Query 022272
Match_columns 300
No_of_seqs 160 out of 807
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:43:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq9_A Bone marrow stromal ant 97.1 0.035 1.2E-06 53.6 19.5 121 78-214 349-469 (471)
2 4abm_A Charged multivesicular 97.1 0.0081 2.8E-07 45.0 11.5 74 119-193 5-78 (79)
3 3na7_A HP0958; flagellar bioge 96.5 0.37 1.3E-05 43.2 19.8 144 102-249 35-187 (256)
4 2fxo_A Myosin heavy chain, car 96.3 0.34 1.2E-05 39.1 17.5 112 104-215 11-124 (129)
5 3na7_A HP0958; flagellar bioge 95.8 0.96 3.3E-05 40.4 21.2 120 88-217 14-133 (256)
6 2gd5_A Charged multivesicular 95.7 0.053 1.8E-06 46.3 9.1 40 130-169 24-67 (179)
7 3oja_B Anopheles plasmodium-re 95.6 0.45 1.5E-05 46.9 17.0 40 111-150 454-493 (597)
8 3vkg_A Dynein heavy chain, cyt 94.3 4.6 0.00016 48.1 22.7 83 171-258 2018-2101(3245)
9 1i84_S Smooth muscle myosin he 94.1 0.32 1.1E-05 52.7 12.2 108 106-214 857-967 (1184)
10 3o0z_A RHO-associated protein 93.5 3.1 0.0001 35.2 16.6 115 98-224 5-119 (168)
11 3frt_A Charged multivesicular 93.5 0.63 2.1E-05 41.1 10.8 81 128-233 22-102 (218)
12 1i84_S Smooth muscle myosin he 93.4 0.45 1.5E-05 51.6 11.7 42 112-153 856-897 (1184)
13 3oja_B Anopheles plasmodium-re 93.1 2.2 7.5E-05 41.9 15.5 28 188-215 537-564 (597)
14 1c1g_A Tropomyosin; contractIl 92.5 4.4 0.00015 34.3 21.6 47 102-148 100-146 (284)
15 3vkg_A Dynein heavy chain, cyt 92.2 11 0.00038 45.0 21.5 59 163-221 1990-2054(3245)
16 3bas_A Myosin heavy chain, str 91.0 4 0.00014 30.7 12.4 46 104-149 12-57 (89)
17 3ghg_A Fibrinogen alpha chain; 90.8 2.7 9.1E-05 41.5 12.3 98 106-212 57-155 (562)
18 3ajw_A Flagellar FLIJ protein; 90.8 5.4 0.00018 31.9 13.1 100 109-214 15-114 (150)
19 2efr_A General control protein 89.0 9 0.00031 31.9 19.7 102 98-212 14-115 (155)
20 1deq_A Fibrinogen (alpha chain 88.1 8.4 0.00029 36.5 13.2 65 98-162 105-169 (390)
21 3u59_A Tropomyosin beta chain; 87.9 7.6 0.00026 29.7 13.7 22 132-153 7-28 (101)
22 3mq9_A Bone marrow stromal ant 87.7 9.9 0.00034 36.2 14.1 45 173-220 424-468 (471)
23 3u1c_A Tropomyosin alpha-1 cha 87.3 8.4 0.00029 29.5 13.7 22 132-153 7-28 (101)
24 2v4h_A NF-kappa-B essential mo 86.8 9.8 0.00034 29.8 11.7 82 107-211 25-106 (110)
25 3ol1_A Vimentin; structural ge 86.6 10 0.00036 29.9 15.2 91 101-217 15-105 (119)
26 2v71_A Nuclear distribution pr 86.1 15 0.00053 31.4 20.0 111 102-216 13-123 (189)
27 1m1j_B Fibrinogen beta chain; 86.0 27 0.00091 34.0 16.2 21 103-123 97-117 (464)
28 4fm3_A Uncharacterized hypothe 85.4 11 0.00037 29.0 10.6 64 141-205 32-95 (98)
29 3oja_A Leucine-rich immune mol 85.1 27 0.00092 33.3 17.8 41 118-158 358-398 (487)
30 3mq7_A Bone marrow stromal ant 85.1 13 0.00043 29.5 13.7 82 130-219 28-109 (121)
31 2jee_A YIIU; FTSZ, septum, coi 85.0 7.8 0.00027 28.8 9.0 66 87-156 12-77 (81)
32 1m1j_C Fibrinogen gamma chain; 85.0 15 0.0005 35.3 13.4 51 166-216 83-133 (409)
33 3mq7_A Bone marrow stromal ant 83.8 15 0.0005 29.2 13.6 40 168-207 72-111 (121)
34 3s4r_A Vimentin; alpha-helix, 83.1 13 0.00044 28.1 11.7 83 114-210 10-92 (93)
35 3ghg_A Fibrinogen alpha chain; 82.9 27 0.00091 34.5 14.3 24 181-204 131-154 (562)
36 1l8d_A DNA double-strand break 82.9 6.4 0.00022 30.2 8.3 39 108-146 5-43 (112)
37 3iox_A AGI/II, PA; alpha helix 82.5 39 0.0013 33.1 16.0 94 110-214 6-99 (497)
38 1deq_A Fibrinogen (alpha chain 81.4 35 0.0012 32.3 14.1 41 171-211 117-157 (390)
39 3efg_A Protein SLYX homolog; x 80.6 6.1 0.00021 29.1 7.0 51 171-221 11-61 (78)
40 2dfs_A Myosin-5A; myosin-V, in 80.2 68 0.0023 34.4 17.8 38 171-208 981-1018(1080)
41 2v71_A Nuclear distribution pr 78.4 31 0.0011 29.5 21.7 116 85-215 14-129 (189)
42 3oja_A Leucine-rich immune mol 77.7 49 0.0017 31.4 14.9 8 78-85 303-310 (487)
43 1jcd_A Major outer membrane li 77.2 15 0.0005 25.0 7.9 27 176-202 6-32 (52)
44 1ic2_A Tropomyosin alpha chain 76.7 19 0.00066 26.2 11.7 22 132-153 4-25 (81)
45 2i1j_A Moesin; FERM, coiled-co 76.2 2.5 8.4E-05 42.3 4.8 25 269-293 504-529 (575)
46 3hnw_A Uncharacterized protein 75.9 30 0.001 28.0 14.2 18 77-94 28-45 (138)
47 2xdj_A Uncharacterized protein 72.9 26 0.00089 26.0 8.8 38 176-213 22-59 (83)
48 3ghg_B Fibrinogen beta chain; 72.8 60 0.002 31.5 13.4 22 104-125 93-114 (461)
49 3ol1_A Vimentin; structural ge 72.4 33 0.0011 26.9 15.5 21 168-188 84-104 (119)
50 3frt_A Charged multivesicular 70.2 20 0.00068 31.4 8.7 81 99-190 7-87 (218)
51 1lwu_C Fibrinogen gamma chain; 69.2 15 0.00051 34.1 8.0 49 169-217 7-55 (323)
52 3m91_A Proteasome-associated A 68.6 24 0.00082 23.8 7.2 42 173-214 8-49 (51)
53 1m1j_B Fibrinogen beta chain; 67.8 92 0.0032 30.2 16.8 46 102-147 103-148 (464)
54 2b9c_A Striated-muscle alpha t 67.6 49 0.0017 27.0 16.4 99 111-214 22-120 (147)
55 2ke4_A CDC42-interacting prote 67.6 39 0.0013 25.8 9.6 47 163-209 38-90 (98)
56 1m1j_C Fibrinogen gamma chain; 67.4 47 0.0016 31.8 11.3 44 165-208 89-132 (409)
57 1gd2_E Transcription factor PA 65.9 12 0.00041 27.0 5.3 31 173-203 35-65 (70)
58 1cii_A Colicin IA; bacteriocin 65.5 1E+02 0.0036 30.0 20.7 75 220-294 449-540 (602)
59 3hfe_A Potassium voltage-gated 65.3 9 0.00031 23.2 3.7 25 236-260 5-29 (31)
60 3hnw_A Uncharacterized protein 64.8 54 0.0018 26.4 11.4 11 102-112 35-45 (138)
61 1m1j_A Fibrinogen alpha subuni 64.4 1.1E+02 0.0037 29.8 14.5 38 172-209 116-153 (491)
62 2efr_A General control protein 64.0 61 0.0021 26.8 22.4 52 96-147 32-83 (155)
63 3a7p_A Autophagy protein 16; c 63.5 61 0.0021 26.8 9.8 47 185-231 100-148 (152)
64 3nmd_A CGMP dependent protein 63.0 28 0.00096 25.2 6.7 33 181-213 33-65 (72)
65 1zbt_A RF-1, peptide chain rel 60.9 33 0.0011 32.5 8.7 32 73-105 10-41 (371)
66 1gmj_A ATPase inhibitor; coile 59.9 46 0.0016 24.8 7.6 28 181-208 51-78 (84)
67 3efg_A Protein SLYX homolog; x 59.6 29 0.00098 25.4 6.5 47 168-214 15-61 (78)
68 1ic2_A Tropomyosin alpha chain 59.1 48 0.0017 24.0 10.4 14 199-212 45-58 (81)
69 4e61_A Protein BIM1; EB1-like 58.5 43 0.0015 26.0 7.6 48 176-223 6-53 (106)
70 2yy0_A C-MYC-binding protein; 57.3 25 0.00084 23.8 5.3 24 192-215 23-46 (53)
71 1lwu_C Fibrinogen gamma chain; 56.9 37 0.0013 31.4 8.3 40 170-209 15-54 (323)
72 3qne_A Seryl-tRNA synthetase, 54.6 80 0.0027 30.8 10.6 30 129-158 42-71 (485)
73 2xdj_A Uncharacterized protein 54.4 63 0.0021 23.9 9.1 30 186-215 25-54 (83)
74 3ghg_C Fibrinogen gamma chain; 53.6 1.4E+02 0.0049 28.4 12.0 43 174-216 91-133 (411)
75 2no2_A HIP-I, huntingtin-inter 52.5 78 0.0027 24.4 15.4 31 110-140 12-42 (107)
76 1gd2_E Transcription factor PA 51.1 33 0.0011 24.6 5.4 41 173-213 28-68 (70)
77 3rkg_A Magnesium transporter M 51.0 1.1E+02 0.0037 27.3 10.2 55 154-208 193-247 (261)
78 3bvo_A CO-chaperone protein HS 50.9 1.2E+02 0.004 25.9 10.3 73 98-180 129-201 (207)
79 2yy0_A C-MYC-binding protein; 50.2 27 0.00094 23.6 4.7 30 175-204 20-49 (53)
80 1fzc_C Fibrin; blood coagulati 50.1 10 0.00034 35.2 3.2 43 166-215 3-45 (319)
81 3swk_A Vimentin; cytoskeleton, 49.7 75 0.0026 23.4 10.9 79 117-214 4-82 (86)
82 3nmd_A CGMP dependent protein 49.4 48 0.0016 24.0 6.0 27 173-199 39-65 (72)
83 3fpp_A Macrolide-specific effl 49.3 40 0.0014 30.2 7.2 20 105-124 68-87 (341)
84 2dq0_A Seryl-tRNA synthetase; 49.2 1.1E+02 0.0038 29.4 10.6 32 127-158 38-69 (455)
85 1t2k_D Cyclic-AMP-dependent tr 49.1 60 0.0021 22.1 6.6 21 193-213 34-54 (61)
86 3m9b_A Proteasome-associated A 48.9 22 0.00075 31.8 5.1 42 174-215 54-95 (251)
87 2v66_B Nuclear distribution pr 48.8 94 0.0032 24.2 13.3 69 129-212 5-73 (111)
88 4dk0_A Putative MACA; alpha-ha 48.8 25 0.00085 31.9 5.8 17 106-122 70-86 (369)
89 2l5g_A GPS2 protein, G protein 48.5 49 0.0017 20.9 5.2 28 188-215 8-35 (38)
90 1ci6_A Transcription factor AT 45.8 64 0.0022 22.3 6.2 27 188-214 30-56 (63)
91 3mud_A DNA repair protein XRCC 45.7 92 0.0031 26.3 8.2 49 94-142 116-164 (175)
92 1ci6_A Transcription factor AT 45.1 69 0.0024 22.1 6.3 32 177-208 26-57 (63)
93 3trt_A Vimentin; cytoskeleton, 45.1 79 0.0027 22.3 9.3 34 178-211 39-72 (77)
94 2lf0_A Uncharacterized protein 44.2 59 0.002 25.8 6.3 51 132-182 8-58 (123)
95 2wt7_B Transcription factor MA 44.2 61 0.0021 24.4 6.2 31 179-209 53-83 (90)
96 3c9i_A Tail needle protein GP2 43.8 1.6E+02 0.0055 25.5 11.2 44 173-216 104-147 (242)
97 3ni0_A Bone marrow stromal ant 43.6 1.1E+02 0.0036 23.4 9.3 26 202-227 67-92 (99)
98 1m1j_A Fibrinogen alpha subuni 43.4 1.6E+02 0.0056 28.5 10.5 23 77-99 54-76 (491)
99 3uo3_A J-type CO-chaperone JAC 43.1 1.4E+02 0.005 24.8 9.9 71 99-179 100-170 (181)
100 2avr_X Adhesion A; antiparalle 42.9 1.2E+02 0.0042 23.9 11.2 28 122-149 4-31 (119)
101 3jsv_C NF-kappa-B essential mo 42.9 1.1E+02 0.0037 23.2 10.6 48 167-214 40-87 (94)
102 2zqm_A Prefoldin beta subunit 42.4 1.1E+02 0.0036 23.0 10.6 38 109-146 9-46 (117)
103 3htk_A Structural maintenance 40.5 80 0.0027 21.1 8.8 17 188-204 26-42 (60)
104 1wle_A Seryl-tRNA synthetase; 40.3 1.9E+02 0.0067 28.1 10.9 20 192-211 127-146 (501)
105 1nkp_B MAX protein, MYC proto- 39.9 84 0.0029 22.6 6.4 9 202-210 61-69 (83)
106 3fpp_A Macrolide-specific effl 39.9 39 0.0013 30.3 5.5 21 110-130 66-86 (341)
107 3w03_C DNA repair protein XRCC 39.4 96 0.0033 26.3 7.4 51 94-144 133-183 (184)
108 2i1j_A Moesin; FERM, coiled-co 39.3 40 0.0014 33.5 5.9 16 78-93 276-291 (575)
109 2fxo_A Myosin heavy chain, car 38.9 1.4E+02 0.0048 23.4 16.7 40 169-208 50-89 (129)
110 2ocy_A RAB guanine nucleotide 38.8 1.6E+02 0.0056 24.2 14.5 7 173-179 85-91 (154)
111 2wt7_B Transcription factor MA 38.0 81 0.0028 23.7 6.0 36 170-205 51-86 (90)
112 2oqq_A Transcription factor HY 37.7 81 0.0028 20.3 5.4 28 187-214 9-36 (42)
113 1f5n_A Interferon-induced guan 37.5 3.2E+02 0.011 27.1 12.9 10 106-115 438-447 (592)
114 2l5g_B Putative uncharacterize 37.5 82 0.0028 20.3 5.5 26 190-215 11-36 (42)
115 1fzc_C Fibrin; blood coagulati 37.4 21 0.00071 33.1 3.2 31 185-215 8-38 (319)
116 4dk0_A Putative MACA; alpha-ha 37.3 30 0.001 31.4 4.3 20 110-129 67-86 (369)
117 3i00_A HIP-I, huntingtin-inter 37.1 1.5E+02 0.0052 23.3 11.5 19 131-149 44-62 (120)
118 1fxk_C Protein (prefoldin); ar 36.9 88 0.003 24.4 6.6 84 176-261 3-108 (133)
119 3cvf_A Homer-3, homer protein 36.6 84 0.0029 23.0 5.8 27 190-216 22-48 (79)
120 1nlw_A MAD protein, MAX dimeri 36.3 1.1E+02 0.0036 22.2 6.4 23 193-215 52-74 (80)
121 1avy_A Fibritin, gpwac M; bact 35.7 1.1E+02 0.0038 22.0 6.0 35 174-208 8-42 (74)
122 4etp_A Kinesin-like protein KA 35.0 1.3E+02 0.0046 28.3 8.5 45 170-214 6-50 (403)
123 1g6u_A Domain swapped dimer; d 34.8 89 0.0031 20.0 6.1 25 190-214 22-46 (48)
124 1fxk_A Prefoldin; archaeal pro 34.5 1.3E+02 0.0043 22.2 6.9 40 172-211 63-102 (107)
125 1jcd_A Major outer membrane li 34.4 1.1E+02 0.0036 20.7 7.9 44 182-227 5-48 (52)
126 1kd8_A GABH AIV, GCN4 acid bas 34.3 75 0.0026 19.8 4.3 24 171-194 5-28 (36)
127 1gk4_A Vimentin; intermediate 33.6 1.4E+02 0.0047 21.7 9.6 27 102-128 29-55 (84)
128 3q8t_A Beclin-1; autophagy, AT 33.4 1.5E+02 0.0052 22.2 15.1 22 104-125 9-30 (96)
129 4fla_A Regulation of nuclear P 33.2 2E+02 0.0067 23.5 12.4 62 171-232 83-145 (152)
130 2e7s_A RAB guanine nucleotide 33.1 64 0.0022 26.1 5.1 22 175-196 104-125 (135)
131 2pms_C Pneumococcal surface pr 33.0 1.3E+02 0.0045 23.9 6.8 36 131-166 10-45 (125)
132 2oqq_A Transcription factor HY 32.4 1E+02 0.0035 19.9 5.4 31 189-219 4-34 (42)
133 1hji_B NUN-protein; bacterioph 31.8 66 0.0022 18.1 3.4 19 139-157 8-26 (26)
134 2f1m_A Acriflavine resistance 31.7 1.1E+02 0.0039 26.2 7.1 6 96-101 52-57 (277)
135 2k48_A Nucleoprotein; viral pr 31.5 1.8E+02 0.0061 22.5 8.5 49 169-217 37-104 (107)
136 3iv1_A Tumor susceptibility ge 31.3 1.5E+02 0.0052 21.6 10.0 49 172-220 16-64 (78)
137 3lss_A Seryl-tRNA synthetase; 31.3 3.5E+02 0.012 26.2 11.0 24 190-213 113-136 (484)
138 1x8y_A Lamin A/C; structural p 31.1 1.5E+02 0.0053 21.6 8.4 12 171-182 67-78 (86)
139 3i2w_A Syndapin, LD46328P; EFC 30.9 2.6E+02 0.009 24.2 13.9 20 239-258 248-267 (290)
140 3abh_A Pacsin2, protein kinase 30.9 2.7E+02 0.0094 24.4 20.1 45 109-153 139-183 (312)
141 3lay_A Zinc resistance-associa 30.8 2.3E+02 0.008 23.6 10.7 14 199-212 117-130 (175)
142 3he4_A Synzip6; heterodimeric 30.6 1.2E+02 0.004 20.0 5.2 33 170-202 20-52 (56)
143 2wt7_A Proto-oncogene protein 30.3 1.3E+02 0.0045 20.5 7.1 15 199-213 41-55 (63)
144 2w83_C C-JUN-amino-terminal ki 30.0 1.1E+02 0.0039 22.2 5.4 31 178-208 41-71 (77)
145 3abd_X REV3, HREV3, DNA polyme 29.4 16 0.00055 24.3 0.7 11 40-50 23-33 (52)
146 1nov_D Nodamura virus coat pro 29.4 37 0.0013 22.1 2.4 33 77-110 2-34 (44)
147 1lwu_B Fibrinogen beta chain; 29.1 61 0.0021 29.9 4.9 15 194-208 34-48 (323)
148 3o0z_A RHO-associated protein 28.6 2.6E+02 0.0088 23.3 19.3 49 167-215 90-138 (168)
149 2zdi_C Prefoldin subunit alpha 28.3 60 0.002 26.1 4.2 41 107-147 10-53 (151)
150 4etp_A Kinesin-like protein KA 28.2 2E+02 0.0067 27.1 8.5 30 178-207 7-36 (403)
151 2yko_A LINE-1 ORF1P; RNA-bindi 28.1 1.3E+02 0.0045 26.4 6.6 42 169-210 8-49 (233)
152 3i00_A HIP-I, huntingtin-inter 28.0 2.2E+02 0.0074 22.3 10.6 30 181-210 33-62 (120)
153 2z2q_B Coat protein gamma; wil 27.9 40 0.0014 21.9 2.4 34 77-111 2-35 (44)
154 1vcs_A Vesicle transport throu 27.9 1.9E+02 0.0066 21.7 7.4 23 199-221 71-93 (102)
155 1fpo_A HSC20, chaperone protei 27.6 2.5E+02 0.0086 22.9 11.7 72 97-175 86-157 (171)
156 2i0m_A Phosphate transport sys 27.2 2.6E+02 0.0088 22.9 8.8 51 132-186 12-62 (216)
157 1fxk_C Protein (prefoldin); ar 27.0 2.2E+02 0.0074 22.0 13.6 36 173-208 94-129 (133)
158 1nkp_B MAX protein, MYC proto- 27.0 1.2E+02 0.004 21.8 5.3 18 187-204 60-77 (83)
159 1y4c_A Maltose binding protein 26.8 4.2E+02 0.014 25.2 12.0 97 101-200 389-491 (494)
160 3bas_A Myosin heavy chain, str 26.7 1.9E+02 0.0065 21.2 11.7 45 173-217 13-57 (89)
161 2l5g_B Putative uncharacterize 26.5 1.3E+02 0.0045 19.3 5.5 26 182-207 10-35 (42)
162 4emc_A Monopolin complex subun 26.5 1.5E+02 0.0051 25.3 6.4 6 284-289 146-151 (190)
163 3iox_A AGI/II, PA; alpha helix 26.5 4.6E+02 0.016 25.6 14.8 19 196-214 74-92 (497)
164 2zqm_A Prefoldin beta subunit 26.1 2E+02 0.007 21.4 12.6 35 177-211 73-107 (117)
165 1sum_B Phosphate transport sys 26.0 2.9E+02 0.0099 23.1 8.7 51 132-186 12-62 (235)
166 3trt_A Vimentin; cytoskeleton, 25.9 1.7E+02 0.0059 20.5 10.3 16 199-214 53-68 (77)
167 2zdi_C Prefoldin subunit alpha 25.8 1.7E+02 0.0057 23.4 6.6 36 173-208 104-139 (151)
168 2w6a_A ARF GTPase-activating p 25.6 1.7E+02 0.0058 20.3 8.6 48 168-215 14-61 (63)
169 3s9g_A Protein hexim1; cyclin 25.2 2.3E+02 0.0079 21.6 9.8 49 167-215 37-85 (104)
170 2zvf_A Alanyl-tRNA synthetase; 25.1 1.3E+02 0.0046 24.1 6.0 29 185-213 29-57 (171)
171 3ajw_A Flagellar FLIJ protein; 24.9 2.4E+02 0.0082 21.8 8.6 27 105-131 87-113 (150)
172 1l8d_A DNA double-strand break 24.7 2.2E+02 0.0074 21.2 12.8 37 115-151 5-41 (112)
173 1x79_B RAB GTPase binding effe 24.7 2.5E+02 0.0085 21.9 13.0 33 169-201 40-72 (112)
174 1fmh_A General control protein 24.6 1.2E+02 0.004 18.0 4.8 28 115-142 3-30 (33)
175 3etw_A Adhesin A; antiparallel 24.5 2.6E+02 0.0088 22.0 13.2 22 123-144 5-26 (119)
176 3t97_C Nuclear pore glycoprote 24.5 1.8E+02 0.0062 20.3 6.0 44 105-148 4-47 (64)
177 1wle_A Seryl-tRNA synthetase; 24.4 4.9E+02 0.017 25.2 10.7 31 125-155 75-105 (501)
178 2pnv_A Small conductance calci 24.2 1.5E+02 0.0051 19.1 5.0 25 192-216 13-37 (43)
179 1z0k_B FYVE-finger-containing 24.2 1.4E+02 0.0049 21.3 5.0 20 189-208 47-66 (69)
180 3htk_A Structural maintenance 24.1 1.6E+02 0.0055 19.5 8.0 50 101-150 7-56 (60)
181 3qne_A Seryl-tRNA synthetase, 24.0 5E+02 0.017 25.1 12.0 48 157-204 13-63 (485)
182 2ovc_A Potassium voltage-gated 23.6 71 0.0024 19.6 2.9 25 237-261 6-30 (33)
183 1gmj_A ATPase inhibitor; coile 23.5 2.3E+02 0.0077 21.0 9.0 20 194-213 57-76 (84)
184 4fi5_A Nucleoprotein; structur 23.2 2.7E+02 0.0091 21.7 8.3 23 194-216 68-90 (113)
185 3iv1_A Tumor susceptibility ge 22.6 2.3E+02 0.0078 20.7 9.3 65 77-141 3-67 (78)
186 1cii_A Colicin IA; bacteriocin 22.4 5.5E+02 0.019 25.1 13.2 21 194-214 404-424 (602)
187 1yzm_A FYVE-finger-containing 22.4 1.8E+02 0.0062 19.5 5.8 20 189-208 29-48 (51)
188 3u06_A Protein claret segregat 22.4 2.7E+02 0.0092 26.3 8.2 32 173-204 9-40 (412)
189 1ses_A Seryl-tRNA synthetase; 22.3 4.5E+02 0.015 24.7 9.8 18 193-210 76-93 (421)
190 2xz3_A Maltose ABC transporter 22.2 4.7E+02 0.016 24.2 10.8 48 154-201 373-420 (463)
191 3vmx_A Voltage-gated hydrogen 21.9 1.8E+02 0.0062 19.3 6.6 35 173-207 3-37 (48)
192 2dq3_A Seryl-tRNA synthetase; 21.8 1.1E+02 0.0038 29.0 5.4 30 128-157 38-67 (425)
193 3m9b_A Proteasome-associated A 21.8 1.4E+02 0.0049 26.5 5.7 35 183-217 56-90 (251)
194 1nlw_A MAD protein, MAX dimeri 21.6 2E+02 0.0068 20.7 5.6 17 188-204 61-77 (80)
195 3kin_B Kinesin heavy chain; mo 21.6 1.4E+02 0.0047 23.2 5.0 22 186-207 94-115 (117)
196 3viq_A SWI5-dependent recombin 21.1 2.3E+02 0.0078 22.3 6.2 44 104-153 12-55 (122)
197 3aco_A Pacsin2, protein kinase 21.0 4.5E+02 0.015 23.5 15.7 23 238-260 269-291 (350)
198 1dip_A Delta-sleep-inducing pe 21.0 1.1E+02 0.0038 22.2 3.9 29 188-216 15-43 (78)
199 3t97_B Nuclear pore complex pr 20.9 2.2E+02 0.0077 20.0 8.7 42 180-221 9-50 (65)
200 2c5k_T Syntaxin TLG1, T-snare 20.9 2.6E+02 0.009 20.8 7.3 49 99-150 6-59 (95)
201 3u0c_A Invasin IPAB, 62 kDa an 20.8 3.7E+02 0.013 22.5 9.7 12 85-96 56-67 (201)
202 3q8t_A Beclin-1; autophagy, AT 20.8 2.7E+02 0.0091 20.8 15.4 39 110-148 8-46 (96)
203 1t2k_D Cyclic-AMP-dependent tr 20.7 2E+02 0.0069 19.3 8.3 33 177-209 25-57 (61)
204 3ghg_C Fibrinogen gamma chain; 20.6 5.5E+02 0.019 24.3 15.1 46 165-210 89-134 (411)
205 1jnm_A Proto-oncogene C-JUN; B 20.4 2.1E+02 0.0071 19.4 6.0 30 178-207 26-55 (62)
206 3c9i_A Tail needle protein GP2 20.0 4.3E+02 0.015 22.9 14.2 53 169-221 79-131 (242)
No 1
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=97.14 E-value=0.035 Score=53.63 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022272 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G 157 (300)
-+..+.+++...+..++..-.||+..|+....++++.|.+.+... +..--...++++++++++...+.+.+|-.|=.
T Consensus 349 ~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 425 (471)
T 3mq9_A 349 QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANH-- 425 (471)
T ss_dssp THHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcch--
Confidence 356778888888888888888999999999999999998876654 67778888999999999999999999887622
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
-...-..+++..+. +....+++|+..+.++..+|++.+.+.+.+
T Consensus 426 ------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 426 ------TVMALMASLDAEKA-------QGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp ------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222223333333 333445555555555555555555555444
No 2
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=97.14 E-value=0.0081 Score=45.01 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 119 RQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (300)
Q Consensus 119 r~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L 193 (300)
+.++..+-.....++++...++..++.-...|+..+ .++-.-|..||.+|..+|.++..+..++.+++.++..+
T Consensus 5 ~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 5 QEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555666777888888888889999999999 55567999999999999999999999999888887654
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.53 E-value=0.37 Score=43.15 Aligned_cols=144 Identities=9% Similarity=0.102 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ 181 (300)
.-++..+..++..+..++..+..+-...+.++..++.....+.+++.+-.. +...+|= .....++..+...+..++.
T Consensus 35 ~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~-v~~~kE~--~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 35 DKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE-IKSEREL--RSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSSSHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 445566666666677777777777777777777777777777777766643 3333331 1222344445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhcCCCCCcHHHHHHHHHHH
Q 022272 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT---------ATKVSEMLGNVNTSSALSAFEKMEEK 249 (300)
Q Consensus 182 ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Aka---------q~~v~~~~~~~~~~~a~~~feR~eek 249 (300)
.+..+...++.++..+..++.++.+.+......++.....-+ ..+-.....+++ .+....++|++.+
T Consensus 112 eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~-~~lL~~Yerir~~ 187 (256)
T 3na7_A 112 EIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTE-PKIYSFYERIRRW 187 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Confidence 555555555555555555555555555555544444332211 112222333442 3556666666654
No 4
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.28 E-value=0.34 Score=39.13 Aligned_cols=112 Identities=19% Similarity=0.298 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL--ALQKGEEDLAREALKRRKSYADNANALKA 181 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~--AL~~G~EdLAreAL~rk~~~e~~~~~le~ 181 (300)
-+-.+..+++.+.+++..+.......+.++.++..+..+..++..+... ..-..-++.-.....++..++..+..+..
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999999988888888887655442 22233355666677788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 182 ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
.++..+.....|...-++++..+.+++..++.+-
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988899888888888887664
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.83 E-value=0.96 Score=40.41 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=78.7
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Q 022272 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK 167 (300)
Q Consensus 88 a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~ 167 (300)
..++.-++.++.-..-+-..|.++++.+..++..+..+-..-..++.++..++..+.+...+....-.+- +-++
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l--~~v~---- 87 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM--SEIK---- 87 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCS----
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccC----
Confidence 4455566777766666788999999999999999999999999999999999999988888877653321 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
-......|..+++.++..+..+...+..+..+++..+.....+...
T Consensus 88 ----~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~ 133 (256)
T 3na7_A 88 ----SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE 133 (256)
T ss_dssp ----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334445555555555555555555555555555554444444443
No 6
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=95.65 E-value=0.053 Score=46.31 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH----HHHHHHHH
Q 022272 130 KRLENKCKAAEQASEDWYRKAQLALQKGEEDL----AREALKRR 169 (300)
Q Consensus 130 k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdL----AreAL~rk 169 (300)
+.+.+++..++.+-.+.....+.|.++|+.+- |++++..+
T Consensus 24 r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~r 67 (179)
T 2gd5_A 24 RVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSR 67 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34445555566666666666788889999884 55554444
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.58 E-value=0.45 Score=46.91 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (300)
Q Consensus 111 me~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA 150 (300)
+++++.+.+..+..+.....+.++.+...+.+++++....
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY 493 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3445555666666666666666666666666666554443
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.26 E-value=4.6 Score=48.12 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCcHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKV-SEMLGNVNTSSALSAFEKMEEK 249 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v-~~~~~~~~~~~a~~~feR~eek 249 (300)
.+++++...++.+...+..+..+...+.+|+.++++...+++.|+......+.+-.- ...++++ .+.=.|+.+.
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL-----~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL-----NSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhccccHHHH
Confidence 344444455555555555555555555555555555555555555554433332211 1122332 3455677777
Q ss_pred HHhHHHHHH
Q 022272 250 VLTMESQAD 258 (300)
Q Consensus 250 i~~~ea~ae 258 (300)
+...+.+..
T Consensus 2093 ~~~l~~~~~ 2101 (3245)
T 3vkg_A 2093 SENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665544
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.13 E-value=0.32 Score=52.71 Aligned_cols=108 Identities=11% Similarity=0.197 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ---KGEEDLAREALKRRKSYADNANALKAQ 182 (300)
Q Consensus 106 Q~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~---~G~EdLAreAL~rk~~~e~~~~~le~q 182 (300)
..|+++++.+.+++..+..+......++.++..++.+..++......... .-.+.+ .....++..++.++..++.+
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l-~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR-VRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666665555555566666555555555432221110 000111 11223344444444455554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 183 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 183 l~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
++..+.....+...+.+++.++.+++.+++.+
T Consensus 936 lee~ee~l~el~~e~~~le~el~~L~~eleel 967 (1184)
T 1i84_S 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967 (1184)
T ss_dssp HHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.51 E-value=3.1 Score=35.21 Aligned_cols=115 Identities=12% Similarity=0.148 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Q 022272 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (300)
Q Consensus 98 EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (300)
.|-+..|+-.+.|+.+.|..=-.+.++..-....+...+..++..+.++..+... .-..+..++.++.
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~------------L~~~k~~Leke~~ 72 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRI------------LENSKSQTDKDYY 72 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 3445556667778888777777777766666666666666666666666665544 2234555677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq 224 (300)
.|+.++++-...-.+....+..|+.+|..+..+.+.++.+...+.+.
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e 119 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGE 119 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888889999888888888887776554
No 11
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=93.46 E-value=0.63 Score=41.08 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 128 ~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
..+.|.+++..++.+-.+.....+.|.++|+-+-||-.+.......+ -..++-.+
T Consensus 22 ~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk-------------------------~~~rl~~~ 76 (218)
T 3frt_A 22 EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRK-------------------------AVSKLYAS 76 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHH
Confidence 34556677777888888888899999999999877755433322222 22234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022272 208 RSKKDTLKARAQSAKTATKVSEMLGN 233 (300)
Q Consensus 208 k~k~~~LkAr~~~Akaq~~v~~~~~~ 233 (300)
+.+++.+..+.+.+.+..++..++.+
T Consensus 77 kaqL~sV~~rlqt~~s~~~v~~sM~~ 102 (218)
T 3frt_A 77 KAHMNSVLMGMKNQLAVLRVAGSLQK 102 (218)
T ss_dssp HHHHHHHHHHHHHHHHCC----CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566555555554443
No 12
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.41 E-value=0.45 Score=51.56 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 112 e~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A 153 (300)
...+.+.+..+..+...-..++..+.+++.++..++.+...+
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566555555556666666666666665555444
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.14 E-value=2.2 Score=41.88 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 188 NVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 188 ~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+..+.++..+.+++.++++.+.+...++
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 3333333444444444444444444444
No 14
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=92.47 E-value=4.4 Score=34.28 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
.-+...+.++...+..+...+..+......++..+..+...+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (284)
T 1c1g_A 100 DRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33444444555555555555444444444444444444444444433
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.17 E-value=11 Score=45.01 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 163 REALKRRKSYADNANA------LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 163 reAL~rk~~~e~~~~~------le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (300)
.++..++...+++++. +++.++.++......+..+.+.+.+|.+++.++..|++....+
T Consensus 1990 ~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 1990 KEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333 3344445555555555555555555555555555555554443
No 16
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.95 E-value=4 Score=30.69 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~r 149 (300)
.+-.+..+++.+.+++..+.......+.++.++..+..+..++..+
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999988888888888777
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.76 E-value=2.7 Score=41.52 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 022272 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK-SYADNANALKAQLD 184 (300)
Q Consensus 106 Q~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~-~~e~~~~~le~ql~ 184 (300)
-.=+|+..-|.++|..+.++..+.+....-+ +...+.|..+...+. +++. ...+.. +++..+..|+..++
T Consensus 57 kqErDltkrINELKnqLEdlsKnsKdseqy~---k~~~E~Lr~rq~q~~--dNdN----tynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEYQKNNKDSHSLT---TNIMEILRGDFSSAN--NRDN----TYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH---HHHHHTTSSHHHHHH--HHHH----HHHHTTHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHHHhhchhHHHHH---HHHHHHHHHHHHhhh--ccch----hHHHHHHHHHHHHHHHHHHHH
Confidence 3334566666666666666644555444444 334444544444443 2221 223333 55666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 185 QQKNVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 185 ~~~~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
.+-..+..|+..|+.+..+|+.++--++
T Consensus 128 nQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 128 EKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7667777777777777776666654444
No 18
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=90.76 E-value=5.4 Score=31.88 Aligned_cols=100 Identities=10% Similarity=0.132 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN 188 (300)
Q Consensus 109 reme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~ 188 (300)
.=.+....++...++.+.......+.++..+.....+|..+-......|= .......+..-+..|...++.+..
T Consensus 15 ~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~------~~~~l~~~~~fi~~L~~~I~~q~~ 88 (150)
T 3ajw_A 15 DLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGI------ASNRWINYQQFIQTLEKAIEQHRL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGG------GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888888888888888888888887765544333332 123345556667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 189 VVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 189 ~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
.+..+...+......+.+...++..+
T Consensus 89 ~l~~~~~~~e~~r~~l~~a~~~~k~~ 114 (150)
T 3ajw_A 89 QLTQWTQKVDLALKSWREKKQRLQAW 114 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776666666555543
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=89.01 E-value=9 Score=31.89 Aligned_cols=102 Identities=11% Similarity=0.131 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Q 022272 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (300)
Q Consensus 98 EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (300)
+|...-.+..-| ++.+|..+..-+...-+.-..++..+......+..++.....+ -++...|+.++.
T Consensus 14 e~ad~KyeEvaR-~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seeka------------sqrEd~yEeqIk 80 (155)
T 2efr_A 14 SKNYHLENEVAR-LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKY------------SQKEDKYEEEIK 80 (155)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHH------------HHHHHHHHHHHH
Confidence 333333343333 4555554444444444444444444444444444444443333 233344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~ 212 (300)
.|...+..+....+.....+.+|+..|..+..++.
T Consensus 81 ~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 81 VLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444444444444444444444433333
No 20
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.14 E-value=8.4 Score=36.52 Aligned_cols=65 Identities=5% Similarity=0.110 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Q 022272 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA 162 (300)
Q Consensus 98 EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLA 162 (300)
.|=+..+.|+-.|++..|.-++.-|-..+.+-+.|+.-++.+..+|.++|.....+...=.-..+
T Consensus 105 ~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~ 169 (390)
T 1deq_A 105 NNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCS 169 (390)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 34567777888888888888888888888888888888888888888888888665554333333
No 21
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.92 E-value=7.6 Score=29.70 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 132 LENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 132 le~k~~~~~~~i~~~e~rA~~A 153 (300)
+.+++..+....+.|.++|..+
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~ 28 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQA 28 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777766
No 22
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=87.66 E-value=9.9 Score=36.19 Aligned_cols=45 Identities=24% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (300)
-..+-.|+..++.-..+ -...+++++.+|.++..++..+.+....
T Consensus 424 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 424 NHTVMALMASLDAEKAQ---GQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555443333 3357777777777777777766665544
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.28 E-value=8.4 Score=29.54 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 132 LENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 132 le~k~~~~~~~i~~~e~rA~~A 153 (300)
+.+++..+....+.|.++|..+
T Consensus 7 IKkKm~~lk~e~e~a~drae~~ 28 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQA 28 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777765
No 24
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.81 E-value=9.8 Score=29.84 Aligned_cols=82 Identities=11% Similarity=0.214 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 186 (300)
Q Consensus 107 ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~ 186 (300)
.|.++...|..+...++.-+.. ++.++.++.. -++.++++.-+..++..|+.....-
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~-------idelk~ei~q----------------~~~~lE~I~vLkaQv~IY~~DF~aE 81 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQEL-------IDKLKEEAEQ----------------HKIVMETVPVLKAQADIYKADFQAE 81 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----------------HHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4556666676666666653333 2333332222 1233344555666666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 187 KNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 187 ~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
...-+++.....+|+.+++.++++.
T Consensus 82 RadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 82 RHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554443
No 25
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.58 E-value=10 Score=29.88 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 180 (300)
..+++.+|.+++.+|..+...-+++... ++.++..++++..+=..- + ..+...++.+..++
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~le-------ldn~~~~~edfk~KyE~E-------~-----~~r~~~E~di~~lr 75 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVE-------RDNLAEDIMRLREKLQEE-------M-----LQREEAENTLQSFR 75 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-------H-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHH-------H-----HHHHHHHHHHHHhh
Confidence 3567778888887777777665555544 444444444444333221 1 12333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
..+ +...-.-..|+.+++.++.++.-|+..
T Consensus 76 K~l-------D~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 76 QDV-------DNASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcc-------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 444444455666666666666666644
No 26
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.15 E-value=15 Score=31.45 Aligned_cols=111 Identities=13% Similarity=0.133 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ 181 (300)
.-+.....++.+.+..++..+......-+.++..++.--...++.......-+ .-|-.+.-.-+..+.........
T Consensus 13 ~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~----~~L~~E~e~~k~K~~~~~~e~~~ 88 (189)
T 2v71_A 13 AYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN----QRLKYEVEALKEKLEHQYAQSYK 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456666677777777777776666666555443333322222222211 11222222222222333222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 182 ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
++..+...+..|+.....+..+|.++...-+.|--
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444444444444444455555555555554443
No 27
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=86.03 E-value=27 Score=34.04 Aligned_cols=21 Identities=10% Similarity=0.362 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022272 103 ILEQAVLEMNDDLVKMRQATA 123 (300)
Q Consensus 103 mLeQ~Ireme~~l~kar~alA 123 (300)
-++..|++|++.+.++.....
T Consensus 97 ~V~~~LqeLe~~l~~lsn~Ts 117 (464)
T 1m1j_B 97 TVKPVLRDLKDRVAKFSDTST 117 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhhhhh
Confidence 355566666666665544433
No 28
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=85.37 E-value=11 Score=29.02 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 141 QASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (300)
Q Consensus 141 ~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~ 205 (300)
..+.+.-.+|+.|+..++.+.||..+ ++.....++..-+.........+..|+..|..|+..|-
T Consensus 32 ~~A~dKl~~A~~Am~~~~y~~Ar~lA-EqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 32 KLAQDKYAAAQIAMTAESYKKARLLA-EQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555667899999999999998764 55667777777777777777777777777777776654
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.11 E-value=27 Score=33.28 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 022272 118 MRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (300)
Q Consensus 118 ar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~ 158 (300)
.+..-......++.+++.+...+....+.+...+..+.+=+
T Consensus 358 ~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 33333355556667777777777777777766666654433
No 30
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.10 E-value=13 Score=29.52 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 130 KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 130 k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
+.|++++.+.+.-..+|+.+|-.+=+. =.+| +.++++....-+.+++.++..+..|...|+....++++++.
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqT-V~tL-------~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHT-VMAL-------MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666777777666554221 0111 11111111111333455555555555555566666666665
Q ss_pred HHHHHHHHHH
Q 022272 210 KKDTLKARAQ 219 (300)
Q Consensus 210 k~~~LkAr~~ 219 (300)
.-..+..|..
T Consensus 100 ~~~~~~~r~~ 109 (121)
T 3mq7_A 100 ENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHC
T ss_pred hchhhhhHhh
Confidence 5555555443
No 31
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.00 E-value=7.8 Score=28.81 Aligned_cols=66 Identities=14% Similarity=0.281 Sum_probs=55.5
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022272 87 KSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (300)
Q Consensus 87 ~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~ 156 (300)
.+.|..++ |.+.+|...|.++++.-..+......+...+..+.++..++..+...|+.+...-|.+
T Consensus 12 E~KIq~av----dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 12 EAKVQQAI----DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444 4567899999999999999999999999999999999999999999999998876654
No 32
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=84.98 E-value=15 Score=35.26 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 166 L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
.+.-....+++..|+..+......+..|+..+..++.+|+.++.+...|..
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444445666677777777777777777777777777777777666665543
No 33
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=83.84 E-value=15 Score=29.18 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
+.+.++.++..|...+......+++|+.....+..+|...
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 4667788888888888888888888888888777776554
No 34
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=83.15 E-value=13 Score=28.11 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (300)
Q Consensus 114 ~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L 193 (300)
++.....-+|..+-.-+.||++=..++.++..|..+-.. .-...|+..+..+..+++.....-..+
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~--------------~~~~~ye~~i~~Lr~~i~~~~~ek~~l 75 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKS--------------RLGDLYEEEMRELRRQVDQLTNDKARV 75 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--------------CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777788888888888887777654211 011235666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022272 194 VSNTRLLESKIQEARSK 210 (300)
Q Consensus 194 ~~~l~~Le~ki~e~k~k 210 (300)
...+..|...+.+++.|
T Consensus 76 ~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 76 EVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 66666666666665554
No 35
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.87 E-value=27 Score=34.52 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKI 204 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki 204 (300)
.++..++..|+.+...|++||..|
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444
No 36
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=82.87 E-value=6.4 Score=30.22 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (300)
Q Consensus 108 Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~ 146 (300)
+.+.++.+...+..+..+......++.++..+...+..+
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666665555555555556666665555554
No 37
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=82.47 E-value=39 Score=33.09 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~ 189 (300)
+.+..|..-...|++|...-..++..|+....+...-. .++.+-++.+-+.-...+..++..++.++..++.....
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n----~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAAN----AALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777776665555555544443332211 12333444444455555666666666666666555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 190 VNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
+.+-+.++...+..+..+
T Consensus 82 -------~AeY~~kl~aYe~~~~~~ 99 (497)
T 3iox_A 82 -------LADYPVKLKAYEDEQTSI 99 (497)
T ss_dssp -------HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 334444555555444433
No 38
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=81.42 E-value=35 Score=32.29 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
+++.++.-|+..++.+-..+..|+..|+.+..+|+.++-.+
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665566667777777766666666655
No 39
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=80.59 E-value=6.1 Score=29.06 Aligned_cols=51 Identities=10% Similarity=-0.011 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (300)
.+++.+..|+..++-++..++.|..-+-+....|..++.+...|..|....
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777788888888888888888888888888888888888777765544
No 40
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.22 E-value=68 Score=34.42 Aligned_cols=38 Identities=5% Similarity=0.185 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
..++.+..++.+++..+..+.++......++.++.+++
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 41
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.40 E-value=31 Score=29.52 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Q 022272 85 VVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLARE 164 (300)
Q Consensus 85 li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAre 164 (300)
+.+..++...+.+++-..-|+.+...-++==..+...|.+.-...+.+..++..+..+++.|..+.....
T Consensus 14 ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~---------- 83 (189)
T 2v71_A 14 YWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY---------- 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3444555555555555555555554444444455555666666667777777777778888877664432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 165 AL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
..+...+..|+.++.........|+..|+.|+..-..+.+......
T Consensus 84 -----~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~ 129 (189)
T 2v71_A 84 -----AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 129 (189)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2234456667777777777777777777777777777777777544
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.72 E-value=49 Score=31.40 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=3.7
Q ss_pred hHHHHHHH
Q 022272 78 LFDRLARV 85 (300)
Q Consensus 78 if~Rl~~l 85 (300)
+..|+..+
T Consensus 303 ~~~~l~~~ 310 (487)
T 3oja_A 303 FADRLIAL 310 (487)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHH
Confidence 33555444
No 43
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=77.19 E-value=15 Score=25.03 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLES 202 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ 202 (300)
+..|..+++++...|++|..++..++.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 44
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.69 E-value=19 Score=26.21 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 132 LENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 132 le~k~~~~~~~i~~~e~rA~~A 153 (300)
+..++..+....+.|..++..+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~ 25 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQA 25 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776665
No 45
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=76.19 E-value=2.5 Score=42.34 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=17.6
Q ss_pred HHHHhhhccC-CHHHHHHHHHHHcCC
Q 022272 269 EGKFALLETS-SVDDDLANLKKELSG 293 (300)
Q Consensus 269 e~kla~le~~-~vddeLarLKa~l~~ 293 (300)
+.+...++++ .+.+.|..|+.++..
T Consensus 504 ~eR~~~~ekn~~lq~qL~~L~~el~~ 529 (575)
T 2i1j_A 504 ADRRTLAERNERLHNQLKALKQDLAR 529 (575)
T ss_dssp GGCCCHHHHCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5555555665 588999999988654
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=75.95 E-value=30 Score=28.01 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=12.2
Q ss_pred chHHHHHHHHHHHHHHHh
Q 022272 77 NLFDRLARVVKSYANAIL 94 (300)
Q Consensus 77 sif~Rl~~li~a~~n~~l 94 (300)
.-+.++..+|-..++++-
T Consensus 28 e~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356777777777766665
No 47
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=72.92 E-value=26 Score=25.96 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
.-.+..++++....+..|+..++.+..+|.+++.+...
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666554443
No 48
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=72.78 E-value=60 Score=31.52 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQV 125 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v 125 (300)
++.-|++|+..|.++......+
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a 114 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSS 114 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHH
Confidence 4455556666665555554433
No 49
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=72.41 E-value=33 Score=26.90 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKN 188 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~ 188 (300)
.+.+++.+++.|+.++.-.+.
T Consensus 84 ~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 84 ARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666655443
No 50
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=70.16 E-value=20 Score=31.36 Aligned_cols=81 Identities=15% Similarity=0.256 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (300)
||...+...=|.++....++.+.+..+-..++.++.++..+.+.-+.- -|+ -+|++++..++... .+-.
T Consensus 7 ~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~--~ar--------ilAkelVR~Rk~~~-rl~~ 75 (218)
T 3frt_A 7 PPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKD--VCI--------VLAKEMIRSRKAVS-KLYA 75 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH--HHH--------HHHHHHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHH--------HHHHHHHHHHHHHH-HHHH
Confidence 666666655555555555555555555555666666555544432221 111 37777766555554 4555
Q ss_pred HHHHHHHHHHHH
Q 022272 179 LKAQLDQQKNVV 190 (300)
Q Consensus 179 le~ql~~~~~~v 190 (300)
+..+++...-++
T Consensus 76 ~kaqL~sV~~rl 87 (218)
T 3frt_A 76 SKAHMNSVLMGM 87 (218)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555444433
No 51
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=69.24 E-value=15 Score=34.13 Aligned_cols=49 Identities=6% Similarity=0.048 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
...+.+++..|+..+..+..++..|+..+..++.+|.+++.+...|..+
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666677777777777777777777777666666543
No 52
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=68.63 E-value=24 Score=23.80 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
+.....++.+++.+...-.+|...+.....+|..++.+.+.|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666666666666666666666666666666666544
No 53
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=67.82 E-value=92 Score=30.22 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e 147 (300)
..|+..+.++.+....+..-+..+....+..+.++......+.++.
T Consensus 103 qeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~ 148 (464)
T 1m1j_B 103 RDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYN 148 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 3355555555555555555555554444555555555444444444
No 54
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=67.59 E-value=49 Score=26.99 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (300)
Q Consensus 111 me~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v 190 (300)
....|..+....-..-...+.++.+-......+..++.+...|.. .|.++-.+.......+..++..++.....+
T Consensus 22 a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~-----~aeeadrKyeE~~RKl~~~E~dLeraeeRa 96 (147)
T 2b9c_A 22 ALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH-----IAEDADRKYEEVARKLVIIESDLERAEERA 96 (147)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555556777788888888888888888887753 455665566666666677777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 191 NNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 191 ~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
+.....+..|+..|..+-+.+..|
T Consensus 97 e~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 97 ELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666666665555544444433
No 55
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=67.56 E-value=39 Score=25.77 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 163 REALKRRKSYADN------ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 163 reAL~rk~~~e~~------~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
|++|.+....-.+ ...++.++......++.|+.++.+++.-+.++..
T Consensus 38 regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 38 REALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555554222 2233667777777777777777777777777643
No 56
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=67.35 E-value=47 Score=31.75 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 165 AL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
.++++..++..+...+.++..++..+..+...|..|+.+|.++.
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 57
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=65.94 E-value=12 Score=26.97 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESK 203 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~k 203 (300)
+.++..|+.....+......|+..+..|..+
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444333
No 58
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=65.49 E-value=1e+02 Score=30.01 Aligned_cols=75 Identities=16% Similarity=0.281 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcC--C-CCCcHHHHHHHHHHHH------HhHHHHHHHhhcccCCChHHHHhhhcc--------CCHHH
Q 022272 220 SAKTATKVSEMLGN--V-NTSSALSAFEKMEEKV------LTMESQADSLNQLTTDDLEGKFALLET--------SSVDD 282 (300)
Q Consensus 220 ~Akaq~~v~~~~~~--~-~~~~a~~~feR~eeki------~~~ea~aeA~~el~~~~Le~kla~le~--------~~vdd 282 (300)
.++..+.+.+...| + +.++|..+|+++..-+ ...+|-+.|+..++.+++...|..+++ ..+.+
T Consensus 449 ykkIAkELAe~fKGKKIRSvDDALaSfEKyk~NlnkKfnakDR~AIvNALkSvDa~dmAkNL~kfSKaFg~tgKvIka~D 528 (602)
T 1cii_A 449 AEQLAREMAGQAKGKKIRNVEEALKTYEKYRADINKKINAKDRAAIAAALESVKLSDISSNLNRFSRGLGYAGKFTSLAD 528 (602)
T ss_dssp HHHHHHHHHHTTTTCBCCCHHHHHHHHHHTHHHHTTSSCSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSCBCCHHH
T ss_pred HHHHHHHHHHhcCCCccCCHHHHHHHHHHHhcChhhhcchhhHHHHHHHHHHcCHHHHHHHHHHHHhhhhhhhhhhhHHH
Confidence 33444445444433 2 2478999999998876 466788888888877788888877652 26788
Q ss_pred HHHHHHHHcCCC
Q 022272 283 DLANLKKELSGS 294 (300)
Q Consensus 283 eLarLKa~l~~~ 294 (300)
.+..++..+.-+
T Consensus 529 V~eK~kkG~ETG 540 (602)
T 1cii_A 529 WITEFGKAVRTE 540 (602)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHhhcCC
Confidence 888888766443
No 59
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=65.27 E-value=9 Score=23.17 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=20.5
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHh
Q 022272 236 TSSALSAFEKMEEKVLTMESQADSL 260 (300)
Q Consensus 236 ~~~a~~~feR~eeki~~~ea~aeA~ 260 (300)
..+..+.|.|+|+++..|.-..+.+
T Consensus 5 ~nTIGaRLnRvE~k~t~MD~kL~~i 29 (31)
T 3hfe_A 5 SNTIGARLNRVEDKVTQLDQRLALI 29 (31)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999998877654
No 60
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.77 E-value=54 Score=26.44 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=6.1
Q ss_pred HHHHHHHHHHH
Q 022272 102 KILEQAVLEMN 112 (300)
Q Consensus 102 ~mLeQ~Ireme 112 (300)
..+|..|+++.
T Consensus 35 ~~vd~km~ei~ 45 (138)
T 3hnw_A 35 SYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 44555555555
No 61
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=64.39 E-value=1.1e+02 Score=29.76 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
++.++.-|+..++.+-..+.-|+..|+.+..+|+.++.
T Consensus 116 Le~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~ 153 (491)
T 1m1j_A 116 LRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEV 153 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555545555556666555555555543
No 62
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=64.01 E-value=61 Score=26.78 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=20.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (300)
Q Consensus 96 ~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e 147 (300)
++|+-....+..|.++++.|..+-..+-.+-........+-+.++.+|..+.
T Consensus 32 raEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~ 83 (155)
T 2efr_A 32 RAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443333333333333333333333333333
No 63
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=63.49 E-value=61 Score=26.76 Aligned_cols=47 Identities=13% Similarity=0.206 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Q 022272 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ--SAKTATKVSEML 231 (300)
Q Consensus 185 ~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~--~Akaq~~v~~~~ 231 (300)
.+......|.-++..++.++..++.+=..|..|.- .++...++|...
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~an 148 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNSEI 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344445555555666666666666666666633 233334445443
No 64
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=62.96 E-value=28 Score=25.22 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
.++.+....+..|+..+.+.+..|.+++.+++-
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555554443
No 65
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=60.95 E-value=33 Score=32.45 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=15.3
Q ss_pred cccCchHHHHHHHHHHHHHHHhcccCCHHHHHH
Q 022272 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILE 105 (300)
Q Consensus 73 ~~~Msif~Rl~~li~a~~n~~ld~~EDP~~mLe 105 (300)
-+.|+||.++..+ ...+.++-..+.||.-.-|
T Consensus 10 ~~~~~~~~~l~~~-~~r~~el~~~l~~p~~~~d 41 (371)
T 1zbt_A 10 HHHMNIYDQLQAV-EDRYEELGELLSDPDVVSD 41 (371)
T ss_dssp -CCCCHHHHHHHH-HHHHHHC------------
T ss_pred hhhhhHHhhHHHH-HHHHHHHHHHhcCCcchhC
Confidence 3579999999865 4677888888888865444
No 66
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=59.85 E-value=46 Score=24.80 Aligned_cols=28 Identities=7% Similarity=0.226 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
.+++.....++.|+..|...+.+|.+++
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444443
No 67
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=59.62 E-value=29 Score=25.37 Aligned_cols=47 Identities=6% Similarity=-0.024 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
|...+|.+++=.+..++++...+..-...|..|+.++..+..+...+
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444444444444444444444444433
No 68
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=59.12 E-value=48 Score=24.00 Aligned_cols=14 Identities=21% Similarity=0.397 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 022272 199 LLESKIQEARSKKD 212 (300)
Q Consensus 199 ~Le~ki~e~k~k~~ 212 (300)
.|..||..++..++
T Consensus 45 ~L~kKiq~lE~eld 58 (81)
T 1ic2_A 45 ALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 69
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=58.51 E-value=43 Score=26.00 Aligned_cols=48 Identities=8% Similarity=0.192 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Aka 223 (300)
+..+++++.+.+..+..|..++..++..++.++.+|+-+-...+.-..
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888888888888888888888888888887766665433
No 70
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.32 E-value=25 Score=23.84 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 192 NLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 192 ~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
.|+.....|+.++.+++.+...++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 71
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=56.89 E-value=37 Score=31.39 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
..++..+...+.++..++..+..++..|.+|+.+|.+++.
T Consensus 15 ~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 15 RILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444443
No 72
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=54.58 E-value=80 Score=30.82 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 022272 129 QKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (300)
Q Consensus 129 ~k~le~k~~~~~~~i~~~e~rA~~AL~~G~ 158 (300)
.+.+..++++++++..........+...|+
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~ 71 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKE 71 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 344444444555554444444444444554
No 73
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=54.38 E-value=63 Score=23.85 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 186 QKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 186 ~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+..+++.|+..+..|.-.+++...+...++
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 74
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=53.60 E-value=1.4e+02 Score=28.39 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 174 ~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
+++..++..+..+..++..|+..+.....+|.+++.....|..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 91 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555556666566666666666665555543
No 75
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=52.49 E-value=78 Score=24.39 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAE 140 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~ 140 (300)
|...+|...+++-..+...++.++.++.++.
T Consensus 12 E~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 12 EVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677776666666666666666655
No 76
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.15 E-value=33 Score=24.61 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
+..+..|+.++..++.....+......|...|..+..+...
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555554443
No 77
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=51.05 E-value=1.1e+02 Score=27.31 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=33.2
Q ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 154 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 154 L~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
+-..+||+|.-.|.++.......++++-.++..-.+++.+...+..|...|...+
T Consensus 193 lLddDeDm~~myLT~k~~~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TE 247 (261)
T 3rkg_A 193 LLENDDDLANMYLTVKKSPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTE 247 (261)
T ss_dssp HHTCHHHHHHTCCSSCCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHhhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568899999999876544444455555555555555555555555555554443
No 78
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=50.88 E-value=1.2e+02 Score=25.95 Aligned_cols=73 Identities=14% Similarity=0.295 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Q 022272 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (300)
Q Consensus 98 EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (300)
.||+-++++ .+..+.|..+... ..+..-..+++..++++......++..|+-+-|...+.+..-+.+-..
T Consensus 129 ~d~~fLme~--me~~E~le~~~~~--------~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~ 198 (207)
T 3bvo_A 129 MDRQFLIEI--MEINEKLAEAESE--------AAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEE 198 (207)
T ss_dssp SCHHHHHHH--HHHHHHHHHCCSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH--HHHHHHHHHccCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 356544443 3444555544321 124444455666667777777888889999989888888777665444
Q ss_pred HHH
Q 022272 178 ALK 180 (300)
Q Consensus 178 ~le 180 (300)
.++
T Consensus 199 ~i~ 201 (207)
T 3bvo_A 199 KIK 201 (207)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 79
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.24 E-value=27 Score=23.60 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 175 NANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (300)
Q Consensus 175 ~~~~le~ql~~~~~~v~~L~~~l~~Le~ki 204 (300)
.++.|+.+.+.++..+..|...+.++++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 80
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=50.09 E-value=10 Score=35.22 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 166 L~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
|.++..+|..+..++.++. .|+..+..++.+|.+++.+...|.
T Consensus 3 ~~~~~~lE~~Il~~~~~i~-------~L~~~l~~~~~ki~~L~~~i~~l~ 45 (319)
T 1fzc_C 3 LEEIMKYEASILTHDSSIR-------YLQEIYNSNNQKIVNLKEKVAQLE 45 (319)
T ss_dssp -------CTTTTTHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444444444 444444445555555544444443
No 81
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=49.74 E-value=75 Score=23.41 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (300)
Q Consensus 117 kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~ 196 (300)
..|..+-.+....-++.-+++.++..+++|..+-..- +..+...|+.+..++..++...-.-
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E------------~~~R~~~E~d~~~LrkdvD~a~l~r------ 65 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE------------MLQREEAENTLQSFRQDVDNASLAR------ 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHTTHHHHHHHH------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhHHHHHHHH------
Confidence 3444444445555666666777777776666554321 2223344555555555555444443
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022272 197 TRLLESKIQEARSKKDTL 214 (300)
Q Consensus 197 l~~Le~ki~e~k~k~~~L 214 (300)
..|+.+++.++.++.-|
T Consensus 66 -~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 66 -LDLERKVESLQEEIAFL 82 (86)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 44555555555555444
No 82
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.36 E-value=48 Score=23.98 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRL 199 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~ 199 (300)
+..+..++.++++....+..|+..+.+
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 83
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=49.26 E-value=40 Score=30.19 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022272 105 EQAVLEMNDDLVKMRQATAQ 124 (300)
Q Consensus 105 eQ~Ireme~~l~kar~alA~ 124 (300)
+..+.+++.++..++..+..
T Consensus 68 ~~~~~~~~a~l~~~~a~l~~ 87 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQRQQ 87 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444444433
No 84
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.16 E-value=1.1e+02 Score=29.36 Aligned_cols=32 Identities=9% Similarity=0.021 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 022272 127 ASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (300)
Q Consensus 127 A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~ 158 (300)
...+.+..++++++++.....++...+...|+
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~ 69 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGE 69 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34455555555666665555555555445553
No 85
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=49.13 E-value=60 Score=22.12 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022272 193 LVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 193 L~~~l~~Le~ki~e~k~k~~~ 213 (300)
|...-..|..+|..++.+...
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 86
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=48.95 E-value=22 Score=31.83 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 174 ~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
..+..++.+++.+......|...++.++.+|..++.+.+.|+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666666677777766666666554
No 87
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=48.82 E-value=94 Score=24.25 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 129 QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 129 ~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
.+.|..+...+..+++.|..+...+ +...-..+..|+.++.++...-+.|...+++|+.+=.++.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~---------------~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQ---------------YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 4556777888888888888776653 2233445666666766666666666666666666555555
Q ss_pred HHHH
Q 022272 209 SKKD 212 (300)
Q Consensus 209 ~k~~ 212 (300)
+...
T Consensus 70 R~~R 73 (111)
T 2v66_B 70 RAKR 73 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 88
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=48.79 E-value=25 Score=31.95 Aligned_cols=17 Identities=6% Similarity=0.048 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022272 106 QAVLEMNDDLVKMRQAT 122 (300)
Q Consensus 106 Q~Ireme~~l~kar~al 122 (300)
..+...+.+|..++..+
T Consensus 70 ~~l~~~~a~l~~~~a~l 86 (369)
T 4dk0_A 70 NTLNTRKAALASYQAQL 86 (369)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 89
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.47 E-value=49 Score=20.85 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 188 NVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 188 ~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
-.++..+.+|.+|+.++..++.++..|-
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888888888888877664
No 90
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.85 E-value=64 Score=22.32 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 188 NVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 188 ~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
..+..|+..-..|+.+|..++.+...|
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 91
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=45.72 E-value=92 Score=26.27 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=34.7
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (300)
Q Consensus 94 ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~ 142 (300)
+..+++|..++++.|..++..+.+....+..+...-.....++..+...
T Consensus 116 Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 116 LEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999888888887777766665555554444444444
No 92
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.09 E-value=69 Score=22.13 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
..++..++.++..-..|+..+..|+..+..++
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555554443
No 93
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=45.05 E-value=79 Score=22.32 Aligned_cols=34 Identities=6% Similarity=0.137 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
.+..+.......+...+..+.++...|+.++.++
T Consensus 39 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 39 DLSEAANRNNDALRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 94
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=44.19 E-value=59 Score=25.76 Aligned_cols=51 Identities=12% Similarity=0.016 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 182 (300)
Q Consensus 132 le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~q 182 (300)
+..++..+....+....+--.|...||.++-.+...++..+..+++.++..
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777888888788888888877766666655555555555544
No 95
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=44.19 E-value=61 Score=24.38 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 179 le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
|+.+......+++.|+.....+...+..++.
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 96
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=43.85 E-value=1.6e+02 Score=25.53 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
+..+..++..+...+..+..|+.++..++.++.....+...|.+
T Consensus 104 ~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 104 TKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 33444555555555555555555555566555555555555544
No 97
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=43.64 E-value=1.1e+02 Score=23.36 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 202 SKIQEARSKKDTLKARAQSAKTATKV 227 (300)
Q Consensus 202 ~ki~e~k~k~~~LkAr~~~Akaq~~v 227 (300)
.++++++.++..|....+-+..++.+
T Consensus 67 ~~v~elqgEI~~Lnq~Lqda~~~~~~ 92 (99)
T 3ni0_A 67 ARIKELENEVTKLNQELENLRIQKET 92 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555544
No 98
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=43.39 E-value=1.6e+02 Score=28.50 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHHHhcccCC
Q 022272 77 NLFDRLARVVKSYANAILSSFED 99 (300)
Q Consensus 77 sif~Rl~~li~a~~n~~ld~~ED 99 (300)
+++.+-.+=|+-.|+.+=+.+.|
T Consensus 54 glL~kqerdv~~rI~kLkn~L~~ 76 (491)
T 1m1j_A 54 GIIDDTDQNYSQRIDNIRQQLAD 76 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHH
Confidence 35666666666666665555443
No 99
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=43.07 E-value=1.4e+02 Score=24.78 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (300)
||.-++++ -+..+.|..+... ..+..-..+....+..+......++..++-+-|+..+.+..-+.+-...
T Consensus 100 d~~fLme~--me~rE~leea~~~--------~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ 169 (181)
T 3uo3_A 100 DPQLLLKV--LDIHDELSQMDDE--------AGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKA 169 (181)
T ss_dssp CHHHHHHH--HHHHHHHHHCCSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHH--HHHHHHHHhccCH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 56555443 2445555554321 1233444567788888888899999999999999888887776654444
Q ss_pred H
Q 022272 179 L 179 (300)
Q Consensus 179 l 179 (300)
+
T Consensus 170 i 170 (181)
T 3uo3_A 170 F 170 (181)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=42.95 E-value=1.2e+02 Score=23.91 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 122 TAQVLASQKRLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 122 lA~v~A~~k~le~k~~~~~~~i~~~e~r 149 (300)
.+.|+..-+.|+.+|..+..+-....++
T Consensus 4 a~~V~s~l~~LEaeyq~L~~kE~qrynq 31 (119)
T 2avr_X 4 AASLVGELQALDAEYQNLANQEEARFNE 31 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999888877666544
No 101
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=42.92 E-value=1.1e+02 Score=23.24 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 167 ~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
.+..-+..++..|+.....-...-+++......|..++..++++...|
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555444444555555555555555444444333
No 102
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=42.35 E-value=1.1e+02 Score=23.04 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (300)
Q Consensus 109 reme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~ 146 (300)
.+.-..+...+..+..+......++.++.++..-+.++
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554444433
No 103
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.55 E-value=80 Score=21.11 Aligned_cols=17 Identities=6% Similarity=-0.031 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022272 188 NVVNNLVSNTRLLESKI 204 (300)
Q Consensus 188 ~~v~~L~~~l~~Le~ki 204 (300)
.....++..+..+...+
T Consensus 26 ~~~~~~k~~~~~~~~~l 42 (60)
T 3htk_A 26 DEFLKAKEKINEIFEKL 42 (60)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 104
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=40.31 E-value=1.9e+02 Score=28.09 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022272 192 NLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 192 ~L~~~l~~Le~ki~e~k~k~ 211 (300)
.|+..+..++.++.+++.++
T Consensus 127 ~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 127 EIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 105
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=39.86 E-value=84 Score=22.60 Aligned_cols=9 Identities=11% Similarity=0.412 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 022272 202 SKIQEARSK 210 (300)
Q Consensus 202 ~ki~e~k~k 210 (300)
.++.+++.+
T Consensus 61 ~e~~~L~~~ 69 (83)
T 1nkp_B 61 QDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 106
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=39.85 E-value=39 Score=30.32 Aligned_cols=21 Identities=5% Similarity=0.234 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQK 130 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k 130 (300)
+++.++.+++..+..+.+...
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~ 86 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQ 86 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666555554444333
No 107
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=39.38 E-value=96 Score=26.35 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=40.5
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (300)
Q Consensus 94 ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~ 144 (300)
++++.||..++...|.=+=+.+..++..+.+...+-.+|.++.+...++.+
T Consensus 133 L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 133 LEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556789999999888888888888888888887777777777776666544
No 108
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=39.29 E-value=40 Score=33.48 Aligned_cols=16 Identities=6% Similarity=0.054 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 022272 78 LFDRLARVVKSYANAI 93 (300)
Q Consensus 78 if~Rl~~li~a~~n~~ 93 (300)
+-+.|+.++.++..=.
T Consensus 276 ~ak~i~~lc~~~H~ff 291 (575)
T 2i1j_A 276 VNKRILALCMGNHELY 291 (575)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3577888888875544
No 109
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=38.90 E-value=1.4e+02 Score=23.40 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
+..+..++..-...+.........|...-..|+.+|.++.
T Consensus 50 k~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~ 89 (129)
T 2fxo_A 50 KNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMN 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 110
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.85 E-value=1.6e+02 Score=24.18 Aligned_cols=7 Identities=14% Similarity=0.278 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 022272 173 ADNANAL 179 (300)
Q Consensus 173 e~~~~~l 179 (300)
+..++.|
T Consensus 85 e~ElEeL 91 (154)
T 2ocy_A 85 NKEVEDL 91 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 111
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=37.97 E-value=81 Score=23.69 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~ 205 (300)
..+|.....+..+++.+......+...+..++.+++
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444544444
No 112
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=37.73 E-value=81 Score=20.34 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 187 KNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 187 ~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
+..+..|.....+|+.+|..+.++=.+|
T Consensus 9 E~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3334444444444444444444443333
No 113
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=37.49 E-value=3.2e+02 Score=27.12 Aligned_cols=10 Identities=10% Similarity=0.328 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 022272 106 QAVLEMNDDL 115 (300)
Q Consensus 106 Q~Ireme~~l 115 (300)
+.+.++.+++
T Consensus 438 ~~~~~~~~~Y 447 (592)
T 1f5n_A 438 QKLQDLKKKY 447 (592)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 114
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.46 E-value=82 Score=20.33 Aligned_cols=26 Identities=15% Similarity=0.394 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 190 VNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+++....|.+.+.+|.+++.++..|.
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555443
No 115
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=37.38 E-value=21 Score=33.07 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 185 ~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+.+..|..+..++..|+..|..++.++..|+
T Consensus 8 ~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~ 38 (319)
T 1fzc_C 8 KYEASILTHDSSIRYLQEIYNSNNQKIVNLK 38 (319)
T ss_dssp --CTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555443
No 116
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=37.32 E-value=30 Score=31.42 Aligned_cols=20 Identities=20% Similarity=0.052 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQ 129 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~ 129 (300)
+.+.++..++..++.+.+..
T Consensus 67 ~~~~~l~~~~a~l~~~~a~l 86 (369)
T 4dk0_A 67 TQINTLNTRKAALASYQAQL 86 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46666666666655544433
No 117
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.08 E-value=1.5e+02 Score=23.27 Aligned_cols=19 Identities=11% Similarity=0.080 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022272 131 RLENKCKAAEQASEDWYRK 149 (300)
Q Consensus 131 ~le~k~~~~~~~i~~~e~r 149 (300)
+++.++..++.+.+.....
T Consensus 44 ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 44 QLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444433
No 118
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.93 E-value=88 Score=24.36 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhcCCCC--
Q 022272 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKV-----------------SEMLGNVNT-- 236 (300)
Q Consensus 176 ~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v-----------------~~~~~~~~~-- 236 (300)
++.+..++.+++..+..+..++..++..+.+++.=++.+..=.. +....+ +..+-.++.
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~--~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~ 80 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG--KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGV 80 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCE
Confidence 45566666666666777777777777777776666666553111 000000 000001121
Q ss_pred ---CcHHHHHHHHHHHHHhHHHHHHHhh
Q 022272 237 ---SSALSAFEKMEEKVLTMESQADSLN 261 (300)
Q Consensus 237 ---~~a~~~feR~eeki~~~ea~aeA~~ 261 (300)
-+..++.+-++.|+...+...+-+.
T Consensus 81 ~vE~~~~eA~~~l~~r~~~l~~~~~~l~ 108 (133)
T 1fxk_C 81 AIKKNFEDAMESIKSQKNELESTLQKMG 108 (133)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2677888888888888887765443
No 119
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=36.59 E-value=84 Score=23.04 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 190 VNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
=..|+..++.++..+++-+.+++.++.
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~ 48 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARA 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555554444444433
No 120
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.30 E-value=1.1e+02 Score=22.23 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022272 193 LVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 193 L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
|+.....+...++.++.+...|.
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 121
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=35.66 E-value=1.1e+02 Score=21.97 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 174 ~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
+.+..++..+......+..++.++..++.+|+.++
T Consensus 8 nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 8 NKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 34555666666666666666666666666665543
No 122
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.96 E-value=1.3e+02 Score=28.27 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
..++.++..++.+....+..+.+++..+.+++.++.+.+..+..|
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555544444
No 123
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=34.84 E-value=89 Score=19.97 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 190 VNNLVSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~~~L 214 (300)
...|+..++.++.++..++.++..|
T Consensus 22 laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666666666655544
No 124
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=34.52 E-value=1.3e+02 Score=22.24 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
..+-.+.++...+.....+..|...+..++.++.+++.++
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 125
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.41 E-value=1.1e+02 Score=20.68 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKV 227 (300)
Q Consensus 182 ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v 227 (300)
+++++...+..|...+..|...+..++.... .+...+++|-.++
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~--~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ--AAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhh
Confidence 4555555555555555555555555554333 3333344444333
No 126
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=34.31 E-value=75 Score=19.77 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 171 SYADNANALKAQLDQQKNVVNNLV 194 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~ 194 (300)
++++.++.|-..-..++..|..|+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444333333443333
No 127
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.56 E-value=1.4e+02 Score=21.71 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 102 KILEQAVLEMNDDLVKMRQATAQVLAS 128 (300)
Q Consensus 102 ~mLeQ~Ireme~~l~kar~alA~v~A~ 128 (300)
.-+...|-+++.+|.++|..++.....
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~E 55 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLRE 55 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 128
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=33.41 E-value=1.5e+02 Score=22.18 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQV 125 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v 125 (300)
++..+++++..-..+...+-.+
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~l 30 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDV 30 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 129
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=33.23 E-value=2e+02 Score=23.46 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Q 022272 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA-KTATKVSEMLG 232 (300)
Q Consensus 171 ~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~A-kaq~~v~~~~~ 232 (300)
.+++....|++++..-...+..|..-....+..+.+.+...+.++...... ....+++..+.
T Consensus 83 ~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 83 LLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445555555555555555444444444544444444444443222 23334444443
No 130
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.13 E-value=64 Score=26.11 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 175 NANALKAQLDQQKNVVNNLVSN 196 (300)
Q Consensus 175 ~~~~le~ql~~~~~~v~~L~~~ 196 (300)
....|+.++......++.+..+
T Consensus 104 r~~~L~~ql~e~e~ll~~lq~Q 125 (135)
T 2e7s_A 104 LNKRLTEQLREKDMLLDTLTLQ 125 (135)
T ss_dssp HHHHHHHTTTHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 131
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=32.99 E-value=1.3e+02 Score=23.91 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Q 022272 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL 166 (300)
Q Consensus 131 ~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL 166 (300)
-++.++..++.++.+++..+...-..+.++.-.+.+
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~ 45 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGF 45 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 456777778888888777666544444444444443
No 132
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=32.43 E-value=1e+02 Score=19.88 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 189 VVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (300)
Q Consensus 189 ~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (300)
.+..|+...+.|+.+..+++.+..+|...-+
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4566777777777777777777777765433
No 133
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=31.77 E-value=66 Score=18.12 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 022272 139 AEQASEDWYRKAQLALQKG 157 (300)
Q Consensus 139 ~~~~i~~~e~rA~~AL~~G 157 (300)
-...|..|+.+.--||+.|
T Consensus 8 drrriarwekriayalkng 26 (26)
T 1hji_B 8 DRRRIARWEKRIAYALKNG 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHhcC
Confidence 3467889999999998876
No 134
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=31.65 E-value=1.1e+02 Score=26.25 Aligned_cols=6 Identities=0% Similarity=0.191 Sum_probs=2.8
Q ss_pred ccCCHH
Q 022272 96 SFEDPE 101 (300)
Q Consensus 96 ~~EDP~ 101 (300)
.+++|.
T Consensus 52 ~ld~~~ 57 (277)
T 2f1m_A 52 QIDPAT 57 (277)
T ss_dssp EECCHH
T ss_pred EECcHH
Confidence 444553
No 135
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.51 E-value=1.8e+02 Score=22.45 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTR-------------------LLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~-------------------~Le~ki~e~k~k~~~LkAr 217 (300)
..++++.+...+.|+....+.+..-+..+. .++.||.++++.+....+.
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va~ 104 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVAA 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 136
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.28 E-value=1.5e+02 Score=21.59 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (300)
Q Consensus 172 ~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (300)
+.+.+...+++++.+...-+.|+..-.+|+.-|.+++++...+......
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~ 64 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIEL 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777777777666666544433
No 137
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=31.26 E-value=3.5e+02 Score=26.17 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 190 VNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 190 v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
+..|+..+..++.++.++..++..
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554443
No 138
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.13 E-value=1.5e+02 Score=21.58 Aligned_cols=12 Identities=8% Similarity=0.063 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 022272 171 SYADNANALKAQ 182 (300)
Q Consensus 171 ~~e~~~~~le~q 182 (300)
.++..++.|...
T Consensus 67 ~Le~EIatYRkL 78 (86)
T 1x8y_A 67 ALDMEIHAYRKL 78 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 333334444333
No 139
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=30.94 E-value=2.6e+02 Score=24.19 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 022272 239 ALSAFEKMEEKVLTMESQAD 258 (300)
Q Consensus 239 a~~~feR~eeki~~~ea~ae 258 (300)
.....+.++.-+.......+
T Consensus 248 ~~~~~~~~~~~i~~id~~~D 267 (290)
T 3i2w_A 248 LPQIYEEFSHTINNADQQKD 267 (290)
T ss_dssp HHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHhcChHHH
Confidence 34566777776666555444
No 140
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=30.85 E-value=2.7e+02 Score=24.37 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 109 reme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A 153 (300)
.++++.+.++...+......-....++|...-.+++....+...+
T Consensus 139 k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~ 183 (312)
T 3abh_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANS 183 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666777777666666677777777766666665554443
No 141
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.77 E-value=2.3e+02 Score=23.57 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 022272 199 LLESKIQEARSKKD 212 (300)
Q Consensus 199 ~Le~ki~e~k~k~~ 212 (300)
++..+|.+++.++.
T Consensus 117 aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 117 AVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 142
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=30.62 E-value=1.2e+02 Score=20.01 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (300)
Q Consensus 170 ~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ 202 (300)
..+++.+..++..-..++..+..|+.++..|+.
T Consensus 20 aklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666665555555544
No 143
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.26 E-value=1.3e+02 Score=20.55 Aligned_cols=15 Identities=20% Similarity=0.353 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 022272 199 LLESKIQEARSKKDT 213 (300)
Q Consensus 199 ~Le~ki~e~k~k~~~ 213 (300)
.|...|..++.+...
T Consensus 41 ~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 41 ALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 144
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.02 E-value=1.1e+02 Score=22.21 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
.|-.+.+.+...+..+.....+++.++.+++
T Consensus 41 ELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 41 ELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444443
No 145
>3abd_X REV3, HREV3, DNA polymerase zeta catalytic subunit; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_Z*
Probab=29.41 E-value=16 Score=24.26 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=3.4
Q ss_pred ccccCccceee
Q 022272 40 SFFNGGVGALK 50 (300)
Q Consensus 40 ~~~~~~~~~~~ 50 (300)
+|-++++..|+
T Consensus 23 ~~t~~~~~ILK 33 (52)
T 3abd_X 23 SFTPRTANILK 33 (52)
T ss_dssp -----CTTEEE
T ss_pred CCCCCcccccc
Confidence 44444466655
No 146
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=29.39 E-value=37 Score=22.06 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Q 022272 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLE 110 (300)
Q Consensus 77 sif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ire 110 (300)
++|.|+++++++..+.+ ..+--|.-++---|..
T Consensus 2 ~mWErVk~ilks~l~~a-S~iPGPVG~~asGi~g 34 (44)
T 1nov_D 2 TFWERVRSILKSGLNFA-STIPGPVGVAATGIKG 34 (44)
T ss_pred cHHHHHHHHHHHHHHHH-hcCCCchhHHHHhHHH
Confidence 58999999999987654 4555676555544433
No 147
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=29.10 E-value=61 Score=29.89 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 022272 194 VSNTRLLESKIQEAR 208 (300)
Q Consensus 194 ~~~l~~Le~ki~e~k 208 (300)
+..+..|+.||..++
T Consensus 34 q~~le~L~~KI~~LE 48 (323)
T 1lwu_B 34 KSVLEHLRAKMQRME 48 (323)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334444333
No 148
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=28.57 E-value=2.6e+02 Score=23.33 Aligned_cols=49 Identities=8% Similarity=0.207 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 167 ~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
..+.+++..+..|...++.......++....+.|..+|..++-+...+-
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445556666666666666666666666666666666666665555443
No 149
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=28.28 E-value=60 Score=26.12 Aligned_cols=41 Identities=5% Similarity=0.103 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 022272 107 AVLEMNDDLVKMRQATAQVLASQKRL---ENKCKAAEQASEDWY 147 (300)
Q Consensus 107 ~Ireme~~l~kar~alA~v~A~~k~l---e~k~~~~~~~i~~~e 147 (300)
.+..+.+.+.+.+..+..+......+ +.++.++...++.++
T Consensus 10 ~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~ 53 (151)
T 2zdi_C 10 ELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLK 53 (151)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666 666666666665544
No 150
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.19 E-value=2e+02 Score=27.09 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
.++.++..+++....++..+.+++..++++
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKEL 36 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 151
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=28.10 E-value=1.3e+02 Score=26.43 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k 210 (300)
..+.|+.+..++..+++..+.....+..+.+++.+++++.+.
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666655555555555555555555443
No 152
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.01 E-value=2.2e+02 Score=22.32 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (300)
Q Consensus 181 ~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k 210 (300)
.-.......+.+|+..+..|+..+.+.+..
T Consensus 33 ~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 33 NMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666665544
No 153
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=27.90 E-value=40 Score=21.86 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 022272 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111 (300)
Q Consensus 77 sif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Irem 111 (300)
++|.|+++++++..+.+ .-+--|.-++---|..+
T Consensus 2 ~~WErVk~ilks~l~a~-S~iPGPVG~~asGi~~l 35 (44)
T 2z2q_B 2 SMWERVKSIIKSSLAAA-SNIPGPIGVAASGISGL 35 (44)
T ss_pred cHHHHHHHHHHHHHHHH-hcCCCchhHHHHhHHHH
Confidence 58999999999987754 45556765555444433
No 154
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=27.87 E-value=1.9e+02 Score=21.66 Aligned_cols=23 Identities=4% Similarity=0.249 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022272 199 LLESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 199 ~Le~ki~e~k~k~~~LkAr~~~A 221 (300)
.+..||..++..++.|+...+.+
T Consensus 71 ~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777665543
No 155
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=27.61 E-value=2.5e+02 Score=22.93 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Q 022272 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (300)
Q Consensus 97 ~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 175 (300)
..||.-++++ -+..+.|..+... .....+..-..+....+..+......++..++-+-|...+.+..-+.+-
T Consensus 86 ~~d~~fLme~--me~rE~lee~~~~-----~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~kl 157 (171)
T 1fpo_A 86 VRDTAFLMEQ--LELREELDEIEQA-----KDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKL 157 (171)
T ss_dssp CSCHHHHHHH--HHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH--HHHHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHH
Confidence 3478665543 3444555555432 1112244445666677777788888899999988888888776655543
No 156
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=27.19 E-value=2.6e+02 Score=22.90 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 186 (300)
Q Consensus 132 le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~ 186 (300)
+.+++...-..+.+--..|..|+..++.++|.+.... ++.+..++..+...
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~----d~~iD~l~~~I~~~ 62 (216)
T 2i0m_A 12 LEQSFLGLGQLVLETASKALLALASKDKEMAELIINK----DHAINQGQSAIELT 62 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHh----HHHHHHHHHHHHHH
Confidence 3445555566666677788888999998888777554 55555555555443
No 157
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.01 E-value=2.2e+02 Score=21.97 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
+.++..++..++.....+..++.++..+...|+++.
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555556666666666666555554
No 158
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.96 E-value=1.2e+02 Score=21.81 Aligned_cols=18 Identities=22% Similarity=0.480 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022272 187 KNVVNNLVSNTRLLESKI 204 (300)
Q Consensus 187 ~~~v~~L~~~l~~Le~ki 204 (300)
...++.|+.....|+.+|
T Consensus 60 ~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 60 QQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444433
No 159
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=26.75 E-value=4.2e+02 Score=25.15 Aligned_cols=97 Identities=23% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH-
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL- 179 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l- 179 (300)
..+|.-.+.+....|.++ +.++.--..+.++.+-+.+..... |..+-..----|-|+|-+.+|+..+++-.++..|
T Consensus 389 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (494)
T 1y4c_A 389 EELLKIALQEAQKTLQQA-QELAKKGGGEEQLKRALKRADRNL--WAAQELAKKGGGGEELLKQALQQAQQLLRQAQELA 465 (494)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHSSCCHHHHHHHHHHHHHHH--HHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHccCcHHHHHHHHHhhhhhh--HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHH
Q 022272 180 -----KAQLDQQKNVVNNLVSNTRLL 200 (300)
Q Consensus 180 -----e~ql~~~~~~v~~L~~~l~~L 200 (300)
+..+.+.-.+..+|-.+.++|
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (494)
T 1y4c_A 466 KKGGGEELLKQALQQAQQLLQQAQEL 491 (494)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHH
No 160
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=26.69 E-value=1.9e+02 Score=21.19 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
+..+..++..+........+.......|+.+...+-.++..|..+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555555543
No 161
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.50 E-value=1.3e+02 Score=19.35 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 182 QLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 182 ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
.++.....+++-+..|..++.++.++
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 162
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.48 E-value=1.5e+02 Score=25.29 Aligned_cols=6 Identities=33% Similarity=0.462 Sum_probs=2.4
Q ss_pred HHHHHH
Q 022272 284 LANLKK 289 (300)
Q Consensus 284 LarLKa 289 (300)
+..|..
T Consensus 146 ~r~L~~ 151 (190)
T 4emc_A 146 LYSLQS 151 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333433
No 163
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=26.45 E-value=4.6e+02 Score=25.56 Aligned_cols=19 Identities=5% Similarity=0.071 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022272 196 NTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 196 ~l~~Le~ki~e~k~k~~~L 214 (300)
.+.+-+..+.+...++..+
T Consensus 74 dlakY~~~~AeY~~kl~aY 92 (497)
T 3iox_A 74 DLAKYQKDLADYPVKLKAY 92 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433
No 164
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.05 E-value=2e+02 Score=21.37 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~ 211 (300)
..++...+.....+..|...+..++.++.+++.++
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 165
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=26.01 E-value=2.9e+02 Score=23.10 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 186 (300)
Q Consensus 132 le~k~~~~~~~i~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~ 186 (300)
+.+.+...-..+.+--..|..|+..++.++|.+.... ++.+..++..+...
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~----d~~iD~l~~~I~~~ 62 (235)
T 1sum_B 12 FKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIAD----EEVVDQMEVEIQEK 62 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHh----HHHHHHHHHHHHHH
Confidence 3444555555666666777788888888877766554 45555555554443
No 166
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.92 E-value=1.7e+02 Score=20.45 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 022272 199 LLESKIQEARSKKDTL 214 (300)
Q Consensus 199 ~Le~ki~e~k~k~~~L 214 (300)
..+..|.++++....|
T Consensus 53 ~~k~Ei~elrr~iq~L 68 (77)
T 3trt_A 53 QAKQESTEYRRQVQSL 68 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 167
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.82 E-value=1.7e+02 Score=23.38 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k 208 (300)
+..+..++..++.....+..++.++..++..|+++.
T Consensus 104 ~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 104 EKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555554443
No 168
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=25.56 E-value=1.7e+02 Score=20.28 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 168 rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
+..+..+-+..-++-++++-+.-..|...++.++.+|..+..+-..|.
T Consensus 14 eylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 14 EYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 334444555566666777777777777888888888888777655443
No 169
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=25.17 E-value=2.3e+02 Score=21.64 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (300)
Q Consensus 167 ~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~Lk 215 (300)
++...++..+..++..-..+.......-..++.|+.+++.++.+-..|.
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3334556666666655555555555545555555555555555444443
No 170
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=25.12 E-value=1.3e+02 Score=24.08 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 185 QQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 185 ~~~~~v~~L~~~l~~Le~ki~e~k~k~~~ 213 (300)
+....+++|...+.+++.++++++.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666555443
No 171
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=24.88 E-value=2.4e+02 Score=21.77 Aligned_cols=27 Identities=0% Similarity=-0.109 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 105 EQAVLEMNDDLVKMRQATAQVLASQKR 131 (300)
Q Consensus 105 eQ~Ireme~~l~kar~alA~v~A~~k~ 131 (300)
.+.|..++..+...+..+.......+.
T Consensus 87 ~~~l~~~~~~~e~~r~~l~~a~~~~k~ 113 (150)
T 3ajw_A 87 RLQLTQWTQKVDLALKSWREKKQRLQA 113 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333333
No 172
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.75 E-value=2.2e+02 Score=21.21 Aligned_cols=37 Identities=5% Similarity=0.127 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (300)
Q Consensus 115 l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~ 151 (300)
+..+...+-.+...-..+...+..+..++..+.....
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444434444444444444444444444433
No 173
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.74 E-value=2.5e+02 Score=21.86 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLE 201 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le 201 (300)
..++..++..|..++...+..+..|+..+.+++
T Consensus 40 ~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q 72 (112)
T 1x79_B 40 SEDSSHQISALVLRAQASEILLEELQQGLSQAK 72 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 174
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=24.63 E-value=1.2e+02 Score=18.01 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 115 LVKMRQATAQVLASQKRLENKCKAAEQA 142 (300)
Q Consensus 115 l~kar~alA~v~A~~k~le~k~~~~~~~ 142 (300)
+.+....+|++.++.-++++++.+++.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4566777888888888888888777643
No 175
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=24.54 E-value=2.6e+02 Score=21.99 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 123 AQVLASQKRLENKCKAAEQASE 144 (300)
Q Consensus 123 A~v~A~~k~le~k~~~~~~~i~ 144 (300)
+.++..-..++.+|..+..+-.
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~ 26 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEE 26 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666555433
No 176
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=24.54 E-value=1.8e+02 Score=20.26 Aligned_cols=44 Identities=14% Similarity=0.282 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 105 eQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
|+.|.+=.+.|.+.-..+.++...+.++++.++-+..+-.+++.
T Consensus 4 D~~LveNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~ 47 (64)
T 3t97_C 4 DRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELED 47 (64)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888888888888888888777766666554
No 177
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.39 E-value=4.9e+02 Score=25.20 Aligned_cols=31 Identities=10% Similarity=0.152 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (300)
Q Consensus 125 v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~ 155 (300)
+=...+.+..++++++++.....+....+..
T Consensus 75 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~ 105 (501)
T 1wle_A 75 TWQELRQLREQIRSLEEEKEAVTEAVRALVV 105 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555555555555555444333
No 178
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=24.23 E-value=1.5e+02 Score=19.14 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 192 NLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 192 ~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
.|.+.-+.|+.+|..++.|++.|..
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554443
No 179
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=24.20 E-value=1.4e+02 Score=21.26 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022272 189 VVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 189 ~v~~L~~~l~~Le~ki~e~k 208 (300)
.|+.|+.++++|+..|..++
T Consensus 47 EV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 47 EVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46667777777777666543
No 180
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.08 E-value=1.6e+02 Score=19.51 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (300)
Q Consensus 101 ~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA 150 (300)
..-++..+.++...+..-+..+-.....-.++...+......|.+|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777888888888888888888886654
No 181
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.00 E-value=5e+02 Score=25.12 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=23.0
Q ss_pred CcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 157 GEEDLAREALKRRKS---YADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (300)
Q Consensus 157 G~EdLAreAL~rk~~---~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki 204 (300)
|+-++.++.+.++.. .-+.+-.+..++-.....++.|+.....+..+|
T Consensus 13 ~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 13 GDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp CCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777776642 123333444444444444444444444443333
No 182
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=23.61 E-value=71 Score=19.56 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.4
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHhh
Q 022272 237 SSALSAFEKMEEKVLTMESQADSLN 261 (300)
Q Consensus 237 ~~a~~~feR~eeki~~~ea~aeA~~ 261 (300)
.+...++-|+|.++..++-..+.+-
T Consensus 6 ~Sm~~Rl~kVE~qv~~md~KLd~l~ 30 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSIEHKLDLLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999998877654
No 183
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.51 E-value=2.3e+02 Score=20.98 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022272 194 VSNTRLLESKIQEARSKKDT 213 (300)
Q Consensus 194 ~~~l~~Le~ki~e~k~k~~~ 213 (300)
+..|..++..|...+.++..
T Consensus 57 ~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 57 AKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444433333333
No 184
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=23.19 E-value=2.7e+02 Score=21.70 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022272 194 VSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 194 ~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
+.-+..++.||.++++.+....+
T Consensus 68 ~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 68 EGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567777777666665554
No 185
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.63 E-value=2.3e+02 Score=20.67 Aligned_cols=65 Identities=5% Similarity=0.109 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 141 (300)
Q Consensus 77 sif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~ 141 (300)
||++=+.+-++-.+.+.++..-.-...|.+.=.|+...-.+...-+.+.-.++..++..++-+..
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655444444444444444444444444444433333333333333333
No 186
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=22.43 E-value=5.5e+02 Score=25.05 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022272 194 VSNTRLLESKIQEARSKKDTL 214 (300)
Q Consensus 194 ~~~l~~Le~ki~e~k~k~~~L 214 (300)
+..+...+.|+++.+++.+..
T Consensus 404 ~n~~a~~~~KiAE~KrK~dE~ 424 (602)
T 1cii_A 404 RNQLSGINQKIAEEKRKQDEL 424 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHhhhHH
Confidence 333444555555555555443
No 187
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=22.40 E-value=1.8e+02 Score=19.47 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022272 189 VVNNLVSNTRLLESKIQEAR 208 (300)
Q Consensus 189 ~v~~L~~~l~~Le~ki~e~k 208 (300)
.|+.|+.++++|+..|..++
T Consensus 29 EV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 29 EVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45666777777776666554
No 188
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.39 E-value=2.7e+02 Score=26.29 Aligned_cols=32 Identities=3% Similarity=0.093 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki 204 (300)
+.++..++....+....+.++...+..++.++
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 189
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.30 E-value=4.5e+02 Score=24.66 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022272 193 LVSNTRLLESKIQEARSK 210 (300)
Q Consensus 193 L~~~l~~Le~ki~e~k~k 210 (300)
++..+..++.++.+++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ 93 (421)
T 1ses_A 76 LGEEAKRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444333333
No 190
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=22.17 E-value=4.7e+02 Score=24.17 Aligned_cols=48 Identities=13% Similarity=0.001 Sum_probs=30.1
Q ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 154 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE 201 (300)
Q Consensus 154 L~~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le 201 (300)
+.++.+++..+.-.-.+..++.+..|+.++......+-+=+..|.-|-
T Consensus 373 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (463)
T 2xz3_A 373 SHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWLY 420 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Confidence 333344444455555555677777777777777777777766665543
No 191
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=21.86 E-value=1.8e+02 Score=19.25 Aligned_cols=35 Identities=17% Similarity=0.034 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 173 e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
+.++..|+.-++++...|..|+..-.+++..|..+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 45566666666666666666666666665555444
No 192
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=21.84 E-value=1.1e+02 Score=28.99 Aligned_cols=30 Identities=7% Similarity=0.159 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022272 128 SQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (300)
Q Consensus 128 ~~k~le~k~~~~~~~i~~~e~rA~~AL~~G 157 (300)
..+.+..++++++++.....++...+...|
T Consensus 38 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~ 67 (425)
T 2dq3_A 38 RRREIIKRLEALRSERNKLSKEIGKLKREG 67 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTGGGSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344444445555555554444444333344
No 193
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.76 E-value=1.4e+02 Score=26.50 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 183 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (300)
Q Consensus 183 l~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr 217 (300)
+.+.+.++..|..+...|...+.+++++...|+..
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555444443
No 194
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.64 E-value=2e+02 Score=20.70 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022272 188 NVVNNLVSNTRLLESKI 204 (300)
Q Consensus 188 ~~v~~L~~~l~~Le~ki 204 (300)
...+.|+.....|..+|
T Consensus 61 ~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 61 HQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334333333343333
No 195
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.62 E-value=1.4e+02 Score=23.19 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022272 186 QKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 186 ~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
....+..|+..+..|+.++..+
T Consensus 94 e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555555555555544
No 196
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=21.08 E-value=2.3e+02 Score=22.28 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (300)
Q Consensus 104 LeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~A 153 (300)
|.-.|+..++.|..+++++-- .-..+..+++..|.+|..-++.|
T Consensus 12 L~~~i~~l~~~L~~lkqa~k~------~~~~~~~eL~~LI~KWr~asq~a 55 (122)
T 3viq_A 12 LEKEVRNLQEQLITAETARKV------EAKNEDKDLQTLIQKWKNAAQQA 55 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HhcCcHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444321 11223445666666776666554
No 197
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=21.01 E-value=4.5e+02 Score=23.47 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHh
Q 022272 238 SALSAFEKMEEKVLTMESQADSL 260 (300)
Q Consensus 238 ~a~~~feR~eeki~~~ea~aeA~ 260 (300)
.....++.|..-+.......+..
T Consensus 269 ~~~~~~~~l~~~i~~id~~~Di~ 291 (350)
T 3aco_A 269 GYKAIYHDLEQSIRAADAVEDLR 291 (350)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCHHHHHH
Confidence 34556777877777766665543
No 198
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=21.00 E-value=1.1e+02 Score=22.17 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 188 NVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (300)
Q Consensus 188 ~~v~~L~~~l~~Le~ki~e~k~k~~~LkA 216 (300)
+.++-|++.|.+|+.++.+++.+-..|+.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888777774
No 199
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=20.94 E-value=2.2e+02 Score=19.98 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 180 e~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (300)
+.-++...+.+.+|+.+.-...+||.+.+++...|.=|.-..
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLkv 50 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQV 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344566677777788888888888888888888877664433
No 200
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=20.87 E-value=2.6e+02 Score=20.77 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 99 DPEKILEQAVLEMNDDLVKMRQATAQV-----LASQKRLENKCKAAEQASEDWYRKA 150 (300)
Q Consensus 99 DP~~mLeQ~Ireme~~l~kar~alA~v-----~A~~k~le~k~~~~~~~i~~~e~rA 150 (300)
|| +.+.-.|..++|..++.-+... ....+.++.-+..++..+.++.+-.
T Consensus 6 DP---F~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI 59 (95)
T 2c5k_T 6 DP---FQQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSI 59 (95)
T ss_dssp CH---HHHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc---HHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 3333446666666666554320 1222444444444555554444433
No 201
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=20.84 E-value=3.7e+02 Score=22.50 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=5.3
Q ss_pred HHHHHHHHHhcc
Q 022272 85 VVKSYANAILSS 96 (300)
Q Consensus 85 li~a~~n~~ld~ 96 (300)
++-|++-.+++.
T Consensus 56 LLLGnL~~IlG~ 67 (201)
T 3u0c_A 56 LLIGNLIQILGE 67 (201)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHhcc
Confidence 334444444443
No 202
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.78 E-value=2.7e+02 Score=20.77 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (300)
Q Consensus 110 eme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~ 148 (300)
.++..|..++..-+.++..-..++++-..+..++...+.
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~ 46 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQA 46 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344445555555444444444444444444444444433
No 203
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.70 E-value=2e+02 Score=19.34 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (300)
Q Consensus 177 ~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~ 209 (300)
..++..++.++..-..|...+..|+..+..++.
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544
No 204
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=20.61 E-value=5.5e+02 Score=24.35 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (300)
Q Consensus 165 AL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k 210 (300)
-++++..++..+.....++..++..+......|..|+.++.++..+
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666666666666666666666554
No 205
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.44 E-value=2.1e+02 Score=19.38 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (300)
Q Consensus 178 ~le~ql~~~~~~v~~L~~~l~~Le~ki~e~ 207 (300)
.|+..+..++..-..|...+..|+..+..+
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333
No 206
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=20.02 E-value=4.3e+02 Score=22.87 Aligned_cols=53 Identities=9% Similarity=0.183 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (300)
Q Consensus 169 k~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (300)
..++|.++..++..++..+..+..-...|..++.+|...+.+...|+.+....
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~l 131 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSAL 131 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhh
Confidence 45678888888888888888888888888888888888888888888765543
Done!