Query 022273
Match_columns 300
No_of_seqs 68 out of 70
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 16:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jx3_A Protein DEK; alpha heli 73.8 10 0.00035 31.4 7.1 94 60-177 14-109 (131)
2 1kdx_B CREB; complex (transcri 34.9 19 0.00064 23.4 1.7 13 138-150 12-24 (28)
3 1oey_A P67-PHOX, neutrophil cy 19.7 45 0.0015 25.8 1.7 20 137-156 21-40 (83)
4 2vzs_A CSXA, EXO-beta-D-glucos 15.6 51 0.0017 34.8 1.4 37 118-155 374-411 (1032)
5 1rp3_A RNA polymerase sigma fa 15.3 2.9E+02 0.0098 22.0 5.6 37 141-177 20-56 (239)
6 1abv_A Delta subunit of the F1 15.1 1.9E+02 0.0065 22.3 4.3 28 111-138 82-109 (134)
7 2do9_A NALP10, nacht-, LRR- an 13.5 2.1E+02 0.007 22.9 4.2 25 61-85 18-42 (115)
8 4dnd_A Syntaxin-10, SYN10; str 13.5 1.1E+02 0.0036 25.1 2.6 54 60-125 69-122 (130)
9 2xi8_A Putative transcription 13.5 1.8E+02 0.0062 18.5 3.3 25 132-156 32-56 (66)
10 1x1f_A Signal-transducing adap 13.1 89 0.0031 25.5 2.0 51 103-153 91-141 (149)
No 1
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=73.82 E-value=10 Score=31.43 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=57.9
Q ss_pred ChHHHHHHHhhChHHHHHHHHHhcCCCCCCc--cchhhcccCCcchhHHhhhhHHHHHHHHHHHHHHhhhccchhhhhcC
Q 022273 60 DPELRSVLELATDSELYELERILFGPSYFSP--LLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRG 137 (300)
Q Consensus 60 ddELr~~LELATdEEL~eLt~ILf~~s~fsP--LLkSi~kr~~~Dy~~i~~~~q~R~~~i~~IEsRFqfLAADs~svLRG 137 (300)
.|.....+...+-++|..|.+|||++. ... +-++|..=.|..+. .++++++.-.+.|+.
T Consensus 14 Ip~V~~~i~k~k~d~Lk~LH~ilfgr~-Gk~~~~KknI~~FsGF~~~---~~~~~~~k~~e~l~K--------------- 74 (131)
T 2jx3_A 14 IERIHFFLSKKKTDELRNLHKLLYNRP-GTVSSLKKNVGQFSGFPFE---KGSVQYKKKEEMLKK--------------- 74 (131)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTSSSC-CCSHHHHHHHHTSSCSSCC---CSSHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHcccCHHHHHHHHHHHcCCC-ChHhHHHHHHHhcCCCCCC---ccHHHHHHHHHHHHc---------------
Confidence 466777788888889999999999886 333 12222211122222 223333333333321
Q ss_pred CCchHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 022273 138 WRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (300)
Q Consensus 138 ~~vsYReVLldVckkLkV~~s~klsT~dLEaEIFLhLL~~ 177 (300)
....-|.++|+=|+|+++. +.+||-+.|+-.|+.=
T Consensus 75 ---~~~~~L~~~c~iL~l~~~g--~keelv~ril~FL~~P 109 (131)
T 2jx3_A 75 ---FRNAMLKSICEVLDLERSG--VNSELVKRILNFLMHP 109 (131)
T ss_dssp ---HHHHHHHHHHHTTTCCSCS--CHHHHHHHHHHTTTSC
T ss_pred ---cCHHHHHHHHHHHCCCCCC--cHHHHHHHHHHHHhCc
Confidence 2346788999999999984 5788888777666543
No 2
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=34.85 E-value=19 Score=23.37 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=10.9
Q ss_pred CCchHHHHHHHHH
Q 022273 138 WRPSYRNVLLAVR 150 (300)
Q Consensus 138 ~~vsYReVLldVc 150 (300)
++||||.||-+..
T Consensus 12 rrpSYrkIlndls 24 (28)
T 1kdx_B 12 RRPSYRKILNDLS 24 (28)
T ss_dssp TSTHHHHHHHHHH
T ss_pred cCchHHHHHHhhc
Confidence 5899999998764
No 3
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=19.65 E-value=45 Score=25.83 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=18.6
Q ss_pred CCCchHHHHHHHHHhhcCCC
Q 022273 137 GWRPSYRNVLLAVRKNLNIP 156 (300)
Q Consensus 137 G~~vsYReVLldVckkLkV~ 156 (300)
.++.+|+++.-.||+||+++
T Consensus 21 p~~~~y~~L~~~l~~kL~l~ 40 (83)
T 1oey_A 21 QPGLPYSQVRDMVSKKLELR 40 (83)
T ss_dssp CTTCCHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 46999999999999999997
No 4
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A*
Probab=15.57 E-value=51 Score=34.79 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=29.1
Q ss_pred HHHHHHHhhhccchhhhhc-CCCchHHHHHHHHHhhcCC
Q 022273 118 ASLESRFLFLAADARSTLR-GWRPSYRNVLLAVRKNLNI 155 (300)
Q Consensus 118 ~~IEsRFqfLAADs~svLR-G~~vsYReVLldVckkLkV 155 (300)
+.++..|+.+-.=++|.+| |+.| ..+-.++.||+|||
T Consensus 374 e~~~~dl~~~k~~g~N~iR~~h~~-~~~~fydlcDelGi 411 (1032)
T 2vzs_A 374 TAAADKLKYVLNLGLNTVRLEGHI-EPDEFFDIADDLGV 411 (1032)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCC-CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCEEECCCCC-CcHHHHHHHHHCCC
Confidence 3455666666666689999 5677 89999999999998
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=15.29 E-value=2.9e+02 Score=22.01 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 022273 141 SYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (300)
Q Consensus 141 sYReVLldVckkLkV~~s~klsT~dLEaEIFLhLL~~ 177 (300)
.|+..+..+|.++.-.+......+||-+|.|+.+++.
T Consensus 20 ~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~ 56 (239)
T 1rp3_A 20 KYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKA 56 (239)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3566666677776444466778999999999999987
No 6
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=15.09 E-value=1.9e+02 Score=22.26 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhhcCC
Q 022273 111 EEREDFIASLESRFLFLAADARSTLRGW 138 (300)
Q Consensus 111 q~R~~~i~~IEsRFqfLAADs~svLRG~ 138 (300)
.+|-..+..|-..|.-+.+....+..+.
T Consensus 82 ~~Rl~~l~~I~~~f~~l~~~~~~~~~a~ 109 (134)
T 1abv_A 82 NGRLNALPDVLEQFIHLRAVSEATAEVD 109 (134)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHC----
T ss_pred CCcHHHHHHHHHHHHHHHHHHCCeeEEE
Confidence 3344456677777777777666666653
No 7
>2do9_A NALP10, nacht-, LRR- and PYD-containing protein 10; apoptosis, inflammation, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=13.54 E-value=2.1e+02 Score=22.89 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=22.1
Q ss_pred hHHHHHHHhhChHHHHHHHHHhcCC
Q 022273 61 PELRSVLELATDSELYELERILFGP 85 (300)
Q Consensus 61 dELr~~LELATdEEL~eLt~ILf~~ 85 (300)
+-|...||.-+++||..|-..|-..
T Consensus 18 ~~Ll~~Le~L~~eElkkFK~~L~~~ 42 (115)
T 2do9_A 18 EALLWALNDLEENSFKTLKFHLRDV 42 (115)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHccC
Confidence 6788999999999999999998643
No 8
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=13.52 E-value=1.1e+02 Score=25.12 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=31.8
Q ss_pred ChHHHHHHHhhChHHHHHHHHHhcCCCCCCccchhhcccCCcchhHHhhhhHHHHHHHHHHHHHHh
Q 022273 60 DPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFL 125 (300)
Q Consensus 60 ddELr~~LELATdEEL~eLt~ILf~~s~fsPLLkSi~kr~~~Dy~~i~~~~q~R~~~i~~IEsRFq 125 (300)
-.||+..|+-+ +++|.||.+-.-=-. -+| ..|.--......|++|+..+..++.
T Consensus 69 ~~EL~~~l~si-e~dLeDLe~sI~ivE-~np----------~kF~l~~~Ei~~Rr~fV~~~r~~I~ 122 (130)
T 4dnd_A 69 TNELRNGLRSI-EWDLEDLEETIGIVE-ANP----------GKFKLPAGDLQERKVFVERMREAVQ 122 (130)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHH-HCH----------HHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHH-hCH----------HhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34667777766 456777766543101 122 2232122347889999999988875
No 9
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=13.50 E-value=1.8e+02 Score=18.53 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=17.9
Q ss_pred hhhhcCCCchHHHHHHHHHhhcCCC
Q 022273 132 RSTLRGWRPSYRNVLLAVRKNLNIP 156 (300)
Q Consensus 132 ~svLRG~~vsYReVLldVckkLkV~ 156 (300)
....+|.+..-.+.+..+|+.++|+
T Consensus 32 ~~~e~g~~~~~~~~l~~i~~~l~~~ 56 (66)
T 2xi8_A 32 NGIEKNKYNPSLQLALKIAYYLNTP 56 (66)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHTTSC
T ss_pred HHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 3556776444556788999999986
No 10
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=13.05 E-value=89 Score=25.45 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=37.2
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHhhhccchhhhhcCCCchHHHHHHHHHhhc
Q 022273 103 YVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNL 153 (300)
Q Consensus 103 y~~i~~~~q~R~~~i~~IEsRFqfLAADs~svLRG~~vsYReVLldVckkL 153 (300)
|.......++|+.|+..|-.=...-.....+.+-|.-+.-+++|..+-++.
T Consensus 91 ~~f~A~s~ee~~eWi~aI~~v~~~~~p~~~~l~p~~~~~~~~~l~~~~~r~ 141 (149)
T 1x1f_A 91 VQLKTENTESGEEWRGFILTVTELSVPQNVSLLPGQVIKLHEVLEREKKRR 141 (149)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHHcccCCCccccCccchHHHHHHHHHHHHHH
Confidence 444567789999999999765554444456788888788888888776554
Done!