BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022276
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 147 bits (370), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 132/253 (52%), Gaps = 20/253 (7%)
Query: 44 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVT---- 99
DH L A+ ++ +K+ ++ Y EE +R V++ N++ + H T
Sbjct: 1 DHSLEAQ--WTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTMAMN 57
Query: 100 KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACG 159
F D+T EFR+ GL R + P+ + P DWR+ G VT VK+QG CG
Sbjct: 58 AFGDMTSEEFRQVMNGLQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCG 115
Query: 160 SCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 219
S W+FSATGALEG F TG L+SLSEQ LVDC PE + GCNGGLM+ AF+Y
Sbjct: 116 SSWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---GPE----GNEGCNGGLMDYAFQY 168
Query: 220 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAGN 279
+ GG++ E+ YPY T+ SCK++ A + F I E + + GP++
Sbjct: 169 VQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPIS-- 225
Query: 280 VASIELPHISFSF 292
+I+ H SF F
Sbjct: 226 -VAIDAGHESFLF 237
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 131/240 (54%), Gaps = 33/240 (13%)
Query: 56 FKSKFSKTYATQEEHDYRFRVFKANLR-----RAKRRQLLDPTAVHGVTKFSDLTPSEFR 110
FK+ ++++Y +E +R ++F+ L K RQ L + GV F+D+TP E +
Sbjct: 25 FKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTL-GVNLFTDMTPEEMK 83
Query: 111 RQFLGLNRRLRLPADAQK--APILPTNDL--------PTDFDWRDHGAVTGVKDQGACGS 160
GL +PAD K PI DL P FDWRD G V+ VK+QG+CGS
Sbjct: 84 AYTHGL----IMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGS 139
Query: 161 CWSFSATGALEGAHFLSTGELV--SLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFE 218
W+FS+TGA+E ++ G S+SEQQLVDC GC+GG MN AF
Sbjct: 140 SWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA---------LGCSGGWMNDAFT 190
Query: 219 YILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLV-KHGPLA 277
Y+ + GG++ E YPY D G+C +D +++AA +S + +S ++ M A++V GP+A
Sbjct: 191 YVAQNGGIDSEGAYPYEMAD-GNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVA 249
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 131/253 (51%), Gaps = 20/253 (7%)
Query: 44 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVT---- 99
DH L A+ ++ +K+ ++ Y EE +R V++ N++ + H T
Sbjct: 5 DHSLEAQ--WTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTMAMN 61
Query: 100 KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACG 159
F D+T EFR+ G R + P+ + P DWR+ G VT VK+QG CG
Sbjct: 62 AFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCG 119
Query: 160 SCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 219
S W+FSATGALEG F TG L+SLSEQ LVDC P+ + GCNGGLM+ AF+Y
Sbjct: 120 SXWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---GPQ----GNEGCNGGLMDYAFQY 172
Query: 220 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAGN 279
+ GG++ E+ YPY T+ SCK++ A + F I E + + GP++
Sbjct: 173 VQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPIS-- 229
Query: 280 VASIELPHISFSF 292
+I+ H SF F
Sbjct: 230 -VAIDAGHESFLF 241
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 129/253 (50%), Gaps = 23/253 (9%)
Query: 50 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLT 105
+HH+ L+K + K Y + E R +++ NL+ L +H G+ D+T
Sbjct: 9 DHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMT 68
Query: 106 PSEFRRQFLGLNRRLRLPADAQKAPIL---PTNDLPTDFDWRDHGAVTGVKDQGACGSCW 162
E + L LR+P+ Q+ P LP DWR+ G VT VK QG+CG+ W
Sbjct: 69 SEEV----MSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAW 124
Query: 163 SFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 222
+FSA GALE L TG+LVSLS Q LVD C E+ G + GCNGG M +AF+YI+
Sbjct: 125 AFSAVGALEAQLKLKTGKLVSLSAQNLVD----CSTEKYG--NKGCNGGFMTTAFQYIID 178
Query: 223 AGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAGNVA 281
G++ + YPY D C++D AA S ++ + ED + + GP++
Sbjct: 179 NKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVS---V 234
Query: 282 SIELPHISFSFLF 294
++ H SF FL+
Sbjct: 235 GVDARHPSF-FLY 246
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 107/196 (54%), Gaps = 13/196 (6%)
Query: 98 VTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGA 157
+ F D+T EFR+ G R + P+ + P DWR+ G VT VK+QG
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQ 59
Query: 158 CGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAF 217
CGSCW+FSATGALEG F TG L+SLSEQ LVDC P+ + GCNGGLM+ AF
Sbjct: 60 CGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---GPQG----NEGCNGGLMDYAF 112
Query: 218 EYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLA 277
+Y+ GG++ E+ YPY T+ SCK++ A + F I E + + GP++
Sbjct: 113 QYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPIS 171
Query: 278 GNVASIELPHISFSFL 293
+I+ H SF F
Sbjct: 172 ---VAIDAGHESFLFY 184
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 93/157 (59%), Gaps = 11/157 (7%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
+ P DWR+ G VT VK+QG CGSCW+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS-- 58
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A +
Sbjct: 59 -GPQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTG 112
Query: 256 FSVISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
F I E + + GP++ +I+ H SF F
Sbjct: 113 FVDIPKQEKALMKAVATVGPIS---VAIDAGHESFLF 146
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 92/155 (59%), Gaps = 11/155 (7%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGSCW+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I E + + GP++ +I+ H SF F
Sbjct: 114 DIPKQEKALMKAVATVGPIS---VAIDAGHESFLF 145
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 92/155 (59%), Gaps = 11/155 (7%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGSCW+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I E + + GP++ +I+ H SF F
Sbjct: 114 DIPKQEKALMKAVATVGPIS---VAIDAGHESFLF 145
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 127 bits (318), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 92/155 (59%), Gaps = 11/155 (7%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGSCW+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDAGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I E + + GP++ +I+ H SF F
Sbjct: 114 DIPKQEKALMKAVATVGPIS---VAIDAGHESFLF 145
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 27/233 (11%)
Query: 56 FKSKFSKTYATQEEHDYRFRVFKANLRRAK----RRQLLDPTAVHGVTKFSDLTPSEFRR 111
+K ++K Y ++ +R +++ N++ + R L T G+ +F+D+T EF+
Sbjct: 8 WKRMYNKEYNGADDQ-HRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKA 66
Query: 112 QFLGLNRRLR------LPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFS 165
++L R +P +A + P DWR+ G VT VKDQG CGS W+FS
Sbjct: 67 KYLTEMSRASDILSHGVPYEANNRAV------PDKIDWRESGYVTEVKDQGNCGSGWAFS 120
Query: 166 ATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGG 225
TG +EG + + +S SEQQLVDC ++GC GGLM +A++Y LK G
Sbjct: 121 TTGTMEGQYMKNERTSISFSEQQLVDCSRPWG-------NNGCGGGLMENAYQY-LKQFG 172
Query: 226 VEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLV-KHGPLA 277
+E E YPYT + G C+++K A V+ F + S + NLV GP A
Sbjct: 173 LETESSYPYTAVE-GQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAA 224
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 92/157 (58%), Gaps = 11/157 (7%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
+ P DWR+ G VT VK+QG CGS W+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCS-- 58
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A +
Sbjct: 59 -GPQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTG 112
Query: 256 FSVISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
F I E + + GP++ +I+ H SF F
Sbjct: 113 FVDIPKQEKALMKAVATVGPIS---VAIDAGHESFLF 146
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 91/155 (58%), Gaps = 11/155 (7%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGS W+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I E + + GP++ +I+ H SF F
Sbjct: 114 DIPKQEKALMKAVATVGPIS---VAIDAGHESFLF 145
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 91/157 (57%), Gaps = 12/157 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR G VT VK+Q CGSCW+FSATGALEG F TG+LVSLSEQ LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR-- 58
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
P+ + GCNGG M AF+Y+ + GG++ E+ YPY D CK+ A + F
Sbjct: 59 -PQG----NQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD-EICKYRPENSVAQDTGF 112
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
+V++ E + + GP++ +++ H SF F
Sbjct: 113 TVVAPGKEKALMKAVATVGPIS---VAMDAGHSSFQF 146
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 91/155 (58%), Gaps = 11/155 (7%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGS W+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I E + + GP++ +I+ H SF F
Sbjct: 114 DIPKQEKALMKAVATVGPIS---VAIDAGHESFLF 145
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 91/155 (58%), Gaps = 11/155 (7%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGS W+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I E + + GP++ +I+ H SF F
Sbjct: 114 DIPKQEKALMKAVATVGPIS---VAIDAGHESFLF 145
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 91/155 (58%), Gaps = 11/155 (7%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGS W+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDAGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I E + + GP++ +I+ H SF F
Sbjct: 114 DIPKQEKALMKAVATVGPIS---VAIDAGHESFLF 145
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 10/142 (7%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
DLP DWR++GAV VK+QG CGSCW+FS A+EG + + TG+L+SLSEQQLVDC
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT-- 59
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
+ + GC GG MN AF++I+ GG+ E+ YPY G D G C + ++ +
Sbjct: 60 -------TANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD-GICNSTVNAPVVSIDS 111
Query: 256 FSVISSDEDQMAANLVKHGPLA 277
+ + S +Q V + P++
Sbjct: 112 YENVPSHNEQSLQKAVANQPVS 133
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 108/209 (51%), Gaps = 21/209 (10%)
Query: 42 SEDHLLNAEHHFSLFKSKF---SKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGV 98
S+D L + E LF S +K Y +E YRF +FK NL + + G+
Sbjct: 8 SQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGL 67
Query: 99 TKFSDLTPSEFRRQFLG--LNRRLRLPADAQ--KAPILPTNDLPTDFDWRDHGAVTGVKD 154
+F+DL+ EF +++G ++ + D + I+ +LP + DWR GAVT V+
Sbjct: 68 NEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDIV---NLPENVDWRKKGAVTPVRH 124
Query: 155 QGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMN 214
QG+CGSCW+FSA +EG + + TG+LV LSEQ+LVDC+ GC GG
Sbjct: 125 QGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR---------SHGCKGGYPP 175
Query: 215 SAFEYILKAGGVEREKDYPYTGTDGGSCK 243
A EY+ K G+ YPY G+C+
Sbjct: 176 YALEYVAK-NGIHLRSKYPYKAKQ-GTCR 202
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 94/155 (60%), Gaps = 11/155 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP+ DWR GAV +K+Q CGSCW+FSA A+E + + TG+L+SLSEQ+LVDCD
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD--- 57
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
+ GCNGG MN+AF+YI+ GG++ +++YPY+ GSCK + ++ +++ F
Sbjct: 58 ------TASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQ-GSCKPYRLRV-VSINGF 109
Query: 257 SVISSDEDQMAANLVKHGPLAGNVASIELPHISFS 291
++ + + + V P++ V + P +S
Sbjct: 110 QRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYS 144
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 87/144 (60%), Gaps = 13/144 (9%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ GAVT VKDQG CGSCW+FS G +EG ++ LVSLSEQ LV CD
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD---- 57
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKA--GGVEREKDYPYTGTDG--GSCKFDKSKIAAAV 253
+ D GC GGLM++AF +I+ + G V E YPY +G C+ + +I AA+
Sbjct: 58 -----TIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAI 112
Query: 254 SNFSVISSDEDQMAANLVKHGPLA 277
++ + DED +AA L ++GPLA
Sbjct: 113 TDHVDLPQDEDAIAAYLAENGPLA 136
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 127/261 (48%), Gaps = 35/261 (13%)
Query: 50 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLL----DPTAVHGVTKFSDLT 105
+ +S FK K+Y++ E R +FK N+ + + T + +F D++
Sbjct: 24 QEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMS 83
Query: 106 PSEFRRQFLGLNR----------RLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQ 155
EF +NR LR+P + K P L DWR + AV+ VKDQ
Sbjct: 84 KEEF---LAYVNRGKAQKPKHPENLRMPYVSSKKP------LAASVDWRSN-AVSEVKDQ 133
Query: 156 GACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNS 215
G CGS WSFS TGA+EG L G L SLSEQ L+DC S ++GC+GG M+S
Sbjct: 134 GQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDC-------SSSYGNAGCDGGWMDS 186
Query: 216 AFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHG 274
AF YI G+ E YPY G C+FD S+ +S + + S DE+ +A + + G
Sbjct: 187 AFSYIHDY-GIMSESAYPYE-AQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAG 244
Query: 275 PLAGNV-ASIELPHISFSFLF 294
P+A + A+ EL S +
Sbjct: 245 PVAVAIDATDELQFYSGGLFY 265
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 120/255 (47%), Gaps = 35/255 (13%)
Query: 52 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPS 107
H+ L+K K Y + + R +++ NL+ L VH + D+T
Sbjct: 10 HWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSE 69
Query: 108 EFRRQFLGL---------NRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGAC 158
E ++ GL N L +P +AP D+R G VT VK+QG C
Sbjct: 70 EVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAP--------DSVDYRKKGYVTPVKNQGQC 121
Query: 159 GSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFE 218
GSCW+FS+ GALEG TG+L++LS Q LVDC E D GC GG M +AF+
Sbjct: 122 GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQ 172
Query: 219 YILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVI-SSDEDQMAANLVKHGPLA 277
Y+ K G++ E YPY G + SC ++ + AA + I +E + + + GP++
Sbjct: 173 YVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVS 231
Query: 278 GNVASIELPHISFSF 292
+I+ SF F
Sbjct: 232 ---VAIDASLTSFQF 243
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 83/144 (57%), Gaps = 13/144 (9%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VKDQG CGSCW+FSA G +E FL+ L +LSEQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKA--GGVEREKDYPYTGTDGGS--CKFDKSKIAAAV 253
DSGC+GGLMN+AFE+I++ G V E YPY +G S C + A +
Sbjct: 60 -------DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 254 SNFSVISSDEDQMAANLVKHGPLA 277
+ + DE Q+AA L +GP+A
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVA 136
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 83/144 (57%), Gaps = 13/144 (9%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VKDQG CGSCW+FSA G +E FL+ L +LSEQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKA--GGVEREKDYPYTGTDGGS--CKFDKSKIAAAV 253
DSGC+GGLMN+AFE+I++ G V E YPY +G S C + A +
Sbjct: 60 -------DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 254 SNFSVISSDEDQMAANLVKHGPLA 277
+ + DE Q+AA L +GP+A
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVA 136
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 90/157 (57%), Gaps = 12/157 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR G VT VK+Q CGS W+FSATGALEG F TG+LVSLSEQ LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR-- 58
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
P+ + GCNGG M AF+Y+ + GG++ E+ YPY D CK+ A + F
Sbjct: 59 -PQG----NQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD-EICKYRPENSVAQDTGF 112
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
+V++ E + + GP++ +++ H SF F
Sbjct: 113 TVVAPGKEKALMKAVATVGPIS---VAMDAGHSSFQF 146
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 12/159 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 60 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 116
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSFLF 294
+ + ED + + GP++ ++ H SF FL+
Sbjct: 117 TELPYGREDVLKEAVANKGPVS---VGVDARHPSF-FLY 151
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 90/155 (58%), Gaps = 11/155 (7%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CG+ ++FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDVGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I E + + GP++ +I+ H SF F
Sbjct: 114 DIPKQEKALMKAVATVGPIS---VAIDAGHESFLF 145
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 83/144 (57%), Gaps = 13/144 (9%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VKDQG CGSCW+FSA G +E FL+ L +L+EQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKA--GGVEREKDYPYTGTDGGS--CKFDKSKIAAAV 253
DSGC+GGLMN+AFE+I++ G V E YPY +G S C + A +
Sbjct: 60 -------DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 254 SNFSVISSDEDQMAANLVKHGPLA 277
+ + DE Q+AA L +GP+A
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVA 136
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 83/144 (57%), Gaps = 13/144 (9%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VKDQG CGSCW+FSA G +E FL+ L +L+EQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKA--GGVEREKDYPYTGTDGGS--CKFDKSKIAAAV 253
DSGC+GGLMN+AFE+I++ G V E YPY +G S C + A +
Sbjct: 60 -------DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 254 SNFSVISSDEDQMAANLVKHGPLA 277
+ + DE Q+AA L +GP+A
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVA 136
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 12/159 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 57
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 58 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 114
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSFLF 294
+ + ED + + GP++ ++ H SF FL+
Sbjct: 115 TELPYGREDVLKEAVANKGPVS---VGVDARHPSF-FLY 149
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 12/159 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSFLF 294
+ + ED + + GP++ ++ H SF FL+
Sbjct: 114 TELPYGREDVLKEAVANKGPVS---VGVDARHPSF-FLY 148
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 12/159 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 57
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 58 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 114
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSFLF 294
+ + ED + + GP++ ++ H SF FL+
Sbjct: 115 TELPYGREDVLKEAVANKGPVS---VGVDARHPSF-FLY 149
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 12/159 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSFLF 294
+ + ED + + GP++ ++ H SF FL+
Sbjct: 114 TELPYGREDVLKEAVANKGPVS---VGVDARHPSF-FLY 148
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 12/159 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LV+LS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSFLF 294
+ + ED + + GP++ ++ H SF FL+
Sbjct: 114 TELPYGREDVLKEAVANKGPVS---VGVDARHPSF-FLY 148
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 12/159 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCRKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSFLF 294
+ + ED + + GP++ ++ H SF FL+
Sbjct: 114 TELPYGREDVLKEAVANKGPVS---VGVDARHPSF-FLY 148
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 77/126 (61%), Gaps = 14/126 (11%)
Query: 134 TNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCD 193
+DLP DWR GAVTGVKDQG CGSCW+FS ++EG + + TG LVSLSEQ+L+DCD
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 194 HECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAV 253
+ + GC GGLM++AFEYI GG+ E YPY G+C +A A
Sbjct: 61 T--------ADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAAR-GTC-----NVARAA 106
Query: 254 SNFSVI 259
N V+
Sbjct: 107 QNSPVV 112
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 76/118 (64%), Gaps = 10/118 (8%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+P DWR GAVT VKDQG CGSCW+FS A+EG + + T +LVSLSEQ+LVDCD +
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD- 60
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVS 254
+ GCNGGLM+ AFE+I + GG+ E +YPY D G+C K A AVS
Sbjct: 61 -------QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYD-GTCDVSKEN-APAVS 109
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 131 ILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLV 190
+LP+ +LP DWR G VT VKDQ CGSCW+FS TGALEGAH TG+LVSLSEQ+L+
Sbjct: 2 VLPS-ELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELM 60
Query: 191 DCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIA 250
DC + C+GG MN AF+Y+L +GG+ E YPY D C+ +
Sbjct: 61 DCSR-------AEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARD-EECRAQSCEKV 112
Query: 251 AAVSNFS-VISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
+ F V E M A L K P++ +IE + F F
Sbjct: 113 VKILGFKDVPRRSEAAMKAALAKS-PVS---IAIEADQMPFQF 151
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 12/159 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
++ G + GCNGG M +AF+YI+ G++ + YPY D C++D + AA +
Sbjct: 57 STKKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSAYRAATCRKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSFLF 294
+ + ED + + GP++ ++ H SF FL+
Sbjct: 114 TELPYGREDVLKEAVANKGPVS---VGVDARHPSF-FLY 148
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 83/143 (58%), Gaps = 12/143 (8%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VKDQGACG CW+F ATGA+EG ++TG L+S+SEQQ+VDCD
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
G D AF +++ GG+ + +YPYTG D G+C +K IAA + ++
Sbjct: 62 XXXGGDAD---------DAFRWVITNGGIASDANYPYTGVD-GTCDLNK-PIAARIDGYT 110
Query: 258 VISSDEDQMAANLVKHGPLAGNV 280
+ + + + K P++ N+
Sbjct: 111 NVPNSSSALLDAVAKQ-PVSVNI 132
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 12/159 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+ W+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSFLF 294
+ + ED + + GP++ ++ H SF FL+
Sbjct: 114 TELPYGREDVLKEAVANKGPVS---VGVDARHPSF-FLY 148
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 12/159 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+ W+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 57
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 58 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 114
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSFLF 294
+ + ED + + GP++ ++ H SF FL+
Sbjct: 115 TELPYGREDVLKEAVANKGPVS---VGVDARHPSF-FLY 149
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 12/159 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+ W+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 58
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 59 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 115
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSFLF 294
+ + ED + + GP++ ++ H SF FL+
Sbjct: 116 TELPYGREDVLKEAVANKGPVS---VGVDARHPSF-FLY 150
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 12/159 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+ W+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-LKCQYDSKYRAATCSKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAGNVASIELPHISFSFLF 294
+ + ED + + GP++ ++ H SF FL+
Sbjct: 114 TELPYGREDVLKEAVANKGPVS---VGVDARHPSF-FLY 148
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 105/218 (48%), Gaps = 19/218 (8%)
Query: 25 NDDDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKS---KFSKTYATQEEHDYRFRVFKANL 81
+DDD M +V S++ L + E LF+S K +K Y +E YRF +FK NL
Sbjct: 39 DDDDKMDFSIVG----YSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNL 94
Query: 82 RRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND--LPT 139
+ + + G+ F+D++ EF+ ++ G + +L D +P
Sbjct: 95 KYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPE 154
Query: 140 DFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPE 199
DWR GAVT VK+QG+CGS W+FSA +E + TG L SEQ+L+DCD
Sbjct: 155 YVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRR---- 210
Query: 200 ESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGT 237
GCNGG SA + + + G+ YPY G
Sbjct: 211 -----SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGV 242
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 85/142 (59%), Gaps = 10/142 (7%)
Query: 138 PTDFDWRDHGA-VTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
P DWR G V+ VK+QG+CGSCW+FS TGALE A ++TG+++SL+EQQLVDC
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
+ + GC GGL + AFEYI G+ E YPY G D CKF K A V +
Sbjct: 62 N-------NHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD-DHCKFQPDKAIAFVKDV 113
Query: 257 SVIS-SDEDQMAANLVKHGPLA 277
+ I+ +DE+ M + + P++
Sbjct: 114 ANITMNDEEAMVEAVALYNPVS 135
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 74/123 (60%), Gaps = 10/123 (8%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
D P +DW G +T VK QG CGS W+FSATGA+E AH ++TG LVSLSEQ+L+DC E
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
+ GC G +FE+++K GG+ E DYPY D G CK ++ + + N
Sbjct: 61 SE---------GCYNGWHYQSFEWVVKHGGIASEADYPYKARD-GKCKANEIQDKVTIDN 110
Query: 256 FSV 258
+ V
Sbjct: 111 YGV 113
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 14/157 (8%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR GAV +KDQG CGSCW+FS A+EG + ++TG+L+SLSEQ+LVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFD-KSKIAAAVSN 255
+ GC+GG M F++I+ GG+ E +YPYT + G C D + + ++
Sbjct: 61 NTR-------GCDGGFMTDGFQFIINNGGINTEANYPYTAEE-GQCNLDLQQEKYVSIDT 112
Query: 256 FSVISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
+ + + + V + P+ S+ L ++F
Sbjct: 113 YENVPYNNEWALQTAVAYQPV-----SVALEAAGYNF 144
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P D+R G VT VK+QG CGSCW+FS+ GALEG TG+L++LS Q LVDC E D
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG M +AF+Y+ + G++ E YPY G D SC ++ + AA +
Sbjct: 62 ---------GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQD-ESCMYNPTGKAAKCRGYR 111
Query: 258 VI-SSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I +E + + + GP++ +I+ SF F
Sbjct: 112 EIPEGNEKALKRAVARVGPVS---VAIDASLTSFQF 144
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 84/141 (59%), Gaps = 11/141 (7%)
Query: 141 FDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEE 200
+DWR H VT VKDQ CGSCW+FS+ G++E + + +L++LSEQ+LVDC +
Sbjct: 22 YDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK----- 76
Query: 201 SGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS 260
+ GCNGGL+N+AFE +++ GG+ + DYPY C D+ + N+ +S
Sbjct: 77 ----NYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNY--LS 130
Query: 261 SDEDQMAANLVKHGPLAGNVA 281
++++ L GP++ +VA
Sbjct: 131 VPDNKLKEALRFLGPISISVA 151
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 66/109 (60%), Gaps = 8/109 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP+ DWR GAV +K QG CG CW+FSA +EG + + TG L+SLSEQ+L+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFD 245
+ GCNGG + F++I+ GG+ E++YPYT D G C D
Sbjct: 61 NTR-------GCNGGYITDGFQFIINNGGINTEENYPYTAQD-GECNVD 101
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 14/157 (8%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR GAV +KDQG CGS W+FS A+EG + ++TG+L+SLSEQ+LVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFD-KSKIAAAVSN 255
+ GC+GG M F++I+ GG+ E +YPYT + G C D + + ++
Sbjct: 61 NTR-------GCDGGFMTDGFQFIINNGGINTEANYPYTAEE-GQCNLDLQQEKYVSIDT 112
Query: 256 FSVISSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
+ + + + V + P+ S+ L ++F
Sbjct: 113 YENVPYNNEWALQTAVAYQPV-----SVALEAAGYNF 144
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 87/156 (55%), Gaps = 14/156 (8%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P D+R+ G VT VK+QG CGSCW+FS+ GALEG TG+L++LS Q LVDC E D
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG M +AF+Y+ K G++ E YPY G + SC ++ + AA +
Sbjct: 62 ---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAAKCRGYR 111
Query: 258 VI-SSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I +E + + + GP++ +I+ SF F
Sbjct: 112 EIPEGNEKALKRAVARVGPVS---VAIDASLTSFQF 144
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P D+R G VT VK+QG CGSCW+FS+ GALEG TG+L++LS Q LVDC E D
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 63
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG M +AF+Y+ K G++ E YPY G + SC ++ + AA +
Sbjct: 64 ---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAAKCRGYR 113
Query: 258 VI-SSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I +E + + + GP++ +I+ SF F
Sbjct: 114 EIPEGNEKALKRAVARVGPVS---VAIDASLTSFQF 146
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 85/140 (60%), Gaps = 10/140 (7%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P ++DWR GAVT VKDQG CGSCW+FS TG +EG FL+ G L+SLSEQ+L+DCD
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
D C GGL ++A+ I GG+E E DY Y G SC+F K + +
Sbjct: 60 -------DKACMGGLPSNAYSAIKNLGGLETEDDYSYQG-HMQSCQFSAEKAKVYIQDSV 111
Query: 258 VISSDEDQMAANLVKHGPLA 277
+S +E ++AA L K GP++
Sbjct: 112 ELSQNEQKLAAWLAKRGPIS 131
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P D+R G VT VK+QG CGSCW+FS+ GALEG TG+L++LS Q LVDC E D
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG M +AF+Y+ K G++ E YPY G + SC ++ + AA +
Sbjct: 61 ---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAAKCRGYR 110
Query: 258 VI-SSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I +E + + + GP++ +I+ SF F
Sbjct: 111 EIPEGNEKALKRAVARVGPVS---VAIDASLTSFQF 143
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P D+R G VT VK+QG CGSCW+FS+ GALEG TG+L++LS Q LVDC E D
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG M +AF+Y+ K G++ E YPY G + SC ++ + AA +
Sbjct: 62 ---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAAKCRGYR 111
Query: 258 VI-SSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I +E + + + GP++ +I+ SF F
Sbjct: 112 EIPEGNEKALKRAVARVGPVS---VAIDASLTSFQF 144
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 63/103 (61%), Gaps = 9/103 (8%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR GAVT VK+QG CGSCW+FS +E + + TG L+SLSEQQLVDC+ +
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDG 239
+ GC GG A++YI+ GG++ E +YPY G
Sbjct: 60 --------NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQG 94
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 64/103 (62%), Gaps = 9/103 (8%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR GAVT VK+QG+CGSCW+FS +E + + TG L+SLSEQ+LVDCD +
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDG 239
+ GC GG A++YI+ GG++ + +YPY G
Sbjct: 60 --------NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQG 94
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 14/152 (9%)
Query: 142 DWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEES 201
D+R G VT VK+QG CGSCW+FS+ GALEG TG+L++LS Q LVDC E D
Sbjct: 4 DYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---- 59
Query: 202 GSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVI-S 260
GC GG M +AF+Y+ K G++ E YPY G + SC ++ + AA + I
Sbjct: 60 -----GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAAKCRGYREIPE 113
Query: 261 SDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
+E + + + GP++ +I+ SF F
Sbjct: 114 GNEKALKRAVARVGPVS---VAIDASLTSFQF 142
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 85/156 (54%), Gaps = 14/156 (8%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P D+R G VT VK+QG CGSCW+FS+ GALEG +TG L++L+ Q LVDC E D
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEND 61
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG M +AF+Y+ + G++ E YPY G D SC ++ + AA +
Sbjct: 62 ---------GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQD-ESCMYNPTGKAAKCRGYR 111
Query: 258 VI-SSDEDQMAANLVKHGPLAGNVASIELPHISFSF 292
I +E + + GP++ +I+ SF F
Sbjct: 112 EIPEGNEAALKRAVAAVGPVS---VAIDASLTSFQF 144
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 11/141 (7%)
Query: 141 FDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEE 200
+DWR H VT VKDQ CGS W+FS+ G++E + + +L++LSEQ+LVDC +
Sbjct: 21 YDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK----- 75
Query: 201 SGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS 260
+ GCNGGL+N+AFE +++ GG+ + DYPY C D+ + N+ +S
Sbjct: 76 ----NYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNY--LS 129
Query: 261 SDEDQMAANLVKHGPLAGNVA 281
++++ L GP++ +VA
Sbjct: 130 VPDNKLKEALRFLGPISISVA 150
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 62/103 (60%), Gaps = 9/103 (8%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR GAV +K+QG CGSCW+FS +E + + TG L+SLSEQQLVDC +
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDG 239
+ GC GG + A++YI+ GG++ E +YPY G
Sbjct: 60 --------NHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQG 94
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 7/103 (6%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP+ DWR GAV +K QG CG W+FSA +EG + +++G L+SLSEQ+L+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDG 239
+ GC+GG + F++I+ GG+ E++YPYT DG
Sbjct: 61 NTR-------GCDGGYITDGFQFIINDGGINTEENYPYTAQDG 96
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 10/140 (7%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ GAVT VK+Q CGSCW+FS +EG + + TG+L+SLSEQ+L+DC+
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC+GG ++ +Y++ GV E++YPY G DK ++ +
Sbjct: 60 -------SHGCDGGYQTTSLQYVVD-NGVHTEREYPYEKKQGRCRAKDKKGPKVYITGYK 111
Query: 258 VISSDEDQMAANLVKHGPLA 277
+ ++++ + + P++
Sbjct: 112 YVPANDEISLIQAIANQPVS 131
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 71/135 (52%), Gaps = 13/135 (9%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP + DWR GAVT V+ QG+CGSCW+FSA +EG + + TG+LV LSEQ+LVDC+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
GC GG A EY+ K G+ YPY G+C+ ++ +
Sbjct: 60 --------SHGCKGGYPPYALEYVAK-NGIHLRSKYPYKAKQ-GTCRAK--QVGGPIVKT 107
Query: 257 SVISSDEDQMAANLV 271
S + + NL+
Sbjct: 108 SGVGRVQPNNEGNLL 122
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 71/135 (52%), Gaps = 13/135 (9%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP + DWR GAVT V+ QG+CGSCW+FSA +EG + + TG+LV LSEQ+LVDC+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
GC GG A EY+ K G+ YPY G+C+ ++ +
Sbjct: 60 --------SHGCKGGYPPYALEYVAK-NGIHLRSKYPYKAKQ-GTCRAK--QVGGPIVKT 107
Query: 257 SVISSDEDQMAANLV 271
S + + NL+
Sbjct: 108 SGVGRVQPNNEGNLL 122
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 19/160 (11%)
Query: 123 PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELV 182
PADA+ I +DWR HG VT VKDQ CGSCW+FS+ G++E + + L
Sbjct: 14 PADAKLDRIA--------YDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALF 65
Query: 183 SLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSC 242
SEQ+LVDC + ++GC GG + +AF+ ++ GG+ + DYPY +C
Sbjct: 66 LFSEQELVDCSVK---------NNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETC 116
Query: 243 KFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAGNVAS 282
+ + ++ +S +D+ L GP++ ++A+
Sbjct: 117 NLKRCNERYTIKSY--VSIPDDKFKEALRYLGPISISIAA 154
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VK+QGACGS W+FS +EG + + TG L+ LSEQ+LVDCD
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG ++ +Y+ GV K YPY DK ++ +
Sbjct: 60 -------SYGCKGGYQTTSLQYVAN-NGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYK 111
Query: 258 VISSDEDQMAANLVKHGPLA 277
+ S+ + + + PL+
Sbjct: 112 RVPSNXETSFLGALANQPLS 131
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR GAVT VK QG C SCW+FS +EG + + TG LV LSEQ+LVDCD +
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQ- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN- 255
GCN G +++ +Y+ + G+ YPY +C+ ++ +N
Sbjct: 60 --------SYGCNRGYQSTSLQYVAQ-NGIHLRAKYPYIAKQ-QTCRANQVGGPKVKTNG 109
Query: 256 FSVISSDEDQMAANLVKHGPLA 277
+ S+ + N + H P++
Sbjct: 110 VGRVQSNNEGSLLNAIAHQPVS 131
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+P DWR GAVT VK+QG+CGSCW+FSA +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTD 238
GCNGG SA + + + G+ YPY G
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQ 92
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+P DWR GAVT VK+QG+CGSCW+FSA +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTD 238
GCNGG SA + + + G+ YPY G
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQ 92
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VK+QG+CGSCW+FSA +EG + TG L SEQ+L+DCD
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTD 238
GCNGG SA + + + G+ YPY G
Sbjct: 60 -------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQ 92
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+P DWR GAVT VK+QG+CGS W+FSA +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTD 238
GCNGG SA + + + G+ YPY G
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQ 92
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+P DWR GAVT VK+QG+CGS W+FSA +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTD 238
GCNGG SA + + + G+ YPY G
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQ 92
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+P DWR GAVT VK+QG+CGS W+FSA +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTD 238
GCNGG SA + + + G+ YPY G
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQ 92
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 11/112 (9%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+PT DWR GAVT V++QG CGSCW+FS+ A+EG + + TG+L+SLSEQ+L+DC+
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSK 248
GC GG A +Y+ + G+ + YPY G C+ ++K
Sbjct: 60 --------SYGCRGGFPLYALQYVANS-GIHLRQYYPYEGVQ-RQCRASQAK 101
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 38/203 (18%)
Query: 53 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAV-----HGVTKFSDLTPS 107
F +K F+K+YAT E+ + A R+ L+ + SDL+
Sbjct: 8 FEEYKKAFNKSYATFEDEE------------AARKNFLESVKYVQSNGGAINHLSDLSLD 55
Query: 108 EFRRQFL-------GLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGS 160
EF+ +FL L + L A+ I + P + D R VT ++ QG CGS
Sbjct: 56 EFKNRFLMSAEAFEHLKTQFDLNAETNACSI--NGNAPAEIDLRQMRTVTPIRMQGGCGS 113
Query: 161 CWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 220
W+FS A E A+ + + L+EQ+LVDC + GC+G + EYI
Sbjct: 114 AWAFSGVAATESAYLAYRDQSLDLAEQELVDC----------ASQHGCHGDTIPRGIEYI 163
Query: 221 LKAGGVEREKDYPYTGTDGGSCK 243
+ GV +E Y Y + SC+
Sbjct: 164 -QHNGVVQESYYRYVARE-QSCR 184
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
++P++ D R VT ++ QG CGSCW+FS A E A+ + LSEQ+LVDC
Sbjct: 10 NVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC--- 66
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
+ GC+G + EYI + G VE E+ YPY + C+ S+ +SN
Sbjct: 67 -------ASQHGCHGDTIPRGIEYIQQNGVVE-ERSYPYVARE-QRCRRPNSQ-HYGISN 116
Query: 256 FSVI 259
+ I
Sbjct: 117 YCQI 120
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 41/233 (17%)
Query: 66 TQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLP-- 123
+QE++ R + N +A TA ++ LT + R+ G +R++ P
Sbjct: 135 SQEKYSNRLYKYDHNFVKAINAIQKSWTAT-TYMEYETLTLGDMIRRSGGHSRKIPRPKP 193
Query: 124 ----ADAQKAPILPTNDLPTDFDWRD-HGA--VTGVKDQGACGSCWSFSATGALEGAHFL 176
A+ Q+ + LPT +DWR+ HG V+ V++Q +CGSC+SF++ G LE +
Sbjct: 194 APLTAEIQQKILF----LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRI 249
Query: 177 STG--ELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAG-----GVERE 229
T + LS Q++V C GC GG F Y++ G+ E
Sbjct: 250 LTNNSQTPILSPQEVVSCSQYAQ---------GCEGG-----FPYLIAGKYAQDFGLVEE 295
Query: 230 KDYPYTGTDGGSCKFDKSKIAAAVSNFSVISS-----DEDQMAANLVKHGPLA 277
+PYTGTD CK + S + + +E M LV HGP+A
Sbjct: 296 ACFPYTGTD-SPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMA 347
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 73/156 (46%), Gaps = 30/156 (19%)
Query: 137 LPTDFDWRD-HGA--VTGVKDQGACGSCWSFSATGALEGAHFLSTG--ELVSLSEQQLVD 191
LPT +DWR+ HG V+ V++Q +CGSC+SF++ G LE + T + LS Q++V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 192 CDHECDPEESGSCDSGCNGGLMNSAFEYILKAG-----GVEREKDYPYTGTDGGSCKFDK 246
C GC GG F Y++ G+ E +PYTGTD CK +
Sbjct: 61 CSQY---------AQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTD-SPCKMKE 105
Query: 247 SKIAAAVSNFSVISS-----DEDQMAANLVKHGPLA 277
S + + +E M LV HGP+A
Sbjct: 106 DCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMA 141
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
+ P + D R VT ++ QG CGSCW+FS A E A+ + + L+EQ+LVDC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC--- 65
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
+ GC+G + EYI + GV +E Y Y + SC+ ++ +SN
Sbjct: 66 -------ASQHGCHGDTIPRGIEYI-QHNGVVQESYYRYVARE-QSCRRPNAQ-RFGISN 115
Query: 256 FSVI 259
+ I
Sbjct: 116 YCQI 119
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
+ P + D R VT ++ QG CGSCW+FS A E A+ + + L+EQ+LVDC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDC--- 65
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
+ GC+G + EYI + GV +E Y Y + SC+ ++ +SN
Sbjct: 66 -------ASQHGCHGDTIPRGIEYI-QHNGVVQESYYRYVARE-QSCRRPNAQ-RFGISN 115
Query: 256 FSVI 259
+ I
Sbjct: 116 YCQI 119
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
+ P + D R VT ++ QG CGS W+FS A E A+ + + L+EQ+LVDC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDC--- 65
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
+ GC+G + EYI + GV +E Y Y + SC+ ++ +SN
Sbjct: 66 -------ASQHGCHGDTIPRGIEYI-QHNGVVQESYYRYVARE-QSCRRPNAQ-RFGISN 115
Query: 256 FSVI 259
+ I
Sbjct: 116 YCQI 119
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 30/156 (19%)
Query: 137 LPTDFDWRDHGA---VTGVKDQGACGSCWSFSATGALEGAHFLSTG--ELVSLSEQQLVD 191
LP +DWR+ V+ V++Q +CGSC+SF++ G LE + T + LS Q++V
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 192 CDHECDPEESGSCDSGCNGGLMNSAFEYILKAG-----GVEREKDYPYTGTDGGSCKFDK 246
C GC+GG F Y++ GV E +PYT TD CK +
Sbjct: 266 CS---------PYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATD-APCKPKE 310
Query: 247 SKIAAAVSNFSVISS-----DEDQMAANLVKHGPLA 277
+ + S + + +E M LVKHGP+A
Sbjct: 311 NCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMA 346
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 14/97 (14%)
Query: 136 DLPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTG--ELVSLSEQQL 189
++P+ FD W ++ ++DQ CGSCW+F A A+ + +G + V LS L
Sbjct: 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 190 VDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGV 226
+ C C+ SC GC GG++ A++Y +K G V
Sbjct: 62 LSC---CE-----SCGLGCEGGILGPAWDYWVKEGIV 90
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 123 PADAQKAPILPTNDLPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLST 178
P Q+ LP FD W + ++DQG+CGSCW+F A A+ + T
Sbjct: 50 PKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHT 109
Query: 179 GELVS--LSEQQLVDCDHECDPEESGS-CDSGCNGGLMNSAFEYILKAGGV 226
VS +S + L+ C GS C GCNGG A+ + + G V
Sbjct: 110 NAHVSVEVSAEDLLTC--------CGSMCGDGCNGGYPAEAWNFWTRKGLV 152
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 136 DLPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVS--LSEQQL 189
+LP FD W + + ++DQG+CGSCW+F A A+ + T V+ +S + L
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 190 VDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAG 224
+ C C + C GCNGG + A+ + + G
Sbjct: 66 LTC---CGIQ----CGDGCNGGYPSGAWNFWTRKG 93
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVS--LSEQQLV 190
LP FD W + + ++DQG+CGSCW+F A A+ + T V+ +S + L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 191 DCDHECDPEESGSCDSGCNGGLMNSAFEYILKAG 224
C C + C GCNGG + A+ + + G
Sbjct: 61 TC---CGIQ----CGDGCNGGYPSGAWNFWTRKG 87
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVS--LSEQQLV 190
LP FD W + ++DQG+CGSCW+F A A+ + T VS +S + L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 191 DCDHECDPEESGS-CDSGCNGGLMNSAFEYILKAG 224
C GS C GCNGG A+ + + G
Sbjct: 62 TC--------CGSMCGDGCNGGYPAEAWNFWTRKG 88
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVS--LSEQQLV 190
LP FD W + ++DQG+CGSCW+F A A+ + T VS +S + L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 191 DCDHECDPEESGS-CDSGCNGGLMNSAFEYILKAG 224
C GS C GCNGG A+ + + G
Sbjct: 63 TC--------CGSMCGDGCNGGYPAEAWNFWTRKG 89
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVS--LSEQQLV 190
LP FD W + ++DQG+CGSCW+F A A+ + T VS +S + L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 191 DCDHECDPEESGS-CDSGCNGGLMNSAFEYILKAG 224
C GS C GCNGG A+ + + G
Sbjct: 61 TC--------CGSMCGDGCNGGYPAEAWNFWTRKG 87
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 31/157 (19%)
Query: 81 LRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTD 140
LR AKR ++GV K ++ +R+F R LP+ A P + PT
Sbjct: 38 LREAKR--------LNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWP--NCPT- 86
Query: 141 FDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGEL--VSLSEQQLVDCDHECDP 198
+ + DQ ACGSCW+ +A A+ F + G + V +S L+ C
Sbjct: 87 --------IPQIADQSACGSCWAVAAASAMSD-RFCTMGGVQDVHISAGDLLAC------ 131
Query: 199 EESGSCDSGCNGGLMNSAFEYILKAGGV-EREKDYPY 234
C GCNGG + A+ Y G V + + YP+
Sbjct: 132 --CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPF 166
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 31/157 (19%)
Query: 81 LRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTD 140
LR AKR ++GV K ++ +R+F R LP+ A P + PT
Sbjct: 39 LREAKR--------LNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWP--NCPT- 87
Query: 141 FDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGEL--VSLSEQQLVDCDHECDP 198
+ + DQ ACGSCW+ +A A+ F + G + V +S L+ C
Sbjct: 88 --------IPQIADQSACGSCWAVAAASAMSD-RFCTMGGVQDVHISAGDLLAC------ 132
Query: 199 EESGSCDSGCNGGLMNSAFEYILKAGGV-EREKDYPY 234
C GCNGG + A+ Y G V + + YP+
Sbjct: 133 --CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPF 167
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 31/157 (19%)
Query: 81 LRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTD 140
LR AKR ++GV K ++ +R+F R LP+ A P + PT
Sbjct: 61 LREAKR--------LNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWP--NCPT- 109
Query: 141 FDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGEL--VSLSEQQLVDCDHECDP 198
+ + DQ ACGSCW+ +A A+ F + G + V +S L+ C
Sbjct: 110 --------IPQIADQSACGSCWAVAAASAMSD-RFCTMGGVQDVHISAGDLLAC------ 154
Query: 199 EESGSCDSGCNGGLMNSAFEYILKAGGV-EREKDYPY 234
C GCNGG + A+ Y G V + + YP+
Sbjct: 155 --CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPF 189
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 37 SDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH 96
S E E H +A FS F++ ++K+YAT+EE R+ +FK NL +
Sbjct: 12 SIWEWKEAHFQDA---FSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSL 68
Query: 97 GVTKFSDLTPSEFRRQFLGLNRRLRLPA 124
+ F DL+ EFRR++LG + L +
Sbjct: 69 KMNHFGDLSRDEFRRKYLGFKKSRNLKS 96
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 136 DLPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVS--LSEQQL 189
+LP FD W + + ++DQG+CGS W+F A A+ + T V+ +S + L
Sbjct: 62 NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 121
Query: 190 VDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAG 224
+ C C + C GCNGG + A+ + + G
Sbjct: 122 LTC---CGIQ----CGDGCNGGYPSGAWNFWTRKG 149
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVS--LSEQQLV 190
LP FD W + ++DQG+CGS W+F A A+ + T VS +S + L+
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 191 DCDHECDPEESGS-CDSGCNGGLMNSAFEYILKAGGV 226
C GS C GCNGG A+ + + G V
Sbjct: 67 TC--------CGSMCGDGCNGGYPAEAWNFWTRKGLV 95
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 33/175 (18%)
Query: 132 LPTNDLPTDFDWRDHGAV---TGVKDQGA---CGSCWSFSATGAL-EGAHFLSTGELVS- 183
L DLP +DWR+ V + ++Q CGSCW+ ++T A+ + + G S
Sbjct: 31 LSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPST 90
Query: 184 -LSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSC 242
LS Q ++DC + +GSC+ G + + + A ++ G+ E Y D
Sbjct: 91 LLSVQNVIDCGN------AGSCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQECD 139
Query: 243 KFDKS------KIAAAVSNFSVIS-------SDEDQMAANLVKHGPLAGNVASIE 284
KF++ K A+ N+++ S ++M A + +GP++ + + E
Sbjct: 140 KFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATE 194
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGAL 170
LP FD W + + ++DQG+CGSCW+F A A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGAL 170
LP FD W + ++DQG+CGSCW+F A A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 33/170 (19%)
Query: 137 LPTDFDWRDHGAV---TGVKDQGA---CGSCWSFSATGAL-EGAHFLSTGELVS--LSEQ 187
LP +DWR+ V + ++Q CGSCW+ ++T A+ + + G S LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 188 QLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKS 247
++DC + +GSC+ G + + + A ++ G+ E Y D KF++
Sbjct: 61 NVIDCGN------AGSCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQECDKFNQC 109
Query: 248 ------KIAAAVSNFSVIS-------SDEDQMAANLVKHGPLAGNVASIE 284
K A+ N+++ S ++M A + +GP++ + + E
Sbjct: 110 GTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATE 159
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGAL 170
LP FD W + + ++DQG+CGSCW+F A A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGAL 170
LP FD W + + ++DQG+CGSCW+F A A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|2B8M|A Chain A, Crystal Structure Of A Rmlc-Like Cupin Family Protein
With A Double- Stranded Beta-Helix Fold (Mj0764) From
Methanocaldococcus Jannaschii At 1.70 A Resolution
Length = 117
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 25 NDDDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYR 73
N + I +V GEQ H N+ H + K + + T QE H+Y+
Sbjct: 23 NTEHVQINHIVLPRGEQXPKHYSNSYVHLIIIKGEXTLTLEDQEPHNYK 71
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 56 FKSKFSKTYATQEEHDYRFRVF---KANLRRAKRR-QLLDPTAVHGVTKFSDLTPSEFRR 111
+KSKF K Y +E+ R R++ KA + R+ + + T G+ +DLTP EF +
Sbjct: 13 YKSKFDKNYEAEEDL-MRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEFAQ 71
Query: 112 Q 112
+
Sbjct: 72 R 72
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 152 VKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGG 211
V+DQG C + W F++ LE + E +S + +C E CD G
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANC---YKGEHKDRCDEG---- 76
Query: 212 LMNSAFEY---ILKAGGVEREKDYPYT 235
+S E+ I G + E +YPY
Sbjct: 77 --SSPMEFLQIIEDYGFLPAESNYPYN 101
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 152 VKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGG 211
V+DQG C + W F++ LE + E +S + +C E CD G
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANC---YKGEHKDRCDEG---- 77
Query: 212 LMNSAFEY---ILKAGGVEREKDYPYTGTDGG 240
+S E+ I G + E +YPY G
Sbjct: 78 --SSPMEFLQIIEDYGFLPAESNYPYNYVKVG 107
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 149 VTGVKDQGACGSCWSFSATGALE 171
+T VK+Q G+CW +S+ LE
Sbjct: 22 ITSVKNQNRAGTCWCYSSYSFLE 44
>pdb|1N8Y|C Chain C, Crystal Structure Of The Extracellular Region Of Rat Her2
Length = 608
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 159 GSCWSFSATGALEGAHFLSTGELVS------------LSEQQLVDCDHECDPEES 201
G CW T + +HFL E V +S+++ + C EC P+ S
Sbjct: 497 GHCWGPGPTQCVNCSHFLRGQECVEECRVWKGLPREYVSDKRCLPCHPECQPQNS 551
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,579,530
Number of Sequences: 62578
Number of extensions: 348122
Number of successful extensions: 856
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 114
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)