Query 022275
Match_columns 300
No_of_seqs 182 out of 1249
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 7E-75 1.5E-79 547.1 25.5 298 1-298 106-406 (408)
2 KOG2287 Galactosyltransferases 100.0 1.6E-57 3.4E-62 431.1 21.1 248 22-299 85-337 (349)
3 PLN03133 beta-1,3-galactosyltr 100.0 5E-57 1.1E-61 448.0 21.6 242 21-299 375-624 (636)
4 KOG2288 Galactosyltransferases 100.0 1E-56 2.2E-61 396.0 17.7 264 28-299 8-272 (274)
5 PF01762 Galactosyl_T: Galacto 100.0 6.2E-51 1.3E-55 356.8 17.5 191 45-243 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 7.1E-36 1.5E-40 278.7 17.0 196 24-237 73-308 (382)
7 PF02434 Fringe: Fringe-like; 99.8 3.2E-20 6.9E-25 169.0 12.0 191 31-248 6-208 (252)
8 KOG2246 Galactosyltransferases 99.7 1.2E-16 2.5E-21 152.1 15.3 173 24-243 84-269 (364)
9 PLN03153 hypothetical protein; 99.3 8.3E-11 1.8E-15 114.8 14.7 181 29-247 120-317 (537)
10 KOG3708 Uncharacterized conser 97.9 4.8E-05 1E-09 74.2 8.6 112 106-241 72-193 (681)
11 PF01755 Glyco_transf_25: Glyc 96.2 0.13 2.9E-06 44.5 12.6 93 35-144 4-101 (200)
12 PF13641 Glyco_tranf_2_3: Glyc 96.1 0.21 4.6E-06 43.4 13.9 185 31-237 1-197 (228)
13 TIGR03472 HpnI hopanoid biosyn 95.8 0.35 7.7E-06 46.3 15.2 190 30-237 40-240 (373)
14 TIGR03469 HonB hopene-associat 94.7 2 4.4E-05 41.3 16.4 191 30-236 39-248 (384)
15 PRK11204 N-glycosyltransferase 94.6 2.8 6.2E-05 40.4 17.4 192 28-242 51-254 (420)
16 cd04192 GT_2_like_e Subfamily 94.5 1.6 3.4E-05 37.5 13.8 155 70-232 29-190 (229)
17 cd02520 Glucosylceramide_synth 93.3 4.6 9.9E-05 34.4 15.9 132 70-237 31-164 (196)
18 PRK14583 hmsR N-glycosyltransf 93.2 8.2 0.00018 37.9 17.8 189 29-242 73-275 (444)
19 cd04186 GT_2_like_c Subfamily 93.2 3.6 7.9E-05 33.0 13.0 79 126-236 72-151 (166)
20 PF13506 Glyco_transf_21: Glyc 93.0 0.35 7.6E-06 41.5 6.8 121 114-240 17-144 (175)
21 cd02525 Succinoglycan_BP_ExoA 92.6 6.3 0.00014 34.2 16.3 158 68-237 30-195 (249)
22 cd06439 CESA_like_1 CESA_like_ 92.3 7.4 0.00016 34.2 15.3 184 30-237 28-216 (251)
23 cd06421 CESA_CelA_like CESA_Ce 92.2 3.5 7.6E-05 35.6 12.4 118 121-244 77-207 (234)
24 cd02510 pp-GalNAc-T pp-GalNAc- 91.8 10 0.00022 34.7 16.3 127 120-246 75-223 (299)
25 cd06532 Glyco_transf_25 Glycos 91.5 1.7 3.8E-05 35.1 8.9 117 35-217 2-119 (128)
26 PF00535 Glycos_transf_2: Glyc 91.1 4.7 0.0001 32.1 11.2 135 69-211 27-168 (169)
27 cd04196 GT_2_like_d Subfamily 90.6 9.6 0.00021 32.2 14.9 154 69-235 27-189 (214)
28 cd06423 CESA_like CESA_like is 90.4 7.1 0.00015 31.0 11.7 94 119-212 69-170 (180)
29 COG1215 Glycosyltransferases, 89.5 20 0.00044 34.3 16.2 191 30-243 53-260 (439)
30 cd04191 Glucan_BSP_ModH Glucan 88.4 9.7 0.00021 34.6 12.1 186 35-236 3-217 (254)
31 PF04646 DUF604: Protein of un 88.0 0.66 1.4E-05 42.3 4.1 51 197-247 12-66 (255)
32 PF13632 Glyco_trans_2_3: Glyc 87.3 3.2 6.9E-05 35.1 7.8 115 131-248 1-124 (193)
33 cd04185 GT_2_like_b Subfamily 83.4 26 0.00056 29.5 14.5 100 118-246 70-171 (202)
34 cd04187 DPM1_like_bac Bacteria 82.6 17 0.00036 30.2 10.0 135 69-215 29-166 (181)
35 cd06435 CESA_NdvC_like NdvC_li 81.6 34 0.00074 29.6 15.1 113 119-237 73-196 (236)
36 PRK05454 glucosyltransferase M 78.3 39 0.00084 35.5 12.8 206 25-242 118-350 (691)
37 cd04195 GT2_AmsE_like GT2_AmsE 77.6 41 0.00088 28.1 13.4 115 120-241 72-194 (201)
38 COG1216 Predicted glycosyltran 72.1 32 0.00069 31.8 9.5 137 97-236 55-206 (305)
39 cd06433 GT_2_WfgS_like WfgS an 72.0 54 0.0012 26.9 16.3 113 119-237 66-181 (202)
40 cd04179 DPM_DPG-synthase_like 68.7 62 0.0013 26.4 9.8 133 69-212 28-167 (185)
41 PF10111 Glyco_tranf_2_2: Glyc 68.0 97 0.0021 28.2 13.1 164 67-238 32-210 (281)
42 TIGR03111 glyc2_xrt_Gpos1 puta 67.7 1.3E+02 0.0028 29.5 14.8 199 30-246 48-265 (439)
43 cd06437 CESA_CaSu_A2 Cellulose 67.1 83 0.0018 27.1 16.3 33 120-152 79-111 (232)
44 PRK11234 nfrB bacteriophage N4 66.8 1.8E+02 0.0039 30.9 16.2 196 25-238 57-274 (727)
45 TIGR01556 rhamnosyltran L-rham 66.3 46 0.001 29.9 9.2 126 119-247 65-200 (281)
46 PRK14716 bacteriophage N4 adso 66.1 1.5E+02 0.0033 29.9 15.4 191 29-237 64-276 (504)
47 cd06420 GT2_Chondriotin_Pol_N 65.7 73 0.0016 26.0 16.2 96 120-236 71-166 (182)
48 cd06427 CESA_like_2 CESA_like_ 64.6 97 0.0021 27.0 13.3 120 119-241 75-205 (241)
49 TIGR03030 CelA cellulose synth 63.8 2E+02 0.0043 30.3 15.7 130 111-245 212-355 (713)
50 cd02514 GT13_GLCNAC-TI GT13_GL 62.7 35 0.00076 32.5 7.8 92 119-225 88-185 (334)
51 cd04184 GT2_RfbC_Mx_like Myxoc 62.5 90 0.0019 25.9 17.4 110 119-238 74-189 (202)
52 cd02526 GT2_RfbF_like RfbF is 55.6 1.3E+02 0.0029 25.7 15.8 145 97-245 46-201 (237)
53 COG4092 Predicted glycosyltran 54.4 62 0.0013 30.1 7.5 79 67-150 36-116 (346)
54 cd04188 DPG_synthase DPG_synth 51.0 1.5E+02 0.0033 25.0 10.4 89 68-164 29-119 (211)
55 PHA01631 hypothetical protein 49.6 55 0.0012 28.1 5.9 92 97-214 39-133 (176)
56 PLN02726 dolichyl-phosphate be 48.8 1.8E+02 0.004 25.3 17.1 158 69-241 40-211 (243)
57 cd06434 GT2_HAS Hyaluronan syn 47.2 1.8E+02 0.0039 24.8 13.3 75 70-154 29-103 (235)
58 PF03452 Anp1: Anp1; InterPro 45.4 2.3E+02 0.0049 26.3 9.8 87 67-154 54-168 (269)
59 PRK11498 bcsA cellulose syntha 42.1 4.8E+02 0.01 28.3 14.3 120 111-237 323-456 (852)
60 cd06438 EpsO_like EpsO protein 42.1 2E+02 0.0043 23.8 12.3 88 119-210 71-169 (183)
61 cd06913 beta3GnTL1_like Beta 1 40.8 2.3E+02 0.0049 24.1 11.7 43 121-163 77-119 (219)
62 PRK10018 putative glycosyl tra 38.7 3.1E+02 0.0068 25.1 11.8 105 30-153 4-110 (279)
63 PLN03181 glycosyltransferase; 37.8 2.3E+02 0.005 28.0 8.9 91 48-141 109-211 (453)
64 PRK10714 undecaprenyl phosphat 37.7 3.4E+02 0.0075 25.3 12.5 136 68-214 37-175 (325)
65 cd02522 GT_2_like_a GT_2_like_ 35.7 2.6E+02 0.0057 23.4 15.2 103 123-237 67-174 (221)
66 PF13704 Glyco_tranf_2_4: Glyc 32.7 2E+02 0.0044 21.1 7.1 47 98-145 41-88 (97)
67 cd06442 DPM1_like DPM1_like re 31.6 3.1E+02 0.0068 23.0 11.5 88 125-212 75-167 (224)
68 PF09258 Glyco_transf_64: Glyc 31.1 63 0.0014 29.3 3.9 101 127-233 74-180 (247)
69 PLN03182 xyloglucan 6-xylosylt 30.8 4.2E+02 0.0091 26.2 9.5 93 48-141 106-210 (429)
70 KOG2547 Ceramide glucosyltrans 27.9 89 0.0019 30.4 4.3 80 69-154 114-196 (431)
71 PF04666 Glyco_transf_54: N-Ac 26.5 3.8E+02 0.0082 25.1 8.3 22 128-149 169-190 (297)
72 cd00761 Glyco_tranf_GTA_type G 25.8 2.9E+02 0.0062 20.7 13.6 32 120-151 69-100 (156)
73 PF05412 Peptidase_C33: Equine 22.5 58 0.0013 25.7 1.7 27 114-140 48-80 (108)
74 PF03071 GNT-I: GNT-I family; 22.0 7.9E+02 0.017 24.4 10.3 86 116-214 175-272 (434)
75 PF13712 Glyco_tranf_2_5: Glyc 21.8 1.2E+02 0.0026 26.8 3.8 33 118-150 44-76 (217)
76 PF05637 Glyco_transf_34: gala 20.7 1.3E+02 0.0029 27.0 4.0 33 113-145 61-93 (239)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=7e-75 Score=547.11 Aligned_cols=298 Identities=73% Similarity=1.269 Sum_probs=266.0
Q ss_pred CccccccccCC--CCCCCCCCC-CCCCCCCCCCeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEee
Q 022275 1 MELAASRSGRE--MPGLESSAA-NASTNSRRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIG 77 (300)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~~~~-~~~~~c~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG 77 (300)
||||+.|+-.+ ..|+..+.. .......+.+++|||+|+|+++|++||++||+|||+++..+.++....+++++|++|
T Consensus 106 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG 185 (408)
T PLN03193 106 MELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIG 185 (408)
T ss_pred HHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEee
Confidence 78899888444 333322110 012345567799999999999999999999999999875544455568899999999
Q ss_pred cCCCCChHHHHhHHHHHhhCCcEEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCC
Q 022275 78 HSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKP 157 (300)
Q Consensus 78 ~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~ 157 (300)
.+..+++.++++|++|+++|||||++||.|+|.|||+||+++|+|+.++++++||||+|||+|||+++|+.+|.....++
T Consensus 186 ~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~ 265 (408)
T PLN03193 186 HSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETLVRHRKKP 265 (408)
T ss_pred cCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHHHhcCCCC
Confidence 98755667899999999999999999999999999999999999999999999999999999999999999998776666
Q ss_pred ceeEEeeeccccccCCCCccccCcccccCCCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCC
Q 022275 158 RVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEV 237 (300)
Q Consensus 158 ~ly~G~~~~~pv~r~~~~k~~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v 237 (300)
++|+|++..+|++.+++.||++|++|+|+++++.|||||+|+|||||+|+|+.|+.++..++.|++|||+||+||.+|+|
T Consensus 266 rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~EDV~vG~Wl~~L~V 345 (408)
T PLN03193 266 RVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANEDVSLGSWFIGLDV 345 (408)
T ss_pred CEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcchhhhhhHhccCCc
Confidence 89999998889876778889999989888889999999999999999999999999989999999999999999999999
Q ss_pred eEeCCCCccccCCCCcccccccCCcccccccccccccchhHHHHHHhcccCCcchhhhhcc
Q 022275 238 EHIDDRNMCCQTPPDCEWKAQAGNVCVASFDWSCSGICKSVEKIRSVHEKCGEEDSAIWGV 298 (300)
Q Consensus 238 ~~~~~~~f~~~~~~~~~~~~~~~~~c~~~~~~~~~g~~~~~~~l~~~H~~~~~~~~~~W~~ 298 (300)
+++|+++||+.++++|+|+..++++|+.+|||+|+|+|.+..+|..+|+.|++...++|..
T Consensus 346 ~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~~~~~~~~~ 406 (408)
T PLN03193 346 EHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGENALWSA 406 (408)
T ss_pred eeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCCCcccceee
Confidence 9999999999999999999889999999999999999999999999999999999999975
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-57 Score=431.13 Aligned_cols=248 Identities=23% Similarity=0.299 Sum_probs=218.1
Q ss_pred CCCCCCCC-CeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcE
Q 022275 22 ASTNSRRP-KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF 100 (300)
Q Consensus 22 ~~~~c~~~-~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DI 100 (300)
.|..|+.. .+++|++|+|+++|++||++||+|||++.. ..+..++++|++|.+...+ .+++.|.+|++.||||
T Consensus 85 ~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDI 158 (349)
T KOG2287|consen 85 LPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDI 158 (349)
T ss_pred CChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCE
Confidence 44455544 499999999999999999999999999874 3577899999999997543 5689999999999999
Q ss_pred EEEecccccCCchHHHHHHHHHHHh-cCCccEEEEeCCceeecHHHHHHHHhhc-CCCCceeEEeee-ccccccCCCCcc
Q 022275 101 LRLEHIEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRH-RSKPRVYIGCMK-SGPVLSQKNVKY 177 (300)
Q Consensus 101 l~~df~D~y~nLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~-~~~~~ly~G~~~-~~pv~r~~~~k~ 177 (300)
||+||.|+|.|||+||+++++|+.. |++++|++|+|||+|||+++|+.+|... .+.+.+|.|.+. ..++.|++.+||
T Consensus 159 i~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~Kw 238 (349)
T KOG2287|consen 159 IQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKW 238 (349)
T ss_pred EEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCC
Confidence 9999999999999999999999988 9999999999999999999999999998 788899999975 457779999999
Q ss_pred ccCcccccCCCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhC-CCeEeCCCCccccCCCCcccc
Q 022275 178 HEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGL-EVEHIDDRNMCCQTPPDCEWK 256 (300)
Q Consensus 178 ~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l-~v~~~~~~~f~~~~~~~~~~~ 256 (300)
|+|+.. ||.+.|||||+|+|||+|+++|+.|++++.+++.+++|||++|+|++.. ||++.++..|.....
T Consensus 239 yVp~~~---y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~------ 309 (349)
T KOG2287|consen 239 YVPESE---YPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPL------ 309 (349)
T ss_pred ccCHHH---CCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcccccccc------
Confidence 999864 7899999999999999999999999999999999999999999999877 999998877543110
Q ss_pred cccCCcccccccccccccchhHHHHHHhcccCCcchhhhhccc
Q 022275 257 AQAGNVCVASFDWSCSGICKSVEKIRSVHEKCGEEDSAIWGVR 299 (300)
Q Consensus 257 ~~~~~~c~~~~~~~~~g~~~~~~~l~~~H~~~~~~~~~~W~~~ 299 (300)
..+.| . +++++++|...|.+|..+|+.+
T Consensus 310 --~~~~~------------~-~~~~~~~H~~~p~e~~~~w~~~ 337 (349)
T KOG2287|consen 310 --SFDPC------------C-YRDLLAVHRLSPNEMIYLWKKL 337 (349)
T ss_pred --cCCCC------------c-ccceEEEecCCHHHHHHHHHHh
Confidence 11223 2 7899999999999999999753
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=5e-57 Score=448.02 Aligned_cols=242 Identities=22% Similarity=0.329 Sum_probs=205.8
Q ss_pred CCCCCCCCCCeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcE
Q 022275 21 NASTNSRRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF 100 (300)
Q Consensus 21 ~~~~~c~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DI 100 (300)
.+|.-.++.+++|||+|+|+|+|++||+|||+|||+... ..+..++++|++|.+. ++.++++|++|+++||||
T Consensus 375 kAppL~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDI 447 (636)
T PLN03133 375 KSPPLSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDI 447 (636)
T ss_pred cCCCCCCCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCe
Confidence 444433356799999999999999999999999999642 2345689999999875 567889999999999999
Q ss_pred EEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeee-ccccccCCCCcccc
Q 022275 101 LRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK-SGPVLSQKNVKYHE 179 (300)
Q Consensus 101 l~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~-~~pv~r~~~~k~~~ 179 (300)
||+||.|+|+|||+||++++.|+..|++++|+||+|||+|||+++|+++|+.....+.+|+|++. ..+++|++.+|||+
T Consensus 448 Iq~dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYV 527 (636)
T PLN03133 448 QLMPFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYI 527 (636)
T ss_pred EEEeeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCC
Confidence 99999999999999999999999889999999999999999999999999876666789999986 44566899999999
Q ss_pred CcccccCCCCCCCCCccccceeeecHHHHHHHHHhC--CccCCCChhhHHHHHHHh-----hCCCeEeCCCCccccCCCC
Q 022275 180 PEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQ--PILHKFANEDVSLGSWFI-----GLEVEHIDDRNMCCQTPPD 252 (300)
Q Consensus 180 ~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~--~~~~~~~~EDV~vG~~l~-----~l~v~~~~~~~f~~~~~~~ 252 (300)
|.+. ||.+.|||||+|+|||||+++|+.|+.++ ..++.|++||||+|+|++ ++.+.+.++.+|+.
T Consensus 528 s~~e---yp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~----- 599 (636)
T PLN03133 528 SPEE---WPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYN----- 599 (636)
T ss_pred CHHH---CCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccC-----
Confidence 9754 78999999999999999999999999864 578999999999999985 44556666666642
Q ss_pred cccccccCCcccccccccccccchhHHHHHHhcccCCcchhhhhccc
Q 022275 253 CEWKAQAGNVCVASFDWSCSGICKSVEKIRSVHEKCGEEDSAIWGVR 299 (300)
Q Consensus 253 ~~~~~~~~~~c~~~~~~~~~g~~~~~~~l~~~H~~~~~~~~~~W~~~ 299 (300)
+.|. ..++.+|..+|++|..+|+.+
T Consensus 600 --------~~C~--------------~~~i~~H~~sP~eM~~lW~~l 624 (636)
T PLN03133 600 --------EGCK--------------DGYVVAHYQSPREMLCLWQKL 624 (636)
T ss_pred --------CcCC--------------CCeEEEecCCHHHHHHHHHHH
Confidence 2242 234668999999999999864
No 4
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-56 Score=396.01 Aligned_cols=264 Identities=66% Similarity=1.101 Sum_probs=246.8
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEe-cc
Q 022275 28 RPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLE-HI 106 (300)
Q Consensus 28 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~d-f~ 106 (300)
+.+++++|+|.|+++..+||+++|+||...+..+++++...+|.++|++|... .++..+.+|++|.++|+|+|.+| ..
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~-~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTAT-LGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCC-ccHHHHHHHHHHHHhcCCeEeechhH
Confidence 77999999999999999999999999999988888898899999999999943 46778999999999999999999 99
Q ss_pred cccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCCccccCcccccC
Q 022275 107 EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFG 186 (300)
Q Consensus 107 D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~~~~~~~~~~ 186 (300)
|+|.+|+.||+.+|.++..+++++|++|+|||+|||++.|...|.+.+.++++|+||++++||..+++.|||+|+ |+|+
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999988889999999999999999999999999 9987
Q ss_pred CCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCCeEeCCCCccccCCCCcccccccCCccccc
Q 022275 187 EEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVEHIDDRNMCCQTPPDCEWKAQAGNVCVAS 266 (300)
Q Consensus 187 y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v~~~~~~~f~~~~~~~~~~~~~~~~~c~~~ 266 (300)
..++ |.+|+.|++|+||++++..|..++..++.+.+|||.+|.|+.+|+|+++|++++|+..+ +.+..+.|.+.
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeee
Confidence 6555 99999999999999999999999988999999999999999999999999999998643 44567899999
Q ss_pred ccccccccchhHHHHHHhcccCCcchhhhhccc
Q 022275 267 FDWSCSGICKSVEKIRSVHEKCGEEDSAIWGVR 299 (300)
Q Consensus 267 ~~~~~~g~~~~~~~l~~~H~~~~~~~~~~W~~~ 299 (300)
++++|+|+|.+..+|..+|..|.+.....|...
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~ 272 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSR 272 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCcc
Confidence 999999999999999999999998888888753
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=6.2e-51 Score=356.78 Aligned_cols=191 Identities=27% Similarity=0.350 Sum_probs=170.9
Q ss_pred HHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEecccccCCchHHHHHHHHHHH
Q 022275 45 KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAV 124 (300)
Q Consensus 45 ~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~y~nLt~Ktl~~l~w~~ 124 (300)
+||++||+||++... ..+.+++++|++|.+...+..++++|++|+++|+||||+||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999863 245889999999999755677888999999999999999999999999999999999998
Q ss_pred h-cCCccEEEEeCCceeecHHHHHHHHhhc--CCCCceeEEe-eeccccccCCCCccccCcccccCCCCCCCCCccccce
Q 022275 125 A-KWDADFYVKVDDDVHVNLGMLATTLSRH--RSKPRVYIGC-MKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQI 200 (300)
Q Consensus 125 ~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~ly~G~-~~~~pv~r~~~~k~~~~~~~~~~y~~~~yP~Y~~G~g 200 (300)
+ |++++||+|+|||+|||+++|.++|... ......+.|. ....++.|++.+|||+|+.. |+.+.|||||+|+|
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~---y~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEE---YPDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeee---cccccCCCcCCCCe
Confidence 8 7789999999999999999999999987 3334444455 55667788999999999864 78899999999999
Q ss_pred eeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCCeEeCCC
Q 022275 201 YAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVEHIDDR 243 (300)
Q Consensus 201 YvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v~~~~~~ 243 (300)
|+||+++|+.|+.++..++.+++|||++|+|+.+++|+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999998863
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=7.1e-36 Score=278.69 Aligned_cols=196 Identities=20% Similarity=0.293 Sum_probs=161.5
Q ss_pred CCCCCCCeEEEEEEeCCCCC--HHHHHHHHHhhccCcchhhh-hhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcE
Q 022275 24 TNSRRPKVFVVIGINTAFSS--RKRRDSVRDTWMPQGEKLIQ-LEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF 100 (300)
Q Consensus 24 ~~c~~~~~~lli~V~S~~~~--~~rR~aIR~TW~~~~~~~~~-l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DI 100 (300)
+.++.++-+++++|+|..++ +.||+++|+||.+-.....+ .+-...+.++|+||.+++.+-+.+++|++|+++||||
T Consensus 73 ~~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DI 152 (382)
T PTZ00210 73 AVWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDI 152 (382)
T ss_pred HHhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCE
Confidence 46788999999999999988 89999999999987643221 2123457789999999876678999999999999999
Q ss_pred EEEec------------------ccccCCchHHHHHHHHHHHh-cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeE
Q 022275 101 LRLEH------------------IEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYI 161 (300)
Q Consensus 101 l~~df------------------~D~y~nLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~ 161 (300)
|++|| .|++.|+|+||+++++|+.+ ||+++||+|+|||+|||+++++++|+.. ++..+|+
T Consensus 153 Vilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~ 231 (382)
T PTZ00210 153 ITLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYM 231 (382)
T ss_pred EEEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEE
Confidence 99999 77888999999999999998 8899999999999999999999999765 5567999
Q ss_pred EeeeccccccCCCCccccCcccccCCCCCCCCCccccceeeecHHHHHHHHHhCCc--c---------------CCCChh
Q 022275 162 GCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPI--L---------------HKFANE 224 (300)
Q Consensus 162 G~~~~~pv~r~~~~k~~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~--~---------------~~~~~E 224 (300)
|.+... .+ | + .+.+||||+|+||+||+|+|+.|+...+. + -.+..|
T Consensus 232 G~v~~~-------~~---p--~-----Rd~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~E 294 (382)
T PTZ00210 232 GRYNYY-------NR---I--W-----RRNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYE 294 (382)
T ss_pred EeeCCC-------Cc---c--c-----cCCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCch
Confidence 987421 00 1 0 12469999999999999999999987432 1 135689
Q ss_pred hHHHHHHH-hhCCC
Q 022275 225 DVSLGSWF-IGLEV 237 (300)
Q Consensus 225 DV~vG~~l-~~l~v 237 (300)
|+.+|.+| .+++.
T Consensus 295 DiMvG~vLr~~~k~ 308 (382)
T PTZ00210 295 DVMVGMILREKVVY 308 (382)
T ss_pred HHHHHHHHHHhcCc
Confidence 99999999 55543
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.83 E-value=3.2e-20 Score=168.98 Aligned_cols=191 Identities=18% Similarity=0.237 Sum_probs=98.9
Q ss_pred eEEEEEEeCCCCC-HHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEeccccc
Q 022275 31 VFVVIGINTAFSS-RKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 109 (300)
Q Consensus 31 ~~lli~V~S~~~~-~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~y 109 (300)
-+++|+|+|++++ ..|-.+|++||++.+.. ..|+..... + ..|..+ .-.+++..++...+
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~-----------~~~ifsd~~--d----~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK-----------QTFIFSDAE--D----PSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG-----------GEEEEESS--------HHHHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC-----------ceEEecCcc--c----cccccc--cccccccCCCcchh
Confidence 3689999999975 45668999999998641 234322211 2 223222 23466666666666
Q ss_pred CCchHHHHHHHHHHHh-cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeee-ccccccCCCCccccCcccccCC
Q 022275 110 HELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK-SGPVLSQKNVKYHEPEYWKFGE 187 (300)
Q Consensus 110 ~nLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~-~~pv~r~~~~k~~~~~~~~~~y 187 (300)
...+++.++.+.+... .++.+|++++|||+||++++|+++|...++.+++|+|... ..+...-.........
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~~------ 140 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKSK------ 140 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccccC------
Confidence 5555555555555433 4688999999999999999999999999999999999964 2332110000000011
Q ss_pred CCCCCCCc-cccceeeecHHHHHHHHHh---CCccCC----CChhhHHHHHHHhh-CCCeEeCCCCcccc
Q 022275 188 EGNKYFRH-ATGQIYAISKDLATYISIN---QPILHK----FANEDVSLGSWFIG-LEVEHIDDRNMCCQ 248 (300)
Q Consensus 188 ~~~~yP~Y-~~G~gYvlS~~~~~~l~~~---~~~~~~----~~~EDV~vG~~l~~-l~v~~~~~~~f~~~ 248 (300)
..-..| .+|+||+||+.++++|... ...... -..||+.+|.|+.. +||+..+.+.|+..
T Consensus 141 --~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~ 208 (252)
T PF02434_consen 141 --DSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSH 208 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---S
T ss_pred --cCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhccc
Confidence 111234 4689999999999999542 222222 23799999999987 99999999889753
No 8
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.2e-16 Score=152.07 Aligned_cols=173 Identities=23% Similarity=0.273 Sum_probs=131.4
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHH-HHHHHhhccCcchhhhhhcCCcEEEEEEe---ecCCCCChHHHHhHHHHHhhCCc
Q 022275 24 TNSRRPKVFVVIGINTAFSSRKRR-DSVRDTWMPQGEKLIQLEREKGIIIRFMI---GHSATSNSILDKAIDSEDAQHKD 99 (300)
Q Consensus 24 ~~c~~~~~~lli~V~S~~~~~~rR-~aIR~TW~~~~~~~~~l~~~~~v~~~Fvl---G~~~~~~~~~~~~l~~E~~~~~D 99 (300)
......+..+++.|+|.+.+...| +.+-+||++.+. +..|+- .+.. . .+ .
T Consensus 84 ~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~-----------~~~f~s~~~s~~~---~-----------~f-~ 137 (364)
T KOG2246|consen 84 ALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD-----------KGIFFSPTLSKDD---S-----------RF-P 137 (364)
T ss_pred hhccCCCceEEEEEEecCcCceeehhhhhcccccccC-----------cceecCccCCCCC---C-----------cC-c
Confidence 344567889999999988766555 699999999875 234554 3321 1 11 1
Q ss_pred EEEEecccccCCchHHHHHHHHHHHh--cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCCcc
Q 022275 100 FLRLEHIEGYHELSAKTKIFFSTAVA--KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKY 177 (300)
Q Consensus 100 Il~~df~D~y~nLt~Ktl~~l~w~~~--~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~ 177 (300)
.|..+..|+|+++-.||..+++++.+ -.+++|++|+|||||+.++||..+|...++++++|+|+.. |-
T Consensus 138 ~v~~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~----------~~ 207 (364)
T KOG2246|consen 138 TVYYNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRS----------KS 207 (364)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccc----------cc
Confidence 34678899999999999999999985 3699999999999999999999999999999999999852 11
Q ss_pred ccCcccccCCCCCCCCCccccceeeecHHHHHHHHHhCC----cc-CCC--ChhhHHHHHHHhhCCCeEeCCC
Q 022275 178 HEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQP----IL-HKF--ANEDVSLGSWFIGLEVEHIDDR 243 (300)
Q Consensus 178 ~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~----~~-~~~--~~EDV~vG~~l~~l~v~~~~~~ 243 (300)
+.. ..|- -+|+||++|+++.+.+++... .+ ... ..||+-||.||+.+||...+.+
T Consensus 208 ~~~---------~~y~--~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~ 269 (364)
T KOG2246|consen 208 YFQ---------NGYS--SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDER 269 (364)
T ss_pred ccc---------cccc--cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCch
Confidence 111 1121 379999999999998877422 12 233 3899999999999999877653
No 9
>PLN03153 hypothetical protein; Provisional
Probab=99.27 E-value=8.3e-11 Score=114.78 Aligned_cols=181 Identities=19% Similarity=0.169 Sum_probs=113.2
Q ss_pred CCeEEEEEEeCCCCC-HHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEeccc
Q 022275 29 PKVFVVIGINTAFSS-RKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIE 107 (300)
Q Consensus 29 ~~~~lli~V~S~~~~-~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D 107 (300)
.--.++++|.+..+. .+|+..|+.+|.+... . ..+|+........ ....+ --|.+. .|
T Consensus 120 ~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------r--g~v~ld~~~~~~~--~~~~~--------P~i~is-~d 178 (537)
T PLN03153 120 SLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------R--GHVWLEEQVSPEE--GDDSL--------PPIMVS-ED 178 (537)
T ss_pred ccccEEEEEEEchhhhhhhhhhhhhhcCcccc--------e--eEEEecccCCCCC--CcCCC--------CCEEeC-CC
Confidence 345788888887764 4677999999997531 1 2456544332100 00000 001111 11
Q ss_pred c----cCC---chHH--HHHHHHHHHh--cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCCc
Q 022275 108 G----YHE---LSAK--TKIFFSTAVA--KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVK 176 (300)
Q Consensus 108 ~----y~n---Lt~K--tl~~l~w~~~--~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k 176 (300)
+ |.| .... +..+...+.. .++++|++++|||||+.+++|++.|...+++++.|+|..... .
T Consensus 179 ~s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~-~------- 250 (537)
T PLN03153 179 TSRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSES-H------- 250 (537)
T ss_pred cccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccc-c-------
Confidence 1 222 2221 1112333333 589999999999999999999999999999999999975311 0
Q ss_pred cccCcccccCCCCCCCCCc-cccceeeecHHHHHHHHHhCCcc----CCCChhhHHHHHHHhhCCCeEeCCCCccc
Q 022275 177 YHEPEYWKFGEEGNKYFRH-ATGQIYAISKDLATYISINQPIL----HKFANEDVSLGSWFIGLEVEHIDDRNMCC 247 (300)
Q Consensus 177 ~~~~~~~~~~y~~~~yP~Y-~~G~gYvlS~~~~~~l~~~~~~~----~~~~~EDV~vG~~l~~l~v~~~~~~~f~~ 247 (300)
.....| .| .| -+|+||+||+.+++.|....... +...-+|.-||.|+..+||...+..+|+.
T Consensus 251 ---~qn~~f-----~~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ 317 (537)
T PLN03153 251 ---SANSYF-----SH-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQ 317 (537)
T ss_pred ---cccccc-----cc-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccc
Confidence 000001 01 12 37999999999999988753222 22245888999999999999988888875
No 10
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=4.8e-05 Score=74.25 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=79.9
Q ss_pred ccccCCchHHHH-HHHHHHHhc--CCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCCccccCcc
Q 022275 106 IEGYHELSAKTK-IFFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEY 182 (300)
Q Consensus 106 ~D~y~nLt~Ktl-~~l~w~~~~--~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~~~~~~ 182 (300)
+..|.-...|+. +.++++.++ -+++|++-+-|++|||...|++++..+.-+.++|+|.-. +.
T Consensus 72 vs~~d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~-------------~~-- 136 (681)
T KOG3708|consen 72 VSPYDLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA-------------ED-- 136 (681)
T ss_pred cCccccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh-------------hC--
Confidence 333443445554 456777763 589999999999999999999999998888899999421 00
Q ss_pred cccCCCCCCCCCcc-ccceeeecHHHHHHHHHhCCccCCC---ChhhHHHHHHHh---hCCCeEeC
Q 022275 183 WKFGEEGNKYFRHA-TGQIYAISKDLATYISINQPILHKF---ANEDVSLGSWFI---GLEVEHID 241 (300)
Q Consensus 183 ~~~~y~~~~yP~Y~-~G~gYvlS~~~~~~l~~~~~~~~~~---~~EDV~vG~~l~---~l~v~~~~ 241 (300)
-+ .. | .|.||+||+.++.+|-.+-.-+.-+ .=.|+.+|.|+. +++.++.|
T Consensus 137 ----gs-~r----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~h 193 (681)
T KOG3708|consen 137 ----GS-GR----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLH 193 (681)
T ss_pred ----cc-Cc----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchh
Confidence 00 12 6 4899999999999998864433322 247899999993 55555544
No 11
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.15 E-value=0.13 Score=44.47 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=50.5
Q ss_pred EEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEE-----eccccc
Q 022275 35 IGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRL-----EHIEGY 109 (300)
Q Consensus 35 i~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~-----df~D~y 109 (300)
|.|.|-+...+||+.|.+..... ++.+-|+-|.....-+ ...+ ...+..-... ...-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~l~--~~~~---~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRDLS--EDEL---FRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccccc--hHHH---HHHhhhhhhhccccccCCcce
Confidence 45668888899999998876643 2345566555432111 1011 1111111100 011111
Q ss_pred CCchHHHHHHHHHHHhcCCccEEEEeCCceeecHH
Q 022275 110 HELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 144 (300)
Q Consensus 110 ~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~ 144 (300)
-.=.+-.+..++-+.+ .+.++++-..||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 1114455566666654 367999999999999965
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=96.12 E-value=0.21 Score=43.45 Aligned_cols=185 Identities=12% Similarity=0.027 Sum_probs=84.4
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcE--EEEecccc
Q 022275 31 VFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF--LRLEHIEG 108 (300)
Q Consensus 31 ~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DI--l~~df~D~ 108 (300)
|.+.|+|++.-....-++.|+.--.+. ...+.++++...+. +...+.+++-.+.+... -.+.-.
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~---------~~~~~v~vvd~~~~---~~~~~~~~~~~~~~~~~~v~vi~~~-- 66 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQD---------YPRLEVVVVDDGSD---DETAEILRALAARYPRVRVRVIRRP-- 66 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSH---------HHTEEEEEEEE-SS---S-GCTTHHHHHHTTGG-GEEEEE----
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCC---------CCCeEEEEEECCCC---hHHHHHHHHHHHHcCCCceEEeecC--
Confidence 346777777544444455555544321 12356666664432 22234455555566553 222221
Q ss_pred cCCc--hHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhc-CCCCceeEEeeeccc---ccc--C--CCCccc
Q 022275 109 YHEL--SAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH-RSKPRVYIGCMKSGP---VLS--Q--KNVKYH 178 (300)
Q Consensus 109 y~nL--t~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~-~~~~~ly~G~~~~~p---v~r--~--~~~k~~ 178 (300)
.|. +.|.- ++.++.+..+.+|++.+|||+.+..+-|..++... .+.-....|.....+ ... . ....|+
T Consensus 67 -~~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (228)
T PF13641_consen 67 -RNPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWH 144 (228)
T ss_dssp ---HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EET
T ss_pred -CCCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhh
Confidence 222 23443 34666555679999999999999998888877766 343344444432111 000 0 000111
Q ss_pred cCcccccCCCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCC
Q 022275 179 EPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEV 237 (300)
Q Consensus 179 ~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v 237 (300)
... ......... .++.|++.++.+++++.+-.-.. ....||..++..+...|.
T Consensus 145 ~~~-~~~~~~~~~--~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~ 197 (228)
T PF13641_consen 145 LRF-RSGRRALGV--AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGW 197 (228)
T ss_dssp TTS--TT-B------S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT-
T ss_pred hhh-hhhhcccce--eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCC
Confidence 110 000011111 34679999999999998853222 334599999988865543
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=95.85 E-value=0.35 Score=46.31 Aligned_cols=190 Identities=14% Similarity=0.076 Sum_probs=97.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCc--EEEEeccc
Q 022275 30 KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKD--FLRLEHIE 107 (300)
Q Consensus 30 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~D--Il~~df~D 107 (300)
.+.+-|+|++.-....-.+.|+ +..++. -..+.++++...+. |. ..+.+++=.+.|.+ |..+.-.+
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~-Sl~~q~--------Yp~~EIivvdd~s~--D~-t~~iv~~~~~~~p~~~i~~v~~~~ 107 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLA-SFCRQD--------YPGFQMLFGVQDPD--DP-ALAVVRRLRADFPDADIDLVIDAR 107 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHH-HHHhcC--------CCCeEEEEEeCCCC--Cc-HHHHHHHHHHhCCCCceEEEECCC
Confidence 4567777776544444445554 333332 12367777665543 22 22333333455665 32221111
Q ss_pred ccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcC-CCCceeEEeeeccccccCCC--------Cccc
Q 022275 108 GYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR-SKPRVYIGCMKSGPVLSQKN--------VKYH 178 (300)
Q Consensus 108 ~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~ly~G~~~~~pv~r~~~--------~k~~ 178 (300)
. .....|.-...+ +.+..+.++++.+|+|+.+..+.|.+.+.... ++-.+..|.....+. .... .-++
T Consensus 108 ~-~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~-~~~~~~l~~~~~~~~~ 184 (373)
T TIGR03472 108 R-HGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPV-PGFWSRLGAMGINHNF 184 (373)
T ss_pred C-CCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCC-CCHHHHHHHHHhhhhh
Confidence 1 122346654433 44556899999999999999998888876653 222222222111111 0000 0011
Q ss_pred cCcccccCCCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCC
Q 022275 179 EPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEV 237 (300)
Q Consensus 179 ~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v 237 (300)
.|... ..... .-+.+|.|++.++.+++.+.+---.. ....-.||+.+|.-+...|.
T Consensus 185 ~~~~~-~~~~~-~~~~~~~G~~~a~RR~~l~~iGGf~~-~~~~~~ED~~l~~~i~~~G~ 240 (373)
T TIGR03472 185 LPSVM-VARAL-GRARFCFGATMALRRATLEAIGGLAA-LAHHLADDYWLGELVRALGL 240 (373)
T ss_pred hHHHH-HHHhc-cCCccccChhhheeHHHHHHcCChHH-hcccchHHHHHHHHHHHcCC
Confidence 11100 00000 11345889999999999888753211 11223599999988865543
No 14
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=94.72 E-value=2 Score=41.31 Aligned_cols=191 Identities=13% Similarity=0.024 Sum_probs=92.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCC---cEEEEecc
Q 022275 30 KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHK---DFLRLEHI 106 (300)
Q Consensus 30 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~---DIl~~df~ 106 (300)
.+.+-|+|++.-....-.+.|..--.+.- ...+.++++-..+. |++ .+.+++-.+++. .+......
T Consensus 39 ~p~VSVIIpa~Ne~~~L~~~L~sL~~q~y--------p~~~eIIVVDd~St--D~T-~~i~~~~~~~~~~~~~i~vi~~~ 107 (384)
T TIGR03469 39 WPAVVAVVPARNEADVIGECVTSLLEQDY--------PGKLHVILVDDHST--DGT-ADIARAAARAYGRGDRLTVVSGQ 107 (384)
T ss_pred CCCEEEEEecCCcHhHHHHHHHHHHhCCC--------CCceEEEEEeCCCC--CcH-HHHHHHHHHhcCCCCcEEEecCC
Confidence 34577777765433223344433222211 12357777766554 221 222222223343 34444432
Q ss_pred cccCCchHHHH---HHHHHHHh-cCCccEEEEeCCceeecHHHHHHHHhhcCCC-CceeEEeeeccccccCCCCccccC-
Q 022275 107 EGYHELSAKTK---IFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSK-PRVYIGCMKSGPVLSQKNVKYHEP- 180 (300)
Q Consensus 107 D~y~nLt~Ktl---~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~-~~ly~G~~~~~pv~r~~~~k~~~~- 180 (300)
+.-.+-.-|.. .+++.+.+ .++.+|++.+|+|+.+..+.|.+.+...... ..+..|...... .....+...|
T Consensus 108 ~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~~~~~~ 185 (384)
T TIGR03469 108 PLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC--ESFWEKLLIPA 185 (384)
T ss_pred CCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC--CCHHHHHHHHH
Confidence 22122234533 34455443 3458999999999999998888887655322 233322221000 0000000000
Q ss_pred ----------cccccCCCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCC
Q 022275 181 ----------EYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE 236 (300)
Q Consensus 181 ----------~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~ 236 (300)
..+ ...+ .....++.|++.++++++.+++---.. ......||+.++.-+...|
T Consensus 186 ~~~~~~~~~~~~~-~~~~-~~~~~~~~G~~~lirr~~~~~vGGf~~-~~~~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 186 FVFFFQKLYPFRW-VNDP-RRRTAAAAGGCILIRREALERIGGIAA-IRGALIDDCTLAAAVKRSG 248 (384)
T ss_pred HHHHHHHhcchhh-hcCC-CccceeecceEEEEEHHHHHHcCCHHH-HhhCcccHHHHHHHHHHcC
Confidence 000 0001 112344679999999999988732111 1122479999998886543
No 15
>PRK11204 N-glycosyltransferase; Provisional
Probab=94.62 E-value=2.8 Score=40.43 Aligned_cols=192 Identities=16% Similarity=0.141 Sum_probs=97.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEeccc
Q 022275 28 RPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIE 107 (300)
Q Consensus 28 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D 107 (300)
.+.+.+-|+|++.-.. +.|+++-.+-.. . .....+++.+-..+. +...+.+++..+++..+...+..+
T Consensus 51 ~~~p~vsViIp~yne~----~~i~~~l~sl~~----q-~yp~~eiiVvdD~s~---d~t~~~l~~~~~~~~~v~~i~~~~ 118 (420)
T PRK11204 51 KEYPGVSILVPCYNEG----ENVEETISHLLA----L-RYPNYEVIAINDGSS---DNTGEILDRLAAQIPRLRVIHLAE 118 (420)
T ss_pred CCCCCEEEEEecCCCH----HHHHHHHHHHHh----C-CCCCeEEEEEECCCC---ccHHHHHHHHHHhCCcEEEEEcCC
Confidence 3456778888775433 334444433210 0 012345544433222 223445555556666665555333
Q ss_pred ccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCCccccC----ccc
Q 022275 108 GYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEP----EYW 183 (300)
Q Consensus 108 ~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~~~~----~~~ 183 (300)
|.. |.- +++.+.+..+.+|++..|+|+.+..+.|.+.++.....+++ |.+.+.+..++.. .+... +..
T Consensus 119 ---n~G-ka~-aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~g~~~~~~~~-~~~~~~~~~~~~ 190 (420)
T PRK11204 119 ---NQG-KAN-ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVTGNPRIRNRS-TLLGRIQVGEFS 190 (420)
T ss_pred ---CCC-HHH-HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEECCceeccch-hHHHHHHHHHHH
Confidence 332 433 45666566789999999999999999888887765322221 2322222111111 11000 000
Q ss_pred c-cC--C---CCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhC--CCeEeCC
Q 022275 184 K-FG--E---EGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGL--EVEHIDD 242 (300)
Q Consensus 184 ~-~~--y---~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l--~v~~~~~ 242 (300)
. +. . .....+..++|++.+++++++..+---. +..-.||+-++.-+... .+...++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~~G~~i~~~p~ 254 (420)
T PRK11204 191 SIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQLRGWDIRYEPR 254 (420)
T ss_pred HhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHHcCCeEEeccc
Confidence 0 00 0 0001122357888999999888763211 12346999999887544 4444444
No 16
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.46 E-value=1.6 Score=37.55 Aligned_cols=155 Identities=15% Similarity=0.009 Sum_probs=78.1
Q ss_pred EEEEEEeecCCCCChHHHHhHHHHHhhC--CcEEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHH
Q 022275 70 IIIRFMIGHSATSNSILDKAIDSEDAQH--KDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 147 (300)
Q Consensus 70 v~~~FvlG~~~~~~~~~~~~l~~E~~~~--~DIl~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 147 (300)
+.++.+-..+. +. ..+.++ +...+ ..+..+.... -.|.. |. .++.+..+..+.+|++.+|+|..+..+-|.
T Consensus 29 ~eiivvdd~s~--d~-t~~~~~-~~~~~~~~~v~~~~~~~-~~~~g-~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHST--DG-TVQILE-FAAAKPNFQLKILNNSR-VSISG-KK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCC--cC-hHHHHH-HHHhCCCcceEEeeccC-cccch-hH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 56666655443 22 233343 23233 3455555443 22322 32 234566566789999999999999988888
Q ss_pred HHHhhcC-CCCceeEEeeeccccc---cC-CCCccccCcccccCCCCCCCCCccccceeeecHHHHHHHHHhCCccCCCC
Q 022275 148 TTLSRHR-SKPRVYIGCMKSGPVL---SQ-KNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFA 222 (300)
Q Consensus 148 ~~L~~~~-~~~~ly~G~~~~~pv~---r~-~~~k~~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~ 222 (300)
+.+.... +....+.|.....+.. .. ....+..............++..+.|++.++++++.+++---... ....
T Consensus 102 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~-~~~~ 180 (229)
T cd04192 102 TFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGN-DHIA 180 (229)
T ss_pred HHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCccc-cccc
Confidence 8776443 2333455543211100 00 000000000000000112355567799999999999887433222 2234
Q ss_pred hhhHHHHHHH
Q 022275 223 NEDVSLGSWF 232 (300)
Q Consensus 223 ~EDV~vG~~l 232 (300)
.||..++.-+
T Consensus 181 ~eD~~~~~~~ 190 (229)
T cd04192 181 SGDDELLLAK 190 (229)
T ss_pred cCCHHHHHHH
Confidence 6777776544
No 17
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=93.34 E-value=4.6 Score=34.41 Aligned_cols=132 Identities=18% Similarity=0.158 Sum_probs=75.6
Q ss_pred EEEEEEeecCCCCChHHHHhHHHHHhhCC--cEEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHH
Q 022275 70 IIIRFMIGHSATSNSILDKAIDSEDAQHK--DFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 147 (300)
Q Consensus 70 v~~~FvlG~~~~~~~~~~~~l~~E~~~~~--DIl~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 147 (300)
+.+++|...+. +. ..+.+++-.+.|. ++.......+. ....|.- .+..+.+..+.+|++..|+|+.+..+.|.
T Consensus 31 ~eiivVdd~s~--d~-t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 31 YEILFCVQDED--DP-AIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred eEEEEEeCCCc--ch-HHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 67777776654 22 2344444445554 33222211111 1123433 23444555678999999999999888887
Q ss_pred HHHhhcCCCCceeEEeeeccccccCCCCccccCcccccCCCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHH
Q 022275 148 TTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVS 227 (300)
Q Consensus 148 ~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~ 227 (300)
..+..... +. +|.+. +.++.|++.++.+++.+.+---.. ...+..||..
T Consensus 106 ~l~~~~~~-~~--~~~v~---------------------------~~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~~ 154 (196)
T cd02520 106 RMVAPLMD-PG--VGLVT---------------------------CLCAFGKSMALRREVLDAIGGFEA-FADYLAEDYF 154 (196)
T ss_pred HHHHHhhC-CC--CCeEE---------------------------eecccCceeeeEHHHHHhccChHH-HhHHHHHHHH
Confidence 77765321 11 12111 004678999999999987743211 1222369999
Q ss_pred HHHHHhhCCC
Q 022275 228 LGSWFIGLEV 237 (300)
Q Consensus 228 vG~~l~~l~v 237 (300)
++.-+...|.
T Consensus 155 l~~rl~~~G~ 164 (196)
T cd02520 155 LGKLIWRLGY 164 (196)
T ss_pred HHHHHHHcCC
Confidence 9988865553
No 18
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=93.23 E-value=8.2 Score=37.86 Aligned_cols=189 Identities=13% Similarity=0.151 Sum_probs=98.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEecccc
Q 022275 29 PKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEG 108 (300)
Q Consensus 29 ~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~ 108 (300)
..+.+-|+|++......-++.|+.- .++. ...++++++-..+. ++ ..+.+++..+++..+.......
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sl-l~q~--------yp~~eIivVdDgs~--D~-t~~~~~~~~~~~~~v~vv~~~~- 139 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAA-LAQT--------YTNIEVIAINDGSS--DD-TAQVLDALLAEDPRLRVIHLAH- 139 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHH-HcCC--------CCCeEEEEEECCCC--cc-HHHHHHHHHHhCCCEEEEEeCC-
Confidence 3467778888765443333444321 1111 12456655544332 22 3444555556666654444322
Q ss_pred cCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCC---ccccCcccc-
Q 022275 109 YHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNV---KYHEPEYWK- 184 (300)
Q Consensus 109 y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~---k~~~~~~~~- 184 (300)
|.. |. .+++......+.+|++..|+|+.+..+.|.+.+......++ +|.+.+.|..++..+ +....+...
T Consensus 140 --n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~ 213 (444)
T PRK14583 140 --NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSI 213 (444)
T ss_pred --CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHH
Confidence 322 43 34566666678999999999999999988888765422222 133322222221111 111000000
Q ss_pred --------cCCCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCC--CeEeCC
Q 022275 185 --------FGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE--VEHIDD 242 (300)
Q Consensus 185 --------~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~--v~~~~~ 242 (300)
-.| +. +..++|++.++.+++++.+---. +..-.||.-+|.-+...| +...++
T Consensus 214 ~~~~~~~~~~~-g~--~~~~sG~~~~~rr~al~~vGg~~---~~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 214 IGLIKRTQRVY-GQ--VFTVSGVVAAFRRRALADVGYWS---PDMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred HHHHHHHHHHh-CC--ceEecCceeEEEHHHHHHcCCCC---CCcccccHHHHHHHHHcCCeEEEeec
Confidence 001 11 12357888999999887763211 122369999998885544 444443
No 19
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.16 E-value=3.6 Score=33.04 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=51.6
Q ss_pred cCCccEEEEeCCceeecHHHHHHHHhhcCCCCce-eEEeeeccccccCCCCccccCcccccCCCCCCCCCccccceeeec
Q 022275 126 KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV-YIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAIS 204 (300)
Q Consensus 126 ~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~l-y~G~~~~~pv~r~~~~k~~~~~~~~~~y~~~~yP~Y~~G~gYvlS 204 (300)
..+.+|++..|||..+..+.+...+......+.. .++. . +.|++.+++
T Consensus 72 ~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------~----~~~~~~~~~ 120 (166)
T cd04186 72 EAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGP---------------------------K----VSGAFLLVR 120 (166)
T ss_pred hCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEc---------------------------c----CceeeEeee
Confidence 3489999999999999988888777643222211 1110 0 568899999
Q ss_pred HHHHHHHHHhCCccCCCChhhHHHHHHHhhCC
Q 022275 205 KDLATYISINQPILHKFANEDVSLGSWFIGLE 236 (300)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~ 236 (300)
+++++.+-.-...... ..||..+...+...|
T Consensus 121 ~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g 151 (166)
T cd04186 121 REVFEEVGGFDEDFFL-YYEDVDLCLRARLAG 151 (166)
T ss_pred HHHHHHcCCCChhhhc-cccHHHHHHHHHHcC
Confidence 9988876432222212 569998887665444
No 20
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=92.99 E-value=0.35 Score=41.48 Aligned_cols=121 Identities=16% Similarity=0.076 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcC-CCCceeEEeeeccccccCCCC---ccc---cCcccccC
Q 022275 114 AKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR-SKPRVYIGCMKSGPVLSQKNV---KYH---EPEYWKFG 186 (300)
Q Consensus 114 ~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~ly~G~~~~~pv~r~~~~---k~~---~~~~~~~~ 186 (300)
.|+-.....+....+.++++..|+|+.|+.+-|.+.+.... +.-.+..|.....|.. .-.+ .-+ .+.-+.
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~-~~~~~l~~~~~~~~~~~~~-- 93 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPAR-GFWSRLEAAFFNFLPGVLQ-- 93 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCc-CHHHHHHHHHHhHHHHHHH--
Confidence 46655554443337899999999999999999988887654 2323332221111110 0000 001 111000
Q ss_pred CCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCCeEe
Q 022275 187 EEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVEHI 240 (300)
Q Consensus 187 y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v~~~ 240 (300)
.-.-.++|.|+.+++.+++++.+--- ..+...--||..+|..+...|.+..
T Consensus 94 --a~~~~~~~~G~~m~~rr~~L~~~GG~-~~l~~~ladD~~l~~~~~~~G~~v~ 144 (175)
T PF13506_consen 94 --ALGGAPFAWGGSMAFRREALEEIGGF-EALADYLADDYALGRRLRARGYRVV 144 (175)
T ss_pred --HhcCCCceecceeeeEHHHHHHcccH-HHHhhhhhHHHHHHHHHHHCCCeEE
Confidence 01246789999999999999876211 1122344799999999976666543
No 21
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=92.64 E-value=6.3 Score=34.19 Aligned_cols=158 Identities=11% Similarity=0.010 Sum_probs=78.9
Q ss_pred CcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHH
Q 022275 68 KGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 147 (300)
Q Consensus 68 ~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 147 (300)
..+.++.+-+.+. + ...+.++...+++..+....-.. .. +. .++..+.+..+.+|++.+|+|..+....|.
T Consensus 30 ~~~evivvd~~s~--d-~~~~~~~~~~~~~~~v~~i~~~~----~~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGST--D-GTREIVQEYAAKDPRIRLIDNPK----RI-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCC--c-cHHHHHHHHHhcCCeEEEEeCCC----CC-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 3456776655543 2 23444444444443344443221 11 11 245555555589999999999999988777
Q ss_pred HHHhhcCC-CCceeEEeeec---ccccc----CCCCccccCcccccCCCCCCCCCccccceeeecHHHHHHHHHhCCccC
Q 022275 148 TTLSRHRS-KPRVYIGCMKS---GPVLS----QKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILH 219 (300)
Q Consensus 148 ~~L~~~~~-~~~ly~G~~~~---~pv~r----~~~~k~~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~ 219 (300)
+.+..... ...+..|.... .+... ...+.+...... +.......-.++.|++.++++++.+.+.--...
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSA-YRGGAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCcc-ccccccccccccccccceEEHHHHHHhCCCCcc--
Confidence 77755432 22333344321 11100 000000000000 000000101145678889999998876432222
Q ss_pred CCChhhHHHHHHHhhCCC
Q 022275 220 KFANEDVSLGSWFIGLEV 237 (300)
Q Consensus 220 ~~~~EDV~vG~~l~~l~v 237 (300)
....||..++.-+...|.
T Consensus 178 ~~~~eD~~l~~r~~~~G~ 195 (249)
T cd02525 178 LVRNEDAELNYRLRKAGY 195 (249)
T ss_pred cCccchhHHHHHHHHcCc
Confidence 234699999876655544
No 22
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=92.29 E-value=7.4 Score=34.17 Aligned_cols=184 Identities=15% Similarity=0.061 Sum_probs=87.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEeccccc
Q 022275 30 KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 109 (300)
Q Consensus 30 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~y 109 (300)
.+.+-|+|++.-....-.+.|+.-..+.. ....+.++++...+. +. ..+.+.+..++ .+......+
T Consensus 28 ~~~isVvip~~n~~~~l~~~l~si~~q~~-------~~~~~eiivvdd~s~--d~-t~~~~~~~~~~--~v~~i~~~~-- 93 (251)
T cd06439 28 LPTVTIIIPAYNEEAVIEAKLENLLALDY-------PRDRLEIIVVSDGST--DG-TAEIAREYADK--GVKLLRFPE-- 93 (251)
T ss_pred CCEEEEEEecCCcHHHHHHHHHHHHhCcC-------CCCcEEEEEEECCCC--cc-HHHHHHHHhhC--cEEEEEcCC--
Confidence 44577777775544444566666555431 122256666654332 22 22333322222 343333222
Q ss_pred CCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcC-CCCceeEEeeec-cccccCCCCc--cccCccc-c
Q 022275 110 HELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR-SKPRVYIGCMKS-GPVLSQKNVK--YHEPEYW-K 184 (300)
Q Consensus 110 ~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~ly~G~~~~-~pv~r~~~~k--~~~~~~~-~ 184 (300)
|. -|. ..+....+..+.+|++.+|+|+.+..+-|.+.+.... +.-.+..|.... .+........ |.....+ .
T Consensus 94 -~~-g~~-~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (251)
T cd06439 94 -RR-GKA-AALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKR 170 (251)
T ss_pred -CC-ChH-HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHH
Confidence 21 133 2344444445679999999999999777777776653 233344444321 1100000001 1000000 0
Q ss_pred cCCCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCC
Q 022275 185 FGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEV 237 (300)
Q Consensus 185 ~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v 237 (300)
+ ......+..+.|+++.+.+++.. ..-...-.||..++.-+...|.
T Consensus 171 ~-~~~~~~~~~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~ 216 (251)
T cd06439 171 A-ESRLGSTVGANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGY 216 (251)
T ss_pred H-HHhcCCeeeecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCC
Confidence 0 00011233366777777777665 1111223699999877755543
No 23
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=92.21 E-value=3.5 Score=35.60 Aligned_cols=118 Identities=13% Similarity=0.025 Sum_probs=64.9
Q ss_pred HHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCc--eeEEeee---cccc---ccCC--CCccccCc-ccccCCCC
Q 022275 121 STAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPR--VYIGCMK---SGPV---LSQK--NVKYHEPE-YWKFGEEG 189 (300)
Q Consensus 121 ~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~--ly~G~~~---~~pv---~r~~--~~k~~~~~-~~~~~y~~ 189 (300)
..+.+..+.+|++.+|+|+++..+.|..++......+. ...|... .... .+.. ....+... ... ..
T Consensus 77 n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 153 (234)
T cd06421 77 NNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG---RD 153 (234)
T ss_pred HHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH---Hh
Confidence 44444458899999999999999888888776543222 2222211 0000 0000 00001000 000 00
Q ss_pred CCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCC--CeEeCCCC
Q 022275 190 NKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE--VEHIDDRN 244 (300)
Q Consensus 190 ~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~--v~~~~~~~ 244 (300)
.....++.|++.++++++++.+-.-. .....||..++.-+...| +...+...
T Consensus 154 ~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~ 207 (234)
T cd06421 154 RWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPL 207 (234)
T ss_pred hcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCcc
Confidence 11245678999999999998874322 223479999998875554 44445443
No 24
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=91.84 E-value=10 Score=34.75 Aligned_cols=127 Identities=15% Similarity=0.129 Sum_probs=66.8
Q ss_pred HHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCc-eeEEeeec--c-ccc-cCC------------CCccccC-c
Q 022275 120 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPR-VYIGCMKS--G-PVL-SQK------------NVKYHEP-E 181 (300)
Q Consensus 120 l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~-ly~G~~~~--~-pv~-r~~------------~~k~~~~-~ 181 (300)
...+.+..+.+|++..|+|+.+...-|..++......+. +..|.+.. . ... ... ...|... .
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 344444457899999999999988777777765432222 22222210 0 000 000 0011110 0
Q ss_pred cc--ccCCCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHH--hhCCCeEeCCCCcc
Q 022275 182 YW--KFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRNMC 246 (300)
Q Consensus 182 ~~--~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l--~~l~v~~~~~~~f~ 246 (300)
.. ....+.....+++.|++.++++++...+---...+.....||+-+..-+ +|..+..++.....
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~ 223 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVG 223 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEE
Confidence 00 0000011234567899999999999888543344444457998887555 45555554444333
No 25
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=91.47 E-value=1.7 Score=35.05 Aligned_cols=117 Identities=12% Similarity=0.045 Sum_probs=64.9
Q ss_pred EEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcE-EEEecccccCCch
Q 022275 35 IGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF-LRLEHIEGYHELS 113 (300)
Q Consensus 35 i~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DI-l~~df~D~y~nLt 113 (300)
+.|.|-+...+||+.+++..... ++.+-|+-|......+ ...+......+... ...+..-+--.-.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~~~--~~~~~~~~~~~~~~~~~~~l~~gEiGC~ 68 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKDLS--EEELAALYDALFLPRYGRPLTPGEIGCF 68 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEeccccccCC--HHHHHHHhHHHhhhhcCCCCChhhHHHH
Confidence 35567788889999999855433 3345566665432111 11111111100000 0001111111113
Q ss_pred HHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCCccccCcccccCCCCCCCC
Q 022275 114 AKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYF 193 (300)
Q Consensus 114 ~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~~~~~~~~~~y~~~~yP 193 (300)
+-.+..++-+.+ .+.++.+-..||+.+..+
T Consensus 69 lSH~~~w~~~~~-~~~~~alIlEDDv~~~~~------------------------------------------------- 98 (128)
T cd06532 69 LSHYKLWQKIVE-SNLEYALILEDDAILDPD------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHHH-cCCCeEEEEccCcEECCC-------------------------------------------------
Confidence 334445555443 366889999999988766
Q ss_pred CccccceeeecHHHHHHHHHhCCc
Q 022275 194 RHATGQIYAISKDLATYISINQPI 217 (300)
Q Consensus 194 ~Y~~G~gYvlS~~~~~~l~~~~~~ 217 (300)
+..||++|+..|++|++....
T Consensus 99 ---~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 ---GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred ---CceEEEeCHHHHHHHHHhCCC
Confidence 346899999999999987654
No 26
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=91.09 E-value=4.7 Score=32.09 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=64.3
Q ss_pred cEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHH
Q 022275 69 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 148 (300)
Q Consensus 69 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~ 148 (300)
.+.++++-..+. + ...+.+++-.+....+......++. .+.. ++..+.+....+|++.+|||.++..+.|..
T Consensus 27 ~~eiivvdd~s~--d-~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~----~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGST--D-ETEEILEEYAESDPNIRYIRNPENL-GFSA----ARNRGIKHAKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS-S--S-SHHHHHHHHHCCSTTEEEEEHCCCS-HHHH----HHHHHHHH--SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEeccccc--c-ccccccccccccccccccccccccc-cccc----cccccccccceeEEEEeCCCceEcHHHHHH
Confidence 345665554442 2 2233344333334556555554443 2222 233333334566999999999999987766
Q ss_pred HHhhcCC-CCceeEEeee--ccc--cccCCCC--ccccCcccccCCCCCCCCCccccceeeecHHHHHHH
Q 022275 149 TLSRHRS-KPRVYIGCMK--SGP--VLSQKNV--KYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYI 211 (300)
Q Consensus 149 ~L~~~~~-~~~ly~G~~~--~~p--v~r~~~~--k~~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l 211 (300)
+++.... ...+.+|... ... ....... .+..............-..++.|++-++++++.+++
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 99 LVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 6655433 3345555532 111 1011110 011110000000112334567888999999988764
No 27
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.58 E-value=9.6 Score=32.17 Aligned_cols=154 Identities=13% Similarity=0.033 Sum_probs=78.6
Q ss_pred cEEEEEEeecCCCCChHHHHhHHHHHhhCC-cEEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHH
Q 022275 69 GIIIRFMIGHSATSNSILDKAIDSEDAQHK-DFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 147 (300)
Q Consensus 69 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~-DIl~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 147 (300)
.+.++++-..++ ++ ..+.+++-..++. .+.......+.. +. ..+.......+.+|++..|+|..+.++.|.
T Consensus 27 ~~eiiVvddgS~--d~-t~~~~~~~~~~~~~~~~~~~~~~~~G----~~-~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~ 98 (214)
T cd04196 27 NDELIISDDGST--DG-TVEIIKEYIDKDPFIIILIRNGKNLG----VA-RNFESLLQAADGDYVFFCDQDDIWLPDKLE 98 (214)
T ss_pred CeEEEEEeCCCC--CC-cHHHHHHHHhcCCceEEEEeCCCCcc----HH-HHHHHHHHhCCCCEEEEECCCcccChhHHH
Confidence 466777654443 22 2334444444453 233333322221 11 122333445689999999999999988888
Q ss_pred HHHhh-c-CCCCceeEEeee----ccccccCCCCccccCcccc--cCCCCCCCCCccccceeeecHHHHHHHHHhCCccC
Q 022275 148 TTLSR-H-RSKPRVYIGCMK----SGPVLSQKNVKYHEPEYWK--FGEEGNKYFRHATGQIYAISKDLATYISINQPILH 219 (300)
Q Consensus 148 ~~L~~-~-~~~~~ly~G~~~----~~pv~r~~~~k~~~~~~~~--~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~ 219 (300)
+++.. . .+...++.|... ...... . .+....... ..+.......++.|++.++.+++++.+.......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~- 174 (214)
T cd04196 99 RLLKAFLKDDKPLLVYSDLELVDENGNPIG--E-SFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELLELALPFPDAD- 174 (214)
T ss_pred HHHHHHhcCCCceEEecCcEEECCCCCCcc--c-ccccccccCCccCHHHHHHhCccCCceeeEEHHHHHhhccccccc-
Confidence 88775 2 233334444321 111110 0 000000000 0000012234567999999999998876543222
Q ss_pred CCChhhHHHHHHHhhC
Q 022275 220 KFANEDVSLGSWFIGL 235 (300)
Q Consensus 220 ~~~~EDV~vG~~l~~l 235 (300)
...||.++...+...
T Consensus 175 -~~~~D~~~~~~~~~~ 189 (214)
T cd04196 175 -VIMHDWWLALLASAF 189 (214)
T ss_pred -cccchHHHHHHHHHc
Confidence 457898887766543
No 28
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=90.43 E-value=7.1 Score=30.99 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=49.4
Q ss_pred HHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCC--ceeEEeeec---c-ccccC-CCCccccCcccccC-CCCC
Q 022275 119 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKP--RVYIGCMKS---G-PVLSQ-KNVKYHEPEYWKFG-EEGN 190 (300)
Q Consensus 119 ~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~--~ly~G~~~~---~-pv~r~-~~~k~~~~~~~~~~-y~~~ 190 (300)
.+.++.+..+.+|++.+|+|..+....|..++......+ .+..|.... . ..... ...++......... ....
T Consensus 69 ~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
T cd06423 69 ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSAL 148 (180)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhee
Confidence 445555556899999999999998877777744443222 233333321 1 01000 00011110000000 0012
Q ss_pred CCCCccccceeeecHHHHHHHH
Q 022275 191 KYFRHATGQIYAISKDLATYIS 212 (300)
Q Consensus 191 ~yP~Y~~G~gYvlS~~~~~~l~ 212 (300)
..+..+.|.+++++++++..+-
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 149 GGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred cceeecCchHHHHHHHHHHHhC
Confidence 3445678999999999888764
No 29
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=89.52 E-value=20 Score=34.33 Aligned_cols=191 Identities=12% Similarity=0.038 Sum_probs=107.6
Q ss_pred CeEEEEEEeCCCCCH-HHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEecccc
Q 022275 30 KVFVVIGINTAFSSR-KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEG 108 (300)
Q Consensus 30 ~~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~ 108 (300)
.+.+-|+|++--.+. --.+.++..=..+ -....++.+...+. +..-+.+++-.+++++.+.....
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~-- 118 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP-- 118 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec--
Confidence 477888888865544 3334444433332 12256766665442 33455566666666544444421
Q ss_pred cCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCce-eEEeeeccccccCCC--Ccccc----Cc
Q 022275 109 YHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV-YIGCMKSGPVLSQKN--VKYHE----PE 181 (300)
Q Consensus 109 y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~l-y~G~~~~~pv~r~~~--~k~~~----~~ 181 (300)
-.+..-| ..++.++....+.++|+..|.|+.+..+.|.+.+......+.. .+|.. ..+... ..+.. -+
T Consensus 119 ~~~~~gK-~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~----~~~~~~~~~~~l~~~~~~~ 193 (439)
T COG1215 119 EKKNGGK-AGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTP----RIRNRPDPSNLLGRIQAIE 193 (439)
T ss_pred cccCccc-hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCc----eeeecCChhhhcchhcchh
Confidence 0121222 3456777776679999999999999999999998776433322 33332 111100 01100 00
Q ss_pred c-------cccCCCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhh--CCCeEeCCC
Q 022275 182 Y-------WKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIG--LEVEHIDDR 243 (300)
Q Consensus 182 ~-------~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~--l~v~~~~~~ 243 (300)
. .... .....+..|.|++.++.+++++.+-.- .+..=-||.-+|..+.. ..+...+..
T Consensus 194 ~~~~~~~~~~~~-~~~g~~~~~~G~~~~~rr~aL~~~g~~---~~~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 194 YLSAFYFRLRAA-SKGGLISFLSGSSSAFRRSALEEVGGW---LEDTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred hhhhHHHhhhhh-hhcCCeEEEcceeeeEEHHHHHHhCCC---CCCceeccHHHHHHHHHCCCeEEEeecc
Confidence 0 0000 012357779999999999999888721 12222599999988854 445555544
No 30
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=88.43 E-value=9.7 Score=34.58 Aligned_cols=186 Identities=11% Similarity=0.015 Sum_probs=94.7
Q ss_pred EEEeCCCCCHH-HHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHh----HHHHHhhCCcEEEEeccccc
Q 022275 35 IGINTAFSSRK-RRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKA----IDSEDAQHKDFLRLEHIEGY 109 (300)
Q Consensus 35 i~V~S~~~~~~-rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~----l~~E~~~~~DIl~~df~D~y 109 (300)
|+|++.-...+ -.+.++........ ......+.+ |++-.+. +++.... +.+=.+++..-+.+-+...-
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~----~~~~~~~eI-~vldD~~--d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~ 75 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAK----TGLADHFDF-FILSDTR--DPDIWLAEEAAWLDLCEELGAQGRIYYRRRR 75 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHh----cCCcCceEE-EEECCCC--ChHHHHHHHHHHHHHHHHhCCCCcEEEEEcC
Confidence 66777655554 56667766642100 000124566 8876543 2222111 11111223333333333334
Q ss_pred CCchHHHHHHHHHHHhc-CCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccc-cCCCC---cc-------
Q 022275 110 HELSAKTKIFFSTAVAK-WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVL-SQKNV---KY------- 177 (300)
Q Consensus 110 ~nLt~Ktl~~l~w~~~~-~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~-r~~~~---k~------- 177 (300)
.|.-.|+-..-...... .+.+|++-.|.|+.+..+.|.+.+......+. +|-+. .|.. .+..+ ++
T Consensus 76 ~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq-~~~~~~n~~~~~~~~~~~~~~~ 152 (254)
T cd04191 76 ENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQ-TAPKLIGAETLFARLQQFANRL 152 (254)
T ss_pred CCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEe-CCceeECCCCHHHHHHHHHHHH
Confidence 44445665544444332 57899999999999999999998876532222 23332 1111 11111 00
Q ss_pred ccCc------ccccCCCCCCCCCccccceeeecHHHHHHHHHhC-----Ccc-CCCChhhHHHHHHHhhCC
Q 022275 178 HEPE------YWKFGEEGNKYFRHATGQIYAISKDLATYISINQ-----PIL-HKFANEDVSLGSWFIGLE 236 (300)
Q Consensus 178 ~~~~------~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~-----~~~-~~~~~EDV~vG~~l~~l~ 236 (300)
|.+. .|. .--.+|.|...++.++++..+.... .-+ ...-.||..+|+.+...|
T Consensus 153 ~~~~~~~~~~~~~------~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G 217 (254)
T cd04191 153 YGPVFGRGLAAWQ------GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAG 217 (254)
T ss_pred HHHHHHHHHHHhc------CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcC
Confidence 0000 010 1123467999999999887753211 111 122369999999886544
No 31
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=88.03 E-value=0.66 Score=42.25 Aligned_cols=51 Identities=20% Similarity=0.145 Sum_probs=39.8
Q ss_pred ccceeeecHHHHHHHHHhCC----ccCCCChhhHHHHHHHhhCCCeEeCCCCccc
Q 022275 197 TGQIYAISKDLATYISINQP----ILHKFANEDVSLGSWFIGLEVEHIDDRNMCC 247 (300)
Q Consensus 197 ~G~gYvlS~~~~~~l~~~~~----~~~~~~~EDV~vG~~l~~l~v~~~~~~~f~~ 247 (300)
+|+|++||..+|+.|.+... ..+.+.--|--|..|++.+++.....++|+.
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ 66 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQ 66 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCcee
Confidence 79999999999999998532 1233444788999999889887777778765
No 32
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=87.26 E-value=3.2 Score=35.14 Aligned_cols=115 Identities=12% Similarity=0.088 Sum_probs=63.5
Q ss_pred EEEEeCCceeecHHHHHHHHhhcC-CCCceeEEeeeccccccCCCCccccCcc-cc--cC---CCCCCCCCccccceeee
Q 022275 131 FYVKVDDDVHVNLGMLATTLSRHR-SKPRVYIGCMKSGPVLSQKNVKYHEPEY-WK--FG---EEGNKYFRHATGQIYAI 203 (300)
Q Consensus 131 fvlK~DDD~fVn~~~L~~~L~~~~-~~~~ly~G~~~~~pv~r~~~~k~~~~~~-~~--~~---y~~~~yP~Y~~G~gYvl 203 (300)
||+-+|+|+-+..+-|.+.+.... ++-.+..|.+...+. ...-.++...+. +. .. ......+.++.|++.++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 79 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNR-GSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLF 79 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCC-CChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceee
Confidence 689999999999998888876654 222222222211000 000001111100 00 00 01124566789999999
Q ss_pred cHHHHHHHHHhCCccCCCChhhHHHHHHHh--hCCCeEeCCCCcccc
Q 022275 204 SKDLATYISINQPILHKFANEDVSLGSWFI--GLEVEHIDDRNMCCQ 248 (300)
Q Consensus 204 S~~~~~~l~~~~~~~~~~~~EDV~vG~~l~--~l~v~~~~~~~f~~~ 248 (300)
++++++.+.--. -.....||..++.-+. +..+..+++....+.
T Consensus 80 r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~ 124 (193)
T PF13632_consen 80 RREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTE 124 (193)
T ss_pred eHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeee
Confidence 999999775211 1234469999997774 455566666544433
No 33
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=83.42 E-value=26 Score=29.49 Aligned_cols=100 Identities=13% Similarity=0.034 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcC-CCCceeEEeeeccccccCCCCccccCcccccCCCCCCCCCcc
Q 022275 118 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR-SKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHA 196 (300)
Q Consensus 118 ~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~ly~G~~~~~pv~r~~~~k~~~~~~~~~~y~~~~yP~Y~ 196 (300)
.+++++. ..+.+|++..|+|..+..+.|..++.... +.-.++.|.. .. .. .
T Consensus 70 ~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~------~~---------------~~-~----- 121 (202)
T cd04185 70 EGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLV------LD---------------PD-G----- 121 (202)
T ss_pred HHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEeccee------Ec---------------CC-C-----
Confidence 4556665 56889999999999999887777665543 2212221111 00 00 0
Q ss_pred ccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCCe-EeCCCCcc
Q 022275 197 TGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVE-HIDDRNMC 246 (300)
Q Consensus 197 ~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v~-~~~~~~f~ 246 (300)
.++|.++++++++.+--..... ....||+.++.-+...|.. ..+...+.
T Consensus 122 ~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G~~i~~~~~~~~ 171 (202)
T cd04185 122 SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAGPGIYVPDAVVV 171 (202)
T ss_pred ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcCCcEEecceEEE
Confidence 3456789999888763211111 2346999998777544432 34443343
No 34
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=82.58 E-value=17 Score=30.16 Aligned_cols=135 Identities=10% Similarity=0.076 Sum_probs=71.8
Q ss_pred cEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHH
Q 022275 69 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 148 (300)
Q Consensus 69 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~ 148 (300)
.+.++.+-+.+. +. ..+.++....++..+..+....++. |. .+++.+.+....+|++.+|+|.......|..
T Consensus 29 ~~eiivvdd~s~--d~-t~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGST--DR-TLEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCC--cc-HHHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 456666655443 22 2334444445565565555433321 22 3344444445679999999999998887777
Q ss_pred HHhhcCCCCceeEEeeecc--ccccCCCCccccC-cccccCCCCCCCCCccccceeeecHHHHHHHHHhC
Q 022275 149 TLSRHRSKPRVYIGCMKSG--PVLSQKNVKYHEP-EYWKFGEEGNKYFRHATGQIYAISKDLATYISINQ 215 (300)
Q Consensus 149 ~L~~~~~~~~ly~G~~~~~--pv~r~~~~k~~~~-~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~ 215 (300)
.++...+...+..|..... +....-.++.+.. .... ....-+...|+..++++++++.+..-.
T Consensus 101 l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~~~~i~~~d 166 (181)
T cd04187 101 MLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL----SGVDIPDNGGDFRLMDRKVVDALLLLP 166 (181)
T ss_pred HHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH----cCCCCCCCCCCEEEEcHHHHHHHHhcC
Confidence 7766544445666653211 1100000011100 0000 112234467888999999999887543
No 35
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=81.60 E-value=34 Score=29.56 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=61.2
Q ss_pred HHHHHHhc--CCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCCccccCc-ccc----cC--CC-
Q 022275 119 FFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPE-YWK----FG--EE- 188 (300)
Q Consensus 119 ~l~w~~~~--~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~~~~~-~~~----~~--y~- 188 (300)
++.++.+. .+.+|++..|+|+.+..+.|.+++.... .+. +|.+......++....++... .+. +. .+
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45666553 3579999999999999999988887653 222 122211000011111111000 000 00 00
Q ss_pred -CCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCC
Q 022275 189 -GNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEV 237 (300)
Q Consensus 189 -~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v 237 (300)
...--.++.|++.+++++++..+---.. .+..||+-++.-+...|.
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~ 196 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGY 196 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCc
Confidence 0000124678889999999988743222 234799999987765543
No 36
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=78.31 E-value=39 Score=35.49 Aligned_cols=206 Identities=12% Similarity=0.031 Sum_probs=104.8
Q ss_pred CCCCCCeEEEEEEeCCCCCHH-HHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHH--HHhHHHHHhhCC---
Q 022275 25 NSRRPKVFVVIGINTAFSSRK-RRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSIL--DKAIDSEDAQHK--- 98 (300)
Q Consensus 25 ~c~~~~~~lli~V~S~~~~~~-rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~--~~~l~~E~~~~~--- 98 (300)
......+.+.|+|++.-...+ -+..|+.+..+-.. ......+.+ |++..+.+++... .+.+.+-.++|+
T Consensus 118 ~~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~ 192 (691)
T PRK05454 118 PPPPPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEG 192 (691)
T ss_pred CCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCC
Confidence 444556778888888765543 34677777764321 001234555 8887664322111 111222233443
Q ss_pred cEEEEecccccCCchHHHHHHHHHHHh-cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCCcc
Q 022275 99 DFLRLEHIEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKY 177 (300)
Q Consensus 99 DIl~~df~D~y~nLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~ 177 (300)
.|.. ...-.|.-.|.-..-.|... ..+++|++-.|-|+.+..+.|.+.+......++ +|-+...+...+..+ +
T Consensus 193 ~i~y---r~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~s-l 266 (691)
T PRK05454 193 RIFY---RRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADT-L 266 (691)
T ss_pred cEEE---EECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCC-H
Confidence 3333 22334444577665556554 357899999999999999999998876532222 355432222212111 1
Q ss_pred ccC-ccc--ccCC-----CCCC----CCCccccceeeecHHHHHHHHHhC--CccCC----CChhhHHHHHHHhhC--CC
Q 022275 178 HEP-EYW--KFGE-----EGNK----YFRHATGQIYAISKDLATYISINQ--PILHK----FANEDVSLGSWFIGL--EV 237 (300)
Q Consensus 178 ~~~-~~~--~~~y-----~~~~----yP~Y~~G~gYvlS~~~~~~l~~~~--~~~~~----~~~EDV~vG~~l~~l--~v 237 (300)
+-- .++ .+ | .+-. --....|..-++.+++......-. .-... .--||...|..+... .|
T Consensus 267 faR~qqf~~~~-y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV 345 (691)
T PRK05454 267 FARLQQFATRV-YGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGV 345 (691)
T ss_pred HHHHHHHHHHH-HHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEE
Confidence 100 000 00 0 0000 000124666788888766553110 01122 235899999988544 45
Q ss_pred eEeCC
Q 022275 238 EHIDD 242 (300)
Q Consensus 238 ~~~~~ 242 (300)
...++
T Consensus 346 ~~~pd 350 (691)
T PRK05454 346 WLAPD 350 (691)
T ss_pred EEcCc
Confidence 55555
No 37
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=77.58 E-value=41 Score=28.12 Aligned_cols=115 Identities=10% Similarity=0.006 Sum_probs=59.3
Q ss_pred HHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcC--CCCceeEEeeec--cccccCCCCccccCcc--cccCCCCCCCC
Q 022275 120 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR--SKPRVYIGCMKS--GPVLSQKNVKYHEPEY--WKFGEEGNKYF 193 (300)
Q Consensus 120 l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~--~~~~ly~G~~~~--~pv~r~~~~k~~~~~~--~~~~y~~~~yP 193 (300)
+..+....+.+|++..|+|.++..+.|...+.... +.-.++.|.+.. ..... ...+. .|.. ....+....-
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~- 148 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGND-IGKRR-LPTSHDDILKFARRRS- 148 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCe-ecccc-CCCCHHHHHHHhccCC-
Confidence 44444556899999999999999988888777643 233344444321 10000 00000 1100 0000000011
Q ss_pred CccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHh--hCCCeEeC
Q 022275 194 RHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFI--GLEVEHID 241 (300)
Q Consensus 194 ~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~--~l~v~~~~ 241 (300)
+ ..|++.++.+.++..+-.-. .....||..+...+. +.++...+
T Consensus 149 ~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~ 194 (201)
T cd04195 149 P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLP 194 (201)
T ss_pred C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceeccc
Confidence 1 24566777777766542211 224589999987774 44444443
No 38
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=72.15 E-value=32 Score=31.76 Aligned_cols=137 Identities=13% Similarity=0.045 Sum_probs=74.4
Q ss_pred CCcEEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCC-ceeEEeee---ccc---c
Q 022275 97 HKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKP-RVYIGCMK---SGP---V 169 (300)
Q Consensus 97 ~~DIl~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~-~ly~G~~~---~~p---v 169 (300)
+.++..+...++.-= .-=.-.+++.+.... .+|++-.++|+.+..+.|.++++.....+ ....|... ..+ .
T Consensus 55 ~~~v~~i~~~~NlG~-agg~n~g~~~a~~~~-~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLGF-AGGFNRGIKYALAKG-DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCccc-hhhhhHHHHHHhcCC-CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 677777665554320 000013556665421 12999999999999999988887654332 23333321 111 1
Q ss_pred ccCC-----CCccccCcccccC---CCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCC
Q 022275 170 LSQK-----NVKYHEPEYWKFG---EEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE 236 (300)
Q Consensus 170 ~r~~-----~~k~~~~~~~~~~---y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~ 236 (300)
.+.. ...|......... .+......+++|++-++++++++++---.. --++..||+-++.=+...|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcC
Confidence 1110 1112111100000 001122225789999999999999876333 2244689999998886655
No 39
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=72.03 E-value=54 Score=26.90 Aligned_cols=113 Identities=12% Similarity=-0.058 Sum_probs=63.1
Q ss_pred HHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhc--CCCCceeEEeeec-cccccCCCCccccCcccccCCCCCCCCCc
Q 022275 119 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH--RSKPRVYIGCMKS-GPVLSQKNVKYHEPEYWKFGEEGNKYFRH 195 (300)
Q Consensus 119 ~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~ly~G~~~~-~pv~r~~~~k~~~~~~~~~~y~~~~yP~Y 195 (300)
++..+.+..+.+|++..|+|..+..+.+...+... .+...+..|.... .+.......+...... ........+
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 141 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFL----DKFLLYGMP 141 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchh----hhHHhhcCc
Confidence 44555555678999999999999999888887333 2334455565321 0000000101000100 011133445
Q ss_pred cccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCC
Q 022275 196 ATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEV 237 (300)
Q Consensus 196 ~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v 237 (300)
..|++.++++++.+.+-.-... ....||..+..-+...+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~f~~~--~~~~~D~~~~~r~~~~g~ 181 (202)
T cd06433 142 ICHQATFFRRSLFEKYGGFDES--YRIAADYDLLLRLLLAGK 181 (202)
T ss_pred ccCcceEEEHHHHHHhCCCchh--hCchhhHHHHHHHHHcCC
Confidence 6788899999999887432221 123588887766654443
No 40
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=68.67 E-value=62 Score=26.43 Aligned_cols=133 Identities=11% Similarity=0.027 Sum_probs=69.3
Q ss_pred cEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHH
Q 022275 69 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 148 (300)
Q Consensus 69 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~ 148 (300)
...++.+-..+. + ...+.++....++..+.......+.. |. .++....++...+|++..|+|..+..+.|.+
T Consensus 28 ~~eiivvd~~s~--d-~~~~~~~~~~~~~~~~~~~~~~~n~G----~~-~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGST--D-GTAEIARELAARVPRVRVIRLSRNFG----KG-AAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCC--C-ChHHHHHHHHHhCCCeEEEEccCCCC----cc-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 345555554433 2 23444555556666665455444332 11 2344444545569999999999999988888
Q ss_pred HHhh-cCCCCceeEEeee--cc----ccccCCCCccccCcccccCCCCCCCCCccccceeeecHHHHHHHH
Q 022275 149 TLSR-HRSKPRVYIGCMK--SG----PVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 212 (300)
Q Consensus 149 ~L~~-~~~~~~ly~G~~~--~~----pv~r~~~~k~~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~ 212 (300)
++.. ......+..|... .. +..+. ...+....... .-...-.....|+.+++++++++.+.
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFNFLIR--LLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHHHHHH--HHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 8876 3344556666532 11 11100 00000000000 00011122346777899999999885
No 41
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=67.96 E-value=97 Score=28.21 Aligned_cols=164 Identities=12% Similarity=0.057 Sum_probs=89.1
Q ss_pred CCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcE-EE-EecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHH
Q 022275 67 EKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF-LR-LEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 144 (300)
Q Consensus 67 ~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DI-l~-~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~ 144 (300)
...+.++++=+.++ ....+.|.+-.+.++-+ +. .+......+.+ . +..-+.+..+.++++..|.|+++..+
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a---~-arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA---K-ARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHH---H-HHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 35667777655443 23345667767777766 32 22222233322 1 23444445689999999999999999
Q ss_pred HHHHHHh---hcCCC-CceeEEeee--c--cc--cccCCCCccc--cCcccccCCCCCCCC-CccccceeeecHHHHHHH
Q 022275 145 MLATTLS---RHRSK-PRVYIGCMK--S--GP--VLSQKNVKYH--EPEYWKFGEEGNKYF-RHATGQIYAISKDLATYI 211 (300)
Q Consensus 145 ~L~~~L~---~~~~~-~~ly~G~~~--~--~p--v~r~~~~k~~--~~~~~~~~y~~~~yP-~Y~~G~gYvlS~~~~~~l 211 (300)
.+.+.+. ..... ..++++-+. . .. ........|. .-+.. .....+.+. ....|++.+++++.-..+
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESF-ISGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHH-hhccccccccccccceEEEEEHHHHHHh
Confidence 9988888 33322 233333321 1 10 1000000010 00000 000011111 123468999999988777
Q ss_pred HHhCCccCCCChhhHHHHHHHhhCCCe
Q 022275 212 SINQPILHKFANEDVSLGSWFIGLEVE 238 (300)
Q Consensus 212 ~~~~~~~~~~~~EDV~vG~~l~~l~v~ 238 (300)
---......+..||.-++.-|...+..
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~ 210 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYK 210 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCc
Confidence 665566666679999999888766643
No 42
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=67.68 E-value=1.3e+02 Score=29.48 Aligned_cols=199 Identities=11% Similarity=0.064 Sum_probs=94.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEeccccc
Q 022275 30 KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 109 (300)
Q Consensus 30 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~y 109 (300)
.+.+-|+|++--....-++.|+.--.+.- +...+.++.+-..+. |+ ..+.+++-.+.+..+...- .+.
T Consensus 48 ~P~vsVIIP~yNe~~~l~~~l~sl~~q~y-------p~~~~eIiVVDd~St--D~-T~~il~~~~~~~~~v~v~~-~~~- 115 (439)
T TIGR03111 48 LPDITIIIPVYNSEDTLFNCIESIYNQTY-------PIELIDIILANNQST--DD-SFQVFCRAQNEFPGLSLRY-MNS- 115 (439)
T ss_pred CCCEEEEEEeCCChHHHHHHHHHHHhcCC-------CCCCeEEEEEECCCC--hh-HHHHHHHHHHhCCCeEEEE-eCC-
Confidence 45566777765444344555554333221 123345544433332 22 2333333334455442221 121
Q ss_pred CCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCc--eeEEeeeccccccCCCCc---cccCcccc
Q 022275 110 HELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPR--VYIGCMKSGPVLSQKNVK---YHEPEYWK 184 (300)
Q Consensus 110 ~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~--ly~G~~~~~pv~r~~~~k---~~~~~~~~ 184 (300)
| .-|.- ++.++.+..+.+|++..|+|..+..+.|.+.+......++ ...|.+...+-....... +...+...
T Consensus 116 -~-~Gka~-AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (439)
T TIGR03111 116 -D-QGKAK-ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEY 192 (439)
T ss_pred -C-CCHHH-HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHH
Confidence 1 22433 4566666678899999999999999998888866532222 223443211100000000 01110000
Q ss_pred cCCC-----------CCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHh---hCCCeEeCCCCcc
Q 022275 185 FGEE-----------GNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFI---GLEVEHIDDRNMC 246 (300)
Q Consensus 185 ~~y~-----------~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~---~l~v~~~~~~~f~ 246 (300)
+.|. ...-+..++|++.++.++++.++---.. ..-.||..++.-+. +-.+...++..+.
T Consensus 193 ~~y~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~---~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~ 265 (439)
T TIGR03111 193 FEYAQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNS---ETVGEDTDMTFQIRELLDGKVYLCENAIFY 265 (439)
T ss_pred HHHHHHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCC---CCcCccHHHHHHHHHhcCCeEEECCCCEEE
Confidence 0010 0011223678888899988876532111 12379999986553 3334334444443
No 43
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=67.13 E-value=83 Score=27.14 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=26.1
Q ss_pred HHHHHhcCCccEEEEeCCceeecHHHHHHHHhh
Q 022275 120 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSR 152 (300)
Q Consensus 120 l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~ 152 (300)
+....+..+.+|++.+|.|+.+..+.|...+..
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhh
Confidence 455555568999999999999999988885543
No 44
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=66.82 E-value=1.8e+02 Score=30.86 Aligned_cols=196 Identities=8% Similarity=-0.035 Sum_probs=99.5
Q ss_pred CCCCCCeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEe
Q 022275 25 NSRRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLE 104 (300)
Q Consensus 25 ~c~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~d 104 (300)
--..+.+.+-|+|+-.-...--.+.|...=.+.. -.++.++++...+ |+...+.+++-.++|.++..+.
T Consensus 57 l~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~ld--------YP~~eI~vi~~~n---D~~T~~~~~~l~~~~p~~~~v~ 125 (727)
T PRK11234 57 LYKPDEKPLAIMVPAWNETGVIGNMAELAATTLD--------YENYHIFVGTYPN---DPATQADVDAVCARFPNVHKVV 125 (727)
T ss_pred cccCCCCCEEEEEecCcchhhHHHHHHHHHHhCC--------CCCeEEEEEecCC---ChhHHHHHHHHHHHCCCcEEEE
Confidence 3355667888888875544444444443211111 1235666655422 2333445555567788764333
Q ss_pred cccccCCchHHHHHHHHHHHh-c------C--CccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCC
Q 022275 105 HIEGYHELSAKTKIFFSTAVA-K------W--DADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNV 175 (300)
Q Consensus 105 f~D~y~nLt~Ktl~~l~w~~~-~------~--~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~ 175 (300)
... ..| +-|.-+ ++|+.. + . .++.++-.|-|+.|.++.|. .+....+...+.-+... |..+. .+
T Consensus 126 ~~~-~g~-~gKa~a-LN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~--p~~~~-~~ 198 (727)
T PRK11234 126 CAR-PGP-TSKADC-LNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVY--PFERE-WT 198 (727)
T ss_pred eCC-CCC-CCHHHH-HHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeeccc--CCCcc-HH
Confidence 333 122 457653 455544 1 1 34557779999999999996 33333222222212111 11111 11
Q ss_pred cc----ccCccc-ccCCC---CC--CCCCccccceeeecHHHHHHHHHhC---CccCCCChhhHHHHHHHhhCCCe
Q 022275 176 KY----HEPEYW-KFGEE---GN--KYFRHATGQIYAISKDLATYISINQ---PILHKFANEDVSLGSWFIGLEVE 238 (300)
Q Consensus 176 k~----~~~~~~-~~~y~---~~--~yP~Y~~G~gYvlS~~~~~~l~~~~---~~~~~~~~EDV~vG~~l~~l~v~ 238 (300)
.| |..+.. .+.-. .. .-+-.++|.|..+|+.+++.+.+.. ......--||.-+|.-++..|.+
T Consensus 199 ~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~ 274 (727)
T PRK11234 199 HFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMR 274 (727)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCE
Confidence 11 111100 00000 00 1233488999999998877776654 22233336999999988766543
No 45
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=66.31 E-value=46 Score=29.91 Aligned_cols=126 Identities=8% Similarity=-0.043 Sum_probs=62.0
Q ss_pred HHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCC--CceeEEee--eccccccCC---CCccccCcccccCCC-CC
Q 022275 119 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSK--PRVYIGCM--KSGPVLSQK---NVKYHEPEYWKFGEE-GN 190 (300)
Q Consensus 119 ~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~--~~ly~G~~--~~~pv~r~~---~~k~~~~~~~~~~y~-~~ 190 (300)
+++++.+ .+++|++..|||+.+..+.|..++...... .-..+|.. ........+ ...+..+. ...... ..
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQ-ISLDGLTTP 142 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceee-ecccccCCc
Confidence 5666654 378999999999999988777776654322 12222321 100000000 00010010 000000 00
Q ss_pred CCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhh--CCCeEeCCCCccc
Q 022275 191 KYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIG--LEVEHIDDRNMCC 247 (300)
Q Consensus 191 ~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~--l~v~~~~~~~f~~ 247 (300)
.-..++.++|-++++++++.+---...+ .+..||+-+..-+.. ..+-..++..+.|
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H 200 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYGIPLYIDPDIVLEH 200 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCCCEEEEeCCEEEEE
Confidence 1123445666789999998874322222 235689887766544 3344444434433
No 46
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=66.10 E-value=1.5e+02 Score=29.85 Aligned_cols=191 Identities=9% Similarity=-0.057 Sum_probs=90.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEecccc
Q 022275 29 PKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEG 108 (300)
Q Consensus 29 ~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~ 108 (300)
+.+.+-|+|+..-...--.+.|+..=.+.. -...+++++...+ ++...+.+++=.++|..+...-. +.
T Consensus 64 ~~p~vaIlIPA~NE~~vI~~~l~s~L~~ld--------Y~~~eIiVv~d~n---dd~T~~~v~~l~~~~p~v~~vv~-~~ 131 (504)
T PRK14716 64 PEKRIAIFVPAWREADVIGRMLEHNLATLD--------YENYRIFVGTYPN---DPATLREVDRLAARYPRVHLVIV-PH 131 (504)
T ss_pred CCCceEEEEeccCchhHHHHHHHHHHHcCC--------CCCeEEEEEECCC---ChhHHHHHHHHHHHCCCeEEEEe-CC
Confidence 355677777665433223344443311111 1234454444222 22223333332455766533222 21
Q ss_pred cCCchHHHHHHHHHHHh-------c--CCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCCcc--
Q 022275 109 YHELSAKTKIFFSTAVA-------K--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKY-- 177 (300)
Q Consensus 109 y~nLt~Ktl~~l~w~~~-------~--~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~-- 177 (300)
.+.+-|.- .+.|+.+ + .++++++..|-|..++++.|..+.... +...+.-..+...+ .+.+.|
T Consensus 132 -~gp~~Ka~-aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~-~~~~~VQ~pv~~~~---~~~~~~~a 205 (504)
T PRK14716 132 -DGPTSKAD-CLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL-PRHDFVQLPVFSLP---RDWGEWVA 205 (504)
T ss_pred -CCCCCHHH-HHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc-CCCCEEecceeccC---CchhHHHH
Confidence 22345665 3444432 1 246999999999999999987543222 22222111111000 011111
Q ss_pred --ccCcccc-c--CCC---CCCCCCccccceeeecHHHHHHHHHhCC--ccC-CCChhhHHHHHHHhhCCC
Q 022275 178 --HEPEYWK-F--GEE---GNKYFRHATGQIYAISKDLATYISINQP--ILH-KFANEDVSLGSWFIGLEV 237 (300)
Q Consensus 178 --~~~~~~~-~--~y~---~~~yP~Y~~G~gYvlS~~~~~~l~~~~~--~~~-~~~~EDV~vG~~l~~l~v 237 (300)
|..+... + ..+ .-.-+..++|.|+++++++++.+..... ... ..--||.-+|.-+...|.
T Consensus 206 g~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~ 276 (504)
T PRK14716 206 GTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGF 276 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCC
Confidence 1100000 0 000 0012233789999999999999865321 122 233699999988865554
No 47
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=65.73 E-value=73 Score=25.99 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=57.1
Q ss_pred HHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCCccccCcccccCCCCCCCCCccccc
Q 022275 120 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQ 199 (300)
Q Consensus 120 l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~~~~~~~~~~y~~~~yP~Y~~G~ 199 (300)
+..+.+..+.+|++..|+|..+..+.|.+.++...+. ....|... ..... .-.....|+
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~------------~~~~~--------~~~~~~~~~ 129 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRV------------LLNEK--------LTERGIRGC 129 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEeccee------------ecccc--------cceeEeccc
Confidence 3444455678999999999999988888777665322 22223211 00000 000224577
Q ss_pred eeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCC
Q 022275 200 IYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE 236 (300)
Q Consensus 200 gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~ 236 (300)
++++.+..+..+..-.........||+.++.-+...|
T Consensus 130 ~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 130 NMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred eEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 7888888776443332322233479999988776665
No 48
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=64.59 E-value=97 Score=27.02 Aligned_cols=120 Identities=13% Similarity=0.046 Sum_probs=64.7
Q ss_pred HHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCC-Cce-eEEe-eeccccccCCCCccccCccc-ccC-----CCC
Q 022275 119 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSK-PRV-YIGC-MKSGPVLSQKNVKYHEPEYW-KFG-----EEG 189 (300)
Q Consensus 119 ~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~-~~l-y~G~-~~~~pv~r~~~~k~~~~~~~-~~~-----y~~ 189 (300)
++....+..+.+|++.+|+|+.+..+.|.+.+...... ..+ ++|. +...........+.+..+.. .+. ...
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566555678999999999999999998888765322 232 2222 21100000000011100000 000 000
Q ss_pred CCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCC--CeEeC
Q 022275 190 NKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE--VEHID 241 (300)
Q Consensus 190 ~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~--v~~~~ 241 (300)
...+..++|++.++++++++.+---.. ....||..++.-+...| +...+
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~~ 205 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVLN 205 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEec
Confidence 123334678899999999888743221 22369999998775444 44443
No 49
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=63.76 E-value=2e+02 Score=30.29 Aligned_cols=130 Identities=14% Similarity=0.113 Sum_probs=68.5
Q ss_pred CchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCce-eEEeee----ccccccCCCCccccCcc-cc
Q 022275 111 ELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV-YIGCMK----SGPVLSQKNVKYHEPEY-WK 184 (300)
Q Consensus 111 nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~l-y~G~~~----~~pv~r~~~~k~~~~~~-~~ 184 (300)
|.-.|.- .+..+.+..+.+|++..|.|+.+..+.|.+.+......+++ +++... ..|..++-......+.+ ..
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3344643 34565566788999999999999998888877654222222 111110 11111110000000100 00
Q ss_pred cCC----CC-C-CCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCC--eEeCCCCc
Q 022275 185 FGE----EG-N-KYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEV--EHIDDRNM 245 (300)
Q Consensus 185 ~~y----~~-~-~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v--~~~~~~~f 245 (300)
| | ++ + .-.+++.|++.++.+++++.+---.. ..-.||..+|..+...|- ...++...
T Consensus 291 f-~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~---~~vtED~~l~~rL~~~G~~~~y~~~~~~ 355 (713)
T TIGR03030 291 F-YGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG---ETVTEDAETALKLHRRGWNSAYLDRPLI 355 (713)
T ss_pred H-HHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC---CCcCcHHHHHHHHHHcCCeEEEeccccc
Confidence 0 0 00 0 01245679999999999887632111 123699999998865554 44444444
No 50
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=62.69 E-value=35 Score=32.53 Aligned_cols=92 Identities=14% Similarity=0.257 Sum_probs=53.3
Q ss_pred HHHHHHhcCCccEEEEeCCceeecHH---HHHHHHhhcCCCCceeEEeeeccccccCCCCcccc---CcccccCCCCCCC
Q 022275 119 FFSTAVAKWDADFYVKVDDDVHVNLG---MLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHE---PEYWKFGEEGNKY 192 (300)
Q Consensus 119 ~l~w~~~~~~~~fvlK~DDD~fVn~~---~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~~~---~~~~~~~y~~~~y 192 (300)
++.|+....++++++.+|||..+.++ -+.+.|..+...+.++ ++.+.- +.+.+..+ |..+ ..
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~N---dnG~~~~~~~~~~~l-------yr 155 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAWN---DNGKEHFVDDTPSLL-------YR 155 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEeec---cCCcccccCCCcceE-------EE
Confidence 56666654579999999999999998 4455555444444554 332100 01111111 2211 12
Q ss_pred CCccccceeeecHHHHHHHHHhCCccCCCChhh
Q 022275 193 FRHATGQIYAISKDLATYISINQPILHKFANED 225 (300)
Q Consensus 193 P~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~ED 225 (300)
-.|+.|.|+++.+++-+.+ ....+....||
T Consensus 156 s~ff~glGWml~r~~W~e~---~~~wp~~~WD~ 185 (334)
T cd02514 156 TDFFPGLGWMLTRKLWKEL---EPKWPKAFWDD 185 (334)
T ss_pred ecCCCchHHHHHHHHHHHh---CCCCCCCChHH
Confidence 2456799999999999888 23444444444
No 51
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=62.49 E-value=90 Score=25.93 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=58.4
Q ss_pred HHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcC--CCCceeEEeeec---cccccCCCCccccCcccccCCCCCC-C
Q 022275 119 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR--SKPRVYIGCMKS---GPVLSQKNVKYHEPEYWKFGEEGNK-Y 192 (300)
Q Consensus 119 ~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~--~~~~ly~G~~~~---~pv~r~~~~k~~~~~~~~~~y~~~~-y 192 (300)
++..+.+..+.+|++..|+|..+..+.|...++... +...+..|.... ..... ..++.+. |. ... +
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~-~~----~~~~~ 145 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRS---EPFFKPD-WS----PDLLL 145 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEe---ccccCCC-CC----HHHhh
Confidence 345555556789999999999999988888887652 333343332210 00000 0111111 10 001 1
Q ss_pred CCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCCe
Q 022275 193 FRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVE 238 (300)
Q Consensus 193 P~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v~ 238 (300)
..-+.|++-+++++++..+---... ....||.-++.-+...|.+
T Consensus 146 ~~~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 146 SQNYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred hcCCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccce
Confidence 1112355567888887776432221 2346999888777555443
No 52
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=55.57 E-value=1.3e+02 Score=25.67 Aligned_cols=145 Identities=15% Similarity=0.047 Sum_probs=69.4
Q ss_pred CCcEEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHH---hhcCCCCce-eEEe-eec-cccc
Q 022275 97 HKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTL---SRHRSKPRV-YIGC-MKS-GPVL 170 (300)
Q Consensus 97 ~~DIl~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L---~~~~~~~~l-y~G~-~~~-~pv~ 170 (300)
...+..+....+.. ...-.-.+++.+.. .+++|++..|+|+.+..+.|..++ ........+ .+|. +.. ....
T Consensus 46 ~~~i~~i~~~~n~G-~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (237)
T cd02526 46 SEKIELIHLGENLG-IAKALNIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGE 123 (237)
T ss_pred CCcEEEEECCCcee-hHHhhhHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCe
Confidence 34555444433222 22222234555433 278999999999999988888875 222222222 2222 111 0000
Q ss_pred cC---CCCccccCcccccCCCCCCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCC--CeEeCCCCc
Q 022275 171 SQ---KNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE--VEHIDDRNM 245 (300)
Q Consensus 171 r~---~~~k~~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~--v~~~~~~~f 245 (300)
.. ....+.... .........-..++.|+|.++++++++.+---...+ .+..||+.++.-+...| +...+....
T Consensus 124 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v 201 (237)
T cd02526 124 NSPGVRKSGYKLRI-QKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVL 201 (237)
T ss_pred eccceeccCcccee-cccccCCceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEE
Confidence 00 000000000 000000011123456788899999888874322222 23468999988875554 444444333
No 53
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=54.40 E-value=62 Score=30.12 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=56.9
Q ss_pred CCcEEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEeccc--ccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHH
Q 022275 67 EKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIE--GYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 144 (300)
Q Consensus 67 ~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D--~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~ 144 (300)
..++.++|+=|.+ .....|..=.....-++-+++.+ ++..-+.--..+..|+++.+...+++..|-|+|...+
T Consensus 36 ~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~d 110 (346)
T COG4092 36 SDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSD 110 (346)
T ss_pred cccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHH
Confidence 3456666665543 23456666666666777777653 5554454555677888888899999999999999999
Q ss_pred HHHHHH
Q 022275 145 MLATTL 150 (300)
Q Consensus 145 ~L~~~L 150 (300)
+..+.|
T Consensus 111 nF~k~l 116 (346)
T COG4092 111 NFAKML 116 (346)
T ss_pred HHHHHH
Confidence 999988
No 54
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=50.95 E-value=1.5e+02 Score=25.00 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=52.0
Q ss_pred CcEEEEEEeecCCCCChHHHHhHHHHHhhCCcE-EEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHH
Q 022275 68 KGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF-LRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGML 146 (300)
Q Consensus 68 ~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DI-l~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L 146 (300)
..+.++.+-+.+. + ...+.+++..++++.. .......+ .- |. .++....+....+|++.+|+|..+.++.|
T Consensus 29 ~~~eiivvdd~S~--D-~t~~~~~~~~~~~~~~i~~i~~~~n---~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSK--D-GTAEVARKLARKNPALIRVLTLPKN---RG-KG-GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCC--C-chHHHHHHHHHhCCCcEEEEEcccC---CC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 3466776655553 2 2344455555666654 22333222 11 22 23333444446799999999999999999
Q ss_pred HHHHhh-cCCCCceeEEee
Q 022275 147 ATTLSR-HRSKPRVYIGCM 164 (300)
Q Consensus 147 ~~~L~~-~~~~~~ly~G~~ 164 (300)
.+++.. ......+.+|..
T Consensus 101 ~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 101 EKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHHhccCCcEEEEEe
Confidence 888876 334445667763
No 55
>PHA01631 hypothetical protein
Probab=49.55 E-value=55 Score=28.06 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=51.0
Q ss_pred CCcEEEEecccccCCchHHHHHHHHHHHh---cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCC
Q 022275 97 HKDFLRLEHIEGYHELSAKTKIFFSTAVA---KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQK 173 (300)
Q Consensus 97 ~~DIl~~df~D~y~nLt~Ktl~~l~w~~~---~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~ 173 (300)
+.+|+...--...+++.. -.++..+.+ .-+-+.++.+|.|++|+.-. .. .++..++.=|.. -+
T Consensus 39 ~~~Ii~~~t~~e~Rr~RI--Ak~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiP---A~--- 104 (176)
T PHA01631 39 QEKIIWIMTNTEIRWLRI--AKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYW---LY--- 104 (176)
T ss_pred CCceEEecccchhHHHHH--HHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeee---ee---
Confidence 455665543323333322 222334433 24677888999999997532 11 123234433321 11
Q ss_pred CCccccCcccccCCCCCCCCCccccceeeecHHHHHHHHHh
Q 022275 174 NVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISIN 214 (300)
Q Consensus 174 ~~k~~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~ 214 (300)
.| |.+.+-+||.|.-+++.+..+..|...
T Consensus 105 -~k-----------p~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 105 -YD-----------WANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred -ec-----------CCCcEEEEEccccEEeeHHHhHHHHHH
Confidence 01 123456899999999999999888664
No 56
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=48.77 E-value=1.8e+02 Score=25.34 Aligned_cols=158 Identities=11% Similarity=0.072 Sum_probs=77.4
Q ss_pred cEEEEEEeecCCCCChHHHHhHHHHHhhCCc--EEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHH
Q 022275 69 GIIIRFMIGHSATSNSILDKAIDSEDAQHKD--FLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGML 146 (300)
Q Consensus 69 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~D--Il~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L 146 (300)
.+.++++-..+. +. ..+.+++-.++|++ +...... .|.. |. .++.......+.+|++.+|+|..++++.|
T Consensus 40 ~~eiivvDdgS~--D~-t~~i~~~~~~~~~~~~v~~~~~~---~n~G-~~-~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSP--DG-TQDVVKQLQKVYGEDRILLRPRP---GKLG-LG-TAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCC--CC-HHHHHHHHHHhcCCCcEEEEecC---CCCC-HH-HHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 567777765553 22 23334444445553 2222221 2221 11 23444444457899999999999999888
Q ss_pred HHHHhhcC-CCCceeEEeee--ccc-----cccCCCCcc--ccCcccccCCCCCCCCCccccceeeecHHHHHHHHHhCC
Q 022275 147 ATTLSRHR-SKPRVYIGCMK--SGP-----VLSQKNVKY--HEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQP 216 (300)
Q Consensus 147 ~~~L~~~~-~~~~ly~G~~~--~~p-----v~r~~~~k~--~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~~~ 216 (300)
.+++.... ....+..|... .+. ..|.-.++. +... +. . +.. -+...|++.++++++++.+.....
T Consensus 112 ~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~-~~--~-~~~-~~d~~g~~~~~rr~~~~~i~~~~~ 186 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQ-TL--L-WPG-VSDLTGSFRLYKRSALEDLVSSVV 186 (243)
T ss_pred HHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHH-HH--h-CCC-CCcCCCcccceeHHHHHHHHhhcc
Confidence 88776543 23455556531 110 000000000 0000 00 0 111 123567788999999999965322
Q ss_pred ccCCCChhhHHHHHHH--hhCCCeEeC
Q 022275 217 ILHKFANEDVSLGSWF--IGLEVEHID 241 (300)
Q Consensus 217 ~~~~~~~EDV~vG~~l--~~l~v~~~~ 241 (300)
. ..| .+|+-+...+ .+..+..++
T Consensus 187 ~-~~~-~~~~el~~~~~~~g~~i~~vp 211 (243)
T PLN02726 187 S-KGY-VFQMEIIVRASRKGYRIEEVP 211 (243)
T ss_pred C-CCc-EEehHHHHHHHHcCCcEEEeC
Confidence 1 122 2344454444 445555444
No 57
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=47.20 E-value=1.8e+02 Score=24.77 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=44.7
Q ss_pred EEEEEEeecCCCCChHHHHhHHHHHhhCCcEEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHH
Q 022275 70 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 149 (300)
Q Consensus 70 v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DIl~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~ 149 (300)
..++++...+. + ...+.+ .+...+..+.... .+. .-|.- ++....+..+.+|++.+|+|+.+..+.|.+.
T Consensus 29 ~eiivvdd~s~--d-~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD--E-PYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC--h-HHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 45656654442 2 223333 3445566665554 221 12433 2333334458999999999999999998888
Q ss_pred HhhcC
Q 022275 150 LSRHR 154 (300)
Q Consensus 150 L~~~~ 154 (300)
+....
T Consensus 99 ~~~~~ 103 (235)
T cd06434 99 LKPFE 103 (235)
T ss_pred HHhcc
Confidence 87764
No 58
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=45.44 E-value=2.3e+02 Score=26.28 Aligned_cols=87 Identities=10% Similarity=0.044 Sum_probs=54.2
Q ss_pred CCcEEEEEEeecCCCCChHHHHhHHHHH----------hhCCcEEE--Eeccccc------------CCchHHHHHHH-H
Q 022275 67 EKGIIIRFMIGHSATSNSILDKAIDSED----------AQHKDFLR--LEHIEGY------------HELSAKTKIFF-S 121 (300)
Q Consensus 67 ~~~v~~~FvlG~~~~~~~~~~~~l~~E~----------~~~~DIl~--~df~D~y------------~nLt~Ktl~~l-~ 121 (300)
...|.+-|+++.+.. .+...+.|+.+. ..|+.|.. -||.+.- ...-.+.|+-- .
T Consensus 54 ~~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 54 HELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred chheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 356889999998853 233444455333 34666544 3665321 11223333322 2
Q ss_pred HHHh---cCCccEEEEeCCceeecHHHHHHHHhhcC
Q 022275 122 TAVA---KWDADFYVKVDDDVHVNLGMLATTLSRHR 154 (300)
Q Consensus 122 w~~~---~~~~~fvlK~DDD~fVn~~~L~~~L~~~~ 154 (300)
|+.. .|..+||+-.|-|+.-.++.|++.|...+
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 4332 36899999999999999999999987653
No 59
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=42.12 E-value=4.8e+02 Score=28.27 Aligned_cols=120 Identities=15% Similarity=0.037 Sum_probs=65.0
Q ss_pred CchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeee-------ccccccCCCC-ccccCcc
Q 022275 111 ELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK-------SGPVLSQKNV-KYHEPEY 182 (300)
Q Consensus 111 nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~-------~~pv~r~~~~-k~~~~~~ 182 (300)
|...|.- .++.+.+..+.+|++..|.|..+..+-|...+......++ +|.+. ..|..++-.. .....+.
T Consensus 323 n~~gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~--VglVQtp~~f~n~dp~~rnl~~~~~~~~e~ 399 (852)
T PRK11498 323 HEHAKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKK--LAMMQTPHHFFSPDPFERNLGRFRKTPNEG 399 (852)
T ss_pred CCcchHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCC--eEEEEcceeccCCchHHHhhHHHhhcccch
Confidence 3334554 4566666678999999999999998888776643211122 12221 1121110000 0000000
Q ss_pred cccCC----CC--CCCCCccccceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCC
Q 022275 183 WKFGE----EG--NKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEV 237 (300)
Q Consensus 183 ~~~~y----~~--~~yP~Y~~G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v 237 (300)
..+ | ++ ..-..++.|++.++.+++++.+---... .--||..++.-+...|-
T Consensus 400 ~~f-y~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~---titED~dlslRL~~~Gy 456 (852)
T PRK11498 400 TLF-YGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE---TVTEDAHTSLRLHRRGY 456 (852)
T ss_pred hHH-HHHHHhHHHhhcccccccceeeeEHHHHHHhcCCCCC---ccCccHHHHHHHHHcCC
Confidence 000 0 00 0012457799999999999888432221 23699999999876654
No 60
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=42.11 E-value=2e+02 Score=23.75 Aligned_cols=88 Identities=15% Similarity=0.042 Sum_probs=50.5
Q ss_pred HHHHHHh-cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCCccccCc---ccc----cCC---
Q 022275 119 FFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPE---YWK----FGE--- 187 (300)
Q Consensus 119 ~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~~~~~---~~~----~~y--- 187 (300)
+++++.. ..+.+|++.+|.|+.+.++.|..++........+..|..... .+...|.-.- .+. +..
T Consensus 71 g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (183)
T cd06438 71 GFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSK----NPDDSWITRLYAFAFLVFNRLRPLGR 146 (183)
T ss_pred HHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeee----CCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 246899999999999998888888776644445666654311 1111221000 000 000
Q ss_pred CCCCCCCccccceeeecHHHHHH
Q 022275 188 EGNKYFRHATGQIYAISKDLATY 210 (300)
Q Consensus 188 ~~~~yP~Y~~G~gYvlS~~~~~~ 210 (300)
..-.-+.++.|+++++++++++.
T Consensus 147 ~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 147 SNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHcCCCeeecCchhhhHHHHHHh
Confidence 00122345789999999999988
No 61
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=40.75 E-value=2.3e+02 Score=24.07 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=29.6
Q ss_pred HHHHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEe
Q 022275 121 STAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGC 163 (300)
Q Consensus 121 ~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~ 163 (300)
....+..+.+|++.+|+|..+..+.|.+.+......+...+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 4444556789999999999999988877665543333334454
No 62
>PRK10018 putative glycosyl transferase; Provisional
Probab=38.69 E-value=3.1e+02 Score=25.09 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=56.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCCChHHHHhHHHHHhhCCc--EEEEeccc
Q 022275 30 KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKD--FLRLEHIE 107 (300)
Q Consensus 30 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~D--Il~~df~D 107 (300)
.+.+-|+|++--....-.++|..--.+. ...+.++.+-+.+. + .+.+++-.+.++| |..+..
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~Qt---------~~~~EiIVVDDgS~--~---~~~~~~~~~~~~~~ri~~i~~-- 67 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLRQD---------YSNWEMIIVDDCST--S---WEQLQQYVTALNDPRITYIHN-- 67 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHhCC---------CCCeEEEEEECCCC--C---HHHHHHHHHHcCCCCEEEEEC--
Confidence 4567777777543333345555544432 13466766654442 2 1223333344444 322222
Q ss_pred ccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHHHHHHhhc
Q 022275 108 GYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH 153 (300)
Q Consensus 108 ~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~ 153 (300)
-.|.- + -.+...+.+..+.+|++..|+|..+.++.|..++...
T Consensus 68 -~~n~G-~-~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 68 -DINSG-A-CAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred -CCCCC-H-HHHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 22221 1 1123444445688999999999999998888777654
No 63
>PLN03181 glycosyltransferase; Provisional
Probab=37.81 E-value=2.3e+02 Score=28.03 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=50.1
Q ss_pred HHHHHhhccCcchhhhhhcCCcEEEEEEeecCCC----C-Ch-HHHHhH---HHHHhhCC-cEEEEe-ccc-ccCCchHH
Q 022275 48 DSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSAT----S-NS-ILDKAI---DSEDAQHK-DFLRLE-HIE-GYHELSAK 115 (300)
Q Consensus 48 ~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~----~-~~-~~~~~l---~~E~~~~~-DIl~~d-f~D-~y~nLt~K 115 (300)
++-|+.|.+.... ...+..=+++.|.|..+. + ++ .+.+.+ .+-+++|| ++...+ ..+ .+..--.|
T Consensus 109 D~kR~~Wl~~~p~---~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~WaK 185 (453)
T PLN03181 109 DEKRAEWLKLHPS---FAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWAK 185 (453)
T ss_pred HHHHHHHHHhCCC---CCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhhH
Confidence 4556677765421 112333466666665521 1 12 222222 23567777 443333 223 44444556
Q ss_pred HHHHHHHHHhcCCccEEEEeCCceee
Q 022275 116 TKIFFSTAVAKWDADFYVKVDDDVHV 141 (300)
Q Consensus 116 tl~~l~w~~~~~~~~fvlK~DDD~fV 141 (300)
...+-.-+.+.|+++||.-+|.|+++
T Consensus 186 ipalRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 186 LPVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHHHHHHHHCCCceEEEEecCCcee
Confidence 65554455668999999999999887
No 64
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=37.74 E-value=3.4e+02 Score=25.31 Aligned_cols=136 Identities=8% Similarity=0.041 Sum_probs=69.1
Q ss_pred CcEEEEEEeecCCCCChHHHHhHHHHHhhCCc-EEEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHHH
Q 022275 68 KGIIIRFMIGHSATSNSILDKAIDSEDAQHKD-FLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGML 146 (300)
Q Consensus 68 ~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~D-Il~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L 146 (300)
..+.++++-..+. |.+ .+.+++-.+.+++ ++......++. |.- ++.-..+..+.+|++..|+|...+++.+
T Consensus 37 ~~~EIIvVDDgS~--D~T-~~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 37 KEYEILLIDDGSS--DNS-AEMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CCEEEEEEeCCCC--CcH-HHHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 3467888876554 222 2333333344444 44444333332 211 2233333457899999999999999998
Q ss_pred HHHHhhcCCCCceeEEeeec--cccccCCCCccccCcccccCCCCCCCCCccccceeeecHHHHHHHHHh
Q 022275 147 ATTLSRHRSKPRVYIGCMKS--GPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISIN 214 (300)
Q Consensus 147 ~~~L~~~~~~~~ly~G~~~~--~pv~r~~~~k~~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~ 214 (300)
.++++......++..|.... .+..|.-.++.+.--...+ .+..++.+.+| .-++++++++.+...
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~--~g~~~~d~~~g-fr~~~r~~~~~l~~~ 175 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT--TGKAMGDYGCM-LRAYRRHIVDAMLHC 175 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH--cCCCCCCCCcC-eEEEcHHHHHHHHHC
Confidence 88887664333444343221 1222211122111000000 12344544333 348999999998653
No 65
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=35.67 E-value=2.6e+02 Score=23.38 Aligned_cols=103 Identities=16% Similarity=0.059 Sum_probs=56.3
Q ss_pred HHhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeee-----ccccccCCCCccccCcccccCCCCCCCCCccc
Q 022275 123 AVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK-----SGPVLSQKNVKYHEPEYWKFGEEGNKYFRHAT 197 (300)
Q Consensus 123 ~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~-----~~pv~r~~~~k~~~~~~~~~~y~~~~yP~Y~~ 197 (300)
+....+.+|++.+|+|..+..+.|.+.+....... ..+|... .....+....++..... . ...+ .+
T Consensus 67 g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~-~~ 137 (221)
T cd02522 67 GAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRSR------L-FGLP-YG 137 (221)
T ss_pred HHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhcccceec------c-cCCC-cC
Confidence 33445689999999999999887777665543332 3333321 11110000111111110 0 1112 24
Q ss_pred cceeeecHHHHHHHHHhCCccCCCChhhHHHHHHHhhCCC
Q 022275 198 GQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEV 237 (300)
Q Consensus 198 G~gYvlS~~~~~~l~~~~~~~~~~~~EDV~vG~~l~~l~v 237 (300)
+.|.++++++...+-.-... +..||.-++.-+...|-
T Consensus 138 ~~~~~~r~~~~~~~G~fd~~---~~~ED~d~~~r~~~~G~ 174 (221)
T cd02522 138 DQGLFIRRELFEELGGFPEL---PLMEDVELVRRLRRRGR 174 (221)
T ss_pred CceEEEEHHHHHHhCCCCcc---ccccHHHHHHHHHhCCC
Confidence 56889999987776432222 26799988877765554
No 66
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=32.68 E-value=2e+02 Score=21.12 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=29.5
Q ss_pred CcEEEEecccccCCchHHHHHHHHHHHh-cCCccEEEEeCCceeecHHH
Q 022275 98 KDFLRLEHIEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGM 145 (300)
Q Consensus 98 ~DIl~~df~D~y~nLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~ 145 (300)
.++-...+.+.+..-..+ ...++.+.+ ..+++|++.+|-|=|+.++.
T Consensus 41 ~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 41 PGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 445555555566543333 333444443 36899999999999988765
No 67
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=31.59 E-value=3.1e+02 Score=22.98 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=47.5
Q ss_pred hcCCccEEEEeCCceeecHHHHHHHHhh-cCCCCceeEEeee-ccccccC-CCCccccCc--ccccCCCCCCCCCccccc
Q 022275 125 AKWDADFYVKVDDDVHVNLGMLATTLSR-HRSKPRVYIGCMK-SGPVLSQ-KNVKYHEPE--YWKFGEEGNKYFRHATGQ 199 (300)
Q Consensus 125 ~~~~~~fvlK~DDD~fVn~~~L~~~L~~-~~~~~~ly~G~~~-~~pv~r~-~~~k~~~~~--~~~~~y~~~~yP~Y~~G~ 199 (300)
+....+|++.+|+|..+.++.|..++.. ..+...+..|... ....... ...+.+.+. .+........-.+.+.|+
T Consensus 75 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (224)
T cd06442 75 KAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDPTSG 154 (224)
T ss_pred HHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Confidence 3345699999999999999888888876 3444556656532 1111000 000000000 000000001112346788
Q ss_pred eeeecHHHHHHHH
Q 022275 200 IYAISKDLATYIS 212 (300)
Q Consensus 200 gYvlS~~~~~~l~ 212 (300)
+.++++++++.+.
T Consensus 155 ~~~~~r~~~~~ig 167 (224)
T cd06442 155 FRAYRREVLEKLI 167 (224)
T ss_pred cchhhHHHHHHHh
Confidence 8899999999987
No 68
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=31.07 E-value=63 Score=29.27 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=51.0
Q ss_pred CCccEEEEeCCceeecHHHHHHHHhhcCCCCceeEEeeeccccccCCCCccccCcccccCCCCCCCCCccccceeeecHH
Q 022275 127 WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKD 206 (300)
Q Consensus 127 ~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~k~~~~~~~~~~y~~~~yP~Y~~G~gYvlS~~ 206 (300)
...+-|+-+|||+.++.+.|...++.-...+.-.+|.....-......++|--...| ...|- -...++-++.+.
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~-----~~~yS-mvLt~aaf~h~~ 147 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEW-----SNEYS-MVLTGAAFYHRY 147 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SS-----S--BS-EE-TTEEEEETH
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCC-----CCcch-hhhhhhHhhcch
Confidence 478899999999999999998777766554555678753111111123344221111 11221 133455556666
Q ss_pred HHHHHHHhCC-c----c-CCCChhhHHHHHHHh
Q 022275 207 LATYISINQP-I----L-HKFANEDVSLGSWFI 233 (300)
Q Consensus 207 ~~~~l~~~~~-~----~-~~~~~EDV~vG~~l~ 233 (300)
.+........ . + +.+.=||+.+-..++
T Consensus 148 yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs 180 (247)
T PF09258_consen 148 YLELYTHWLPASIREYVDEHFNCEDIAMNFLVS 180 (247)
T ss_dssp HHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence 6543332111 0 1 133569999987774
No 69
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=30.77 E-value=4.2e+02 Score=26.16 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=53.5
Q ss_pred HHHHHhhccCcchhhhhhcCCcEEEEEEeecCCCC------ChHHHHhHH---HHHhhCCcEEEEec---ccccCCchHH
Q 022275 48 DSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATS------NSILDKAID---SEDAQHKDFLRLEH---IEGYHELSAK 115 (300)
Q Consensus 48 ~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~------~~~~~~~l~---~E~~~~~DIl~~df---~D~y~nLt~K 115 (300)
+.-|+.|.+......... ...-+++.|.|..+.+ +..+++.++ .-+++||=-+..+. .+.....-.|
T Consensus 106 d~~R~~wl~~~p~~~~~~-~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~WaK 184 (429)
T PLN03182 106 DEQRRRWLRKNPGFPSFV-NGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWAK 184 (429)
T ss_pred HHHHHHHHHhCCCCCCcc-CCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchhH
Confidence 344666766542110000 1234777787776542 122233332 34677774445453 2233444557
Q ss_pred HHHHHHHHHhcCCccEEEEeCCceee
Q 022275 116 TKIFFSTAVAKWDADFYVKVDDDVHV 141 (300)
Q Consensus 116 tl~~l~w~~~~~~~~fvlK~DDD~fV 141 (300)
.-++.+-+.++|+++||.=+|.|+++
T Consensus 185 lpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 185 LPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHCCCceEEEEecCCcee
Confidence 77776666778999999999999987
No 70
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=27.91 E-value=89 Score=30.40 Aligned_cols=80 Identities=9% Similarity=0.027 Sum_probs=48.6
Q ss_pred cEEEEEEeecCCCCChHHHHhHHHHHhhCCcE---EEEecccccCCchHHHHHHHHHHHhcCCccEEEEeCCceeecHHH
Q 022275 69 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDF---LRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGM 145 (300)
Q Consensus 69 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~DI---l~~df~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~ 145 (300)
...++|.+-.+.+ ..-+.++.=.++|..+ +.+--.+. .+.-|.-.++-= .+.-+++||+..|||+|+.++.
T Consensus 114 ~~ElLfcv~s~eD---pAi~vv~~Ll~kyp~VdAklf~gG~~v--g~npKInN~mpg-y~~a~ydlvlisDsgI~m~pdt 187 (431)
T KOG2547|consen 114 KYELLFCVESSED---PAIEVVERLLKKYPNVDAKLFFGGEKV--GLNPKINNMMPG-YRAAKYDLVLISDSGIFMKPDT 187 (431)
T ss_pred ceEEEEEEccCCC---cHHHHHHHHHhhCCCcceEEEEccccc--ccChhhhccCHH-HHHhcCCEEEEecCCeeecCch
Confidence 4578888876642 2345566667778743 11111222 223454332211 1112567999999999999999
Q ss_pred HHHHHhhcC
Q 022275 146 LATTLSRHR 154 (300)
Q Consensus 146 L~~~L~~~~ 154 (300)
+.+.-.+..
T Consensus 188 ildm~t~M~ 196 (431)
T KOG2547|consen 188 ILDMATTMM 196 (431)
T ss_pred HHHHHHhhh
Confidence 999887664
No 71
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=26.51 E-value=3.8e+02 Score=25.10 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=17.1
Q ss_pred CccEEEEeCCceeecHHHHHHH
Q 022275 128 DADFYVKVDDDVHVNLGMLATT 149 (300)
Q Consensus 128 ~~~fvlK~DDD~fVn~~~L~~~ 149 (300)
.+.|++-..||+.....-+-..
T Consensus 169 ~~~YyL~LEDDVia~~~f~~~i 190 (297)
T PF04666_consen 169 LGDYYLQLEDDVIAAPGFLSRI 190 (297)
T ss_pred cCCeEEEecCCeEechhHHHHH
Confidence 6889999999998887644443
No 72
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=25.80 E-value=2.9e+02 Score=20.68 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=24.4
Q ss_pred HHHHHhcCCccEEEEeCCceeecHHHHHHHHh
Q 022275 120 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLS 151 (300)
Q Consensus 120 l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~ 151 (300)
+..+.+..+.+|++.+|+|..+..+.+...+.
T Consensus 69 ~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~ 100 (156)
T cd00761 69 RNAGLKAARGEYILFLDADDLLLPDWLERLVA 100 (156)
T ss_pred HHHHHHHhcCCEEEEECCCCccCccHHHHHHH
Confidence 34444444899999999999999988877643
No 73
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=22.53 E-value=58 Score=25.74 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=19.0
Q ss_pred HHHHHHHHH--HH----hcCCccEEEEeCCcee
Q 022275 114 AKTKIFFST--AV----AKWDADFYVKVDDDVH 140 (300)
Q Consensus 114 ~Ktl~~l~w--~~----~~~~~~fvlK~DDD~f 140 (300)
.+++..++. +. .|++++|++|.|++=+
T Consensus 48 ~~~iq~l~lPat~~~~~~Cp~ArYv~~l~~qHW 80 (108)
T PF05412_consen 48 YQVIQSLRLPATLDRNGACPHARYVLKLDGQHW 80 (108)
T ss_pred HHHHHHccCceeccCCCCCCCCEEEEEecCceE
Confidence 456665554 22 2789999999998754
No 74
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=22.04 E-value=7.9e+02 Score=24.42 Aligned_cols=86 Identities=9% Similarity=0.176 Sum_probs=43.5
Q ss_pred HHHHHHHHHh----cCCccEEEEeCCceeecHHHHHHHHhhc---CCCCceeEEe-eeccccccCCCCcccc----Cccc
Q 022275 116 TKIFFSTAVA----KWDADFYVKVDDDVHVNLGMLATTLSRH---RSKPRVYIGC-MKSGPVLSQKNVKYHE----PEYW 183 (300)
Q Consensus 116 tl~~l~w~~~----~~~~~fvlK~DDD~fVn~~~L~~~L~~~---~~~~~ly~G~-~~~~pv~r~~~~k~~~----~~~~ 183 (300)
.-.-++|+.. ..+++.++.+.||.-+-++-+--+.... ...+.+++=. .+. .+...++ |...
T Consensus 175 IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNd------nG~~~~~~~~~~~~l 248 (434)
T PF03071_consen 175 IARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWND------NGKEHFVDDSRPSLL 248 (434)
T ss_dssp HHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--T------T-BGGGS-TT-TT-E
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEcccc------CCccccccCCCccce
Confidence 3344566654 2478899999999999887665443332 1244666433 221 1111111 1111
Q ss_pred ccCCCCCCCCCccccceeeecHHHHHHHHHh
Q 022275 184 KFGEEGNKYFRHATGQIYAISKDLATYISIN 214 (300)
Q Consensus 184 ~~~y~~~~yP~Y~~G~gYvlS~~~~~~l~~~ 214 (300)
|..+.+| |-|++|++++-..|...
T Consensus 249 ---yRsdffp----glGWml~r~~w~el~~~ 272 (434)
T PF03071_consen 249 ---YRSDFFP----GLGWMLTRELWDELEPK 272 (434)
T ss_dssp ---EEESS-------SSEEEEHHHHHHHGGG
T ss_pred ---EecccCC----chHHHhhHHHHHhhccc
Confidence 2222344 99999999999876654
No 75
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=21.83 E-value=1.2e+02 Score=26.76 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCccEEEEeCCceeecHHHHHHHH
Q 022275 118 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTL 150 (300)
Q Consensus 118 ~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L 150 (300)
.+++-+.+..+++|++.++||+++.-++++..|
T Consensus 44 ~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~i 76 (217)
T PF13712_consen 44 AAYNEAMEKAKAKYLVFLHQDVFIINENWLEDI 76 (217)
T ss_dssp THHHHHGGG--SSEEEEEETTEE-SSHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHH
Confidence 366777777899999999999999755544443
No 76
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=20.71 E-value=1.3e+02 Score=26.96 Aligned_cols=33 Identities=15% Similarity=-0.015 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHhcCCccEEEEeCCceeecHHH
Q 022275 113 SAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGM 145 (300)
Q Consensus 113 t~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~ 145 (300)
-.|..++-+.+.+.|+++||+-+|.|+++-=+.
T Consensus 61 W~K~~~lr~~m~~~P~~~wv~~lD~Dali~n~~ 93 (239)
T PF05637_consen 61 WAKIPALRAAMKKYPEAEWVWWLDSDALIMNPD 93 (239)
T ss_dssp HTHHHHHHHHHHH-TT-SEEEEE-TTEEE----
T ss_pred hHHHHHHHHHHHhCCCCCEEEEEcCCeEEEecc
Confidence 447777777777789999999999999875433
Done!