6E+02 0.0099 27.7 15.1 24 231-254 479-502 (656)
387 COG4026 Uncharacterized protei 41.2 3E+02 0.0064 25.5 10.7 81 106-205 122-208 (290)
388 PF14992 TMCO5: TMCO5 family 41.2 3.2E+02 0.007 25.9 13.1 122 104-226 54-182 (280)
389 PF06698 DUF1192: Protein of u 41.1 1.1E+02 0.0023 22.2 5.6 24 190-213 23-46 (59)
390 KOG2629 Peroxisomal membrane a 40.3 3.4E+02 0.0073 26.0 10.9 23 186-208 166-188 (300)
391 PF09849 DUF2076: Uncharacteri 40.2 77 0.0017 29.4 6.0 46 98-143 24-71 (247)
392 PRK15030 multidrug efflux syst 40.1 2E+02 0.0044 28.0 9.4 13 112-124 102-114 (397)
393 PRK09841 cryptic autophosphory 40.1 4.9E+02 0.011 27.7 20.1 52 130-181 270-325 (726)
394 PF13874 Nup54: Nucleoporin co 39.7 2.2E+02 0.0049 23.7 9.4 61 167-227 37-97 (141)
395 PRK05759 F0F1 ATP synthase sub 39.5 2.2E+02 0.0048 23.6 14.3 106 78-185 25-133 (156)
396 PF13779 DUF4175: Domain of un 39.4 2.7E+02 0.0058 30.5 10.7 38 140-177 537-574 (820)
397 PRK09174 F0F1 ATP synthase sub 39.2 2.8E+02 0.0061 24.8 18.4 42 118-159 89-130 (204)
398 PF08946 Osmo_CC: Osmosensory 39.2 72 0.0016 21.9 4.1 32 179-217 10-41 (46)
399 COG4477 EzrA Negative regulato 39.1 4.7E+02 0.01 27.2 18.3 189 77-291 218-426 (570)
400 KOG0288 WD40 repeat protein Ti 39.0 4.2E+02 0.0091 26.7 16.3 28 236-263 109-136 (459)
401 KOG4643 Uncharacterized coiled 38.9 6.1E+02 0.013 28.6 16.4 28 104-131 203-230 (1195)
402 PF07851 TMPIT: TMPIT-like pro 38.9 3.8E+02 0.0081 26.1 11.2 15 132-146 9-23 (330)
403 PF01920 Prefoldin_2: Prefoldi 38.8 1.7E+02 0.0037 22.4 7.1 36 176-211 64-99 (106)
404 COG1345 FliD Flagellar capping 38.8 2E+02 0.0043 29.4 9.2 78 72-152 395-472 (483)
405 PF07445 priB_priC: Primosomal 38.7 2.6E+02 0.0057 24.3 11.9 45 103-147 41-90 (173)
406 PF08946 Osmo_CC: Osmosensory 38.6 75 0.0016 21.8 4.1 13 173-185 18-30 (46)
407 KOG0978 E3 ubiquitin ligase in 38.5 5.3E+02 0.012 27.7 22.6 58 160-217 482-539 (698)
408 KOG4593 Mitotic checkpoint pro 38.4 5.3E+02 0.011 27.7 21.1 144 73-217 356-518 (716)
409 KOG2264 Exostosin EXT1L [Signa 38.3 1.6E+02 0.0034 31.0 8.2 19 25-43 13-33 (907)
410 COG0419 SbcC ATPase involved i 38.1 5.7E+02 0.012 28.0 19.4 26 100-125 323-348 (908)
411 PRK09841 cryptic autophosphory 38.1 5.2E+02 0.011 27.5 17.1 24 199-222 374-397 (726)
412 PF07798 DUF1640: Protein of u 37.7 2.7E+02 0.0059 24.1 17.1 124 82-208 24-151 (177)
413 PF12325 TMF_TATA_bd: TATA ele 37.6 2.3E+02 0.005 23.3 15.7 43 108-150 18-60 (120)
414 PRK15178 Vi polysaccharide exp 37.5 4.5E+02 0.0097 26.6 13.1 106 96-214 273-388 (434)
415 PRK00286 xseA exodeoxyribonucl 37.5 4.2E+02 0.0091 26.2 14.1 16 61-76 194-209 (438)
416 PF10392 COG5: Golgi transport 37.5 2.3E+02 0.005 23.3 13.8 80 133-220 32-111 (132)
417 PF04849 HAP1_N: HAP1 N-termin 37.4 3.8E+02 0.0083 25.7 17.3 34 102-135 163-196 (306)
418 PLN02678 seryl-tRNA synthetase 37.3 4.5E+02 0.0098 26.5 12.5 22 129-150 42-63 (448)
419 PF06216 RTBV_P46: Rice tungro 37.2 1.2E+02 0.0027 28.4 6.8 39 176-214 73-111 (389)
420 PRK12472 hypothetical protein; 37.1 4.8E+02 0.01 26.8 15.6 101 110-214 208-309 (508)
421 PRK09343 prefoldin subunit bet 37.1 2.3E+02 0.005 23.1 12.0 20 111-130 19-38 (121)
422 PRK08453 fliD flagellar cappin 37.0 2E+02 0.0043 30.7 9.1 69 77-148 599-667 (673)
423 TIGR00293 prefoldin, archaeal 37.0 1.2E+02 0.0025 24.5 6.0 37 178-214 3-39 (126)
424 PRK15136 multidrug efflux syst 37.0 4.1E+02 0.0088 25.9 13.9 12 107-118 100-111 (390)
425 PF05557 MAD: Mitotic checkpoi 37.0 11 0.00025 39.9 0.0 41 103-143 90-130 (722)
426 PHA01750 hypothetical protein 36.8 1.3E+02 0.0027 22.5 5.4 31 181-211 42-72 (75)
427 KOG2751 Beclin-like protein [S 36.7 4.6E+02 0.01 26.5 13.1 45 172-216 223-267 (447)
428 PF10234 Cluap1: Clusterin-ass 36.7 3.7E+02 0.008 25.3 13.8 72 172-254 167-238 (267)
429 PRK13428 F0F1 ATP synthase sub 36.7 4.5E+02 0.0098 26.4 16.2 51 102-152 28-78 (445)
430 TIGR02449 conserved hypothetic 36.7 1.7E+02 0.0038 21.6 9.4 51 170-220 10-60 (65)
431 PRK08032 fliD flagellar cappin 36.5 2.2E+02 0.0048 28.6 9.1 54 128-196 407-460 (462)
432 PF07195 FliD_C: Flagellar hoo 36.4 2.2E+02 0.0049 25.7 8.4 66 77-145 171-236 (239)
433 PRK14127 cell division protein 36.4 1.9E+02 0.0042 23.4 7.1 42 180-221 29-70 (109)
434 PF15466 DUF4635: Domain of un 36.4 73 0.0016 26.4 4.5 40 78-117 84-123 (135)
435 PRK14160 heat shock protein Gr 36.3 3.3E+02 0.0072 24.7 9.4 69 158-226 31-99 (211)
436 PF12958 DUF3847: Protein of u 36.2 2.1E+02 0.0045 22.3 6.9 27 189-215 9-35 (86)
437 PF07820 TraC: TraC-like prote 36.2 1.5E+02 0.0032 23.4 6.1 30 227-256 34-65 (92)
438 KOG1937 Uncharacterized conser 36.2 4.9E+02 0.011 26.6 16.1 121 94-220 233-363 (521)
439 PRK14474 F0F1 ATP synthase sub 36.1 3.5E+02 0.0076 24.9 16.1 23 102-124 32-54 (250)
440 TIGR02338 gimC_beta prefoldin, 35.9 2.2E+02 0.0048 22.6 11.3 91 109-206 13-106 (110)
441 KOG1916 Nuclear protein, conta 35.8 3.9E+02 0.0084 29.9 10.9 34 104-137 874-907 (1283)
442 PF10146 zf-C4H2: Zinc finger- 35.7 3.5E+02 0.0076 24.8 16.8 29 116-144 14-42 (230)
443 PF05377 FlaC_arch: Flagella a 35.4 1.7E+02 0.0036 21.0 6.9 40 177-216 3-42 (55)
444 PRK01356 hscB co-chaperone Hsc 35.3 2.9E+02 0.0064 23.8 10.4 49 132-180 111-159 (166)
445 PF05384 DegS: Sensor protein 35.1 3E+02 0.0065 23.8 17.8 39 181-219 77-115 (159)
446 KOG3192 Mitochondrial J-type c 35.0 3.1E+02 0.0067 24.0 9.3 71 99-179 94-164 (168)
447 PRK05892 nucleoside diphosphat 34.6 1.1E+02 0.0024 26.3 5.7 61 196-259 12-72 (158)
448 PF07111 HCR: Alpha helical co 34.5 6.1E+02 0.013 27.3 17.6 108 101-212 498-606 (739)
449 COG1730 GIM5 Predicted prefold 34.5 2.9E+02 0.0064 23.5 8.3 36 180-215 93-128 (145)
450 cd07598 BAR_FAM92 The Bin/Amph 34.5 3.5E+02 0.0075 24.4 19.8 64 99-162 4-67 (211)
451 PRK14475 F0F1 ATP synthase sub 34.5 2.9E+02 0.0064 23.5 15.7 21 104-124 60-80 (167)
452 cd07623 BAR_SNX1_2 The Bin/Amp 34.4 3.4E+02 0.0075 24.3 18.1 90 122-214 111-201 (224)
453 PRK11820 hypothetical protein; 34.4 4.1E+02 0.0089 25.2 16.1 141 102-253 129-287 (288)
454 KOG4360 Uncharacterized coiled 34.2 5.5E+02 0.012 26.6 15.6 21 280-300 440-460 (596)
455 PF05335 DUF745: Protein of un 34.2 3.4E+02 0.0073 24.2 16.8 8 206-213 148-155 (188)
456 PF04977 DivIC: Septum formati 34.1 1.7E+02 0.0037 21.1 6.1 45 175-219 18-62 (80)
457 PF12958 DUF3847: Protein of u 34.0 1.5E+02 0.0032 23.1 5.8 33 176-208 3-35 (86)
458 PF10191 COG7: Golgi complex c 34.0 6.3E+02 0.014 27.3 20.9 30 116-145 66-95 (766)
459 PRK13182 racA polar chromosome 33.8 3.2E+02 0.007 23.9 8.6 55 154-209 76-146 (175)
460 PF11214 Med2: Mediator comple 33.6 2.5E+02 0.0055 22.7 7.2 50 84-133 37-86 (105)
461 PF15035 Rootletin: Ciliary ro 33.4 3.4E+02 0.0073 23.9 13.0 94 115-212 7-119 (182)
462 cd07664 BAR_SNX2 The Bin/Amphi 33.4 3.8E+02 0.0082 24.5 18.4 125 78-215 88-212 (234)
463 TIGR03825 FliH_bacil flagellar 33.3 3.8E+02 0.0083 24.5 16.7 52 109-160 40-92 (255)
464 KOG0976 Rho/Rac1-interacting s 33.3 7E+02 0.015 27.6 18.2 13 279-291 480-492 (1265)
465 PF08898 DUF1843: Domain of un 33.3 1.1E+02 0.0023 21.8 4.4 31 171-201 21-51 (53)
466 PRK10246 exonuclease subunit S 33.2 7.3E+02 0.016 27.8 21.8 44 111-154 715-758 (1047)
467 PRK06568 F0F1 ATP synthase sub 33.2 3.1E+02 0.0068 23.5 14.2 50 99-148 27-77 (154)
468 PF13763 DUF4167: Domain of un 33.2 2.3E+02 0.0049 21.9 6.9 43 139-181 35-77 (80)
469 PRK10361 DNA recombination pro 33.0 5.5E+02 0.012 26.2 20.0 91 109-199 63-158 (475)
470 PHA02047 phage lambda Rz1-like 32.9 2.6E+02 0.0056 22.4 6.9 29 175-203 35-63 (101)
471 PF09738 DUF2051: Double stran 32.8 4.5E+02 0.0097 25.2 13.6 45 105-149 83-127 (302)
472 PF06320 GCN5L1: GCN5-like pro 32.6 2.8E+02 0.0061 22.8 11.8 75 118-194 38-112 (121)
473 PRK10780 periplasmic chaperone 32.6 3.1E+02 0.0068 23.3 13.2 10 97-106 28-37 (165)
474 PRK13169 DNA replication intia 32.4 2.7E+02 0.006 22.6 8.4 50 170-219 4-53 (110)
475 PF01166 TSC22: TSC-22/dip/bun 32.4 71 0.0015 23.1 3.4 30 187-216 13-42 (59)
476 COG0216 PrfA Protein chain rel 32.1 5E+02 0.011 25.5 12.0 28 76-104 3-30 (363)
477 PF04201 TPD52: Tumour protein 32.0 1.7E+02 0.0037 25.5 6.4 38 174-211 29-66 (162)
478 PLN02939 transferase, transfer 32.0 7.7E+02 0.017 27.6 16.6 130 88-217 253-398 (977)
479 PF04899 MbeD_MobD: MbeD/MobD 32.0 2.2E+02 0.0047 21.3 9.8 68 143-214 1-68 (70)
480 PRK13455 F0F1 ATP synthase sub 32.0 3.4E+02 0.0073 23.5 13.9 115 78-192 48-181 (184)
481 PRK09973 putative outer membra 31.9 2.5E+02 0.0053 21.9 6.6 40 182-221 25-64 (85)
482 PF04977 DivIC: Septum formati 31.9 2E+02 0.0043 20.8 7.6 46 166-211 16-64 (80)
483 PF14193 DUF4315: Domain of un 31.9 1.7E+02 0.0037 22.6 5.8 35 175-209 2-36 (83)
484 PF04156 IncA: IncA protein; 31.7 3.3E+02 0.0072 23.4 17.4 110 110-231 78-187 (191)
485 cd00890 Prefoldin Prefoldin is 31.6 2.2E+02 0.0048 22.6 6.9 44 171-214 84-127 (129)
486 PF04380 BMFP: Membrane fusoge 31.6 2.3E+02 0.0049 21.4 9.3 71 140-210 5-79 (79)
487 KOG0995 Centromere-associated 31.5 6.3E+02 0.014 26.5 18.5 162 82-261 197-359 (581)
488 PRK07352 F0F1 ATP synthase sub 31.2 3.4E+02 0.0073 23.2 14.3 106 78-185 40-148 (174)
489 PF02403 Seryl_tRNA_N: Seryl-t 31.2 2.6E+02 0.0055 21.8 8.2 58 163-220 39-99 (108)
490 PRK01203 prefoldin subunit alp 31.1 1.8E+02 0.0039 24.4 6.3 41 162-202 2-42 (130)
491 cd07614 BAR_Endophilin_A2 The 31.1 4.1E+02 0.009 24.2 12.6 125 79-207 97-223 (223)
492 PRK10920 putative uroporphyrin 31.0 5.4E+02 0.012 25.5 12.7 109 146-254 57-173 (390)
493 PRK01885 greB transcription el 30.9 1.4E+02 0.003 25.6 5.8 62 194-258 9-71 (157)
494 PF05911 DUF869: Plant protein 30.6 7.4E+02 0.016 27.0 19.3 169 86-258 500-690 (769)
495 cd07619 BAR_Rich2 The Bin/Amph 30.6 4.5E+02 0.0097 24.5 15.7 129 79-207 90-235 (248)
496 TIGR03185 DNA_S_dndD DNA sulfu 30.5 6.5E+02 0.014 26.3 20.3 145 75-229 180-327 (650)
497 PRK06798 fliD flagellar cappin 30.4 3.3E+02 0.0071 27.4 9.1 69 77-149 358-426 (440)
498 PF00170 bZIP_1: bZIP transcri 30.4 2E+02 0.0043 20.4 8.5 49 164-212 16-64 (64)
499 TIGR01010 BexC_CtrB_KpsE polys 30.3 4.9E+02 0.011 24.8 18.5 150 78-228 148-311 (362)
500 KOG0837 Transcriptional activa 29.9 1.3E+02 0.0029 28.2 5.7 42 166-207 226-267 (279)
No 1
>PRK10698 phage shock protein PspA; Provisional
Probab=100.00 E-value=5.5e-48 Score=349.01 Aligned_cols=220 Identities=31% Similarity=0.497 Sum_probs=214.3
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (300)
Q Consensus 76 Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~ 155 (300)
||||+||+++|+|++|+++|++|||++||+|+|+||++.+.+++.++|.+++.++++++++.+++..+++|+.+|..||.
T Consensus 1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~ 80 (222)
T PRK10698 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR 80 (222)
T ss_pred CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022272 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (300)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~ 235 (300)
+|+||||++||.+|..++..+..|+.+++.+...+++|+.++..|+.+|.+++.++.+|++|.++|+++.++|+.+++++
T Consensus 81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~ 160 (222)
T PRK10698 81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChHHHHhhhccC-CHHHHHHHHHHHcCCCC
Q 022272 236 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETS-SVDDDLANLKKELSGSS 295 (300)
Q Consensus 236 ~~~a~~~feR~eeki~~~ea~aeA~~el~~~~Le~kla~le~~-~vddeLarLKa~l~~~~ 295 (300)
+++++..|+|||+||.++|++++|+....+++|+.+|+.|+.+ .||++|++||++|+.+.
T Consensus 161 ~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve~ELa~LK~~~~~~~ 221 (222)
T PRK10698 161 LDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEISEQLAALKAKMKQDN 221 (222)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999776667899999999865 59999999999997654
No 2
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=100.00 E-value=3e-46 Score=337.23 Aligned_cols=218 Identities=35% Similarity=0.539 Sum_probs=212.6
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (300)
Q Consensus 76 Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~ 155 (300)
||||+||+++|+|++|+++|++|||++||+|+||||+++|.+++.+++++++.+++++++++++...+.+|+.+|..||.
T Consensus 1 M~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 1 MGIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022272 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (300)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~ 235 (300)
+|+||||++||.++..++..+..|+.+++.+...+++|+..+..|+.+|.+++.++.+|++|.+.|+++..++..+++++
T Consensus 81 ~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~ 160 (219)
T TIGR02977 81 KGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGR 160 (219)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChHHHHhhhcc-CCHHHHHHHHHHHcCC
Q 022272 236 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLET-SSVDDDLANLKKELSG 293 (300)
Q Consensus 236 ~~~a~~~feR~eeki~~~ea~aeA~~el~~~~Le~kla~le~-~~vddeLarLKa~l~~ 293 (300)
++++...|+|||+||.++|+.++++...++++++.+|+.++. ++||++|++||++|++
T Consensus 161 ~~~a~~~fer~e~ki~~~ea~aea~~~~~~~~l~~~l~~l~~~~~vd~eLa~LK~~~~~ 219 (219)
T TIGR02977 161 SDEAMARFEQYERRVDELEAQAESYDLGRKPSLEDEFAELEADDEIERELAALKAKMKK 219 (219)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHhcCCChHHHHHHHHHhhhCC
Confidence 999999999999999999999999976557889999999996 4699999999999864
No 3
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-43 Score=319.48 Aligned_cols=218 Identities=47% Similarity=0.637 Sum_probs=213.4
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (300)
Q Consensus 76 Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~ 155 (300)
||||+||+++|+|++|+++|++|||.+||+|+||||+.+|.++++.+|++++.+++++++|+++...+++|+.+|+.||.
T Consensus 1 M~i~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~ 80 (225)
T COG1842 1 MGIFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ 80 (225)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022272 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (300)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~ 235 (300)
+|+|+||+++|.+++.+++.+..++.++.++...+++|+.++..|+.||.+++.++.++++|.++++++.+|+..+++++
T Consensus 81 ~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s 160 (225)
T COG1842 81 AGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGS 160 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcc---cCCChHHHHhhhcc-CCHHHHHHHHHHHcCC
Q 022272 236 TSSALSAFEKMEEKVLTMESQADSLNQL---TTDDLEGKFALLET-SSVDDDLANLKKELSG 293 (300)
Q Consensus 236 ~~~a~~~feR~eeki~~~ea~aeA~~el---~~~~Le~kla~le~-~~vddeLarLKa~l~~ 293 (300)
+++++..|+||++||+.+|++++++.++ .++|++.+|+.++. ..|+++|++||+++..
T Consensus 161 ~~sa~~~fer~e~kiee~ea~a~~~~el~~~~~~dl~~e~a~~~~~~~v~~~La~lka~~~~ 222 (225)
T COG1842 161 SSSAMAAFERMEEKIEEREARAEAAAELAEGSGDDLDKEFAQAGAQSAVDSRLAALKARMKG 222 (225)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHhhccCcccHHHHHHHhcccccHHHHHHHHHHhhcc
Confidence 9999999999999999999999999975 47899999999985 6899999999999976
No 4
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=100.00 E-value=4.3e-43 Score=316.13 Aligned_cols=217 Identities=46% Similarity=0.665 Sum_probs=211.1
Q ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022272 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (300)
Q Consensus 77 sif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~ 156 (300)
|||+||+++|+|++|+++|++|||++||+|+||||++.|.+++.+++.+++.+++++++++++...+.+|+.+|..||.+
T Consensus 1 ~lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~ 80 (221)
T PF04012_consen 1 GLFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA 80 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 022272 157 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT 236 (300)
Q Consensus 157 G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~ 236 (300)
|+||||+.||.++..+++++..|+.+++.+..++++|+..+.+++.+|.++++++.+|++|.++|+++.+++..+++++.
T Consensus 81 g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~ 160 (221)
T PF04012_consen 81 GREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSV 160 (221)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHhhccc--CCChHHHHhhhcc-CCH-HHHHHHHHHHcCC
Q 022272 237 SSALSAFEKMEEKVLTMESQADSLNQLT--TDDLEGKFALLET-SSV-DDDLANLKKELSG 293 (300)
Q Consensus 237 ~~a~~~feR~eeki~~~ea~aeA~~el~--~~~Le~kla~le~-~~v-ddeLarLKa~l~~ 293 (300)
+++...|+||+++|..++++++++.++. ..+++.+|+.++. ..+ +++|++||++.++
T Consensus 161 ~~a~~~~er~e~ki~~~ea~a~a~~el~~~~~~~e~~l~~~~~~~~~~~~~La~LK~~~~~ 221 (221)
T PF04012_consen 161 SSAMDSFERMEEKIEEMEARAEASAELADSDQDLEAELEELERDSSVSEDELAALKAKQGQ 221 (221)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCcchHHHHHHHHhHccC
Confidence 9999999999999999999999999987 3579999999985 578 9999999998763
No 5
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=98.68 E-value=4.3e-06 Score=74.25 Aligned_cols=144 Identities=18% Similarity=0.247 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 127 ASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (300)
Q Consensus 127 A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e 206 (300)
.....++++...++..+++....|+..+.+|+-+-|..+|.+|+.|+.++..+..++.+++.++.. |+.
T Consensus 34 ~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~-----------iE~ 102 (191)
T PTZ00446 34 EAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMIN-----------LEN 102 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 334455666777777777777888899999999999999999999999999999998877777765 666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhcc-----cCCChHHHHhhhccCCHH
Q 022272 207 ARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQL-----TTDDLEGKFALLETSSVD 281 (300)
Q Consensus 207 ~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~aeA~~el-----~~~~Le~kla~le~~~vd 281 (300)
.+...+++.+-...+++.+.++. .++.+.+...++.|++.++..+.-.++++.- +.++|+.+|..|+...+|
T Consensus 103 a~~~~ev~~aLk~g~~aLK~~~k---~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e~l~ 179 (191)
T PTZ00446 103 MHLHKIAVNALSYAANTHKKLNN---EINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQTME 179 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888876 4567788888899998888888777777532 235678888888777777
Q ss_pred HHH
Q 022272 282 DDL 284 (300)
Q Consensus 282 deL 284 (300)
..|
T Consensus 180 ~~l 182 (191)
T PTZ00446 180 EKL 182 (191)
T ss_pred HHH
Confidence 665
No 6
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00037 Score=61.98 Aligned_cols=137 Identities=20% Similarity=0.285 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 135 KCKAAEQASEDW-YRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 135 k~~~~~~~i~~~-e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
+.+-++.+|..- +.-|+.-..+ +--.|..||.||+.||+++..+...+...+.+... |+....--++
T Consensus 36 Kqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~a-----------lEnA~~n~Ev 103 (221)
T KOG1656|consen 36 KQEFLEKKIEQEVENNARKYGTK-NKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREA-----------LENANTNTEV 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------HHcccccHHH
Confidence 333333444333 2224443344 66789999999999999998888877766666655 4445555667
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhc-------ccCCChHHHHhhhccCCHHHHHHH
Q 022272 214 LKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQ-------LTTDDLEGKFALLETSSVDDDLAN 286 (300)
Q Consensus 214 LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~aeA~~e-------l~~~~Le~kla~le~~~vddeLar 286 (300)
|.+--..|+|.+.++. +++.+.+.+.++.|.++++-.+--.+|++. ++.|+|..+|.+|++...|.+|-.
T Consensus 104 l~~m~~~A~AmK~~h~---~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~ 180 (221)
T KOG1656|consen 104 LDAMGSAAKAMKAAHK---NMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLD 180 (221)
T ss_pred HHHHHHHHHHHHHHHh---ccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777778888877765 677888899999999999999988888753 234677788888877666666543
No 7
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=98.08 E-value=0.00018 Score=61.64 Aligned_cols=155 Identities=22% Similarity=0.335 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 121 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL 200 (300)
Q Consensus 121 alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~L 200 (300)
++..+......+++++..++..+.+...+|..++++|+.+.|+..|.++..+++.+..+...+.++ ..+
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l-----------~~~ 70 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNL-----------ESV 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 345566677889999999999999999999999999999999999999999988777776555543 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChHHHHhhhccCCH
Q 022272 201 ESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSV 280 (300)
Q Consensus 201 e~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~aeA~~el~~~~Le~kla~le~~~v 280 (300)
..+|+........+.+=....++-..++. +++.......++.+++.++.++.--+++...... - ......++
T Consensus 71 ~~~ie~a~~~~~v~~al~~~~~~Lk~~~~---~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~----~-~~~dd~el 142 (171)
T PF03357_consen 71 LLQIETAQSNQQVVKALKQSSKALKKINK---QINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQ----V-DDVDDEEL 142 (171)
T ss_dssp HHHHHHHHHHHHHSSS----SHHHHHHHH---STTSCCHHHHHHHHHHHHHHHTS---------------------TTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccC----C-CCCCHHHH
Confidence 45566677777777766667777666655 4556777778888888777666444444321100 0 11223467
Q ss_pred HHHHHHHHHHcCCC
Q 022272 281 DDDLANLKKELSGS 294 (300)
Q Consensus 281 ddeLarLKa~l~~~ 294 (300)
+++|..|-.+....
T Consensus 143 e~eL~~l~~e~~~~ 156 (171)
T PF03357_consen 143 EEELEQLEDEIEEE 156 (171)
T ss_dssp TCHHHHHHHCCCTT
T ss_pred HHHHHHHHHHHhhh
Confidence 77777777765543
No 8
>PTZ00464 SNF-7-like protein; Provisional
Probab=97.87 E-value=0.0042 Score=56.18 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=70.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 022272 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTS 237 (300)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~ 237 (300)
.-.-|..+|.+|+.||.++..+..++.+.+..+. .|+..+....++.+-...+++.+.++.. ++.+
T Consensus 59 ~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~-----------~ie~a~~~~~vv~amk~g~kaLK~~~k~---i~id 124 (211)
T PTZ00464 59 HKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQF-----------TTESVKDTKVQVDAMKQAAKTLKKQFKK---LNVD 124 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHH
Confidence 3458889999999999988888888776555544 4667777788888888888888888764 5677
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHhhc
Q 022272 238 SALSAFEKMEEKVLTMESQADSLNQ 262 (300)
Q Consensus 238 ~a~~~feR~eeki~~~ea~aeA~~e 262 (300)
.+...++.|++.++..+.-.++++.
T Consensus 125 ~Vd~l~Dei~E~~e~~~EI~e~Ls~ 149 (211)
T PTZ00464 125 KVEDLQDELADLYEDTQEIQEIMGR 149 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7778888888888877777776653
No 9
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0024 Score=62.62 Aligned_cols=149 Identities=20% Similarity=0.288 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (300)
Q Consensus 115 l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~ 194 (300)
+...-.+++.++-....+.++++.+++++++...+++.|++.|.-.+|..-|.+++-.++.++..-..+.+....
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~v----- 302 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETV----- 302 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 455566777788888889999999999999999999999999999999999999999999888877776655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhcc-------cCCC
Q 022272 195 SNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQL-------TTDD 267 (300)
Q Consensus 195 ~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~aeA~~el-------~~~~ 267 (300)
-++|...+.-+..+.|=..-..+-+.+... +.+++.+.+.+|.+++-+++.+---++++.. ..++
T Consensus 303 ------l~~Id~s~~nkvvl~AyksGs~alK~il~~--~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~ 374 (439)
T KOG2911|consen 303 ------LSQIDNSQTNKVVLQAYKSGSEALKAILAQ--GGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDED 374 (439)
T ss_pred ------HHHHHhhcccHHHHHHHHHhHHHHHHHHhc--cCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHH
Confidence 445777777777777776667776666655 3445667888888888888777655555432 2345
Q ss_pred hHHHHhhhc
Q 022272 268 LEGKFALLE 276 (300)
Q Consensus 268 Le~kla~le 276 (300)
||.++.+|+
T Consensus 375 lEkEL~~L~ 383 (439)
T KOG2911|consen 375 LEKELEDLE 383 (439)
T ss_pred HHHHHHHHH
Confidence 666666655
No 10
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.44 E-value=0.039 Score=49.94 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 022272 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK-----SYADNANALKAQLDQ 185 (300)
Q Consensus 111 me~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~-----~~e~~~~~le~ql~~ 185 (300)
++.-+.+++..+..+...--........++.++.+....+.. .++=|+.||..=. ..-.....++.++..
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~-----~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~ 103 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVAD-----WQEKAELALSKGREDLARAALIEKQKAQELAEA 103 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566665555555555555555555555555443 2344555554211 123356778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHHHhHHHHHHHhh
Q 022272 186 QKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNV----NTSSALSAFEKMEEKVLTMESQADSLN 261 (300)
Q Consensus 186 ~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~----~~~~a~~~feR~eeki~~~ea~aeA~~ 261 (300)
++.+++.++..+.+|+.+|.+++.++..++++...-.++.+...+...+ +..+...+++.++. ++....+.++..
T Consensus 104 l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer-~e~ki~~~ea~a 182 (219)
T TIGR02977 104 LERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQ-YERRVDELEAQA 182 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999988777776655544333 23455555555543 333344444444
Q ss_pred cccCCChHHHHhhhccCCHHHHHHHHH
Q 022272 262 QLTTDDLEGKFALLETSSVDDDLANLK 288 (300)
Q Consensus 262 el~~~~Le~kla~le~~~vddeLarLK 288 (300)
+... .....+++++|+.|-
T Consensus 183 ea~~--------~~~~~~l~~~l~~l~ 201 (219)
T TIGR02977 183 ESYD--------LGRKPSLEDEFAELE 201 (219)
T ss_pred HHhh--------ccCCCCHHHHHHHhc
Confidence 3311 112456999998884
No 11
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.17 E-value=0.045 Score=49.25 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Aka 223 (300)
.++.++..+..+++.+...+..|+..+.+++.+...+..+....+++.....+
T Consensus 102 ~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~ 154 (221)
T PF04012_consen 102 RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEA 154 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555555544444444443
No 12
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.14 E-value=0.4 Score=51.32 Aligned_cols=109 Identities=17% Similarity=0.292 Sum_probs=62.4
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCcHHHHHHHHHHHH
Q 022272 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE---DWYRKAQLALQKGEEDLAREALKRRK 170 (300)
Q Consensus 94 ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~---~~e~rA~~AL~~G~EdLAreAL~rk~ 170 (300)
+.+.||..++.+ +..|+=++.+...--.++|..+-.+++++.+.+.+.. +|.++-..-+..--|. -.-+--.|.
T Consensus 245 ~kR~EDk~Kl~E--lekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~-iEmaTldKE 321 (1243)
T KOG0971|consen 245 LKRAEDKAKLKE--LEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADA-IEMATLDKE 321 (1243)
T ss_pred hhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHH
Confidence 335578877766 3455556666666666677777777777766554433 3333322222111110 112233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~ 205 (300)
-.|+.+..|+.+++..++.++.|..+++-|+..++
T Consensus 322 mAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 322 MAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777776655443
No 13
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=96.96 E-value=0.3 Score=44.69 Aligned_cols=171 Identities=15% Similarity=0.165 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 022272 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR-----RKSYADNANALKAQL 183 (300)
Q Consensus 109 reme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~r-----k~~~e~~~~~le~ql 183 (300)
.=+++.|.+++..++.+...--++--....++.++.+...++..= +.=|+.||.. -...-.....|+.++
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~-----e~~A~~Al~~g~E~LAr~al~~~~~le~~~ 101 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL-----EEKAELALQAGNEDLAREALEEKQSLEDLA 101 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 344455556666665555444444444444444444444444332 3444444432 123455678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCcHHHHHHHHHHHHHhHHHHHHH
Q 022272 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN----TSSALSAFEKMEEKVLTMESQADS 259 (300)
Q Consensus 184 ~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~----~~~a~~~feR~eeki~~~ea~aeA 259 (300)
.....++..+...+.+|+..+..++.++..++++....++......+...++ ..+..++...+ +++.+.-.+.++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~f-er~e~kiee~ea 180 (225)
T COG1842 102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAF-ERMEEKIEEREA 180 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888777666554433 34443444443 345555555555
Q ss_pred hhcccCCChHHHHhhhccCCHHHHHHHHHHH
Q 022272 260 LNQLTTDDLEGKFALLETSSVDDDLANLKKE 290 (300)
Q Consensus 260 ~~el~~~~Le~kla~le~~~vddeLarLKa~ 290 (300)
-.+. ..++......+++++++.+...
T Consensus 181 ~a~~-----~~el~~~~~~dl~~e~a~~~~~ 206 (225)
T COG1842 181 RAEA-----AAELAEGSGDDLDKEFAQAGAQ 206 (225)
T ss_pred HHHH-----hHHhhccCcccHHHHHHHhccc
Confidence 5432 3333333345799999988763
No 14
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.91 E-value=0.43 Score=54.39 Aligned_cols=134 Identities=20% Similarity=0.228 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHhcccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP---~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL 154 (300)
+|+.+.+...+++-.-. +-.| ..+|+.. -..+....+++..+...-.+-.++...+.++..++.+++..+..|.
T Consensus 258 lFk~lI~~~~~~~aad~--~r~~eERR~liEEA-ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 258 LFKHLITESTNYVAADY--MRHANERRVHLEEA-LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHhhhhhhhhHHHH--hhCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544333 3344 4777776 4577888888888888888888888888888888888888888886
Q ss_pred HcCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 155 QKGEEDLA-REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 155 ~~G~EdLA-reAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
+.-...-- .....++..+...+..+...++.+...+..++..+..++.++.+++.+...+
T Consensus 335 kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeL 395 (1486)
T PRK04863 335 DHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDEL 395 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65332111 1224445555556666666666655555555555555544444444444444
No 15
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.18 Score=55.10 Aligned_cols=146 Identities=20% Similarity=0.285 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 183 (300)
+++.++++...+..++-.+-.+.+.-+++...++.++.++...+..+. ..-.+ ..+....+++++.++.++
T Consensus 804 ~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~---k~~~d------~~~l~~~~~~ie~l~kE~ 874 (1293)
T KOG0996|consen 804 LEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL---KKVVD------KKRLKELEEQIEELKKEV 874 (1293)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccCc------HHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666677777777777777777777776622 12111 122233445555555555
Q ss_pred HHH------HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 022272 184 DQQ------KNVVNNLVSNTRLL--------ESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEK 249 (300)
Q Consensus 184 ~~~------~~~v~~L~~~l~~L--------e~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eek 249 (300)
+.. +.++.+|+..+..+ +.+++....+++.+.+..+...+..+. ++.+...+...+.+++..
T Consensus 875 e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~----s~~~i~k~q~~l~~le~~ 950 (1293)
T KOG0996|consen 875 EELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKT----SDRNIAKAQKKLSELERE 950 (1293)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhc----CcccHHHHHHHHHHHHHH
Confidence 555 24444555444433 566667777777776555544443322 233344566677777777
Q ss_pred HHhHHHHHHHhhc
Q 022272 250 VLTMESQADSLNQ 262 (300)
Q Consensus 250 i~~~ea~aeA~~e 262 (300)
+..++.+.+.+.+
T Consensus 951 ~~~~e~e~~~L~e 963 (1293)
T KOG0996|consen 951 IEDTEKELDDLTE 963 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 8777777766643
No 16
>PRK10698 phage shock protein PspA; Provisional
Probab=96.77 E-value=0.23 Score=45.24 Aligned_cols=60 Identities=7% Similarity=0.065 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (300)
Q Consensus 165 AL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq 224 (300)
+......++.++...+.+++++...+.+|+..|.+++.|-..+..+.....++.+..++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~ 156 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQL 156 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666666666666666666666655554443
No 17
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.38 E-value=0.41 Score=45.91 Aligned_cols=139 Identities=17% Similarity=0.231 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 183 (300)
|+..+..|+++...+...+..+-...-.+..+++.+..++..+...+.. +...+- .+...+...+......+
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-~~~~D~-------~eL~~lr~eL~~~~~~i 225 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE-IESCDQ-------EELEALRQELAEQKEEI 225 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcCH-------HHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444445555555544444333 222222 22333345555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHH
Q 022272 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQA 257 (300)
Q Consensus 184 ~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~a 257 (300)
...+..+.+++..+..++.+|++...++..+.+..+.++-... ...++. ...+.+++.++..++...
T Consensus 226 ~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~---~~r~~t----~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 226 EAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE---ECRGWT----RSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCC----HHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666665554432221 122222 346777777777666443
No 18
>PRK09039 hypothetical protein; Validated
Probab=96.22 E-value=0.93 Score=43.89 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 174 ~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+.+...+..+......+..|+.+|..|+.++..++..++...
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444333333333333333
No 19
>PRK09039 hypothetical protein; Validated
Probab=96.18 E-value=0.98 Score=43.74 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq 224 (300)
...++..|..+++.++.++..|...|..++.+..+.+.+++.|..+.+.+.++
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777777777777777777777777776655
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=96.04 E-value=2.8 Score=45.13 Aligned_cols=95 Identities=18% Similarity=0.258 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (300)
Q Consensus 115 l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~ 194 (300)
+......+.........++.++..++..+.+|...+..+...-.+ +..+...+..++..+...+.... .+..+.
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~le-~~~~~~ 598 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE-----AREEVAELNSKLAELKERIESLE-RIRTLL 598 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 333344445555555666666666667777777655554333322 22334444444444444444444 344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022272 195 SNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 195 ~~l~~Le~ki~e~k~k~~~Lk 215 (300)
..+..++..+.+++.++..++
T Consensus 599 ~~i~~~~~~~~~~~~~~~~l~ 619 (880)
T PRK02224 599 AAIADAEDEIERLREKREALA 619 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.81 E-value=1.7 Score=49.23 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (300)
Q Consensus 165 AL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (300)
.+..+..++.++..+...+.++...+..++..+..+..++..+..++..++.+..
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE 933 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999999998888888888888776544
No 22
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.76 E-value=1 Score=47.64 Aligned_cols=188 Identities=15% Similarity=0.268 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHHH-HHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED-LAREALKRRKSYA-DNANALKA 181 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~Ed-LAreAL~rk~~~e-~~~~~le~ 181 (300)
|+-.|+.+++.-.++|..+......++.+.-++.+++.+.+.++.+.......-..| .....|+++...| .....++.
T Consensus 430 LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEk 509 (697)
T PF09726_consen 430 LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEK 509 (697)
T ss_pred HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444555555566666667777777776666655544333222 2223333322211 11222222
Q ss_pred HHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-h-cCCCC
Q 022272 182 QLDQQK----------------------NVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATK-VSEM-L-GNVNT 236 (300)
Q Consensus 182 ql~~~~----------------------~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~-v~~~-~-~~~~~ 236 (300)
|+...+ +-.+.++...++||.+|..++.++..-.-+...++...+ +... - ...+.
T Consensus 510 QL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~ 589 (697)
T PF09726_consen 510 QLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDT 589 (697)
T ss_pred HHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 222211 222345555566666555555554444444333333221 1111 1 12245
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHhhcc-----c-CCChHHHHhhhcc--CCHHHHHHHHHHHc
Q 022272 237 SSALSAFEKMEEKVLTMESQADSLNQL-----T-TDDLEGKFALLET--SSVDDDLANLKKEL 291 (300)
Q Consensus 237 ~~a~~~feR~eeki~~~ea~aeA~~el-----~-~~~Le~kla~le~--~~vddeLarLKa~l 291 (300)
...+.+|.-|.||-..+|.-..|-.-+ + =.+--.++..+.. -.-|.|+..||+++
T Consensus 590 e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 590 EVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888999988888654432111 0 0112223333222 13577888888864
No 23
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.64 E-value=3 Score=43.18 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 186 (300)
Q Consensus 107 ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~ 186 (300)
.++++...+.+....++.....+-.+....+.+.+.-...+..+..++.--.+.+.++...+...+.+.-..++.++..+
T Consensus 122 e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~l 201 (629)
T KOG0963|consen 122 ENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEEL 201 (629)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888888888887788888888888888888888888999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 187 KNVVNNLVSNTRLLESKIQEARSK 210 (300)
Q Consensus 187 ~~~v~~L~~~l~~Le~ki~e~k~k 210 (300)
+..+..|...+..-..++-+++++
T Consensus 202 e~ki~~lq~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 202 EKKISSLQSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHh
Confidence 888888877666655555555555
No 24
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.60 E-value=1.4 Score=40.22 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (300)
..++..+..+...+..++....+.......++.+|..+..++...-.|+..|.
T Consensus 144 ~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE 196 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAE 196 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555555555555444443
No 25
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.55 E-value=2.1 Score=47.83 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=8.1
Q ss_pred HHHHHHHhHHHHHHHhh
Q 022272 245 KMEEKVLTMESQADSLN 261 (300)
Q Consensus 245 R~eeki~~~ea~aeA~~ 261 (300)
.++.++..++.+.+.+.
T Consensus 946 ~~~~~i~~le~~i~~lg 962 (1163)
T COG1196 946 ELEREIERLEEEIEALG 962 (1163)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44555555555544433
No 26
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.50 E-value=1.9 Score=47.59 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 180 (300)
..++...+++++....+++.++-.+-+.....++.+...++...--|. +|-.+-++..+++..++.|+
T Consensus 1565 ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~------------~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1565 AEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEK------------LATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666655555555555444433332 33344444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTR 198 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~ 198 (300)
..+.+......+......
T Consensus 1633 ~~~~qns~~A~~a~~~a~ 1650 (1758)
T KOG0994|consen 1633 HKAAQNSAEAKQAEKTAG 1650 (1758)
T ss_pred HHHHhccHHHHHHHHHHH
Confidence 555544444444333333
No 27
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.48 E-value=1.8 Score=41.55 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK-SYADNANALK 180 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~-~~e~~~~~le 180 (300)
++++..+..+.+.+..++...+.+......+..-+..+....+.+.......-..-.+ .. --...+..++
T Consensus 145 ~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e---------~~~~D~~eL~~lr 215 (325)
T PF08317_consen 145 QLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE---------IESCDQEELEALR 215 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhhcCHHHHHHHH
Confidence 4444444455555555555555544444444444444444444444333322111110 11 1123344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
..+..+...++.++..+.+++.++...+.+.+.+.+.
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555554444443
No 28
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.27 E-value=6.3 Score=43.81 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=63.5
Q ss_pred cccccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Q 022272 71 ALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK------CKAAEQASE 144 (300)
Q Consensus 71 ~~~~~Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k------~~~~~~~i~ 144 (300)
+|+..|.+-----.-+-+.|++.+.++-|-+.||.+ -+-++..+..-...+....++.+.- +.+.-++++
T Consensus 1501 vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~----T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1501 VLALELPLTPEQIQQLTGEIQERVASLPNVDAILSR----TKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEAD 1576 (1758)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHh----hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333344557888888888886666654 3444445544444444444333322 223334455
Q ss_pred HHHHHHHHHHHcCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 145 DWYRKAQLALQKGEED--LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (300)
Q Consensus 145 ~~e~rA~~AL~~G~Ed--LAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~ 205 (300)
.-+..|+.|++.-+.+ +|++.|.+ .++.....+..+....+++.+|...+++|+.++.
T Consensus 1577 ~Aq~~a~~ai~~a~~~~~~a~~~l~k---v~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1577 VAQGEAQDAIQGADRDIRLAQQLLAK---VQEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666776665543 23333322 2233333334444444444444444444444443
No 29
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.24 E-value=5.4 Score=45.81 Aligned_cols=94 Identities=14% Similarity=0.160 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREA--LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (300)
Q Consensus 125 v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreA--L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ 202 (300)
.-..++...+++...+....+..+.. .-+...-..|-+++ +.+...+...+..+...+......+..|...+...+.
T Consensus 291 ~r~rk~eA~kkLe~tE~nL~rI~diL-~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~ee 369 (1486)
T PRK04863 291 LRRELYTSRRQLAAEQYRLVEMAREL-AELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNE 369 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555444443 22333333333222 1222222222223344444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022272 203 KIQEARSKKDTLKARAQ 219 (300)
Q Consensus 203 ki~e~k~k~~~LkAr~~ 219 (300)
++++.+.+...+.....
T Consensus 370 eLeeleeeleeleeEle 386 (1486)
T PRK04863 370 VVEEADEQQEENEARAE 386 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544433
No 30
>PRK02224 chromosome segregation protein; Provisional
Probab=95.22 E-value=3.7 Score=44.19 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (300)
Q Consensus 162 AreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~ 218 (300)
|+++-.........+..+..++.........+. .+..+...|.++......+....
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~ 615 (880)
T PRK02224 560 AAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKR 615 (880)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555556666666666655 46666666666666666666555
No 31
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.20 E-value=3.5 Score=40.55 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~ 151 (300)
+..++..++++.++.++.+.++++......++.++..+..+-.+++.++.
T Consensus 119 ~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q 168 (499)
T COG4372 119 EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666666666655555555555555444
No 32
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.18 E-value=4.5 Score=41.72 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 98 EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~r 149 (300)
++...-+...|..+-+.+.+-..+--.+..+...+...+..+..+...+...
T Consensus 281 ~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 281 EEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555544444433
No 33
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.11 E-value=2.7 Score=40.29 Aligned_cols=140 Identities=15% Similarity=0.196 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ 181 (300)
..|+..+..|+.+...+...+..+-.-.-.+..+++.+..++..+.+..... ..-+.+....+ .+.+.....
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~-~~~d~~eL~~l-------k~~l~~~~~ 218 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL-EDCDPTELDRA-------KEKLKKLLQ 218 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HhCCHHHHHHH-------HHHHHHHHH
Confidence 3445555555555555555555555555566666666666666655554443 23333333333 355555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHH
Q 022272 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQ 256 (300)
Q Consensus 182 ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~ 256 (300)
++......+..++.++..++.+|++...++..+....+.|+.... ...+++ ...+.++++++...+..
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~---~~r~~t----~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE---QCRGFT----FKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCC----HHHHHHHHHHHHHHHHH
Confidence 666666667777777777777777777777777766655544322 222332 34566777777666544
No 34
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.05 E-value=5.6 Score=44.77 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022272 103 ILEQAVLEMNDDLVKMRQATAQV 125 (300)
Q Consensus 103 mLeQ~Ireme~~l~kar~alA~v 125 (300)
.|++.+..++..|..+......+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~ 626 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEEL 626 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 35
>PRK11637 AmiB activator; Provisional
Probab=94.85 E-value=3.1 Score=41.23 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k 210 (300)
+..++.++...+..+..++..+..++.+|.+.+..
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443333
No 36
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.73 E-value=6.5 Score=46.07 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 105 eQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A 153 (300)
+..|.++++.+...+..++.+...++.++..+.++...+...++++..+
T Consensus 963 e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l 1011 (1930)
T KOG0161|consen 963 ENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555444
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.66 E-value=8 Score=41.96 Aligned_cols=118 Identities=15% Similarity=0.237 Sum_probs=90.8
Q ss_pred CCCcccccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 68 GGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (300)
Q Consensus 68 ~~~~~~~~Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e 147 (300)
||++-+.--+=|++|-. -...+.+.+=++-|-..--.|.+..+.+.+.+-+..+..+...+.++.++++.++..|.++.
T Consensus 359 G~~~~~~ss~qfkqlEq-qN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 359 GSDGQAASSYQFKQLEQ-QNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred CCCCcccchHHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333346777653 34566666667777655566777788888999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 148 RKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN 188 (300)
Q Consensus 148 ~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~ 188 (300)
++...|| |-|........++..+|+.+..|+..+.+++.
T Consensus 438 EQVDAAl--GAE~MV~qLtdknlnlEekVklLeetv~dlEa 476 (1243)
T KOG0971|consen 438 EQVDAAL--GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA 476 (1243)
T ss_pred HHHHHhh--cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Confidence 9999987 66778888888888888888888877766543
No 38
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=94.66 E-value=3 Score=37.14 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 127 ASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNN 192 (300)
Q Consensus 127 A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~ 192 (300)
..+..+.+=..+++..++.-...|+..++.|+.|-|+-+|.+|..++.-+.+...++-+.++.+..
T Consensus 23 ~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsd 88 (209)
T KOG2910|consen 23 TQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSD 88 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555566666778999999999999999999999998777777776665555554
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.59 E-value=10 Score=42.77 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~E 159 (300)
.-++..+-.....+..++..+.......++.+.++..+......|+.+...++..-.+
T Consensus 624 ~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 681 (1201)
T PF12128_consen 624 EELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKE 681 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666777777888888888888888888888888888888888777665443
No 40
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.33 E-value=4.1 Score=37.22 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=70.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Q 022272 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (300)
Q Consensus 96 ~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 175 (300)
-+|+-..-.+.-+.+....|..+...+-..-...+.++.+.......+..++.+...|-.. |..+-.+.......
T Consensus 47 ~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~-----~ee~e~k~~E~~rk 121 (237)
T PF00261_consen 47 LLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRR-----AEEAERKYEEVERK 121 (237)
T ss_dssp HHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----HHHHHHHHHHCHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 3343333444555566666666677777777777777888888888888888777776443 33444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~ 218 (300)
+..++..++.....++.+...+..|+..|..+...+..|-+..
T Consensus 122 l~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 122 LKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 5555555555555555555555555555555555555444433
No 41
>PRK11637 AmiB activator; Provisional
Probab=94.16 E-value=6.5 Score=38.92 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~ 144 (300)
++..|.+....|......+..+-..-..++.++..++.++.
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444333
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.95 E-value=3.6 Score=41.12 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=59.8
Q ss_pred ccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q 022272 96 SFEDPEKILEQAVLEMND-DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (300)
Q Consensus 96 ~~EDP~~mLeQ~Ireme~-~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (300)
++++-.+..+|.+-+|++ +|...++.....+.+.+.++.....++....-.+++...- +.--+.+..+.-..+..-..
T Consensus 329 qleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~-q~k~~k~~kel~~~~E~n~~ 407 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQL-QTKLKKCQKELKEEREENKK 407 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344445667777777777 6666666655555555555555544444444444433321 11111222222112211122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (300)
Q Consensus 175 ~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~ 218 (300)
-++.+..-...++...++++..+...+.+|.+++.++..|..-.
T Consensus 408 l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 408 LIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 22333333444555555556666666666666666666665543
No 43
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.71 E-value=9.7 Score=39.32 Aligned_cols=37 Identities=5% Similarity=0.242 Sum_probs=21.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChHHHHh
Q 022272 236 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFA 273 (300)
Q Consensus 236 ~~~a~~~feR~eeki~~~ea~aeA~~el~~~~Le~kla 273 (300)
+.+-...|....++|.....+.+. ..++-+.++..+.
T Consensus 443 p~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~ 479 (569)
T PRK04778 443 PEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLE 479 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHH
Confidence 345666777777777776666555 4443334444444
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.44 E-value=6 Score=40.12 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHh
Q 022272 240 LSAFEKMEEKVLTMESQADSL 260 (300)
Q Consensus 240 ~~~feR~eeki~~~ea~aeA~ 260 (300)
...++.+++.+...+.+.+.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l 318 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKL 318 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666665555443
No 45
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.33 E-value=15 Score=40.46 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcC-cHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA-QLALQKG-EEDLAREALKRRKSYADNANA 178 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA-~~AL~~G-~EdLAreAL~rk~~~e~~~~~ 178 (300)
+.-+....++.+..|.+.+.-+-++.....++++++.....++.++.+-| ..++.-+ -+||+++. ...++.++.
T Consensus 677 ~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei----~~~~~eIe~ 752 (1074)
T KOG0250|consen 677 ILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREI----KKKEKEIEE 752 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHH----HHHHHHHHH
Confidence 34566666777777777777777777777777777777777777776642 1111111 15666554 555667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (300)
Q Consensus 179 le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Aka 223 (300)
++..++++...++.+.....+++..+...+.+......+...++.
T Consensus 753 ~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~ 797 (1074)
T KOG0250|consen 753 KEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKE 797 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777777777777777777777777777776666666655555443
No 46
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.27 E-value=5.6 Score=40.90 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 113 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA--LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (300)
Q Consensus 113 ~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A--L~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v 190 (300)
.++..++..+..+-.....++.++..+..++.++..+-..+ ...|...-.+..+.+...++..+..++..+...+..+
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666666666666655555 3334444444444444444554444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022272 191 NNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 191 ~~L~~~l~~Le~ki~e~k~ 209 (300)
..|+.+...|...|..++.
T Consensus 172 ~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhhHHHHHHHHH
Confidence 4444444444444444443
No 47
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.96 E-value=5.1 Score=33.97 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (300)
|+..-++..+.++++...+....+..+-..-..++.+++.++..+.+....+...-..+-. + + .+...+..
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~--~-E------~l~rriq~ 84 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN--A-E------QLNRRIQL 84 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh--H-H------HHHhhHHH
Confidence 3344467777777777777777777766666666666666666666655555443221110 0 1 33444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 179 le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
|+.+++.....+......++....+..++.++..
T Consensus 85 LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 85 LEEELEEAEKKLKETTEKLREADVKAEHFERKVK 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4444444444444444444444444444444433
No 48
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.90 E-value=4.5 Score=41.42 Aligned_cols=60 Identities=22% Similarity=0.167 Sum_probs=29.5
Q ss_pred HHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 90 ANAILSSFE-DPEKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 90 ~n~~ld~~E-DP~~mLeQ~Ireme~~l~kar~al-A~v~A~~k~le~k~~~~~~~i~~~e~r 149 (300)
++..++.++ +...++++...++++...+++... ..+...+..++++++..+.++.+++++
T Consensus 23 a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~r 84 (514)
T TIGR03319 23 AEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERR 84 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333 334666666666666665555554 333444444444444445555444443
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.81 E-value=3 Score=37.63 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGN 233 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~ 233 (300)
..++..+++....+.+|+.+..+|+.++..++.+.+.+.+.....+-...++.-+.|
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~G 177 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYG 177 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444555556677777777777777777777777776666666666666554
No 50
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=5.1 Score=35.89 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 161 LAREALKRRKSYADNANALKAQ 182 (300)
Q Consensus 161 LAreAL~rk~~~e~~~~~le~q 182 (300)
-|..+|..|+.||.+...|..|
T Consensus 64 rAlrVLkQKK~yE~q~d~L~~Q 85 (218)
T KOG1655|consen 64 RALRVLKQKKMYENQKDSLDQQ 85 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666777777666666554
No 51
>PRK12704 phosphodiesterase; Provisional
Probab=92.51 E-value=14 Score=37.88 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 100 PEKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 100 P~~mLeQ~Ireme~~l~kar~al-A~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
...++++...++++...+++... ..+...+..+++++.+.+..+.+.++
T Consensus 40 Ae~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~ 89 (520)
T PRK12704 40 AKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEK 89 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667666666655555544 33444444444444444444444444
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.31 E-value=14 Score=37.42 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 191 NNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 191 ~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
..|..++..++.++..+...+..+
T Consensus 302 ~~l~d~i~~l~~~l~~l~~~i~~~ 325 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDTAIDEL 325 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 53
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.30 E-value=19 Score=38.84 Aligned_cols=22 Identities=27% Similarity=0.290 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 200 LESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 200 Le~ki~e~k~k~~~LkAr~~~A 221 (300)
.+..+++...+.+.+.+....|
T Consensus 415 ~kneL~~a~ekld~mgthl~ma 436 (1265)
T KOG0976|consen 415 AKNELQEALEKLDLMGTHLSMA 436 (1265)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3444555555555555544444
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.23 E-value=18 Score=38.49 Aligned_cols=37 Identities=5% Similarity=0.252 Sum_probs=22.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLE 133 (300)
Q Consensus 97 ~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le 133 (300)
..+.++.+...|..++.+...++.-+..++..+..-.
T Consensus 451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DK 487 (697)
T PF09726_consen 451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDK 487 (697)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777666666666666555554433
No 55
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.23 E-value=8.1 Score=34.50 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 81 RLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (300)
Q Consensus 81 Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~ 152 (300)
|+-.-+...-..+|+++||++.-|-|.|.-+.+++.-.+..+-......+.+++++...+.++....+....
T Consensus 36 k~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 36 KTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH 107 (194)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666799999999999999999999999999999999999999999999998888876665553
No 56
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.19 E-value=22 Score=39.34 Aligned_cols=106 Identities=13% Similarity=0.232 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (300)
Q Consensus 106 Q~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~ 185 (300)
-.|.++.+.+...+..+-.+-......+..+.+....+..++.+...+-..-+ ...=.++...++.++.|+.+++.
T Consensus 337 ~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~----~~~~~~~~e~e~k~~~L~~evek 412 (1074)
T KOG0250|consen 337 EEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN----NELGSELEERENKLEQLKKEVEK 412 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444333322211 12222333445666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 186 QKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 186 ~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
++.++..|+..+..+..++.+.+-++....
T Consensus 413 ~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~ 442 (1074)
T KOG0250|consen 413 LEEQINSLREELNEVKEKAKEEEEEKEHIE 442 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 666666666666666666665555555443
No 57
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=91.83 E-value=0.9 Score=42.66 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022272 207 ARSKKDTLKARAQSAKTA 224 (300)
Q Consensus 207 ~k~k~~~LkAr~~~Akaq 224 (300)
-..|++.|..-+..|+..
T Consensus 157 QN~KLEsLLqsMElAq~g 174 (305)
T PF15290_consen 157 QNKKLESLLQSMELAQSG 174 (305)
T ss_pred hHhHHHHHHHHHHHHHhc
Confidence 344555555555555544
No 58
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.70 E-value=16 Score=36.68 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Q 022272 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR---------------LLESKIQEARSKKDTLKA 216 (300)
Q Consensus 165 AL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~---------------~Le~ki~e~k~k~~~LkA 216 (300)
...+...+..++...+.++...+.....|+..+. .+..+|.+++.++..+..
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRL 268 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777776666665433 445556666666655543
No 59
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.63 E-value=21 Score=38.07 Aligned_cols=146 Identities=12% Similarity=0.207 Sum_probs=72.4
Q ss_pred chHHHHHHHHHHHHHH-----HhcccCCH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 77 NLFDRLARVVKSYANA-----ILSSFEDP-----EKILEQAVLEMNDDL-VKMRQATAQVLASQKRLENKCKAAEQASED 145 (300)
Q Consensus 77 sif~Rl~~li~a~~n~-----~ld~~EDP-----~~mLeQ~Ireme~~l-~kar~alA~v~A~~k~le~k~~~~~~~i~~ 145 (300)
++-..+..++....+- ..++...| -.+|-+++.-+.+++ .+....-..+...-+.++.+++..-.++.+
T Consensus 504 sF~~~Ik~lL~r~~~qPill~s~~k~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~ 583 (717)
T PF10168_consen 504 SFEKHIKSLLQRSSSQPILLKSSDKSSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQE 583 (717)
T ss_pred hHHHHHHHHhcCCCCCCeecCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566776665331 23455543 366767766666662 333333333333334444444444444444
Q ss_pred HHHHHHHHHHcCcHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 146 WYRKAQLALQKGEEDLA---REALKRRKSYADNANALKAQLDQ----QKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (300)
Q Consensus 146 ~e~rA~~AL~~G~EdLA---reAL~rk~~~e~~~~~le~ql~~----~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~ 218 (300)
.++. +..++...+.|| ..+..+...+.+++..+-..+.. .......++..++.++.++..++...+.++.+.
T Consensus 584 l~e~-~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 584 LQEE-RKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 222333333344 23344444444444444443332 333445566666667777777777777666665
Q ss_pred HHHHH
Q 022272 219 QSAKT 223 (300)
Q Consensus 219 ~~Aka 223 (300)
+.++.
T Consensus 663 ~~Q~~ 667 (717)
T PF10168_consen 663 DYQQR 667 (717)
T ss_pred HHHHH
Confidence 55443
No 60
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.53 E-value=29 Score=39.46 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 174 ~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
..+..+...++..+..+..+...+..++.+|......+..+.-.
T Consensus 977 ~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dn 1020 (1311)
T TIGR00606 977 TELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDN 1020 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444433
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.29 E-value=12 Score=34.58 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=58.0
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCcHHHHHHH
Q 022272 89 YANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ---LALQKGEEDLAREA 165 (300)
Q Consensus 89 ~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~---~AL~~G~EdLAreA 165 (300)
.+..-+++++--..=..-++..++..+..++..+...--....++.++.+++..+.+...+-. ..+...-++-...+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~a 93 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRA 93 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 444444444432333444455666666666666666666666666666666665555554432 22322222222222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 166 -LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 166 -L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
-.+......+...++.++..+...+..+...+..+..++...+.....+
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333444444444444444444444444444444444444433333
No 62
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=91.26 E-value=20 Score=37.02 Aligned_cols=153 Identities=16% Similarity=0.248 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA----------------------------SEDWYRKAQLA 153 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~----------------------------i~~~e~rA~~A 153 (300)
.-+++.|.++++++......+..+......-...+.++... ++..-..-...
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l 183 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL 183 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666655555555555554444444433333 33333344455
Q ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 022272 154 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSK---KDTLKARAQSAKTATK 226 (300)
Q Consensus 154 L~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~----~L~~~l~~Le~ki~e~k~k---~~~LkAr~~~Akaq~~ 226 (300)
...||-.-|++.|......-. .++..++..=.-+. .+-.++.+|+.-+.+|..+ ...+.-.........+
T Consensus 184 t~~GD~~~A~eil~~l~~~~~---~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~ 260 (560)
T PF06160_consen 184 TENGDYLEAREILEKLKEETD---ELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQ 260 (560)
T ss_pred HHCCCHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence 677888888888766544333 33333332222222 2333444444444444433 1111111222222222
Q ss_pred HHH---HhcCCCCCcHHHHHHHHHHHHHhHHHHH
Q 022272 227 VSE---MLGNVNTSSALSAFEKMEEKVLTMESQA 257 (300)
Q Consensus 227 v~~---~~~~~~~~~a~~~feR~eeki~~~ea~a 257 (300)
+.. .+..++.+.+...++.|.++|+.+....
T Consensus 261 l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~l 294 (560)
T PF06160_consen 261 LEEALALLKNLELDEVEEENEEIEERIDQLYDIL 294 (560)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 3345566777888888888887665443
No 63
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.23 E-value=12 Score=34.51 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH---HHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK---RRKSYADNANA 178 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~---rk~~~e~~~~~ 178 (300)
.-|+.-+..++++..+++..+-........|+.+...++.....++.++..|.... ..|...+.. .+..++..+..
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~-~rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEK-QRLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999999999999999999999999999888887763332 223333221 22233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 179 le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
++..+..+......-......++.++..++.
T Consensus 87 ~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 87 AEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333333344444433333
No 64
>PF13166 AAA_13: AAA domain
Probab=91.12 E-value=16 Score=38.23 Aligned_cols=63 Identities=13% Similarity=0.292 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ-SAKTATKVSEMLGNV 234 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~-~Akaq~~v~~~~~~~ 234 (300)
+...+..+...+......+..+...+..++..+...+.+...|..... ...+...+|..+..+
T Consensus 408 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 408 LKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444555555666666666666666666666677666666666655 556666777766544
No 65
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=8.5 Score=31.83 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ---LALQKGEEDLAREALKRRKSYADNANALKAQL 183 (300)
Q Consensus 107 ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~---~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 183 (300)
.+.+.-.++......+..++..+..++.++.+...-..+++.-.. ....-|+ .|.+. +.+.-...|+...
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~------llvk~-~k~~~~~eL~er~ 79 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGN------LLVKV-SKEEAVDELEERK 79 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhh------HHhhh-hHHHHHHHHHHHH
Confidence 455666778888999999999999999999987776666654332 2333333 23332 4555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 184 DQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 184 ~~~~~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
+..+..+..|+.+.+.++.++++++.++.
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666655543
No 66
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=90.54 E-value=3.4 Score=42.03 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCK 137 (300)
Q Consensus 107 ~Ireme~~l~kar~alA~v~A~~k~le~k~~ 137 (300)
.|++++++|.+++..++.+.+....++.+++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 102 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAK 102 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655554444444443
No 67
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.41 E-value=16 Score=34.32 Aligned_cols=102 Identities=16% Similarity=0.253 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcccCC-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Q 022272 85 VVKSYANAILSSFED-P---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED 160 (300)
Q Consensus 85 li~a~~n~~ld~~ED-P---~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~Ed 160 (300)
.+.+.++.+-++.-. | ..+++..|+++...|..+...-+.+.. +++.+...+.++..+....
T Consensus 29 ~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~-------e~~~l~~e~~~~r~k~e~e------- 94 (312)
T PF00038_consen 29 RLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLEL-------EIDNLKEELEDLRRKYEEE------- 94 (312)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhh-------hhhhHHHHHHHHHHHHHHH-------
Confidence 344555555555322 1 355566666665555555555555444 4444444444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (300)
Q Consensus 161 LAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~ 205 (300)
......++..+..+...++........|...+..|+..|.
T Consensus 95 -----~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 95 -----LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555554444444
No 68
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.35 E-value=12 Score=37.54 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 183 (300)
.+|++.+.-......++..-.+.+.++-+++++.+++..+.+|+++-.. ++.-+.-|-+.-...+..+++.-+.++..+
T Consensus 352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~-~~E~n~~l~knq~vw~~kl~~~~e~~~~~~ 430 (493)
T KOG0804|consen 352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE-EREENKKLIKNQDVWRGKLKELEEREKEAL 430 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5566666666677777788888889999999999999999999887654 332222333333344444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022272 184 DQQKNVVNNLVSNTRLLES 202 (300)
Q Consensus 184 ~~~~~~v~~L~~~l~~Le~ 202 (300)
......+..|+++++.|--
T Consensus 431 ~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 431 GSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHhHhe
Confidence 5566666666666665543
No 69
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.34 E-value=18 Score=34.91 Aligned_cols=13 Identities=23% Similarity=0.118 Sum_probs=6.2
Q ss_pred cCccceeeeeccc
Q 022272 43 NGGVGALKVTRLR 55 (300)
Q Consensus 43 ~~~~~~~~~~~~~ 55 (300)
+|-+..+.|..-+
T Consensus 51 ~G~v~~i~V~eG~ 63 (423)
T TIGR01843 51 GGIVREILVREGD 63 (423)
T ss_pred CcEEEEEEeCCCC
Confidence 3445555554433
No 70
>PRK03918 chromosome segregation protein; Provisional
Probab=90.17 E-value=30 Score=37.20 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 022272 78 LFDRLARVVKSYANAILS 95 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld 95 (300)
+|....-+-.|.+..++.
T Consensus 125 ~f~~~~~~~Qg~~~~~~~ 142 (880)
T PRK03918 125 VFLNAIYIRQGEIDAILE 142 (880)
T ss_pred HhceeEEEeccchHHHhc
Confidence 454444455677777653
No 71
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.93 E-value=19 Score=34.68 Aligned_cols=18 Identities=11% Similarity=-0.032 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022272 131 RLENKCKAAEQASEDWYR 148 (300)
Q Consensus 131 ~le~k~~~~~~~i~~~e~ 148 (300)
.++.+++.++.++..++.
T Consensus 148 ~l~~~i~~~~~~i~~~~~ 165 (423)
T TIGR01843 148 LILAQIKQLEAELAGLQA 165 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 72
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.66 E-value=15 Score=33.01 Aligned_cols=108 Identities=15% Similarity=0.233 Sum_probs=53.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Q 022272 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (300)
Q Consensus 96 ~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 175 (300)
+.-.|..+|.+--|.+......+.++....-.++|.+- .+| +.--+.|+.+-++--.........+
T Consensus 6 k~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklv-------aeI-------Kk~AK~gq~~A~KimAkdLvRtR~~ 71 (224)
T KOG3230|consen 6 KKKTPAELLRENQRALNKATRELERERQKLELQEKKLV-------AEI-------KKTAKQGQMDAVKIMAKDLVRTRRY 71 (224)
T ss_pred CCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-------HHHHHcccHHHHHHHHHHHHHHHHH
Confidence 44578888888777777766665554443333333222 222 2223678877666553333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~ 235 (300)
+..+ .. ++++|+-.--+..+|++....+++.+-+..++.++|
T Consensus 72 i~kf-----------~~-------~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MN 113 (224)
T KOG3230|consen 72 IKKF-----------QN-------MKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMN 113 (224)
T ss_pred HHHH-----------HH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 2222 12 333344444444455555555555555555555544
No 73
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.55 E-value=34 Score=36.93 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=60.0
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCcHHHHHHHHHH
Q 022272 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA-LQKGEEDLAREALKR 168 (300)
Q Consensus 90 ~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A-L~~G~EdLAreAL~r 168 (300)
++.+|+.-+.-+.-|+-.|+++++.|..++..+....+.+..+..++............+...+ +.-|+-+ .+
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~------~E 302 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKK------SE 302 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH------HH
Confidence 3444555555566677777777888877777766666666666555555544443333221111 1111111 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~ 218 (300)
...+...+..+..+.......++.|+..+...+....-+....+.|..++
T Consensus 303 ~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl 352 (775)
T PF10174_consen 303 LEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL 352 (775)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11223333334444444455555555555554444444444444444443
No 74
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.41 E-value=21 Score=37.86 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Q 022272 106 QAVLEMNDDLVKMRQATAQVLASQ-------KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (300)
Q Consensus 106 Q~Ireme~~l~kar~alA~v~A~~-------k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (300)
..|.+++.++.+++..+++..... ..++.+++.++.++.+--.+....+. .-...+..+...++.++..
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~----~~~~~a~~~~~~L~~~l~~ 363 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLL----MQADAAQARESQLVSDVNQ 363 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 678888888888888777766643 34444555555544433333222221 1112222333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATK 226 (300)
Q Consensus 179 le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~ 226 (300)
++.++.+.- .....+..|+.+.+-.+.-.+.+..|.+.++.+..
T Consensus 364 ~~~~~~~~~----~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~ 407 (754)
T TIGR01005 364 LKAASAQAG----EQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQN 407 (754)
T ss_pred HHHHHHhCc----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 433333221 22445566667777777777777777776665553
No 75
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.38 E-value=41 Score=37.69 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL 154 (300)
..++.....+.....+-+..-..+..++.+...+.+++.....+.
T Consensus 381 ~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~ 425 (1293)
T KOG0996|consen 381 ELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKAR 425 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444455555555555555555555555443
No 76
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.31 E-value=10 Score=40.41 Aligned_cols=78 Identities=15% Similarity=0.271 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHH-HH---HHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSY-AN---AILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 78 if~Rl~~li~a~-~n---~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A 153 (300)
+|.+-..+|+-. +. .+-+.++--.+.|...+.+--+.|.+++.....+-...+.+..+|+++...-+.+.+|+..-
T Consensus 540 lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 540 LLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677776666644 22 22223333445555555555556666666666666666667777777777777777666654
Q ss_pred HH
Q 022272 154 LQ 155 (300)
Q Consensus 154 L~ 155 (300)
++
T Consensus 620 l~ 621 (717)
T PF10168_consen 620 LQ 621 (717)
T ss_pred HH
Confidence 33
No 77
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.27 E-value=18 Score=33.40 Aligned_cols=111 Identities=12% Similarity=0.209 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLA-----SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A-----~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (300)
..|...|..+...|..+-..+...-. ....+.+.+++++....+...+= =.+....|..-+..-..+-..+
T Consensus 90 ~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~----f~~~~~~Ae~El~~A~~LL~~v 165 (264)
T PF06008_consen 90 QDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD----FTPQRQNAEDELKEAEDLLSRV 165 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443333 44556666666666666666552 1222334444444444444433
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NAL-KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 177 ~~l-e~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
... ..-+.+.+.-...+...+.+...|+.+++.-......
T Consensus 166 ~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 166 QKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQN 206 (264)
T ss_pred HHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 3444444444444444555555555555444444333
No 78
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.12 E-value=6.1 Score=39.87 Aligned_cols=53 Identities=11% Similarity=0.240 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Q 022272 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (300)
Q Consensus 107 ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~E 159 (300)
.||.+--++.++|..+..++.+-+.+..+-+++++.......+...||...+.
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~ 112 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQ 112 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhH
Confidence 45577777888888888888889999999999999999999999998877553
No 79
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.92 E-value=36 Score=36.65 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (300)
+.++..|....++.+..++.....|.-.++.+.-|+..|-.+.+
T Consensus 418 ~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~ 461 (1118)
T KOG1029|consen 418 RQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQ 461 (1118)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444445555555555555555555555555555554443
No 80
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.90 E-value=31 Score=35.64 Aligned_cols=16 Identities=38% Similarity=0.628 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHcCCC
Q 022272 279 SVDDDLANLKKELSGS 294 (300)
Q Consensus 279 ~vddeLarLKa~l~~~ 294 (300)
..|.|++..++=|.+.
T Consensus 374 ~Ld~EI~~YRkLLege 389 (546)
T KOG0977|consen 374 SLDAEIAAYRKLLEGE 389 (546)
T ss_pred HHHhHHHHHHHHhccc
Confidence 5677777776665443
No 81
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.53 E-value=40 Score=37.13 Aligned_cols=140 Identities=18% Similarity=0.268 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA--REALKRRKSYADNANALKAQLDQQK 187 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLA--reAL~rk~~~e~~~~~le~ql~~~~ 187 (300)
|++.......+.+..-...-..+++.++.+...++.+.++-.. ++.-++= +.=......+......+....+.++
T Consensus 185 ~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~---~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k 261 (1072)
T KOG0979|consen 185 DLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERK---KSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAK 261 (1072)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccchHhhhHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444433221 1111111 1112233456667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHH
Q 022272 188 NVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQ 256 (300)
Q Consensus 188 ~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~ 256 (300)
..+..+...+..++.++.+++.++..+..+.... +..++++.... -...+-|+++++++......
T Consensus 262 ~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~--~~~~~e~~~k~--~~~~ek~~~~~~~v~~~~~~ 326 (1072)
T KOG0979|consen 262 KELRKLEKEIKPIEDKKEELESEKKETRSKISQK--QRELNEALAKV--QEKFEKLKEIEDEVEEKKNK 326 (1072)
T ss_pred HHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHH--HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777666665554332 22233332221 12234444555555444433
No 82
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=88.53 E-value=60 Score=38.51 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (300)
.+...+..+..++......+..|+...+.++..+.+++..+..+.+-.+
T Consensus 1495 ~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le 1543 (1930)
T KOG0161|consen 1495 NLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALE 1543 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555555555555555555555555555555433
No 83
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=88.51 E-value=26 Score=34.37 Aligned_cols=129 Identities=17% Similarity=0.219 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 022272 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL--- 154 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL--- 154 (300)
|-.-+..++.-..+++-....--...|.+-|.++++...++.-.+..++.+-...++.+..++..+.+-+.--..|-
T Consensus 223 LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL 302 (384)
T PF03148_consen 223 LREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRL 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444444444444444444577788888888888888888888888888888888888888877776655442
Q ss_pred --HcCc------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 155 --QKGE------EDLAREAL-KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (300)
Q Consensus 155 --~~G~------EdLAreAL-~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e 206 (300)
...+ -|-|...| .+...+.+.+..|+..+...+.....|......|+..|.-
T Consensus 303 ~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~ 363 (384)
T PF03148_consen 303 ENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAV 363 (384)
T ss_pred hhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 14444444 5677777777777777777777777777777777666553
No 84
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.97 E-value=41 Score=35.94 Aligned_cols=117 Identities=17% Similarity=0.160 Sum_probs=61.4
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q 022272 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (300)
Q Consensus 95 d~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (300)
-.+|.--..|-..+++...++..++.++......-.+|..+++.+...-..-+.....--.+++... .....|+-
T Consensus 275 ~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~-----~d~~~ye~ 349 (717)
T PF09730_consen 275 LQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSH-----EDGDYYEV 349 (717)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccc-----cccchhhh
Confidence 3445445566667777777777777777766666666666666655532222222211111111000 00111222
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 175 N---ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 175 ~---~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
. ...|+..|......+..|+..+..|+.++...+.+...-+.
T Consensus 350 Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~ 394 (717)
T PF09730_consen 350 DINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKD 394 (717)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24456666666777777777777776666666654444433
No 85
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.95 E-value=31 Score=34.56 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----cH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG----EE---DLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (300)
Q Consensus 122 lA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G----~E---dLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~ 194 (300)
-.+.+.+.-+|..+|..++.+..+-+-+|..+|.-- +| -++|++-.++..++-.+..++.........+..|+
T Consensus 245 ~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlk 324 (502)
T KOG0982|consen 245 SSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLK 324 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777777777777777777776532 22 24456666666666666677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 195 SNTRLLESKIQEARSKKDTLKARA 218 (300)
Q Consensus 195 ~~l~~Le~ki~e~k~k~~~LkAr~ 218 (300)
....+|....+.+...++.+.-|.
T Consensus 325 sl~dklaee~qr~sd~LE~lrlql 348 (502)
T KOG0982|consen 325 SLADKLAEEDQRSSDLLEALRLQL 348 (502)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHH
Confidence 777777666666666666665553
No 86
>PRK03918 chromosome segregation protein; Provisional
Probab=87.74 E-value=43 Score=35.95 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ 202 (300)
+...+..+...+......+..++..+..++.
T Consensus 671 l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~ 701 (880)
T PRK03918 671 LSRELAGLRAELEELEKRREEIKKTLEKLKE 701 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433
No 87
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.35 E-value=38 Score=34.86 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 183 (300)
+.+.+++....+.++++.+.+........+++++.++.++++++.- .++.|+++-=..-..+....++-.+.+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~---~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~ 235 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA---DLQPGEDEALEAEQQRLSNLEKLRELSQNAL 235 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC---CcCCCcHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 4445555666666666666766666677777777777776666543 2456665433333333333444444443333
Q ss_pred H
Q 022272 184 D 184 (300)
Q Consensus 184 ~ 184 (300)
.
T Consensus 236 ~ 236 (563)
T TIGR00634 236 A 236 (563)
T ss_pred H
Confidence 3
No 88
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=87.00 E-value=13 Score=29.31 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022272 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G 157 (300)
+|..+..+|.+.+......+ .+|+..=+-.-..+.++...++.+-..-..+..++.++
T Consensus 4 ~f~~~~~~v~~el~~t~~d~----~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l------------------ 61 (99)
T PF10046_consen 4 MFSKVSKYVESELEATNEDY----NLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEEL------------------ 61 (99)
T ss_pred HHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 57777777777766655443 34444444444444444444444333333333333322
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (300)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e 206 (300)
..+-+++..++.++..++..+..|.....+||.|+..
T Consensus 62 ------------~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 62 ------------QPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2344556666667777777777777777778777754
No 89
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.73 E-value=44 Score=34.99 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 130 KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 130 k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
..+..++..++.++.+...+...+ -+++-......+...++..+..++..+......+..++..+..++.++..+..
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~---~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTI---PSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTK 470 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555554444443322 12233355556666666667777777766666666666666666666655544
Q ss_pred HHH
Q 022272 210 KKD 212 (300)
Q Consensus 210 k~~ 212 (300)
+..
T Consensus 471 ~~~ 473 (650)
T TIGR03185 471 QKI 473 (650)
T ss_pred HHH
Confidence 443
No 90
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.53 E-value=19 Score=30.52 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=5.0
Q ss_pred HHHHHHHHhHHH
Q 022272 244 EKMEEKVLTMES 255 (300)
Q Consensus 244 eR~eeki~~~ea 255 (300)
+.++.|++.++.
T Consensus 125 ~~~E~k~eel~~ 136 (143)
T PF12718_consen 125 DQWEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 91
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.11 E-value=36 Score=33.43 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 197 TRLLESKIQEARSKKDTLKARAQSAK 222 (300)
Q Consensus 197 l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (300)
+..|+.+++-.+...+.|..|.+.++
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 92
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=86.09 E-value=5.6 Score=30.48 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=54.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022272 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (300)
Q Consensus 96 ~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~ 156 (300)
.+.|.+.+|...|.++++.=..+.+.+..+...+..+.++...++.+...|+++...-|-+
T Consensus 15 qAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446788999999999999999999999999999999999999999999999998876644
No 93
>PRK00846 hypothetical protein; Provisional
Probab=85.79 E-value=8.4 Score=29.44 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (300)
-...++.+..|+..+.-++..++.|...+-.....|..++.+...|+-|.....
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678888899999999999999999988888889999888888887776654
No 94
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.66 E-value=19 Score=29.75 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~ 146 (300)
|--.||..+-++..++..++++.+.+..+..++-.+-...+.+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888888888877777777766666655
No 95
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=85.52 E-value=20 Score=34.72 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 161 LAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
|-|++.+.......-...|+..+.++..-++.=...|.+|++|++++--+...|..-
T Consensus 167 LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQl 223 (401)
T PF06785_consen 167 LNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQL 223 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555666677888888888888888889999999999987777766543
No 96
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=85.49 E-value=20 Score=29.91 Aligned_cols=95 Identities=13% Similarity=0.152 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (300)
Q Consensus 112 e~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~ 191 (300)
+.....+...++.+.......+.++..+.....+|..+...-...|-. +.....+..-+..|...+.++...+.
T Consensus 15 ~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~------~~~l~~~~~fl~~L~~~i~~q~~~v~ 88 (146)
T PRK07720 15 ENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLS------IQEIRHYQQFVTNLERTIDHYQLLVM 88 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888888888899999999999999888776666643 33335566667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022272 192 NLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 192 ~L~~~l~~Le~ki~e~k~k~~ 212 (300)
.++..+..-...+.+...++.
T Consensus 89 ~~~~~ve~~r~~~~ea~~~~k 109 (146)
T PRK07720 89 QAREQMNRKQQDLTEKNIEVK 109 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 766666666555555544443
No 97
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=85.34 E-value=6.6 Score=29.06 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (300)
+++.+..|+..+.-++..++.|..-+-....+|..++.+...|..+....
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777777777777777777777777777777777777666554
No 98
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.10 E-value=34 Score=32.15 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCc
Q 022272 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED----WYRKAQLALQKGE 158 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~----~e~rA~~AL~~G~ 158 (300)
.-..-|+-.|.+....+...+..+.+.-++-+.++.+++.+...|.+ +.+||+.+-..|-
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~ 115 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGT 115 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33455666777777778888888888888888888888888777765 4567887777776
No 99
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=84.90 E-value=38 Score=32.57 Aligned_cols=53 Identities=21% Similarity=0.103 Sum_probs=27.2
Q ss_pred CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 99 DP~---~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A 153 (300)
||+ .+.+-.+..++.-+...+... ......-++.++..++.+..+.+.+...-
T Consensus 141 dP~~A~~ian~l~~~~~~~i~~~~~~~--~~~a~~fl~~ql~~~~~~l~~ae~~l~~f 196 (362)
T TIGR01010 141 DAEEAQKINQRLLKEGERLINRLNERA--RKDTIAFAENEVKEAEQRLNATKAELLKY 196 (362)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 884 566666554555444432222 22333455566666666666555554443
No 100
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=84.87 E-value=33 Score=31.77 Aligned_cols=113 Identities=20% Similarity=0.208 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCc--HHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA---LQKGE--EDLAREALKRRKSYADNANA 178 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A---L~~G~--EdLAreAL~rk~~~e~~~~~ 178 (300)
||..+..++.-+...+..+..+.+....+.+.+..++...++++++...- ++.-+ -+-++..+ ....-+.+...
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~a 93 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRA 93 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHH
Confidence 44444444444444444555555555555555554444444444443211 00000 01112222 11222344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 179 le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
|...++..+.....|...+..+..++..++.++..++-+
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555554443
No 101
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.79 E-value=45 Score=33.34 Aligned_cols=111 Identities=17% Similarity=0.149 Sum_probs=60.1
Q ss_pred hcccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 022272 94 LSSFEDPE--KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 171 (300)
Q Consensus 94 ld~~EDP~--~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~ 171 (300)
+..-|||. .-+-.+++-|...+.+.-.++......-...++.+...+.+... +..........|++.-.+++
T Consensus 136 l~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~----~~~eq~~q~~kl~~~~~E~k-- 209 (420)
T COG4942 136 LVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTT----LLSEQRAQQAKLAQLLEERK-- 209 (420)
T ss_pred hcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--
Confidence 44456663 44555566665555555555555544444444444444443332 22223333444555444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
.....++.++...+...++|..+-..|+..|..++.+..
T Consensus 210 --k~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 210 --KTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334456666777777777777777777777777665544
No 102
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.60 E-value=82 Score=36.18 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
+++++..+....+.....+..-+..+.+++.++.+...+.......
T Consensus 338 l~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~ 383 (1353)
T TIGR02680 338 ARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERE 383 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444455555555544444444443
No 103
>PRK04406 hypothetical protein; Provisional
Probab=84.50 E-value=12 Score=28.42 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (300)
.++..+..|+..+.-++..++.|..-+-.....|..++++...|.-|...
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888888888888888888888888888666544
No 104
>PRK00736 hypothetical protein; Provisional
Probab=84.24 E-value=8.7 Score=28.47 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (300)
.++.+..|+..+.-++..++.|..-+-+....|..++++...|.-|...
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888888888888888776654
No 105
>PLN02718 Probable galacturonosyltransferase
Probab=84.17 E-value=5.7 Score=41.26 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (300)
+|..+-|-.|+.|+++|..||.-+ .+|..+.-.+-..++...|.+.+.-.-.| ..+.||=..+..+....+..+..
T Consensus 158 ~~~~~~d~~v~~~~dql~~ak~y~--~~a~~~~~~~~~~el~~~i~e~~~~l~~~--~~d~~lp~~~~~~~~~m~~~~~~ 233 (603)
T PLN02718 158 QPRRATDEKVKEIRDKIIQAKAYL--NLAPPGSNSQLVKELRLRTKELERAVGDA--TKDKDLSKSALQRMKSMEVTLYK 233 (603)
T ss_pred CcccCcHHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHhcc--cCCCCCCHhHHHHHHHHHHHHHH
Confidence 567889999999999999999987 77777777778888888998888877777 55666999998887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 179 le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
-+.....-...+.+|+.-+..+|.++...+.+-
T Consensus 234 a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~q~ 266 (603)
T PLN02718 234 ASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQA 266 (603)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777888888888888877776655443
No 106
>PRK09343 prefoldin subunit beta; Provisional
Probab=84.12 E-value=22 Score=29.19 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
|-..+...-..+...++.+..+......++.++.+.+.-..+++.
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555666677777888888888888888888876666655543
No 107
>PRK04325 hypothetical protein; Provisional
Probab=84.02 E-value=11 Score=28.29 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (300)
..++.+..|+..+.-++..++.|..-+-+....|..++++...|.-|...
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888888888888888888888888888766554
No 108
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=83.89 E-value=33 Score=33.52 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~r 149 (300)
+.+..+.+++..++.+.+.-+.++.++...+..++..+..
T Consensus 88 ~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~ 127 (352)
T COG1566 88 DYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQ 127 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666655555443
No 109
>PRK00295 hypothetical protein; Provisional
Probab=83.72 E-value=12 Score=27.70 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (300)
.++.+..|+..+.-++..++.|..-+-+....|..++++...|..|...
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888888888888888877777666554
No 110
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.67 E-value=30 Score=30.47 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (300)
+...++..+......++.+......|.-.+..++.++..++.+-..|.-|.-
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555566666666666666667777777777777776643
No 111
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.66 E-value=39 Score=37.22 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
-++.+..++..+..+......++..|..|+.+...+
T Consensus 340 ~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l 375 (1200)
T KOG0964|consen 340 KKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDL 375 (1200)
T ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555544443
No 112
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=83.65 E-value=56 Score=33.48 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Aka 223 (300)
..+..+......+++.+..+..++.+|.......+..++-...|-+
T Consensus 390 ~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala 435 (522)
T PF05701_consen 390 EAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALA 435 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444455555554444444444444333
No 113
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=83.55 E-value=27 Score=29.72 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=32.1
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 99 DP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A 153 (300)
.| ..++++--..+.+++..+.....++-......+.++...+.++.+.-+.|...
T Consensus 45 ~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 100 (156)
T CHL00118 45 KPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKE 100 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 36666666666666766666666655555555555555555555544444443
No 114
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=83.43 E-value=26 Score=29.43 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e 147 (300)
.+|++-=..+.+.+..+...-.++.......+..+...+.+.....
T Consensus 34 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~ 79 (141)
T PRK08476 34 KFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIR 79 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544445555555555444444444555555555555544443
No 115
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.29 E-value=48 Score=34.68 Aligned_cols=105 Identities=16% Similarity=0.230 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCcHHHHHHHHHHHHH-------------HHHHHHHH
Q 022272 118 MRQATAQVLASQKRLENKCKAAEQASEDW-----YRKAQLALQKGEEDLAREALKRRKS-------------YADNANAL 179 (300)
Q Consensus 118 ar~alA~v~A~~k~le~k~~~~~~~i~~~-----e~rA~~AL~~G~EdLAreAL~rk~~-------------~e~~~~~l 179 (300)
-|.++|.+.-....++.++...+..+.+. .+++..-+-.|.- |+ +||..... ....+..+
T Consensus 343 ~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~-l~-eal~~~~e~~~p~e~~~~~~~e~~ei~~~ 420 (652)
T COG2433 343 ERDALAAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYP-LA-EALSKVKEEERPREKEGTEEEERREITVY 420 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHeecCCc-HH-HHHHHHHhhhccccccccccccccchhHH
Confidence 46677877777777888888887777665 4555555555652 11 11111111 11122445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (300)
Q Consensus 180 e~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq 224 (300)
...+......++.|+.....|+..+.+++...++|.++...++..
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666666666666666666666665555444
No 116
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.26 E-value=69 Score=34.27 Aligned_cols=63 Identities=21% Similarity=0.376 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSE 229 (300)
Q Consensus 165 AL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~ 229 (300)
++.+....-+..+.|..+++.++++++.+...-.+|...++.++.+.+.|.. ..++-...++.
T Consensus 207 hlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~--~~~~~~~~mrd 269 (916)
T KOG0249|consen 207 HLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR--SSLEKEQELRD 269 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHhhhhhhcc
Confidence 3344444444555555555555555555555555555555555555555552 44444444443
No 117
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=83.20 E-value=44 Score=31.97 Aligned_cols=104 Identities=9% Similarity=0.124 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (300)
Q Consensus 111 me~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v 190 (300)
+...+.+++.++......-..++++++.++..+..+...... -..+...-....+....++.+....+..++...+..+
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~-~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l 150 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE-KGITENGYIINHLMSQADATRKLAEATRELAVAQERL 150 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444455566666666666655532211 1111212222334445566666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 191 NNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 191 ~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
.++..........+.....++-.+.
T Consensus 151 ~q~~~k~~~~q~~l~~~~~~~~~~i 175 (301)
T PF06120_consen 151 EQMQSKASETQATLNDLTEQRIDLI 175 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766666544
No 118
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=83.12 E-value=15 Score=34.12 Aligned_cols=83 Identities=10% Similarity=0.195 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q 022272 100 PEKILEQAVLEMNDDLVKMRQATAQVLAS-----QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (300)
Q Consensus 100 P~~mLeQ~Ireme~~l~kar~alA~v~A~-----~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (300)
-...|...|+|++..|.+++.-|...... ......++..+..+|.+.-.+|..+=..|+-|-|...+.+...+..
T Consensus 84 ~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ 163 (254)
T PF03194_consen 84 FLRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKE 163 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45788999999999999998887763322 1112678999999999999999999999999999888766555555
Q ss_pred HHHHHHHH
Q 022272 175 NANALKAQ 182 (300)
Q Consensus 175 ~~~~le~q 182 (300)
....++.+
T Consensus 164 ek~~le~~ 171 (254)
T PF03194_consen 164 EKEELEKE 171 (254)
T ss_pred HHHHHHhh
Confidence 55555443
No 119
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.93 E-value=62 Score=33.53 Aligned_cols=72 Identities=22% Similarity=0.375 Sum_probs=57.9
Q ss_pred HHHhcccC-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Q 022272 91 NAILSSFE-DP--EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (300)
Q Consensus 91 n~~ld~~E-DP--~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAr 163 (300)
.+.+..++ +| +..++-.++.+++++.+.+..+.+......-.++.++.+..++++-+...+. |++.+++|=.
T Consensus 248 ~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~-lq~~~d~Lk~ 322 (581)
T KOG0995|consen 248 EEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK-LQKENDELKK 322 (581)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33344333 55 6888899999999999999999999999999999999999999988888765 6777777743
No 120
>PRK02793 phi X174 lysis protein; Provisional
Probab=82.72 E-value=13 Score=27.90 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (300)
..++.+..|+..+.-++..++.|..-+-+....|..++++...|.-+...
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777888888888888888888888888888888888888877766544
No 121
>PRK02119 hypothetical protein; Provisional
Probab=82.54 E-value=15 Score=27.66 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (300)
....++.+..|+..+.-++..++.|..-+-+....|..++++...|.-+...
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788888888888888888888888888888888888888877665544
No 122
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.46 E-value=78 Score=34.28 Aligned_cols=51 Identities=8% Similarity=0.091 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~r 149 (300)
+-...|++-|.|.+-.+...+..+..+-......-.+++++++++.++++.
T Consensus 451 ~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 451 FKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677666666666666666555544444555555555444443
No 123
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=82.43 E-value=24 Score=37.57 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 163 reAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
-.||+++..+..+...+++++++....-++|..++..|...+.++++
T Consensus 212 maAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 212 MAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999998888885
No 124
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=82.42 E-value=32 Score=29.82 Aligned_cols=90 Identities=19% Similarity=0.302 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 183 (300)
..+.+..+..+|.+++..++.++..-..++.+.........+.... ...-.++--++|-. .+..++-.+
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~----f~~ysE~dik~AYe-------~A~~lQ~~L 93 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRN----FDRYSEEDIKEAYE-------EAHELQVRL 93 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcccCHHHHHHHHH-------HHHHHHHHH
Confidence 4566777888888888888888888777777766666555443322 33344555566633 344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022272 184 DQQKNVVNNLVSNTRLLESKI 204 (300)
Q Consensus 184 ~~~~~~v~~L~~~l~~Le~ki 204 (300)
.-......+|+..-..|+.++
T Consensus 94 ~~~re~E~qLr~rRD~LErrl 114 (159)
T PF05384_consen 94 AMLREREKQLRERRDELERRL 114 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333333
No 125
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=82.02 E-value=5.9 Score=40.01 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (300)
.+..+.+|+.+++..+.+.+.+......++.+|++++.+...|+.+...+
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456666777777777777777777777888888888888887776443
No 126
>PF13514 AAA_27: AAA domain
Probab=81.95 E-value=93 Score=34.83 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR----EALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (300)
Q Consensus 122 lA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAr----eAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l 197 (300)
+.........++.+++.++..+..|+.++..-+..-..++.. ..+......-.........++.....+..++..+
T Consensus 738 l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~ 817 (1111)
T PF13514_consen 738 LREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEEL 817 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666777788888888888777655443322111 3334444444444444445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022272 198 RLLESKIQEARSKKDTLK 215 (300)
Q Consensus 198 ~~Le~ki~e~k~k~~~Lk 215 (300)
..++.++..++.++..|.
T Consensus 818 ~~~~~~l~~~~~~l~~L~ 835 (1111)
T PF13514_consen 818 EQAEEELEELEAELAELL 835 (1111)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555443
No 127
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=81.78 E-value=19 Score=30.95 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCC
Q 022272 173 ADNANALKAQLDQQKNVVNNLVS---NTRLLESKIQEARSKKDTLKARAQSAKTATK----VSEMLGNVNT 236 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~---~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~----v~~~~~~~~~ 236 (300)
..+...++.++.....++..|+. ....|+.+|++++.+....+..+...-+... |..++.+.+.
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~aka 96 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAKA 96 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55677788888888888888877 7778888888888887755555444444333 4444444433
No 128
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=81.68 E-value=6.9 Score=28.37 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 022272 137 KAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (300)
Q Consensus 137 ~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 180 (300)
+.+++...+|..-|..|-+.||.+-||..+.-.+.+++.+...+
T Consensus 2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~ 45 (59)
T smart00685 2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR 45 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677888999999999999999999999888888877766554
No 129
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.66 E-value=77 Score=33.69 Aligned_cols=9 Identities=11% Similarity=0.224 Sum_probs=3.4
Q ss_pred HHHHHHhHH
Q 022272 246 MEEKVLTME 254 (300)
Q Consensus 246 ~eeki~~~e 254 (300)
++.++...+
T Consensus 357 L~~~l~~~~ 365 (754)
T TIGR01005 357 LVSDVNQLK 365 (754)
T ss_pred HHHHHHHHH
Confidence 333333333
No 130
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.32 E-value=74 Score=33.30 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (300)
Q Consensus 105 eQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~ 145 (300)
.+.+.++++.|..++..+..+...-+.+...+.++..+...
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~ 367 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEE 367 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666777766666666666666666666555555443
No 131
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.07 E-value=29 Score=32.56 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (300)
Q Consensus 115 l~kar~alA~v~A~~k~le~k~~~~~~~i~~~ 146 (300)
+......+-.+..+.+.++.+++.+..++.+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~ 64 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEI 64 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 132
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=80.91 E-value=59 Score=31.85 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHHHHhHHHHHHH
Q 022272 238 SALSAFEKMEEKVLTMESQADS 259 (300)
Q Consensus 238 ~a~~~feR~eeki~~~ea~aeA 259 (300)
..-.++.+|+.-|.+|+-+.-.
T Consensus 332 ~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHHHHHHHHHHHHhhhhhhe
Confidence 3466778888888887766543
No 133
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=80.89 E-value=63 Score=32.21 Aligned_cols=127 Identities=25% Similarity=0.277 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022272 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G 157 (300)
|=.-+..++.-..|++-..+..-+..+.--|+++++...+....++..+-+-...+..+..++..|.+-+.-.+.|..-=
T Consensus 250 LR~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRl 329 (421)
T KOG2685|consen 250 LREALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRL 329 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Confidence 44455566666667776666677888888999999999999999998888888888888888888887777777765432
Q ss_pred c-----------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 158 E-----------EDLAREAL-KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (300)
Q Consensus 158 ~-----------EdLAreAL-~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki 204 (300)
+ -|.|...| .+...+...+..|+..+++.+.....|......|+.+|
T Consensus 330 e~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di 388 (421)
T KOG2685|consen 330 ENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDI 388 (421)
T ss_pred HHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 14443332 23344444444444444444444444444444444443
No 134
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.80 E-value=46 Score=30.53 Aligned_cols=37 Identities=11% Similarity=0.283 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
+.++..++..++.....++..+..+.+++..+...+.
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444333
No 135
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.78 E-value=42 Score=30.04 Aligned_cols=127 Identities=22% Similarity=0.302 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 022272 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (300)
Q Consensus 79 f~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~ 158 (300)
-.+-+.=++.+-|++...-=+=++-|...|.+|+......+..+..+...-+++..-+..++.++.++......- .+.
T Consensus 7 He~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y-~kd- 84 (201)
T PF13851_consen 7 HEKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY-EKD- 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHH-
Confidence 344555566777777666556688899999999999999999999999999999999999999999888776652 221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 159 EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (300)
...+..++..+...+..+..|+-....|+.++..+..+++.|..+-..+
T Consensus 85 --------------K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 85 --------------KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223344444445555555556666666666666666666666554433
No 136
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=80.63 E-value=32 Score=28.64 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~ 189 (300)
=.+.....+...++.+.......+.++..+.....+|..+.......|=. ......+..-+..|...+..+...
T Consensus 13 l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~------~~~l~~~~~fi~~L~~~I~~q~~~ 86 (147)
T PRK05689 13 LAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMT------SSWWINYQQFLQQLEKAITQQRQQ 86 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667778888888888888899999988888888877665444432 123345556666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 190 VNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
+..++..+......+.+...++
T Consensus 87 v~~~~~~ve~~r~~~~~a~~~~ 108 (147)
T PRK05689 87 LTQWTQKVDNARKYWQEKKQRL 108 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666666555555544443
No 137
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=80.50 E-value=42 Score=29.90 Aligned_cols=47 Identities=21% Similarity=0.180 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
..|++.|+|.+..+.+...+|...-.+-....+-......++..+..
T Consensus 70 eqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~ 116 (188)
T PF05335_consen 70 EQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKA 116 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666555555555555555444444433
No 138
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.50 E-value=19 Score=27.01 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=53.1
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022272 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (300)
Q Consensus 95 d~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~ 156 (300)
..+.|.+.+|.-.|.++++.-....+.+..+-....-++++-+.+..+..-|+++.+.-|-+
T Consensus 14 qqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 14 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34457788999999999999888888888888888999999999999999999998876644
No 139
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.38 E-value=56 Score=31.32 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~ 152 (300)
-|..++. .-+.-|+..|.....+.+..-++.-...+......
T Consensus 114 lm~~Qf~-lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~ 155 (312)
T smart00787 114 LMDKQFQ-LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEG 155 (312)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 44566888888888888887766666666655443
No 140
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=80.16 E-value=68 Score=32.12 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 197 TRLLESKIQEARSKKDTLKARAQSAKTATKV 227 (300)
Q Consensus 197 l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v 227 (300)
+..|+..++-.+...+.+..|...++....+
T Consensus 357 l~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~ 387 (498)
T TIGR03007 357 LTQLNRDYEVNKSNYEQLLTRRESAEVSKQM 387 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 3344444444555555555666655555444
No 141
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.11 E-value=67 Score=34.67 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~ 156 (300)
++..|.++++...+..+....+......+++...+++.+.++++++-...+.+
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~ 570 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE 570 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443333333
No 142
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.03 E-value=57 Score=31.20 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (300)
.++.+.........++-.....+...+.++..+++.+.++...+.
T Consensus 82 ~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 82 ELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444445555555555555555544443
No 143
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=79.82 E-value=27 Score=36.16 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=27.8
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (300)
Q Consensus 95 d~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~ 152 (300)
..+-||..+|++.=..-.....+++..+-..-...+....++. -..+++.|.++...
T Consensus 146 ~~lp~~~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~ 202 (555)
T TIGR03545 146 SQLPDPRALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEA 202 (555)
T ss_pred ccCCCHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 3455888888865444444444444444433333332222222 14555555555544
No 144
>PRK11281 hypothetical protein; Provisional
Probab=79.46 E-value=1.2e+02 Score=34.37 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----HHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED-----LAREALKRRKSYADN 175 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~Ed-----LAreAL~rk~~~e~~ 175 (300)
.+.+-|.+++.-+-+.+......+.-+-+ ++++++.+++.+-..+-. ++++-.+. +....+ .++|..
T Consensus 58 ~k~~~~~l~~tL~~L~qi~~~~~~~~~L~----k~l~~Ap~~l~~a~~~Le-~Lk~~~~~~~~~~~~~~Sl---~qLEq~ 129 (1113)
T PRK11281 58 DKLVQQDLEQTLALLDKIDRQKEETEQLK----QQLAQAPAKLRQAQAELE-ALKDDNDEETRETLSTLSL---RQLESR 129 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHH-HhhccccccccccccccCH---HHHHHH
Confidence 35555666666666666665555443333 333333333333333322 22221111 111111 235666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Aka 223 (300)
+.+++.++++.+.....+.+++..+.++.+..+........|.+..+.
T Consensus 130 L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~ 177 (1113)
T PRK11281 130 LAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN 177 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666555555554444433
No 145
>PRK10869 recombination and repair protein; Provisional
Probab=79.27 E-value=82 Score=32.53 Aligned_cols=80 Identities=15% Similarity=0.024 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 183 (300)
+-+.+++.=..+.+++..+.++...+....++++-++.++++++.- .++.|+++-=..-..+....++-.+.+...+
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~---~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~ 231 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEF---APQPGEFEQIDEEYKRLANSGQLLTTSQNAL 231 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566667777777777777777778888888888777753 3567777544444445555555555555544
Q ss_pred HHH
Q 022272 184 DQQ 186 (300)
Q Consensus 184 ~~~ 186 (300)
+.+
T Consensus 232 ~~L 234 (553)
T PRK10869 232 QLL 234 (553)
T ss_pred HHh
Confidence 444
No 146
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=79.14 E-value=43 Score=29.27 Aligned_cols=55 Identities=9% Similarity=0.152 Sum_probs=33.3
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 99 DP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A 153 (300)
.| ..+|+.--..+.+.+..+.....++-......+.++...+.+....-+.|+..
T Consensus 54 ~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~e 109 (181)
T PRK13454 54 PRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAE 109 (181)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 36666666666666666666666665555566666666665555555555433
No 147
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.05 E-value=49 Score=29.83 Aligned_cols=17 Identities=0% Similarity=0.251 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022272 109 LEMNDDLVKMRQATAQV 125 (300)
Q Consensus 109 reme~~l~kar~alA~v 125 (300)
-+++.++.+++..++.+
T Consensus 96 p~le~el~~l~~~l~~~ 112 (206)
T PRK10884 96 PDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555555555543
No 148
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.03 E-value=85 Score=32.60 Aligned_cols=161 Identities=19% Similarity=0.261 Sum_probs=83.9
Q ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 022272 92 AILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 171 (300)
Q Consensus 92 ~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~ 171 (300)
.+||.+.+......+.++..=+...++++.+.......+...++.+-++-++++++. ..++-|+++-=.+=-.+...
T Consensus 143 ~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~---~~l~~gE~e~L~~e~~rLsn 219 (557)
T COG0497 143 QLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEE---LNLQPGEDEELEEERKRLSN 219 (557)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHhh
Confidence 355666554433335567777777888888888888888888888888888887764 34667755322222223333
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCCCcHH
Q 022272 172 YADNANALKAQLDQQK------NVVNNLVSNTRLLESKIQEARSKKDTLK-----ARAQSAKTATKVSEMLGNVNTSSAL 240 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~------~~v~~L~~~l~~Le~ki~e~k~k~~~Lk-----Ar~~~Akaq~~v~~~~~~~~~~~a~ 240 (300)
.++-.......++.+. .....|...+..|.. +.++-.+...+. +-.+...+...++..+.+++.+ .
T Consensus 220 ~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~-~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~D--p 296 (557)
T COG0497 220 SEKLAEAIQNALELLSGEDDTVSALSLLGRALEALED-LSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFD--P 296 (557)
T ss_pred HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--H
Confidence 3333333333333332 122222222222211 122222222222 2233444555566666665543 2
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 022272 241 SAFEKMEEKVLTMESQAD 258 (300)
Q Consensus 241 ~~feR~eeki~~~ea~ae 258 (300)
..++.+++|+.....-..
T Consensus 297 ~~L~~ve~Rl~~L~~l~R 314 (557)
T COG0497 297 NRLEEVEERLFALKSLAR 314 (557)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777777766654443
No 149
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.90 E-value=97 Score=33.20 Aligned_cols=62 Identities=24% Similarity=0.363 Sum_probs=51.1
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (300)
Q Consensus 91 n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~ 152 (300)
..++..-.+-+.-+.+-|.+++.++..+|..+..+.++..++.....++....+.++..-..
T Consensus 19 e~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~ 80 (717)
T PF09730_consen 19 ESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKR 80 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555667888899999999999999999999999999999999888888777765443
No 150
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.49 E-value=87 Score=32.43 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki 204 (300)
......|..+++.....+.+|+..+..+..+.
T Consensus 205 ~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 205 KEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555444444
No 151
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=78.47 E-value=49 Score=29.57 Aligned_cols=84 Identities=21% Similarity=0.257 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (300)
Q Consensus 115 l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~ 194 (300)
|......-+++-+.+..+++.+...+..+..+......+-... -.+..+.....+++..|+.+......++..|.
T Consensus 100 LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~-----~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ 174 (192)
T PF11180_consen 100 LADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQ-----QQVAARQQQARQEAQALEAERRAAQAQLRQLQ 174 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555666666655555555544433332221 12334444555555556655555555555555
Q ss_pred HHHHHHHHH
Q 022272 195 SNTRLLESK 203 (300)
Q Consensus 195 ~~l~~Le~k 203 (300)
.+|+.|+.+
T Consensus 175 ~qv~~Lq~q 183 (192)
T PF11180_consen 175 RQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHH
Confidence 555555443
No 152
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.28 E-value=27 Score=35.53 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k 135 (300)
..-|+..|+++++++.+++..+..+-+..+.++.-
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 107 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDI 107 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777776666666665555443
No 153
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.27 E-value=48 Score=29.32 Aligned_cols=111 Identities=24% Similarity=0.313 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (300)
Q Consensus 125 v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki 204 (300)
+.-..++|++.-..++++-.--..++..|+++|+.|.||--.+--..-.++ .+ + +
T Consensus 14 LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne-------------~~-----n-------~ 68 (203)
T KOG3232|consen 14 LKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNE-------------AV-----N-------Y 68 (203)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-------------HH-----H-------H
Confidence 334456677777777777667778899999999999998653221111111 11 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------CCCCcHHHHHHHHHHHHHhHHHHHHHh
Q 022272 205 QEARSKKDTLKARAQSAKTATKVSEMLGN-----------VNTSSALSAFEKMEEKVLTMESQADSL 260 (300)
Q Consensus 205 ~e~k~k~~~LkAr~~~Akaq~~v~~~~~~-----------~~~~~a~~~feR~eeki~~~ea~aeA~ 260 (300)
=.+-.+.+.+.+|.+.|-+..++...++| +|..-....+|++|.+.+.++-+.+-+
T Consensus 69 LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~m 135 (203)
T KOG3232|consen 69 LRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVM 135 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 22345566677777777777776665554 344445566777777777777766655
No 154
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.04 E-value=90 Score=32.34 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022272 192 NLVSNTRLLESKIQEAR 208 (300)
Q Consensus 192 ~L~~~l~~Le~ki~e~k 208 (300)
.|+.+++.++.+++..+
T Consensus 287 ~LkeqLr~~qe~lqaSq 303 (546)
T PF07888_consen 287 ALKEQLRSAQEQLQASQ 303 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 155
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=77.73 E-value=33 Score=27.14 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 113 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (300)
Q Consensus 113 ~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~---rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~ 189 (300)
..+...+..+..+......++.++.+...-..++.. -...=..-|. ++.+ ....+-.+.++..++.....
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~------vfv~-~~~~ea~~~Le~~~e~le~~ 78 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGN------VLVK-QEKEEARTELKERLETIELR 78 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhh------HHhh-ccHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555666666555444444432 1111112222 2222 33344455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 190 VNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
+..+..++..++.++.+++.++..
T Consensus 79 i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 79 IKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556555666666666655555543
No 156
>PLN02742 Probable galacturonosyltransferase
Probab=77.43 E-value=25 Score=36.22 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (300)
Q Consensus 105 eQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~ 184 (300)
|-.++.|+++|..||.-+ .+|..+.-.+-..++...|.+.+.-.-.|...++.=.-..+..+.+..+..+..-+....
T Consensus 73 ~~~~~~l~dql~~Ak~y~--~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~~~ 150 (534)
T PLN02742 73 TSFSRQLADQITLAKAYV--VIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDLHY 150 (534)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhccc
Confidence 456678999999999886 777777777788888888888887776665444321136776677777777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 185 QQKNVVNNLVSNTRLLESKIQEARSK 210 (300)
Q Consensus 185 ~~~~~v~~L~~~l~~Le~ki~e~k~k 210 (300)
.-...+.+|+..+..+|.++...+.+
T Consensus 151 d~~~~~~klr~~l~~~e~~~~~~~~q 176 (534)
T PLN02742 151 DSATTIMTLKAHIQALEERANAATVQ 176 (534)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777766655443
No 157
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.35 E-value=1.3e+02 Score=33.61 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+.++-++++.+..+...+..+..++..+..++.+...+.
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443
No 158
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=77.22 E-value=54 Score=29.38 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=38.0
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 99 DP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A 153 (300)
.| ..+|+.--..+..+|..+.....++-......+.++.+.+.+..+.-..|+..
T Consensus 76 ~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~e 131 (204)
T PRK09174 76 PRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREA 131 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 36777777777777777777777777777777777777777777666666443
No 159
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=76.52 E-value=18 Score=28.30 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH
Q 022272 190 VNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSAL 240 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~ 240 (300)
+.+++..+.+|....+.++.++....+....++.+++-.+...+++.++..
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~~V~ 75 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRDSVI 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHHHHH
Confidence 344455566677777777777777777777888887777777666555443
No 160
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.23 E-value=42 Score=30.76 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
++..+..+++.++...++.+..++..+..+..|+.+|+++..-+..+
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444433333
No 161
>PLN02829 Probable galacturonosyltransferase
Probab=76.08 E-value=15 Score=38.35 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 180 (300)
+.+-|-.++.|+++|..||.-+ .+|..+.-.+-..++...|.+.+.-.-.|-. +-||=..+..+.+..+.-+...+
T Consensus 178 ~~~~d~~v~~lkDql~~AkaY~--~iak~~~~~~l~~el~~~i~e~~r~l~~a~~--d~~lp~~~~~~~~~m~~~i~~ak 253 (639)
T PLN02829 178 TVMPDARVRQLRDQLIKAKVYL--SLPATKANPHFTRELRLRIKEVQRVLGDASK--DSDLPKNANEKLKAMEQTLAKGK 253 (639)
T ss_pred ccCchHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHhhccC--CCCCChhHHHHHHHHHHHHHHHH
Confidence 3677889999999999999885 6777777777788888888888666555544 77788888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k 210 (300)
.....-...+.+|+..+..+|.++...+.+
T Consensus 254 ~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q 283 (639)
T PLN02829 254 QMQDDCSIVVKKLRAMLHSAEEQLRVHKKQ 283 (639)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777778877777777776665443
No 162
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.91 E-value=1e+02 Score=33.47 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 124 QVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~i~~~e~rA~~A 153 (300)
.....+..+..+++.....++.|...++.|
T Consensus 748 ~l~~~q~~l~~~L~k~~~~~es~k~~~~~a 777 (970)
T KOG0946|consen 748 KLENDQELLTKELNKKNADIESFKATQRSA 777 (970)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 344444555555666666677777777755
No 163
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=75.86 E-value=77 Score=30.40 Aligned_cols=111 Identities=21% Similarity=0.251 Sum_probs=68.8
Q ss_pred CHH-HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Q 022272 99 DPE-KILEQAVLEMN-----------DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL 166 (300)
Q Consensus 99 DP~-~mLeQ~Ireme-----------~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL 166 (300)
+|+ ..+.+.|.++. ++.+-.+..+--.......++.+.+.++..++++..+|..-...+++++ .-+
T Consensus 182 ipe~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~--~~l 259 (307)
T PF15112_consen 182 IPEIVAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDS--KRL 259 (307)
T ss_pred ChHHHHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhh--HHH
Confidence 673 56666666665 4455555556666677788888888899888888777766544443332 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 167 ~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
+-...+-..=.+|...+...-..++.|..++.+++..|.+++.+.
T Consensus 260 ~~~~~fL~~NkDL~~~l~~e~qkL~~l~~k~~~~~~~v~~~~~~~ 304 (307)
T PF15112_consen 260 EVLKEFLRNNKDLRSNLQEELQKLDSLQTKHQKLESDVKELKSQM 304 (307)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHhhc
Confidence 444444444445554444444666666666777777666666543
No 164
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.55 E-value=83 Score=30.66 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=63.7
Q ss_pred ccccccccccccCccceeeeeccccccCCCCcccccCCCcccccCchHHHHHHHHHHHHHHHhcccCCH--HHHHHH---
Q 022272 32 MVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDP--EKILEQ--- 106 (300)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Msif~Rl~~li~a~~n~~ld~~EDP--~~mLeQ--- 106 (300)
.+++|+.++.-.||+..+-.-...-+-...- .|.|-. + |++.++++++.--+- ++.+++
T Consensus 169 ~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~---n~~~~~-~------------irasvisa~~eklR~r~eeeme~~~a 232 (365)
T KOG2391|consen 169 AYKPPLPPPPPPGGASALPYMTDDNAEPYPP---NASGKL-V------------IRASVISAVREKLRRRREEEMERLQA 232 (365)
T ss_pred CcCCCCCCCCCCCccccCcccCCCCCCcCCC---Cccccc-c------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678899999999987544332222211111 122211 2 555555444322211 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 022272 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (300)
Q Consensus 107 ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~ 158 (300)
.+.+++.--...+.....+.+....||+++..++..++=+..+.+.|+.+-.
T Consensus 233 eq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 233 EQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 2223333444455556677778888999999999999988888888776644
No 165
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=75.35 E-value=1.3e+02 Score=32.89 Aligned_cols=95 Identities=11% Similarity=0.138 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL---KRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (300)
Q Consensus 122 lA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL---~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~ 198 (300)
+-...-..-..+.+|+.+.....++...=...|.+.++ ..+..= .-+.+.++....+..++++...+...+.+..+
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~d-i~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e 490 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDD-IQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTE 490 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444444455666666666666666555555655543 222111 11113444445555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022272 199 LLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 199 ~Le~ki~e~k~k~~~LkAr 217 (300)
.....++.+++++..+.-+
T Consensus 491 ~~~~~le~l~~El~~l~~e 509 (980)
T KOG0980|consen 491 SQAKALESLRQELALLLIE 509 (980)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544433
No 166
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.25 E-value=39 Score=31.90 Aligned_cols=57 Identities=21% Similarity=0.327 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 159 EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+-|--.||.++..+|.++..|+.+-.+-.=+++.|+..+.+-+.+.++-+.+...|+
T Consensus 10 eGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~Lk 66 (307)
T PF10481_consen 10 EGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALK 66 (307)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 345668999999999999999999999888999999999998888888877777665
No 167
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=75.17 E-value=78 Score=30.13 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022272 107 AVLEMNDDLVKMRQATA 123 (300)
Q Consensus 107 ~Ireme~~l~kar~alA 123 (300)
.+.+++.++..++..+.
T Consensus 87 ~l~~a~a~l~~a~a~l~ 103 (346)
T PRK10476 87 TVAQAQADLALADAQIM 103 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555444443
No 168
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=75.08 E-value=19 Score=26.57 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
...+|..+.-.+..++++...+......|..|+..+..+..+...+.
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444444444444444444444444443
No 169
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=74.87 E-value=91 Score=32.93 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL 200 (300)
Q Consensus 161 LAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~L 200 (300)
+++.+.....+...++..++.++.+...+...|+..+..|
T Consensus 372 ~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l 411 (656)
T PRK06975 372 KTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555555555544444443
No 170
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=74.77 E-value=47 Score=27.47 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (300)
Q Consensus 105 eQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e 147 (300)
++.++++...+.+.+..+..+......+...+.++..-++..+
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777666666666666666665554444
No 171
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.65 E-value=62 Score=28.78 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=17.5
Q ss_pred cCCCcccccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Q 022272 67 QGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQA 107 (300)
Q Consensus 67 ~~~~~~~~~Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~ 107 (300)
+.|-++|-.++ |.=+..-|+.- .+.||...++-.
T Consensus 41 REg~A~Glm~~-f~~l~e~v~~l------~idd~~~~f~~~ 74 (190)
T PF05266_consen 41 REGMAVGLMVT-FANLAEKVKKL------QIDDSRSSFESL 74 (190)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHc------ccCCcHHHHHHH
Confidence 56667665543 33333333222 566776666533
No 172
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=74.47 E-value=84 Score=30.18 Aligned_cols=54 Identities=7% Similarity=0.152 Sum_probs=36.3
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ 129 (300)
Q Consensus 76 Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~ 129 (300)
-|+|+||+.=++..+..++.+++.-..-+|..+.+++..-.......+.+-...
T Consensus 72 ~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~ 125 (333)
T PF05816_consen 72 KGFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLY 125 (333)
T ss_pred hhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888776666777778888887777777776666666666666555443333
No 173
>PRK00295 hypothetical protein; Provisional
Probab=74.34 E-value=30 Score=25.56 Aligned_cols=46 Identities=4% Similarity=0.070 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
..++|.++.-.+..++.+...+.+....|..|+.++..+..+...+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444455555554444444444445555555444444443
No 174
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.88 E-value=41 Score=29.43 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ 202 (300)
...++++.++.+++..+..++.|+.+...+..
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666665555555544
No 175
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=73.81 E-value=44 Score=26.70 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK---AQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (300)
Q Consensus 108 Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~r---A~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~ 184 (300)
+.+.-..+...+..+..+......++.++.+...-+++++.- +..=..-|. .+.+ .+.++-...++..++
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~------vlv~-~~~~e~~~~l~~r~e 77 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGN------LLVK-TDKEEAIQELKEKKE 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhch------hhhe-ecHHHHHHHHHHHHH
Confidence 444555666677777777777777777777766665555432 111122222 2333 334555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 185 ~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
..+..+..|..++..++.++.+++.+...+
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666655544
No 176
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=73.73 E-value=21 Score=37.36 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 180 (300)
+.|-|-.++.|+++|..||.- -.+|..+.-.+-..++...|.+.+.-.-.|. .+.||=..++.+....+..+...+
T Consensus 192 ~~~~d~~vk~lkDQl~~AkaY--~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~--~d~dlp~~~~~k~~~M~~~l~~ak 267 (657)
T PLN02910 192 SPNSDSILKLMRDQIIMAKAY--ANIAKSNNVTNLYVSLMKQFRENKRAIGEAT--SDAELHSSALDQAKAMGHVLSIAK 267 (657)
T ss_pred ccCcHHHHHHHHHHHHHHHHH--HHHhccCCcHHHHHHHHHHHHHHHHHHhhcc--cccccCchHHHHHHHHHHHHHHHH
Confidence 467788899999999999987 4556556666667777777777776655543 677888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
.....-...+.+|+.-+..+|.++...+.+-
T Consensus 268 ~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs 298 (657)
T PLN02910 268 DQLYDCHTMARKLRAMLQSTERKVDALKKKS 298 (657)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877788888888888888877776655443
No 177
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=73.55 E-value=87 Score=29.96 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 188 NVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 188 ~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
-....+......++.++.-...+++.|
T Consensus 106 ~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 106 LELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444433
No 178
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=73.34 E-value=1.1 Score=36.60 Aligned_cols=49 Identities=12% Similarity=0.248 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~ 152 (300)
+|.+|..+...+..+....+.....-..+..++..+......+.+....
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 4556666666666666665555555555555555555555444444333
No 179
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=73.09 E-value=71 Score=28.75 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (300)
Q Consensus 103 mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~ 152 (300)
.-+-.+.++..++..+...+-.+.+....+.++.+.+...+.....+-..
T Consensus 106 ~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkE 155 (205)
T KOG1003|consen 106 AAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKE 155 (205)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 34444556666666666666666666666666666666666666664443
No 180
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=73.00 E-value=1e+02 Score=30.55 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHh
Q 022272 240 LSAFEKMEEKVLT 252 (300)
Q Consensus 240 ~~~feR~eeki~~ 252 (300)
..+||.++.||..
T Consensus 415 p~~leefkrrile 427 (442)
T PF06637_consen 415 PASLEEFKRRILE 427 (442)
T ss_pred hHHHHHHHHHHHh
Confidence 3578888888763
No 181
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.96 E-value=69 Score=28.56 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQA 121 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~a 121 (300)
..+++.|++.+.+|.+.+..
T Consensus 85 r~~~~klk~~~~el~k~~~~ 104 (194)
T PF15619_consen 85 RELERKLKDKDEELLKTKDE 104 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 182
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=72.95 E-value=83 Score=29.46 Aligned_cols=12 Identities=8% Similarity=0.255 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQA 121 (300)
Q Consensus 110 eme~~l~kar~a 121 (300)
.++.++..++..
T Consensus 84 ~a~a~l~~~~~~ 95 (334)
T TIGR00998 84 KAEANLAALVRQ 95 (334)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 183
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=72.75 E-value=69 Score=28.42 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=59.6
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CcHHHHHH
Q 022272 95 SSFEDPEKILEQAVLEMNDDLVKMRQATA------QVLASQKRLENKCKAAEQASEDWYRKAQLALQK----GEEDLARE 164 (300)
Q Consensus 95 d~~EDP~~mLeQ~Ireme~~l~kar~alA------~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~----G~EdLAre 164 (300)
++..||...+...+-.++..+.+.-.... ..|..--.+.-. ++....+. ...=|.. -++|+|+-
T Consensus 4 qK~fDP~qaWKdmy~aTE~~wak~~~q~m~TEEFSa~IG~vLd~yL~---yQKafnE~---MekYLe~lNlPSr~Diarv 77 (189)
T TIGR02132 4 QKVFDPFQAWKDAYDKTESFWGKAIGDNIKREEFSALMGNVLDLNLF---YQKALNDT---TGNYLEQVNVPTKEDIANV 77 (189)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHhCCCCCHHHHHHH
Confidence 35578888888888788777777655432 222221111111 11111111 1111222 34777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 165 ALKRRKSYADNANALKAQLDQQKNVVN-------NLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 165 AL~rk~~~e~~~~~le~ql~~~~~~v~-------~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
| .....+|..+..++.+++..-.... .++..+..++.+|..+..|.+.+.
T Consensus 78 A-~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 78 A-SLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5 5566677777777777665333332 455556666666666665555443
No 184
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=72.68 E-value=95 Score=30.00 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e 147 (300)
+...||.+.+..+..+-.+.+.-+ .+++.++..+.....+|.
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMA-------EqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMA-------EQLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence 445566666665555555554432 233444445555454444
No 185
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=72.65 E-value=16 Score=29.49 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHcCcHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR--------KAQLALQKGEEDLAR 163 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~--------rA~~AL~~G~EdLAr 163 (300)
.-+++.|..+-+++..++..+..++.+-..|..+-..++..+.+.+. ....-+..|.+.||+
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~ 80 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLAR 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHH
Confidence 34889999999999999999999999999999999999999988865 333345667777765
No 186
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.17 E-value=40 Score=25.44 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (300)
..+++.+..|+-.++-++..++.|...+.+...-|..++.+.+.|.-+...
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777888888888888888888888888888888888777777665443
No 187
>PRK02793 phi X174 lysis protein; Provisional
Probab=72.15 E-value=35 Score=25.54 Aligned_cols=48 Identities=8% Similarity=0.029 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 167 ~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
.|..++|.++.=.+..++.+...+.+....|..|+.++..+..++..+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555666666666666666666655555666666666655555544
No 188
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=72.08 E-value=65 Score=27.84 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (300)
...+++..+...-.++-......+.++...+.++......+ ++.++-+++.++...+..+
T Consensus 45 ~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~-------~~~~~a~~~~~~~~~ea~L 104 (155)
T PRK06569 45 NIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEK-------IDSLESEFLIKKKNLEQDL 104 (155)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433333 3334445555555555443
No 189
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=72.03 E-value=37 Score=29.90 Aligned_cols=41 Identities=12% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 108 Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
+.+++..+.+.+..++.+--.+-.+..++..+...+.+.+.
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~ 109 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEK 109 (194)
T ss_dssp -----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccchhhh
Confidence 33444445555555555555555555666655555555444
No 190
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=72.01 E-value=55 Score=27.03 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKN 188 (300)
Q Consensus 176 ~~~le~ql~~~~~ 188 (300)
+..++.++..+..
T Consensus 68 ~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 68 LQELQQEINELKA 80 (132)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 191
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=71.67 E-value=1.5e+02 Score=31.99 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcccCCH
Q 022272 82 LARVVKSYANAILSSFEDP 100 (300)
Q Consensus 82 l~~li~a~~n~~ld~~EDP 100 (300)
...++-|-+.+++-..+|+
T Consensus 338 t~KYLLgELkaLVaeq~Ds 356 (861)
T PF15254_consen 338 TLKYLLGELKALVAEQEDS 356 (861)
T ss_pred HHHHHHHHHHHHHhccchH
Confidence 3445666666666555554
No 192
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=71.22 E-value=2.7 Score=34.21 Aligned_cols=64 Identities=9% Similarity=0.244 Sum_probs=23.4
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (300)
Q Consensus 88 a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~ 151 (300)
.-|++.|+.+.+-...|...+.++...+..+...+...-.....+.+.+..++....+....|.
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~ 84 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAE 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 3466666666666666777777777777777777776666666666666555555555444443
No 193
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=71.16 E-value=1.6e+02 Score=31.91 Aligned_cols=119 Identities=11% Similarity=0.096 Sum_probs=84.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q 022272 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (300)
Q Consensus 96 ~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~-~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (300)
.+++....++..++|+..=+......+-.++.. ...++.++. ..++........-+...-+.-+-.+|....+...
T Consensus 170 ~v~~~~~~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~~~v~---~~L~~~~~~lg~~i~~~l~~~~~~~L~~i~~l~~ 246 (806)
T PF05478_consen 170 GVDDTPNTVNSTLDDLRTFLNDTPQQIDHLLVQNYSELKDHVS---SDLDNIGSLLGGDIQDQLGSNVYPALDSILDLAQ 246 (806)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHhccchhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344456788888888888888888877776665 444444333 2333333334444444445667777888888788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 175 ~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
.+.+.+..+.+.......|+....+|+..+.+.|+........
T Consensus 247 ~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 247 AMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999888888877765
No 194
>PRK04406 hypothetical protein; Provisional
Probab=71.12 E-value=37 Score=25.67 Aligned_cols=46 Identities=4% Similarity=0.050 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
|..++|.++.-.+..++.+...+......|..|+.+++.+..+...
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444444444433
No 195
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=70.98 E-value=21 Score=29.04 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (300)
Q Consensus 103 mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~ 146 (300)
-+++.|..+-+++...+..++.++-+-..|+.+-+.++..+.+.
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38899999999999999999999999999999988888888876
No 196
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=70.81 E-value=78 Score=28.27 Aligned_cols=8 Identities=25% Similarity=0.605 Sum_probs=4.0
Q ss_pred HHHHHHHc
Q 022272 149 KAQLALQK 156 (300)
Q Consensus 149 rA~~AL~~ 156 (300)
+|..+|+.
T Consensus 68 ~Al~~Lkr 75 (191)
T PTZ00446 68 NAKILLKR 75 (191)
T ss_pred HHHHHHHH
Confidence 45555544
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=70.73 E-value=19 Score=33.51 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
++..+++.++..|.+|+.+++++..+|++++.+...+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555544443
No 198
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=70.68 E-value=50 Score=28.06 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~ 158 (300)
.++..+.+....+..-...-+.++........+..+...++..-+..++
T Consensus 45 lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~ 93 (160)
T PF13094_consen 45 LLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDD 93 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccc
Confidence 3334444444444444444445555555555555555555555555544
No 199
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=70.62 E-value=1.2e+02 Score=30.27 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 175 ~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
++..+.++-.++...+.+|+.....|..+-+..+.+-..|.
T Consensus 166 q~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la 206 (499)
T COG4372 166 QAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLA 206 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444333333333333333
No 200
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=70.58 E-value=80 Score=28.34 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQ 124 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~ 124 (300)
+..|+-.+.+++..|.++......
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888999988888887765
No 201
>PRK02119 hypothetical protein; Provisional
Probab=69.98 E-value=41 Score=25.25 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
|..++|..+.-.+..++.+...+.+-...+..|+.++..+..+...+
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555555555555555555555555555555555554444443
No 202
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=69.87 E-value=21 Score=25.50 Aligned_cols=37 Identities=5% Similarity=0.250 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e 206 (300)
..+|+.+..++..+..++.+.+.++..+.+++.-++.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666665555533
No 203
>PRK00736 hypothetical protein; Provisional
Probab=69.85 E-value=42 Score=24.78 Aligned_cols=45 Identities=2% Similarity=0.028 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
...+|.++.-.+..++.+...+.+-...|..|+.++..+..+...
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444443
No 204
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=69.64 E-value=1.2e+02 Score=30.12 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 124 QVLASQKRLENKCKAAEQASEDWYRKAQL 152 (300)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~i~~~e~rA~~ 152 (300)
..-+....+..++..++.++..++.....
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 197 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKNA 197 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666666666666555443
No 205
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=69.51 E-value=70 Score=27.21 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 022272 135 KCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNN--LVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 135 k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~--L~~~l~~Le~ki~e~k~k~~ 212 (300)
+++.+...+++...-.....+-++-++ -++-.|...+..++..+..+-...-+ .-.++.++...+.++..+++
T Consensus 67 e~e~L~~~L~~g~~LV~k~sk~~r~n~-----~kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~ 141 (147)
T PF05659_consen 67 EIERLKELLEKGKELVEKCSKVRRWNL-----YKKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKLD 141 (147)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHH-----HhhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443332 34556778888888877776553322 23466677777777777666
Q ss_pred HH
Q 022272 213 TL 214 (300)
Q Consensus 213 ~L 214 (300)
.+
T Consensus 142 ~i 143 (147)
T PF05659_consen 142 DI 143 (147)
T ss_pred HH
Confidence 44
No 206
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.45 E-value=89 Score=28.35 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHHHHhHH
Q 022272 235 NTSSALSAFEKMEEKVLTME 254 (300)
Q Consensus 235 ~~~~a~~~feR~eeki~~~e 254 (300)
+-+..+..|+.+++-....+
T Consensus 158 DEDEL~~ELdeLeqeeld~~ 177 (221)
T KOG1656|consen 158 DEDELMAELDELEQEELDKE 177 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 34678999999998776555
No 207
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=69.35 E-value=1e+02 Score=28.94 Aligned_cols=14 Identities=21% Similarity=-0.014 Sum_probs=6.7
Q ss_pred ccccCccceeeeec
Q 022272 40 SFFNGGVGALKVTR 53 (300)
Q Consensus 40 ~~~~~~~~~~~~~~ 53 (300)
++|+|-+..+-|.-
T Consensus 21 ~~~~G~V~~i~V~e 34 (327)
T TIGR02971 21 SGGTDRIKKLLVAE 34 (327)
T ss_pred CCCCcEEEEEEccC
Confidence 34445455555443
No 208
>PF13514 AAA_27: AAA domain
Probab=69.31 E-value=2e+02 Score=32.30 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----c--HHHH----------HHHHHHHHHHHHHH
Q 022272 113 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG----E--EDLA----------REALKRRKSYADNA 176 (300)
Q Consensus 113 ~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G----~--EdLA----------reAL~rk~~~e~~~ 176 (300)
.....+...+..+.......+.++..++.....|...=..++..- + .+-+ ...+.+...+..++
T Consensus 673 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri 752 (1111)
T PF13514_consen 673 ARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRI 752 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666677777778888888888887766555332 1 1222 23334444455555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQKNVVNNL 193 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L 193 (300)
..++..++.+...+..|
T Consensus 753 ~~~~~~~~~f~~~~~~L 769 (1111)
T PF13514_consen 753 EQMEADLAAFEEQVAAL 769 (1111)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555444
No 209
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.20 E-value=1.6e+02 Score=31.06 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 124 QVLASQKRLENKCKAAEQASEDWYRKA 150 (300)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~i~~~e~rA 150 (300)
..-.+-..|+..+.+++..+.+++.+-
T Consensus 433 ~l~~e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 433 RLEEENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444433
No 210
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=69.18 E-value=1e+02 Score=28.88 Aligned_cols=14 Identities=21% Similarity=0.012 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 022272 131 RLENKCKAAEQASE 144 (300)
Q Consensus 131 ~le~k~~~~~~~i~ 144 (300)
.++.+++.++.++.
T Consensus 77 ~~~~~l~~a~a~l~ 90 (334)
T TIGR00998 77 NAELALAKAEANLA 90 (334)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 211
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=69.11 E-value=1.9e+02 Score=32.16 Aligned_cols=160 Identities=13% Similarity=0.233 Sum_probs=72.0
Q ss_pred ccccccCCCCcccccCCCccccc-----------CchHHHHHHH-----HHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q 022272 53 RLRIAPSSRSHCYRQGGGALNTR-----------MNLFDRLARV-----VKSYANAILSSFEDPEKILEQAVLEMNDDLV 116 (300)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~-----------Msif~Rl~~l-----i~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~ 116 (300)
+.++++....+|+.-.|--...+ =|=+.=++++ =-+.+-+-++.+.+-+.-++|.|..+...++
T Consensus 630 a~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~q 709 (1200)
T KOG0964|consen 630 ALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQ 709 (1200)
T ss_pred HHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888876655433322 1111111111 1122233333333444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Q 022272 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD---------QQK 187 (300)
Q Consensus 117 kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~---------~~~ 187 (300)
++....-.+..+...+.+.+..+..+....+.-- ..-...| ..+-......+.+...++..+- .-.
T Consensus 710 k~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~----~~k~~~L-e~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~ 784 (1200)
T KOG0964|consen 710 KVENDRNAFKREHEKLKRELNTIKGEKSRVQESL----EPKGKEL-EEIKTSLHKLESQSNYFESELGSELFSQLTPEEL 784 (1200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh----hHHHHHH-HHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHH
Confidence 5555555555555555555555444443333211 1111101 1111222223333333333332 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 188 NVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 188 ~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
+.+..|...|.++..++..+...+-.+..+
T Consensus 785 e~l~kLn~eI~~l~~kl~~~~~er~~~~~r 814 (1200)
T KOG0964|consen 785 ERLSKLNKEINKLSVKLRALREERIDIETR 814 (1200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666766666655555554444
No 212
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=69.07 E-value=1.6e+02 Score=31.08 Aligned_cols=113 Identities=12% Similarity=0.175 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHH
Q 022272 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE--EDLAREALKRRKSYADNA 176 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~--EdLAreAL~rk~~~e~~~ 176 (300)
.-..++.|.++.|.+.+..++...-..+..-..|++.+..++.++.......-- .|- .+.+..+ +...+...+
T Consensus 22 ~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~p---a~pse~E~~Lq~--E~~~L~kEl 96 (617)
T PF15070_consen 22 EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPP---AGPSEVEQQLQA--EAEHLRKEL 96 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccc---ccchHHHHHHHH--HHHHHHHHH
Confidence 335677888888888887777776666666666666666555554433311111 111 1111111 223344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
..+..++..+...-+.|-.-....+.+|.+++.+...+..
T Consensus 97 E~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e 136 (617)
T PF15070_consen 97 ESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQE 136 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544444444444444555666666555555544
No 213
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=68.31 E-value=1.3e+02 Score=29.93 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhHHHH
Q 022272 242 AFEKMEEKVLTMESQ 256 (300)
Q Consensus 242 ~feR~eeki~~~ea~ 256 (300)
.++..+.++...++.
T Consensus 292 ~l~~~~~~l~~~~~~ 306 (457)
T TIGR01000 292 EITDLNQKLLELESK 306 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 214
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=68.27 E-value=99 Score=28.45 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHH
Q 022272 198 RLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQ 256 (300)
Q Consensus 198 ~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~ 256 (300)
..+...|.++..++..+..-.+-|....+-...+...+ ...|+.++.++..+...
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n----~~~l~~~~~k~~~l~~~ 235 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRAN----QKNLEDLEKKKQELSEQ 235 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44566666677777766666666655544443333322 23455555555544443
No 215
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.24 E-value=1.4e+02 Score=30.03 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
|--.-|+..|-+.+.++..++.++.+....-+.++++++.....+..++.
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 33455556666666666666666666666666666666666555554443
No 216
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=68.21 E-value=1.6e+02 Score=30.86 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~r 149 (300)
..-|...|.++..++..+...+.......+++..++.+......+++..
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~ 378 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEE 378 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666665555555555544433
No 217
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.99 E-value=1.7e+02 Score=32.74 Aligned_cols=106 Identities=17% Similarity=0.307 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHcCcHHHHH-------------HH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAA-----------EQASEDWYRKAQLALQKGEEDLAR-------------EA 165 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~-----------~~~i~~~e~rA~~AL~~G~EdLAr-------------eA 165 (300)
.....|.+.+.++..+-..+...+.++... ...+++|+.-=..|...+.++|.. ..
T Consensus 321 ~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~ 400 (1141)
T KOG0018|consen 321 ALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHE 400 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhH
Confidence 333444444444444444444444444333 234555555555555555544442 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 166 L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+.+..++++.+..++.++.........|...+..++.-+.+.+...+.+.
T Consensus 401 ~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~ 450 (1141)
T KOG0018|consen 401 LERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLE 450 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Confidence 34444455555555555544444444444444444444444444444433
No 218
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=67.87 E-value=47 Score=24.56 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq 224 (300)
..|+..++++-....+|+..-..|..++..+..++..|+.+...|+.+
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666667777777777777777777777777776666544
No 219
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=67.84 E-value=1.1e+02 Score=28.81 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~E 159 (300)
++.|...|..+.+++.+.+..+..+-+.+..++.+++....+.+.-+.|-.. |++=+.
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s-Lq~vRP 221 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS-LQSVRP 221 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCh
Confidence 5888899999999999999999999999999999999999998888777654 555444
No 220
>PRK04325 hypothetical protein; Provisional
Probab=67.76 E-value=48 Score=24.88 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
+..+|.++.=.+..++.+...+.+-...|..|+.+++.+..+...
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444433
No 221
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.46 E-value=1.8 Score=45.90 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE-DLAREALKRRKSYADNANALKAQ 182 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~E-dLAreAL~rk~~~e~~~~~le~q 182 (300)
+...++.+++.+.+...........-..++..+..++.+..+|...|..|-.--|| |..|+-..+...++..++.|+.-
T Consensus 244 l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkK 323 (713)
T PF05622_consen 244 LRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKK 323 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655555566666677888888999999999999988666665 88888888888888888888876
Q ss_pred HHH
Q 022272 183 LDQ 185 (300)
Q Consensus 183 l~~ 185 (300)
++.
T Consensus 324 Led 326 (713)
T PF05622_consen 324 LED 326 (713)
T ss_dssp ---
T ss_pred HHH
Confidence 654
No 222
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=67.03 E-value=1.8 Score=46.90 Aligned_cols=138 Identities=17% Similarity=0.319 Sum_probs=0.0
Q ss_pred cCchHHHHHHHHHHHHHHHhcccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 75 RMNLFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (300)
Q Consensus 75 ~Msif~Rl~~li~a~~n~~ld~~EDP---~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~ 151 (300)
..+-+.|....+.+.+.++=..+++- -..|.-.++.++.++..++..+-.-......+++++..+..++..|..+..
T Consensus 230 ~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e 309 (859)
T PF01576_consen 230 QLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYE 309 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33556677777777777777776653 356777888888888888888888888888899999999999999998887
Q ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 152 LALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 152 ~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
.-....-+.| =.-+..+...+..++.+++.....+..|+.....|...+..+...++...+
T Consensus 310 ~e~~~~~Eel----EeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~ 370 (859)
T PF01576_consen 310 EEAEQRTEEL----EEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQA 370 (859)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544433222 123344455666666666666666666666666666666666555554443
No 223
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=66.95 E-value=47 Score=24.21 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
+...+...-.++............|..+|..++.+.+
T Consensus 20 L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 224
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=66.63 E-value=68 Score=29.74 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 174 ~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
.-++-+..|.|.++....+|+..++++...+..++++.+.|++-
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777777777777777776666543
No 225
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=66.62 E-value=1.1e+02 Score=28.48 Aligned_cols=8 Identities=0% Similarity=0.364 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 022272 253 MESQADSL 260 (300)
Q Consensus 253 ~ea~aeA~ 260 (300)
++.+..+|
T Consensus 295 Ld~EIatY 302 (312)
T PF00038_consen 295 LDAEIATY 302 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344444
No 226
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.53 E-value=1.1e+02 Score=28.17 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 166 L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
+.++..+.+.+..+.+.+..++..+.+.+....+.+..+..+..+..-|+-
T Consensus 45 ~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~ 95 (230)
T PF10146_consen 45 LQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKD 95 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555565666666665555555555555555555555544444443
No 227
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=66.17 E-value=1.9 Score=46.70 Aligned_cols=212 Identities=17% Similarity=0.253 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAILSSFED---PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~ED---P~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL 154 (300)
+..|=...+.+-+.++-...+. ..+.+++.+.|+.+.+..+...-..+...++.++.++..++..+++...-+..+.
T Consensus 606 ~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ 685 (859)
T PF01576_consen 606 VSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAE 685 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554444433333 3578888888888888888777777788888888888888877777776666665
Q ss_pred HcCcH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 155 QKGEE----------------DLAREALKRRKSYADNANALKAQLDQQKNVVNN-LVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 155 ~~G~E----------------dLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~-L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
.+.+- +.....-..+..++.++..|+..++.++..... -+..+..|+.+|.++..+++.=.-+
T Consensus 686 ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~ 765 (859)
T PF01576_consen 686 EKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRR 765 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHH
Confidence 55441 111223345666777777777777776664433 3567777888888887777755444
Q ss_pred HHHH-HH----HHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHh-------hccc------CCChHHHHhhhcc--
Q 022272 218 AQSA-KT----ATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSL-------NQLT------TDDLEGKFALLET-- 277 (300)
Q Consensus 218 ~~~A-ka----q~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~aeA~-------~el~------~~~Le~kla~le~-- 277 (300)
...+ +. -.++.+.... .......++++.+-+..+..+...+ .+.. ..-+...|.+.+.
T Consensus 766 ~~~~~k~~rk~er~~kEl~~q--~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~k~Rk~q~elee~~e~~ 843 (859)
T PF01576_consen 766 RAEAQKQLRKLERRVKELQFQ--VEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLAKYRKLQRELEEAEERA 843 (859)
T ss_dssp -------------------------------------------------------------------SSSSHHHHHTCCH
T ss_pred HHHHHHHHHHHHhhHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 22 2223332222 2223334444554444444444433 1110 1223333333332
Q ss_pred CCHHHHHHHHHHHc
Q 022272 278 SSVDDDLANLKKEL 291 (300)
Q Consensus 278 ~~vddeLarLKa~l 291 (300)
..++..|..||.+.
T Consensus 844 ~~~e~~l~~lr~~~ 857 (859)
T PF01576_consen 844 EAAERELNKLRAKS 857 (859)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 24788888888764
No 228
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=65.96 E-value=86 Score=26.88 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=25.6
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (300)
Q Consensus 99 DP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA 150 (300)
.| ..+|+.--....++|..+...-.++.......+.++...+.+..+.-..|
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A 85 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAA 85 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 35666555555556666655544444444444444444444444333333
No 229
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=65.45 E-value=77 Score=26.16 Aligned_cols=18 Identities=11% Similarity=0.398 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 022272 241 SAFEKMEEKVLTMESQAD 258 (300)
Q Consensus 241 ~~feR~eeki~~~ea~ae 258 (300)
..++.++.|+..+..+-.
T Consensus 105 ~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 105 KELSELEQRIEDLNEQNK 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554443
No 230
>PRK00846 hypothetical protein; Provisional
Probab=65.14 E-value=60 Score=24.79 Aligned_cols=47 Identities=6% Similarity=-0.024 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
|...+|..+.=.+..++.+...+......+..|+.+++-+..++..+
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444444444433
No 231
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=65.07 E-value=1.3e+02 Score=28.49 Aligned_cols=174 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCccccccccccccccccCccceeeeeccccccCCCCcccccCCCcccccCc-hHHHHHHHHHHHHHH
Q 022272 14 PMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMN-LFDRLARVVKSYANA 92 (300)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ms-if~Rl~~li~a~~n~ 92 (300)
|-.+...++|+.+|++ -.++||+.|... ...|..... ..|--+..++. |.+--+.++.+.-+.
T Consensus 13 ~~~~~~~~~~~~~ss~-------~~~~~~~~~~~~---~~~r~~~~~------~~~pe~sr~L~~LIk~EK~vi~s~e~~ 76 (271)
T PF13805_consen 13 PTASQIANPPPPPSST-------KSGRFFGKGSLS---HSFRKSTAG------SQQPELSRKLQRLIKAEKSVIRSLESA 76 (271)
T ss_dssp ---------------------------------------------------------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCCC-------CCCcccCCCCcc---hhhhccccc------ccChHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 022272 93 ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSY 172 (300)
Q Consensus 93 ~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~ 172 (300)
..|...-...+-.=...+ .++|..+-.-++-++.+.-.++..+.. ..|-.|..|..+-..
T Consensus 77 are~~~~A~~L~~WG~~e-dddl~DIsDklgvLl~e~ge~e~~~a~-------------------~~d~yR~~LK~IR~~ 136 (271)
T PF13805_consen 77 ARERKAAAKQLSEWGEQE-DDDLSDISDKLGVLLYEIGELEDQYAD-------------------RLDQYRIHLKSIRNR 136 (271)
T ss_dssp HHHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq 224 (300)
|+.+............++.+|+..--+ ..||..+++++..+.+...++.|+
T Consensus 137 E~sl~p~R~~r~~l~d~I~kLk~k~P~-s~kl~~LeqELvraEae~lvaEAq 187 (271)
T PF13805_consen 137 EESLQPSRDRRRKLQDEIAKLKYKDPQ-SPKLVVLEQELVRAEAENLVAEAQ 187 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TT-TTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhhHHHHH
No 232
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=65.02 E-value=66 Score=25.27 Aligned_cols=32 Identities=6% Similarity=0.128 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022272 126 LASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (300)
Q Consensus 126 ~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G 157 (300)
-..++.+..+++.++.+..........+...|
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 33455556666666666666666666666666
No 233
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=64.98 E-value=49 Score=23.75 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 022272 218 AQSAKTATKVS 228 (300)
Q Consensus 218 ~~~Akaq~~v~ 228 (300)
..+++|..++.
T Consensus 38 ~EAaRAN~RlD 48 (56)
T PF04728_consen 38 EEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34445554443
No 234
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=64.93 E-value=1.2e+02 Score=28.38 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=6.2
Q ss_pred HHHHHHHHHH
Q 022272 101 EKILEQAVLE 110 (300)
Q Consensus 101 ~~mLeQ~Ire 110 (300)
..+|.+++..
T Consensus 175 ~evL~~fl~~ 184 (297)
T PF02841_consen 175 EEVLQEFLQS 184 (297)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666555
No 235
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.54 E-value=76 Score=25.77 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 166 L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
...+..++.....|+++.+.....+..|+..|..+...+...+.-+..|..|
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r 87 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESR 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344446666666666666666666666666666666666655544444443
No 236
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=64.05 E-value=94 Score=26.68 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q 022272 80 DRLARVVKSYANAILSSFEDPEKILEQAVLEMNDD 114 (300)
Q Consensus 80 ~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~ 114 (300)
+|=|.+|-..+..+.++..+-..-+...|.++...
T Consensus 74 G~gF~vvA~eir~LA~~t~~~~~~I~~~i~~i~~~ 108 (213)
T PF00015_consen 74 GRGFAVVADEIRKLAEQTSESAKEISEIIEEIQEQ 108 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhh
Confidence 33344444444444444333333333333333333
No 237
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=63.99 E-value=86 Score=26.21 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQ 124 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP---~~mLeQ~Ireme~~l~kar~alA~ 124 (300)
+|+.+..++..+-..+-+.+++. ..-++....+.+..+.+++.....
T Consensus 28 l~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~ 77 (141)
T PRK08476 28 LYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANK 77 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666665544444433332 344555555566666666555333
No 238
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=63.66 E-value=1.1e+02 Score=27.39 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=72.2
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Q 022272 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK 167 (300)
Q Consensus 88 a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~ 167 (300)
+.+...++.+||...-|--.|.++..++.-..++ .-..+.++.+++.+...+..++......+.. ++..=.
T Consensus 25 ~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqa----l~~aK~l~eEledLk~~~~~lEE~~~~L~aq-----~rqlEk 95 (193)
T PF14662_consen 25 AKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQA----LQKAKALEEELEDLKTLAKSLEEENRSLLAQ-----ARQLEK 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 3455566667776666666677777666655433 3345556666667777666666666655443 334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
+...+...+..|+.+-.......+.++..+.+|-.+...++.++
T Consensus 96 E~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 96 EQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 55666666667776666666667777777777766666666666
No 239
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=63.61 E-value=1.1e+02 Score=29.42 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (300)
Q Consensus 162 AreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~ 194 (300)
+.++-..+...+..+...+..++.+...+..|.
T Consensus 70 ~~ei~~~~~~a~~~L~~a~P~L~~A~~al~~l~ 102 (344)
T PF12777_consen 70 AKEIEEIKEEAEEELAEAEPALEEAQEALKSLD 102 (344)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555566667777777777777776666653
No 240
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=63.49 E-value=1.5e+02 Score=28.91 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 022272 159 EDLAREALKRRKSYAD 174 (300)
Q Consensus 159 EdLAreAL~rk~~~e~ 174 (300)
-++|+.-+.|...+.+
T Consensus 136 l~~a~~~~~R~~~L~~ 151 (390)
T PRK15136 136 LAQAQSDLNRRVPLGN 151 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 241
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=63.13 E-value=2.2e+02 Score=30.53 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (300)
Q Consensus 103 mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA 150 (300)
-..|.+.-+.+....+...+.++.+....+...+..++.+..-+....
T Consensus 493 ~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~ 540 (698)
T KOG0978|consen 493 KANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNE 540 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 345666677777777777777776666666666666666655554443
No 242
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=63.02 E-value=1.3e+02 Score=28.10 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=40.7
Q ss_pred ccCCCcccccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 66 RQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLAS 128 (300)
Q Consensus 66 ~~~~~~~~~~Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~ 128 (300)
...||+..+-=+.+..-..-.++.++++-++.+.-..-|.|.+.+++..|.++...|.-+.+.
T Consensus 48 ~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY 110 (258)
T PF15397_consen 48 DIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTY 110 (258)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444333323344444445666667777777777888899999999999988887765544
No 243
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=62.98 E-value=2.4e+02 Score=30.91 Aligned_cols=89 Identities=24% Similarity=0.281 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (300)
Q Consensus 131 ~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k 210 (300)
.+..++......+.+++.+.. ++..-.++|+..--....-.+.....++..++.++..+.........+...++....+
T Consensus 319 ~~~~~l~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~ 397 (908)
T COG0419 319 ELLEKLKSLEERLEKLEEKLE-KLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEE 397 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333334444444444444442 2233333444444444444444444444455555554444334444445555555555
Q ss_pred HHHHHHHHHH
Q 022272 211 KDTLKARAQS 220 (300)
Q Consensus 211 ~~~LkAr~~~ 220 (300)
...+.++...
T Consensus 398 ~~~~~~~~~~ 407 (908)
T COG0419 398 LAELSAALEE 407 (908)
T ss_pred HHHHHHHHHH
Confidence 5555544333
No 244
>PRK01156 chromosome segregation protein; Provisional
Probab=62.91 E-value=2.3e+02 Score=30.75 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
..+...+..+...+......+..+..++..++.++..++.....
T Consensus 684 ~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~ 727 (895)
T PRK01156 684 KKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433
No 245
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=62.79 E-value=82 Score=25.56 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~ 189 (300)
=-+.....++..++.+.......+.++..+.....++..........|-.. .....+..-+..+...+..+...
T Consensus 10 lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~------~~l~~~~~f~~~l~~~i~~q~~~ 83 (141)
T TIGR02473 10 LREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSA------LELSNYQRFIRQLDQRIQQQQQE 83 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888999998889999999999999999888776655666221 12234555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022272 190 VNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
+..++..+......+.+...+..
T Consensus 84 l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 84 LALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655555544443
No 246
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=62.68 E-value=1.6e+02 Score=28.96 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Q 022272 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (300)
Q Consensus 98 EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (300)
+.|..+|+-++-.+++-...+-..++.+-.....+ +...-++++.+|+.| ..|||--| -+++..+
T Consensus 85 ~spl~iL~~mM~qcKnmQe~~~s~LaAaE~khrKl------i~dLE~dRe~haqda-aeGDDlt~--------~LEKERe 149 (561)
T KOG1103|consen 85 ESPLDILDKMMAQCKNMQENAASLLAAAEKKHRKL------IKDLEADREAHAQDA-AEGDDLTA--------HLEKERE 149 (561)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhh-hccchHHH--------HHHHHHH
Confidence 35778888777777666655555554433322222 223334566677765 44554322 2466667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
.|++|++-...++.+.+-.-.+|+.++.+-+.+-+
T Consensus 150 qL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHe 184 (561)
T KOG1103|consen 150 QLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHE 184 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666666666666666666554433
No 247
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=62.54 E-value=1.9e+02 Score=29.70 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLA 127 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A 127 (300)
.+-.|..+...+..+...++.+-.
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELKE 272 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555554443
No 248
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.40 E-value=1.4e+02 Score=30.43 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
|.+-..+.+..+..-+....+.+.+|...--..-.||+++|+|...|--|
T Consensus 342 R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~R 391 (508)
T KOG3091|consen 342 RLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHR 391 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444445555555555555444
No 249
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=62.28 E-value=1.4e+02 Score=30.11 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 84 RVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKA 138 (300)
Q Consensus 84 ~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~ 138 (300)
..-+-.++.+...+|. ..-.+|.+.|+++.|.+++..--.|..++..+++++.+
T Consensus 238 k~akehv~km~kdle~-Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~e 291 (575)
T KOG4403|consen 238 KKAKEHVNKMMKDLEG-LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDE 291 (575)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhh
Confidence 3344556666555553 34568999999999999999888888888888888873
No 250
>PRK11020 hypothetical protein; Provisional
Probab=62.19 E-value=80 Score=25.95 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 182 (300)
Q Consensus 132 le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~q 182 (300)
+..++..+....+....+--.|...||.++-.+...++..++.+++.++..
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888899999888777766666666666665554
No 251
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=61.83 E-value=91 Score=25.79 Aligned_cols=11 Identities=27% Similarity=0.450 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 022272 111 MNDDLVKMRQA 121 (300)
Q Consensus 111 me~~l~kar~a 121 (300)
+...+..+...
T Consensus 31 I~~~l~~A~~~ 41 (147)
T TIGR01144 31 IADGLASAERA 41 (147)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 252
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=61.76 E-value=43 Score=34.01 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
++|++++.++.+++........++..|++++..++.++.+.+.+.+
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3455555555555555555555555666666666666666544333
No 253
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.74 E-value=2.2e+02 Score=30.24 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=63.8
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 022272 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMR-QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR 168 (300)
Q Consensus 90 ~n~~ld~~EDP~~mLeQ~Ireme~~l~kar-~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~r 168 (300)
++.+.|.+=.|..-.++.+.++++.....= .-+..+-..+.++.+.+..+++++..+...--....-|.
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~---------- 92 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE---------- 92 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc----------
Confidence 455556665554444444444444444332 334555566778888888888888888777666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
..++.-..|+.++..+...++.|+.+..+=...+.++..+.+.|
T Consensus 93 --~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l 136 (660)
T KOG4302|consen 93 --ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKL 136 (660)
T ss_pred --cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112225566666555666655555555555555555444433
No 254
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=61.46 E-value=63 Score=23.84 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Q 022272 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (300)
Q Consensus 98 EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (300)
.||+=+.+|+ ++.+.|..+... .....+..-..+....+..+......++..++-+-|+..+.+..-+.+-..
T Consensus 2 ~d~eFLme~m--E~rE~le~~~~~-----~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~ 74 (78)
T PF07743_consen 2 MDPEFLMEQM--ELREELEEAQNS-----DDEAELEELKKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLE 74 (78)
T ss_dssp S-HHHHHHHH--HHHHHHHHHCCC-----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHHHHhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence 3676666543 566666666321 111233344455566666677777777889999999999999877776555
Q ss_pred HHH
Q 022272 178 ALK 180 (300)
Q Consensus 178 ~le 180 (300)
.++
T Consensus 75 ~ik 77 (78)
T PF07743_consen 75 EIK 77 (78)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 255
>PRK11519 tyrosine kinase; Provisional
Probab=61.31 E-value=2.3e+02 Score=30.19 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022272 162 AREALKRRKSYADNANALKA 181 (300)
Q Consensus 162 AreAL~rk~~~e~~~~~le~ 181 (300)
|+..+.....++.++.+++.
T Consensus 306 a~~~l~~~~~l~~ql~~l~~ 325 (719)
T PRK11519 306 AKAVLDSMVNIDAQLNELTF 325 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 256
>PTZ00464 SNF-7-like protein; Provisional
Probab=61.20 E-value=1.3e+02 Score=27.26 Aligned_cols=87 Identities=6% Similarity=0.176 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChHHHHhhhccCCHHHH
Q 022272 204 IQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDD 283 (300)
Q Consensus 204 i~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~aeA~~el~~~~Le~kla~le~~~vdde 283 (300)
|+++...++.......+-.+.+..+.++..++..--.+..+.+-+.+...-...+-+++.=+.++..- ...+..++++|
T Consensus 87 leq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~-~~~DEdELe~E 165 (211)
T PTZ00464 87 MDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVP-DDIDEDEMLGE 165 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CCCCHHHHHHH
Confidence 55666666666666777777777777777766554344444444444444444433332211111000 01122357777
Q ss_pred HHHHHHHc
Q 022272 284 LANLKKEL 291 (300)
Q Consensus 284 LarLKa~l 291 (300)
|+.|-.++
T Consensus 166 Le~Le~e~ 173 (211)
T PTZ00464 166 LDALDFDM 173 (211)
T ss_pred HHHHHHHH
Confidence 77777765
No 257
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=61.18 E-value=1.1e+02 Score=26.51 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (300)
Q Consensus 105 eQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~ 184 (300)
.+..+.+++.|...+..+....+.......+.......+..+..+...-...|.--. +.....+......+...+.
T Consensus 14 ~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~----i~~~~~~~~~r~~l~~~~~ 89 (158)
T PF09486_consen 14 RRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFS----IDEYLALRRYRDVLEERVR 89 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcc----HHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888888888888888888888888888877776666555422 4555666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 185 ~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
..+.+...+...+.....+|..+.+.+..+
T Consensus 90 ~~e~~~a~l~~~l~~~~~~ia~~~raIarn 119 (158)
T PF09486_consen 90 AAEAELAALRQALRAAEDEIAATRRAIARN 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777777666555533
No 258
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=61.13 E-value=1.4e+02 Score=27.57 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=12.0
Q ss_pred HHhhhccC-CHHHHHHHHHHHcC
Q 022272 271 KFALLETS-SVDDDLANLKKELS 292 (300)
Q Consensus 271 kla~le~~-~vddeLarLKa~l~ 292 (300)
+...++++ .+.+.|..|+..+.
T Consensus 177 R~t~~EKnk~lq~QL~~L~~EL~ 199 (246)
T PF00769_consen 177 RVTYAEKNKRLQEQLKELKSELE 199 (246)
T ss_dssp ---HHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344444 47778888887763
No 259
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=61.01 E-value=1.9e+02 Score=29.09 Aligned_cols=49 Identities=10% Similarity=0.197 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhcccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 79 FDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLA 127 (300)
Q Consensus 79 f~Rl~~li~a~~n~~ld~~EDP---~~mLeQ~Ireme~~l~kar~alA~v~A 127 (300)
|+.|..++...-..+.+.+++. ..-++....+.+..+.+++....+++.
T Consensus 23 ~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~ 74 (445)
T PRK13428 23 VPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVE 74 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433333333322 233333344444444444444444433
No 260
>PRK11281 hypothetical protein; Provisional
Probab=60.83 E-value=2.9e+02 Score=31.28 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~ 142 (300)
..|++.+.+.++++.+.+..++..-+.--.++.+.++.+..
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 55888888888888888877777754444444444444433
No 261
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=60.49 E-value=91 Score=25.36 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=53.5
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 022272 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYA 173 (300)
Q Consensus 95 d~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e 173 (300)
+..+|-..+-++.+.++.+.++.-....| .++..+-+.....++..+...|+.||-.|+.+--.=|+.+.-+.-
T Consensus 3 ~~~~~~~~~~d~~~ee~~~~~q~~~e~eA-----~kkA~K~lkKN~rEIkRL~~HAe~al~~~Nk~~Y~YAI~KLR~i~ 76 (109)
T PHA02571 3 DESTDVEELTDEEVEELLSELQARNEAEA-----EKKAAKILKKNRREIKRLKKHAEEALFDNNKEQYVYAIKKLRDIY 76 (109)
T ss_pred chhcchhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34445455556667777777766666655 355667788889999999999999999999887777766555443
No 262
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=60.43 E-value=1.9e+02 Score=28.86 Aligned_cols=32 Identities=31% Similarity=0.249 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 194 VSNTRLLESKIQEARSKKDTLKARAQSAKTAT 225 (300)
Q Consensus 194 ~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~ 225 (300)
..++.+|+.+++..+.-.++|..|.+....+.
T Consensus 372 ~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 372 QVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666666667777766665554
No 263
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.30 E-value=1e+02 Score=25.76 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki~e 206 (300)
..+...+++....++.+...+..|+.||.+
T Consensus 92 ~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 92 TEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 264
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=60.13 E-value=1.7e+02 Score=28.28 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q 022272 100 PEKILEQAVLEMNDDLVKMRQATAQV----LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (300)
Q Consensus 100 P~~mLeQ~Ireme~~l~kar~alA~v----~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (300)
-...|...|.|....+.+++.-++.. +......+.++..+...|.+.-.+|...=..|+-+-|..++.+...+..
T Consensus 84 ~~~~l~~~v~d~~rri~~~kerL~e~~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~ 162 (319)
T KOG0796|consen 84 ALEILERFVADVDRRIEKAKERLAETVEERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKA 162 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 34666777777777766666666655 2222333678999999999999999999999999999888766555443
No 265
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=60.09 E-value=1.6e+02 Score=28.14 Aligned_cols=71 Identities=7% Similarity=0.163 Sum_probs=41.6
Q ss_pred CchHHHHHH------HHHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 76 MNLFDRLAR------VVKSYANAILSSFEDP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (300)
Q Consensus 76 Msif~Rl~~------li~a~~n~~ld~~EDP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~ 146 (300)
+.+|.+... -|-.+++.+.+++.+= ..-|.-.|.++++.|...+..+......-..++..+..+...+.++
T Consensus 37 Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~ 114 (301)
T PF06120_consen 37 YYFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEK 114 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445554443 2444555555555431 3445556667777777777777777777777777776665554444
No 266
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=59.68 E-value=92 Score=26.43 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 163 reAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
-.++.++..++.++.....+++.++..+.+....+..-...|++++...
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~ 71 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNA 71 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666654444444444444444444444444444443333
No 267
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=59.50 E-value=2.3e+02 Score=29.76 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHH
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ--SAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTME 254 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~--~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~e 254 (300)
..|+.+......++..++..+..|+..+.....++..++..+. ++--... .+-++..|++...+|...+
T Consensus 185 ~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~ae---------v~lim~eLe~aq~ri~~lE 255 (629)
T KOG0963|consen 185 AGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAE---------VSLIMTELEDAQQRIVFLE 255 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555666666666666666666665555421 1111111 2335566777777777766
Q ss_pred HHHHHh
Q 022272 255 SQADSL 260 (300)
Q Consensus 255 a~aeA~ 260 (300)
.+.+-+
T Consensus 256 ~e~e~L 261 (629)
T KOG0963|consen 256 REVEQL 261 (629)
T ss_pred HHHHHH
Confidence 666543
No 268
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=59.43 E-value=93 Score=25.10 Aligned_cols=8 Identities=13% Similarity=-0.026 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 022272 132 LENKCKAA 139 (300)
Q Consensus 132 le~k~~~~ 139 (300)
+...+.++
T Consensus 25 l~~~i~e~ 32 (126)
T TIGR00293 25 LRALIAEL 32 (126)
T ss_pred HHHHHHHH
Confidence 33333333
No 269
>PLN02769 Probable galacturonosyltransferase
Probab=59.25 E-value=69 Score=33.70 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Q 022272 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (300)
Q Consensus 98 EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (300)
|.-+.|-|-.++.|+++|..||.-++. +|..+.-.+-..++...|.+.+.-.-.| ..+.||=..+..+....+..+.
T Consensus 173 e~~~~~~d~~~~~l~Dql~~Ak~y~~~-iak~~~~~~l~~el~~~i~e~~~~l~~~--~~d~dlp~~~~~~~~~m~~~~~ 249 (629)
T PLN02769 173 EHKEVMKDSIVKRLKDQLFVARAYYPS-IAKLPGQEKLTRELKQNIQEHERVLSES--ITDADLPPFIQKKLEKMEQTIA 249 (629)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHh-hcccCCcHHHHHHHHHHHHHHHHHHhhc--cccccCChhHHHHHHHHHHHHH
Confidence 444667788899999999999986543 2223333444555666666666554443 4477888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
..+.....-...+.+|+.-+..+|.+..-.+.+-.-
T Consensus 250 ~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~ 285 (629)
T PLN02769 250 RAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAF 285 (629)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666677788888888777776654444333
No 270
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=58.95 E-value=2.6e+02 Score=30.07 Aligned_cols=137 Identities=14% Similarity=0.218 Sum_probs=77.7
Q ss_pred hHHHHHHHHH------HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVK------SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (300)
Q Consensus 78 if~Rl~~li~------a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~ 151 (300)
|.++|..-++ ...++.|..++.-..-|++.+++-++--...+..+-...+..++-+..|...+..+++++.++.
T Consensus 475 iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~ 554 (961)
T KOG4673|consen 475 IIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQAL 554 (961)
T ss_pred HHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5555544333 2334455555555666777777777766677777888888888888899999999999998876
Q ss_pred HHHHcCcH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 152 LALQKGEE----DLAR-------EALKRRKSYADNANALKAQLDQQK----NVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 152 ~AL~~G~E----dLAr-------eAL~rk~~~e~~~~~le~ql~~~~----~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
. ++...+ ||-+ +|=++...|-.++..|...+...+ ...+.++..+.+|..+++..+++-+.|.
T Consensus 555 a-~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 555 A-EQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred H-HHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 333222 2311 222233333344444443333222 2234455555555555555555544443
No 271
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=58.76 E-value=1.2e+02 Score=26.13 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 022272 108 VLEMNDDLVKMRQATA 123 (300)
Q Consensus 108 Ireme~~l~kar~alA 123 (300)
+.+++..+.+++....
T Consensus 72 ~~e~e~~L~~a~~ea~ 87 (175)
T PRK14472 72 LRKNRELLAKADAEAD 87 (175)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333443333333
No 272
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.47 E-value=48 Score=22.56 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e 206 (300)
|.....|+..++.+...-+.|......|...+..
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333333333333
No 273
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=58.34 E-value=3.3e+02 Score=31.10 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=5.2
Q ss_pred CCCCCCCCC
Q 022272 12 TMPMTPAPS 20 (300)
Q Consensus 12 ~~~~~~~~~ 20 (300)
.||.-|..|
T Consensus 353 ~pP~vPevs 361 (1317)
T KOG0612|consen 353 VPPVVPEVS 361 (1317)
T ss_pred CCCCCCcCC
Confidence 366666664
No 274
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=58.11 E-value=1.8e+02 Score=28.07 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-EDLAREALKRRKSYADNANALK 180 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~-EdLAreAL~rk~~~e~~~~~le 180 (300)
.-|-|.+.+.++.-......+.. +.+++.+++..+.-+..+...- +.|+ .--++.... .-+.+=
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~-------Lrqkl~E~qGD~KlLR~~la~~-r~~~~~~~~~~~~~-------ere~lV 132 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEE-------LRQKLNEAQGDIKLLREKLARQ-RVGDEGIGARHFPH-------EREDLV 132 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhchHHHHHHHHHhh-hhhhccccccccch-------HHHHHH
Confidence 44556666666666655555444 3344444444444333322221 1111 112333333 333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CcHHHHHHHHHHHHHhHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT-----SSALSAFEKMEEKVLTMES 255 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~-----~~a~~~feR~eeki~~~ea 255 (300)
.+++....+..+|..+++.+-...+++..+++.++-... +-...+|..++|-.. +.....=--+.+++...+.
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~--RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qe 210 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH--RLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQE 210 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777888888888888888888888875443 346677888877432 2222222234566666665
Q ss_pred HHHH
Q 022272 256 QADS 259 (300)
Q Consensus 256 ~aeA 259 (300)
+.+.
T Consensus 211 E~~l 214 (319)
T PF09789_consen 211 EKEL 214 (319)
T ss_pred HHHH
Confidence 5543
No 275
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=58.01 E-value=2.2e+02 Score=29.01 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=14.0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQ 124 (300)
Q Consensus 95 d~~EDP~~mLeQ~Ireme~~l~kar~alA~ 124 (300)
+.+++....+...+.+++..+...+..+..
T Consensus 105 ~sl~~e~a~lk~~l~e~~~El~~l~~~l~~ 134 (511)
T PF09787_consen 105 DSLSSELAVLKIRLQELDQELRRLRRQLEE 134 (511)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444544444444444444444444
No 276
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=57.81 E-value=1.2e+02 Score=25.78 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=34.7
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (300)
Q Consensus 99 DP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL 154 (300)
.| ..+|+.-=..+.+.+..+...-..+.......+.++...+.++.+.-+.|+..-
T Consensus 31 kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a 87 (164)
T PRK14473 31 RPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERA 87 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 366666666666667777766666666666666666666666666555555443
No 277
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=57.70 E-value=2.8e+02 Score=30.03 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 105 eQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
+..|.++++...++......+......+++...+++.+.+++++
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444433333333333333333333333344433333333
No 278
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=57.45 E-value=1.4e+02 Score=28.89 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHH
Q 022272 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFE 244 (300)
Q Consensus 165 AL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~fe 244 (300)
+.++..+++++.+++++.........+++......--+.|..-+.+...++...+..+.. ......+.++
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~----------~~~e~~~~i~ 71 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS----------LSAEERELIE 71 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CChhHHHHHH
Confidence 344555555666666666555555555555555555555555555555554444333221 1223445666
Q ss_pred HHHHHHHhHHH
Q 022272 245 KMEEKVLTMES 255 (300)
Q Consensus 245 R~eeki~~~ea 255 (300)
.+++.+.+...
T Consensus 72 ~L~~~Ik~r~~ 82 (330)
T PF07851_consen 72 KLEEDIKERRC 82 (330)
T ss_pred HHHHHHHHHHh
Confidence 66666655554
No 279
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=57.37 E-value=1.2e+02 Score=25.92 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (300)
Q Consensus 112 e~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~ 191 (300)
+....++...+..++......+.++..+...-.+|..+...=+..|= ...+...++..+..|+..++++...+.
T Consensus 15 ~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~------s~~q~~nyq~fI~~Le~~I~q~~~~~~ 88 (148)
T COG2882 15 KKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGV------SAAQWQNYQQFISQLEVAIDQQQSQLS 88 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777788888888888888888887776666663 344557788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022272 192 NLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 192 ~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
.+...+.+....+.+.+.++..+
T Consensus 89 ~~~~~ve~~r~~w~ek~~~~k~~ 111 (148)
T COG2882 89 KLRKQVEQKREIWQEKQIELKAL 111 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777776666665543
No 280
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=57.33 E-value=1.5e+02 Score=26.81 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (300)
Q Consensus 165 AL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq 224 (300)
+.......+.....+-..++..+..+..++.+-..|+..++++..+....-.|+++-++.
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~h 140 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAH 140 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456677777788888888888888888888888888888888888888777776554
No 281
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=57.30 E-value=4e+02 Score=31.78 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH----HHHHHHHHHHHHHH-------HHH
Q 022272 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE----DLAREALKRRKSYA-------DNA 176 (300)
Q Consensus 108 Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~E----dLAreAL~rk~~~e-------~~~ 176 (300)
|+.++..+.-.+..+.+.-+.-......+.-++....+|..|...-+.+-.+ |+ +.....+..++ +.+
T Consensus 1252 i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~-~kL~~ei~~Lk~el~~ke~~~ 1330 (1822)
T KOG4674|consen 1252 IEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDY-EKLKSEISRLKEELEEKENLI 1330 (1822)
T ss_pred HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555566667788888999998887777221 11 11111222333 333
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQK----NVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (300)
Q Consensus 177 ~~le~ql~~~~----~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq 224 (300)
+.+...+...+ .+++.+...+..+..++.+++.....|.+.+.-..++
T Consensus 1331 ~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1331 AELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 4444455555555666666666666665555544444
No 282
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=57.30 E-value=1.3e+02 Score=25.95 Aligned_cols=54 Identities=17% Similarity=0.088 Sum_probs=30.0
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Q 022272 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (300)
Q Consensus 99 DP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~E 159 (300)
.| ..+|+.-=..+.+.+..+.....++ +..+.+++..+.++...|..-+...+.
T Consensus 42 kpI~~~l~~R~~~I~~~l~~A~~~~~ea-------~~~~~~~~~~L~~a~~ea~~ii~~a~~ 96 (174)
T PRK07352 42 GFLGKILEERREAILQALKEAEERLRQA-------AQALAEAQQKLAQAQQEAERIRADAKA 96 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 3666666666666666666554444 445555555555555555555544443
No 283
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=57.23 E-value=1.5e+02 Score=26.87 Aligned_cols=16 Identities=50% Similarity=0.708 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHcCCC
Q 022272 279 SVDDDLANLKKELSGS 294 (300)
Q Consensus 279 ~vddeLarLKa~l~~~ 294 (300)
.++..|+.+...+.+.
T Consensus 194 ~~~~~l~e~e~~~s~t 209 (212)
T COG3599 194 YVDTKLAELETRLSGT 209 (212)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4677777777766543
No 284
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=57.10 E-value=82 Score=26.91 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (300)
++++-++.|+..++.+...+.+|...+.+|..++.++.++...+..+..
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777777777777777666665554443
No 285
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.74 E-value=1.7e+02 Score=29.86 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 119 RQATAQVLASQKRLENKCKAAEQASED 145 (300)
Q Consensus 119 r~alA~v~A~~k~le~k~~~~~~~i~~ 145 (300)
+..++.+++.-+.++.++..+..+-+.
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~ 84 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEA 84 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444433
No 286
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=56.67 E-value=2.4e+02 Score=29.08 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAr 163 (300)
+.++++.|.-++-+++-++..+..+-+.++.+++++-.+-.-.+ -++.|+..|.-+||.
T Consensus 599 i~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQ----gakKAVhdaK~ElA~ 657 (790)
T PF07794_consen 599 IGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQ----GAKKAVHDAKVELAA 657 (790)
T ss_pred hhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHH
Confidence 35677788877777777777776666555555555555444333 234577777777774
No 287
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=56.49 E-value=63 Score=30.01 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
.++..++..++.++.++.-+++++..++.+++.+-.++...++.+.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888888888888888877654
No 288
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=56.38 E-value=1.5e+02 Score=26.67 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQAT 122 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~al 122 (300)
..+-|.+.+.++.-.+..+..
T Consensus 28 ~~a~~KL~Eaeq~~dE~er~~ 48 (205)
T KOG1003|consen 28 ATALQKLEEAEQAADESERGM 48 (205)
T ss_pred HHHHHHHHHHhhcccHHHHHH
Confidence 444444445544444444433
No 289
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=56.25 E-value=65 Score=25.85 Aligned_cols=106 Identities=18% Similarity=0.305 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP~---~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL 154 (300)
+|+.+.+++..+-+.+-+.+++.+ .-.++...+.+..+.+++.....++...+.--.+..+. .+.+.+..+..-+
T Consensus 20 ~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~--~~~ea~~~~~~~~ 97 (132)
T PF00430_consen 20 LYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEE--ILAEAEKEAERII 97 (132)
T ss_dssp THHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (300)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~le~ql~~ 185 (300)
..+..++..+.-.-+..+..++..+-..+..
T Consensus 98 ~~a~~~i~~e~~~a~~~l~~~~~~la~~~a~ 128 (132)
T PF00430_consen 98 EQAEAEIEQEKEKAKKELRQEIVDLAVDIAE 128 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 290
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=56.13 E-value=1.2e+02 Score=25.51 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=27.3
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (300)
Q Consensus 99 DP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~ 151 (300)
.| ..+|+.-=..+...+..+.....++.......+.++...+.++...-..|+
T Consensus 28 kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~ 81 (159)
T PRK13461 28 DKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYK 81 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 355655555555555555555555544444455555555544444444443
No 291
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=55.81 E-value=1.3e+02 Score=25.64 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=45.6
Q ss_pred chHHHHHH---HHHHHHHHHhcccC----CHH-H---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 77 NLFDRLAR---VVKSYANAILSSFE----DPE-K---ILEQAVLEMNDDL-VKMRQATAQVLASQKRLENKCKAAEQASE 144 (300)
Q Consensus 77 sif~Rl~~---li~a~~n~~ld~~E----DP~-~---mLeQ~Ireme~~l-~kar~alA~v~A~~k~le~k~~~~~~~i~ 144 (300)
.|++||++ +|+|-|+-+++.+| |-+ . -+...|.++.+.+ .+........ -..+..++..+...+.
T Consensus 7 ~I~sRLfDHrpvIqgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~---L~~l~~~l~~a~~~~~ 83 (145)
T PF14942_consen 7 EIHSRLFDHRPVIQGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQN---LEQLLERLQAANSMCS 83 (145)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 47888875 89999999999999 333 2 2223444444333 3333332222 2335566677777777
Q ss_pred HHHHHHHHHHH
Q 022272 145 DWYRKAQLALQ 155 (300)
Q Consensus 145 ~~e~rA~~AL~ 155 (300)
.+..+....-.
T Consensus 84 ~l~~~e~~~~~ 94 (145)
T PF14942_consen 84 RLQQKEQEKQK 94 (145)
T ss_pred HHHHHHHHHhh
Confidence 77666666544
No 292
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=55.50 E-value=1.9e+02 Score=27.54 Aligned_cols=67 Identities=24% Similarity=0.320 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNT-------RLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKV 250 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l-------~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki 250 (300)
++..+++.++.++.+.+.-+ ++|.-=.+|+.++-+++-.....+.-...+= ..-..+|.|+|+|
T Consensus 216 DI~EEldRL~sHv~~~~~iL~~~g~vGRkLDFl~QE~nREaNTl~SKS~~~~it~~~v---------ElK~~IEqmREQV 286 (290)
T COG1561 216 DIAEELDRLKSHVKEFRNILEKGGPVGRKLDFLMQEFNREANTLGSKSNAAEITAAVV---------ELKVLIEQMREQV 286 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhHHHHhhhhccchHHHHHHHH---------HHHHHHHHHHHHH
Confidence 33444444444444444444 5677777888888888876655554332221 2234788888888
Q ss_pred HhH
Q 022272 251 LTM 253 (300)
Q Consensus 251 ~~~ 253 (300)
.-.
T Consensus 287 QNi 289 (290)
T COG1561 287 QNI 289 (290)
T ss_pred hcC
Confidence 643
No 293
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=55.48 E-value=1.5e+02 Score=26.23 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=52.6
Q ss_pred CchHHHHHHHHHHHHHHHhcccC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 76 MNLFDRLARVVKSYANAILSSFE--DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (300)
Q Consensus 76 Msif~Rl~~li~a~~n~~ld~~E--DP~-~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e 147 (300)
.|+|+.+...+... .-++. ||. .-..+++..++..|..+...+..++...+.+-.-+.++-.....|.
T Consensus 2 ~~~~~~~~~s~~~~----~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la 72 (236)
T PF09325_consen 2 KGLFGKLFDSVSNS----SPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLA 72 (236)
T ss_pred hhHHHHHHHHHHcc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36777777766665 44444 553 6778999999999999999999999888888888888777777665
No 294
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=55.43 E-value=2e+02 Score=27.62 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (300)
Q Consensus 111 me~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v 190 (300)
+.++|.-+|..+..+......-+.+|-+-..-+.+--+..+.+++-+.|.|.+-+ -.|-.++..|.+.-..+....
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi----~qy~~QLn~L~aENt~L~SkL 79 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTI----FQYNGQLNVLKAENTMLNSKL 79 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHhhhHHHHHHHHHHHhHHH
Confidence 4567788888888888777777888877777777777778888888888887765 456667777777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 191 NNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 191 ~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
+.=+.+-..|++.|+.++.++....-.
T Consensus 80 e~EKq~kerLEtEiES~rsRLaaAi~d 106 (305)
T PF14915_consen 80 EKEKQNKERLETEIESYRSRLAAAIQD 106 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666667777777776666654433
No 295
>PF14282 FlxA: FlxA-like protein
Probab=55.42 E-value=1.1e+02 Score=24.52 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQ 185 (300)
Q Consensus 172 ~e~~~~~le~ql~~ 185 (300)
+.+++..|+.++..
T Consensus 24 L~~Qi~~Lq~ql~~ 37 (106)
T PF14282_consen 24 LQKQIKQLQEQLQE 37 (106)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334333333
No 296
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=55.29 E-value=2.8e+02 Score=29.29 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 022272 132 LENKCKAAEQASEDWY 147 (300)
Q Consensus 132 le~k~~~~~~~i~~~e 147 (300)
++.++..+..+++.|.
T Consensus 85 Lq~E~~~L~kElE~L~ 100 (617)
T PF15070_consen 85 LQAEAEHLRKELESLE 100 (617)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 297
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=55.03 E-value=1.6e+02 Score=26.36 Aligned_cols=54 Identities=9% Similarity=0.173 Sum_probs=31.5
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (300)
Q Consensus 99 DP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~ 152 (300)
+| ..+|++--....+.+..+.....++.......+.++...+.++.+.-+.|+.
T Consensus 71 kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~ 125 (205)
T PRK06231 71 KPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANY 125 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 3666666666666666666666655555555555555555555555444443
No 298
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=54.79 E-value=3.5e+02 Score=30.33 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~r 149 (300)
+=|.-.+++|++.|.+..+.++..--..|.+..+.+.+..++...+.-
T Consensus 411 KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s 458 (1195)
T KOG4643|consen 411 KNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRS 458 (1195)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457778888899999999988888888888888888877776655443
No 299
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=54.63 E-value=89 Score=23.40 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
..+++.|...-+.+......+...|.+|..++.+.......+..
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~ 54 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKK 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555554444444443
No 300
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=54.41 E-value=2.4e+02 Score=28.24 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 022272 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (300)
Q Consensus 79 f~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~ 158 (300)
|.=+-.++.+..+-+-.++-+=+...-..+.|+...+..-. +-.-..+.+.+.++.+.+.+..+-... |-..+
T Consensus 178 FrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~n------L~~lr~~k~~Lt~l~~rvqkvRDeLe~-LLddd 250 (414)
T KOG2662|consen 178 FRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLN------LERLRILKKRLTELTSRVQKVRDELEE-LLDDD 250 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHH-HhcCh
Confidence 33344444444443333333333333333444444433333 222334445555555556655555555 45578
Q ss_pred HHHHHHHHHHHH--------------------HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 159 EDLAREALKRRK--------------------SY-----------ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 159 EdLAreAL~rk~--------------------~~-----------e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
||+|.-.|.+|. .. ++.++++|-.++..=.+++.+..++..|..-|.+.
T Consensus 251 ~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddT 330 (414)
T KOG2662|consen 251 DDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDT 330 (414)
T ss_pred HHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 899999999992 23 57778888888877777777777777777777766
Q ss_pred HHHHH
Q 022272 208 RSKKD 212 (300)
Q Consensus 208 k~k~~ 212 (300)
+.=..
T Consensus 331 Ed~In 335 (414)
T KOG2662|consen 331 EDIIN 335 (414)
T ss_pred HHHHH
Confidence 55444
No 301
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=54.32 E-value=2e+02 Score=27.34 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHHHHHHHHH
Q 022272 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL------ALQKGEEDLAREALKRRKSYADNANAL 179 (300)
Q Consensus 106 Q~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~------AL~~G~EdLAreAL~rk~~~e~~~~~l 179 (300)
|-|.+++.++.+++.. +++-+-+++.+++...+-..++.. +|+.-+..|...+ ..++.....+
T Consensus 18 qKIqelE~QldkLkKE-------~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c----~~lek~rqKl 86 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKE-------RQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESC----ENLEKTRQKL 86 (307)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH----HHHHHHHHHh
Confidence 5678888888887765 333334445555444444443332 2333333332222 2333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (300)
Q Consensus 180 e~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~ 218 (300)
...+..-+.+|.-|..++...+..|+.+..+...++...
T Consensus 87 shdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsEL 125 (307)
T PF10481_consen 87 SHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSEL 125 (307)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444443
No 302
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=54.24 E-value=1.6e+02 Score=26.33 Aligned_cols=104 Identities=20% Similarity=0.273 Sum_probs=74.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Q 022272 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (300)
Q Consensus 97 ~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (300)
.++|...|+..|.-.+....++...++.+-...++.-.+++.-... ++.. ..+|||--. -++...
T Consensus 79 ~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrk------h~~~-~aqgDD~t~--------lLEkER 143 (192)
T PF09727_consen 79 YENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRK------HAED-MAQGDDFTN--------LLEKER 143 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-HHccchHHH--------HHHHHH
Confidence 6689999999999999999999999888877777765555543322 2222 456666221 236677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+.|+.+++.-+.+...++....++..++.+-+.+...+.
T Consensus 144 eRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~ 182 (192)
T PF09727_consen 144 ERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFV 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888888777777666655543
No 303
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.07 E-value=2.5e+02 Score=28.32 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~E 159 (300)
..+|-++.++...+.......-.-...-++++..+.++...+-+...+=..++..+++
T Consensus 148 ~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~ 205 (446)
T KOG4438|consen 148 KQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNK 205 (446)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556665555555566666777777777777776766666666666654
No 304
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.87 E-value=92 Score=26.63 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=12.7
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHhh
Q 022272 237 SSALSAFEKMEEKVLTMESQADSLN 261 (300)
Q Consensus 237 ~~a~~~feR~eeki~~~ea~aeA~~ 261 (300)
......++.++..+..++.+.+.+.
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555443
No 305
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=53.72 E-value=1.4e+02 Score=25.30 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHhcccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVL 126 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP---~~mLeQ~Ireme~~l~kar~alA~v~ 126 (300)
+|+.+..++..+-..+.+.+++. ..-.+....+++..+.+++.....++
T Consensus 43 l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii 94 (156)
T CHL00118 43 LYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEI 94 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444444433332 23344444555555555555444433
No 306
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=53.66 E-value=2.7e+02 Score=28.59 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 174 DNANALKAQLDQQKNVVNNLVSNT---RLLESKIQEARSKKDTLKARAQSAKT 223 (300)
Q Consensus 174 ~~~~~le~ql~~~~~~v~~L~~~l---~~Le~ki~e~k~k~~~LkAr~~~Aka 223 (300)
.....++..+.+....+..|+..+ ..|+.++.........|+........
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777766 56677777777777777777666655
No 307
>PF14282 FlxA: FlxA-like protein
Probab=53.15 E-value=1.1e+02 Score=24.47 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNL 193 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L 193 (300)
+..|+.++..+...+..|
T Consensus 21 I~~L~~Qi~~Lq~ql~~l 38 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQEL 38 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 308
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=52.88 E-value=1.9e+02 Score=26.72 Aligned_cols=102 Identities=22% Similarity=0.308 Sum_probs=63.7
Q ss_pred CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Q 022272 98 EDP--EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (300)
Q Consensus 98 EDP--~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 175 (300)
-|| ..||++++.. +.++.......-....+..+.+..++..+..++.+-..++.+-+. |-+.
T Consensus 115 ~D~~wqEmLn~A~~k----VneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrP------------Yfe~ 178 (239)
T PF05276_consen 115 FDPAWQEMLNHATQK----VNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRP------------YFEL 178 (239)
T ss_pred ccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHH
Confidence 477 4777766654 444555556666667777788888888888888887777776443 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
-..+..++..++..|..|+..|...+..+...-+.++.+-
T Consensus 179 K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~IS 218 (239)
T PF05276_consen 179 KAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQIS 218 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666666666666666666655555555443
No 309
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.33 E-value=72 Score=21.69 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 179 le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
++..++.++..-+.|+.+...|...-+.++.+...|+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555554443
No 310
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=52.28 E-value=69 Score=24.95 Aligned_cols=46 Identities=28% Similarity=0.369 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCC
Q 022272 189 VVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT-ATKVSEMLGNV 234 (300)
Q Consensus 189 ~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Aka-q~~v~~~~~~~ 234 (300)
.+++|..++..|..++.++......+++....|+. ..+.|+.+.++
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34444444444555555555544444444444322 22344444443
No 311
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=51.87 E-value=1.3e+02 Score=24.55 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
++.|-.+...++...+..+...+..+.+....-+. ..|.+-+.||.+.+.++
T Consensus 61 d~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 61 DEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAKAEL 112 (115)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHH
Confidence 34555555555555566666666666555554333 44444444444444443
No 312
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=51.82 E-value=63 Score=31.62 Aligned_cols=41 Identities=15% Similarity=0.357 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 167 ~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
.+...+++.+..++..+......+..+...+..++.++.++
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554444444444444443
No 313
>PRK14127 cell division protein GpsB; Provisional
Probab=51.82 E-value=47 Score=27.01 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
.+-..++.+...+..|+..+..|+.++.+++.+..
T Consensus 34 ~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 34 DVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444555555555555555555555555444
No 314
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=51.78 E-value=1.5e+02 Score=25.15 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=27.7
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (300)
Q Consensus 99 DP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~ 151 (300)
.| ..+|+.-=....+++..+...-.++.......+.++...+.+..+.-..|+
T Consensus 31 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~ 84 (164)
T PRK14471 31 KPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAR 84 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 366666555666666666665555444444444455444444444444333
No 315
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=51.67 E-value=2.3e+02 Score=28.15 Aligned_cols=11 Identities=0% Similarity=0.142 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 022272 135 KCKAAEQASED 145 (300)
Q Consensus 135 k~~~~~~~i~~ 145 (300)
+++.++.+...
T Consensus 45 ~~~~l~~erN~ 55 (418)
T TIGR00414 45 EIEELQAKRNE 55 (418)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 316
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=51.58 E-value=1.6e+02 Score=28.29 Aligned_cols=51 Identities=10% Similarity=0.276 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~ 218 (300)
++..++.++...+..++....-+..|......=...+..++.+...+....
T Consensus 264 e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 264 EKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHH
Confidence 344445555555555555555555555555555555555555555554443
No 317
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=51.49 E-value=1.4e+02 Score=24.84 Aligned_cols=95 Identities=9% Similarity=0.213 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 022272 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (300)
Q Consensus 79 f~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~ 158 (300)
|+-|.-+.+-++++++.. +-..+...-+.|..+|+.+ .++++.+..++++-.+-
T Consensus 30 ~sD~M~vTrr~m~~A~~~-------v~kql~~vs~~l~~tKkhL----------sqRId~vd~klDe~~ei--------- 83 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVAS-------VSKQLEQVSESLSSTKKHL----------SQRIDRVDDKLDEQKEI--------- 83 (126)
T ss_pred hhHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHH---------
Confidence 444444555554444333 3444444444555444443 34555555554443221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (300)
Q Consensus 159 EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ 202 (300)
....-.+.......+..+...++.....+..|+..+..++.
T Consensus 84 ---~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 84 ---SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred ---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11222222334555566666666666666666666665553
No 318
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=51.35 E-value=3.5e+02 Score=29.36 Aligned_cols=106 Identities=14% Similarity=0.183 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN 188 (300)
Q Consensus 109 reme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~ 188 (300)
.||..-|..++.++...-.....+...++++...++.........-. -.-.+-.++..+...+..+...++....
T Consensus 318 ~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~-----~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 318 SDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQA-----QIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333322222110 0112223334444555555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 189 VVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (300)
Q Consensus 189 ~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (300)
.+..|...|..|+..+.+-..+...++.|..
T Consensus 393 ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 393 KINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666555555555555555544
No 319
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=51.11 E-value=1.4e+02 Score=26.05 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~ 218 (300)
.++.++..+...++.|+..+..|+.++..++....+|..=.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444333
No 320
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=51.00 E-value=2.2e+02 Score=26.97 Aligned_cols=141 Identities=20% Similarity=0.238 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-----------------HHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-----------------EDLARE 164 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~-----------------EdLAre 164 (300)
..+.+.+.++=+.+.++|..=...+ +.-+..+++.++..+.+.+..+-..+..-+ +-|+.+
T Consensus 131 ~~l~~al~~AL~~l~~mR~~EG~~L--~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el~~~~id~~Rl~qE 208 (291)
T TIGR00255 131 ALILGALEEALLDFINMREFEGENL--KSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDLAQEFLDLNRLEQE 208 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5677777777777888877655444 234444454444444444443333333222 234433
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHH
Q 022272 165 A--LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSA 242 (300)
Q Consensus 165 A--L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~ 242 (300)
+ +..|.+..+.+..|...++++...+..=..-=++|.-=++|+.++.+++-+..+.+....-+ =..-..
T Consensus 209 val~adK~DI~EEl~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEmnRE~NTigSKs~d~~is~~v---------Ve~K~e 279 (291)
T TIGR00255 209 AALLAQRIDIAEEIDRLDSHVKEFYNILKKGEAVGRKLDFMMQELNRESNTLASKAIDADITNLA---------VEMKVL 279 (291)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHhHHHHHHHHccCcHHHHHHH---------HHHHHH
Confidence 3 23334444444444444444443333211111245666777777777776665544332211 134568
Q ss_pred HHHHHHHHHhH
Q 022272 243 FEKMEEKVLTM 253 (300)
Q Consensus 243 feR~eeki~~~ 253 (300)
+|+|+|+|.-.
T Consensus 280 iEkiREQVQNI 290 (291)
T TIGR00255 280 IEKIKEQIQNI 290 (291)
T ss_pred HHHHHHHHhcC
Confidence 89999988643
No 321
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=50.97 E-value=1.2e+02 Score=23.66 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL 161 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdL 161 (300)
|...+..+...+..+...+..+-.....++.+.+.....|.........+|..-.+.|
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~l 62 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQL 62 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555566666666666666666677777777777776666666544433
No 322
>PRK15396 murein lipoprotein; Provisional
Probab=50.81 E-value=1.1e+02 Score=23.37 Aligned_cols=8 Identities=13% Similarity=0.459 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 022272 220 SAKTATKV 227 (300)
Q Consensus 220 ~Akaq~~v 227 (300)
+++|.+++
T Consensus 62 A~raN~Rl 69 (78)
T PRK15396 62 AARANQRL 69 (78)
T ss_pred HHHHHHHH
Confidence 33333333
No 323
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=50.78 E-value=2e+02 Score=26.42 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=9.5
Q ss_pred CchHHHHHHHHHHHHHH
Q 022272 76 MNLFDRLARVVKSYANA 92 (300)
Q Consensus 76 Msif~Rl~~li~a~~n~ 92 (300)
.|-|...++.+...+..
T Consensus 59 ~gsl~~aw~~~~~e~e~ 75 (258)
T cd07655 59 YGTLETAWKGLLSEAER 75 (258)
T ss_pred CChHHHHHHHHHHHHHH
Confidence 34555666666555554
No 324
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=50.66 E-value=91 Score=26.23 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 192 NLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (300)
Q Consensus 192 ~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (300)
.|..++.+|...+..++.+++.++.+...+.
T Consensus 85 ~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 85 ELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566667777777777777766653
No 325
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.52 E-value=76 Score=25.40 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (300)
Q Consensus 107 ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~ 152 (300)
.+++++.++...+..++++......|+.+++.++...+=.++.|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 4567777777778887777777777777777776644444445543
No 326
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=49.98 E-value=1.8e+02 Score=25.46 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 022272 133 ENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (300)
Q Consensus 133 e~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 180 (300)
..-..+....+..+......++..++-+-|...+.+..-+.+-...+.
T Consensus 117 ~~l~~~v~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y~~kl~~ei~ 164 (173)
T PRK01773 117 TAFSKEIKQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLIIEIE 164 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666667777788889998888888888776665444433
No 327
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=49.69 E-value=95 Score=22.29 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 190 VNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (300)
+++|..++..|..|+..+......+++-.+.|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 328
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=49.52 E-value=3.2e+02 Score=28.27 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=17.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 157 GEEDLAREALKRRKSYADNANALKAQLDQQ 186 (300)
Q Consensus 157 G~EdLAreAL~rk~~~e~~~~~le~ql~~~ 186 (300)
++.+..+..-.+...++.....+...+...
T Consensus 341 ~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~ 370 (560)
T PF06160_consen 341 NELEIVRELEKQLKELEKRYEDLEERIEEQ 370 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445556666666666666666666555543
No 329
>PLN03188 kinesin-12 family protein; Provisional
Probab=49.36 E-value=4.6e+02 Score=30.14 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcCcH
Q 022272 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAE-------QASEDWYRKAQLALQKGEE 159 (300)
Q Consensus 107 ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~-------~~i~~~e~rA~~AL~~G~E 159 (300)
.-.|++++++.|-..-|+.+-..-.|+.+|.++- +-|++....|-.|=.+|.+
T Consensus 1094 c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~ 1153 (1320)
T PLN03188 1094 CAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAE 1153 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3457777788888888888877777777776544 4456666666666666654
No 330
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=49.17 E-value=1.1e+02 Score=22.90 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 179 LKAQLDQQKNVVNNLVSNTRLLESK 203 (300)
Q Consensus 179 le~ql~~~~~~v~~L~~~l~~Le~k 203 (300)
|+..+.++-..+..|+..+.+|+.+
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 331
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.16 E-value=1.9e+02 Score=25.56 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=5.8
Q ss_pred HHHHHHHHHH
Q 022272 82 LARVVKSYAN 91 (300)
Q Consensus 82 l~~li~a~~n 91 (300)
|++++.+=++
T Consensus 32 VKdvlq~LvD 41 (188)
T PF03962_consen 32 VKDVLQSLVD 41 (188)
T ss_pred HHHHHHHHhc
Confidence 5566665555
No 332
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=49.03 E-value=1.5e+02 Score=24.48 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 163 REALKRRKSYADNANALKAQLD-----QQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (300)
Q Consensus 163 reAL~rk~~~e~~~~~le~ql~-----~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (300)
..||.+...+.+...-|+.-=. .....++.|+..+..|+-+|..++++.+.+.-+..
T Consensus 40 ~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~ 101 (119)
T COG1382 40 EKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLE 101 (119)
T ss_pred HHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443332111 23344455555555555555555555555544433
No 333
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=48.93 E-value=2.5e+02 Score=26.91 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 022272 108 VLEMNDDLVK 117 (300)
Q Consensus 108 Ireme~~l~k 117 (300)
+..++.++.+
T Consensus 101 ~~~~~a~l~~ 110 (370)
T PRK11578 101 IKEVEATLME 110 (370)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 334
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=48.89 E-value=3e+02 Score=27.73 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 106 QAVLEMNDDLVKMRQATAQVLASQK 130 (300)
Q Consensus 106 Q~Ireme~~l~kar~alA~v~A~~k 130 (300)
|-+-+++..+.+..+....+.++.-
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~ 37 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLV 37 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333333333
No 335
>PF15294 Leu_zip: Leucine zipper
Probab=48.86 E-value=2.4e+02 Score=26.72 Aligned_cols=104 Identities=15% Similarity=0.257 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 180 (300)
..+|.-.|+.+.++-.+++..+..+-......-.+-..++.++.++.. ..+-.+|..++.- -.....++++.+..++
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~--~~~~~~~k~~~~~-~~q~l~dLE~k~a~lK 203 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD--EQGDQKGKKDLSF-KAQDLSDLENKMAALK 203 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhccccccc-cccchhhHHHHHHHHH
Confidence 456777777777777777765554444444444444444444444444 2222333333322 1234445566666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k 210 (300)
.+++.. +.....+...|+..+...+..
T Consensus 204 ~e~ek~---~~d~~~~~k~L~e~L~~~Khe 230 (278)
T PF15294_consen 204 SELEKA---LQDKESQQKALEETLQSCKHE 230 (278)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 444332 333344444555555544433
No 336
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.76 E-value=4.4e+02 Score=29.65 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 180 (300)
.+-+.-.|.+|++-+......+.....+-..++.++.+++.+.+.-..-...+|...-..+....... +..+...+
T Consensus 246 ~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~----~t~l~~~~ 321 (1174)
T KOG0933|consen 246 RKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITRE----ETSLNLKK 321 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 34445556677777777777777777666667777766666666555555556655555444444433 33334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
..++.-+...+++..++.+.+..+.+-
T Consensus 322 ~tl~~e~~k~e~i~~~i~e~~~~l~~k 348 (1174)
T KOG0933|consen 322 ETLNGEEEKLEEIRKNIEEDRKKLKEK 348 (1174)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 444455555555555555555544443
No 337
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=48.64 E-value=1.9e+02 Score=25.50 Aligned_cols=7 Identities=29% Similarity=0.140 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 022272 18 APSSSSS 24 (300)
Q Consensus 18 ~~~~~~~ 24 (300)
++|+.|+
T Consensus 24 ~vS~~p~ 30 (189)
T PF10211_consen 24 FVSSAPA 30 (189)
T ss_pred eeCCCCC
Confidence 5544433
No 338
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=48.49 E-value=3.8e+02 Score=28.89 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKI----QEARSKKDTLKARAQSAKTA 224 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki----~e~k~k~~~LkAr~~~Akaq 224 (300)
++...+-.+|..|+..+..-+... ..++.+...|.-|++.|.-.
T Consensus 580 ~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R 627 (961)
T KOG4673|consen 580 ERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERR 627 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555444333 35667777788888877543
No 339
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=48.14 E-value=3.3e+02 Score=28.14 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLT 252 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~ 252 (300)
.+.++..-.++.++.+...+|...|..++.|+.....+++.+.+-.+..+-.. ....+.++.+++|-.+
T Consensus 218 ~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~-----------~ql~aE~~EleDkyAE 286 (596)
T KOG4360|consen 218 QEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQ-----------RQLTAELEELEDKYAE 286 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHH
Confidence 33444445555566666677777777777777777777777776655543221 1223466777777554
Q ss_pred H
Q 022272 253 M 253 (300)
Q Consensus 253 ~ 253 (300)
.
T Consensus 287 ~ 287 (596)
T KOG4360|consen 287 C 287 (596)
T ss_pred H
Confidence 3
No 340
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=47.74 E-value=1.6e+02 Score=24.30 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 134 NKCKAAEQASEDWYRKAQLALQ----KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 134 ~k~~~~~~~i~~~e~rA~~AL~----~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
+.+..+-...-+|..-....+. ...+.+....+.....++-.+..++..++--..+.+.........+..|+.++.
T Consensus 16 r~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~ 95 (139)
T PF05615_consen 16 RPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKK 95 (139)
T ss_pred hhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433322211 223344445555555555555555555555555555555555555556666666
Q ss_pred HHHHHHHHHHHHHHH
Q 022272 210 KKDTLKARAQSAKTA 224 (300)
Q Consensus 210 k~~~LkAr~~~Akaq 224 (300)
....|+.+...|+..
T Consensus 96 ~ie~lk~~L~~ak~~ 110 (139)
T PF05615_consen 96 EIEELKEELEEAKRV 110 (139)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555555555443
No 341
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=47.68 E-value=66 Score=29.84 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=47.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 157 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 157 G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
++..+---.-.++..+.....+|+.++.++...+..|+..+..|+..=-++..|..-|.
T Consensus 76 ~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 76 GDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666777788899999999999999999999999999998888777777776654
No 342
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=47.68 E-value=2.1e+02 Score=25.59 Aligned_cols=10 Identities=0% Similarity=-0.140 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 022272 110 EMNDDLVKMR 119 (300)
Q Consensus 110 eme~~l~kar 119 (300)
+++..+.+++
T Consensus 104 e~e~~L~~A~ 113 (205)
T PRK06231 104 NAKQRHENAL 113 (205)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 343
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=47.44 E-value=1.1e+02 Score=22.45 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
..+.+..++..++..+..+..++.....++.++..+..+++.+..
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555544443
No 344
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=47.25 E-value=2.7e+02 Score=26.79 Aligned_cols=53 Identities=13% Similarity=0.215 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (300)
+..+.+.+..-......+...|..|..++..++.+++.+-.+-+.|......+
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444444444555556666677777777777777777666666666655554
No 345
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.16 E-value=86 Score=25.08 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
.++.+++.++...++++.....|+.+|..+++
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444444444444444444444444444443
No 346
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=46.81 E-value=2.9e+02 Score=27.03 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 022272 139 AEQASEDWYRKAQLA 153 (300)
Q Consensus 139 ~~~~i~~~e~rA~~A 153 (300)
+.....+|..+..++
T Consensus 129 l~~a~~~~~R~~~L~ 143 (352)
T COG1566 129 LDQAQNELERRAELA 143 (352)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455666666655
No 347
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=46.60 E-value=1.5e+02 Score=23.71 Aligned_cols=104 Identities=20% Similarity=0.184 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (300)
Q Consensus 108 Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~ 187 (300)
+.++...|..-+......+..-..-+..+...+..+.+--.+-...|..++. -...|+.+...-..........+..+.
T Consensus 9 ~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~-k~~rA~k~a~~e~k~~~~k~~ei~~l~ 87 (126)
T PF13863_consen 9 MFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEA-KRERAEKRAEEEKKKKEEKEAEIKKLK 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555544444444444444444444444444444444444333 333455555555555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 188 NVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 188 ~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
..+..|+..+..++.++..++-=..
T Consensus 88 ~~l~~l~~~~~k~e~~l~~~~~Y~~ 112 (126)
T PF13863_consen 88 AELEELKSEISKLEEKLEEYKKYEE 112 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666544333
No 348
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=46.55 E-value=4.9e+02 Score=29.57 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=3.1
Q ss_pred hHHHHhh
Q 022272 268 LEGKFAL 274 (300)
Q Consensus 268 Le~kla~ 274 (300)
++.++++
T Consensus 338 l~~~IAd 344 (1109)
T PRK10929 338 LDTEMAQ 344 (1109)
T ss_pred hHHHHHH
Confidence 4444443
No 349
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=46.42 E-value=3.5e+02 Score=27.91 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH----HHHHHHHHHHH
Q 022272 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS----YADNANALKAQ 182 (300)
Q Consensus 107 ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~----~e~~~~~le~q 182 (300)
-|.++-.++..+..-.....++-.-+..+++..+++-+........+ -.+... ++.....|+.|
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a------------~~~i~~LqDEL~TTr~NYE~Q 488 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEA------------NQNISRLQDELETTRRNYEEQ 488 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhHHHH
Confidence 34444444444444444444455555555555444444433332222 222222 33334455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 183 LDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 183 l~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
+....+++..|..++.+-+..|+.+|
T Consensus 489 Ls~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 489 LSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666655555555554
No 350
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=45.96 E-value=3.3e+02 Score=27.40 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQ 124 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~ 124 (300)
|-.-|.|+++.+..+|..|+.
T Consensus 218 Ll~kVdDLQD~VE~LRkDV~~ 238 (424)
T PF03915_consen 218 LLTKVDDLQDLVEDLRKDVVQ 238 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333466777777777766654
No 351
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=45.80 E-value=2.4e+02 Score=26.98 Aligned_cols=15 Identities=0% Similarity=0.211 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQ 124 (300)
Q Consensus 110 eme~~l~kar~alA~ 124 (300)
+.+.++..++..+.+
T Consensus 96 ~~~~~~~~~~a~l~~ 110 (370)
T PRK11578 96 QAENQIKEVEATLME 110 (370)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555444433
No 352
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.78 E-value=1.9e+02 Score=24.65 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 199 LLESKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 199 ~Le~ki~e~k~k~~~LkAr~~~ 220 (300)
+|...|.+++.+...+..+...
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444443
No 353
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=45.67 E-value=2.6e+02 Score=27.89 Aligned_cols=30 Identities=7% Similarity=0.140 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 124 QVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~i~~~e~rA~~A 153 (300)
..-...+.+..+++.++.+.....+.....
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~ 61 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQA 61 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666655555443
No 354
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=45.18 E-value=1.1e+02 Score=25.32 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+.++..+..++.++...+..|...+..+...+.+++.-++.+.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777777777766666555
No 355
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=45.11 E-value=1.4e+02 Score=22.83 Aligned_cols=90 Identities=17% Similarity=0.289 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (300)
Q Consensus 117 kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~ 196 (300)
+++..++.+.......+.++..+......+........ .|- .+.....+...+..+...+..+...+..++..
T Consensus 2 ~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~~~------s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 74 (123)
T PF02050_consen 2 QAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-QGV------SVAQLRNYQRYISALEQAIQQQQQELERLEQE 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888888866666554 332 22333445556666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022272 197 TRLLESKIQEARSKKDT 213 (300)
Q Consensus 197 l~~Le~ki~e~k~k~~~ 213 (300)
+......+.+...+...
T Consensus 75 ~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 75 VEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666555555554443
No 356
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=45.03 E-value=1.2e+02 Score=22.23 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhcccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 022272 79 FDRLARVVKSYANAILSSFEDP----EKILEQAVLEMNDDLVKMRQATAQVL-ASQKRLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 79 f~Rl~~li~a~~n~~ld~~EDP----~~mLeQ~Ireme~~l~kar~alA~v~-A~~k~le~k~~~~~~~i~~~e~r 149 (300)
|.-+..-|...++.+-....+. ..-++..|.++++-|.++.-.+-.+= ..+..+..++..++.....+...
T Consensus 1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554322211 35555666666666666665554442 45556666666666666666554
No 357
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=44.89 E-value=2.5e+02 Score=25.78 Aligned_cols=140 Identities=14% Similarity=0.225 Sum_probs=74.9
Q ss_pred cccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH
Q 022272 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKC-------------KAA 139 (300)
Q Consensus 73 ~~~Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~-------------~~~ 139 (300)
|.+-+||.++..+-.. ..++.+++-..-|.+...+..+.|.+++..+..-...-..+..+| ..+
T Consensus 6 ~lP~~l~~~~~~v~~~---~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l 82 (296)
T PF13949_consen 6 GLPPSLLEKSEEVRSE---GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASL 82 (296)
T ss_dssp S--HHHHHHHHHHHHT---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHH
T ss_pred CCChHHHHHHHHHHhC---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHH
Confidence 4455677777766543 234444444455666666666667777766666666666666665 456
Q ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q 022272 140 EQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV-----------VNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 140 ~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~-----------v~~L~~~l~~Le~ki~e~k 208 (300)
...+.++......|-..+.. .+..+ ......+..|..-.+.+... ....-..++.+-.++.+++
T Consensus 83 ~~~l~~~~~~L~~A~~sD~~--~~~~~---~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~ 157 (296)
T PF13949_consen 83 RKELQKYREYLEQASESDSQ--LRSKL---ESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELK 157 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHH--HHHHH---HHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHH
Confidence 66677777666665443221 12221 22223332232222111111 1233345566677777788
Q ss_pred HHHHHHHHHHHH
Q 022272 209 SKKDTLKARAQS 220 (300)
Q Consensus 209 ~k~~~LkAr~~~ 220 (300)
.++..+......
T Consensus 158 ~eR~~~~~~lk~ 169 (296)
T PF13949_consen 158 KEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887776665
No 358
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=44.73 E-value=2.1e+02 Score=24.90 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (300)
Q Consensus 164 eAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~ 218 (300)
..|+...........++.+....+....+|+..+..|+.++..+..+..++.--+
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433333344445555555555555555555555555555555555544433
No 359
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=44.66 E-value=3e+02 Score=26.55 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=0.0
Q ss_pred CcccccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 70 GALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 70 ~~~~~~Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~r 149 (300)
|+.|..-|..++ +.+.++..-|.|.-+-++..+.--+.-+..+...-+.+....-.+...++.-+..
T Consensus 11 ~~~~~~~S~~t~-------------~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~ 77 (310)
T PF09755_consen 11 GAGMTSSSSATR-------------EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF 77 (310)
T ss_pred CCCCCCCCCCch-------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH-------HHHHcCcHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 150 AQ-------LALQKGEEDLAREALK-----------RRKSYADNANALKAQLDQ-QKNVVNNLVSNTRLLESKIQEARSK 210 (300)
Q Consensus 150 A~-------~AL~~G~EdLAreAL~-----------rk~~~e~~~~~le~ql~~-~~~~v~~L~~~l~~Le~ki~e~k~k 210 (300)
.- .+|++..++||...-. +...+...-..++..+++ ++-.+.+|...|..|+.+.......
T Consensus 78 isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~ 157 (310)
T PF09755_consen 78 ISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEE 157 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHH
Q 022272 211 KDTLKA 216 (300)
Q Consensus 211 ~~~LkA 216 (300)
++.|..
T Consensus 158 le~Lr~ 163 (310)
T PF09755_consen 158 LERLRR 163 (310)
T ss_pred HHHHHH
No 360
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=44.28 E-value=3.3e+02 Score=26.98 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (300)
Q Consensus 122 lA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~ 155 (300)
+..+...-..++..+..+-.....+.++-..|+.
T Consensus 194 ~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~ 227 (412)
T PF04108_consen 194 MSTILKELHSLEQEMASLLESLTNHFDQCVTAVR 227 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788899999999999999999999998
No 361
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=44.14 E-value=2.6e+02 Score=25.75 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAILSSFEDP-EKILEQAVLEMN 112 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP-~~mLeQ~Ireme 112 (300)
...||..+-......+-..+-+| ...++..|.++.
T Consensus 89 a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~ 124 (244)
T cd07595 89 AQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQ 124 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666677 356665554443
No 362
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=44.10 E-value=4.6e+02 Score=28.53 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Q 022272 87 KSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL 166 (300)
Q Consensus 87 ~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL 166 (300)
+-++...+.+..|-...+.-.|.+++..|..++..+..+--....++-++..........+.+...+
T Consensus 605 K~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~------------- 671 (769)
T PF05911_consen 605 KEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDL------------- 671 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 022272 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKM 246 (300)
Q Consensus 167 ~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~ 246 (300)
+..+..+...+..++..++.=+..-.++..+..+++.++...+...........-...-.......|..-|..-
T Consensus 672 ------e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAEC 745 (769)
T PF05911_consen 672 ------EAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAEC 745 (769)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHhhcccCCChH
Q 022272 247 EEKVLTMESQADSLNQLTTDDLE 269 (300)
Q Consensus 247 eeki~~~ea~aeA~~el~~~~Le 269 (300)
.+-|.-+--+..++..+...-++
T Consensus 746 QeTI~sLGkQLksLa~~~d~~~d 768 (769)
T PF05911_consen 746 QETIASLGKQLKSLATPEDFLLD 768 (769)
T ss_pred HHHHHHHHHHHHhcCChhhhhcc
No 363
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=43.98 E-value=2.5e+02 Score=25.42 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
.+.++..+..+....+.|+..+.....+|.....+...|++.
T Consensus 99 yek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~h 140 (207)
T PF05010_consen 99 YEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAH 140 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555544
No 364
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=43.98 E-value=1.4e+02 Score=22.41 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
..+....+.|..+-..+...+.+|+..+..++..+..++.+.+.+..
T Consensus 15 a~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 15 AQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555554443
No 365
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.76 E-value=1.2e+02 Score=22.89 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
-.++.++.|-..+.++...++++..+++-|-.|+..++
T Consensus 19 fQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 19 FQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566777777777777777777777777777776654
No 366
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=43.59 E-value=1.7e+02 Score=23.55 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (300)
..+-+.+..++.++...-..+..|+..+..|-..=..++.+-..|..+..
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666655555555555554443
No 367
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=43.56 E-value=1.2e+02 Score=24.17 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=21.1
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANAL--KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 172 ~e~~~~~l--e~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
.|..+..+ ..++...+-.+.+++..+..+..+++.+.+..+.|
T Consensus 54 lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 54 LETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444 44444445555555555555555555555444444
No 368
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=43.49 E-value=2.2e+02 Score=24.62 Aligned_cols=85 Identities=11% Similarity=0.117 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHhcccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP---~~mLeQ~Ireme~~l~kar~alA~v~A~-~k~le~k~~~~~~~i~~~e~rA~~A 153 (300)
+|.++..++..+-..+-+.++.. ..-.+....+.++.|.+++....++..+ ...+. .+...+....+......
T Consensus 31 ~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~---a~~~~~~~~~ea~L~~~ 107 (155)
T PRK06569 31 ITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLE---SEFLIKKKNLEQDLKNS 107 (155)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 67888888877665555554443 3445555556666666666665555444 22222 23334444555555666
Q ss_pred HHcCcHHHHHHH
Q 022272 154 LQKGEEDLAREA 165 (300)
Q Consensus 154 L~~G~EdLAreA 165 (300)
|..+..+.=..+
T Consensus 108 ~~~~~~~~~~~~ 119 (155)
T PRK06569 108 INQNIEDINLAA 119 (155)
T ss_pred HHHHHHHHHHHH
Confidence 666655554444
No 369
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.40 E-value=2.4e+02 Score=28.38 Aligned_cols=32 Identities=16% Similarity=0.356 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Q 022272 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (300)
Q Consensus 128 ~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~E 159 (300)
..+.+..+.+.++.+..........++..|.+
T Consensus 37 ~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~ 68 (429)
T COG0172 37 ERRKLLRELEELQAERNELSKEIGRALKRGED 68 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 34445555556666666665555566666665
No 370
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.21 E-value=2.1e+02 Score=24.45 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 105 eQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
+..+-+-...+...+..+..+......++.++.....++.++..
T Consensus 5 ~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 5 DKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444455555555555566666666666666666666655
No 371
>PRK07737 fliD flagellar capping protein; Validated
Probab=43.03 E-value=2e+02 Score=29.32 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=6.7
Q ss_pred chHHHHHHHHHHHH
Q 022272 77 NLFDRLARVVKSYA 90 (300)
Q Consensus 77 sif~Rl~~li~a~~ 90 (300)
||..||.+++...+
T Consensus 414 Gia~~l~~~l~~~~ 427 (501)
T PRK07737 414 GIARRLRDTLKETI 427 (501)
T ss_pred cHHHHHHHHHHHHH
Confidence 34455554444444
No 372
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=42.95 E-value=1.6e+02 Score=22.81 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022272 190 VNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~ 235 (300)
++++...|.+.+.||.+++.++..|.++..-+....-+ ....+++
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv-~~VR~~~ 47 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIV-QMVRSMK 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcC
Confidence 45677777777788888888887777776666655433 3444444
No 373
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=42.93 E-value=1.3e+02 Score=25.39 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 166 L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
+..+..+|.+-..|.++++++......+...+..++.+++.+
T Consensus 73 v~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 73 VQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566665555555555555555555554443
No 374
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=42.71 E-value=1.5e+02 Score=24.03 Aligned_cols=39 Identities=10% Similarity=0.246 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
.+...+..++..+.......++++..+.++..++..++.
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666655544
No 375
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=42.66 E-value=2.7e+02 Score=25.55 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 129 QKRLENKCKAAEQASEDWYRKAQLAL 154 (300)
Q Consensus 129 ~k~le~k~~~~~~~i~~~e~rA~~AL 154 (300)
-+.+-.+++.+..+-..+....+.++
T Consensus 146 L~~ll~~l~~l~~eR~~~~~~lk~~~ 171 (296)
T PF13949_consen 146 LRELLNKLEELKKEREELLEQLKEKL 171 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555533
No 376
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=42.57 E-value=5.3e+02 Score=28.90 Aligned_cols=134 Identities=14% Similarity=0.192 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCcHHHHHHHHHHHHHHHH
Q 022272 99 DPEKILEQAVLEMNDD-LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA---LQKGEEDLAREALKRRKSYAD 174 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~-l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A---L~~G~EdLAreAL~rk~~~e~ 174 (300)
+|+.+|...++-.... |-..-..|-..-...+++++..+.-...+..+++....- +..=++.....-..+......
T Consensus 159 ~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~ 238 (1072)
T KOG0979|consen 159 SPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKK 238 (1072)
T ss_pred ChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6888888777777666 777777777777777777777777666666665544321 111112221111111111001
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 022272 175 ---NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNV 234 (300)
Q Consensus 175 ---~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~ 234 (300)
........+.......+.++.+++++...+.....++..|.. ....+..++......+
T Consensus 239 ~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~--~~~et~~~~s~~~~~~ 299 (1072)
T KOG0979|consen 239 KWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELES--EKKETRSKISQKQREL 299 (1072)
T ss_pred cccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh--HHHhHHHHHHHHHHHH
Confidence 123446677777888888888888888888888888888877 4445555555544433
No 377
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=42.53 E-value=1.6e+02 Score=22.88 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 022272 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 171 (300)
Q Consensus 106 Q~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~ 171 (300)
+.|.+.+..|..++..=+...+ -..-..+.+.-.+|+.++..|+.+-|+..+..-..
T Consensus 17 ~~l~~A~~ai~~A~~~~a~~~A---------p~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~ 73 (103)
T PF14346_consen 17 EELSDAEAAIQRAEAAGAEQYA---------PVELKEAREKLQRAKAALDDGDYERARRLAEQAQA 73 (103)
T ss_pred HHHHHHHHHHHHHHHcCCcccc---------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555666655555222211 11223344455667888888998877666544333
No 378
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=42.27 E-value=2.3e+02 Score=24.58 Aligned_cols=117 Identities=9% Similarity=0.036 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQ----------------KRLENKCKA 138 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP~---~mLeQ~Ireme~~l~kar~alA~v~A~~----------------k~le~k~~~ 138 (300)
+|+-+..++..+-..+.+.+++.+ .-.++.+.+++..+..++.....++... ..+++.+..
T Consensus 45 l~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~ 124 (184)
T CHL00019 45 GKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENY 124 (184)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 139 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (300)
Q Consensus 139 ~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~ 194 (300)
.+..++.-..+|...++.-=.+||-++..+...-.-.-..-+.-++.+-..+..++
T Consensus 125 a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~~ld~~~~~~lid~~i~~l~~~~ 180 (184)
T CHL00019 125 KNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRTINANIGLLGAMK 180 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHHHHhcc
No 379
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.63 E-value=2.8e+02 Score=25.32 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRL 199 (300)
Q Consensus 128 ~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~ 199 (300)
+.+.+.+++-.++..-.+-+...+.|.++||-+-++-.+.++.+....+..+-..-++.....-+|..++.-
T Consensus 26 e~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~ 97 (227)
T KOG3229|consen 26 EGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLAT 97 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHH
Confidence 445566777777777777788888889999988888877777777776666655555555555555554443
No 380
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=41.58 E-value=2.3e+02 Score=24.35 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=28.5
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (300)
Q Consensus 99 DP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~ 151 (300)
.| ..+|+.--..+.+++..+.....++-......+.++...+.++.+.-..|+
T Consensus 41 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~ 94 (175)
T PRK14472 41 GPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGK 94 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 467776666666666666666555444444444444444444444444333
No 381
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=41.58 E-value=1.3e+02 Score=30.44 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHHHHH--hcccC--CHHHH---HHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 022272 77 NLFDRLARVVKSYANAI--LSSFE--DPEKI---LEQAVLEMNDDLVK-MRQATAQVL-ASQKRLENKCKAAEQASEDWY 147 (300)
Q Consensus 77 sif~Rl~~li~a~~n~~--ld~~E--DP~~m---LeQ~Ireme~~l~k-ar~alA~v~-A~~k~le~k~~~~~~~i~~~e 147 (300)
+.++||.+.|-++.+.- |+.++ ||..| .-+..-+.--+... +.+++-... .......++++++++++++-.
T Consensus 61 ~AL~rLl~~~p~~~~~~~~Ls~l~~~dm~~m~mMat~L~l~~~ad~a~s~~kq~ei~td~Q~~LR~k~~~e~q~qi~ka~ 140 (473)
T PRK15362 61 NALKRILDAVPGNHKRPLSLSDFEQTPMDVMSMMATLLILSVFGDNAQSLCQALEIATEVQEALRDKQVKEYQEQIQKAI 140 (473)
T ss_pred HHHHHHHhhccCCCCCCcchHhhcCCChHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888887766555 77777 67432 22222222211111 111111111 122444567888999999988
Q ss_pred HHHHHHHHcCc
Q 022272 148 RKAQLALQKGE 158 (300)
Q Consensus 148 ~rA~~AL~~G~ 158 (300)
+++..|-+.|=
T Consensus 141 e~adkA~KagI 151 (473)
T PRK15362 141 EQEDKARKAGI 151 (473)
T ss_pred HHHHHHHhccH
Confidence 88888877764
No 382
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.44 E-value=4.4e+02 Score=27.66 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=0.0
Q ss_pred cccccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 71 ALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (300)
Q Consensus 71 ~~~~~Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA 150 (300)
++|.--+.-+++.+-.-.+-..++....--+.-+-+.|-+++.+|.+.|+.++.+..+..++.+........-...+.+=
T Consensus 72 al~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR 151 (772)
T KOG0999|consen 72 ALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQR 151 (772)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 151 QLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS---NTRLLESKIQEARSKKDTLKARAQSAKTATKV 227 (300)
Q Consensus 151 ~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~---~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v 227 (300)
..--..=.|--=|++ .+-.....|+.+--.+..+|..|+. .+.-|+..|..+....+.|.....-+---+.|
T Consensus 152 ~rlr~elKe~KfRE~-----RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~I 226 (772)
T KOG0999|consen 152 RRLRDELKEYKFREA-----RLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEI 226 (772)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 022272 228 SE 229 (300)
Q Consensus 228 ~~ 229 (300)
.+
T Consensus 227 Ae 228 (772)
T KOG0999|consen 227 AE 228 (772)
T ss_pred HH
No 383
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=41.40 E-value=5.6e+02 Score=28.82 Aligned_cols=97 Identities=10% Similarity=0.206 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHH
Q 022272 108 VLEMNDDLVKMRQATAQ-------VLASQKR--LENKCKAAEQASEDWYRKAQLALQKG--EEDLAREALKRRKSYADNA 176 (300)
Q Consensus 108 Ireme~~l~kar~alA~-------v~A~~k~--le~k~~~~~~~i~~~e~rA~~AL~~G--~EdLAreAL~rk~~~e~~~ 176 (300)
|-|+-.+|.+++..|+. .|+..+- .+.+++....++++++.+....-..= -.++.---+.-+..+.++.
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555443 3444333 33444445555555444433321110 0111122222233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKI 204 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki 204 (300)
..++..++........++..+.+++..|
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 384
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=41.37 E-value=1.7e+02 Score=22.84 Aligned_cols=91 Identities=13% Similarity=0.220 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (300)
Q Consensus 106 Q~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~ 185 (300)
+.|-.|+.+..+....+-.-......++.++..+..++.+-.++-..|.+ .+..+......|..++..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr------------~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMR------------SKDALDNEMKKLNTQLSK 70 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777766665554433 233445566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022272 186 QKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 186 ~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
....+.+|+..-..+..+|..++
T Consensus 71 s~~~i~~L~~~E~~~~~~l~~~E 93 (96)
T PF08647_consen 71 SSELIEQLKETEKEFVRKLKNLE 93 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777775555555555544
No 385
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=41.33 E-value=2.7e+02 Score=25.14 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 180 (300)
+.+|.|.++|...++..=-..+..+.+.-+....++...+..+..+...... -.-.++..+
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~-------------------K~~ELE~ce 72 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRT-------------------KQLELEVCE 72 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------------------hhHhHHHhH
Confidence 5788888888888887766667666666555555555555555544432211 122344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
.++......++-|+..+..++..+..++.....+
T Consensus 73 ~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 73 NELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 6666666666677777777777777776666654
No 386
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=41.28 E-value=4.6e+02 Score=27.75 Aligned_cols=24 Identities=4% Similarity=0.050 Sum_probs=16.8
Q ss_pred hcCCCCCcHHHHHHHHHHHHHhHH
Q 022272 231 LGNVNTSSALSAFEKMEEKVLTME 254 (300)
Q Consensus 231 ~~~~~~~~a~~~feR~eeki~~~e 254 (300)
+..++.....-.|+.+.++|+.+-
T Consensus 479 ~~~~D~~gl~l~L~~l~~~vd~Lp 502 (656)
T PRK06975 479 APSADLTGLAIKLDDAIAKIDALP 502 (656)
T ss_pred CCcCCHHHHHHHHHHHHHHHhhCc
Confidence 345566677788888888887663
No 387
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=41.16 E-value=3e+02 Score=25.53 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Q 022272 106 QAVL------EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179 (300)
Q Consensus 106 Q~Ir------eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l 179 (300)
+.++ ||++.+...+.-+-..+..+..+-.++.+++.+.+.... +.+.++.....|
T Consensus 122 ktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~e-------------------rlk~le~E~s~L 182 (290)
T COG4026 122 KTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQE-------------------RLKRLEVENSRL 182 (290)
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 180 KAQLDQQKNVVNNLVSNTRLLESKIQ 205 (300)
Q Consensus 180 e~ql~~~~~~v~~L~~~l~~Le~ki~ 205 (300)
+..+......+..|+....+|+.+++
T Consensus 183 eE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 183 EEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHhchhHHHHHHHHHHHhccccc
No 388
>PF14992 TMCO5: TMCO5 family
Probab=41.16 E-value=3.2e+02 Score=25.94 Aligned_cols=122 Identities=13% Similarity=0.184 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCcHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA-------QLALQKGEEDLAREALKRRKSYADNA 176 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA-------~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (300)
.+..+.+-+.++.++....+..--..+-+-+-+.+++.++.+-+... ..-++-- +.-=......-..+++++
T Consensus 54 e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~s-k~~lqql~~~~~~qE~ei 132 (280)
T PF14992_consen 54 EDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFS-KNKLQQLLESCASQEKEI 132 (280)
T ss_pred HhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHh-hhhHHHHHHHHHHHHHHH
Confidence 35555555555655555544444444334334444444443333221 0111100 012233444445566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATK 226 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~ 226 (300)
..++..+++.....+.--..+.+++.+++.++..++++.-.....+++..
T Consensus 133 ~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 133 AKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 66666666665555555666778888888888888888877777666654
No 389
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=41.14 E-value=1.1e+02 Score=22.20 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 190 VNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
++.|...|..|+..|..++..+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444443
No 390
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.29 E-value=3.4e+02 Score=25.96 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022272 186 QKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 186 ~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
+......+..++++++..|...+
T Consensus 166 l~~~~~~~s~~~~k~esei~~Ik 188 (300)
T KOG2629|consen 166 LKNTLVQLSRNIEKLESEINTIK 188 (300)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Confidence 33333355566666666666555
No 391
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=40.19 E-value=77 Score=29.44 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=24.7
Q ss_pred CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 98 EDP--EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (300)
Q Consensus 98 EDP--~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i 143 (300)
-|| +.+|.+.|+.-=+..-.+-+.+--.-.--+++..++++++.++
T Consensus 24 rD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 24 RDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQL 71 (247)
T ss_pred CCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377 5777777777666555555554433333344444444444443
No 392
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=40.12 E-value=2e+02 Score=27.96 Aligned_cols=13 Identities=8% Similarity=0.026 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 022272 112 NDDLVKMRQATAQ 124 (300)
Q Consensus 112 e~~l~kar~alA~ 124 (300)
+.++.+++..++.
T Consensus 102 ~~~l~~a~A~l~~ 114 (397)
T PRK15030 102 QATYDSAKGDLAK 114 (397)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 393
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=40.10 E-value=4.9e+02 Score=27.74 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCc----HHHHHHHHHHHHHHHHHHHHHHH
Q 022272 130 KRLENKCKAAEQASEDWYRKAQLALQKGE----EDLAREALKRRKSYADNANALKA 181 (300)
Q Consensus 130 k~le~k~~~~~~~i~~~e~rA~~AL~~G~----EdLAreAL~rk~~~e~~~~~le~ 181 (300)
.-++.++..++.+.+..+.+...-.++.+ +.-|...+.+..+++.++..++.
T Consensus 270 ~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~ 325 (726)
T PRK09841 270 EFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTF 325 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333322221 11234444555555555544443
No 394
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=39.66 E-value=2.2e+02 Score=23.71 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKV 227 (300)
Q Consensus 167 ~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v 227 (300)
.|....++.+..+...+......+..|...-.....+|.+++++-..|.-|.-.--....+
T Consensus 37 ~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~ei 97 (141)
T PF13874_consen 37 KRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEI 97 (141)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777777776676777778888888888777775443333333
No 395
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=39.50 E-value=2.2e+02 Score=23.63 Aligned_cols=106 Identities=14% Similarity=0.229 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP~---~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL 154 (300)
+|+.+.+++..+-+.+.+.+++.+ .-.+..+.+.+..+.+++.....++ ..-...--...+..+.+....+..=.
T Consensus 25 ~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~--~~a~~ea~~~~~~~~~~a~~ea~~~~ 102 (156)
T PRK05759 25 VWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEII--EQAKKRAAQIIEEAKAEAEAEAARIK 102 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (300)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~le~ql~~ 185 (300)
..++.++..+--.-+.++..++..+--.+..
T Consensus 103 ~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~ 133 (156)
T PRK05759 103 AQAQAEIEQERKRAREELRKQVADLAVAGAE 133 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 396
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=39.35 E-value=2.7e+02 Score=30.49 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Q 022272 140 EQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (300)
Q Consensus 140 ~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (300)
...+++.-++.+...+.|+-|-|++.|.+..+.-+.+.
T Consensus 537 ~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq 574 (820)
T PF13779_consen 537 QQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQ 574 (820)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence 34445555566666677777777777776555544433
No 397
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=39.23 E-value=2.8e+02 Score=24.76 Aligned_cols=42 Identities=21% Similarity=0.115 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Q 022272 118 MRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (300)
Q Consensus 118 ar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~E 159 (300)
....+..+...+...+....+++..+.+-..+|..-+...++
T Consensus 89 I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ 130 (204)
T PRK09174 89 IAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAARE 130 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555555555555444444433
No 398
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=39.19 E-value=72 Score=21.92 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 179 le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
|+..++..++.++.+. .+|++++.|+..|..+
T Consensus 10 Lqe~~d~IEqkiedid-------~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDID-------EQIAELEAKRQRLVDQ 41 (46)
T ss_dssp -----THHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHH-------HHHHHHHHHHHHHHHh
Confidence 4555565555555544 4455555556666544
No 399
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=39.09 E-value=4.7e+02 Score=27.23 Aligned_cols=189 Identities=14% Similarity=0.226 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHhcccCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 77 NLFDRLARVVKSYANAILSSFED--------PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 77 sif~Rl~~li~a~~n~~ld~~ED--------P~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
+++.-+.+.+=+.++++=+...| |..-||-.+..+.+++.+....+.+.- -...+-++..++..++.+++
T Consensus 218 ~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~Le--ld~aeeel~~I~e~ie~lYd 295 (570)
T COG4477 218 SLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQLE--LDEAEEELGLIQEKIESLYD 295 (570)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHHHhh--hhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 022272 149 KAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR----------LLESKIQEARSKKDTLKARA 218 (300)
Q Consensus 149 rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~----------~Le~ki~e~k~k~~~LkAr~ 218 (300)
.-..=+.+++. +.....-+-..+...+..-......++.++..+. +++.+|+++..-...+....
T Consensus 296 ~lE~EveA~~~-----V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~ 370 (570)
T COG4477 296 LLEREVEAKNV-----VEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENI 370 (570)
T ss_pred HHHHHHHHHHH-----HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChHHHHhhhccC--CHHHHHHHHHHHc
Q 022272 219 QSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETS--SVDDDLANLKKEL 291 (300)
Q Consensus 219 ~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~aeA~~el~~~~Le~kla~le~~--~vddeLarLKa~l 291 (300)
... .+..+.+.+.|+.++..+...+...+-+. ..|..|.+. .+.+.|.+++.++
T Consensus 371 ~~~-----------~~~yS~lq~~l~~~~~~l~~i~~~q~~~~--------e~L~~LrkdEl~Are~l~~~~~~l 426 (570)
T COG4477 371 EAQ-----------EVAYSELQDNLEEIEKALTDIEDEQEKVQ--------EHLTSLRKDELEARENLERLKSKL 426 (570)
T ss_pred hcc-----------cccHHHHHHHHHHHHHHHHHHhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
No 400
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=38.99 E-value=4.2e+02 Score=26.68 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=15.9
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcc
Q 022272 236 TSSALSAFEKMEEKVLTMESQADSLNQL 263 (300)
Q Consensus 236 ~~~a~~~feR~eeki~~~ea~aeA~~el 263 (300)
..++..++..+..+-...+.-+++...+
T Consensus 109 ~~n~~~~l~~~~~~~r~~e~la~~~~~l 136 (459)
T KOG0288|consen 109 FENAELALREMRRKMRIAERLAEALKDL 136 (459)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHhhhc
Confidence 3445556666666655555555555444
No 401
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=38.90 E-value=6.1e+02 Score=28.55 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKR 131 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~ 131 (300)
+++.|.+++..+.+.++........+++
T Consensus 203 lr~eLddleae~~klrqe~~e~l~ea~r 230 (1195)
T KOG4643|consen 203 LRNELDDLEAEISKLRQEIEEFLDEAHR 230 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444433
No 402
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=38.89 E-value=3.8e+02 Score=26.08 Aligned_cols=15 Identities=7% Similarity=0.357 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 022272 132 LENKCKAAEQASEDW 146 (300)
Q Consensus 132 le~k~~~~~~~i~~~ 146 (300)
+++++.++++....+
T Consensus 9 L~~efq~Lqethr~Y 23 (330)
T PF07851_consen 9 LQKEFQELQETHRSY 23 (330)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 403
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=38.80 E-value=1.7e+02 Score=22.39 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
...++...+..+..+..|+..+..++.++.+++.++
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555443
No 404
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=38.79 E-value=2e+02 Score=29.41 Aligned_cols=78 Identities=6% Similarity=0.124 Sum_probs=53.4
Q ss_pred ccccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 72 LNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (300)
Q Consensus 72 ~~~~Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~ 151 (300)
.+..+||=+++...+...+...+.-+.+-..-|+-.|..+..++.-....+.. .+.++..++..++..+..+..+..
T Consensus 395 d~~~~Gia~~l~~~l~s~~~~t~g~i~~~~~~l~~~i~~l~~~i~~~~~rl~~---~e~~~~~qf~~m~~~~~~m~sq~~ 471 (483)
T COG1345 395 DGKDTGIAKTLGEGLNSLLAVTGGIITGRTDSLNKQIKSLDKDIKSLDKRLEA---AEERYKTQFNTLDDMMTQMNSQSS 471 (483)
T ss_pred CccccchHHHHhhhhHHHHhhccceeeccccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888877666666666666666776666666555443 455666777777777776666654
Q ss_pred H
Q 022272 152 L 152 (300)
Q Consensus 152 ~ 152 (300)
.
T Consensus 472 ~ 472 (483)
T COG1345 472 Y 472 (483)
T ss_pred H
Confidence 3
No 405
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=38.69 E-value=2.6e+02 Score=24.27 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 022272 103 ILEQAVLEMNDDLVKMRQATAQV-----LASQKRLENKCKAAEQASEDWY 147 (300)
Q Consensus 103 mLeQ~Ireme~~l~kar~alA~v-----~A~~k~le~k~~~~~~~i~~~e 147 (300)
.|--+|.|++..+......+..- .-.-.++-.++..+...+..|.
T Consensus 41 ~L~~yl~Ei~~~l~~L~~~~~~~~~~~~~~laEkL~~Q~~AL~r~l~t~~ 90 (173)
T PF07445_consen 41 RLSDYLQEIEQTLAQLQQQVEQNRLQQVAFLAEKLVAQIEALQRELATQS 90 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556666666666666654432 2233445556666666666554
No 406
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=38.57 E-value=75 Score=21.84 Aligned_cols=13 Identities=8% Similarity=0.302 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQ 185 (300)
Q Consensus 173 e~~~~~le~ql~~ 185 (300)
|..++.+..+++.
T Consensus 18 Eqkiedid~qIae 30 (46)
T PF08946_consen 18 EQKIEDIDEQIAE 30 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH
Confidence 3444444444433
No 407
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=38.49 E-value=5.3e+02 Score=27.70 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 160 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 160 dLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
|-.-....++...-.....|.........++.+|......+..+|..++.+..-+...
T Consensus 482 d~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~ 539 (698)
T KOG0978|consen 482 DKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSN 539 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3344444444444444455555555555555555555555555555555555544443
No 408
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.37 E-value=5.3e+02 Score=27.65 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=67.3
Q ss_pred cccCchHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-------
Q 022272 73 NTRMNLFDRLARVVKSYANAILSSFE--DPEKILEQAVLEMNDDLVKMRQA-------TAQVLASQKRLENKC------- 136 (300)
Q Consensus 73 ~~~Msif~Rl~~li~a~~n~~ld~~E--DP~~mLeQ~Ireme~~l~kar~a-------lA~v~A~~k~le~k~------- 136 (300)
-.+|++..|+...++..+-++...-+ +-.+.+.-.|+...+.-.-.... .-...-..+++...+
T Consensus 356 ~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~r 435 (716)
T KOG4593|consen 356 TSPARGLERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKER 435 (716)
T ss_pred cCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHH
Confidence 56788999999999988877766544 33444444443333322222222 111222223333322
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 137 KAAEQASEDWYRKAQLALQKGEEDLAREA---LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 137 ~~~~~~i~~~e~rA~~AL~~G~EdLAreA---L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
++++..+......--. +..-.+++-++. ..+....+..+..|..++....+.+..-+....-+..+|..+..++..
T Consensus 436 eqlk~lV~~~~k~~~e-~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~ 514 (716)
T KOG4593|consen 436 EQLKGLVQKVDKHSLE-MEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELEL 514 (716)
T ss_pred HHHHHHHHHHHHhhHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2222222222221111 111123333332 233334566666666666665555554444444445556666665555
Q ss_pred HHHH
Q 022272 214 LKAR 217 (300)
Q Consensus 214 LkAr 217 (300)
|.--
T Consensus 515 Le~E 518 (716)
T KOG4593|consen 515 LEEE 518 (716)
T ss_pred HHHH
Confidence 5433
No 409
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=38.25 E-value=1.6e+02 Score=30.96 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=12.4
Q ss_pred CCCccccccc-cc-ccccccc
Q 022272 25 SSSSSLCMVK-KP-LTTSFFN 43 (300)
Q Consensus 25 ~~~~~~~~~~-~~-~~~~~~~ 43 (300)
++.|..|++| .. ++.+||.
T Consensus 13 gn~s~~~~lR~S~~~r~~w~~ 33 (907)
T KOG2264|consen 13 GNGSFVPSLRVSAFLRFIWFV 33 (907)
T ss_pred CCCCcCeeeeehhhHHHHHHH
Confidence 4456778887 33 7777774
No 410
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=38.14 E-value=5.7e+02 Score=27.97 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 100 PEKILEQAVLEMNDDLVKMRQATAQV 125 (300)
Q Consensus 100 P~~mLeQ~Ireme~~l~kar~alA~v 125 (300)
..+-+.+.+..+.+.+..+...+...
T Consensus 323 ~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 323 KLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555444444
No 411
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=38.09 E-value=5.2e+02 Score=27.51 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 199 LLESKIQEARSKKDTLKARAQSAK 222 (300)
Q Consensus 199 ~Le~ki~e~k~k~~~LkAr~~~Ak 222 (300)
.|+...+-.+.-...|..|.+.++
T Consensus 374 ~L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 374 RLSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 412
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.68 E-value=2.7e+02 Score=24.07 Aligned_cols=124 Identities=9% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022272 82 LARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVL-ASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (300)
Q Consensus 82 l~~li~a~~n~~ld~~EDP---~~mLeQ~Ireme~~l~kar~alA~v~-A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G 157 (300)
+..+++.-+++-++.+... -.-++......+..+.++|..+.... ..-..+..+.+.++.+++.+..+...=+.+=
T Consensus 24 i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l 103 (177)
T PF07798_consen 24 IMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKL 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
+.++=-..=.+|....+....++..+.+....++. .+..|+..|+..|
T Consensus 104 ~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~---ei~~lr~~iE~~K 151 (177)
T PF07798_consen 104 RAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDT---EIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
No 413
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=37.63 E-value=2.3e+02 Score=23.31 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (300)
Q Consensus 108 Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA 150 (300)
|..|...|......++.+.-.-.+++...+.+..++-++....
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555544433
No 414
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=37.54 E-value=4.5e+02 Score=26.55 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred ccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Q 022272 96 SFEDPEKILE---QAVLEMNDDLVKMRQATAQVLAS-------QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREA 165 (300)
Q Consensus 96 ~~EDP~~mLe---Q~Ireme~~l~kar~alA~v~A~-------~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreA 165 (300)
.+-||+.-.. +.|-.++.+|.+.+..++.+... -..++.++..++++|++...+.-..-..|
T Consensus 273 gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~-------- 344 (434)
T PRK15178 273 KDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQ-------- 344 (434)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCC--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 166 L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
.+...+..|+..--+.+=....+...+..|+.=-.+..++...|
T Consensus 345 -----~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~~YL 388 (434)
T PRK15178 345 -----GSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRERQYL 388 (434)
T ss_pred -----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhe
No 415
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=37.46 E-value=4.2e+02 Score=26.20 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=11.6
Q ss_pred CCcccccCCCcccccC
Q 022272 61 RSHCYRQGGGALNTRM 76 (300)
Q Consensus 61 ~~~~~~~~~~~~~~~M 76 (300)
+....++|||...-.+
T Consensus 194 Dviii~RGGGS~eDL~ 209 (438)
T PRK00286 194 DVLIVARGGGSLEDLW 209 (438)
T ss_pred CEEEEecCCCCHHHhh
Confidence 6677889999765443
No 416
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=37.46 E-value=2.3e+02 Score=23.26 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 133 ENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 133 e~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
...++.+..-+++.+.+...-+...-++|-..+ ..+..++..++..+..+..|...+..++.+|-+=..+..
T Consensus 32 ~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~--------~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~ 103 (132)
T PF10392_consen 32 STPLKKLNFDIQELDKRIRSQVTSNHEDLLSQA--------SSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQ 103 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344555566666666666667777777774444 223344444455555555555555556665555555555
Q ss_pred HHHHHHHH
Q 022272 213 TLKARAQS 220 (300)
Q Consensus 213 ~LkAr~~~ 220 (300)
.+......
T Consensus 104 ~~~~~L~r 111 (132)
T PF10392_consen 104 KLTSQLER 111 (132)
T ss_pred HHHHHHHH
Confidence 44444333
No 417
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.36 E-value=3.8e+02 Score=25.75 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k 135 (300)
..|..-++.+++.-...|.....+.......+.+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek 196 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEK 196 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH
Confidence 6777778888887777777777666555544444
No 418
>PLN02678 seryl-tRNA synthetase
Probab=37.28 E-value=4.5e+02 Score=26.55 Aligned_cols=22 Identities=0% Similarity=0.009 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 129 QKRLENKCKAAEQASEDWYRKA 150 (300)
Q Consensus 129 ~k~le~k~~~~~~~i~~~e~rA 150 (300)
.+.+..+++.++.+........
T Consensus 42 ~r~l~~~~e~lr~erN~~sk~I 63 (448)
T PLN02678 42 WRQRQFELDSLRKEFNKLNKEV 63 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 419
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=37.20 E-value=1.2e+02 Score=28.39 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
++.+..++..+..++..|+.+...+..+|.+++.+++-|
T Consensus 73 ~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 73 RQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444455555555555555555555555554444
No 420
>PRK12472 hypothetical protein; Provisional
Probab=37.15 E-value=4.8e+02 Score=26.81 Aligned_cols=101 Identities=21% Similarity=0.194 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG-EEDLAREALKRRKSYADNANALKAQLDQQKN 188 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G-~EdLAreAL~rk~~~e~~~~~le~ql~~~~~ 188 (300)
|.+....+..+.++.+.+.-+.+|+...+...+... |..+|..- .++--..+..+++..+.++.+...+++..+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~----adk~l~~a~~d~~~~~a~~~~~~~~~~~~~a~~~~~~a~~ 283 (508)
T PRK12472 208 EAKTAAAAAAREAAPLKASLRKLERAKARADAELKR----ADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKA 283 (508)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555444433 33333332 2223334456888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 189 VVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 189 ~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
..+.-.......+........++...
T Consensus 284 ~~~~~~~~~~~~~~a~~~a~~~~~~~ 309 (508)
T PRK12472 284 DAEAKRAAAAATKEAAKAAAAKKAET 309 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 77776666666666555555555443
No 421
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.10 E-value=2.3e+02 Score=23.10 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022272 111 MNDDLVKMRQATAQVLASQK 130 (300)
Q Consensus 111 me~~l~kar~alA~v~A~~k 130 (300)
+.+++..+......+.+...
T Consensus 19 lq~~l~~~~~q~~~le~q~~ 38 (121)
T PRK09343 19 LQQQLERLLQQKSQIDLELR 38 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333333333
No 422
>PRK08453 fliD flagellar capping protein; Validated
Probab=37.03 E-value=2e+02 Score=30.68 Aligned_cols=69 Identities=9% Similarity=0.129 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 77 sif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
|||.||..++...+...-..+..-..-|...+..+++++.+....+. ..+.++++++.+++..+.++..
T Consensus 599 Gi~~rl~~~L~~~i~g~~G~l~~~~~sL~~q~k~L~~q~~~~e~rL~---~ry~rl~~qFsAmDs~IsqmNs 667 (673)
T PRK08453 599 GIFSKFNQVIANLIDGGNAKLKIYEDSLTRDAKSLTKDKENAQELLK---TRYDIMAERFAAYDSQISKANQ 667 (673)
T ss_pred cHHHHHHHHHHHHhcCCCceehhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 67888887777765432112333344466666666666655554432 3445555556666665555543
No 423
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=37.03 E-value=1.2e+02 Score=24.55 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
.+..++.++..+++.|..++..+...+.+++.=++.|
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666655555
No 424
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=37.01 E-value=4.1e+02 Score=25.92 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 022272 107 AVLEMNDDLVKM 118 (300)
Q Consensus 107 ~Ireme~~l~ka 118 (300)
.+...+.++..+
T Consensus 100 ~l~~A~a~l~~a 111 (390)
T PRK15136 100 AFEKAKTALANS 111 (390)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 425
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=36.99 E-value=11 Score=39.91 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (300)
Q Consensus 103 mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i 143 (300)
.++..++++...+......+..+....+.+..+...++.++
T Consensus 90 ~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el 130 (722)
T PF05557_consen 90 ELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEEL 130 (722)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444444444444444444443333333
No 426
>PHA01750 hypothetical protein
Probab=36.76 E-value=1.3e+02 Score=22.48 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
.+++++..++..++-....++.++.+.+++.
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3344444444444444444555555555443
No 427
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=36.74 E-value=4.6e+02 Score=26.47 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
+.++-..|...+-....+.-.....+..++.+++=...+++-|..
T Consensus 223 ~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 223 LNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444455555555555554444444443
No 428
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=36.74 E-value=3.7e+02 Score=25.34 Aligned_cols=72 Identities=28% Similarity=0.430 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVL 251 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~ 251 (300)
+...+.....++++.+..+..+..+-..|+.||+.-+.+++....|.++-+ ++.+ --++.+|++|+...
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq----------~vRP-AfmdEyEklE~EL~ 235 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ----------SVRP-AFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCh-HHHHHHHHHHHHHH
Confidence 344566667777777777777777778888888887777776666655542 2222 22578888888766
Q ss_pred hHH
Q 022272 252 TME 254 (300)
Q Consensus 252 ~~e 254 (300)
...
T Consensus 236 ~lY 238 (267)
T PF10234_consen 236 KLY 238 (267)
T ss_pred HHH
Confidence 554
No 429
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=36.70 E-value=4.5e+02 Score=26.36 Aligned_cols=51 Identities=8% Similarity=0.127 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~ 152 (300)
.+|++--..+.++|.++...-.++-..+...++++...+.+..+.-+.|+.
T Consensus 28 ~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~ 78 (445)
T PRK13428 28 RLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEARE 78 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555543333333444444444444444444444333
No 430
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=36.67 E-value=1.7e+02 Score=21.56 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (300)
..+-.....++.+-.....++..+...-..|..|.+.++.+.+.+..|..+
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344445556666666677777777777778888888888888888877654
No 431
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=36.48 E-value=2.2e+02 Score=28.65 Aligned_cols=54 Identities=7% Similarity=0.064 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (300)
Q Consensus 128 ~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~ 196 (300)
....+..++..++.+++.|+.|... +...|..+...++..+.++..+-.-|..+
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~---------------~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDA---------------TIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556666666666666666554 12234555555555555555555554433
No 432
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=36.40 E-value=2.2e+02 Score=25.69 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (300)
Q Consensus 77 sif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~ 145 (300)
||.++|..++...++.--..+..-...|+-.|..+++.+......+.. .+.++..++..++..+.+
T Consensus 171 Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~---~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 171 GIATRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLES---KEERLRKQFSAMESLISQ 236 (239)
T ss_pred cHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 566666666665543221222223445555555555555555444332 334444555555554444
No 433
>PRK14127 cell division protein GpsB; Provisional
Probab=36.36 E-value=1.9e+02 Score=23.44 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 180 e~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (300)
..=+++.....+.|...+..|+.++..++.++..+..+....
T Consensus 29 D~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 29 DKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344556666667777777777777777777777777765544
No 434
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=36.35 E-value=73 Score=26.40 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVK 117 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~k 117 (300)
-.+-+.+-++-++|-+++++|.-.+-|+|.++|++.=|+.
T Consensus 84 Pik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~WLDa 123 (135)
T PF15466_consen 84 PIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEEWLDA 123 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999876553
No 435
>PRK14160 heat shock protein GrpE; Provisional
Probab=36.33 E-value=3.3e+02 Score=24.70 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATK 226 (300)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~ 226 (300)
++++.-+........++.-..-+..+..++..+..|+..+..++.++.+++.+.-.+.|-....+-+..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 31 EEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 436
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=36.22 E-value=2.1e+02 Score=22.32 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 189 VVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 189 ~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+.+..+..+.+.+.++..++++...|.
T Consensus 9 e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 9 EIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444
No 437
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=36.22 E-value=1.5e+02 Score=23.44 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=18.3
Q ss_pred HHHHhcCCCC--CcHHHHHHHHHHHHHhHHHH
Q 022272 227 VSEMLGNVNT--SSALSAFEKMEEKVLTMESQ 256 (300)
Q Consensus 227 v~~~~~~~~~--~~a~~~feR~eeki~~~ea~ 256 (300)
+...++.++. ......|+.|-.|...-...
T Consensus 34 lKaGL~eieI~d~eL~~~FeeIa~RFrk~~~~ 65 (92)
T PF07820_consen 34 LKAGLGEIEISDAELQAAFEEIAARFRKGKKK 65 (92)
T ss_pred HHcccccccCCHHHHHHHHHHHHHHHhccccc
Confidence 4455666665 34667777777776655433
No 438
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.20 E-value=4.9e+02 Score=26.58 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 022272 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYA 173 (300)
Q Consensus 94 ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e 173 (300)
++.++||..-. .+.......--.+++.+.....+++-...+++ ...++..++..++.-|..-||+-- .......
T Consensus 233 ~eel~eq~een----eel~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~-~~l~~~~ 306 (521)
T KOG1937|consen 233 VEELTEQNEEN----EELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLM-GKLAELN 306 (521)
T ss_pred HHHHHhhhhhH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHH-HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------H-HHHHHHHHHHHHHHHHHHH
Q 022272 174 DNANALKAQLDQQKNVVNNLVSNTRLL---------E-SKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 174 ~~~~~le~ql~~~~~~v~~L~~~l~~L---------e-~ki~e~k~k~~~LkAr~~~ 220 (300)
.++..+.++|+.......+=+..+++. + .+|++++..+..+..+.+.
T Consensus 307 ~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~ 363 (521)
T KOG1937|consen 307 KQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIES 363 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
No 439
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=36.12 E-value=3.5e+02 Score=24.91 Aligned_cols=23 Identities=4% Similarity=0.183 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQ 124 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~ 124 (300)
.+|+.-=..+...+..+...-.+
T Consensus 32 ~~l~eR~~~I~~~l~~Ae~~~~e 54 (250)
T PRK14474 32 QVMKKRQQRIANRWQDAEQRQQE 54 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 440
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=35.94 E-value=2.2e+02 Score=22.58 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ---ASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (300)
Q Consensus 109 reme~~l~kar~alA~v~A~~k~le~k~~~~~~---~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~ 185 (300)
..+.+.+..+...+..+.......+.=++++.. ...=|..=-..-+....++.-...-.+ ++.++..+..
T Consensus 13 q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r-------~e~ie~~i~~ 85 (110)
T TIGR02338 13 QQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEK-------KETLELRVKT 85 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHH-------HHHHHHHHHH
Confidence 344444444444444444444444443333333 222233333344555555554444333 3333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022272 186 QKNVVNNLVSNTRLLESKIQE 206 (300)
Q Consensus 186 ~~~~v~~L~~~l~~Le~ki~e 206 (300)
.+.....++..+.+++.+|++
T Consensus 86 lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 86 LQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445544444
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=35.81 E-value=3.9e+02 Score=29.88 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCK 137 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~ 137 (300)
|+--+.|.-..|-+....+|++++.++.+++++-
T Consensus 874 ln~p~ed~~~~l~~qQe~~a~l~~sQ~el~~~l~ 907 (1283)
T KOG1916|consen 874 LNHPMEDLLPQLLAQQETMAQLMASQKELQRQLS 907 (1283)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333344555566667778888888888887763
No 442
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.65 E-value=3.5e+02 Score=24.79 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 116 VKMRQATAQVLASQKRLENKCKAAEQASE 144 (300)
Q Consensus 116 ~kar~alA~v~A~~k~le~k~~~~~~~i~ 144 (300)
.+.+..+-..+..-...+.-+.++..+++
T Consensus 14 ek~k~~i~~e~~~~e~ee~~L~e~~kE~~ 42 (230)
T PF10146_consen 14 EKLKNEILQEVESLENEEKCLEEYRKEME 42 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444433
No 443
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.44 E-value=1.7e+02 Score=20.98 Aligned_cols=40 Identities=10% Similarity=0.261 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
..++..+...+..+..++....++...+++++.-...|..
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666666666665555555555544443
No 444
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=35.27 E-value=2.9e+02 Score=23.80 Aligned_cols=49 Identities=16% Similarity=0.024 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 022272 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (300)
Q Consensus 132 le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 180 (300)
+..-..+.+..+..+......|+..++-+-|...+.+..-+.+-...++
T Consensus 111 L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~~L~y~~kl~~~i~ 159 (166)
T PRK01356 111 LEKIKNKYELMYKNEIDSLKQAFEEQNLSDATIKTSKLKYIGTLLNKLQ 159 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666667777788888999999999998888777766555444
No 445
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=35.14 E-value=3e+02 Score=23.83 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (300)
..+..+-..+..+.-.+.-++.+-..++.+++.|.-|..
T Consensus 77 ~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~ 115 (159)
T PF05384_consen 77 EDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLR 115 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555544433
No 446
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=34.97 E-value=3.1e+02 Score=23.95 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (300)
||+-+++ |.|..++|.++..+-. +.+--.+.+..+.+|.++...|....+-+-|...+.+..........
T Consensus 94 Dpe~Lme--vle~~E~IS~~~De~~--------l~~lk~q~q~ri~q~~~qlge~~esk~~~~Al~~i~rlrY~~~~~k~ 163 (168)
T KOG3192|consen 94 DPEFLME--VLEYHEAISEMDDEED--------LKQLKSQNQERIAQCKQQLGEAFESKKYDEALKKILRLRYWYELRKN 163 (168)
T ss_pred CHHHHHH--HHHHHHHHHhccCcHH--------HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 8876665 6678888888877654 23344556778889999999999999999999999888777655444
Q ss_pred H
Q 022272 179 L 179 (300)
Q Consensus 179 l 179 (300)
+
T Consensus 164 v 164 (168)
T KOG3192|consen 164 V 164 (168)
T ss_pred H
Confidence 3
No 447
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=34.65 E-value=1.1e+02 Score=26.30 Aligned_cols=61 Identities=8% Similarity=0.271 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHH
Q 022272 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADS 259 (300)
Q Consensus 196 ~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~aeA 259 (300)
.+.+|+..|+.++.++..+......|++.-.+.+ +.....+......++.||...+.+..-
T Consensus 12 g~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsE---Naey~aak~~q~~~e~RI~~L~~~L~~ 72 (158)
T PRK05892 12 ARDHLEAELARLRARRDRLAVEVNDRGMIGDHGD---QAEAIQRADELARLDDRINELDRRLRT 72 (158)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcch---hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666555555544444443321111 112345677788888888888877663
No 448
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=34.52 E-value=6.1e+02 Score=27.26 Aligned_cols=108 Identities=16% Similarity=0.255 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 180 (300)
-.+|.|.|-+..++. ...+...--...++++.+......+.....+-..| .+|-...=.++..-...+..+-..|.
T Consensus 498 a~liqqeV~~ArEqg---eaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~A-r~~lqes~eea~~lR~EL~~QQ~~y~ 573 (739)
T PF07111_consen 498 ARLIQQEVGRAREQG---EAERQQLSEVAQQLEQELQEKQESLAELEEQLEAA-RKSLQESTEEAAELRRELTQQQEVYE 573 (739)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555432 23333333344566666666666666665555554 33333333344444455555555555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLD-QQKNVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 181 ~ql~-~~~~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
..++ ........+...+.+++.++.+++++-.
T Consensus 574 ~alqekvsevEsrl~E~L~~~E~rLNeARREHt 606 (739)
T PF07111_consen 574 RALQEKVSEVESRLREQLSEMEKRLNEARREHT 606 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 4555666777778888888887766543
No 449
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.50 E-value=2.9e+02 Score=23.54 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 180 e~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
...++.+++.++.|...+.+++..|+++-.+...+.
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~ 128 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLE 128 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443
No 450
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.46 E-value=3.5e+02 Score=24.38 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Q 022272 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA 162 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLA 162 (300)
+..+.|.++|..++..+.++-..++.+......+....+.....+..|.+-=-..|..|=..||
T Consensus 4 ~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~la 67 (211)
T cd07598 4 NQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFA 67 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999988888776554444554444555
No 451
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=34.45 E-value=2.9e+02 Score=23.53 Aligned_cols=21 Identities=5% Similarity=0.131 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQ 124 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~ 124 (300)
.++...+++..|..++.....
T Consensus 60 Ae~~~~~~e~~L~~A~~ea~~ 80 (167)
T PRK14475 60 AQALLADVKAEREEAERQAAA 80 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 452
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=34.40 E-value=3.4e+02 Score=24.33 Aligned_cols=90 Identities=8% Similarity=0.111 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 022272 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL- 200 (300)
Q Consensus 122 lA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~L- 200 (300)
+-.++..+...-..+..++..+.+...+...-...|+.|-.-.+-.+....+......+..++... ..++..+..+
T Consensus 111 vk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is---~~~k~El~rF~ 187 (224)
T cd07623 111 IKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEIS---KTIKKEIERFE 187 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 334444566666666666666666666654445567665444444444444444444444333332 2233333333
Q ss_pred HHHHHHHHHHHHHH
Q 022272 201 ESKIQEARSKKDTL 214 (300)
Q Consensus 201 e~ki~e~k~k~~~L 214 (300)
..++.+++.-...+
T Consensus 188 ~erv~dfk~~l~~~ 201 (224)
T cd07623 188 KNRVKDFKDIIIKY 201 (224)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555544443
No 453
>PRK11820 hypothetical protein; Provisional
Probab=34.37 E-value=4.1e+02 Score=25.17 Aligned_cols=141 Identities=24% Similarity=0.284 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH----------------HHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL----------------AREA 165 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdL----------------AreA 165 (300)
..+...+.++=+.+.++|..=...+ +.-+..+++.++..+...+..+-..+..-++-| +.++
T Consensus 129 ~~l~~al~~AL~~l~~~R~~EG~~L--~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~qEv 206 (288)
T PRK11820 129 AALLAALDEALDDLIEMREREGAAL--KADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLGELDENRLEQEV 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 5677777777788888877755544 334455555555555555555444444433322 2222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHH
Q 022272 166 --LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAF 243 (300)
Q Consensus 166 --L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~f 243 (300)
+..|.+..+.+..|...++++...+..=..-=++|.-=++|+-++.+++-+..+.+....-+ =+.-..+
T Consensus 207 al~adK~DI~EEi~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEm~RE~NTigSKs~~~~is~~v---------Ve~K~el 277 (288)
T PRK11820 207 ALLAQKADIAEELDRLKSHLKEFREILKKGGPVGRKLDFLMQELNREANTLGSKSNDAEITNLV---------VELKVLI 277 (288)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHhHHHHHHHHccCcHHHHHHH---------HHHHHHH
Confidence 12222223333333333333222222111011234455566666666666554443322111 1345688
Q ss_pred HHHHHHHHhH
Q 022272 244 EKMEEKVLTM 253 (300)
Q Consensus 244 eR~eeki~~~ 253 (300)
|+|+|+|.-.
T Consensus 278 EkiREQVQNI 287 (288)
T PRK11820 278 EQMREQVQNI 287 (288)
T ss_pred HHHHHHHhcC
Confidence 9999988643
No 454
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=34.22 E-value=5.5e+02 Score=26.63 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCC
Q 022272 280 VDDDLANLKKELSGSSKDFFL 300 (300)
Q Consensus 280 vddeLarLKa~l~~~~~~~~~ 300 (300)
+...|.+|.++--.+-+.||+
T Consensus 440 ~~s~L~rL~re~yls~~~f~~ 460 (596)
T KOG4360|consen 440 LGSALQRLSRENYLSEGSFFL 460 (596)
T ss_pred HHHHHHHHHHHhhcccccccc
Confidence 456677777443334444553
No 455
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=34.15 E-value=3.4e+02 Score=24.15 Aligned_cols=8 Identities=13% Similarity=0.356 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 022272 206 EARSKKDT 213 (300)
Q Consensus 206 e~k~k~~~ 213 (300)
..+++.+.
T Consensus 148 aAk~Rve~ 155 (188)
T PF05335_consen 148 AAKRRVEE 155 (188)
T ss_pred HHHHHHHH
Confidence 33333333
No 456
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.11 E-value=1.7e+02 Score=21.11 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (300)
Q Consensus 175 ~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (300)
....+..++...+.++++++.....|+.+++.++.-.+.+.--++
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
No 457
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=34.04 E-value=1.5e+02 Score=23.14 Aligned_cols=33 Identities=12% Similarity=0.292 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
++.+.+++...+..+++....+..|+++...+.
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666554
No 458
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=33.98 E-value=6.3e+02 Score=27.26 Aligned_cols=30 Identities=3% Similarity=0.139 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 116 VKMRQATAQVLASQKRLENKCKAAEQASED 145 (300)
Q Consensus 116 ~kar~alA~v~A~~k~le~k~~~~~~~i~~ 145 (300)
-++-..+..+..+...++.++......+..
T Consensus 66 Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~ 95 (766)
T PF10191_consen 66 PRVLREVDRLRQEAASLQEQMASVQEEIKA 95 (766)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444444444444444444433
No 459
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.83 E-value=3.2e+02 Score=23.90 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHcCc----HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 154 LQKGE----EDLAREALKRRKSYADNANALKAQLD------------QQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 154 L~~G~----EdLAreAL~rk~~~e~~~~~le~ql~------------~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
...|+ +.++. ...+...++.++..++..++ +....++.+...|..|+.+|.+.+.
T Consensus 76 ~~~G~~t~~~R~~l-Le~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 76 NTIVQNISSVDFEQ-LEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHcCCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
No 460
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=33.56 E-value=2.5e+02 Score=22.71 Aligned_cols=50 Identities=8% Similarity=0.191 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 84 RVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLE 133 (300)
Q Consensus 84 ~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le 133 (300)
+++.|.-|.....+-|.+..+.-.+.|++-.+..++.-+..++...+..+
T Consensus 37 ~vi~G~n~~l~k~L~eki~~Fh~ILDd~~~~l~~sk~~v~~m~e~~q~~e 86 (105)
T PF11214_consen 37 NVITGFNNQLQKQLSEKIHKFHSILDDTESKLNDSKWYVDTMVELKQKQE 86 (105)
T ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556665566677788888889999999999999988888766655
No 461
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=33.44 E-value=3.4e+02 Score=23.93 Aligned_cols=94 Identities=21% Similarity=0.301 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HcCc----HHHHHHHHHHHHHHHHHHHH----
Q 022272 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA-------L-QKGE----EDLAREALKRRKSYADNANA---- 178 (300)
Q Consensus 115 l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A-------L-~~G~----EdLAreAL~rk~~~e~~~~~---- 178 (300)
+.+..+..|.+| ..|+.++.++.....+++.+...- . ...+ .|| .+++.+...-......
T Consensus 7 ~qe~Qq~qa~Lv---~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dL-e~~l~rLeEEqqR~~~L~qv 82 (182)
T PF15035_consen 7 YQEEQQRQAQLV---QRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDL-EEALIRLEEEQQRSEELAQV 82 (182)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccH-HHHHHHHHHHHHhHHHHHHH
Confidence 334444444444 346677777777777777776211 0 0001 122 2244444444444444
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 179 ---LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 179 ---le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
|..++++....-+.|..++.++......++.++.
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777777666555544
No 462
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=33.44 E-value=3.8e+02 Score=24.53 Aligned_cols=125 Identities=10% Similarity=0.097 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022272 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G 157 (300)
+..|+..+..-..+.-.-.+++| |+-|||.+ .++-.++..+..+=+.+..++..+.+...+-......|
T Consensus 88 v~~ki~~~~~~qa~~d~~~l~e~---L~eYiR~i--------~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~ 156 (234)
T cd07664 88 VEEKIDQLHQDQAFADFYLFSEL---LGDYIRLI--------AAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYAN 156 (234)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhh---HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+.|-..++-.+....+......+..++.....+..=-.... +.++.+++.-...+.
T Consensus 157 k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe--~er~~dfk~~l~~fl 212 (234)
T cd07664 157 KPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFE--KERVKDFKTVIIKYL 212 (234)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
No 463
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=33.34 E-value=3.8e+02 Score=24.52 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCcHH
Q 022272 109 LEMNDDLVKMRQATAQVLASQKRLENKC-KAAEQASEDWYRKAQLALQKGEED 160 (300)
Q Consensus 109 reme~~l~kar~alA~v~A~~k~le~k~-~~~~~~i~~~e~rA~~AL~~G~Ed 160 (300)
.+.+..|.+++...+.+++..+....++ +++..+..+|...+..-+..++++
T Consensus 40 ~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~e 92 (255)
T TIGR03825 40 QEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQE 92 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556667776666666655444443 345555666666666555555543
No 464
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=33.33 E-value=7e+02 Score=27.57 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHc
Q 022272 279 SVDDDLANLKKEL 291 (300)
Q Consensus 279 ~vddeLarLKa~l 291 (300)
.|+.+++-||+..
T Consensus 480 KVeqe~emlKaen 492 (1265)
T KOG0976|consen 480 KVEQEYEMLKAEN 492 (1265)
T ss_pred chHHHHHHHHHHH
Confidence 4555555555543
No 465
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=33.29 E-value=1.1e+02 Score=21.77 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLE 201 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le 201 (300)
.+..+++..-.+..+....++.|+..|.++|
T Consensus 21 ~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE 51 (53)
T PF08898_consen 21 ALAAQAEQQLAEAGDIAAALEKLKAEIAKLE 51 (53)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444555444444444
No 466
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=33.25 E-value=7.3e+02 Score=27.77 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (300)
Q Consensus 111 me~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL 154 (300)
+...+..++..+..+-+....+...+.............-..+|
T Consensus 715 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 758 (1047)
T PRK10246 715 ALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTAL 758 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555444444443
No 467
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=33.22 E-value=3.1e+02 Score=23.51 Aligned_cols=50 Identities=12% Similarity=0.176 Sum_probs=26.8
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 99 DP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
.| ..+|++--....++|..+...-.++-......+.++...+.+..+.-.
T Consensus 27 kPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~ 77 (154)
T PRK06568 27 KAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIE 77 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 366666666666666666665554444444444455444444444333
No 468
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=33.17 E-value=2.3e+02 Score=21.86 Aligned_cols=43 Identities=28% Similarity=0.279 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 139 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (300)
Q Consensus 139 ~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ 181 (300)
+++.+++|..-|+.|+..||--+|.-.++--.-|...+...+.
T Consensus 35 A~ql~EKY~~LArDA~ssGDrV~aEny~QHAeHY~Ril~~~~~ 77 (80)
T PF13763_consen 35 AQQLIEKYNQLARDAQSSGDRVLAENYLQHAEHYFRILAAAQA 77 (80)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999998888776666665555443
No 469
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.96 E-value=5.5e+02 Score=26.25 Aligned_cols=91 Identities=14% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCcHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 022272 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED---WYRKAQLALQKGEEDLAREALKRRKSY--ADNANALKAQL 183 (300)
Q Consensus 109 reme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~---~e~rA~~AL~~G~EdLAreAL~rk~~~--e~~~~~le~ql 183 (300)
+...+.+...+.....+.+....++.+++..+...++ +-..++..|..-=+.||-++++++..- +..-+.++..+
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll 142 (475)
T PRK10361 63 ELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLL 142 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333222221 223344445555578888888876542 22223333333
Q ss_pred HHHHHHHHHHHHHHHH
Q 022272 184 DQQKNVVNNLVSNTRL 199 (300)
Q Consensus 184 ~~~~~~v~~L~~~l~~ 199 (300)
.-+.++++.++..+.+
T Consensus 143 ~Pl~e~l~~f~~~v~~ 158 (475)
T PRK10361 143 SPLREQLDGFRRQVQD 158 (475)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3344444444444333
No 470
>PHA02047 phage lambda Rz1-like protein
Probab=32.86 E-value=2.6e+02 Score=22.40 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 175 NANALKAQLDQQKNVVNNLVSNTRLLESK 203 (300)
Q Consensus 175 ~~~~le~ql~~~~~~v~~L~~~l~~Le~k 203 (300)
.++.+.++++..+.++..+..++..++.+
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 471
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=32.75 E-value=4.5e+02 Score=25.16 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 105 eQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~r 149 (300)
.-.+.|+++.+.+|..+-|++=-++..+.-+++-+...+.+++..
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~ 127 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEET 127 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888888887777777777777777777776666554
No 472
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=32.62 E-value=2.8e+02 Score=22.75 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 118 MRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (300)
Q Consensus 118 ar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~ 194 (300)
+...++.+..+++.++.+...+......+..+...=+. --+-...+|.+.=++++.+..++..+......+....
T Consensus 38 ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~--~~~~~~~~LKEiGDveNWa~~iE~Dl~~i~~~L~~v~ 112 (121)
T PF06320_consen 38 LNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLK--LVDSFNDALKEIGDVENWAEMIERDLRVIEETLRYVY 112 (121)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888888888888888888777777665333 2233456777888888888888887776666665443
No 473
>PRK10780 periplasmic chaperone; Provisional
Probab=32.61 E-value=3.1e+02 Score=23.30 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=6.7
Q ss_pred cCCHHHHHHH
Q 022272 97 FEDPEKILEQ 106 (300)
Q Consensus 97 ~EDP~~mLeQ 106 (300)
+.|+.+++.+
T Consensus 28 ~Vd~q~il~~ 37 (165)
T PRK10780 28 IVNMGSIFQQ 37 (165)
T ss_pred EeeHHHHHHH
Confidence 4588777764
No 474
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.41 E-value=2.7e+02 Score=22.59 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (300)
.++-+.+..++.++...-..+..|+..+..+-..=..++-+-+.|+.+..
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666555555555444
No 475
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=32.40 E-value=71 Score=23.15 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 187 KNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 187 ~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
.+.++-|+..|.+|+.++.+++.+=..|+.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778888888888888888888777775
No 476
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=32.11 E-value=5e+02 Score=25.50 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHH
Q 022272 76 MNLFDRLARVVKSYANAILSSFEDPEKIL 104 (300)
Q Consensus 76 Msif~Rl~~li~a~~n~~ld~~EDP~~mL 104 (300)
++||.+|..+.. ...++-..+.||+.+-
T Consensus 3 ~~~~~kl~~~~~-r~~el~~~L~~p~v~~ 30 (363)
T COG0216 3 PSLLEKLESLLE-RYEELEALLSDPEVIS 30 (363)
T ss_pred chHHHHHHHHHH-HHHHHHHHhcCccccc
Confidence 467888877665 5555656666775433
No 477
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=32.03 E-value=1.7e+02 Score=25.52 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 174 ~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
++.+.|+.+|.+.+..|..|+.-|..-+....++++++
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34456666677777777777776666666666776664
No 478
>PLN02939 transferase, transferring glycosyl groups
Probab=32.03 E-value=7.7e+02 Score=27.64 Aligned_cols=130 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--HHcCcHHHHHH
Q 022272 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKR-LENKCKAAEQASEDWYRKAQLA--LQKGEEDLARE 164 (300)
Q Consensus 88 a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~-le~k~~~~~~~i~~~e~rA~~A--L~~G~EdLAre 164 (300)
+.+.+.+-.+|-....|+-.++|++..+..+...+..+...+-. +-.+++.++...+...+++..| +-.++.||-+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (977)
T PLN02939 253 AETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDK 332 (977)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q ss_pred HHHHHHHHH------------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 165 ALKRRKSYA------------DNA-NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 165 AL~rk~~~e------------~~~-~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
.=.-...++ +.. +.++..-+.+.....++..+++--+..+++++..+..|+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (977)
T PLN02939 333 VDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398 (977)
T ss_pred HHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 479
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=32.02 E-value=2.2e+02 Score=21.29 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 143 SEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 143 i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
+.+|+.+-.-|+.. |=...-.+....+.....++..+.........|..++..|..++..+-.+.+.|
T Consensus 1 MteLE~qLl~ale~----Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 1 MTELEKQLLSALEE----LQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred CcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 480
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=31.97 E-value=3.4e+02 Score=23.48 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLAS----------------QKRLENKCKA 138 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP~---~mLeQ~Ireme~~l~kar~alA~v~A~----------------~k~le~k~~~ 138 (300)
++..+..++..+-+.+.+.+++.+ .-.+....+.+..+.+++.....++.. ....++.++.
T Consensus 48 ~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~ 127 (184)
T PRK13455 48 VPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAA 127 (184)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 139 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNN 192 (300)
Q Consensus 139 ~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~ 192 (300)
.+..+..-..+|...++.-=-++|..+..+...-.-.-+....-++..-..+..
T Consensus 128 A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~lid~~i~~l~~ 181 (184)
T PRK13455 128 AEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAKQMTAADANALIDEAIKEVEA 181 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
No 481
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=31.94 E-value=2.5e+02 Score=21.91 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 182 ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (300)
+++++..+|..|...+.++...+..++......+.....|
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RA 64 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRA 64 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.91 E-value=2e+02 Score=20.78 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 022272 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL---ESKIQEARSKK 211 (300)
Q Consensus 166 L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~L---e~ki~e~k~k~ 211 (300)
..+......++..++.++++.+...+.|+..+..+ ..-|++.-+++
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~ 64 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREK 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
No 483
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=31.88 E-value=1.7e+02 Score=22.60 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 175 ~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
.+..+...++.....+..+...++.|+.++.++++
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.74 E-value=3.3e+02 Score=23.35 Aligned_cols=110 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~ 189 (300)
+....+.+....+...-.+-..++....+......+..+.=.... .........+..++..+......
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~l~~l~~~~~~~~~e 145 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR------------ELLKSVEERLDSLDESIKELEKE 145 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022272 190 VNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEML 231 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~ 231 (300)
...+...+.+.+..+++.+.....+....+...-..+-...+
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 146 IRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.57 E-value=2.2e+02 Score=22.57 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
..++-..-++..++.....++.+...+..+..++.+++.....+
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 486
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=31.55 E-value=2.3e+02 Score=21.39 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 140 EQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL----KAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (300)
Q Consensus 140 ~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l----e~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k 210 (300)
..-+++...++..++..+..--.----.=+..++..+..+ ..+.+-+...+.+++..+..|+.++.+++.+
T Consensus 5 ~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 5 NKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 487
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.54 E-value=6.3e+02 Score=26.46 Aligned_cols=162 Identities=14% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Q 022272 82 LARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL 161 (300)
Q Consensus 82 l~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdL 161 (300)
|++++--.-+..++..+|-..+-+ |.+.-+.+.-..++. +++.++.....++++.. ..-.++=
T Consensus 197 f~dy~~~~Y~~fl~g~d~~~~~~~----Elk~~l~~~~~~i~~----------~ie~l~~~n~~l~e~i~---e~ek~~~ 259 (581)
T KOG0995|consen 197 FFDYTIRSYTSFLKGEDNSSELED----ELKHRLEKYFTSIAN----------EIEDLKKTNRELEEMIN---EREKDPG 259 (581)
T ss_pred HHHHHHHHHHHHhccCcccchHHH----HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH---HHhcCcc
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH
Q 022272 162 AREALKRRKS-YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSAL 240 (300)
Q Consensus 162 AreAL~rk~~-~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~ 240 (300)
..+.|.++.. +++.+..+++-+.+.+..-..+...+..+...|++...+.+.|+.....-+.+...+ .+++-+.....
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn 338 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-GISGEDVERMN 338 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHhh
Q 022272 241 SAFEKMEEKVLTMESQADSLN 261 (300)
Q Consensus 241 ~~feR~eeki~~~ea~aeA~~ 261 (300)
..-+.+..-++.+.-+.+...
T Consensus 339 ~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 339 LERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 488
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=31.22 E-value=3.4e+02 Score=23.25 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP~---~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL 154 (300)
+|+-|.+++..+-+.+.+.+++.+ .-.+....+++..|.+++.....++...+.-..+. .+..+.+-+..+..-+
T Consensus 40 l~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~--~~~~~~~A~~e~~~~~ 117 (174)
T PRK07352 40 GRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAI--RAEIEKQAIEDMARLK 117 (174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (300)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~le~ql~~ 185 (300)
...+.++..+--.-..++..++..+--+...
T Consensus 118 ~~a~~~i~~e~~~a~~~l~~qi~~la~~~A~ 148 (174)
T PRK07352 118 QTAAADLSAEQERVIAQLRREAAELAIAKAE 148 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.18 E-value=2.6e+02 Score=21.84 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 163 REALKRRKSYADNANALKAQLDQQKNV---VNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 163 reAL~rk~~~e~~~~~le~ql~~~~~~---v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (300)
|.+..+...+..+...+..++.+.... .+.|......++.+|.+++.+...+......
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PRK01203 prefoldin subunit alpha; Provisional
Probab=31.07 E-value=1.8e+02 Score=24.37 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (300)
Q Consensus 162 AreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ 202 (300)
|++...+...++.+++.|+++++.++....++...+..++.
T Consensus 2 ~~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 2 ARDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 491
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=31.06 E-value=4.1e+02 Score=24.23 Aligned_cols=125 Identities=22% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Q 022272 79 FDRLARVVKSYANAILSSFEDP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKC-KAAEQASEDWYRKAQLALQK 156 (300)
Q Consensus 79 f~Rl~~li~a~~n~~ld~~EDP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~-~~~~~~i~~~e~rA~~AL~~ 156 (300)
..||..+-......+-..+-+| ...++..|.++...-.++...-=..=+.++++.... ++++...++++.....|...
T Consensus 97 ~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~k~~eeelr~a~ekFees~E~a~~~ 176 (223)
T cd07614 97 MKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAMEKFEESKEVAETS 176 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHH
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 157 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 157 G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
=..-+..++ ..+..-..=+++|++-++...+-|..-..+|..+|.++
T Consensus 177 M~~il~~e~----e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~~~~~~~ 223 (223)
T cd07614 177 MHNLLETDI----EQVSQLSALVDAQLDYHRQAVQILDELAEKLKRRMREA 223 (223)
T ss_pred HHHHHhCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 492
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=31.04 E-value=5.4e+02 Score=25.55 Aligned_cols=109 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 022272 146 WYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA------- 218 (300)
Q Consensus 146 ~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~------- 218 (300)
|..+-......-...|.-+.-.-..........++.++.++...+..++..+.++..++..++.+...+..+.
T Consensus 57 ~~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLa 136 (390)
T PRK10920 57 HGKQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLA 136 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHH
Q ss_pred -HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHH
Q 022272 219 -QSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTME 254 (300)
Q Consensus 219 -~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~e 254 (300)
.--=..-......-.-|+.+|...|+-..+++.++.
T Consensus 137 EaeyLlrlA~qkL~l~~Dv~tA~alLksAD~rLa~~~ 173 (390)
T PRK10920 137 QADFLVKLAGRKLWSDQDVTTAAALLKSADASLADMN 173 (390)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
No 493
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=30.91 E-value=1.4e+02 Score=25.59 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHH
Q 022272 194 VSNTRLLESKIQEARS-KKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQAD 258 (300)
Q Consensus 194 ~~~l~~Le~ki~e~k~-k~~~LkAr~~~Akaq~~v~~~~~~~~~~~a~~~feR~eeki~~~ea~ae 258 (300)
...+.+|+..|+.++. ++..+......|+++-.+.+ +.....|......++.||..++.+..
T Consensus 9 ~~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~E---NaeY~aAk~~~~~~e~rI~~L~~~L~ 71 (157)
T PRK01885 9 REGYARLKQELDYLWREERPEVTQKVSWAASLGDRSE---NADYIYGKKRLREIDRRVRFLTKRLE 71 (157)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcch---hhcHHHHHHHHHHHHHHHHHHHHHHc
No 494
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=30.62 E-value=7.4e+02 Score=26.99 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 022272 86 VKSYANAILSSFEDPEKILEQAVLEMND----------DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL--- 152 (300)
Q Consensus 86 i~a~~n~~ld~~EDP~~mLeQ~Ireme~----------~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~--- 152 (300)
+...++.++.++.|=...|++.+..+.+ -+.+....+-.++.....+.. ..............
T Consensus 500 ~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD----v~s~~sEIK~~f~~~ss 575 (769)
T PF05911_consen 500 ISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD----VSSMRSEIKKNFDGDSS 575 (769)
T ss_pred hcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH----HHHHHHHHHHhhhhccc
Q ss_pred ------HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 153 ------ALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATK 226 (300)
Q Consensus 153 ------AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~ 226 (300)
........--..-..+...++.....++..+......++.++.++.+++.+|.+++.++..++-....+..+..
T Consensus 576 ~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~ 655 (769)
T PF05911_consen 576 SEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLK 655 (769)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhcCCC---CCcHHHHHHHHHHHHHhHHHHHH
Q 022272 227 VSEMLGNVN---TSSALSAFEKMEEKVLTMESQAD 258 (300)
Q Consensus 227 v~~~~~~~~---~~~a~~~feR~eeki~~~ea~ae 258 (300)
........- ...+...+..+..+|..++.+.+
T Consensus 656 ~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 656 AMKESYESLETRLKDLEAEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
No 495
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.56 E-value=4.5e+02 Score=24.47 Aligned_cols=129 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH
Q 022272 79 FDRLARVVKSYANAILSSFEDP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRL----------------ENKCKAAEQ 141 (300)
Q Consensus 79 f~Rl~~li~a~~n~~ld~~EDP-~~mLeQ~Ireme~~l~kar~alA~v~A~~k~l----------------e~k~~~~~~ 141 (300)
++||.......-..+-..+-+| ..+++--|.++...-.++....-+.=+.+.++ .-+.++++.
T Consensus 90 ~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~ 169 (248)
T cd07619 90 EDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALRE 169 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHH
Q ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 142 ASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 142 ~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
++++.+++-..+-..--+++---.-.......--+.=++.|++-.+...+-|..-+..++..++.+
T Consensus 170 e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~~~ 235 (248)
T cd07619 170 EMEEAANRMEICRDQLSADMYSFVAKEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQEAW 235 (248)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 496
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=30.45 E-value=6.5e+02 Score=26.33 Aligned_cols=145 Identities=13% Similarity=0.190 Sum_probs=0.0
Q ss_pred cCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 75 RMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (300)
Q Consensus 75 ~Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL 154 (300)
.+.++.|+..=+.......-...+... +...+.+++..+......+..+......++.++++++..+.+++..-..
T Consensus 180 Gl~~~~~L~~dl~~~~~~~~~~~~~~~--~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~-- 255 (650)
T TIGR03185 180 GLDLIDRLAGDLTNVLRRRKKSELPSS--ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS-- 255 (650)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 155 QKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT---RLLESKIQEARSKKDTLKARAQSAKTATKVSE 229 (300)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l---~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~ 229 (300)
.....+.++..++.++..++.++.+....+.++-... --+..-+.+++.+.....-..+..-....+.+
T Consensus 256 ------~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~~~~~~~~~l~~ 327 (650)
T TIGR03185 256 ------EGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEE 327 (650)
T ss_pred ------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK06798 fliD flagellar capping protein; Validated
Probab=30.45 E-value=3.3e+02 Score=27.37 Aligned_cols=69 Identities=9% Similarity=0.118 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 77 sif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~r 149 (300)
||..||.+++...++ .-.-+..-..-|+..|..+++.+......+. ..+.++.+++..++..+.++..+
T Consensus 358 Gia~~l~~~l~~~~~-~~G~i~~r~~~l~~~i~~l~~~~~~~e~rl~---~~e~~l~~qf~ale~~ms~lnsQ 426 (440)
T PRK06798 358 GLGKEMEKSLDKIFG-DEGIIGERSKSIDNRVSKLDLKITDIDTQNK---QKQDNIVDKYQKLESTLAALDSQ 426 (440)
T ss_pred cHHHHHHHHHHhhhC-CCceeehhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=30.40 E-value=2e+02 Score=20.39 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 164 eAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
.|-.-...-...+..|+..+..+......|...+..|+..+..++.+..
T Consensus 16 AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 499
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=30.26 E-value=4.9e+02 Score=24.85 Aligned_cols=150 Identities=11% Similarity=0.010 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANA-ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLA---------SQKRLENKCKAAEQASEDWY 147 (300)
Q Consensus 78 if~Rl~~li~a~~n~-~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A---------~~k~le~k~~~~~~~i~~~e 147 (300)
|-..+.+....++|. --....+-..-+++.+.++++.+.+++..+..... ........+.+++.+..+.+
T Consensus 148 ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~ 227 (362)
T TIGR01010 148 INQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQ 227 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 148 RKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN----VVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (300)
Q Consensus 148 ~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~----~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Aka 223 (300)
.+-......+.++ .=....-+.+....-..+..+..+... ........+..|+...+-.+...+.+..+.+.++.
T Consensus 228 ~~l~~l~~~~~~~-~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~ 306 (362)
T TIGR01010 228 AQLAQLRSITPEQ-NPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRV 306 (362)
T ss_pred HHHHHHHhhCCCC-CCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 022272 224 ATKVS 228 (300)
Q Consensus 224 q~~v~ 228 (300)
....+
T Consensus 307 ~~~~~ 311 (362)
T TIGR01010 307 EADRQ 311 (362)
T ss_pred HHHhh
No 500
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=29.92 E-value=1.3e+02 Score=28.20 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 166 L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
|.|+..+++.+..++.....+...+..|+..+.+++.++.+.
T Consensus 226 LdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 226 LDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Done!