Query 022277
Match_columns 300
No_of_seqs 280 out of 3160
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:23:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06753 hypothetical protein; 100.0 3.4E-27 7.3E-32 208.4 26.8 215 59-278 1-216 (373)
2 COG0654 UbiH 2-polyprenyl-6-me 100.0 1E-26 2.2E-31 205.9 24.8 210 58-270 2-218 (387)
3 PRK06617 2-octaprenyl-6-methox 100.0 1.6E-26 3.4E-31 203.9 24.9 213 59-277 2-221 (374)
4 PRK08013 oxidoreductase; Provi 100.0 2.4E-26 5.1E-31 204.5 23.6 217 57-276 2-229 (400)
5 PRK05868 hypothetical protein; 100.0 2E-25 4.3E-30 196.4 27.7 218 59-277 2-225 (372)
6 PRK08850 2-octaprenyl-6-methox 100.0 5E-26 1.1E-30 202.9 24.2 219 57-278 3-231 (405)
7 PRK06475 salicylate hydroxylas 99.9 1.3E-25 2.8E-30 199.9 26.3 218 59-277 3-237 (400)
8 PRK08163 salicylate hydroxylas 99.9 2.7E-25 5.9E-30 197.8 26.9 217 57-275 3-229 (396)
9 PRK07588 hypothetical protein; 99.9 3.2E-25 7E-30 196.9 26.4 217 59-278 1-224 (391)
10 KOG2614 Kynurenine 3-monooxyge 99.9 6E-26 1.3E-30 191.8 19.0 214 58-273 2-222 (420)
11 PRK06847 hypothetical protein; 99.9 7.9E-25 1.7E-29 193.5 26.7 217 57-277 3-225 (375)
12 PRK07045 putative monooxygenas 99.9 7.4E-25 1.6E-29 194.4 26.2 218 57-278 4-230 (388)
13 PRK06183 mhpA 3-(3-hydroxyphen 99.9 5.9E-25 1.3E-29 202.4 26.4 221 56-278 8-239 (538)
14 PRK07364 2-octaprenyl-6-methox 99.9 3.8E-25 8.1E-30 198.1 22.5 213 57-273 17-239 (415)
15 PRK06184 hypothetical protein; 99.9 1.3E-24 2.8E-29 198.7 26.4 216 57-276 2-231 (502)
16 PRK07236 hypothetical protein; 99.9 2E-24 4.4E-29 191.4 26.4 202 56-266 4-212 (386)
17 PRK08773 2-octaprenyl-3-methyl 99.9 2.5E-24 5.4E-29 191.3 25.3 217 56-275 4-229 (392)
18 PRK08244 hypothetical protein; 99.9 2.1E-24 4.5E-29 197.0 25.4 210 58-274 2-218 (493)
19 PRK05714 2-octaprenyl-3-methyl 99.9 9.8E-25 2.1E-29 194.7 22.7 208 58-267 2-220 (405)
20 TIGR03219 salicylate_mono sali 99.9 1.7E-24 3.7E-29 193.6 24.0 212 60-276 2-237 (414)
21 PRK07494 2-octaprenyl-6-methox 99.9 8.6E-25 1.9E-29 194.0 21.8 216 56-277 5-228 (388)
22 TIGR01989 COQ6 Ubiquinone bios 99.9 1.5E-24 3.3E-29 194.9 23.3 214 59-275 1-244 (437)
23 TIGR01984 UbiH 2-polyprenyl-6- 99.9 9.1E-25 2E-29 193.5 21.6 209 60-271 1-219 (382)
24 PRK07538 hypothetical protein; 99.9 7.7E-24 1.7E-28 189.3 26.9 217 59-278 1-237 (413)
25 PRK09126 hypothetical protein; 99.9 2.2E-24 4.9E-29 191.7 23.2 217 57-276 2-228 (392)
26 PTZ00367 squalene epoxidase; P 99.9 6.8E-24 1.5E-28 193.8 26.6 218 57-279 32-284 (567)
27 PRK07333 2-octaprenyl-6-methox 99.9 6.8E-24 1.5E-28 189.3 25.4 212 58-272 1-224 (403)
28 TIGR01988 Ubi-OHases Ubiquinon 99.9 4.2E-24 9.2E-29 189.5 23.8 213 60-275 1-223 (385)
29 PRK07190 hypothetical protein; 99.9 1.1E-23 2.4E-28 190.7 26.8 216 57-274 4-226 (487)
30 PRK06185 hypothetical protein; 99.9 1.7E-23 3.6E-28 187.0 26.2 213 56-272 4-225 (407)
31 PLN02927 antheraxanthin epoxid 99.9 4E-23 8.7E-28 189.9 27.6 222 56-278 79-313 (668)
32 PF01494 FAD_binding_3: FAD bi 99.9 6.5E-24 1.4E-28 186.0 21.2 218 59-277 2-239 (356)
33 PRK05732 2-octaprenyl-6-methox 99.9 1.6E-23 3.5E-28 186.4 22.0 216 57-275 2-229 (395)
34 PRK08849 2-octaprenyl-3-methyl 99.9 6.3E-23 1.4E-27 181.7 25.2 208 58-270 3-222 (384)
35 PRK08294 phenol 2-monooxygenas 99.9 6.4E-23 1.4E-27 190.9 25.2 212 57-269 31-267 (634)
36 PLN02985 squalene monooxygenas 99.9 1.2E-22 2.5E-27 184.7 25.8 218 55-278 40-270 (514)
37 PRK06126 hypothetical protein; 99.9 1.3E-22 2.8E-27 187.4 26.0 218 55-273 4-252 (545)
38 PRK07608 ubiquinone biosynthes 99.9 1.2E-22 2.7E-27 180.3 24.6 213 57-274 4-226 (388)
39 PRK08243 4-hydroxybenzoate 3-m 99.9 1.7E-22 3.6E-27 179.4 25.5 214 58-276 2-226 (392)
40 TIGR02032 GG-red-SF geranylger 99.9 5.3E-22 1.1E-26 169.6 25.2 209 59-278 1-216 (295)
41 PRK06996 hypothetical protein; 99.9 3.4E-22 7.3E-27 177.8 23.5 218 54-277 7-239 (398)
42 PRK08020 ubiF 2-octaprenyl-3-m 99.9 6.9E-22 1.5E-26 175.6 24.6 215 57-277 4-230 (391)
43 PRK08132 FAD-dependent oxidore 99.9 1.5E-21 3.2E-26 180.4 27.5 212 56-271 21-245 (547)
44 TIGR02360 pbenz_hydroxyl 4-hyd 99.9 1.5E-21 3.3E-26 172.9 25.0 213 58-276 2-226 (390)
45 PRK06834 hypothetical protein; 99.9 1.5E-21 3.3E-26 177.0 24.9 204 57-270 2-210 (488)
46 COG0644 FixC Dehydrogenases (f 99.9 7.2E-21 1.6E-25 168.9 23.7 210 57-279 2-220 (396)
47 PLN00093 geranylgeranyl diphos 99.9 1.8E-20 3.9E-25 167.9 25.9 208 54-274 35-262 (450)
48 KOG1298 Squalene monooxygenase 99.9 1.9E-20 4.1E-25 156.4 17.3 224 55-281 42-274 (509)
49 TIGR02023 BchP-ChlP geranylger 99.9 2E-19 4.3E-24 159.5 24.1 202 59-274 1-219 (388)
50 PRK11445 putative oxidoreducta 99.8 4E-19 8.7E-24 155.4 23.0 194 59-267 2-209 (351)
51 TIGR02028 ChlP geranylgeranyl 99.8 2E-18 4.3E-23 153.2 24.9 205 59-275 1-224 (398)
52 PRK10015 oxidoreductase; Provi 99.8 2.3E-18 5E-23 154.0 20.1 165 57-223 4-173 (429)
53 PLN02697 lycopene epsilon cycl 99.8 2.4E-17 5.3E-22 149.4 24.0 200 57-275 107-324 (529)
54 PRK10157 putative oxidoreducta 99.8 7.1E-18 1.5E-22 151.1 19.8 168 57-226 4-176 (428)
55 PLN02463 lycopene beta cyclase 99.8 1E-16 2.2E-21 143.3 23.1 197 57-274 27-244 (447)
56 PF04820 Trp_halogenase: Trypt 99.7 2.7E-16 5.8E-21 141.3 20.5 216 60-280 1-279 (454)
57 PF05834 Lycopene_cycl: Lycope 99.7 1.5E-15 3.2E-20 133.9 22.8 194 60-278 1-206 (374)
58 PRK04176 ribulose-1,5-biphosph 99.7 1.7E-16 3.8E-21 131.9 15.8 138 55-221 22-180 (257)
59 TIGR01790 carotene-cycl lycope 99.7 2.3E-15 5E-20 133.7 22.8 142 60-218 1-145 (388)
60 TIGR00292 thiazole biosynthesi 99.7 5.3E-16 1.2E-20 128.6 16.3 136 56-220 19-176 (254)
61 PF01946 Thi4: Thi4 family; PD 99.7 6.2E-16 1.4E-20 121.1 13.2 132 57-217 16-168 (230)
62 COG2081 Predicted flavoprotein 99.7 2.9E-16 6.2E-21 133.3 12.1 153 57-215 2-168 (408)
63 COG1635 THI4 Ribulose 1,5-bisp 99.7 4.3E-16 9.4E-21 121.3 11.7 135 57-220 29-184 (262)
64 PRK08255 salicylyl-CoA 5-hydro 99.7 9.6E-16 2.1E-20 146.2 16.4 141 60-221 2-148 (765)
65 KOG3855 Monooxygenase involved 99.7 2.9E-15 6.4E-20 126.7 14.9 233 57-293 35-296 (481)
66 PF03486 HI0933_like: HI0933-l 99.6 1.1E-15 2.3E-20 134.8 11.5 141 59-214 1-166 (409)
67 TIGR01789 lycopene_cycl lycope 99.6 4.3E-14 9.4E-19 124.1 20.3 190 60-278 1-200 (370)
68 PF01266 DAO: FAD dependent ox 99.6 1.4E-13 3E-18 120.7 19.2 116 153-272 141-262 (358)
69 TIGR01377 soxA_mon sarcosine o 99.6 2.5E-13 5.5E-18 120.3 20.5 71 154-226 140-213 (380)
70 PRK11259 solA N-methyltryptoph 99.6 4.1E-13 8.9E-18 118.8 19.8 59 155-215 145-205 (376)
71 PLN02172 flavin-containing mon 99.5 9.4E-14 2E-18 125.0 13.6 153 57-215 9-174 (461)
72 COG0579 Predicted dehydrogenas 99.5 1.6E-13 3.5E-18 120.1 14.0 167 57-224 2-222 (429)
73 PF01134 GIDA: Glucose inhibit 99.5 7E-14 1.5E-18 121.0 11.5 142 60-212 1-150 (392)
74 PRK11728 hydroxyglutarate oxid 99.5 8E-13 1.7E-17 117.6 18.3 68 154-223 144-214 (393)
75 PRK12266 glpD glycerol-3-phosp 99.5 1E-12 2.2E-17 120.2 19.0 111 156-272 152-275 (508)
76 TIGR01373 soxB sarcosine oxida 99.5 9.1E-13 2E-17 117.8 18.3 112 155-272 179-294 (407)
77 PRK13369 glycerol-3-phosphate 99.5 2E-12 4.4E-17 118.3 20.9 110 155-270 151-272 (502)
78 PRK05192 tRNA uridine 5-carbox 99.5 2E-13 4.4E-18 124.3 13.0 146 57-215 3-158 (618)
79 COG2072 TrkA Predicted flavopr 99.5 1.2E-12 2.6E-17 117.4 16.9 168 56-256 6-184 (443)
80 PRK12409 D-amino acid dehydrog 99.5 2.6E-12 5.7E-17 115.0 19.0 69 156-225 194-270 (410)
81 PRK05257 malate:quinone oxidor 99.5 1.4E-12 3E-17 118.3 16.7 70 154-223 178-256 (494)
82 PRK01747 mnmC bifunctional tRN 99.5 1.7E-12 3.6E-17 122.7 17.4 60 155-215 404-464 (662)
83 PF13738 Pyr_redox_3: Pyridine 99.5 1.9E-13 4E-18 110.4 8.9 135 62-215 1-139 (203)
84 KOG1399 Flavin-containing mono 99.5 2.1E-12 4.7E-17 114.4 15.5 174 57-255 5-194 (448)
85 PRK00711 D-amino acid dehydrog 99.5 4.5E-12 9.8E-17 113.7 17.2 70 156-226 198-270 (416)
86 PLN02661 Putative thiazole syn 99.4 3E-12 6.5E-17 109.3 14.4 131 56-215 90-245 (357)
87 PRK11101 glpA sn-glycerol-3-ph 99.4 2.7E-12 5.9E-17 118.4 15.0 72 155-226 145-224 (546)
88 KOG2820 FAD-dependent oxidored 99.4 6.7E-12 1.5E-16 104.0 14.9 171 57-227 6-227 (399)
89 TIGR01320 mal_quin_oxido malat 99.4 8.9E-12 1.9E-16 113.0 17.2 70 154-223 173-250 (483)
90 PLN02464 glycerol-3-phosphate 99.4 1E-11 2.2E-16 116.1 17.9 67 155-221 228-304 (627)
91 PTZ00383 malate:quinone oxidor 99.4 6.6E-12 1.4E-16 113.7 16.1 68 154-222 206-282 (497)
92 COG0578 GlpA Glycerol-3-phosph 99.4 1.5E-11 3.2E-16 110.1 16.9 206 57-268 11-282 (532)
93 PRK13339 malate:quinone oxidor 99.4 7.5E-12 1.6E-16 112.9 14.9 70 154-223 179-257 (497)
94 PF12831 FAD_oxidored: FAD dep 99.4 2.5E-13 5.4E-18 121.8 5.2 148 60-222 1-157 (428)
95 COG0492 TrxB Thioredoxin reduc 99.4 1.5E-11 3.3E-16 104.3 15.1 114 57-217 2-118 (305)
96 COG0665 DadA Glycine/D-amino a 99.4 3.4E-11 7.4E-16 106.9 17.8 121 155-278 152-278 (387)
97 TIGR03364 HpnW_proposed FAD de 99.4 3.7E-11 8E-16 105.9 17.3 56 154-215 140-198 (365)
98 TIGR01292 TRX_reduct thioredox 99.4 1.1E-11 2.3E-16 106.2 13.0 111 59-215 1-113 (300)
99 PRK08274 tricarballylate dehyd 99.4 1.9E-11 4.1E-16 111.2 14.5 159 57-215 3-193 (466)
100 TIGR03329 Phn_aa_oxid putative 99.3 8.9E-12 1.9E-16 113.0 12.1 59 154-215 178-238 (460)
101 COG3380 Predicted NAD/FAD-depe 99.3 1.3E-11 2.8E-16 99.4 10.8 138 59-212 2-158 (331)
102 KOG2415 Electron transfer flav 99.3 2.7E-10 5.8E-15 97.1 18.2 162 54-220 72-262 (621)
103 TIGR00275 flavoprotein, HI0933 99.3 2.9E-11 6.4E-16 107.5 13.2 155 62-223 1-180 (400)
104 TIGR00136 gidA glucose-inhibit 99.3 2.9E-11 6.4E-16 110.2 13.0 143 59-215 1-155 (617)
105 KOG2844 Dimethylglycine dehydr 99.3 4.3E-11 9.2E-16 107.3 13.5 88 154-242 182-272 (856)
106 PRK06481 fumarate reductase fl 99.3 3.4E-11 7.4E-16 110.3 13.2 38 57-94 60-97 (506)
107 PRK07573 sdhA succinate dehydr 99.3 6.1E-11 1.3E-15 111.1 14.5 37 57-93 34-70 (640)
108 PF00890 FAD_binding_2: FAD bi 99.3 4.6E-11 9.9E-16 107.3 13.1 155 60-215 1-204 (417)
109 PF00070 Pyr_redox: Pyridine n 99.3 4.2E-11 9.1E-16 81.4 9.9 80 60-198 1-80 (80)
110 PF00743 FMO-like: Flavin-bind 99.3 6.3E-12 1.4E-16 114.8 7.4 139 59-216 2-152 (531)
111 PRK15317 alkyl hydroperoxide r 99.3 7.6E-11 1.7E-15 108.4 14.3 112 56-214 209-322 (517)
112 TIGR03140 AhpF alkyl hydropero 99.2 1.4E-10 3.1E-15 106.5 13.8 112 56-214 210-323 (515)
113 PRK06452 sdhA succinate dehydr 99.2 2E-10 4.4E-15 106.4 14.3 159 57-216 4-200 (566)
114 PRK06854 adenylylsulfate reduc 99.2 1.6E-10 3.6E-15 107.8 13.5 151 57-215 10-196 (608)
115 PRK06175 L-aspartate oxidase; 99.2 2.7E-10 5.8E-15 102.3 14.1 56 160-215 129-190 (433)
116 PRK08401 L-aspartate oxidase; 99.2 2.4E-10 5.3E-15 103.7 13.9 157 59-217 2-178 (466)
117 TIGR01812 sdhA_frdA_Gneg succi 99.2 3.6E-10 7.9E-15 105.2 15.0 157 60-217 1-194 (566)
118 PRK05945 sdhA succinate dehydr 99.2 2.5E-10 5.4E-15 106.2 13.7 159 57-216 2-199 (575)
119 PRK06069 sdhA succinate dehydr 99.2 7.5E-10 1.6E-14 103.1 16.5 159 57-216 4-202 (577)
120 TIGR00551 nadB L-aspartate oxi 99.2 3E-10 6.4E-15 103.8 13.5 158 58-217 2-192 (488)
121 PRK07804 L-aspartate oxidase; 99.2 5.1E-10 1.1E-14 103.3 14.8 37 57-93 15-51 (541)
122 PRK06263 sdhA succinate dehydr 99.2 8.7E-10 1.9E-14 102.0 15.6 56 160-215 135-198 (543)
123 PRK09231 fumarate reductase fl 99.2 9E-10 1.9E-14 102.4 15.7 57 160-216 134-198 (582)
124 TIGR01813 flavo_cyto_c flavocy 99.2 4.5E-10 9.9E-15 101.5 13.2 57 159-215 130-193 (439)
125 KOG2853 Possible oxidoreductas 99.2 1.9E-09 4.1E-14 89.8 15.5 38 58-95 86-127 (509)
126 PRK07121 hypothetical protein; 99.2 1.2E-09 2.5E-14 100.1 15.4 37 57-93 19-55 (492)
127 PLN00128 Succinate dehydrogena 99.2 1.3E-09 2.9E-14 101.9 16.0 37 57-93 49-85 (635)
128 PRK07803 sdhA succinate dehydr 99.2 1.8E-09 4E-14 101.2 16.8 37 57-93 7-43 (626)
129 TIGR03143 AhpF_homolog putativ 99.1 4.7E-10 1E-14 103.9 12.7 111 57-215 3-115 (555)
130 PTZ00139 Succinate dehydrogena 99.1 1.7E-09 3.6E-14 101.2 16.3 158 57-215 28-230 (617)
131 PRK08071 L-aspartate oxidase; 99.1 7.7E-10 1.7E-14 101.4 13.8 156 57-215 2-191 (510)
132 TIGR01176 fum_red_Fp fumarate 99.1 1.6E-09 3.5E-14 100.5 16.0 159 57-216 2-197 (580)
133 PRK12834 putative FAD-binding 99.1 7.4E-10 1.6E-14 102.6 13.6 35 57-91 3-37 (549)
134 PRK09078 sdhA succinate dehydr 99.1 1.2E-09 2.7E-14 101.8 15.1 56 160-215 150-213 (598)
135 PRK07057 sdhA succinate dehydr 99.1 1.6E-09 3.6E-14 100.9 15.7 36 57-92 11-46 (591)
136 COG1233 Phytoene dehydrogenase 99.1 2.4E-10 5.1E-15 104.2 9.9 55 158-212 223-279 (487)
137 PRK08275 putative oxidoreducta 99.1 6.6E-10 1.4E-14 103.0 12.9 158 57-216 8-202 (554)
138 PRK08958 sdhA succinate dehydr 99.1 1.7E-09 3.8E-14 100.6 15.6 58 159-216 143-208 (588)
139 PRK11883 protoporphyrinogen ox 99.1 2.8E-09 6E-14 96.7 16.4 54 160-214 222-275 (451)
140 TIGR02730 carot_isom carotene 99.1 1.4E-09 3E-14 99.7 14.0 62 159-220 229-292 (493)
141 PLN02568 polyamine oxidase 99.1 2.5E-09 5.5E-14 98.2 15.3 54 158-212 241-294 (539)
142 PRK08205 sdhA succinate dehydr 99.1 2.6E-09 5.7E-14 99.5 15.6 58 159-216 140-208 (583)
143 PF13454 NAD_binding_9: FAD-NA 99.1 7.8E-10 1.7E-14 85.2 10.1 41 171-212 114-155 (156)
144 TIGR00562 proto_IX_ox protopor 99.1 2.4E-09 5.3E-14 97.4 15.0 62 58-119 2-82 (462)
145 PRK12416 protoporphyrinogen ox 99.1 2.9E-09 6.3E-14 96.9 15.4 59 160-220 227-285 (463)
146 PLN02815 L-aspartate oxidase 99.1 7.1E-10 1.5E-14 102.9 10.9 36 57-93 28-63 (594)
147 PRK10262 thioredoxin reductase 99.1 2.5E-09 5.4E-14 92.6 13.4 35 56-90 4-38 (321)
148 PRK05335 tRNA (uracil-5-)-meth 99.1 6.5E-10 1.4E-14 97.5 9.5 125 58-214 2-138 (436)
149 COG1232 HemY Protoporphyrinoge 99.1 4E-09 8.6E-14 93.4 14.4 61 60-120 2-79 (444)
150 PRK07395 L-aspartate oxidase; 99.1 1.9E-09 4.2E-14 99.5 13.0 158 56-215 7-198 (553)
151 PRK07843 3-ketosteroid-delta-1 99.1 3.4E-09 7.3E-14 98.3 14.6 38 56-93 5-42 (557)
152 PRK09077 L-aspartate oxidase; 99.1 2.3E-09 5.1E-14 98.9 13.3 36 57-93 7-42 (536)
153 PRK04965 NADH:flavorubredoxin 99.1 4E-09 8.7E-14 93.4 14.4 109 57-223 140-250 (377)
154 TIGR02734 crtI_fam phytoene de 99.1 2.2E-09 4.7E-14 98.7 13.1 62 159-220 219-282 (502)
155 TIGR02485 CobZ_N-term precorri 99.1 2.4E-09 5.2E-14 96.5 13.0 59 160-218 124-187 (432)
156 PRK08626 fumarate reductase fl 99.1 2.3E-09 5E-14 100.8 13.3 37 57-93 4-40 (657)
157 PRK07512 L-aspartate oxidase; 99.1 1.9E-09 4E-14 99.0 12.3 57 159-215 136-198 (513)
158 PF06039 Mqo: Malate:quinone o 99.1 3.7E-09 8.1E-14 92.3 13.3 70 154-223 176-254 (488)
159 TIGR01811 sdhA_Bsu succinate d 99.1 1.5E-09 3.3E-14 101.2 11.8 33 61-93 1-33 (603)
160 PRK09754 phenylpropionate diox 99.1 3E-09 6.5E-14 94.8 13.2 100 57-215 143-242 (396)
161 PRK09754 phenylpropionate diox 99.1 2.6E-09 5.6E-14 95.2 12.7 110 57-215 2-113 (396)
162 KOG2852 Possible oxidoreductas 99.1 5.6E-09 1.2E-13 85.1 13.2 222 57-284 9-279 (380)
163 PRK08641 sdhA succinate dehydr 99.0 4.5E-09 9.8E-14 97.9 14.6 37 57-93 2-38 (589)
164 PLN02268 probable polyamine ox 99.0 4.8E-09 1E-13 94.7 14.1 36 59-94 1-36 (435)
165 PRK12837 3-ketosteroid-delta-1 99.0 3.4E-09 7.4E-14 97.4 13.2 37 57-94 6-42 (513)
166 TIGR02731 phytoene_desat phyto 99.0 7.7E-09 1.7E-13 93.9 15.4 59 60-118 1-75 (453)
167 COG1249 Lpd Pyruvate/2-oxoglut 99.0 4.6E-09 1E-13 93.8 13.3 102 56-216 171-274 (454)
168 PRK07233 hypothetical protein; 99.0 2.4E-09 5.1E-14 96.6 11.4 35 60-94 1-35 (434)
169 PF07992 Pyr_redox_2: Pyridine 99.0 4.9E-10 1.1E-14 90.2 6.2 114 60-215 1-123 (201)
170 PRK06134 putative FAD-binding 99.0 8.4E-09 1.8E-13 96.1 15.2 38 56-93 10-47 (581)
171 PRK05249 soluble pyridine nucl 99.0 6.6E-09 1.4E-13 94.5 13.9 38 56-93 3-40 (461)
172 PTZ00363 rab-GDP dissociation 99.0 1E-07 2.2E-12 85.4 20.7 39 57-95 3-41 (443)
173 PRK12842 putative succinate de 99.0 8.6E-09 1.9E-13 96.0 14.4 39 56-94 7-45 (574)
174 PLN02612 phytoene desaturase 99.0 1.9E-08 4.2E-13 93.3 16.6 64 55-118 90-169 (567)
175 PLN02576 protoporphyrinogen ox 99.0 1.7E-08 3.6E-13 92.8 16.1 38 57-94 11-49 (496)
176 PRK08010 pyridine nucleotide-d 99.0 3.4E-09 7.4E-14 95.8 11.4 36 57-92 2-37 (441)
177 PRK06467 dihydrolipoamide dehy 99.0 3.8E-09 8.3E-14 96.1 11.6 37 57-93 3-39 (471)
178 PRK09897 hypothetical protein; 99.0 6E-09 1.3E-13 95.1 12.6 146 59-213 2-165 (534)
179 PRK05249 soluble pyridine nucl 99.0 1.3E-08 2.8E-13 92.6 14.4 101 57-216 174-274 (461)
180 TIGR02061 aprA adenosine phosp 99.0 1.1E-08 2.4E-13 95.1 13.9 34 60-93 1-38 (614)
181 PRK06416 dihydrolipoamide dehy 99.0 9.2E-09 2E-13 93.6 13.2 35 57-91 3-37 (462)
182 PRK07251 pyridine nucleotide-d 99.0 5.2E-09 1.1E-13 94.5 11.4 36 57-92 2-37 (438)
183 PRK06370 mercuric reductase; V 99.0 9.1E-09 2E-13 93.6 13.0 36 56-91 3-38 (463)
184 PRK12839 hypothetical protein; 99.0 1.3E-08 2.7E-13 94.5 13.9 38 56-93 6-43 (572)
185 KOG2404 Fumarate reductase, fl 99.0 4.9E-09 1.1E-13 86.8 9.8 45 171-215 159-207 (477)
186 PRK12844 3-ketosteroid-delta-1 99.0 2.3E-08 4.9E-13 92.7 15.3 37 57-93 5-41 (557)
187 PRK06115 dihydrolipoamide dehy 99.0 7.3E-09 1.6E-13 94.2 11.8 37 57-93 2-38 (466)
188 COG0445 GidA Flavin-dependent 99.0 1.4E-09 3E-14 96.2 6.7 145 57-215 3-159 (621)
189 TIGR01424 gluta_reduc_2 glutat 99.0 1.1E-08 2.3E-13 92.6 12.7 33 58-90 2-34 (446)
190 PRK05976 dihydrolipoamide dehy 99.0 1.7E-08 3.8E-13 92.0 14.1 34 57-90 3-36 (472)
191 PLN02676 polyamine oxidase 98.9 6.1E-08 1.3E-12 88.4 17.3 56 158-214 223-286 (487)
192 KOG0029 Amine oxidase [Seconda 98.9 3.5E-09 7.5E-14 95.8 8.9 39 56-94 13-51 (501)
193 PRK12779 putative bifunctional 98.9 3.6E-09 7.9E-14 102.8 9.4 37 57-93 305-341 (944)
194 PTZ00306 NADH-dependent fumara 98.9 7E-09 1.5E-13 103.5 11.6 38 57-94 408-445 (1167)
195 TIGR01421 gluta_reduc_1 glutat 98.9 1.4E-08 3.1E-13 91.8 12.7 101 58-216 166-267 (450)
196 PRK06116 glutathione reductase 98.9 1.4E-08 3.1E-13 92.0 12.7 101 58-216 167-267 (450)
197 PRK13800 putative oxidoreducta 98.9 1.7E-08 3.7E-13 98.5 14.0 36 57-92 12-47 (897)
198 PRK14694 putative mercuric red 98.9 1.6E-08 3.4E-13 92.1 13.0 37 55-91 3-39 (468)
199 PRK09564 coenzyme A disulfide 98.9 6.9E-09 1.5E-13 94.0 10.5 111 60-216 2-117 (444)
200 PRK06116 glutathione reductase 98.9 1E-08 2.3E-13 92.9 11.6 34 57-90 3-36 (450)
201 PRK12845 3-ketosteroid-delta-1 98.9 3.4E-08 7.3E-13 91.5 15.0 38 56-94 14-51 (564)
202 COG1231 Monoamine oxidase [Ami 98.9 7.7E-09 1.7E-13 89.9 10.0 39 56-94 5-43 (450)
203 TIGR02374 nitri_red_nirB nitri 98.9 2.2E-08 4.7E-13 96.4 14.1 118 33-214 121-238 (785)
204 PRK14989 nitrite reductase sub 98.9 2.8E-08 6E-13 95.8 14.7 126 34-222 127-255 (847)
205 TIGR01421 gluta_reduc_1 glutat 98.9 1.4E-08 3.1E-13 91.8 12.0 34 58-91 2-35 (450)
206 TIGR00137 gid_trmFO tRNA:m(5)U 98.9 1E-08 2.2E-13 90.5 10.6 35 59-93 1-35 (433)
207 PRK06416 dihydrolipoamide dehy 98.9 1.6E-08 3.5E-13 92.0 12.3 100 58-216 172-274 (462)
208 TIGR01350 lipoamide_DH dihydro 98.9 1.9E-08 4.2E-13 91.5 12.6 101 58-217 170-272 (461)
209 COG2509 Uncharacterized FAD-de 98.9 8.1E-08 1.8E-12 83.4 15.2 75 160-234 174-255 (486)
210 TIGR01372 soxA sarcosine oxida 98.9 2.2E-08 4.8E-13 98.6 13.3 36 58-93 163-198 (985)
211 PRK09853 putative selenate red 98.9 1.1E-08 2.3E-13 98.7 10.6 37 57-93 538-574 (1019)
212 PRK12843 putative FAD-binding 98.9 4.5E-08 9.7E-13 91.3 14.3 37 57-93 15-51 (578)
213 PRK12831 putative oxidoreducta 98.9 6.3E-09 1.4E-13 94.3 8.4 38 56-93 138-175 (464)
214 TIGR01350 lipoamide_DH dihydro 98.9 4.5E-08 9.7E-13 89.1 13.9 34 59-93 2-35 (461)
215 PLN02507 glutathione reductase 98.9 3.2E-08 7E-13 90.6 12.7 100 58-216 203-302 (499)
216 PF13450 NAD_binding_8: NAD(P) 98.9 6E-09 1.3E-13 68.0 5.6 32 63-94 1-32 (68)
217 PRK13512 coenzyme A disulfide 98.9 2.2E-08 4.8E-13 90.4 11.2 112 59-215 2-118 (438)
218 PRK05976 dihydrolipoamide dehy 98.9 3.6E-08 7.7E-13 89.9 12.6 101 58-216 180-283 (472)
219 PRK07845 flavoprotein disulfid 98.9 3.7E-08 8E-13 89.6 12.5 100 58-216 177-276 (466)
220 TIGR01423 trypano_reduc trypan 98.9 3.7E-08 8E-13 89.7 12.5 102 57-216 186-290 (486)
221 COG0029 NadB Aspartate oxidase 98.8 2.7E-08 5.8E-13 87.3 10.9 144 60-216 9-198 (518)
222 PRK07846 mycothione reductase; 98.8 4.3E-08 9.4E-13 88.7 12.7 99 58-216 166-264 (451)
223 PRK13977 myosin-cross-reactive 98.8 5.8E-08 1.2E-12 88.3 13.3 38 57-94 21-62 (576)
224 TIGR01424 gluta_reduc_2 glutat 98.8 4.3E-08 9.4E-13 88.7 12.5 100 58-216 166-265 (446)
225 PRK07251 pyridine nucleotide-d 98.8 4E-08 8.8E-13 88.8 12.3 100 57-216 156-255 (438)
226 PRK12835 3-ketosteroid-delta-1 98.8 6.3E-08 1.4E-12 90.2 13.8 38 57-94 10-47 (584)
227 PLN02507 glutathione reductase 98.8 8.9E-08 1.9E-12 87.7 14.3 34 56-89 23-56 (499)
228 PRK07818 dihydrolipoamide dehy 98.8 5.6E-08 1.2E-12 88.5 12.6 100 58-216 172-275 (466)
229 PRK06327 dihydrolipoamide dehy 98.8 3E-08 6.5E-13 90.4 10.7 33 57-89 3-35 (475)
230 PRK14727 putative mercuric red 98.8 6.4E-08 1.4E-12 88.4 12.8 38 56-93 14-51 (479)
231 TIGR03315 Se_ygfK putative sel 98.8 2E-08 4.4E-13 97.2 9.7 37 57-93 536-572 (1012)
232 PTZ00318 NADH dehydrogenase-li 98.8 3.6E-08 7.7E-13 88.6 10.5 37 57-93 9-45 (424)
233 KOG2311 NAD/FAD-utilizing prot 98.8 8.8E-09 1.9E-13 89.5 6.1 144 56-213 26-185 (679)
234 TIGR03169 Nterm_to_SelD pyridi 98.8 1.9E-08 4.1E-13 88.7 8.5 105 60-215 1-108 (364)
235 PRK13512 coenzyme A disulfide 98.8 8.5E-08 1.8E-12 86.6 12.9 94 58-214 148-241 (438)
236 PRK06115 dihydrolipoamide dehy 98.8 7.5E-08 1.6E-12 87.6 12.5 101 57-216 173-278 (466)
237 PRK06912 acoL dihydrolipoamide 98.8 8.5E-08 1.8E-12 87.1 12.6 99 58-216 170-270 (458)
238 TIGR02053 MerA mercuric reduct 98.8 7.1E-08 1.5E-12 87.8 12.1 100 58-216 166-268 (463)
239 PRK04965 NADH:flavorubredoxin 98.8 7E-08 1.5E-12 85.5 11.8 104 59-215 3-112 (377)
240 PRK13748 putative mercuric red 98.8 1E-07 2.2E-12 89.0 13.1 34 57-90 97-130 (561)
241 PRK06370 mercuric reductase; V 98.8 9.6E-08 2.1E-12 86.9 12.7 100 58-216 171-273 (463)
242 PTZ00058 glutathione reductase 98.8 6.1E-08 1.3E-12 89.5 11.4 35 56-90 46-80 (561)
243 PRK06327 dihydrolipoamide dehy 98.8 1.4E-07 2.9E-12 86.2 13.5 100 58-216 183-286 (475)
244 COG1252 Ndh NADH dehydrogenase 98.8 4.9E-08 1.1E-12 85.4 10.1 125 32-219 122-268 (405)
245 PRK06292 dihydrolipoamide dehy 98.8 1.2E-07 2.6E-12 86.3 13.0 33 57-89 2-34 (460)
246 COG1249 Lpd Pyruvate/2-oxoglut 98.8 4.1E-08 9E-13 87.8 9.7 43 57-101 3-45 (454)
247 PRK14989 nitrite reductase sub 98.8 4.9E-08 1.1E-12 94.2 10.4 109 58-216 3-115 (847)
248 PRK07818 dihydrolipoamide dehy 98.8 9.7E-08 2.1E-12 87.0 11.8 34 57-90 3-36 (466)
249 PTZ00058 glutathione reductase 98.8 1.3E-07 2.9E-12 87.2 12.8 100 58-215 237-337 (561)
250 PLN02546 glutathione reductase 98.7 3E-07 6.5E-12 85.0 15.0 33 57-89 78-110 (558)
251 TIGR02374 nitri_red_nirB nitri 98.7 4.4E-08 9.5E-13 94.3 9.9 107 61-216 1-110 (785)
252 COG1053 SdhA Succinate dehydro 98.7 7.2E-08 1.6E-12 88.6 10.7 39 56-94 4-42 (562)
253 TIGR02053 MerA mercuric reduct 98.7 9.3E-08 2E-12 87.1 11.3 33 59-91 1-33 (463)
254 PRK08010 pyridine nucleotide-d 98.7 1.3E-07 2.9E-12 85.5 12.2 100 57-216 157-256 (441)
255 KOG1336 Monodehydroascorbate/f 98.7 1.7E-07 3.7E-12 81.9 12.2 123 30-215 191-314 (478)
256 TIGR03452 mycothione_red mycot 98.7 1.9E-07 4.1E-12 84.7 13.1 98 58-215 169-266 (452)
257 PRK11749 dihydropyrimidine deh 98.7 2.9E-08 6.2E-13 90.2 7.8 38 56-93 138-175 (457)
258 KOG2960 Protein involved in th 98.7 1.3E-08 2.9E-13 79.4 4.8 38 57-94 75-114 (328)
259 COG2907 Predicted NAD/FAD-bind 98.7 8.8E-08 1.9E-12 80.3 9.8 37 57-94 7-43 (447)
260 KOG0685 Flavin-containing amin 98.7 1.4E-07 3E-12 82.4 11.2 53 158-210 222-282 (498)
261 TIGR03385 CoA_CoA_reduc CoA-di 98.7 2.3E-07 5E-12 83.6 13.2 98 58-215 137-234 (427)
262 PRK12778 putative bifunctional 98.7 3.7E-08 8E-13 94.7 8.4 37 57-93 430-466 (752)
263 COG0446 HcaD Uncharacterized N 98.7 2E-07 4.4E-12 83.4 12.4 118 34-214 118-237 (415)
264 PTZ00052 thioredoxin reductase 98.7 2.3E-07 4.9E-12 85.1 12.4 99 58-216 182-280 (499)
265 PRK12775 putative trifunctiona 98.7 3.8E-08 8.3E-13 96.6 7.7 37 57-93 429-465 (1006)
266 PLN02546 glutathione reductase 98.7 2.4E-07 5.1E-12 85.6 12.4 102 57-216 251-352 (558)
267 TIGR03378 glycerol3P_GlpB glyc 98.7 4.5E-07 9.8E-12 79.9 13.5 61 160-220 264-330 (419)
268 TIGR01316 gltA glutamate synth 98.7 6.5E-08 1.4E-12 87.5 8.2 38 56-93 131-168 (449)
269 PRK06467 dihydrolipoamide dehy 98.7 2.6E-07 5.7E-12 84.2 12.1 99 58-216 174-276 (471)
270 PF13434 K_oxygenase: L-lysine 98.7 1.5E-07 3.3E-12 81.7 9.9 149 58-220 2-165 (341)
271 PLN02852 ferredoxin-NADP+ redu 98.7 7E-08 1.5E-12 87.3 8.0 37 57-93 25-63 (491)
272 PRK14694 putative mercuric red 98.7 3.2E-07 7E-12 83.6 12.4 98 58-216 178-275 (468)
273 COG1252 Ndh NADH dehydrogenase 98.7 1.2E-07 2.6E-12 83.0 9.0 106 57-215 2-112 (405)
274 TIGR01438 TGR thioredoxin and 98.7 2.9E-07 6.3E-12 84.0 12.0 99 58-216 180-281 (484)
275 PTZ00052 thioredoxin reductase 98.7 9.7E-08 2.1E-12 87.5 8.8 33 58-90 5-37 (499)
276 PRK14727 putative mercuric red 98.6 3.6E-07 7.9E-12 83.4 12.2 98 58-216 188-285 (479)
277 PRK12770 putative glutamate sy 98.6 1.3E-07 2.9E-12 82.9 8.9 37 57-93 17-53 (352)
278 TIGR01423 trypano_reduc trypan 98.6 1.5E-07 3.3E-12 85.7 9.5 34 57-90 2-36 (486)
279 PRK12769 putative oxidoreducta 98.6 8.6E-08 1.9E-12 90.8 8.1 37 57-93 326-362 (654)
280 PTZ00318 NADH dehydrogenase-li 98.6 2.7E-07 5.9E-12 83.0 10.9 93 59-214 174-280 (424)
281 PRK09564 coenzyme A disulfide 98.6 7.3E-07 1.6E-11 80.8 13.8 98 58-214 149-246 (444)
282 PRK07845 flavoprotein disulfid 98.6 3.9E-07 8.5E-12 82.9 11.8 33 59-91 2-34 (466)
283 PRK13748 putative mercuric red 98.6 5.5E-07 1.2E-11 84.1 12.4 98 58-216 270-367 (561)
284 TIGR03140 AhpF alkyl hydropero 98.6 5.6E-07 1.2E-11 82.9 12.2 94 58-214 352-450 (515)
285 PRK06912 acoL dihydrolipoamide 98.6 2.5E-07 5.5E-12 84.1 9.7 32 60-91 2-33 (458)
286 COG3634 AhpF Alkyl hydroperoxi 98.6 1.5E-07 3.2E-12 79.0 7.1 149 56-256 209-363 (520)
287 COG3573 Predicted oxidoreducta 98.6 9.2E-07 2E-11 74.0 11.6 43 57-99 4-46 (552)
288 PRK10262 thioredoxin reductase 98.6 8.6E-07 1.9E-11 76.8 12.1 99 57-215 145-249 (321)
289 TIGR03197 MnmC_Cterm tRNA U-34 98.6 3.1E-06 6.8E-11 75.1 15.9 61 154-215 130-191 (381)
290 TIGR01318 gltD_gamma_fam gluta 98.6 1.9E-07 4.2E-12 84.8 8.3 37 57-93 140-176 (467)
291 PTZ00188 adrenodoxin reductase 98.6 4.5E-07 9.8E-12 81.1 10.3 38 57-94 38-76 (506)
292 PTZ00153 lipoamide dehydrogena 98.6 4.9E-07 1.1E-11 84.8 11.0 33 58-90 116-148 (659)
293 KOG1335 Dihydrolipoamide dehyd 98.6 4E-07 8.6E-12 77.4 9.1 101 57-215 210-315 (506)
294 PRK12810 gltD glutamate syntha 98.5 1.5E-07 3.4E-12 85.6 7.0 37 57-93 142-178 (471)
295 PRK06292 dihydrolipoamide dehy 98.5 1.2E-06 2.5E-11 79.8 12.6 101 57-216 168-270 (460)
296 PTZ00153 lipoamide dehydrogena 98.5 1E-06 2.2E-11 82.7 12.2 102 58-216 312-429 (659)
297 COG4529 Uncharacterized protei 98.5 4.1E-07 9E-12 80.0 8.6 145 59-218 2-168 (474)
298 TIGR01438 TGR thioredoxin and 98.5 1E-06 2.2E-11 80.5 11.1 33 58-90 2-34 (484)
299 PRK07208 hypothetical protein; 98.5 1.9E-07 4.1E-12 85.5 6.4 39 56-94 2-40 (479)
300 KOG0042 Glycerol-3-phosphate d 98.5 7.1E-07 1.5E-11 79.0 9.4 55 56-110 65-120 (680)
301 PRK12814 putative NADPH-depend 98.5 2.3E-07 4.9E-12 87.7 6.8 37 57-93 192-228 (652)
302 COG1251 NirB NAD(P)H-nitrite r 98.5 6.5E-07 1.4E-11 82.2 8.6 126 26-215 119-244 (793)
303 COG3349 Uncharacterized conser 98.5 2.1E-07 4.5E-12 82.6 5.2 37 59-95 1-37 (485)
304 TIGR03452 mycothione_red mycot 98.5 2.5E-06 5.4E-11 77.4 12.1 32 58-91 2-33 (452)
305 KOG2665 Predicted FAD-dependen 98.5 9.1E-07 2E-11 73.4 8.3 165 57-223 47-267 (453)
306 PRK07846 mycothione reductase; 98.5 1.3E-06 2.9E-11 79.1 10.3 32 58-91 1-32 (451)
307 PRK12809 putative oxidoreducta 98.4 5.4E-07 1.2E-11 85.1 7.9 37 57-93 309-345 (639)
308 TIGR01317 GOGAT_sm_gam glutama 98.4 6.9E-07 1.5E-11 81.6 7.9 37 57-93 142-178 (485)
309 TIGR02733 desat_CrtD C-3',4' d 98.4 3.4E-07 7.3E-12 84.1 5.8 36 59-94 2-37 (492)
310 PRK15317 alkyl hydroperoxide r 98.4 3.5E-06 7.7E-11 77.7 12.0 94 58-214 351-449 (517)
311 TIGR01292 TRX_reduct thioredox 98.4 4.9E-06 1.1E-10 71.1 11.9 94 58-215 141-239 (300)
312 KOG1335 Dihydrolipoamide dehyd 98.4 3.2E-06 6.9E-11 72.0 9.9 42 57-100 38-79 (506)
313 PRK12771 putative glutamate sy 98.4 1.1E-06 2.3E-11 82.0 7.8 37 57-93 136-172 (564)
314 TIGR01316 gltA glutamate synth 98.4 6.6E-06 1.4E-10 74.6 12.3 35 58-92 272-306 (449)
315 TIGR02732 zeta_caro_desat caro 98.3 1.2E-06 2.6E-11 79.8 6.8 60 60-119 1-76 (474)
316 PRK13984 putative oxidoreducta 98.3 1.2E-06 2.6E-11 82.4 6.7 38 56-93 281-318 (604)
317 TIGR03169 Nterm_to_SelD pyridi 98.3 7E-06 1.5E-10 72.4 11.2 93 58-214 145-243 (364)
318 TIGR00031 UDP-GALP_mutase UDP- 98.3 1.1E-06 2.3E-11 77.1 5.8 36 59-94 2-37 (377)
319 PRK11749 dihydropyrimidine deh 98.3 9.1E-06 2E-10 73.9 11.7 35 57-91 272-307 (457)
320 PLN02487 zeta-carotene desatur 98.3 1.9E-06 4.1E-11 79.6 7.1 63 58-120 75-153 (569)
321 KOG4716 Thioredoxin reductase 98.3 9.3E-06 2E-10 68.2 10.1 46 56-102 17-62 (503)
322 COG1148 HdrA Heterodisulfide r 98.2 1.4E-06 3E-11 76.3 5.0 38 57-94 123-160 (622)
323 PF13434 K_oxygenase: L-lysine 98.2 7.7E-06 1.7E-10 71.1 9.1 134 56-212 188-339 (341)
324 COG0493 GltD NADPH-dependent g 98.2 1.5E-06 3.2E-11 78.0 4.5 36 58-93 123-158 (457)
325 PRK12770 putative glutamate sy 98.2 1.6E-05 3.5E-10 69.7 11.0 34 58-91 172-206 (352)
326 KOG0404 Thioredoxin reductase 98.2 1.4E-05 3.1E-10 63.2 9.3 114 57-214 7-124 (322)
327 PRK12831 putative oxidoreducta 98.2 3E-05 6.4E-10 70.6 12.4 35 57-91 280-314 (464)
328 COG0562 Glf UDP-galactopyranos 98.1 3.6E-06 7.8E-11 70.2 5.2 37 58-94 1-37 (374)
329 KOG3851 Sulfide:quinone oxidor 98.1 1.2E-06 2.7E-11 72.7 2.4 109 56-216 37-147 (446)
330 KOG4254 Phytoene desaturase [C 98.1 1.3E-05 2.9E-10 69.7 8.6 61 160-220 265-327 (561)
331 KOG0399 Glutamate synthase [Am 98.1 4E-06 8.6E-11 80.1 5.5 37 57-93 1784-1820(2142)
332 PF00732 GMC_oxred_N: GMC oxid 98.1 2.5E-06 5.5E-11 72.9 4.0 34 59-92 1-35 (296)
333 TIGR03377 glycerol3P_GlpA glyc 98.1 0.00011 2.5E-09 67.9 15.0 73 154-226 123-203 (516)
334 PLN02529 lysine-specific histo 98.1 5.4E-06 1.2E-10 78.5 6.3 38 57-94 159-196 (738)
335 PRK06567 putative bifunctional 98.1 4.4E-06 9.6E-11 80.3 5.0 36 56-91 381-416 (1028)
336 PLN02328 lysine-specific histo 98.1 6.2E-06 1.3E-10 78.6 5.7 38 57-94 237-274 (808)
337 TIGR03143 AhpF_homolog putativ 98.0 5.6E-05 1.2E-09 70.4 11.9 36 57-92 142-177 (555)
338 PRK12810 gltD glutamate syntha 98.0 8.5E-05 1.8E-09 67.8 12.4 106 57-214 280-400 (471)
339 COG3075 GlpB Anaerobic glycero 98.0 9E-06 1.9E-10 68.1 4.8 43 171-213 272-316 (421)
340 PF08491 SE: Squalene epoxidas 98.0 7.6E-05 1.6E-09 61.8 9.9 77 203-281 2-78 (276)
341 TIGR03862 flavo_PP4765 unchara 98.0 7E-05 1.5E-09 65.7 10.2 74 157-233 84-172 (376)
342 TIGR02352 thiamin_ThiO glycine 98.0 0.00034 7.4E-09 60.8 14.6 62 154-216 132-195 (337)
343 PRK05329 anaerobic glycerol-3- 98.0 1.1E-05 2.3E-10 72.0 5.1 34 58-91 2-35 (422)
344 PRK12778 putative bifunctional 97.9 0.00011 2.3E-09 71.1 12.0 34 58-91 570-604 (752)
345 PRK02106 choline dehydrogenase 97.9 1.1E-05 2.4E-10 75.2 5.1 35 57-91 4-39 (560)
346 PF01593 Amino_oxidase: Flavin 97.9 2.6E-05 5.7E-10 70.0 6.5 46 171-217 223-268 (450)
347 TIGR02462 pyranose_ox pyranose 97.9 1.7E-05 3.7E-10 72.7 5.0 36 59-94 1-36 (544)
348 PLN03000 amine oxidase 97.9 3.3E-05 7E-10 74.0 6.9 38 57-94 183-220 (881)
349 KOG1276 Protoporphyrinogen oxi 97.8 2.6E-05 5.6E-10 67.6 4.7 65 57-121 10-95 (491)
350 KOG1346 Programmed cell death 97.8 7.7E-05 1.7E-09 64.5 7.5 121 36-223 331-460 (659)
351 TIGR01372 soxA sarcosine oxida 97.8 0.00025 5.5E-09 70.4 12.1 98 58-222 317-421 (985)
352 KOG1336 Monodehydroascorbate/f 97.8 0.00018 3.9E-09 63.4 9.6 105 58-213 74-180 (478)
353 TIGR01318 gltD_gamma_fam gluta 97.8 0.00038 8.3E-09 63.5 12.0 35 58-92 282-317 (467)
354 PRK12769 putative oxidoreducta 97.8 0.00042 9.1E-09 66.0 12.4 35 58-92 468-503 (654)
355 PLN02172 flavin-containing mon 97.7 8.5E-05 1.8E-09 67.4 7.4 35 57-91 203-237 (461)
356 COG3486 IucD Lysine/ornithine 97.7 0.00023 4.9E-09 61.6 9.4 150 56-220 3-163 (436)
357 PF00996 GDI: GDP dissociation 97.7 0.00022 4.8E-09 63.6 9.4 38 57-94 3-40 (438)
358 KOG1238 Glucose dehydrogenase/ 97.7 0.00023 4.9E-09 65.2 9.3 38 56-93 55-93 (623)
359 PRK12814 putative NADPH-depend 97.7 0.0005 1.1E-08 65.3 11.9 35 57-91 322-357 (652)
360 PRK05329 anaerobic glycerol-3- 97.7 0.00029 6.3E-09 63.0 9.3 94 58-214 216-318 (422)
361 COG2303 BetA Choline dehydroge 97.7 4.7E-05 1E-09 70.5 4.4 36 56-91 5-40 (542)
362 PRK12779 putative bifunctional 97.7 0.00054 1.2E-08 67.5 11.8 34 58-91 447-480 (944)
363 PLN02976 amine oxidase 97.7 8.1E-05 1.8E-09 74.2 6.0 38 57-94 692-729 (1713)
364 PRK13984 putative oxidoreducta 97.6 0.00061 1.3E-08 64.3 11.5 31 58-88 418-454 (604)
365 PLN02785 Protein HOTHEAD 97.6 7.2E-05 1.6E-09 69.8 5.1 36 56-92 53-88 (587)
366 KOG2495 NADH-dehydrogenase (ub 97.6 0.00021 4.5E-09 62.2 7.1 101 59-220 219-336 (491)
367 TIGR01810 betA choline dehydro 97.6 5.8E-05 1.3E-09 70.0 4.0 46 170-215 207-257 (532)
368 PRK09853 putative selenate red 97.6 0.00083 1.8E-08 65.8 11.8 35 57-91 667-703 (1019)
369 KOG0405 Pyridine nucleotide-di 97.6 0.0025 5.5E-08 54.2 12.8 38 56-93 18-55 (478)
370 COG1206 Gid NAD(FAD)-utilizing 97.5 8.7E-05 1.9E-09 62.3 3.9 37 57-93 2-38 (439)
371 KOG0405 Pyridine nucleotide-di 97.5 0.00029 6.3E-09 59.7 6.3 101 56-214 187-287 (478)
372 PRK01438 murD UDP-N-acetylmura 97.5 0.00059 1.3E-08 62.6 8.7 34 58-91 16-49 (480)
373 KOG2755 Oxidoreductase [Genera 97.4 9.6E-05 2.1E-09 60.1 2.8 33 61-93 2-36 (334)
374 PF06100 Strep_67kDa_ant: Stre 97.4 0.0022 4.8E-08 57.4 11.4 36 59-94 3-42 (500)
375 PRK12775 putative trifunctiona 97.3 0.0025 5.3E-08 63.4 12.0 35 57-91 570-605 (1006)
376 COG0492 TrxB Thioredoxin reduc 97.3 0.0031 6.7E-08 53.9 11.0 94 57-215 142-239 (305)
377 PRK05675 sdhA succinate dehydr 97.3 0.0035 7.5E-08 58.7 12.2 58 159-216 126-191 (570)
378 TIGR03315 Se_ygfK putative sel 97.3 0.003 6.4E-08 62.2 11.4 35 57-91 665-701 (1012)
379 KOG1800 Ferredoxin/adrenodoxin 97.3 0.00061 1.3E-08 58.4 5.8 37 57-93 19-57 (468)
380 COG0446 HcaD Uncharacterized N 97.2 0.0017 3.6E-08 58.1 8.8 42 171-216 67-108 (415)
381 PRK12809 putative oxidoreducta 97.2 0.003 6.5E-08 60.0 10.2 35 58-92 451-486 (639)
382 COG1251 NirB NAD(P)H-nitrite r 97.2 0.0033 7.2E-08 58.6 9.9 112 57-217 2-116 (793)
383 COG3634 AhpF Alkyl hydroperoxi 97.1 0.0024 5.2E-08 54.3 7.7 78 57-197 353-430 (520)
384 TIGR01317 GOGAT_sm_gam glutama 97.1 0.0088 1.9E-07 54.9 12.2 37 57-93 282-319 (485)
385 PF00743 FMO-like: Flavin-bind 97.1 0.0013 2.9E-08 60.7 6.8 36 57-92 182-217 (531)
386 PRK12771 putative glutamate sy 97.1 0.0081 1.8E-07 56.3 11.7 36 57-92 266-302 (564)
387 PF02737 3HCDH_N: 3-hydroxyacy 96.9 0.0012 2.6E-08 52.0 4.1 33 60-92 1-33 (180)
388 KOG2495 NADH-dehydrogenase (ub 96.8 0.0093 2E-07 52.2 9.3 39 55-93 52-90 (491)
389 PF01210 NAD_Gly3P_dh_N: NAD-d 96.8 0.0015 3.3E-08 50.2 4.1 32 60-91 1-32 (157)
390 KOG4716 Thioredoxin reductase 96.8 0.0036 7.9E-08 53.1 6.5 102 57-217 197-303 (503)
391 PF03721 UDPG_MGDP_dh_N: UDP-g 96.7 0.0018 4E-08 51.2 3.7 33 60-92 2-34 (185)
392 COG0569 TrkA K+ transport syst 96.6 0.0031 6.7E-08 51.6 4.5 58 59-116 1-65 (225)
393 KOG1439 RAB proteins geranylge 96.6 0.34 7.4E-06 42.4 16.6 39 57-95 3-41 (440)
394 PF02558 ApbA: Ketopantoate re 96.6 0.0041 8.8E-08 47.4 4.7 31 61-91 1-31 (151)
395 PRK06249 2-dehydropantoate 2-r 96.5 0.0049 1.1E-07 53.2 5.2 35 57-91 4-38 (313)
396 COG3486 IucD Lysine/ornithine 96.4 0.018 3.9E-07 50.2 8.3 51 170-220 291-346 (436)
397 PRK07819 3-hydroxybutyryl-CoA 96.4 0.0044 9.6E-08 52.7 4.7 35 59-93 6-40 (286)
398 PRK06129 3-hydroxyacyl-CoA deh 96.4 0.004 8.7E-08 53.6 4.4 34 59-92 3-36 (308)
399 KOG0404 Thioredoxin reductase 96.4 0.023 4.9E-07 45.6 7.9 37 57-93 156-192 (322)
400 KOG3923 D-aspartate oxidase [A 96.4 0.0043 9.3E-08 51.7 4.0 37 57-93 2-45 (342)
401 PRK02705 murD UDP-N-acetylmura 96.4 0.0043 9.4E-08 56.6 4.6 34 60-93 2-35 (459)
402 PRK07066 3-hydroxybutyryl-CoA 96.4 0.0058 1.3E-07 52.6 4.9 35 58-92 7-41 (321)
403 COG1004 Ugd Predicted UDP-gluc 96.2 0.0062 1.3E-07 52.9 4.3 34 59-92 1-34 (414)
404 PF00899 ThiF: ThiF family; I 96.2 0.0073 1.6E-07 45.1 4.1 34 58-91 2-36 (135)
405 PRK07530 3-hydroxybutyryl-CoA 96.2 0.0079 1.7E-07 51.4 4.8 35 58-92 4-38 (292)
406 PRK05708 2-dehydropantoate 2-r 96.2 0.0085 1.9E-07 51.5 5.0 33 59-91 3-35 (305)
407 PRK08293 3-hydroxybutyryl-CoA 96.2 0.0082 1.8E-07 51.1 4.8 34 59-92 4-37 (287)
408 PRK09260 3-hydroxybutyryl-CoA 96.1 0.0073 1.6E-07 51.5 4.4 34 59-92 2-35 (288)
409 PLN02852 ferredoxin-NADP+ redu 96.1 0.1 2.2E-06 47.8 11.6 24 57-80 165-188 (491)
410 TIGR02354 thiF_fam2 thiamine b 96.1 0.011 2.4E-07 47.4 4.8 35 57-91 20-55 (200)
411 PF01262 AlaDh_PNT_C: Alanine 96.0 0.013 2.7E-07 45.7 4.8 36 57-92 19-54 (168)
412 PRK14106 murD UDP-N-acetylmura 96.0 0.011 2.5E-07 53.7 5.2 35 57-91 4-38 (450)
413 PRK06719 precorrin-2 dehydroge 96.0 0.014 3E-07 44.9 4.8 32 57-88 12-43 (157)
414 PF13738 Pyr_redox_3: Pyridine 95.9 0.0099 2.1E-07 47.6 4.2 35 57-91 166-200 (203)
415 PRK06035 3-hydroxyacyl-CoA deh 95.9 0.011 2.4E-07 50.4 4.7 34 59-92 4-37 (291)
416 TIGR01470 cysG_Nterm siroheme 95.9 0.015 3.3E-07 46.7 5.1 35 57-91 8-42 (205)
417 PRK15116 sulfur acceptor prote 95.9 0.014 3E-07 48.9 5.0 36 57-92 29-65 (268)
418 TIGR03385 CoA_CoA_reduc CoA-di 95.9 0.065 1.4E-06 48.4 9.7 44 171-215 58-104 (427)
419 PRK05808 3-hydroxybutyryl-CoA 95.9 0.012 2.7E-07 49.9 4.7 35 59-93 4-38 (282)
420 cd00401 AdoHcyase S-adenosyl-L 95.8 0.024 5.3E-07 50.5 6.3 36 57-92 201-236 (413)
421 PF13241 NAD_binding_7: Putati 95.8 0.0084 1.8E-07 42.5 2.9 35 57-91 6-40 (103)
422 PRK12921 2-dehydropantoate 2-r 95.8 0.014 3E-07 50.1 4.7 30 60-89 2-31 (305)
423 PF01488 Shikimate_DH: Shikima 95.8 0.024 5.1E-07 42.4 5.3 35 57-91 11-46 (135)
424 PRK06522 2-dehydropantoate 2-r 95.8 0.014 3E-07 50.1 4.6 32 60-91 2-33 (304)
425 PRK06718 precorrin-2 dehydroge 95.8 0.018 3.9E-07 46.2 5.0 34 57-90 9-42 (202)
426 PRK11064 wecC UDP-N-acetyl-D-m 95.8 0.013 2.8E-07 52.6 4.5 34 59-92 4-37 (415)
427 PRK06567 putative bifunctional 95.8 0.12 2.6E-06 50.8 11.1 35 58-92 550-587 (1028)
428 PF02254 TrkA_N: TrkA-N domain 95.7 0.017 3.7E-07 41.7 4.2 32 61-92 1-32 (116)
429 PRK08229 2-dehydropantoate 2-r 95.7 0.017 3.6E-07 50.5 4.9 33 59-91 3-35 (341)
430 TIGR00518 alaDH alanine dehydr 95.6 0.019 4.1E-07 50.7 4.8 35 57-91 166-200 (370)
431 PRK04148 hypothetical protein; 95.5 0.015 3.2E-07 43.0 3.3 34 58-92 17-50 (134)
432 PLN02545 3-hydroxybutyryl-CoA 95.5 0.021 4.6E-07 48.8 4.7 34 59-92 5-38 (295)
433 TIGR01763 MalateDH_bact malate 95.5 0.026 5.6E-07 48.5 5.1 34 59-92 2-36 (305)
434 PRK09424 pntA NAD(P) transhydr 95.4 0.021 4.6E-07 52.2 4.6 36 57-92 164-199 (509)
435 PRK06130 3-hydroxybutyryl-CoA 95.4 0.026 5.6E-07 48.7 4.9 34 59-92 5-38 (311)
436 KOG1346 Programmed cell death 95.4 0.035 7.6E-07 48.6 5.5 137 57-220 177-317 (659)
437 PRK12475 thiamine/molybdopteri 95.4 0.027 5.8E-07 49.1 4.9 35 57-91 23-58 (338)
438 cd01080 NAD_bind_m-THF_DH_Cycl 95.3 0.035 7.5E-07 43.1 4.8 36 56-91 42-78 (168)
439 PRK07688 thiamine/molybdopteri 95.3 0.031 6.6E-07 48.7 5.0 35 57-91 23-58 (339)
440 cd05292 LDH_2 A subgroup of L- 95.3 0.028 6.1E-07 48.3 4.8 33 60-92 2-36 (308)
441 TIGR03026 NDP-sugDHase nucleot 95.3 0.022 4.7E-07 51.2 4.2 33 60-92 2-34 (411)
442 TIGR02356 adenyl_thiF thiazole 95.3 0.034 7.4E-07 44.7 4.9 35 57-91 20-55 (202)
443 PRK08644 thiamine biosynthesis 95.3 0.034 7.4E-07 45.0 4.9 35 57-91 27-62 (212)
444 TIGR02355 moeB molybdopterin s 95.3 0.033 7.1E-07 46.0 4.9 35 57-91 23-58 (240)
445 PRK08268 3-hydroxy-acyl-CoA de 95.2 0.027 5.9E-07 51.9 4.7 36 57-92 6-41 (507)
446 cd01487 E1_ThiF_like E1_ThiF_l 95.2 0.037 8.1E-07 43.3 4.9 32 60-91 1-33 (174)
447 cd01483 E1_enzyme_family Super 95.2 0.038 8.1E-07 41.7 4.7 32 60-91 1-33 (143)
448 PRK14618 NAD(P)H-dependent gly 95.1 0.037 8E-07 48.1 5.1 34 59-92 5-38 (328)
449 PF13478 XdhC_C: XdhC Rossmann 95.1 0.026 5.7E-07 42.1 3.6 33 61-93 1-33 (136)
450 COG0686 Ald Alanine dehydrogen 95.1 0.022 4.9E-07 47.8 3.4 35 57-91 167-201 (371)
451 PRK08328 hypothetical protein; 95.1 0.038 8.2E-07 45.4 4.8 35 57-91 26-61 (231)
452 PRK05690 molybdopterin biosynt 95.1 0.038 8.3E-07 45.8 4.8 35 57-91 31-66 (245)
453 PRK14620 NAD(P)H-dependent gly 95.0 0.035 7.6E-07 48.2 4.7 32 60-91 2-33 (326)
454 PRK00066 ldh L-lactate dehydro 95.0 0.047 1E-06 47.1 5.3 37 56-92 4-42 (315)
455 TIGR00936 ahcY adenosylhomocys 95.0 0.063 1.4E-06 47.7 6.2 36 57-92 194-229 (406)
456 cd00757 ThiF_MoeB_HesA_family 95.0 0.042 9.1E-07 45.1 4.8 35 57-91 20-55 (228)
457 PRK00094 gpsA NAD(P)H-dependen 94.9 0.037 8E-07 48.0 4.5 32 60-91 3-34 (325)
458 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.9 0.034 7.3E-07 51.2 4.4 36 58-93 5-40 (503)
459 PRK07531 bifunctional 3-hydrox 94.9 0.04 8.7E-07 50.7 4.8 34 59-92 5-38 (495)
460 PF00056 Ldh_1_N: lactate/mala 94.9 0.059 1.3E-06 40.6 4.9 33 60-92 2-37 (141)
461 cd01485 E1-1_like Ubiquitin ac 94.8 0.051 1.1E-06 43.5 4.7 35 57-91 18-53 (198)
462 PRK14619 NAD(P)H-dependent gly 94.8 0.054 1.2E-06 46.7 5.1 35 58-92 4-38 (308)
463 cd01492 Aos1_SUMO Ubiquitin ac 94.8 0.055 1.2E-06 43.3 4.8 35 57-91 20-55 (197)
464 cd05311 NAD_bind_2_malic_enz N 94.8 0.053 1.2E-06 44.4 4.8 35 57-91 24-61 (226)
465 PRK12549 shikimate 5-dehydroge 94.8 0.088 1.9E-06 44.7 6.3 35 57-91 126-161 (284)
466 PRK08223 hypothetical protein; 94.7 0.057 1.2E-06 45.5 4.9 35 57-91 26-61 (287)
467 PF00670 AdoHcyase_NAD: S-aden 94.7 0.09 2E-06 40.2 5.5 35 57-91 22-56 (162)
468 PRK07417 arogenate dehydrogena 94.7 0.039 8.5E-07 46.8 4.0 33 60-92 2-34 (279)
469 cd00755 YgdL_like Family of ac 94.7 0.058 1.3E-06 44.2 4.8 35 57-91 10-45 (231)
470 PLN02353 probable UDP-glucose 94.7 0.045 9.8E-07 49.9 4.5 34 59-92 2-37 (473)
471 COG1748 LYS9 Saccharopine dehy 94.6 0.054 1.2E-06 47.7 4.7 33 59-91 2-35 (389)
472 PRK06223 malate dehydrogenase; 94.6 0.06 1.3E-06 46.3 5.0 34 59-92 3-37 (307)
473 PRK05476 S-adenosyl-L-homocyst 94.6 0.11 2.3E-06 46.6 6.6 36 57-92 211-246 (425)
474 cd01484 E1-2_like Ubiquitin ac 94.6 0.061 1.3E-06 44.2 4.8 32 60-91 1-33 (234)
475 TIGR03736 PRTRC_ThiF PRTRC sys 94.6 0.059 1.3E-06 44.4 4.6 35 57-91 10-55 (244)
476 COG1063 Tdh Threonine dehydrog 94.6 0.046 1E-06 48.0 4.3 33 60-92 171-204 (350)
477 PRK15057 UDP-glucose 6-dehydro 94.6 0.05 1.1E-06 48.3 4.5 32 60-92 2-33 (388)
478 PTZ00082 L-lactate dehydrogena 94.6 0.074 1.6E-06 46.0 5.4 36 58-93 6-42 (321)
479 PF03446 NAD_binding_2: NAD bi 94.5 0.067 1.4E-06 41.4 4.6 34 59-92 2-35 (163)
480 PRK11730 fadB multifunctional 94.5 0.043 9.4E-07 52.8 4.2 35 59-93 314-348 (715)
481 PRK08306 dipicolinate synthase 94.5 0.062 1.3E-06 45.9 4.7 36 57-92 151-186 (296)
482 TIGR00561 pntA NAD(P) transhyd 94.5 0.057 1.2E-06 49.4 4.6 36 57-92 163-198 (511)
483 cd01075 NAD_bind_Leu_Phe_Val_D 94.4 0.13 2.8E-06 41.2 6.2 35 57-91 27-61 (200)
484 PLN02494 adenosylhomocysteinas 94.4 0.11 2.3E-06 47.0 6.0 36 57-92 253-288 (477)
485 COG1893 ApbA Ketopantoate redu 94.4 0.056 1.2E-06 46.4 4.2 33 60-92 2-34 (307)
486 TIGR02964 xanthine_xdhC xanthi 94.4 0.075 1.6E-06 44.1 4.8 36 57-92 99-134 (246)
487 COG5044 MRS6 RAB proteins gera 94.3 0.085 1.8E-06 45.6 5.1 39 57-95 5-43 (434)
488 TIGR02437 FadB fatty oxidation 94.3 0.066 1.4E-06 51.5 5.0 36 58-93 313-348 (714)
489 cd05293 LDH_1 A subgroup of L- 94.3 0.083 1.8E-06 45.5 5.1 35 58-92 3-39 (312)
490 cd01488 Uba3_RUB Ubiquitin act 94.3 0.075 1.6E-06 45.0 4.7 32 60-91 1-33 (291)
491 cd01065 NAD_bind_Shikimate_DH 94.3 0.15 3.3E-06 38.8 6.1 36 57-92 18-54 (155)
492 KOG4405 GDP dissociation inhib 94.3 0.07 1.5E-06 46.6 4.4 48 56-103 6-53 (547)
493 KOG2304 3-hydroxyacyl-CoA dehy 94.3 0.055 1.2E-06 43.4 3.5 37 57-93 10-46 (298)
494 cd01489 Uba2_SUMO Ubiquitin ac 94.2 0.072 1.6E-06 45.7 4.5 32 60-91 1-33 (312)
495 cd01339 LDH-like_MDH L-lactate 94.1 0.069 1.5E-06 45.8 4.3 32 61-92 1-33 (300)
496 cd05291 HicDH_like L-2-hydroxy 94.1 0.079 1.7E-06 45.6 4.7 33 60-92 2-36 (306)
497 PRK12548 shikimate 5-dehydroge 94.1 0.17 3.7E-06 43.1 6.6 35 57-91 125-160 (289)
498 TIGR02441 fa_ox_alpha_mit fatt 94.1 0.069 1.5E-06 51.6 4.6 35 59-93 336-370 (737)
499 PRK07502 cyclohexadienyl dehyd 94.1 0.074 1.6E-06 45.8 4.4 35 58-92 6-42 (307)
500 PRK09496 trkA potassium transp 94.0 0.073 1.6E-06 48.5 4.5 33 60-92 2-34 (453)
No 1
>PRK06753 hypothetical protein; Provisional
Probab=99.96 E-value=3.4e-27 Score=208.40 Aligned_cols=215 Identities=23% Similarity=0.371 Sum_probs=173.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 138 (300)
.+|+|||||++|+++|+.|++.|++|+|+||++.+...+.++.+.+++.+.|+.+|+.+.+.........+.+++.+|..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~ 80 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTL 80 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCE
Confidence 37999999999999999999999999999999988878899999999999999999999888777777888888877766
Q ss_pred EEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhh
Q 022277 139 LRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAK 218 (300)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~ 218 (300)
+...++. .......++|..|.+.|.+.+++.+|+++++|++++.++++ +.|++++|+++.+|+||+|||.+|.+|+
T Consensus 81 ~~~~~~~---~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~~~vigadG~~S~vR~ 156 (373)
T PRK06753 81 LNKVKLK---SNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDK-VTIHFADGESEAFDLCIGADGIHSKVRQ 156 (373)
T ss_pred Eeecccc---cCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCc-EEEEECCCCEEecCEEEECCCcchHHHH
Confidence 5544432 12345678999999999999877889999999999987766 4588899989999999999999999999
Q ss_pred hcCCC-CCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277 219 WIGFS-EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP 278 (300)
Q Consensus 219 ~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 278 (300)
.++.. .+.+.++.++++.+..... +.......+++.+++++++|.++++.+|++.+..+
T Consensus 157 ~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~ 216 (373)
T PRK06753 157 SVNADSKVRYQGYTCFRGLIDDIDL-KLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAK 216 (373)
T ss_pred HhCCCCCceEcceEEEEEEeccccc-cCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccc
Confidence 99543 4566778788776543321 22223344556667778999999988887766543
No 2
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.96 E-value=1e-26 Score=205.87 Aligned_cols=210 Identities=26% Similarity=0.387 Sum_probs=163.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~-~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
.+||+|||||++||++|+.|++.|++|+|+|+. ......+++..+.+++++.|+++|+.+.+................+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 579999999999999999999999999999998 4555677999999999999999999877777666555555555444
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEc-CCcEEEcCEEEEcCCC
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELV-NGTRIYANIVIGCDGI 212 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~-~g~~~~ad~vV~A~G~ 212 (300)
.....++..........+.+.+..+.+.|.+.+ ++++++++++|+.++.+++.+. ++++ +|+++.||+||+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcCCCcEEecCEEEECCCC
Confidence 444444444444466788899999999999888 3589999999999999988855 8888 9999999999999999
Q ss_pred ChHhhhhcCCC-CCc-cccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEE
Q 022277 213 RSPIAKWIGFS-EPK-YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVY 270 (300)
Q Consensus 213 ~s~~r~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 270 (300)
+|.+|+.+++. ... .+.+..+. +......+.......++...+.+.++|++++...
T Consensus 161 ~S~vR~~~~~~~~~~~~y~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 218 (387)
T COG0654 161 NSAVRRAAGIAEFSGRDYGQTALV--ANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSS 218 (387)
T ss_pred chHHHHhcCCCCccCCCCCceEEE--EEeecCCCCCCeEEEEecCCCceEEEecCCCcee
Confidence 99999999833 222 23444444 3443335666666666666666669999975444
No 3
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=1.6e-26 Score=203.92 Aligned_cols=213 Identities=16% Similarity=0.156 Sum_probs=159.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc----CCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL----RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~----~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 134 (300)
+||+|||||++|+++|+.|++.|++|+|+|+.+.. ...+++..+.+++.++|+.+|+++.+.....+...+.+++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 69999999999999999999999999999997432 23478999999999999999999988776667777777776
Q ss_pred CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (300)
.+.....++.. ......+.+.|..|.+.|.+.+ ++++++++++++++..++++ +.|.+.++ +++||+||+|||
T Consensus 82 ~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~~-~~~adlvIgADG 157 (374)
T PRK06617 82 KASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-SIIKFDDK-QIKCNLLIICDG 157 (374)
T ss_pred CCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-EEEEEcCC-EEeeCEEEEeCC
Confidence 66654444332 2233467899999999998876 35789999999999888777 44888776 899999999999
Q ss_pred CChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277 212 IRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277 (300)
Q Consensus 212 ~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 277 (300)
.+|.+|+.++........+.++...++. ..++......++...+.++++|++++....++|..+
T Consensus 158 ~~S~vR~~l~~~~~~~~y~~~~~~~v~~--~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~ 221 (374)
T PRK06617 158 ANSKVRSHYFANEIEKPYQTALTFNIKH--EKPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTS 221 (374)
T ss_pred CCchhHHhcCCCcccccCCeEEEEEEec--cCCCCCEEEEEecCCCCEEEeECCCCCeEEEEEeCC
Confidence 9999999997654333335566554443 334443323334444557789999886444444443
No 4
>PRK08013 oxidoreductase; Provisional
Probab=99.95 E-value=2.4e-26 Score=204.53 Aligned_cols=217 Identities=21% Similarity=0.236 Sum_probs=153.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEchhHHHHHHHcCCcHHHHhc-cccccce
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGM 129 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~ 129 (300)
..+||+||||||+|+++|+.|++.|++|+|+|+.+.+.. .-++..+.++++++|+++|+++.+... ..+...+
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~ 81 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGM 81 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEE
Confidence 358999999999999999999999999999999986532 125567899999999999999998764 4566666
Q ss_pred EEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEE
Q 022277 130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV 206 (300)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v 206 (300)
.+++........+........+..+.+.|..+.+.|.+.+ ++++++++++|++++.++++ +.|++.+|++++||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 82 EVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE-AFLTLKDGSMLTARLV 160 (400)
T ss_pred EEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-EEEEEcCCCEEEeeEE
Confidence 6665432111112211112223346789999999998776 47899999999999888776 4488889989999999
Q ss_pred EEcCCCChHhhhhcCCCCCcc-ccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022277 207 IGCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN 276 (300)
Q Consensus 207 V~A~G~~s~~r~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 276 (300)
|+|||.+|.+|+.+++..+.. +.+..+...++. ..+.......++..+++..++|++++....+++..
T Consensus 161 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~ 229 (400)
T PRK08013 161 VGADGANSWLRNKADIPLTFWDYQHHALVATIRT--EEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSL 229 (400)
T ss_pred EEeCCCCcHHHHHcCCCccccccCcEEEEEEEec--cCCCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEc
Confidence 999999999999998765433 233344333333 33333322333444446668899876643344433
No 5
>PRK05868 hypothetical protein; Validated
Probab=99.95 E-value=2e-25 Score=196.41 Aligned_cols=218 Identities=20% Similarity=0.255 Sum_probs=161.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 138 (300)
.||+|||||++|+++|+.|+++|++|+|+|+.+.+...|.++.+.+++++.|+++|+++.+.........+.+.+.++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 58999999999999999999999999999999988888888999999999999999999887777777777777777765
Q ss_pred EEEecCCC---CCCCcceeeecHHHHHHHHHhcC-CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277 139 LRSFGFKD---EDASQEVRAVERRILLETLANQL-PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 139 ~~~~~~~~---~~~~~~~~~i~~~~l~~~l~~~~-~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s 214 (300)
+....... .........+.|..|.+.|.+.+ .+++++++++|++++.++++ +.|++.+|+++++|+||+|||.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvIgADG~~S 160 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDS-VRVTFERAAAREFDLVIGADGLHS 160 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCe-EEEEECCCCeEEeCEEEECCCCCc
Confidence 44322111 11112234678999999887765 58899999999999877666 458899999999999999999999
Q ss_pred HhhhhcCC-CCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeE-EEEEEEcC
Q 022277 215 PIAKWIGF-SEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKV-YWFICHNN 277 (300)
Q Consensus 215 ~~r~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~ 277 (300)
.+|+.+.. ..+.......+......+...+......++++++.++.++|..++.. ++++.+..
T Consensus 161 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 225 (372)
T PRK05868 161 NVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMD 225 (372)
T ss_pred hHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEec
Confidence 99999943 32222222223333333332233333333468888888999987544 44454443
No 6
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.95 E-value=5e-26 Score=202.91 Aligned_cols=219 Identities=20% Similarity=0.270 Sum_probs=159.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCcC----CCCceeeEchhHHHHHHHcCCcHHHHhc-cccccceE
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSLR----TGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMA 130 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~-~~~~----~~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~ 130 (300)
..+||+|||||++|+++|+.|++.|++|+|+|+. +... ...++..+.+++.++|+++|+++.+.+. ..+...+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~ 82 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAME 82 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEE
Confidence 3589999999999999999999999999999996 3221 2356788999999999999999998763 56666677
Q ss_pred EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277 131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207 (300)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV 207 (300)
+++..+.....++..........+.+.+..+.+.|.+.+ ++++++++++|++++.+++. +.|.+.+|++++||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 83 VWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE-AWLTLDNGQALTAKLVV 161 (405)
T ss_pred EEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-EEEEECCCCEEEeCEEE
Confidence 766543222222222112223345677888888887765 47899999999999887776 45888899999999999
Q ss_pred EcCCCChHhhhhcCCCCCcc-ccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277 208 GCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP 278 (300)
Q Consensus 208 ~A~G~~s~~r~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 278 (300)
+|||.+|.+|+.+++..+.. +++.++.+.+..+ .+.......++++++.+.++|++++..+++++..++
T Consensus 162 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~ 231 (405)
T PRK08850 162 GADGANSWLRRQMDIPLTHWDYGHSALVANVRTV--DPHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEP 231 (405)
T ss_pred EeCCCCChhHHHcCCCeeEEeeccEEEEEEEEcc--CCCCCEEEEEEcCCCceEEEECCCCCeEEEEEECCH
Confidence 99999999999998764432 3566666555432 233333445667777777899987655445555543
No 7
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.95 E-value=1.3e-25 Score=199.86 Aligned_cols=218 Identities=24% Similarity=0.343 Sum_probs=164.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC-CCc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE-DGR 137 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 137 (300)
.+|+|||||++||++|+.|++.|++|+|+||.+.+...|+++.+.+++.+.|+++|+++.+.........+.+.+. ...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 6899999999999999999999999999999998888899999999999999999999998775555444444331 111
Q ss_pred eEEEecCCC---CCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEE---cCCcEEEcCEEEE
Q 022277 138 ELRSFGFKD---EDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILEL---VNGTRIYANIVIG 208 (300)
Q Consensus 138 ~~~~~~~~~---~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~---~~g~~~~ad~vV~ 208 (300)
......... ......+..+.|..|.+.|.+.+ ++++++++++|++++.+++++ .+++ .+++++++|+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v-~v~~~~~~~~~~~~adlvIg 161 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSI-TATIIRTNSVETVSAAYLIA 161 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCce-EEEEEeCCCCcEEecCEEEE
Confidence 111111111 11123345689999999998876 468999999999998877663 3555 3345799999999
Q ss_pred cCCCChHhhhhcCCCCCccccceEEEEEeeCCCCC-------CCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277 209 CDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQ-------PFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277 (300)
Q Consensus 209 A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 277 (300)
|||.+|.+|+.++...+.|.++.+|++.+..+... +.......+++++.+++.+|+++++..+++....
T Consensus 162 ADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~ 237 (400)
T PRK06475 162 CDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITG 237 (400)
T ss_pred CCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEc
Confidence 99999999999977778888999998876543211 1122345566888899999999887766665443
No 8
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.95 E-value=2.7e-25 Score=197.78 Aligned_cols=217 Identities=25% Similarity=0.370 Sum_probs=168.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC-C
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE-D 135 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~ 135 (300)
++.||+|||||++|+++|..|++.|++|+|+||.+.+...|+++.+.+++.++|+++|+++.+.........+.+++. .
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 458999999999999999999999999999999998888889999999999999999999888776666666666653 4
Q ss_pred CceEEEecCCCC---CCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEc
Q 022277 136 GRELRSFGFKDE---DASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGC 209 (300)
Q Consensus 136 ~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A 209 (300)
+..+..++.... ..+.....+.|..+.+.|.+.+ .+++++++++|++++.++++ +.+.+.+|+++.||+||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-VTVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-eEEEEcCCCEEecCEEEEC
Confidence 555544443221 1233456789999999998876 25899999999999887776 4488888888999999999
Q ss_pred CCCChHhhhhc-CCCCCccccceEEEEEeeCCCCCCC--CCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022277 210 DGIRSPIAKWI-GFSEPKYVGHCAYRGLGYYPNGQPF--EPKLNYIYGRGVRAGYVPVSPTKVYWFICH 275 (300)
Q Consensus 210 ~G~~s~~r~~~-g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 275 (300)
+|.+|.+|+.+ |. .+.+.++..+++.++....... ......+.+++.+++++|+.++..+++++.
T Consensus 162 dG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~ 229 (396)
T PRK08163 162 DGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVT 229 (396)
T ss_pred CCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEE
Confidence 99999999988 54 5667788888877664322111 122345667788888999998876554443
No 9
>PRK07588 hypothetical protein; Provisional
Probab=99.95 E-value=3.2e-25 Score=196.92 Aligned_cols=217 Identities=22% Similarity=0.339 Sum_probs=165.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 138 (300)
.||+|||||++|+++|+.|++.|++|+|+||.+.....+.++.+.+++++.++++|+++.+.........+.+++..+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 38999999999999999999999999999999887777888999999999999999999998877777788888777776
Q ss_pred EEEecCCCC--CCCcceeeecHHHHHHHHHhcCC-CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 139 LRSFGFKDE--DASQEVRAVERRILLETLANQLP-PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 139 ~~~~~~~~~--~~~~~~~~i~~~~l~~~l~~~~~-g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
+..++.... ..+..+..+.|..|.+.|.+.+. +++++++++|++++.++++ +.|.+++|+++++|+||+|||.+|.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDG-VRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCe-EEEEECCCCEEEeCEEEECCCCCcc
Confidence 655543321 22334567999999999988764 5899999999999988777 4488999988999999999999999
Q ss_pred hhhhc-CCCC--CccccceEEEEEeeCCCCCCCC-CceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277 216 IAKWI-GFSE--PKYVGHCAYRGLGYYPNGQPFE-PKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP 278 (300)
Q Consensus 216 ~r~~~-g~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 278 (300)
+|+.+ +... +.+.+...+. .......+.. ..+..+.+++.++.++|+++++.++++.+..+
T Consensus 160 vR~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~ 224 (391)
T PRK07588 160 VRRLVFGPERDFEHYLGCKVAA--CVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAE 224 (391)
T ss_pred chhhccCCccceEEEcCcEEEE--EEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcC
Confidence 99987 3222 2233433332 2222222222 23445566787888999998887665555433
No 10
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.94 E-value=6e-26 Score=191.82 Aligned_cols=214 Identities=40% Similarity=0.745 Sum_probs=167.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEE-EcCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAV-KSEDG 136 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~ 136 (300)
..+|+|||||++||++|..|+++|++|+|+|+...++..|+++++..++++.++.+++.+.+.....+..+..+ ....|
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg 81 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG 81 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence 46899999999999999999999999999999999998999999999999999999999999998888886644 55778
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCC------eEEEEEEcCCceEEEEEcCCcEEEcCEEEEcC
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSS------ELAKIETSGNGVTILELVNGTRIYANIVIGCD 210 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~------~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~ 210 (300)
.....+++..... +......|..+.+.|.+.++..+|+++. ....++...... .|.+.+|.++++|++|+||
T Consensus 82 ~~~~~~~~~~~~~-~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~-~v~l~~g~~~~~dlligCD 159 (420)
T KOG2614|consen 82 KEVSRILYGEPDE-YILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKL-VVHLSDGTTVKGDLLIGCD 159 (420)
T ss_pred CeeEecccCCchH-HHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeeccccc-ceecCCCcEEEeeEEEEcC
Confidence 8777776654321 1223344555666666666655676664 333344433332 3788999999999999999
Q ss_pred CCChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEE
Q 022277 211 GIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI 273 (300)
Q Consensus 211 G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 273 (300)
|++|.+|++|+...|.+.++++|++...++...++......+.+.+.+.|..|.....++|..
T Consensus 160 Ga~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~~~ 222 (420)
T KOG2614|consen 160 GAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFL 222 (420)
T ss_pred chHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccCCeEEEcccCCceEEEEEee
Confidence 999999999988779999999999999888777776555556666677777766666666555
No 11
>PRK06847 hypothetical protein; Provisional
Probab=99.94 E-value=7.9e-25 Score=193.49 Aligned_cols=217 Identities=26% Similarity=0.401 Sum_probs=170.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
...||+|||||++||++|+.|++.|++|+|+|+.+.+...|.++.+.+++.+.|+++|+.+.+.........+.+++..+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 45799999999999999999999999999999999887788999999999999999999998887777777777887777
Q ss_pred ceEEEecCCCC--CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277 137 RELRSFGFKDE--DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (300)
Q Consensus 137 ~~~~~~~~~~~--~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (300)
..+..++.... ........+.|..+.+.|.+.+ .|++++++++|++++.++++ +.|.+.+|+++.+|+||+|+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG-VTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-EEEEEcCCCEEEcCEEEECcCC
Confidence 66554432211 1112234678888888888776 47899999999999887766 4588888989999999999999
Q ss_pred ChHhhhhc-CCC-CCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277 213 RSPIAKWI-GFS-EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277 (300)
Q Consensus 213 ~s~~r~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 277 (300)
+|.+|+.+ +.. .+.+.+...+++.++.+. .... ..++.+++.++.++|..++..++++....
T Consensus 162 ~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 225 (375)
T PRK06847 162 YSKVRSLVFPDEPEPEYTGQGVWRAVLPRPA--EVDR-SLMYLGPTTKAGVVPLSEDLMYLFVTEPR 225 (375)
T ss_pred CcchhhHhcCCCCCceeccceEEEEEecCCC--Cccc-eEEEeCCCcEEEEEcCCCCeEEEEEeccC
Confidence 99999988 543 567778877776554432 2222 35667778888899999887776665544
No 12
>PRK07045 putative monooxygenase; Reviewed
Probab=99.94 E-value=7.4e-25 Score=194.41 Aligned_cols=218 Identities=22% Similarity=0.287 Sum_probs=156.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhcccc-ccceEEEcCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLE-IKGMAVKSED 135 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~ 135 (300)
..+||+||||||+|+++|+.|+++|++|+|+|+.+.+...+.+..+.+++.++|+++|+++.+...... ...+.+. ..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~-~~ 82 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY-HD 82 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe-cC
Confidence 568999999999999999999999999999999998765556667999999999999999988765432 3334443 34
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCc-eEEEEEcCCcEEEcCEEEEcCC
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNG-VTILELVNGTRIYANIVIGCDG 211 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~~ad~vV~A~G 211 (300)
+.....+++...........+.|..+.+.|.+.+ ++++++++++|++++.++++ ++.|++.+|+++.+|+||+|||
T Consensus 83 g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG 162 (388)
T PRK07045 83 KELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADG 162 (388)
T ss_pred CcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCC
Confidence 5555444443222122234578888988888765 47899999999999987665 4568888998999999999999
Q ss_pred CChHhhhhc-CCCC--CccccceEEEEEeeCCCCCCCCCceEEEE-eCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277 212 IRSPIAKWI-GFSE--PKYVGHCAYRGLGYYPNGQPFEPKLNYIY-GRGVRAGYVPVSPTKVYWFICHNNP 278 (300)
Q Consensus 212 ~~s~~r~~~-g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~ 278 (300)
.+|.+|+.+ +... +.+.+...+ +.+...... .....+++ .++++++++|..++...+++.+..+
T Consensus 163 ~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 230 (388)
T PRK07045 163 ARSMIRDDVLRMPAERVPYATPMAF-GTIALTDSV--RECNRLYVDSNQGLAYFYPIGDQATRLVVSFPAD 230 (388)
T ss_pred CChHHHHHhhCCCcccCCCCcceeE-EEEeccCCc--cccceEEEcCCCceEEEEEcCCCcEEEEEEeccc
Confidence 999999975 5442 334344333 333332221 11222334 3466778999998877776665543
No 13
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.94 E-value=5.9e-25 Score=202.38 Aligned_cols=221 Identities=23% Similarity=0.296 Sum_probs=166.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
+..+||+|||||++|+++|+.|++.|++|+|+||.+.+...+++..+.++++++|+++|+.+.+.........+.+++..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 35789999999999999999999999999999999988778889999999999999999999988877777778887777
Q ss_pred CceEEEecCCC-CCCC-cceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEc--CC--cEEEcCEE
Q 022277 136 GRELRSFGFKD-EDAS-QEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELV--NG--TRIYANIV 206 (300)
Q Consensus 136 ~~~~~~~~~~~-~~~~-~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~--~g--~~~~ad~v 206 (300)
+..+..+.... ...+ .....+.+..+.+.|.+.+ ++++|+++++|++++++++++. |+++ +| ++++||+|
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~~~G~~~~i~ad~v 166 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTDADGQRETVRARYV 166 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEcCCCCEEEEEEEEE
Confidence 76665555311 1111 2234577888888887755 4899999999999999888744 6665 46 47999999
Q ss_pred EEcCCCChHhhhhcCCCCCccccceEEEEEee--CCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277 207 IGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGY--YPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP 278 (300)
Q Consensus 207 V~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 278 (300)
|+|||.+|.+|+.+|+..+.......|. .++ .............+++++....++|.+++...|.+.....
T Consensus 167 VgADG~~S~vR~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~ 239 (538)
T PRK06183 167 VGCDGANSFVRRTLGVPFEDLTFPERWL-VVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPG 239 (538)
T ss_pred EecCCCchhHHHHcCCeeeCCCccceEE-EEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCC
Confidence 9999999999999987654433233332 223 2222222233455667778888999999888776665443
No 14
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.94 E-value=3.8e-25 Score=198.09 Aligned_cols=213 Identities=20% Similarity=0.270 Sum_probs=149.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC--CCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--GGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~--~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 134 (300)
..+||+|||||++|+++|..|++.|++|+|+||.+.+.. .+.++.+.+++.+.|+.+|+++++.........+.+.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 468999999999999999999999999999999987643 477889999999999999999998877666666666654
Q ss_pred CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcC-C--cEEEcCEEEE
Q 022277 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVN-G--TRIYANIVIG 208 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~-g--~~~~ad~vV~ 208 (300)
.+.....+...........+...+..+.+.|.+.+ +++++++++++++++.++++ +.|++.+ + .+++||+||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-ATVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-eEEEEccCCcceEEeeeEEEE
Confidence 44333333322111112223344456777777665 47899999999999887776 3477653 2 3699999999
Q ss_pred cCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCC-ceEEEEeCCeEEEEEEcCCCeEEEEE
Q 022277 209 CDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEP-KLNYIYGRGVRAGYVPVSPTKVYWFI 273 (300)
Q Consensus 209 A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~ 273 (300)
|||.+|.+|+.++.....+. ...++...+.... +... ....++ ++++++++|++++..++++
T Consensus 176 ADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~ 239 (415)
T PRK07364 176 ADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEA--PHNDIAYERFW-PSGPFAILPLPGNRCQIVW 239 (415)
T ss_pred eCCCCchhHHHhCCCceeecCCCEEEEEEEEccC--CCCCEEEEEec-CCCCeEEeECCCCCEEEEE
Confidence 99999999999987644332 2233333343322 2222 222344 4455679999988776543
No 15
>PRK06184 hypothetical protein; Provisional
Probab=99.94 E-value=1.3e-24 Score=198.70 Aligned_cols=216 Identities=21% Similarity=0.201 Sum_probs=155.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
..+||+||||||+||++|+.|+++|++|+|+||.+.+...+++..+.++++++|+++|+.+.+.+.........++...+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCc
Confidence 45899999999999999999999999999999999887788899999999999999999999988776666665555444
Q ss_pred ceEEEecCCC------CCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEE---cCCcEEEcCE
Q 022277 137 RELRSFGFKD------EDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILEL---VNGTRIYANI 205 (300)
Q Consensus 137 ~~~~~~~~~~------~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~---~~g~~~~ad~ 205 (300)
... ...+.. .........+.+..+.+.|.+.+ .+++++++++|++++++++++. +.+ .++++++||+
T Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~~~~i~a~~ 159 (502)
T PRK06184 82 SVA-ESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVT-ARVAGPAGEETVRARY 159 (502)
T ss_pred eEE-EeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEE-EEEEeCCCeEEEEeCE
Confidence 322 222111 01112234677888888887766 4789999999999998887744 555 5556899999
Q ss_pred EEEcCCCChHhhhhcCCCCCccccc--eEEEEEeeCCCCCCCCCceEEEEeCC-eEEEEEEcCCCeEEEEEEEc
Q 022277 206 VIGCDGIRSPIAKWIGFSEPKYVGH--CAYRGLGYYPNGQPFEPKLNYIYGRG-VRAGYVPVSPTKVYWFICHN 276 (300)
Q Consensus 206 vV~A~G~~s~~r~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~ 276 (300)
||+|||.+|.+|+.+|+........ ..+......+. .....+.++..+. ..+.++|++++..+++++..
T Consensus 160 vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 231 (502)
T PRK06184 160 LVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTG--LDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAPL 231 (502)
T ss_pred EEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeec--CCCcceEEccCCCCcEEEEEEccCCCeEEEEEEc
Confidence 9999999999999998775544321 22222222221 1223344444443 67778999877655554443
No 16
>PRK07236 hypothetical protein; Provisional
Probab=99.94 E-value=2e-24 Score=191.40 Aligned_cols=202 Identities=22% Similarity=0.318 Sum_probs=153.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc-CCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL-RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~-~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 134 (300)
+...+|+|||||++||++|+.|++.|++|+|+||.+.+ ...|.++.+.+++.+.|+++|+.+.. ..........+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~ 82 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLDR 82 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEeC
Confidence 45689999999999999999999999999999999754 34677889999999999999997654 33444445555555
Q ss_pred CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s 214 (300)
.+..+...+.. .....+..+.+.|.+.+++++++++++|++++.++++ +.|.+.+|++++||+||+|||.+|
T Consensus 83 ~g~~~~~~~~~-------~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 83 DGRVVQRRPMP-------QTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR-VTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred CCCEeeccCCC-------ccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCCc
Confidence 56544332221 1224567888888888877889999999999988777 458899999999999999999999
Q ss_pred Hhhhhc-CCCCCccccceEEEEEeeCCCC-CC----CCCceEEEEeCCeEEEEEEcCC
Q 022277 215 PIAKWI-GFSEPKYVGHCAYRGLGYYPNG-QP----FEPKLNYIYGRGVRAGYVPVSP 266 (300)
Q Consensus 215 ~~r~~~-g~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~p~~~ 266 (300)
.+|+.+ +...+.|.++.+|++++..... .. .......+++++.+++.+|+++
T Consensus 155 ~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (386)
T PRK07236 155 TVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPG 212 (386)
T ss_pred hHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCC
Confidence 999998 5456778888888876542111 11 1233455667787888888864
No 17
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.94 E-value=2.5e-24 Score=191.31 Aligned_cols=217 Identities=19% Similarity=0.234 Sum_probs=154.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-----CCceeeEchhHHHHHHHcCCcHHHHhc-cccccce
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGM 129 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-----~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~ 129 (300)
...+||+|||||++|+++|+.|+++|++|+|+||.+.+.. ..+...+.+.+.++|+++|+++.+... ..+...+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 4568999999999999999999999999999999875431 234578899999999999999988753 4455556
Q ss_pred EEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277 130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207 (300)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV 207 (300)
.+++..+.....++..........+.+++..+.+.|.+.+ .|++++++++|++++.++++ +.|++.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vV 162 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR-VRLRLDDGRRLEAALAI 162 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-EEEEECCCCEEEeCEEE
Confidence 6665443322233322222223346788899988888776 48899999999999987776 44888888889999999
Q ss_pred EcCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022277 208 GCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH 275 (300)
Q Consensus 208 ~A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 275 (300)
+|+|.+|.+|+.+|+..+... .+.++...++. ..+........+.+++...++|++++..++++.+
T Consensus 163 ~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~ 229 (392)
T PRK08773 163 AADGAASTLRELAGLPVSRHDYAQRGVVAFVDT--EHPHQATAWQRFLPTGPLALLPFADGRSSIVWTL 229 (392)
T ss_pred EecCCCchHHHhhcCCceEEEeccEEEEEEEEc--cCCCCCEEEEEeCCCCcEEEEECCCCceEEEEEC
Confidence 999999999999987755321 22222222222 2233333333345566677999998876554444
No 18
>PRK08244 hypothetical protein; Provisional
Probab=99.94 E-value=2.1e-24 Score=197.00 Aligned_cols=210 Identities=21% Similarity=0.229 Sum_probs=152.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
.+||+||||||+||++|+.|++.|++|+||||.+.+...++++.+.++++++|+++|+++.+...........+....+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 48999999999999999999999999999999998877899999999999999999999998876655555444332211
Q ss_pred eEEEecCCCC-CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc--CC-cEEEcCEEEEcCC
Q 022277 138 ELRSFGFKDE-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV--NG-TRIYANIVIGCDG 211 (300)
Q Consensus 138 ~~~~~~~~~~-~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~--~g-~~~~ad~vV~A~G 211 (300)
+++... ........+.+..+.+.|.+.+ .|+++++++++++++.+++++. +.+. +| ++++||+||+|||
T Consensus 82 ----~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~i~a~~vVgADG 156 (493)
T PRK08244 82 ----LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVE-VVVRGPDGLRTLTSSYVVGADG 156 (493)
T ss_pred ----CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEE-EEEEeCCccEEEEeCEEEECCC
Confidence 112111 1122345678888888887665 4899999999999998877743 5553 45 4799999999999
Q ss_pred CChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEE
Q 022277 212 IRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFIC 274 (300)
Q Consensus 212 ~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 274 (300)
.+|.+|+.+|+..+... .+..+.+..... .+.......++.++++++++|++++.+++++.
T Consensus 157 ~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~ 218 (493)
T PRK08244 157 AGSIVRKQAGIAFPGTDATFTAMLGDVVLK--DPPPSSVLSLCTREGGVMIVPLSGGIYRVLII 218 (493)
T ss_pred CChHHHHhcCCCccCCCcceEEEEEEEEec--CCCCcceeEEEeCCceEEEEECCCCeEEEEEE
Confidence 99999999987654332 223333222222 22222334456777888899999987765543
No 19
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.94 E-value=9.8e-25 Score=194.69 Aligned_cols=208 Identities=20% Similarity=0.280 Sum_probs=147.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc--------CCCCceeeEchhHHHHHHHcCCcHHHHhc-cccccc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL--------RTGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKG 128 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~--------~~~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~ 128 (300)
.+||+|||||++|+++|+.|+++|++|+|+|+.+.. ....++..+.+++.++|+++|+++.+... ..+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 479999999999999999999999999999998731 11234567899999999999999988753 455566
Q ss_pred eEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEE
Q 022277 129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV 206 (300)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v 206 (300)
+.+++..+.....+...........+.+.+..+.+.|.+.+ .++++++++++++++.++++ +.|.+.+|++++||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEE
Confidence 77776655433333322111123345788888888887766 37899999999999988777 4588888888999999
Q ss_pred EEcCCCChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCC
Q 022277 207 IGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPT 267 (300)
Q Consensus 207 V~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 267 (300)
|+|||.+|.+|+.+|+..+... +.....+.......+........+.++++++++|++++
T Consensus 161 VgAdG~~S~vR~~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~ 220 (405)
T PRK05714 161 VAADGANSAVRRLAGCATREWD-YLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERD 220 (405)
T ss_pred EEecCCCchhHHhcCCCccccc-CCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCC
Confidence 9999999999999987644322 21111222222222333222233456667889999754
No 20
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.94 E-value=1.7e-24 Score=193.61 Aligned_cols=212 Identities=22% Similarity=0.343 Sum_probs=158.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhcccc----ccceEEE--
Q 022277 60 DIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLE----IKGMAVK-- 132 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~----~~~~~~~-- 132 (300)
+|+|||||++||++|+.|+++| ++|+|+||.+.+...|.++.+.+++.+.|+.+|+.+.+...... .....+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 7999999999999999999998 69999999998888899999999999999999998777653321 1111111
Q ss_pred c-CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277 133 S-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (300)
Q Consensus 133 ~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (300)
+ ..+..... .. ........+.|..|.+.|.+.+++..++++++|++++.++++ +.|.+.+|.++++|+||+|||
T Consensus 82 ~~~~~~~~~~-~~---~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vVgADG 156 (414)
T TIGR03219 82 NGSDASYLGA-TI---APGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE-VQVLFTDGTEYRCDLLIGADG 156 (414)
T ss_pred ecCccceeee-ec---cccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc-EEEEEcCCCEEEeeEEEECCC
Confidence 1 11111111 00 011223458899999999999877789999999999987777 568889998999999999999
Q ss_pred CChHhhhhcC------CCCCccccceEEEEEeeCCCC----------CCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022277 212 IRSPIAKWIG------FSEPKYVGHCAYRGLGYYPNG----------QPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH 275 (300)
Q Consensus 212 ~~s~~r~~~g------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 275 (300)
.+|.+|+.+. ...|.+.|+.+|+++++.... ....+...++++++.+++++|+.+++..+++++
T Consensus 157 ~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 236 (414)
T TIGR03219 157 IKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAF 236 (414)
T ss_pred ccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEEEE
Confidence 9999999882 134678889999987653221 011123456778888888999999987665555
Q ss_pred c
Q 022277 276 N 276 (300)
Q Consensus 276 ~ 276 (300)
.
T Consensus 237 ~ 237 (414)
T TIGR03219 237 I 237 (414)
T ss_pred E
Confidence 4
No 21
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.94 E-value=8.6e-25 Score=194.04 Aligned_cols=216 Identities=20% Similarity=0.282 Sum_probs=156.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
+..+||+|||||++|+++|+.|++.|++|+|+|+.+.+. ..++..+.+.+.++|+++|+++.+.....+...+.+++.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT 83 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence 456899999999999999999999999999999998653 3456677888999999999999988777777777777765
Q ss_pred CceEE----EecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEE
Q 022277 136 GRELR----SFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIG 208 (300)
Q Consensus 136 ~~~~~----~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~ 208 (300)
+.... .+...........+.+.+..+.+.|.+.+ +++. +++++|++++.++++ +.|++++|++++||+||+
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07494 84 GRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-VTVTLADGTTLSARLVVG 161 (388)
T ss_pred CCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-EEEEECCCCEEEEeEEEE
Confidence 54321 12111111223346788999999988776 2445 889999999888777 448888888999999999
Q ss_pred cCCCChHhhhhcCCCCCc-cccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277 209 CDGIRSPIAKWIGFSEPK-YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277 (300)
Q Consensus 209 A~G~~s~~r~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 277 (300)
|||.+|.+|+.+|+.... .+++.++...+.. ..+.......++...+.+.++|+++++.. ++++..
T Consensus 162 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~-~v~~~~ 228 (388)
T PRK07494 162 ADGRNSPVREAAGIGVRTWSYPQKALVLNFTH--SRPHQNVSTEFHTEGGPFTQVPLPGRRSS-LVWVVR 228 (388)
T ss_pred ecCCCchhHHhcCCCceecCCCCEEEEEEEec--cCCCCCEEEEEeCCCCcEEEEECCCCcEE-EEEECC
Confidence 999999999999876433 2355555433332 23333332334445566778999987654 444443
No 22
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.94 E-value=1.5e-24 Score=194.88 Aligned_cols=214 Identities=17% Similarity=0.203 Sum_probs=152.7
Q ss_pred CcEEEECCCHHHHHHHHHHHH----cCCcEEEEecCCCcCC------------CCceeeEchhHHHHHHHcCCcHHHHhc
Q 022277 59 EDIVIVGAGIAGLATAVSLQR----LGIGSLVIEQADSLRT------------GGTSLTLFKNGWSVLDALGVGSDLRSQ 122 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~----~G~~V~viE~~~~~~~------------~g~~~~~~~~~~~~l~~~g~~~~~~~~ 122 (300)
+||+|||||++|+++|+.|++ .|++|+|||+.+.+.. .+++..+.++++++|+.+|+++.+...
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 8999999999653321 357899999999999999999998764
Q ss_pred -cccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---C--CCeEEeCCeEEEEEEc-------CCc
Q 022277 123 -FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---P--PESVQFSSELAKIETS-------GNG 189 (300)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~--g~~i~~~~~v~~i~~~-------~~~ 189 (300)
......+.+++..+.....++... ......+.+.+..+.+.|.+.+ . +++++++++|++++.+ +++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~ 159 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW 159 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence 345566666654443333333221 1223356788988888887766 2 4899999999999752 234
Q ss_pred eEEEEEcCCcEEEcCEEEEcCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCe
Q 022277 190 VTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTK 268 (300)
Q Consensus 190 ~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 268 (300)
+.|++.+|++++||+||+|||.+|.+|+.+|+...... .+.++.+.+.... .++.......+.+++.+.++|++++.
T Consensus 160 -v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~-~~~~~~~~~~f~~~g~~~~lPl~~~~ 237 (437)
T TIGR01989 160 -VHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEE-ATENDVAWQRFLPTGPIALLPLPDNN 237 (437)
T ss_pred -eEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEccc-CCCCCeEEEEECCCCCEEEeECCCCC
Confidence 55888999999999999999999999999988765442 2333433333322 12333333334466667789999887
Q ss_pred EEEEEEE
Q 022277 269 VYWFICH 275 (300)
Q Consensus 269 ~~~~~~~ 275 (300)
.++++..
T Consensus 238 ~~~~~~~ 244 (437)
T TIGR01989 238 STLVWST 244 (437)
T ss_pred EEEEEeC
Confidence 7654444
No 23
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.94 E-value=9.1e-25 Score=193.54 Aligned_cols=209 Identities=20% Similarity=0.213 Sum_probs=151.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCCcCCC----CceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTG----GTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~~~~~----g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 134 (300)
||+||||||+|+++|+.|+++| ++|+|+||.+.+... +++..+.+++.+.|+++|+++.+.........+.+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999999876542 46789999999999999999888766655555555443
Q ss_pred CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (300)
.......+...........+.++|..+.+.|.+.+ +|++++++++|++++.++++ +.|.+++|+++.||+||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vV~AdG 159 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-VRVTLDNGQQLRAKLLIAADG 159 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-EEEEECCCCEEEeeEEEEecC
Confidence 22211112211111122346789999999998876 37899999999999887776 448888888899999999999
Q ss_pred CChHhhhhcCCCCCc-cccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCC-eEEE
Q 022277 212 IRSPIAKWIGFSEPK-YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPT-KVYW 271 (300)
Q Consensus 212 ~~s~~r~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~ 271 (300)
.+|.+|+.+++..+. ..++..+...+.... +.......++.+++.++++|.+++ ...+
T Consensus 160 ~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~p~~~~~~~~~ 219 (382)
T TIGR01984 160 ANSKVRELLSIPTEEHDYNQTALIANIRHEQ--PHQGCAFERFTPHGPLALLPLKDNYRSSL 219 (382)
T ss_pred CChHHHHHcCCCCcccccCCEEEEEEEEecC--CCCCEEEEeeCCCCCeEECcCCCCCCEEE
Confidence 999999999866433 334555554444322 222222334555566778999988 4443
No 24
>PRK07538 hypothetical protein; Provisional
Probab=99.93 E-value=7.7e-24 Score=189.26 Aligned_cols=217 Identities=21% Similarity=0.277 Sum_probs=161.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 138 (300)
.||+|||||++||++|+.|+++|++|+|+||.+.+...|.++.+.+++.+.|+++|+++.+.........+.+++..+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 48999999999999999999999999999999988778999999999999999999999988777766777777766665
Q ss_pred EEEecCCCC-CCCcceeeecHHHHHHHHHhcC---CC-CeEEeCCeEEEEEEcCCceEEEEEcCC-----cEEEcCEEEE
Q 022277 139 LRSFGFKDE-DASQEVRAVERRILLETLANQL---PP-ESVQFSSELAKIETSGNGVTILELVNG-----TRIYANIVIG 208 (300)
Q Consensus 139 ~~~~~~~~~-~~~~~~~~i~~~~l~~~l~~~~---~g-~~i~~~~~v~~i~~~~~~~~~v~~~~g-----~~~~ad~vV~ 208 (300)
+...+.... ........++|..|.+.|.+.+ .+ ..|+++++|++++.+++++. +.+.++ ++++||+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceEEeeEEEE
Confidence 543322111 1122345689999999887765 14 46999999999998877633 445432 4799999999
Q ss_pred cCCCChHhhhhcCCC--CCccccceEEEEEeeCCCCCCCCCceEEEEe-CCeEEEEEEcCCC-------eEEEEEEEcCC
Q 022277 209 CDGIRSPIAKWIGFS--EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYG-RGVRAGYVPVSPT-------KVYWFICHNNP 278 (300)
Q Consensus 209 A~G~~s~~r~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~~~ 278 (300)
|||.+|.+|+.++.. .+.+.+...|++.++.+... .....++++ .+..++++|+.++ .+.|++.+..+
T Consensus 160 ADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~ 237 (413)
T PRK07538 160 ADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFL--TGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRVD 237 (413)
T ss_pred CCCCCHHHhhhhcCCCCCCcccceEEEEEeecCcccc--CCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcCC
Confidence 999999999999433 56778888888876654321 222223343 3566778998764 45566555443
No 25
>PRK09126 hypothetical protein; Provisional
Probab=99.93 E-value=2.2e-24 Score=191.68 Aligned_cols=217 Identities=18% Similarity=0.225 Sum_probs=153.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-----CCCceeeEchhHHHHHHHcCCcHHHHhcc-ccccceE
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-----TGGTSLTLFKNGWSVLDALGVGSDLRSQF-LEIKGMA 130 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~-----~~g~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~~~ 130 (300)
+.+||+||||||+|+++|+.|+++|++|+|+||.+.+. ..|.++.+.+++.+.|+++|+++.+.... .+.....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 46899999999999999999999999999999998642 34667788999999999999988876543 3344555
Q ss_pred EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277 131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207 (300)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV 207 (300)
+++........++..........+.+.+..+.+.|.+.+ .|++++++++|++++.+++. +.|.+++|++++||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~a~~vI 160 (392)
T PRK09126 82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-AQVTLANGRRLTARLLV 160 (392)
T ss_pred EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-EEEEEcCCCEEEeCEEE
Confidence 554332222222211111122334577778887777655 48999999999999887666 45888888899999999
Q ss_pred EcCCCChHhhhhcCCCCC-ccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022277 208 GCDGIRSPIAKWIGFSEP-KYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN 276 (300)
Q Consensus 208 ~A~G~~s~~r~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 276 (300)
+|||.+|.+|+.+|+... ...+...+...... ..+.......+++.+.+++++|.+++.+++++.+.
T Consensus 161 ~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~ 228 (392)
T PRK09126 161 AADSRFSATRRQLGIGADMHDFGRTMLVCRMRH--ELPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLP 228 (392)
T ss_pred EeCCCCchhhHhcCCCccccccCCeEEEEEEec--cCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECC
Confidence 999999999999976532 23344444333322 22223334456677778889999988776655443
No 26
>PTZ00367 squalene epoxidase; Provisional
Probab=99.93 E-value=6.8e-24 Score=193.76 Aligned_cols=218 Identities=18% Similarity=0.187 Sum_probs=159.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-cCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS-LRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~-~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
..+||+|||||++|+++|+.|++.|++|+|+||+.. ......+..+++++.+.|+++|+++.+........++.+++.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~~ 111 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDHK 111 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEECC
Confidence 568999999999999999999999999999999862 1123345678999999999999999887767677777777765
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC-----CCCeEEeCCeEEEEEEcCCc----eEEEEE--cC-------
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL-----PPESVQFSSELAKIETSGNG----VTILEL--VN------- 197 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~-----~g~~i~~~~~v~~i~~~~~~----~~~v~~--~~------- 197 (300)
+... ..++.. ......+.+..+.+.|.+.+ +++++.. .+|+++..+++. +.+|++ .+
T Consensus 112 G~~~-~i~~~~---~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~ 186 (567)
T PTZ00367 112 GKQV-KLPYGA---GASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPEN 186 (567)
T ss_pred CCEE-EecCCC---CCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCccccccc
Confidence 6543 233321 22334456777777776544 5788864 578887655432 333433 33
Q ss_pred ----------------CcEEEcCEEEEcCCCChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEE
Q 022277 198 ----------------GTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGY 261 (300)
Q Consensus 198 ----------------g~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (300)
++++.||+||+|||.+|.+|+.++...+.+.+...|++........+.+....+++++++++++
T Consensus 187 ~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~ 266 (567)
T PTZ00367 187 PFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILS 266 (567)
T ss_pred ccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEE
Confidence 4579999999999999999999987666666666776654333334445555677899999999
Q ss_pred EEcCCCeEEEEEEEcCCC
Q 022277 262 VPVSPTKVYWFICHNNPT 279 (300)
Q Consensus 262 ~p~~~~~~~~~~~~~~~~ 279 (300)
+|+++++.++++++..+.
T Consensus 267 yPl~~~~~r~lv~~~~~~ 284 (567)
T PTZ00367 267 YRLDDNELRVLVDYNKPT 284 (567)
T ss_pred EEcCCCeEEEEEEecCCc
Confidence 999999999888886653
No 27
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.93 E-value=6.8e-24 Score=189.27 Aligned_cols=212 Identities=19% Similarity=0.293 Sum_probs=156.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcC--CCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS 133 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~--~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 133 (300)
.+||+|||||++|+++|..|+++| ++|+|+||.+... ..+++..+.+++.++|+.+|+++.+.....+...+.+++
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 379999999999999999999995 9999999997643 347899999999999999999999887777776676665
Q ss_pred CCCceE---EEecCCCC--CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEE
Q 022277 134 EDGREL---RSFGFKDE--DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV 206 (300)
Q Consensus 134 ~~~~~~---~~~~~~~~--~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v 206 (300)
..+... ..+.+... ......+.+++..+.+.|.+.+ .|++++++++|++++.+++. +.|.+.+|+++.||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~v 159 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG-VTVTLSDGSVLEARLL 159 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEE
Confidence 332111 11222111 1122345789999999998876 48899999999999887776 4488888888999999
Q ss_pred EEcCCCChHhhhhcCCCCCcc-ccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEE
Q 022277 207 IGCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWF 272 (300)
Q Consensus 207 V~A~G~~s~~r~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 272 (300)
|+|+|.+|.+|+.+|+..+.. .++.++....+.. .+.......++.++++++++|+++++.++.
T Consensus 160 I~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~ 224 (403)
T PRK07333 160 VAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHE--RPHGGRAEEHFLPAGPFAILPLKGNRSSLV 224 (403)
T ss_pred EEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcC--CCCCCEEEEEeCCCCceEEeECCCCCeEEE
Confidence 999999999999998764322 2444444333332 222233344455666778999999887643
No 28
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.93 E-value=4.2e-24 Score=189.47 Aligned_cols=213 Identities=21% Similarity=0.288 Sum_probs=156.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCC-----CceeeEchhHHHHHHHcCCcHHHHh-ccccccceEEEc
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG-----GTSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMAVKS 133 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~-----g~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~ 133 (300)
||+|||||++|+++|+.|++.|++|+|+||.+.++.. +++..+.+++.+.|+++|+++++.. .......+.++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999999876432 5778999999999999999999887 666666777776
Q ss_pred CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CC-CeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcC
Q 022277 134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PP-ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCD 210 (300)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g-~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~ 210 (300)
..+.....+...........+.+.+..+.+.|.+.+ .+ ++++++++|++++.++++ +.+.+++|+++.+|+||+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~~~~vi~ad 159 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDH-VELTLDDGQQLRARLLVGAD 159 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe-eEEEECCCCEEEeeEEEEeC
Confidence 554432223221111223346788999999988876 23 899999999999887776 45888899889999999999
Q ss_pred CCChHhhhhcCCCCCcc-ccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022277 211 GIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH 275 (300)
Q Consensus 211 G~~s~~r~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 275 (300)
|.+|.+|+.+++..+.. .+...+......+ .+.......++.++++++++|.+++...+.+..
T Consensus 160 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~ 223 (385)
T TIGR01988 160 GANSKVRQLAGIPTTGWDYGQSAVVANVKHE--RPHQGTAWERFTPTGPLALLPLPDNRSSLVWTL 223 (385)
T ss_pred CCCCHHHHHcCCCccccccCCeEEEEEEEec--CCCCCEEEEEecCCCCEEEeECCCCCeEEEEEC
Confidence 99999999998654332 2233443333322 222222333445666788999999877655544
No 29
>PRK07190 hypothetical protein; Provisional
Probab=99.93 E-value=1.1e-23 Score=190.68 Aligned_cols=216 Identities=19% Similarity=0.264 Sum_probs=152.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..+.+++.++|+.+|+++.+............+.. +
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~-g 82 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWAN-G 82 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecC-C
Confidence 568999999999999999999999999999999998877899999999999999999999988775554444433332 2
Q ss_pred ceEEEec--CCC-C-CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcC
Q 022277 137 RELRSFG--FKD-E-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCD 210 (300)
Q Consensus 137 ~~~~~~~--~~~-~-~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~ 210 (300)
..+.... +.. . ........+.+..+.+.|.+.+ .|++++++++|++++.+++++. +.+.+|++++|++||+||
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~-v~~~~g~~v~a~~vVgAD 161 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCL-TTLSNGERIQSRYVIGAD 161 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeE-EEECCCcEEEeCEEEECC
Confidence 2221111 110 0 1122234567777777777655 4899999999999999888744 667778889999999999
Q ss_pred CCChHhhhhcCCCCCccccceEEEEE-eeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEE
Q 022277 211 GIRSPIAKWIGFSEPKYVGHCAYRGL-GYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFIC 274 (300)
Q Consensus 211 G~~s~~r~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 274 (300)
|.+|.+|+.+|+..+.......|... +..+...+.......+..+.+.++++|.+++...+++.
T Consensus 162 G~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~ 226 (487)
T PRK07190 162 GSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVR 226 (487)
T ss_pred CCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEE
Confidence 99999999999876654433323211 22222222212233344555666678998776654443
No 30
>PRK06185 hypothetical protein; Provisional
Probab=99.93 E-value=1.7e-23 Score=186.97 Aligned_cols=213 Identities=19% Similarity=0.242 Sum_probs=149.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhc-cccccceEEEcC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMAVKSE 134 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~ 134 (300)
...+||+|||||++|+++|+.|++.|++|+|+|+.+......++..+.+.+.++|+++|+++.+.+. ......+.++..
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 3679999999999999999999999999999999876544556788999999999999999888663 334455555533
Q ss_pred CCceEEEecCCCCC-CCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEE--cCCc-EEEcCEEE
Q 022277 135 DGRELRSFGFKDED-ASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILEL--VNGT-RIYANIVI 207 (300)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~--~~g~-~~~ad~vV 207 (300)
+......++.... .......+.+..+.+.|.+.+ ++++++++++|+++..+++.+..|.+ .+|+ +++||+||
T Consensus 84 -~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI 162 (407)
T PRK06185 84 -GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVV 162 (407)
T ss_pred -CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEE
Confidence 3323333332221 123345678888888887755 47899999999999988777544443 4564 79999999
Q ss_pred EcCCCChHhhhhcCCCCCcccc-ceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEE
Q 022277 208 GCDGIRSPIAKWIGFSEPKYVG-HCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWF 272 (300)
Q Consensus 208 ~A~G~~s~~r~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 272 (300)
+|||.+|.+|+.+|+..+.... .... .+..+............+.++++++++|.+ +.+.+.
T Consensus 163 ~AdG~~S~vr~~~gi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~ 225 (407)
T PRK06185 163 GADGRHSRVRALAGLEVREFGAPMDVL--WFRLPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCG 225 (407)
T ss_pred ECCCCchHHHHHcCCCccccCCCceeE--EEecCCCCCCCcccceEecCCcEEEEEcCC-CeEEEE
Confidence 9999999999999887554332 2222 223322222222233456677788899987 555433
No 31
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.93 E-value=4e-23 Score=189.86 Aligned_cols=222 Identities=23% Similarity=0.369 Sum_probs=160.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc-CCCC---ceeeEchhHHHHHHHcCCc--HHHHhccccc-cc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL-RTGG---TSLTLFKNGWSVLDALGVG--SDLRSQFLEI-KG 128 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~-~~~g---~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~-~~ 128 (300)
....+|+|||||++||++|+.|+++|++|+|+||.+.. ...| .++.+.+++++.|+.+|++ +++....... ..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 35689999999999999999999999999999998632 2222 5688999999999999853 4444433221 11
Q ss_pred e-EEEc-CCCceEEEecCCC--CCCC-cceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEc
Q 022277 129 M-AVKS-EDGRELRSFGFKD--EDAS-QEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYA 203 (300)
Q Consensus 129 ~-~~~~-~~~~~~~~~~~~~--~~~~-~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~a 203 (300)
+ .+.+ ..+.....++... ...+ .....+.|..|.+.|.+.+....++++++|++++.+++++. |.+.+|+++.+
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~Vt-V~~~dG~ti~a 237 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVT-VVLENGQRYEG 237 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEE-EEECCCCEEEc
Confidence 2 1222 2344333333211 1111 23457899999999998885445788999999998877744 88999988999
Q ss_pred CEEEEcCCCChHhhhhc-CCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277 204 NIVIGCDGIRSPIAKWI-GFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP 278 (300)
Q Consensus 204 d~vV~A~G~~s~~r~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 278 (300)
|+||+|||.+|.+|+.+ +...+.+.++.+|++.++.............+.+.+.++.++|.++++++|+..+..+
T Consensus 238 DlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p 313 (668)
T PLN02927 238 DLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEP 313 (668)
T ss_pred CEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECC
Confidence 99999999999999998 7667888999999988876432211223445667788887888888888776655543
No 32
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.93 E-value=6.5e-24 Score=185.98 Aligned_cols=218 Identities=22% Similarity=0.294 Sum_probs=146.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhcccccc--ceEEEcC-C
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIK--GMAVKSE-D 135 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~~-~ 135 (300)
+||+|||||++|+++|+.|+++|++|+||||.+.+...+++..+.+++.++|+++|+++.+........ ...+... .
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 699999999999999999999999999999999988888999999999999999999998887664333 2222222 1
Q ss_pred Cce------EEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc---CC--cEEE
Q 022277 136 GRE------LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV---NG--TRIY 202 (300)
Q Consensus 136 ~~~------~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~ 202 (300)
+.. .....+...........+.|..+.+.|.+.+ .++++++++++++++.+++++. +.+. +| ++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~-~~~~~~~~g~~~~i~ 160 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVT-VVVRDGEDGEEETIE 160 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEE-EEEEETCTCEEEEEE
T ss_pred CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccc-cccccccCCceeEEE
Confidence 111 1111111123345567789999999998876 4799999999999998888744 3332 23 2689
Q ss_pred cCEEEEcCCCChHhhhhcCCCCCccccc--eEEEEE-eeCCCCCCCCCceEEEEeCCeEEEEEEcCC-CeEEEEEEEcC
Q 022277 203 ANIVIGCDGIRSPIAKWIGFSEPKYVGH--CAYRGL-GYYPNGQPFEPKLNYIYGRGVRAGYVPVSP-TKVYWFICHNN 277 (300)
Q Consensus 203 ad~vV~A~G~~s~~r~~~g~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~ 277 (300)
||+||+|||.+|.+|+.++...+..... ..+..+ .+.....+......+.......++++|..+ +...+++.+..
T Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 239 (356)
T PF01494_consen 161 ADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPF 239 (356)
T ss_dssp ESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEET
T ss_pred EeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEEEeeec
Confidence 9999999999999999998664433322 222221 222112122232333444566667999988 44444444443
No 33
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.92 E-value=1.6e-23 Score=186.41 Aligned_cols=216 Identities=19% Similarity=0.241 Sum_probs=150.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCc-----CCCCceeeEchhHHHHHHHcCCcHHHHhccccccc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSL-----RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKG 128 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~-----~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 128 (300)
..+||+|||||++|+++|+.|+++ |++|+|+||.... ...+++..+.+.+.+.++++|+++.+.........
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence 568999999999999999999998 9999999995321 12356888999999999999999998876665555
Q ss_pred eEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCE
Q 022277 129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANI 205 (300)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~ 205 (300)
+.+..........+...........+.+.+..+.+.|.+.+ ++++++++++|+++..++++ +.|.+.+|..+.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~ 160 (395)
T PRK05732 82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS-VRVTLDDGETLTGRL 160 (395)
T ss_pred EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCE
Confidence 55443322211111111111122235677888877777654 47899999999999877776 448888888899999
Q ss_pred EEEcCCCChHhhhhcCCCCCcc-ccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022277 206 VIGCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH 275 (300)
Q Consensus 206 vV~A~G~~s~~r~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 275 (300)
||+|+|.+|.+|+.+++..+.. .++..+...+.... +........+.+++.++++|.++++..+++.+
T Consensus 161 vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~ 229 (395)
T PRK05732 161 LVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSE--AHQGRAFERFTEHGPLALLPMSDGRCSLVWCH 229 (395)
T ss_pred EEEecCCChhhHHhhCCCccceecCCEEEEEEEEecC--CCCCEEEEeecCCCCEEEeECCCCCeEEEEEC
Confidence 9999999999999997664333 34555544443321 11111222334555677899999987654443
No 34
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.92 E-value=6.3e-23 Score=181.67 Aligned_cols=208 Identities=23% Similarity=0.291 Sum_probs=140.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc--CC----CCceeeEchhHHHHHHHcCCcHHHHhc-cccccceE
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL--RT----GGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMA 130 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~--~~----~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~ 130 (300)
.+||+|||||++|+++|+.|++.|++|+|+|+.+.. .. +.+...+.++++++|+++|+++.+... ..+...+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 479999999999999999999999999999987522 11 224568999999999999999988653 34444444
Q ss_pred EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277 131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207 (300)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV 207 (300)
.+...... ..+...........+.+.+..+...|.+.+ ++++++++++|++++.+++++ .|++.+|.+++||+||
T Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~-~v~~~~g~~~~~~lvI 160 (384)
T PRK08849 83 TWEHPECR-TRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGN-RVTLESGAEIEAKWVI 160 (384)
T ss_pred EEeCCCce-EEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeE-EEEECCCCEEEeeEEE
Confidence 44322211 122211111122235566667777776654 578999999999999887774 4899999999999999
Q ss_pred EcCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCC-ceEEEEeCCeEEEEEEcCCCeEE
Q 022277 208 GCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEP-KLNYIYGRGVRAGYVPVSPTKVY 270 (300)
Q Consensus 208 ~A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~ 270 (300)
+|||.+|.+|+.+|+...... .+.+.. ++.....+... .+..+...+... ++|++++...
T Consensus 161 gADG~~S~vR~~~gi~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~g~~~-~~pl~~~~~~ 222 (384)
T PRK08849 161 GADGANSQVRQLAGIGITAWDYRQHCML--INVETEQPQQDITWQQFTPSGPRS-FLPLCGNQGS 222 (384)
T ss_pred EecCCCchhHHhcCCCceeccCCCeEEE--EEEEcCCCCCCEEEEEeCCCCCEE-EeEcCCCceE
Confidence 999999999999987643332 222222 22222222222 233343334443 5899876543
No 35
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.92 E-value=6.4e-23 Score=190.85 Aligned_cols=212 Identities=19% Similarity=0.213 Sum_probs=150.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
..+||+||||||+||++|+.|++. |++|+|||+.+.+...|++.+++++++++|+++|+++.+.+.......+.++...
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 478999999999999999999995 9999999999888778999999999999999999999998877777777766643
Q ss_pred Cc---eEEEe----cCCCCCCCcceeeecHHHHHHHHHhcCC--C--CeEEeCCeEEEEEEcCC--ceEEEEEc------
Q 022277 136 GR---ELRSF----GFKDEDASQEVRAVERRILLETLANQLP--P--ESVQFSSELAKIETSGN--GVTILELV------ 196 (300)
Q Consensus 136 ~~---~~~~~----~~~~~~~~~~~~~i~~~~l~~~l~~~~~--g--~~i~~~~~v~~i~~~~~--~~~~v~~~------ 196 (300)
+. .+... .............+++..+.+.|.+.+. + +.+++++++++++.+++ ..+.|++.
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 32 11110 1111111233456788888888887662 3 57889999999987643 22346664
Q ss_pred CC--cEEEcCEEEEcCCCChHhhhhcCCCCCccccceEEEEEeeCC--CCCCCCC-ceEEEEeCCeEEEEEEcCCCeE
Q 022277 197 NG--TRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYP--NGQPFEP-KLNYIYGRGVRAGYVPVSPTKV 269 (300)
Q Consensus 197 ~g--~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~ 269 (300)
+| ++++||+||+|||++|.+|+.+|+..........| ++++.. ...+... ...+..+.++.+.++|++++..
T Consensus 191 ~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~-~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~ 267 (634)
T PRK08294 191 EGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAW-GVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYL 267 (634)
T ss_pred CCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceE-EEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeE
Confidence 34 47999999999999999999998876554333323 233321 1212111 1223335677888999998864
No 36
>PLN02985 squalene monooxygenase
Probab=99.92 E-value=1.2e-22 Score=184.75 Aligned_cols=218 Identities=20% Similarity=0.201 Sum_probs=153.5
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhc-cccccceEEEc
Q 022277 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMAVKS 133 (300)
Q Consensus 55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~ 133 (300)
....+||+|||||++|+++|+.|++.|++|+|+||.......+.+..+.+++.+.|+++|+++.+... .....++.++.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~ 119 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK 119 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE
Confidence 34578999999999999999999999999999999876555667888999999999999999887653 34455555554
Q ss_pred CCCceEEEecCCCCC----CCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEE--cCCc--EEE
Q 022277 134 EDGRELRSFGFKDED----ASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILEL--VNGT--RIY 202 (300)
Q Consensus 134 ~~~~~~~~~~~~~~~----~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~--~~g~--~~~ 202 (300)
++... ..++.... .......+++..+.+.|.+.+ ++++++.+ +++++..+++.+.+|++ .+|+ ++.
T Consensus 120 -~g~~~-~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~ 196 (514)
T PLN02985 120 -DGKEA-VAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTAL 196 (514)
T ss_pred -CCEEE-EEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEE
Confidence 33322 22332111 112345788899999988766 46888765 57777666554444554 4564 467
Q ss_pred cCEEEEcCCCChHhhhhcCCCCCc-cccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277 203 ANIVIGCDGIRSPIAKWIGFSEPK-YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP 278 (300)
Q Consensus 203 ad~vV~A~G~~s~~r~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 278 (300)
||+||+|||.+|.+|+.++...+. +++...+. ......+.++...++++++.+++++|++++++++++....+
T Consensus 197 AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~ 270 (514)
T PLN02985 197 APLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI---SKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPD 270 (514)
T ss_pred CCEEEECCCCchHHHHHhccCCCcceeEeEEEE---EccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCC
Confidence 999999999999999999765442 33333332 11112233344566778888999999999998777666543
No 37
>PRK06126 hypothetical protein; Provisional
Probab=99.92 E-value=1.3e-22 Score=187.41 Aligned_cols=218 Identities=22% Similarity=0.346 Sum_probs=151.3
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccc----cceE
Q 022277 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEI----KGMA 130 (300)
Q Consensus 55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~ 130 (300)
....+||+|||||++||++|+.|+++|++|+|+||.+.+...+++..+.++++++|+++|+.+.+.+...+. ....
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~ 83 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAY 83 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceE
Confidence 346789999999999999999999999999999999888778889999999999999999999887765432 1122
Q ss_pred EEcCCCceEEEecCCCC--------------CCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEE
Q 022277 131 VKSEDGRELRSFGFKDE--------------DASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTIL 193 (300)
Q Consensus 131 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v 193 (300)
.....|..+..+.+... ..+.....+.+..+.+.|.+.+ ++++|+++++|++++.+++++. +
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v 162 (545)
T PRK06126 84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-A 162 (545)
T ss_pred EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-E
Confidence 23334555544443211 1122345678888888887765 4789999999999998877644 5
Q ss_pred EEc---CCc--EEEcCEEEEcCCCChHhhhhcCCCCCccccc-eEEEEEeeCCC---CCCCC-CceEEEEeCCeEEEEEE
Q 022277 194 ELV---NGT--RIYANIVIGCDGIRSPIAKWIGFSEPKYVGH-CAYRGLGYYPN---GQPFE-PKLNYIYGRGVRAGYVP 263 (300)
Q Consensus 194 ~~~---~g~--~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~~-~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~p 263 (300)
.+. +|+ ++.+|+||+|||++|.+|+.+|+........ ..+......+. ..+.. ....++++++.+..++|
T Consensus 163 ~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~ 242 (545)
T PRK06126 163 TVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVA 242 (545)
T ss_pred EEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEE
Confidence 443 353 6899999999999999999998764433211 11222222211 11112 22344456666767778
Q ss_pred cCCCeEEEEE
Q 022277 264 VSPTKVYWFI 273 (300)
Q Consensus 264 ~~~~~~~~~~ 273 (300)
.+++..+++.
T Consensus 243 ~~~~~~~~~~ 252 (545)
T PRK06126 243 IDGRDEWLFH 252 (545)
T ss_pred ECCCCeEEEE
Confidence 7766554444
No 38
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.92 E-value=1.2e-22 Score=180.29 Aligned_cols=213 Identities=19% Similarity=0.274 Sum_probs=150.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCC-----ceeeEchhHHHHHHHcCCcHHHHh-ccccccceE
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG-----TSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMA 130 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g-----~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~ 130 (300)
+.+||+|||||++|+++|+.|++.|++|+|+||.+.+...+ +...+.+++.++|+.+|+++.+.. ...+...+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 46899999999999999999999999999999998765422 447899999999999999888753 233444555
Q ss_pred EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CC-CeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277 131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PP-ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207 (300)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g-~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV 207 (300)
+.......+. +.......+...+.+++..+.+.|.+.+ .+ ++++ +++|++++.++++ +.|.+.+|.++.||+||
T Consensus 84 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI 160 (388)
T PRK07608 84 VFGDAHARLH-FSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA-ATLTLADGQVLRADLVV 160 (388)
T ss_pred EEECCCceeE-eeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-EEEEECCCCEEEeeEEE
Confidence 5543322221 1111112233345688999999987766 24 7788 9999999877776 45888888889999999
Q ss_pred EcCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEE
Q 022277 208 GCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFIC 274 (300)
Q Consensus 208 ~A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 274 (300)
+|+|.+|.+|+.+|...+... ...++. +.++...+.......+++++++++++|++++++.+++.
T Consensus 161 ~adG~~S~vr~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 226 (388)
T PRK07608 161 GADGAHSWVRSQAGIKAERRPYRQTGVV--ANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWS 226 (388)
T ss_pred EeCCCCchHHHhcCCCccccccCCEEEE--EEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEE
Confidence 999999999999987644322 222332 22222223333344556788888899999997765443
No 39
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.92 E-value=1.7e-22 Score=179.44 Aligned_cols=214 Identities=19% Similarity=0.271 Sum_probs=144.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--CCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~--~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
.+||+||||||+|+++|+.|++.|++|+|+||.+... ...++..+.+++.++|+++|+++.+.........+.++..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~- 80 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD- 80 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC-
Confidence 5799999999999999999999999999999998632 2234556899999999999999999887777677776653
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEE-cCCceEEEEE-cCCc--EEEcCEEEEc
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIET-SGNGVTILEL-VNGT--RIYANIVIGC 209 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~-~~~~~~~v~~-~~g~--~~~ad~vV~A 209 (300)
+. ...+++.....+.....+.+..+.+.|.+.+ .|+++++++++++++. +++. ..|++ .+|+ +++||+||+|
T Consensus 81 g~-~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgA 158 (392)
T PRK08243 81 GR-RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGC 158 (392)
T ss_pred CE-EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEEC
Confidence 33 3344444333233444556777777776554 4889999999999987 4444 34666 4664 6899999999
Q ss_pred CCCChHhhhhcCCCC-Cccccc--eEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022277 210 DGIRSPIAKWIGFSE-PKYVGH--CAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN 276 (300)
Q Consensus 210 ~G~~s~~r~~~g~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 276 (300)
||.+|.+|+.++... ..+.+. ..|.+... + ..+......+...+..+.++.|.+++...+++.+.
T Consensus 159 DG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (392)
T PRK08243 159 DGFHGVSRASIPAGALRTFERVYPFGWLGILA-E-APPVSDELIYANHERGFALCSMRSPTRSRYYLQCP 226 (392)
T ss_pred CCCCCchhhhcCcchhhceecccCceEEEEeC-C-CCCCCCceEEeeCCCceEEEecCCCCcEEEEEEec
Confidence 999999999996543 222222 23332221 1 11222222223345566656666665555444443
No 40
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.91 E-value=5.3e-22 Score=169.61 Aligned_cols=209 Identities=21% Similarity=0.203 Sum_probs=142.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 138 (300)
+||+|||||++|+++|+.|++.|++|+|+||...+....++..+.++.++.+...+.. .........+....+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~ 75 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-----IVNLVRGARFFSPNGDS 75 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-----hhhheeeEEEEcCCCcE
Confidence 6999999999999999999999999999999987765556667777777766554321 11112233444444433
Q ss_pred EEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcC-CcEEEcCEEEEcCCCChH
Q 022277 139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN-GTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~-g~~~~ad~vV~A~G~~s~ 215 (300)
+. ... .......++|.++.+.|.+.+ .|++++++++|+++..+++++. +.+.+ +.++++|+||+|+|.+|.
T Consensus 76 ~~-~~~----~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 76 VE-IPI----ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVV-VIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred EE-ecc----CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEE-EEEcCccEEEEeCEEEECCCcchH
Confidence 21 111 133456789999999988877 4799999999999988877643 55443 357999999999999999
Q ss_pred hhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEe----CCeEEEEEEcCCCeEEEEEEEcCC
Q 022277 216 IAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYG----RGVRAGYVPVSPTKVYWFICHNNP 278 (300)
Q Consensus 216 ~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~ 278 (300)
+++.+++.........+++.....+..........++++ .+.+.|++|+++++..+.++...+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~ 216 (295)
T TIGR02032 150 VAKKLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSA 216 (295)
T ss_pred HHHhcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccC
Confidence 999887654222222334333443322222233444443 357899999999987766655543
No 41
>PRK06996 hypothetical protein; Provisional
Probab=99.91 E-value=3.4e-22 Score=177.80 Aligned_cols=218 Identities=19% Similarity=0.159 Sum_probs=150.1
Q ss_pred ccCCCCcEEEECCCHHHHHHHHHHHHcC----CcEEEEecCCCcC--CCCceeeEchhHHHHHHHcCCcHHHHhcccccc
Q 022277 54 ADVRKEDIVIVGAGIAGLATAVSLQRLG----IGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIK 127 (300)
Q Consensus 54 ~~~~~~dVvIIGgG~aGl~~A~~L~~~G----~~V~viE~~~~~~--~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 127 (300)
+....+||+||||||+|+++|+.|++.| ++|+|+|+.+... ...++..+.+.+.++|+++|+++. ...+..
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~---~~~~~~ 83 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIE 83 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh---cCCccc
Confidence 3446789999999999999999999987 4799999986443 244789999999999999999886 233444
Q ss_pred ceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC---cEEE
Q 022277 128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG---TRIY 202 (300)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g---~~~~ 202 (300)
.+.+..........+.......+...+.+++..+.+.|.+.+ .++++++++++++++.++++ +.+.+.++ ++++
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v~v~~~~~~g~~~i~ 162 (398)
T PRK06996 84 HIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-VTLALGTPQGARTLR 162 (398)
T ss_pred EEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-EEEEECCCCcceEEe
Confidence 454443221111122222222233456789999999998877 36889999999999888777 44777754 5899
Q ss_pred cCEEEEcCCC-ChHhhhhcCCCC-CccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeE--EEEEEEcC
Q 022277 203 ANIVIGCDGI-RSPIAKWIGFSE-PKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKV--YWFICHNN 277 (300)
Q Consensus 203 ad~vV~A~G~-~s~~r~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~ 277 (300)
||+||+|||. +|.+|+.+++.. +..+++.++.+.++.+. +.+......+.+.+++.++|++++.. ++++++..
T Consensus 163 a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~ 239 (398)
T PRK06996 163 ARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSA--PRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCA 239 (398)
T ss_pred eeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccC--CCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECC
Confidence 9999999996 577888886653 44456667766555432 33322222334555677889987652 34444443
No 42
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.91 E-value=6.9e-22 Score=175.65 Aligned_cols=215 Identities=21% Similarity=0.294 Sum_probs=146.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC------CCCceeeEchhHHHHHHHcCCcHHHHhc-cccccce
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR------TGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGM 129 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~------~~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~ 129 (300)
..+||+|||||++|+++|+.|++.|++|+|+|+.+... ...+...+.+.+.+.|+.+|+++.+... ..+...+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 56899999999999999999999999999999986432 1235578899999999999999887653 2333333
Q ss_pred EEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEE
Q 022277 130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV 206 (300)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v 206 (300)
..+......+ .+.......+...+.+++..+.+.|.+.+ ++++++++++|+++..++++ +.|.+.+|++++||+|
T Consensus 84 ~~~~~~~~~~-~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~v 161 (391)
T PRK08020 84 ETWEWETAHV-VFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG-WELTLADGEEIQAKLV 161 (391)
T ss_pred EEEeCCCCeE-EecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-EEEEECCCCEEEeCEE
Confidence 3333222221 12211111233345788999988887765 48899999999999887776 5588888888999999
Q ss_pred EEcCCCChHhhhhcCCCCC--ccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277 207 IGCDGIRSPIAKWIGFSEP--KYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277 (300)
Q Consensus 207 V~A~G~~s~~r~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 277 (300)
|+|+|.+|.+|+.+++... .|. +.++...+..+.. +....+..+...+.. .++|+.++... ++++..
T Consensus 162 I~AdG~~S~vR~~~~~~~~~~~y~-~~~~~~~~~~~~~-~~~~~~~~~~~~g~~-~~~p~~~~~~~-~v~~~~ 230 (391)
T PRK08020 162 IGADGANSQVRQMAGIGVHGWQYR-QSCMLISVKCENP-PGDSTWQQFTPSGPR-AFLPLFDNWAS-LVWYDS 230 (391)
T ss_pred EEeCCCCchhHHHcCCCccccCCC-ceEEEEEEEecCC-CCCEEEEEEcCCCCE-EEeECCCCcEE-EEEECC
Confidence 9999999999999976533 333 3334334443321 222233444444444 47899877544 344443
No 43
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.90 E-value=1.5e-21 Score=180.38 Aligned_cols=212 Identities=21% Similarity=0.321 Sum_probs=146.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
+..+||+||||||+||++|+.|++.|++|+|+||.+.+...+++..+.++++++|+++|+.+.+............+..+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD 100 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC
Confidence 36789999999999999999999999999999999988778899999999999999999999887765544333333322
Q ss_pred CceEEEecCCCC--CCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEE--cCCc-EEEcCEEE
Q 022277 136 GRELRSFGFKDE--DASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILEL--VNGT-RIYANIVI 207 (300)
Q Consensus 136 ~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~--~~g~-~~~ad~vV 207 (300)
.....+..... ........+.+..+.+.|.+.+ ++++++++++|++++.+++++. +.+ .+|. ++++|+||
T Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~i~ad~vV 178 (547)
T PRK08132 101 -EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVETPDGPYTLEADWVI 178 (547)
T ss_pred -CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEECCCCcEEEEeCEEE
Confidence 23333332211 1122344577888888887755 4689999999999998877643 444 3454 69999999
Q ss_pred EcCCCChHhhhhcCCCCCcccc-ceEEEEEeeCCCCCCCCCceEEEE----eCCeEEEEEEcCCCeEEE
Q 022277 208 GCDGIRSPIAKWIGFSEPKYVG-HCAYRGLGYYPNGQPFEPKLNYIY----GRGVRAGYVPVSPTKVYW 271 (300)
Q Consensus 208 ~A~G~~s~~r~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~ 271 (300)
+|||.+|.+|+.+|+....... ...+...+..... +......++ .++..+++.|.+++.+.+
T Consensus 179 gADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (547)
T PRK08132 179 ACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKAD--FPTERWFWFDPPFHPGQSVLLHRQPDNVWRI 245 (547)
T ss_pred ECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCC--CCCeeeEEEeccCCCCcEEEEEeCCCCeEEE
Confidence 9999999999999876544321 1112111222222 222222333 345566677777765543
No 44
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.90 E-value=1.5e-21 Score=172.94 Aligned_cols=213 Identities=14% Similarity=0.216 Sum_probs=140.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--CCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~--~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
.+||+|||||++|+++|+.|+++|++|+|+||.+... ...++..+.++++++|+++|+++.+.........+.+....
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 4799999999999999999999999999999998632 22234458899999999999999998877666666665432
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEE-cCCceEEEEEc-CCc--EEEcCEEEEc
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIET-SGNGVTILELV-NGT--RIYANIVIGC 209 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~-~~~~~~~v~~~-~g~--~~~ad~vV~A 209 (300)
....+++.............+..+.+.|.+.+ .++.++++++++.+.. +++. ..|++. +|+ +++||+||+|
T Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGA 158 (390)
T TIGR02360 82 --QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGC 158 (390)
T ss_pred --EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEEC
Confidence 23334443322222222334566667776655 3778999998888865 3344 346775 675 6899999999
Q ss_pred CCCChHhhhhcCCCC-Cccccc--eEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeE-EEEEEEc
Q 022277 210 DGIRSPIAKWIGFSE-PKYVGH--CAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKV-YWFICHN 276 (300)
Q Consensus 210 ~G~~s~~r~~~g~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~ 276 (300)
||.+|.+|+.++... +.+.++ ..|+++..... +.... .++.+.+..+.++|+.++.. +|++.+.
T Consensus 159 DG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (390)
T TIGR02360 159 DGFHGVSRASIPAEVLKEFERVYPFGWLGILSETP--PVSHE-LIYSNHERGFALCSMRSATRSRYYVQVP 226 (390)
T ss_pred CCCchhhHHhcCcccceeeeccCCcceEEEecCCC--CCCCc-eEEEeCCCceEEEeccCCCcceEEEEcC
Confidence 999999999985443 333333 24544332211 11111 24455566666778764433 3444443
No 45
>PRK06834 hypothetical protein; Provisional
Probab=99.90 E-value=1.5e-21 Score=177.02 Aligned_cols=204 Identities=20% Similarity=0.206 Sum_probs=140.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-CCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~-~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
..+||+||||||+|+++|+.|+++|++|+|+||.+.+. ...++..++++++++|+.+|+++.+...........+
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~---- 77 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGF---- 77 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCcccccee----
Confidence 35899999999999999999999999999999998754 3457888999999999999999988764433221111
Q ss_pred CceEEEecCCCCCC-CcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277 136 GRELRSFGFKDEDA-SQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (300)
Q Consensus 136 ~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (300)
....+++..... ......+.+..+.+.|.+.+ .+++++++++|++++++++++ .|++.+|+++++|+||+|||.
T Consensus 78 --~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v-~v~~~~g~~i~a~~vVgADG~ 154 (488)
T PRK06834 78 --AATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGV-DVELSDGRTLRAQYLVGCDGG 154 (488)
T ss_pred --eeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeE-EEEECCCCEEEeCEEEEecCC
Confidence 001111111111 12234567778888887766 378999999999999988774 477888888999999999999
Q ss_pred ChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcC-CCeEE
Q 022277 213 RSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVS-PTKVY 270 (300)
Q Consensus 213 ~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~ 270 (300)
+|.+|+.+|+..+.......+ .++++....+.. +.....+.+...+.|.. ++..+
T Consensus 155 ~S~vR~~lgi~~~g~~~~~~~-~~~dv~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ 210 (488)
T PRK06834 155 RSLVRKAAGIDFPGWDPTTSY-LIAEVEMTEEPE--WGVHRDALGIHAFGRLEDEGPVR 210 (488)
T ss_pred CCCcHhhcCCCCCCCCcceEE-EEEEEEecCCCC--cceeeCCCceEEEeccCCCCeEE
Confidence 999999999877655432211 223332221111 11233444455567776 55444
No 46
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.89 E-value=7.2e-21 Score=168.88 Aligned_cols=210 Identities=19% Similarity=0.143 Sum_probs=140.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCce-eeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS-LTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
+.+||+||||||||++||+.|++.|++|+|+||...++....+ ..+.+..++.+....... .........++...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~----i~~~v~~~~~~~~~ 77 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE----IERKVTGARIYFPG 77 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh----hheeeeeeEEEecC
Confidence 5799999999999999999999999999999999988654433 445554443332111100 11222222232221
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (300)
.......+ ....+.++|..+.++|++.+ .|++++.+++++++..++++++.+...++.+++|++||+|+|.+
T Consensus 78 ~~~~~~~~------~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 78 EKVAIEVP------VGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred CceEEecC------CCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 11111111 14477899999999998777 48999999999999999888664555555689999999999999
Q ss_pred hHhhhhcCCCCCc-cccceEEEEEeeCCCCCCCCCceEEE-----EeCCeEEEEEEcCCCeEEEEEEEcCCC
Q 022277 214 SPIAKWIGFSEPK-YVGHCAYRGLGYYPNGQPFEPKLNYI-----YGRGVRAGYVPVSPTKVYWFICHNNPT 279 (300)
Q Consensus 214 s~~r~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~ 279 (300)
|.+++.+|..... ....++..-....+ .......++ ..++++.|+||..++.+.+.+.+....
T Consensus 152 s~l~~~lg~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~ 220 (396)
T COG0644 152 SALARKLGLKDRKPEDYAIGVKEVIEVP---DDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD 220 (396)
T ss_pred hHHHHHhCCCCCChhheeEEeEEEEecC---CCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC
Confidence 9999999877211 11122222223333 111222222 335899999999999998888866654
No 47
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.88 E-value=1.8e-20 Score=167.94 Aligned_cols=208 Identities=18% Similarity=0.221 Sum_probs=133.2
Q ss_pred ccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277 54 ADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS 133 (300)
Q Consensus 54 ~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 133 (300)
+....+||+||||||+|+++|+.|+++|++|+|+||.... ...++..+. ...++.+++++.+.. .....+.+..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~-~k~cgg~i~---~~~l~~lgl~~~~~~--~~i~~~~~~~ 108 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDN-AKPCGGAIP---LCMVGEFDLPLDIID--RKVTKMKMIS 108 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-CCCcccccc---HhHHhhhcCcHHHHH--HHhhhheEec
Confidence 4456799999999999999999999999999999998642 222333333 356677888766544 2334455555
Q ss_pred CCCceEEEecCCCC-CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcC--CceEEEEEcC-------C--c
Q 022277 134 EDGRELRSFGFKDE-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSG--NGVTILELVN-------G--T 199 (300)
Q Consensus 134 ~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~--~~~~~v~~~~-------g--~ 199 (300)
+.+..+ .+... ........++|..|.+.|.+.+ .|++++.+ ++++++... +..+.|.+.+ | .
T Consensus 109 p~~~~v---~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~ 184 (450)
T PLN00093 109 PSNVAV---DIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPK 184 (450)
T ss_pred CCceEE---EecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCcc
Confidence 444322 22111 1123344689999999998776 58888765 577776532 2233455432 3 4
Q ss_pred EEEcCEEEEcCCCChHhhhhcCCCCCccccceEEEEEeeCCCC--CCCCCceEEEEe----CCeEEEEEEcCCCeEEEEE
Q 022277 200 RIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNG--QPFEPKLNYIYG----RGVRAGYVPVSPTKVYWFI 273 (300)
Q Consensus 200 ~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~ 273 (300)
+++||+||+|||.+|.+++.+|..... ...++......+.. ........++++ +++|.|++|..+ .+.+.+
T Consensus 185 ~v~a~~VIgADG~~S~vrr~lg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~VG~ 261 (450)
T PLN00093 185 TLEVDAVIGADGANSRVAKDIDAGDYD--YAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGT 261 (450)
T ss_pred EEEeCEEEEcCCcchHHHHHhCCCCcc--eeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCC-cEEEEE
Confidence 799999999999999999999865322 22333333333321 112234455555 467999999995 455555
Q ss_pred E
Q 022277 274 C 274 (300)
Q Consensus 274 ~ 274 (300)
.
T Consensus 262 g 262 (450)
T PLN00093 262 G 262 (450)
T ss_pred E
Confidence 3
No 48
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.86 E-value=1.9e-20 Score=156.38 Aligned_cols=224 Identities=19% Similarity=0.195 Sum_probs=171.6
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHh-ccccccceEEEc
Q 022277 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMAVKS 133 (300)
Q Consensus 55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~ 133 (300)
.....||+|||||.+|.++|+.|+|.|-+|+|+||+-.-...--+.-++|.+...|.++|+.+.+.. ..+...++.++.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk 121 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK 121 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe
Confidence 3467899999999999999999999999999999987655555567788888999999999988876 455666777666
Q ss_pred CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcC--Cc--EEEcCEE
Q 022277 134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVN--GT--RIYANIV 206 (300)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~--g~--~~~ad~v 206 (300)
...+....++.......+.....+...+.+.|.+++ +++++..+ .|.++.++++-+.+|+.++ |+ +..|-+-
T Consensus 122 ~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkGV~yk~k~gee~~~~ApLT 200 (509)
T KOG1298|consen 122 DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLT 200 (509)
T ss_pred CCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEeEEEecCCCceEEEecceE
Confidence 444433444444444555566777888999888877 67777765 4667766666666777764 33 5678999
Q ss_pred EEcCCCChHhhhhcCC-CCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCCCCC
Q 022277 207 IGCDGIRSPIAKWIGF-SEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPG 281 (300)
Q Consensus 207 V~A~G~~s~~r~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 281 (300)
|+|||..|.+|+.+-. +.+.. .+.|.|.+-.....+.++..++++++--.+++||++..+++..+-+..+.-+
T Consensus 201 vVCDGcfSnlRrsL~~~~v~~V--~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~P 274 (509)
T KOG1298|consen 201 VVCDGCFSNLRRSLCDPKVEEV--PSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLP 274 (509)
T ss_pred EEecchhHHHHHHhcCCccccc--chheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCC
Confidence 9999999999999943 23322 3346677777777788888999999999999999999999998888875433
No 49
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.86 E-value=2e-19 Score=159.52 Aligned_cols=202 Identities=20% Similarity=0.316 Sum_probs=131.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~-~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
+||+||||||+|+++|+.|++.|++|+|+|+. +.+.. ++..+.+ ..++.+++.+.+... ...+..+..+++.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~--cg~~i~~---~~l~~l~i~~~~~~~--~~~~~~~~~~~~~ 73 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKP--CGGAIPP---CLIEEFDIPDSLIDR--RVTQMRMISPSRV 73 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCc--CcCCcCH---hhhhhcCCchHHHhh--hcceeEEEcCCCc
Confidence 69999999999999999999999999999998 43322 3333443 457778887766542 3455666665553
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcC------C--cEEEcCEEE
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN------G--TRIYANIVI 207 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~------g--~~~~ad~vV 207 (300)
.+. ..... .......++|..|.+.|.+.+ .|++++.+ +|+++..+++. +.|.+.+ | .+++||+||
T Consensus 74 ~~~-~~~~~--~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~~v~~~~~~~~~~~~~~~i~a~~VI 148 (388)
T TIGR02023 74 PIK-VTIPS--EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-VTLTYRTPKKGAGGEKGSVEADVVI 148 (388)
T ss_pred eee-eccCC--CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-EEEEEEeccccCCCcceEEEeCEEE
Confidence 321 11111 111223589999999998776 48888755 69999877765 4466553 2 369999999
Q ss_pred EcCCCChHhhhhcCCCCCccccceEEEEEeeCCCC-CCC-CCceEEEE----eCCeEEEEEEcCCCeEEEEEE
Q 022277 208 GCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNG-QPF-EPKLNYIY----GRGVRAGYVPVSPTKVYWFIC 274 (300)
Q Consensus 208 ~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~ 274 (300)
+|||.+|.+++.+|...+.. ...++......+.. ..+ ++...+++ .++.+.|++|..+ ...+.+.
T Consensus 149 ~AdG~~S~v~r~lg~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~~~vg~~ 219 (388)
T TIGR02023 149 GADGANSPVAKELGLPKNLP-RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-HIAVGTG 219 (388)
T ss_pred ECCCCCcHHHHHcCCCCCCc-EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-eeEEeEE
Confidence 99999999999998763321 12234333322221 112 22333443 3567999999985 4544443
No 50
>PRK11445 putative oxidoreductase; Provisional
Probab=99.85 E-value=4e-19 Score=155.40 Aligned_cols=194 Identities=15% Similarity=0.112 Sum_probs=126.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC----CCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT----GGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~----~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 134 (300)
+||+||||||+|+++|+.|++. ++|+|+||.+.... ..++..+++++.+.|+++|++......... .
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-~------- 72 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-Q------- 72 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-c-------
Confidence 7999999999999999999999 99999999986532 235678999999999999986321110000 0
Q ss_pred CCceEEEecCCC---CCCCcceeeecHHHHHHHHHhcC-CCCeEEeCCeEEEEEEcCCceEEEEE-cCCc--EEEcCEEE
Q 022277 135 DGRELRSFGFKD---EDASQEVRAVERRILLETLANQL-PPESVQFSSELAKIETSGNGVTILEL-VNGT--RIYANIVI 207 (300)
Q Consensus 135 ~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~l~~~~-~g~~i~~~~~v~~i~~~~~~~~~v~~-~~g~--~~~ad~vV 207 (300)
........... ......+..++|.++.+.|.+.. .++++++++.+++++.++++ +.|.+ .+|+ +++||+||
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~-~~v~~~~~g~~~~i~a~~vV 150 (351)
T PRK11445 73 -IFAVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDG-YHVIFRADGWEQHITARYLV 150 (351)
T ss_pred -cceeeEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE-EEEEEecCCcEEEEEeCEEE
Confidence 00011111111 01122345699999999888755 57899999999999987776 44665 4564 68999999
Q ss_pred EcCCCChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEe---CCeEEEEEEcCCC
Q 022277 208 GCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYG---RGVRAGYVPVSPT 267 (300)
Q Consensus 208 ~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~ 267 (300)
+|||.+|.+|+.++.... ...+.++....... .+.+. ...+++ ...+.|.+|..+.
T Consensus 151 ~AdG~~S~vr~~l~~~~~-~~~~~~~~~~~~~~--~~~~~-~~~~f~~~~~~~~~W~~p~~~~ 209 (351)
T PRK11445 151 GADGANSMVRRHLYPDHQ-IRKYVAIQQWFAEK--HPVPF-YSCIFDNEITDCYSWSISKDGY 209 (351)
T ss_pred ECCCCCcHHhHHhcCCCc-hhhEEEEEEEecCC--CCCCC-cceEEeccCCCceEEEeCCCCc
Confidence 999999999999864422 11222322222222 12121 112222 2567899998653
No 51
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.84 E-value=2e-18 Score=153.24 Aligned_cols=205 Identities=17% Similarity=0.205 Sum_probs=128.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 138 (300)
+||+||||||+|+++|+.|+++|++|+|+||..... ..++..+. ...++++++++.+.. .......+..+.+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~-~~cg~~i~---~~~l~~~g~~~~~~~--~~i~~~~~~~p~~~~ 74 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA-KPCGGAIP---LCMVDEFALPRDIID--RRVTKMKMISPSNIA 74 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC-CCcccccc---HhhHhhccCchhHHH--hhhceeEEecCCceE
Confidence 589999999999999999999999999999986432 22233333 356777888766543 233345555544422
Q ss_pred EEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEc--CCceEEEEE--cC-----C--cEEEcCE
Q 022277 139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETS--GNGVTILEL--VN-----G--TRIYANI 205 (300)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~--~~~~~~v~~--~~-----g--~~~~ad~ 205 (300)
+ .+.... ........++|..|.+.|.+.+ .|++++.++ +++++.. .+..+.|++ .+ | .+++|++
T Consensus 75 ~-~~~~~~-~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~ 151 (398)
T TIGR02028 75 V-DIGRTL-KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDA 151 (398)
T ss_pred E-EeccCC-CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCE
Confidence 2 111111 1122234689999999888877 588998774 7777532 233344543 22 3 3799999
Q ss_pred EEEcCCCChHhhhhcCCCCCccccceEEEEEeeCCCC-CC-CCCceEEEEe----CCeEEEEEEcCCCeEEEEEEE
Q 022277 206 VIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNG-QP-FEPKLNYIYG----RGVRAGYVPVSPTKVYWFICH 275 (300)
Q Consensus 206 vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~ 275 (300)
||+|||.+|.+++.+|.... .....+......+.. .. ......++++ +++|.|++|..+ ...+.+..
T Consensus 152 VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~-~~~VG~g~ 224 (398)
T TIGR02028 152 VIGADGANSRVAKEIDAGDY--SYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGT 224 (398)
T ss_pred EEECCCcchHHHHHhCCCCc--ceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC-eEEEEEEe
Confidence 99999999999999986532 122233322333222 11 2233455554 567999999995 45555543
No 52
>PRK10015 oxidoreductase; Provisional
Probab=99.81 E-value=2.3e-18 Score=154.04 Aligned_cols=165 Identities=24% Similarity=0.282 Sum_probs=104.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCC-ceeeEchhHHHHHHHcCCcHH-HHhccccccceEEEcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG-TSLTLFKNGWSVLDALGVGSD-LRSQFLEIKGMAVKSE 134 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g-~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~ 134 (300)
..+||+||||||+|+++|+.|++.|++|+|+||.+.++... .+..+.....+.+. .++... ..........+.+...
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~-~~~~~~~~i~~~~~~~~~~~~~~ 82 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAII-PGFAASAPVERKVTREKISFLTE 82 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHc-ccccccCCccccccceeEEEEeC
Confidence 46999999999999999999999999999999998764321 12222222222220 011110 0011111122333332
Q ss_pred CCceEEEecCCCC-CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277 135 DGRELRSFGFKDE-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (300)
Q Consensus 135 ~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (300)
++.....+..... ......+.+.|..+.+.|.+++ .|++++.+++|+++..+++++..+.. ++..+.|++||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG 161 (429)
T PRK10015 83 ESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADG 161 (429)
T ss_pred CCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccC
Confidence 2221111111111 1122356788999988887766 48999999999999877666554544 345799999999999
Q ss_pred CChHhhhhcCCC
Q 022277 212 IRSPIAKWIGFS 223 (300)
Q Consensus 212 ~~s~~r~~~g~~ 223 (300)
.+|.+++.+|..
T Consensus 162 ~~s~v~~~lg~~ 173 (429)
T PRK10015 162 VNSMLGRSLGMV 173 (429)
T ss_pred cchhhhcccCCC
Confidence 999999999764
No 53
>PLN02697 lycopene epsilon cyclase
Probab=99.80 E-value=2.4e-17 Score=149.40 Aligned_cols=200 Identities=21% Similarity=0.305 Sum_probs=126.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
..+||+||||||+|+++|..|++.|++|+|+|+...... ..+++. ..++.+++.+.+... ......+..++
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~---n~GvW~---~~l~~lgl~~~i~~~---w~~~~v~~~~~ 177 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVWE---DEFKDLGLEDCIEHV---WRDTIVYLDDD 177 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC---ccccch---hHHHhcCcHHHHHhh---cCCcEEEecCC
Confidence 358999999999999999999999999999998643221 122222 346667765443321 11222222222
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s 214 (300)
.... ....+..++|..|.+.|.+.+ .|+++ ++++|+++..+++++..+.+.+|.++.|++||+|+|.+|
T Consensus 178 ~~~~--------~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 178 KPIM--------IGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ceee--------ccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 2211 123344689999999998877 47887 678999998877764435667788899999999999999
Q ss_pred HhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEe---------------CCeEEEEEEcCCCeEEE-EEEE
Q 022277 215 PIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYG---------------RGVRAGYVPVSPTKVYW-FICH 275 (300)
Q Consensus 215 ~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~-~~~~ 275 (300)
...-.+....+....+.++...++.... +++....++++ ...+.|++|.+++++.+ ...+
T Consensus 249 ~rl~~~~~~~~~~~~Q~a~Gi~ve~~~~-~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l 324 (529)
T PLN02697 249 GRLLQYEVGGPRVCVQTAYGVEVEVENN-PYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCL 324 (529)
T ss_pred hhhhccccCCCCcccEEEEEEEEEecCC-CCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeee
Confidence 3211111112344456666656665432 23322223322 12578999999999887 4444
No 54
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.80 E-value=7.1e-18 Score=151.06 Aligned_cols=168 Identities=23% Similarity=0.277 Sum_probs=106.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCc-eeeEchhHHHHH-HHcCCcHHHHhccccccceEEEcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT-SLTLFKNGWSVL-DALGVGSDLRSQFLEIKGMAVKSE 134 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~-~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~~~ 134 (300)
..+||+||||||+|+++|+.|+++|++|+|+||.+.++.... +..+.....+.+ ..+.....+ ........+.+...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPV-ERLITHEKLAFMTE 82 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcc-cceeeeeeEEEEcC
Confidence 469999999999999999999999999999999987653211 112222222211 111000000 01111112233333
Q ss_pred CCceEEEecCCC-CCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277 135 DGRELRSFGFKD-EDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (300)
Q Consensus 135 ~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (300)
.+.....+.... .......+.+.|.++.+.|.+.+ .|++++.+++|+++..+++.++.+. .+|.++.|++||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~i~A~~VI~A~G 161 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE-cCCcEEECCEEEEEeC
Confidence 332211111111 11123356788999999888876 5899999999999987776654444 4566899999999999
Q ss_pred CChHhhhhcCCCCCc
Q 022277 212 IRSPIAKWIGFSEPK 226 (300)
Q Consensus 212 ~~s~~r~~~g~~~~~ 226 (300)
.+|.+++.+|+..+.
T Consensus 162 ~~s~l~~~lgl~~~~ 176 (428)
T PRK10157 162 VNSILAEKLGMAKRV 176 (428)
T ss_pred CCHHHHHHcCCCCCC
Confidence 999999999876433
No 55
>PLN02463 lycopene beta cyclase
Probab=99.78 E-value=1e-16 Score=143.26 Aligned_cols=197 Identities=21% Similarity=0.324 Sum_probs=125.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
..+||+|||||++|+++|..|++.|++|+|+|+.+.... ...... ..+.++.+++.+.+.... . ...+...++
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~-p~~~g~---w~~~l~~lgl~~~l~~~w-~--~~~v~~~~~ 99 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW-PNNYGV---WVDEFEALGLLDCLDTTW-P--GAVVYIDDG 99 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh-ccccch---HHHHHHHCCcHHHHHhhC-C--CcEEEEeCC
Confidence 468999999999999999999999999999999764321 111111 134567778766554322 1 111111111
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s 214 (300)
.. ......+..++|.++.+.|.+++ .|++++ ..+|++++..+++ +.|.+++|.+++||+||+|+|.+|
T Consensus 100 ~~--------~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~-~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 100 KK--------KDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK-SLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred CC--------ccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe-EEEEECCCCEEEcCEEEECcCCCc
Confidence 10 01123455689999999998877 478876 5799999887766 558899998999999999999998
Q ss_pred HhhhhcCCCCCcccc-ceEEEEEeeCCCCCCCCCceEEE--E-----eC-----------CeEEEEEEcCCCeEEEEEE
Q 022277 215 PIAKWIGFSEPKYVG-HCAYRGLGYYPNGQPFEPKLNYI--Y-----GR-----------GVRAGYVPVSPTKVYWFIC 274 (300)
Q Consensus 215 ~~r~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~-----~~-----------~~~~~~~p~~~~~~~~~~~ 274 (300)
.+.+. ..+...+ +.++...++.+.. +++....++ + +. -.+.|++|.+++++.+-.+
T Consensus 170 ~l~~~---~~~~~~g~Q~a~Gi~~ev~~~-p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT 244 (447)
T PLN02463 170 CLVQY---DKPFNPGYQVAYGILAEVDSH-PFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEET 244 (447)
T ss_pred CccCC---CCCCCccceeeeeEEeecCCC-CcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEee
Confidence 76532 2233333 3445445555432 222111111 1 10 2478999999998765444
No 56
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.74 E-value=2.7e-16 Score=141.29 Aligned_cols=216 Identities=21% Similarity=0.200 Sum_probs=133.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcC---CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHH--HHh-ccccccceEEEc
Q 022277 60 DIVIVGAGIAGLATAVSLQRLG---IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD--LRS-QFLEIKGMAVKS 133 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G---~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~--~~~-~~~~~~~~~~~~ 133 (300)
||+|||||++|..+|..|++.+ ++|+|||+...+. .+-+.+..|....+++.+|+.+. +.+ ......++.+.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~-~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~ 79 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR-IGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN 79 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC-CCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence 7999999999999999999998 8999999887653 56667888888889999999876 433 334445666655
Q ss_pred CCCc-eEEEecCCC------------------------------------------------CCCCcceeeecHHHHHHH
Q 022277 134 EDGR-ELRSFGFKD------------------------------------------------EDASQEVRAVERRILLET 164 (300)
Q Consensus 134 ~~~~-~~~~~~~~~------------------------------------------------~~~~~~~~~i~~~~l~~~ 164 (300)
+... .-...+|.. .......+.++|.++.+.
T Consensus 80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~ 159 (454)
T PF04820_consen 80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF 159 (454)
T ss_dssp SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence 3321 011112210 001234567999999999
Q ss_pred HHhcC--CCCeEEeCCeEEEEEEcCCc-eEEEEEcCCcEEEcCEEEEcCCCChHhhhhc-CCCCCccccc----eEEEEE
Q 022277 165 LANQL--PPESVQFSSELAKIETSGNG-VTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFSEPKYVGH----CAYRGL 236 (300)
Q Consensus 165 l~~~~--~g~~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~-g~~~~~~~~~----~~~~~~ 236 (300)
|.+.+ .|++++.++ |+++..++++ +..|++++|++++||+||+|+|..+.+.++. +......... .++...
T Consensus 160 L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~ 238 (454)
T PF04820_consen 160 LRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQ 238 (454)
T ss_dssp HHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEE
T ss_pred HHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEe
Confidence 98877 699998875 7777776554 5679999999999999999999999876663 3222222211 222222
Q ss_pred eeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCCCC
Q 022277 237 GYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTP 280 (300)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 280 (300)
++... +..........+.+|+|.+|++++... ..++.....
T Consensus 239 ~~~~~--~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~ 279 (454)
T PF04820_consen 239 VPNED--PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI 279 (454)
T ss_dssp EE-SS--CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS
T ss_pred cCcCC--CCCCceeEEecCCceEEEccCCCcceE-EEEeccccC
Confidence 33322 333333345568899999999998776 555555433
No 57
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.73 E-value=1.5e-15 Score=133.86 Aligned_cols=194 Identities=23% Similarity=0.281 Sum_probs=122.1
Q ss_pred cEEEECCCHHHHHHHHHH--HHcCCcEEEEecCCCcC-CCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 60 DIVIVGAGIAGLATAVSL--QRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L--~~~G~~V~viE~~~~~~-~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
||+|||||+||+++|+.| ++.|.+|+|||+.+... +..+.+....... +..+.+.. .......+...++
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~------~~~~~~v~--~~w~~~~v~~~~~ 72 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDL------GPLDSLVS--HRWSGWRVYFPDG 72 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccc------cchHHHHh--eecCceEEEeCCC
Confidence 899999999999999999 77899999999988652 2222333222211 11122211 1222333433333
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCC-CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLP-PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~-g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
.... ..+.+..+++..|.+.+.+.+. +..+.++++|++++..++. +.|.+++|.+++|++||+|+|..+.
T Consensus 73 ~~~~--------~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~-~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 73 SRIL--------IDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDG-VLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred ceEE--------cccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCce-EEEEECCCCEEEeeEEEECCCcccc
Confidence 3211 1245668999999999998884 5567889999999988875 4488999999999999999996665
Q ss_pred hhhhcCCCCCccccceEEEEEeeCCCCCCCCC--ceEEEEe------CCeEEEEEEcCCCeEEEEEEEcCC
Q 022277 216 IAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEP--KLNYIYG------RGVRAGYVPVSPTKVYWFICHNNP 278 (300)
Q Consensus 216 ~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~p~~~~~~~~~~~~~~~ 278 (300)
.. .....++.+...++.+.. .++. ...|.+. .-.+.|++|.+++++.+-.++-.+
T Consensus 144 ~~-------~~~~~Q~f~G~~v~~~~~-~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~ 206 (374)
T PF05834_consen 144 KA-------RPLGLQHFYGWEVETDEP-VFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSP 206 (374)
T ss_pred cc-------cccccceeEEEEEeccCC-CCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcC
Confidence 21 111123333323444332 2322 2222222 235788999999998775444333
No 58
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.73 E-value=1.7e-16 Score=131.92 Aligned_cols=138 Identities=19% Similarity=0.225 Sum_probs=97.8
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCC--ce-----eeEchhHHHHHHHcCCcHHHHhcccccc
Q 022277 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG--TS-----LTLFKNGWSVLDALGVGSDLRSQFLEIK 127 (300)
Q Consensus 55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g--~~-----~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 127 (300)
....+||+|||||++|+++|+.|++.|++|+|+|+...++.+- .+ ..+......+++++++...
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~--------- 92 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK--------- 92 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce---------
Confidence 3457999999999999999999999999999999998764211 11 1222333445555544210
Q ss_pred ceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC-ceEEEEEcC-------
Q 022277 128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN-GVTILELVN------- 197 (300)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~-~~~~v~~~~------- 197 (300)
. . ....+.+++.++...|.+.+ .|++++++++|+++..+++ .+.+|.+..
T Consensus 93 -----~-------------~--~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g 152 (257)
T PRK04176 93 -----E-------------V--EDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG 152 (257)
T ss_pred -----e-------------e--cCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC
Confidence 0 0 11134467778888887766 5899999999999987666 555555431
Q ss_pred ----CcEEEcCEEEEcCCCChHhhhhcC
Q 022277 198 ----GTRIYANIVIGCDGIRSPIAKWIG 221 (300)
Q Consensus 198 ----g~~~~ad~vV~A~G~~s~~r~~~g 221 (300)
..++.|++||+|+|+++.+.+.+.
T Consensus 153 ~~~~~~~i~Ak~VI~ATG~~a~v~~~l~ 180 (257)
T PRK04176 153 LHVDPLTIEAKAVVDATGHDAEVVSVLA 180 (257)
T ss_pred CCCCcEEEEcCEEEEEeCCCcHHHHHHH
Confidence 247999999999999999888773
No 59
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.72 E-value=2.3e-15 Score=133.73 Aligned_cols=142 Identities=21% Similarity=0.312 Sum_probs=93.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccc-eEEEcCCCce
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKG-MAVKSEDGRE 138 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (300)
||+|||||++|+++|+.|++.|++|+|+|+.+... ....+.++... ++.+++.+.+.. .... ..+......
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~- 72 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP-GNHTYGVWDDD---LSDLGLADCVEH---VWPDVYEYRFPKQP- 72 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC-CCccccccHhh---hhhhchhhHHhh---cCCCceEEecCCcc-
Confidence 79999999999999999999999999999987643 22233333322 233333211111 1111 111111110
Q ss_pred EEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
......+..+++..+.+.|.+.+ .+++++ ..+|++++.+++..+.|.+++|++++|++||+|+|.+|.+
T Consensus 73 --------~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~ 143 (388)
T TIGR01790 73 --------RKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLV 143 (388)
T ss_pred --------hhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhc
Confidence 11134455689999999998777 367775 6688888877444466888888889999999999999965
Q ss_pred hh
Q 022277 217 AK 218 (300)
Q Consensus 217 r~ 218 (300)
++
T Consensus 144 ~~ 145 (388)
T TIGR01790 144 QY 145 (388)
T ss_pred cc
Confidence 43
No 60
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.71 E-value=5.3e-16 Score=128.59 Aligned_cols=136 Identities=21% Similarity=0.308 Sum_probs=94.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCc--e-----eeEchhHHHHHHHcCCcHHHHhccccccc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT--S-----LTLFKNGWSVLDALGVGSDLRSQFLEIKG 128 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~--~-----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 128 (300)
...+||+|||||++||++|+.|+++|++|+|+||+..++.+.. + ..+.....++++++++..
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~----------- 87 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRY----------- 87 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCe-----------
Confidence 3579999999999999999999999999999999987742210 0 011122333444443320
Q ss_pred eEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC--ceEEEEEcC-------
Q 022277 129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN--GVTILELVN------- 197 (300)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~--~~~~v~~~~------- 197 (300)
. ..+..++..++.++.+.|.+++ .|++++++++|+++..+++ .+.+|.++.
T Consensus 88 ---~---------------~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g 149 (254)
T TIGR00292 88 ---E---------------DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG 149 (254)
T ss_pred ---e---------------eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC
Confidence 0 0112234456778888887666 4899999999999988766 456666542
Q ss_pred ----CcEEEcCEEEEcCCCChHhhhhc
Q 022277 198 ----GTRIYANIVIGCDGIRSPIAKWI 220 (300)
Q Consensus 198 ----g~~~~ad~vV~A~G~~s~~r~~~ 220 (300)
...+.|++||+|||..+.+.+.+
T Consensus 150 ~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 150 LHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred CCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 23689999999999988766555
No 61
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.69 E-value=6.2e-16 Score=121.11 Aligned_cols=132 Identities=23% Similarity=0.291 Sum_probs=91.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCc-------eeeEchhHHHHHHHcCCcHHHHhccccccce
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT-------SLTLFKNGWSVLDALGVGSDLRSQFLEIKGM 129 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~-------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 129 (300)
..+||+||||||+||++|+.|++.|++|.|+|++..++.+-. .+.+...+..+|+++|+.-.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~----------- 84 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE----------- 84 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E-----------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE-----------
Confidence 579999999999999999999999999999999988753211 24456667788888776311
Q ss_pred EEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcC-CceEEEEEc------CC--
Q 022277 130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSG-NGVTILELV------NG-- 198 (300)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~-~~~~~v~~~------~g-- 198 (300)
.....++..+..++...|..++ .|++|+..+.|.++...+ +++.+|.++ .|
T Consensus 85 ------------------~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glH 146 (230)
T PF01946_consen 85 ------------------EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLH 146 (230)
T ss_dssp ------------------E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T
T ss_pred ------------------EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcC
Confidence 1134456677778887777655 699999999999998777 666667664 22
Q ss_pred ---cEEEcCEEEEcCCCChHhh
Q 022277 199 ---TRIYANIVIGCDGIRSPIA 217 (300)
Q Consensus 199 ---~~~~ad~vV~A~G~~s~~r 217 (300)
-.+++++||.|||+-+.+.
T Consensus 147 vDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 147 VDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp -B-EEEEESEEEE---SSSSST
T ss_pred CCcceEEEeEEEeCCCCchHHH
Confidence 3799999999999877543
No 62
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.69 E-value=2.9e-16 Score=133.27 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=98.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-----CCCceeeEchh--HHHHHHHcC----CcHHHHhcccc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-----TGGTSLTLFKN--GWSVLDALG----VGSDLRSQFLE 125 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~-----~~g~~~~~~~~--~~~~l~~~g----~~~~~~~~~~~ 125 (300)
+.+||+|||||++|++||..++++|.+|+|||+++.++ .+|..+.++.. ..+++.+.. ........+.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 56899999999999999999999999999999999875 23444444322 223333322 01111112222
Q ss_pred ccceEEEcCCCceEEEecCCCCCCCcceee-ecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEE
Q 022277 126 IKGMAVKSEDGRELRSFGFKDEDASQEVRA-VERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIY 202 (300)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 202 (300)
.+.+.+....|.....- ..+..+.. ..-..++++|..++ .|++++++++|.+++.++.+ ..+.+++|+++.
T Consensus 82 ~d~i~~~e~~Gi~~~e~-----~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~-f~l~t~~g~~i~ 155 (408)
T COG2081 82 EDFIDWVEGLGIALKEE-----DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG-FRLDTSSGETVK 155 (408)
T ss_pred HHHHHHHHhcCCeeEEc-----cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCce-EEEEcCCCCEEE
Confidence 22222222222211111 11111111 33456777777777 59999999999999998755 569999998899
Q ss_pred cCEEEEcCCCChH
Q 022277 203 ANIVIGCDGIRSP 215 (300)
Q Consensus 203 ad~vV~A~G~~s~ 215 (300)
||.+|+|+|..|.
T Consensus 156 ~d~lilAtGG~S~ 168 (408)
T COG2081 156 CDSLILATGGKSW 168 (408)
T ss_pred ccEEEEecCCcCC
Confidence 9999999997664
No 63
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.68 E-value=4.3e-16 Score=121.25 Aligned_cols=135 Identities=19% Similarity=0.283 Sum_probs=102.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCc-------eeeEchhHHHHHHHcCCcHHHHhccccccce
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT-------SLTLFKNGWSVLDALGVGSDLRSQFLEIKGM 129 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~-------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 129 (300)
...||+||||||+||+||+.|+++|++|+|+||+-.++.+-. .+.+...+.++|+++|+.-
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~y------------ 96 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRY------------ 96 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcc------------
Confidence 468999999999999999999999999999999998853211 1334555677777777631
Q ss_pred EEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC-ceEEEEEc----------
Q 022277 130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN-GVTILELV---------- 196 (300)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~-~~~~v~~~---------- 196 (300)
......++..+..++...|..++ .|.+|+.++.|.++...++ ++.+|.++
T Consensus 97 -----------------e~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh 159 (262)
T COG1635 97 -----------------EEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH 159 (262)
T ss_pred -----------------eecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccc
Confidence 12234466677778877777666 4899999999999988777 66666654
Q ss_pred -CCcEEEcCEEEEcCCCChHhhhhc
Q 022277 197 -NGTRIYANIVIGCDGIRSPIAKWI 220 (300)
Q Consensus 197 -~g~~~~ad~vV~A~G~~s~~r~~~ 220 (300)
|--.+++++||.|||+-..+-+.+
T Consensus 160 vDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 160 VDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred cCcceeeEEEEEeCCCCchHHHHHH
Confidence 223699999999999988776655
No 64
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.68 E-value=9.6e-16 Score=146.19 Aligned_cols=141 Identities=23% Similarity=0.311 Sum_probs=103.8
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcC--CcHHHHhccccccceEEEcCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALG--VGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~~~~ 135 (300)
+|+|||||++||++|+.|++. |++|+|+||++.....|.++.+.++..+.|+.++ +...+...........+.. .
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~ 80 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF-K 80 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE-C
Confidence 799999999999999999998 8999999999987777888999999988888766 2223322222222333332 2
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (300)
+.... ..+..+..+.|..|.+.|.+.+ .|++++++++|+++... ..++|+||+|||.+
T Consensus 81 g~~~~-------~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~-------------~~~~D~VVgADG~~ 140 (765)
T PRK08255 81 GRRIR-------SGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL-------------AADADLVIASDGLN 140 (765)
T ss_pred CEEEE-------ECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh-------------hcCCCEEEEcCCCC
Confidence 22211 1133345688999999999877 48999999988765321 15789999999999
Q ss_pred hHhhhhcC
Q 022277 214 SPIAKWIG 221 (300)
Q Consensus 214 s~~r~~~g 221 (300)
|.+|+.+.
T Consensus 141 S~vR~~~~ 148 (765)
T PRK08255 141 SRIRTRYA 148 (765)
T ss_pred HHHHHHHH
Confidence 99999873
No 65
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.66 E-value=2.9e-15 Score=126.73 Aligned_cols=233 Identities=17% Similarity=0.193 Sum_probs=158.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCc--C-------CCCceeeEchhHHHHHHHcCCcHHHHh-c
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSL--R-------TGGTSLTLFKNGWSVLDALGVGSDLRS-Q 122 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~----G~~V~viE~~~~~--~-------~~g~~~~~~~~~~~~l~~~g~~~~~~~-~ 122 (300)
..+||+|||||++|+++|..|... -.+|.++|....+ . -..+...+.+.+...++.+|.|+.+.. .
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R 114 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR 114 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhc
Confidence 479999999999999999999864 4689999998432 1 134456778899999999999988765 3
Q ss_pred cccccceEEEcCCCceEEEecCCCCCCC-cceeeecHHHHHHHHHh-----cCCCCeEEeCCeEEEEEEc-------CCc
Q 022277 123 FLEIKGMAVKSEDGRELRSFGFKDEDAS-QEVRAVERRILLETLAN-----QLPPESVQFSSELAKIETS-------GNG 189 (300)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~l~~~l~~-----~~~g~~i~~~~~v~~i~~~-------~~~ 189 (300)
..+...+..++..... .+.+..+... +....+....+...|.. ..++++|...+++..++.- +..
T Consensus 115 ~~~~~~~~v~Ds~s~a--~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~ 192 (481)
T KOG3855|consen 115 YQKFSRMLVWDSCSAA--LILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGM 192 (481)
T ss_pred cccccceeeecccchh--hhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcc
Confidence 4444555554432221 1222222222 22344555555555552 2257899999998887652 223
Q ss_pred eEEEEEcCCcEEEcCEEEEcCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCC-CCceEEEEeCCeEEEEEEcCCC
Q 022277 190 VTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPF-EPKLNYIYGRGVRAGYVPVSPT 267 (300)
Q Consensus 190 ~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~ 267 (300)
...+.+.+|..+..|++|+|+|.+|.+|+..++..+.+. .+++..+....+.+... ...++.|...|+.+ +.|++++
T Consensus 193 ~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiA-llpl~d~ 271 (481)
T KOG3855|consen 193 WFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIA-LLPLSDT 271 (481)
T ss_pred eEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCcee-ecccccc
Confidence 456888899999999999999999999999998877663 45566655555553333 35667777666666 8999987
Q ss_pred eEEEEEEEcCCCCCchhhhhhhhhhh
Q 022277 268 KVYWFICHNNPTPGYLALVMLKHIWM 293 (300)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (300)
...++|...++....+..+.++-+.
T Consensus 272 -~s~LvWSts~~~a~~L~~lp~e~fv 296 (481)
T KOG3855|consen 272 -LSSLVWSTSPENASILKSLPEERFV 296 (481)
T ss_pred -cccceeecCHHHHHHHhcCCchhHH
Confidence 4557777776655555444443333
No 66
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.65 E-value=1.1e-15 Score=134.78 Aligned_cols=141 Identities=28% Similarity=0.393 Sum_probs=77.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-----CCceeeEch-----------------hHHHHHHHcCCc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLFK-----------------NGWSVLDALGVG 116 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-----~g~~~~~~~-----------------~~~~~l~~~g~~ 116 (300)
|||+|||||++||.||+.|++.|.+|+|+||++.++. ++.-+.++. .....++.++..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 6999999999999999999999999999999988642 222222221 012233333221
Q ss_pred HHHHhccccccceEEEc-CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEE
Q 022277 117 SDLRSQFLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTIL 193 (300)
Q Consensus 117 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v 193 (300)
+ +.. .+...++.+.. .+++... ..-....+.+.|.+.+ .|++|+++++|++++.++++++.|
T Consensus 81 d-~~~-ff~~~Gv~~~~~~~gr~fP-------------~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v 145 (409)
T PF03486_consen 81 D-LIA-FFEELGVPTKIEEDGRVFP-------------KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGV 145 (409)
T ss_dssp H-HHH-HHHHTT--EEE-STTEEEE-------------TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEE
T ss_pred H-HHH-HHHhcCCeEEEcCCCEECC-------------CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEe
Confidence 1 111 11112222222 1222110 1113346666666655 389999999999999988887889
Q ss_pred EEcCCcEEEcCEEEEcCCCCh
Q 022277 194 ELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 194 ~~~~g~~~~ad~vV~A~G~~s 214 (300)
.++++..+.||.||+|+|..|
T Consensus 146 ~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 146 KTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp EETTTEEEEESEEEE----SS
T ss_pred eccCcccccCCEEEEecCCCC
Confidence 997777899999999999876
No 67
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.64 E-value=4.3e-14 Score=124.12 Aligned_cols=190 Identities=22% Similarity=0.259 Sum_probs=111.0
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 60 DIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
||+|||||++|+++|+.|++. |++|+|+|+.+.... ...+.++.......... ..+.+ .........++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~-~~tw~~~~~~~~~~~~~-~~~~~--v~~~W~~~~v~~~~~- 75 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG-NHTWSFFDSDLSDAQHA-WLADL--VQTDWPGYEVRFPKY- 75 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC-cccceecccccchhhhh-hhhhh--heEeCCCCEEECcch-
Confidence 899999999999999999987 999999999875432 22222221111000000 00011 111112222222111
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIA 217 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r 217 (300)
....+..+..+.+..|.+.+.+.+.. .++++++|+++ ++++ |.+.+|++++|++||+|+|.+|...
T Consensus 76 --------~~~l~~~Y~~I~r~~f~~~l~~~l~~-~i~~~~~V~~v--~~~~---v~l~dg~~~~A~~VI~A~G~~s~~~ 141 (370)
T TIGR01789 76 --------RRKLKTAYRSMTSTRFHEGLLQAFPE-GVILGRKAVGL--DADG---VDLAPGTRINARSVIDCRGFKPSAH 141 (370)
T ss_pred --------hhhcCCCceEEEHHHHHHHHHHhhcc-cEEecCEEEEE--eCCE---EEECCCCEEEeeEEEECCCCCCCcc
Confidence 11123456789999999999887733 38889999988 3444 4447888999999999999886421
Q ss_pred hhcCCCCCccccceEEEEE-eeCCCCCCCCCc--eEEEE----eCC-eEEEEEEcCCCeEEEEEEEcCC
Q 022277 218 KWIGFSEPKYVGHCAYRGL-GYYPNGQPFEPK--LNYIY----GRG-VRAGYVPVSPTKVYWFICHNNP 278 (300)
Q Consensus 218 ~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~----~~~-~~~~~~p~~~~~~~~~~~~~~~ 278 (300)
.+.++..+.|+ .... .|++.. ..|.+ ..+ .+.+++|++++++.+--+...+
T Consensus 142 --------~~~~~Q~f~G~~~r~~--~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~ 200 (370)
T TIGR01789 142 --------LKGGFQVFLGREMRLQ--EPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYAD 200 (370)
T ss_pred --------ccceeeEEEEEEEEEc--CCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccC
Confidence 11334444433 3332 224322 22222 233 3455689999999885544444
No 68
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.59 E-value=1.4e-13 Score=120.70 Aligned_cols=116 Identities=21% Similarity=0.242 Sum_probs=73.5
Q ss_pred eeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh-hhhcCCCCCcccc
Q 022277 153 VRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI-AKWIGFSEPKYVG 229 (300)
Q Consensus 153 ~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~-r~~~g~~~~~~~~ 229 (300)
...++...+.+.|.+.+ .|++++.+++|+++..+++++.+|.+.+|+ +.||.||+|+|.++.. .+.++...+....
T Consensus 141 ~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~~~~~~~ 219 (358)
T PF01266_consen 141 GGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLDLPLRPV 219 (358)
T ss_dssp EEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTSSTEEEE
T ss_pred cccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeeccccccccccc
Confidence 34578888888888776 589999999999999998886679999997 9999999999999854 5555654433322
Q ss_pred ceEEEEEeeCCCCCCCCCce---EEEEeCCeEEEEEEcCCCeEEEE
Q 022277 230 HCAYRGLGYYPNGQPFEPKL---NYIYGRGVRAGYVPVSPTKVYWF 272 (300)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~ 272 (300)
..... ..+..... ..... .....+....+++|.. +.+.+.
T Consensus 220 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~-g~~~ig 262 (358)
T PF01266_consen 220 RGQVL-VLEPPESP-LAPAILFPPVIFGPSDGVYIRPRP-GGVLIG 262 (358)
T ss_dssp EEEEE-EEEGCCSG-SSSEEEEEEECESSCTEEEEEEET-TEEEEE
T ss_pred ceEEE-EEccCCcc-cccccccccccccccccceecccc-cccccc
Confidence 22121 22222121 11111 1112234566678888 666544
No 69
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.59 E-value=2.5e-13 Score=120.32 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=55.4
Q ss_pred eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC-hHhhhhcCCCCCc
Q 022277 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR-SPIAKWIGFSEPK 226 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~-s~~r~~~g~~~~~ 226 (300)
..++...+.+.|.+.+ .|++++.+++|++++.+++. +.|.+.++ ++.+|.||+|+|.+ +.+++.+|...|.
T Consensus 140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~-~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~~~ 213 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELL-VTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEIPL 213 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCe-EEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCCCc
Confidence 3567778888877655 48999999999999887665 44777766 69999999999987 4677777766554
No 70
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.57 E-value=4.1e-13 Score=118.80 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=47.3
Q ss_pred eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
.++...+...+.+.+ .|++++++++|++++.++++ +.|.+++| .+.+|.||+|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDG-VTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCe-EEEEeCCC-EEEeeEEEEecCcchh
Confidence 466677777665554 48999999999999987665 55888877 6999999999999864
No 71
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.54 E-value=9.4e-14 Score=124.98 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=84.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHh-ccccccceEEEcCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMAVKSED 135 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~ 135 (300)
...+|+|||||++||++|..|.+.|++|+|+|+++.++ | .+...+.... +.+++...... ....+.......+.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG--G-~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG--G-LWVYTPKSES--DPLSLDPTRSIVHSSVYESLRTNLPR 83 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc--c-eeecCCCcCC--CccccCCCCcccchhhhhhhhccCCH
Confidence 46899999999999999999999999999999998773 2 2332221100 00011000000 00000000000000
Q ss_pred C-ceEEEecCCCCC---CCcceeeecHHHHHHHHHhcC--CCCe--EEeCCeEEEEEEcCCceEEEEEcCC--c--EEEc
Q 022277 136 G-RELRSFGFKDED---ASQEVRAVERRILLETLANQL--PPES--VQFSSELAKIETSGNGVTILELVNG--T--RIYA 203 (300)
Q Consensus 136 ~-~~~~~~~~~~~~---~~~~~~~i~~~~l~~~l~~~~--~g~~--i~~~~~v~~i~~~~~~~~~v~~~~g--~--~~~a 203 (300)
. .....+++.... ...........++.+.|.+.+ .++. |+++++|++++..+++ |.|++.++ . +..+
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~-w~V~~~~~~~~~~~~~~ 162 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK-WRVQSKNSGGFSKDEIF 162 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe-EEEEEEcCCCceEEEEc
Confidence 0 000111111100 000111234567777776665 2555 8999999999887654 77877643 2 4579
Q ss_pred CEEEEcCCCChH
Q 022277 204 NIVIGCDGIRSP 215 (300)
Q Consensus 204 d~vV~A~G~~s~ 215 (300)
|.||+|+|..+.
T Consensus 163 d~VIvAtG~~~~ 174 (461)
T PLN02172 163 DAVVVCNGHYTE 174 (461)
T ss_pred CEEEEeccCCCC
Confidence 999999998653
No 72
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.53 E-value=1.6e-13 Score=120.13 Aligned_cols=167 Identities=24% Similarity=0.360 Sum_probs=104.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCC---CC------ceeeEchhH-------------HHHHHH
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRT---GG------TSLTLFKNG-------------WSVLDA 112 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~---~g------~~~~~~~~~-------------~~~l~~ 112 (300)
..+||+|||||+.|+++|++|++.+ ++|+|+||.+.+.. .. .++...+.+ .++.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999998 99999999987642 11 122222221 111222
Q ss_pred cCCcHH-------------------HHhccccccceE-EEcCCCceEEEecCC-C-----CCCCcceeeecHHHHHHHHH
Q 022277 113 LGVGSD-------------------LRSQFLEIKGMA-VKSEDGRELRSFGFK-D-----EDASQEVRAVERRILLETLA 166 (300)
Q Consensus 113 ~g~~~~-------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-----~~~~~~~~~i~~~~l~~~l~ 166 (300)
+++... +.+... ..++. +...+...+..+... . ....+....++..++...|.
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~-~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGK-ANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHh-hCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence 221100 000000 00000 111111111111000 0 01123345678888888888
Q ss_pred hcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcE-EEcCEEEEcCCCCh-HhhhhcCCCC
Q 022277 167 NQL--PPESVQFSSELAKIETSGNGVTILELVNGTR-IYANIVIGCDGIRS-PIAKWIGFSE 224 (300)
Q Consensus 167 ~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~-~~ad~vV~A~G~~s-~~r~~~g~~~ 224 (300)
+.+ .|++++++++|+++++.+++++.+.+.+|+. ++|++||.|.|..| .+.+..|++.
T Consensus 161 e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 161 EEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence 777 6999999999999999988656688888876 99999999999988 5667667654
No 73
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.53 E-value=7e-14 Score=120.99 Aligned_cols=142 Identities=20% Similarity=0.283 Sum_probs=88.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEE-ecCCCcCCCCceeeEchhH----HHHHHHcCCcHHHHhccccccceEEEcC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVI-EQADSLRTGGTSLTLFKNG----WSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~vi-E~~~~~~~~g~~~~~~~~~----~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 134 (300)
||+|||||.||++||+.+++.|.+|+++ ++.+.+..-.+.-++...+ .+.++.+|-. .-.......+++...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~---m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGL---MGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-S---HHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhH---HHHHHhHhhhhhhcc
Confidence 8999999999999999999999999999 4444443333333332222 2333444411 111111222322221
Q ss_pred CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (300)
+.. ...........++|..+.+.+.+.+ ++++|. +.+|+++..+++.+.+|.+.+|+.+.+|.||+|||
T Consensus 78 N~s-------kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTG 149 (392)
T PF01134_consen 78 NRS-------KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATG 149 (392)
T ss_dssp STT-------S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TT
T ss_pred ccc-------CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecc
Confidence 110 0111223345789998888887766 577875 67999999999999999999999999999999999
Q ss_pred C
Q 022277 212 I 212 (300)
Q Consensus 212 ~ 212 (300)
.
T Consensus 150 t 150 (392)
T PF01134_consen 150 T 150 (392)
T ss_dssp T
T ss_pred c
Confidence 8
No 74
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.53 E-value=8e-13 Score=117.61 Aligned_cols=68 Identities=24% Similarity=0.478 Sum_probs=54.8
Q ss_pred eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh-HhhhhcCCC
Q 022277 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS-PIAKWIGFS 223 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~~~g~~ 223 (300)
..++...+.+.|.+.+ .|++++++++|++++.++++ +.|.+.+| ++.||.||+|+|.++ .+.+.+|..
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 4567888888888766 48999999999999877666 45777777 699999999999998 466666754
No 75
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.52 E-value=1e-12 Score=120.20 Aligned_cols=111 Identities=10% Similarity=-0.016 Sum_probs=65.1
Q ss_pred ecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcC---Cc--EEEcCEEEEcCCCChH-hhhhc-CCCC--
Q 022277 156 VERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN---GT--RIYANIVIGCDGIRSP-IAKWI-GFSE-- 224 (300)
Q Consensus 156 i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g~--~~~ad~vV~A~G~~s~-~r~~~-g~~~-- 224 (300)
++...+...+.+.+ .|++++.+++|+++..+++. +.|.+.+ |+ ++.|+.||+|+|.|+. +.+.+ |...
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~ 230 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPY 230 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCc
Confidence 45666666665444 58999999999999877554 5566654 43 6899999999999984 44433 5432
Q ss_pred Cccc--cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEE
Q 022277 225 PKYV--GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWF 272 (300)
Q Consensus 225 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 272 (300)
+... |++. +.+ ..........+...++..++++|..++.....
T Consensus 231 ~i~p~kG~~l---vl~--~~~~~~~~~~~~~~dgr~v~~~P~~~g~~liG 275 (508)
T PRK12266 231 GIRLVKGSHI---VVP--RLFDHDQAYILQNPDGRIVFAIPYEDDFTLIG 275 (508)
T ss_pred ceeeeeeEEE---EEC--CcCCCCcEEEEeCCCCCEEEEEEeCCCeEEEe
Confidence 2111 2221 111 11111121222223466677888876655443
No 76
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.52 E-value=9.1e-13 Score=117.85 Aligned_cols=112 Identities=14% Similarity=-0.004 Sum_probs=69.0
Q ss_pred eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEc-CCceEEEEEcCCcEEEcCEEEEcCCCCh-HhhhhcCCCCCccccc
Q 022277 155 AVERRILLETLANQL--PPESVQFSSELAKIETS-GNGVTILELVNGTRIYANIVIGCDGIRS-PIAKWIGFSEPKYVGH 230 (300)
Q Consensus 155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~~~g~~~~~~~~~ 230 (300)
.++...+...|.+.+ .|++++.+++|++++.. ++.++.|.+++| ++.++.||+|+|.++ .+.+.++...|.....
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~~~~~ 257 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPIESHP 257 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCcCccc
Confidence 355666766665555 48999999999999765 455566888877 699999888888776 5676667665543322
Q ss_pred eEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEE
Q 022277 231 CAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWF 272 (300)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 272 (300)
..+. ..+ ...+... .++.......++.|.+++++.+.
T Consensus 258 ~~~~-~~~--~~~~~~~--~~~~~~~~~~y~~p~~~g~~~ig 294 (407)
T TIGR01373 258 LQAL-VSE--PLKPIID--TVVMSNAVHFYVSQSDKGELVIG 294 (407)
T ss_pred ceEE-Eec--CCCCCcC--CeEEeCCCceEEEEcCCceEEEe
Confidence 2221 121 1111111 12233444566788888866444
No 77
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.52 E-value=2e-12 Score=118.30 Aligned_cols=110 Identities=9% Similarity=-0.058 Sum_probs=66.5
Q ss_pred eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC----cEEEcCEEEEcCCCChH-hhhhc-CCCC-C
Q 022277 155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG----TRIYANIVIGCDGIRSP-IAKWI-GFSE-P 225 (300)
Q Consensus 155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g----~~~~ad~vV~A~G~~s~-~r~~~-g~~~-~ 225 (300)
.++...+...+...+ .|++++.+++|+++..+++. +.|.+.++ .++.|+.||+|+|.|+. +.+.+ |... +
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~ 229 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSR 229 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCc
Confidence 356677776666555 58999999999999887654 55766554 25899999999999984 54534 5432 2
Q ss_pred -cc--ccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEE
Q 022277 226 -KY--VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVY 270 (300)
Q Consensus 226 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 270 (300)
.. .|++. +.+ ..........+...++..++++|..++...
T Consensus 230 ~v~p~kG~~l---v~~--~~~~~~~~~~~~~~dgr~~~i~P~~~~~~l 272 (502)
T PRK13369 230 NVRLVKGSHI---VVP--KFWDGAQAYLFQNPDKRVIFANPYEGDFTL 272 (502)
T ss_pred ceEEeeEEEE---EeC--CccCCCceEEEeCCCCeEEEEEEecCCEEE
Confidence 11 12221 121 111111112222345566778998766554
No 78
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.51 E-value=2e-13 Score=124.34 Aligned_cols=146 Identities=17% Similarity=0.218 Sum_probs=90.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCCCCceeeEch----hHHHHHHHcCC-cHHHHhccccccceE
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD-SLRTGGTSLTLFK----NGWSVLDALGV-GSDLRSQFLEIKGMA 130 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~-~~~~~g~~~~~~~----~~~~~l~~~g~-~~~~~~~~~~~~~~~ 130 (300)
..+||+|||||+||+++|+.+++.|.+|+++|++. .++.-++.-.+.. ...+.++.+|- ........ .. .+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~-gi-q~r 80 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKT-GI-QFR 80 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhc-cC-cee
Confidence 46999999999999999999999999999999984 3321111111111 11222233331 11111100 00 011
Q ss_pred EEcC-CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEE
Q 022277 131 VKSE-DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV 206 (300)
Q Consensus 131 ~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v 206 (300)
+.+. .|.. .......+++..+...+.+.+ +++++. ..+|+++..+++.+.+|.+.+|..+.|+.|
T Consensus 81 ~ln~skGpA----------V~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~V 149 (618)
T PRK05192 81 MLNTSKGPA----------VRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAV 149 (618)
T ss_pred ecccCCCCc----------eeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEE
Confidence 1111 0110 011123577777877776655 467774 667999988878878899999999999999
Q ss_pred EEcCCCChH
Q 022277 207 IGCDGIRSP 215 (300)
Q Consensus 207 V~A~G~~s~ 215 (300)
|+|+|.++.
T Consensus 150 IlATGTFL~ 158 (618)
T PRK05192 150 VLTTGTFLR 158 (618)
T ss_pred EEeeCcchh
Confidence 999998764
No 79
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.2e-12 Score=117.40 Aligned_cols=168 Identities=20% Similarity=0.259 Sum_probs=102.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 134 (300)
....||+|||||++||++|+.|.++|.+ ++|+||+..++..-. . ..+.++....+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~----------~--------------~ry~~l~~~~p 61 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR----------Y--------------NRYPGLRLDSP 61 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcch----------h--------------ccCCceEECCc
Confidence 4679999999999999999999999998 999999997732111 0 01111111111
Q ss_pred CCceEEEecCCCCC---CCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCC-ceEEEEEcCCcE--EEcCEEEE
Q 022277 135 DGRELRSFGFKDED---ASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGN-GVTILELVNGTR--IYANIVIG 208 (300)
Q Consensus 135 ~~~~~~~~~~~~~~---~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~-~~~~v~~~~g~~--~~ad~vV~ 208 (300)
.....+++.... ...... -.+..+...+.+......|.+++.|+.+..+++ ..|.|++++|.. +.||.||+
T Consensus 62 --~~~~~~~~~p~~~~~~~~~~~-~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ 138 (443)
T COG2072 62 --KWLLGFPFLPFRWDEAFAPFA-EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVV 138 (443)
T ss_pred --hheeccCCCccCCcccCCCcc-cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEE
Confidence 111123222221 111111 123444444444433457788888888777654 368899998865 45999999
Q ss_pred cCCCChHhhhhcCCCCCccccceEEEEEeeCC----CCCCCCCceEEEEeCC
Q 022277 209 CDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYP----NGQPFEPKLNYIYGRG 256 (300)
Q Consensus 209 A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 256 (300)
|+|..+.. ..|.+.|...|.+.+-++ ....+......+.|.|
T Consensus 139 ATG~~~~P------~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~G 184 (443)
T COG2072 139 ATGHLSEP------YIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAG 184 (443)
T ss_pred eecCCCCC------CCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCC
Confidence 99996643 356666666555554443 3344555556666653
No 80
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.49 E-value=2.6e-12 Score=115.00 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=49.0
Q ss_pred ecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC-----cEEEcCEEEEcCCCChH-hhhhcCCCCC
Q 022277 156 VERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG-----TRIYANIVIGCDGIRSP-IAKWIGFSEP 225 (300)
Q Consensus 156 i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-----~~~~ad~vV~A~G~~s~-~r~~~g~~~~ 225 (300)
++...+...|.+.+ .|++++++++|++++.+++.+ .+.+.++ ..++||.||+|+|.++. +.+.++...+
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~~~ 270 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDRVN 270 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEE-EEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCCCc
Confidence 45556666666655 489999999999998776653 3544332 36899999999999974 5555565433
No 81
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.49 E-value=1.4e-12 Score=118.31 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=53.8
Q ss_pred eeecHHHHHHHHHhcC--CC-CeEEeCCeEEEEEEcCCceEEEEEc---CCc--EEEcCEEEEcCCCCh-HhhhhcCCC
Q 022277 154 RAVERRILLETLANQL--PP-ESVQFSSELAKIETSGNGVTILELV---NGT--RIYANIVIGCDGIRS-PIAKWIGFS 223 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~--~g-~~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G~~s-~~r~~~g~~ 223 (300)
..++...+.+.|.+.+ .| ++++++++|++++.++++.|.|.+. +|+ ++.|++||+|+|.++ .+++.+|+.
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 4678888888887776 24 7999999999999866653545543 353 689999999999987 567777775
No 82
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.48 E-value=1.7e-12 Score=122.73 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=50.6
Q ss_pred eecHHHHHHHHHhcCC-CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 155 AVERRILLETLANQLP-PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 155 ~i~~~~l~~~l~~~~~-g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
.+++..+.+.|.+.+. |++++++++|++++.++++ +.|.+++|..+.||.||+|+|.++.
T Consensus 404 ~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQQLTIHFGHEVARLEREDDG-WQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCE-EEEEECCCcEEECCEEEECCCCCcc
Confidence 4678899999988774 6899999999999887766 5588888877889999999999984
No 83
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.47 E-value=1.9e-13 Score=110.42 Aligned_cols=135 Identities=24% Similarity=0.320 Sum_probs=71.5
Q ss_pred EEECCCHHHHHHHHHHHHcCCc-EEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCceEE
Q 022277 62 VIVGAGIAGLATAVSLQRLGIG-SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELR 140 (300)
Q Consensus 62 vIIGgG~aGl~~A~~L~~~G~~-V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (300)
+|||||++||++|..|.++|++ |+|+|+++.++ |. +.-... ...+. ..........+.. +.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~G--g~-w~~~~~------~~~~~----~~~~~~~~~~~~~-----~~ 62 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPG--GV-WRRYYS------YTRLH----SPSFFSSDFGLPD-----FE 62 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSST--TH-HHCH-T------TTT-B----SSSCCTGGSS--C-----CC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCC--Ce-eEEeCC------CCccc----cCccccccccCCc-----cc
Confidence 7999999999999999999999 99999998773 21 000000 00000 0000000000000 00
Q ss_pred EecCCCC-CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 141 SFGFKDE-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 141 ~~~~~~~-~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
.+.+... ............++.+.|...+ .+++++++++|++++.++++ |.|++.+++++.||.||+|+|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 63 SFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp HSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETTS-EEEEEEEEE---SSCS
T ss_pred ccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEecceeeeeeEEEeeeccCC
Confidence 0000000 0000111245555555554444 37789999999999999888 8899999988999999999998654
No 84
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=2.1e-12 Score=114.44 Aligned_cols=174 Identities=22% Similarity=0.308 Sum_probs=104.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHH----HHHHHc--CCcHHHHhccccccceE
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW----SVLDAL--GVGSDLRSQFLEIKGMA 130 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~----~~l~~~--g~~~~~~~~~~~~~~~~ 130 (300)
...+|+|||||++||++|.+|.+.|++|+|+||.+.++ .-+.+.+... ..++++ .+..+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG---GlW~y~~~~~~~~ss~Y~~l~tn~pKe~----------- 70 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG---GLWKYTENVEVVHSSVYKSLRTNLPKEM----------- 70 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc---ceEeecCcccccccchhhhhhccCChhh-----------
Confidence 57899999999999999999999999999999999873 2233322211 111111 111111
Q ss_pred EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCC----CCeEEeCCeEEEEEEcCCceEEEEEcCC----cEEE
Q 022277 131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLP----PESVQFSSELAKIETSGNGVTILELVNG----TRIY 202 (300)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~----g~~i~~~~~v~~i~~~~~~~~~v~~~~g----~~~~ 202 (300)
.....++++.. ......++.++.+.|.+.+. ...|.++++|..+...+++.|.|.+.+. +..-
T Consensus 71 ------~~~~dfpf~~~---~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~i 141 (448)
T KOG1399|consen 71 ------MGYSDFPFPER---DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEI 141 (448)
T ss_pred ------hcCCCCCCccc---CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEE
Confidence 01112233221 22333556677777776663 2468999999999888744588888665 3567
Q ss_pred cCEEEEcCCCCh-Hh-hhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeC
Q 022277 203 ANIVIGCDGIRS-PI-AKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGR 255 (300)
Q Consensus 203 ad~vV~A~G~~s-~~-r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (300)
+|.||+|+|.+. +. ...-|.....+.|.... ..+++....+.+...++.|-
T Consensus 142 fd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iH--S~~Yk~~e~f~~k~VlVIG~ 194 (448)
T KOG1399|consen 142 FDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIH--SHDYKSPEKFRDKVVLVVGC 194 (448)
T ss_pred eeEEEEcccCcCCCCCCcCCCCchhhcCCccee--hhhccCcccccCceEEEECC
Confidence 999999999884 11 11112111233333221 34555555666666666654
No 85
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.45 E-value=4.5e-12 Score=113.71 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=53.1
Q ss_pred ecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-hhhhcCCCCCc
Q 022277 156 VERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-IAKWIGFSEPK 226 (300)
Q Consensus 156 i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-~r~~~g~~~~~ 226 (300)
++...+...|.+.+ .|++|+++++|++++.++++++.|.++++ ++.||.||+|+|.++. +.+.+|...|.
T Consensus 198 ~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~~pi 270 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALLKPLGVDIPV 270 (416)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchHHHHHHhCCCccc
Confidence 45667777776655 58999999999999887777556777655 6999999999999984 44455655443
No 86
>PLN02661 Putative thiazole synthesis
Probab=99.44 E-value=3e-12 Score=109.31 Aligned_cols=131 Identities=27% Similarity=0.300 Sum_probs=84.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCCCCcee-------eEchhHHHHHHHcCCcHHHHhcccccc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLRTGGTSL-------TLFKNGWSVLDALGVGSDLRSQFLEIK 127 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~~~~~g~~~-------~~~~~~~~~l~~~g~~~~~~~~~~~~~ 127 (300)
..++||+|||||++|+.+|+.|++. |++|+|+||...++.+.... .+.....++++++|+..+.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~-------- 161 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDE-------- 161 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCccc--------
Confidence 4568999999999999999999986 89999999988764211110 0111133445555542100
Q ss_pred ceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEc------C-
Q 022277 128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELV------N- 197 (300)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~------~- 197 (300)
.++ .....+...+.+.|.+++ ++++++.++.++++..+++.+.+|.+. +
T Consensus 162 ------~dg---------------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~ 220 (357)
T PLN02661 162 ------QEN---------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNH 220 (357)
T ss_pred ------CCC---------------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhcc
Confidence 000 001112234444454433 489999999999999887776666641 1
Q ss_pred -C------cEEEcCEEEEcCCCChH
Q 022277 198 -G------TRIYANIVIGCDGIRSP 215 (300)
Q Consensus 198 -g------~~~~ad~vV~A~G~~s~ 215 (300)
+ ..+.|+.||+|||....
T Consensus 221 ~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 221 DTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred CCCCccceeEEECCEEEEcCCCCCc
Confidence 1 25899999999997653
No 87
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.44 E-value=2.7e-12 Score=118.41 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=54.6
Q ss_pred eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCCCChH-hhhhcCCCCCc
Q 022277 155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGIRSP-IAKWIGFSEPK 226 (300)
Q Consensus 155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~~s~-~r~~~g~~~~~ 226 (300)
.++...+...+...+ .|++++++++|+++..+++++++|.+.+ + ..+.|+.||+|+|.|+. +.+..+...+.
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~~i 224 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIRM 224 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCCce
Confidence 577788877776655 5899999999999998877766666532 3 36999999999999984 55555655443
No 88
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.43 E-value=6.7e-12 Score=104.03 Aligned_cols=171 Identities=17% Similarity=0.145 Sum_probs=100.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchh-------------HHHHHHHcCCcHHHHhcc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKN-------------GWSVLDALGVGSDLRSQF 123 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~-------------~~~~l~~~g~~~~~~~~~ 123 (300)
+..||+|||||+-|+++|++|+|+|.+++++|+.+.+...|.+.+.+.- ..+.++.+--.+.+....
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence 5689999999999999999999999999999999987665555433211 112222111101111100
Q ss_pred ccccceEEEcCCC----------------------------ceEE-EecCCCCC---CCcceeeecHHHHHHHHHhcC--
Q 022277 124 LEIKGMAVKSEDG----------------------------RELR-SFGFKDED---ASQEVRAVERRILLETLANQL-- 169 (300)
Q Consensus 124 ~~~~~~~~~~~~~----------------------------~~~~-~~~~~~~~---~~~~~~~i~~~~l~~~l~~~~-- 169 (300)
.......+...+. +... .+++++.. .......+...+-++++...+
T Consensus 86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~ 165 (399)
T KOG2820|consen 86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARE 165 (399)
T ss_pred ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHH
Confidence 0000000000000 0000 11111111 112233456666666666655
Q ss_pred CCCeEEeCCeEEEEEEc--CCceEEEEEcCCcEEEcCEEEEcCCCCh--HhhhhcCCCCCcc
Q 022277 170 PPESVQFSSELAKIETS--GNGVTILELVNGTRIYANIVIGCDGIRS--PIAKWIGFSEPKY 227 (300)
Q Consensus 170 ~g~~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~ad~vV~A~G~~s--~~r~~~g~~~~~~ 227 (300)
.|+.++.+.+|+.++.. ++..+.|.+.+|..+.|+.+|.+.|+|- .++..+++..|..
T Consensus 166 ~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~ 227 (399)
T KOG2820|consen 166 LGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVA 227 (399)
T ss_pred cCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccc
Confidence 38899999999988743 3334669999998899999999999985 3444456555544
No 89
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.42 E-value=8.9e-12 Score=112.99 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=54.3
Q ss_pred eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEE---cCC--cEEEcCEEEEcCCCCh-HhhhhcCCC
Q 022277 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILEL---VNG--TRIYANIVIGCDGIRS-PIAKWIGFS 223 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~---~~g--~~~~ad~vV~A~G~~s-~~r~~~g~~ 223 (300)
..++...+.+.|.+.+ .|++|+++++|++++.++++.+.+.+ .+| .+++||+||+|+|.+| .+++.+|+.
T Consensus 173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 4578889999988777 48999999999999986654344543 234 2689999999999987 577777775
No 90
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.42 E-value=1e-11 Score=116.05 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=51.2
Q ss_pred eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcC--CceEEEEE---cCCc--EEEcCEEEEcCCCChH-hhhhcC
Q 022277 155 AVERRILLETLANQL--PPESVQFSSELAKIETSG--NGVTILEL---VNGT--RIYANIVIGCDGIRSP-IAKWIG 221 (300)
Q Consensus 155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~--~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~-~r~~~g 221 (300)
.++...+...|.+.+ .|++++.+++|+++..++ ++++.|.+ .+++ .+.+|.||+|+|+|+. +++.++
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 467788888887766 589999999999998763 55555555 2343 5899999999999984 666664
No 91
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.42 E-value=6.6e-12 Score=113.66 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=54.2
Q ss_pred eeecHHHHHHHHHhcC-C-----C--CeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh-HhhhhcCC
Q 022277 154 RAVERRILLETLANQL-P-----P--ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS-PIAKWIGF 222 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~-~-----g--~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~~~g~ 222 (300)
..++...+.+.|.+.+ . | ++|+++++|++++.++++.+.|.+++| ++.||.||+|+|.|| .+.+.+|+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGY 282 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCC
Confidence 3577888888776554 2 4 678999999999988666677888887 699999999999998 46666665
No 92
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.41 E-value=1.5e-11 Score=110.14 Aligned_cols=206 Identities=17% Similarity=0.177 Sum_probs=119.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc-CCCCceeeEchhHHHHHHHcCCc---HHHHhcc---------
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL-RTGGTSLTLFKNGWSVLDALGVG---SDLRSQF--------- 123 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~-~~~g~~~~~~~~~~~~l~~~g~~---~~~~~~~--------- 123 (300)
..+||+|||||+.|+-+|..++.+|++|+++|+++.. +..+++..+-+.+++.+++..+. +.+.+..
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 7899999999999999999999999999999999865 34566667766666666554322 1111110
Q ss_pred ccccceEEEc-C--C----------------Cc-----eEEEecCC------CC--------CCCcceeeecHHHHHHHH
Q 022277 124 LEIKGMAVKS-E--D----------------GR-----ELRSFGFK------DE--------DASQEVRAVERRILLETL 165 (300)
Q Consensus 124 ~~~~~~~~~~-~--~----------------~~-----~~~~~~~~------~~--------~~~~~~~~i~~~~l~~~l 165 (300)
.....+.+-. + . +. ....+... +. ...+.-..++...|.-..
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~ 170 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN 170 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence 0000000000 0 0 00 00000000 00 001111234444444443
Q ss_pred HhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCc-----EEEcCEEEEcCCCChH-hhhhcCCCCCcc------ccce
Q 022277 166 ANQL--PPESVQFSSELAKIETSGNGVTILELVNGT-----RIYANIVIGCDGIRSP-IAKWIGFSEPKY------VGHC 231 (300)
Q Consensus 166 ~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~-----~~~ad~vV~A~G~~s~-~r~~~g~~~~~~------~~~~ 231 (300)
...+ .|.+++..++|+++..+++ +++|.+.|.. .+.|+.||.|+|.|+. +++..+...+.. .|.+
T Consensus 171 a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsH 249 (532)
T COG0578 171 ARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSH 249 (532)
T ss_pred HHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceE
Confidence 3333 6899999999999999888 8888887643 5899999999999984 566664332111 2222
Q ss_pred EEEEEeeCCCCCCCCCceEEEEe-CCeEEEEEEcCCCe
Q 022277 232 AYRGLGYYPNGQPFEPKLNYIYG-RGVRAGYVPVSPTK 268 (300)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~ 268 (300)
.+ ++. ..+....+..... ++....++|..+..
T Consensus 250 lV---v~~--~~~~~~a~~~~~~~d~r~~f~iP~~~~~ 282 (532)
T COG0578 250 LV---VDK--KFPINQAVINRCRKDGRIVFAIPYEGKT 282 (532)
T ss_pred EE---ecc--cCCCCceEEeecCCCCceEEEecCCCCE
Confidence 21 222 2222333333333 56677788888775
No 93
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.40 E-value=7.5e-12 Score=112.94 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=53.4
Q ss_pred eeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEE---EcCCc--EEEcCEEEEcCCCCh-HhhhhcCCC
Q 022277 154 RAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILE---LVNGT--RIYANIVIGCDGIRS-PIAKWIGFS 223 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~s-~~r~~~g~~ 223 (300)
..++...+.+.|.+.+ .|++++++++|++++.++++.|.+. +.+++ +++||+||+|+|.+| .+.+.+|+.
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 4578888888887665 3799999999999988734335565 34452 689999999999998 567777765
No 94
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.40 E-value=2.5e-13 Score=121.76 Aligned_cols=148 Identities=21% Similarity=0.260 Sum_probs=35.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCc---eeeEch-hHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT---SLTLFK-NGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~---~~~~~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
||||||||++|++||+.+++.|.+|+|+|+.+.++.... ...+.. .... ...-|+..++................
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~~~~~ 79 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQEDRY 79 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhccccccccc
Confidence 899999999999999999999999999999998753211 111111 1111 11112223332222111000000000
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcC--C-cEEEcCEEEEcC
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN--G-TRIYANIVIGCD 210 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~--g-~~~~ad~vV~A~ 210 (300)
+ .......++..+...|.+.+ .|+++++++.|+++..++++++.|.+.+ | .++.|+++|+||
T Consensus 80 ~-------------~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaT 146 (428)
T PF12831_consen 80 G-------------WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDAT 146 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00001223333333333333 3899999999999999887777777764 3 579999999999
Q ss_pred CCChHhhhhcCC
Q 022277 211 GIRSPIAKWIGF 222 (300)
Q Consensus 211 G~~s~~r~~~g~ 222 (300)
|- ..+....|.
T Consensus 147 G~-g~l~~~aG~ 157 (428)
T PF12831_consen 147 GD-GDLAALAGA 157 (428)
T ss_dssp ------------
T ss_pred cc-ccccccccc
Confidence 94 445444443
No 95
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.5e-11 Score=104.29 Aligned_cols=114 Identities=25% Similarity=0.330 Sum_probs=77.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
..+||+||||||+||++|..++++|++ ++|+|+.. ++ |. .. ...
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~g--g~-~~-------------~~~------------------ 46 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PG--GQ-LT-------------KTT------------------ 46 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cC--Cc-cc-------------cce------------------
Confidence 568999999999999999999999999 66666553 21 11 00 000
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (300)
.+..+ +.....+.-.+|.+.+.+.+ .++++.. ..|.+++..++ ...|.+.+++ ++|+.||+|+|..
T Consensus 47 --~veny-------pg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~ 114 (305)
T COG0492 47 --DVENY-------PGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAG 114 (305)
T ss_pred --eecCC-------CCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eEEEEECCCe-EEEeEEEECcCCc
Confidence 00000 11111244557777777766 5777776 67777776655 5668899987 9999999999987
Q ss_pred hHhh
Q 022277 214 SPIA 217 (300)
Q Consensus 214 s~~r 217 (300)
....
T Consensus 115 ~~~~ 118 (305)
T COG0492 115 ARKL 118 (305)
T ss_pred ccCC
Confidence 6543
No 96
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.38 E-value=3.4e-11 Score=106.94 Aligned_cols=121 Identities=17% Similarity=0.051 Sum_probs=72.3
Q ss_pred eecHHHHHHHHHhcC--CC-CeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh-hhhcC-CCCCcccc
Q 022277 155 AVERRILLETLANQL--PP-ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI-AKWIG-FSEPKYVG 229 (300)
Q Consensus 155 ~i~~~~l~~~l~~~~--~g-~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~-r~~~g-~~~~~~~~ 229 (300)
.++...+.+.|.+.+ .| ..+..++.++.++.+. ..+.|.+.+|+ +.||.||+|+|.++.. ....+ ...+...-
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~~~~~~~~p~ 229 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAGELAATLGELPLPLRPV 229 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcCCCcCccccc
Confidence 466778888887766 35 4667799999998764 56779999986 9999999999999754 44445 33232221
Q ss_pred ceEEEEEeeCCCCCCC-CCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277 230 HCAYRGLGYYPNGQPF-EPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP 278 (300)
Q Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 278 (300)
..... ..+....... ..............++.|..++++.+.......
T Consensus 230 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~~~~~ 278 (387)
T COG0665 230 RGQAL-TTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEG 278 (387)
T ss_pred cceEE-EecCCCccccccccceEEEecCCceEEEEcCCCcEEEeeccccc
Confidence 21111 1222211111 111023333444455678778877765554443
No 97
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.37 E-value=3.7e-11 Score=105.94 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=44.6
Q ss_pred eeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 154 RAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
..++...+...|.+.+ .|++++.+++|++++.. .|.+++|+ +.||.||+|+|.++.
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~-----~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG-----TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC-----eEEeCCCc-EEeCEEEECCCCChh
Confidence 3567788888887654 38999999999999642 37777774 789999999999874
No 98
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.36 E-value=1.1e-11 Score=106.24 Aligned_cols=111 Identities=26% Similarity=0.387 Sum_probs=74.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE 138 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 138 (300)
+||+|||||++|+++|..|++.|++|+|+|+.+ + +|. +.... .
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~--gg~-~~~~~---------------------------------~ 43 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-P--GGQ-LTTTT---------------------------------E 43 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-C--Ccc-eeecc---------------------------------c
Confidence 589999999999999999999999999999886 2 221 00000 0
Q ss_pred EEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
+..++ + ....+...++.+.+.+.+ .++++++ ++|++++.+++. +.|.+.++..+.+|.||+|+|....
T Consensus 44 ~~~~~------~-~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~-~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 44 VENYP------G-FPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRP-FKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred ccccC------C-CCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCe-eEEEeCCCCEEEeCEEEECCCCCcc
Confidence 00000 0 000122223444443333 3788888 899999887655 5577888888999999999998653
No 99
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.35 E-value=1.9e-11 Score=111.24 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=83.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCc-----eeeEchh-----------HHHHHHH----cC-C
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT-----SLTLFKN-----------GWSVLDA----LG-V 115 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~-----~~~~~~~-----------~~~~l~~----~g-~ 115 (300)
..+||||||+|++|+++|+.+++.|.+|+|+||.+....+|. ++..... ..+.++. .+ .
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 568999999999999999999999999999999874211111 1110000 0111111 11 0
Q ss_pred -cHHHHhcccc--ccceEEEcCCCceEEEecCCCC--CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC
Q 022277 116 -GSDLRSQFLE--IKGMAVKSEDGRELRSFGFKDE--DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN 188 (300)
Q Consensus 116 -~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~ 188 (300)
...+...... ...+.+....|..+........ ........-.-..+.+.|.+.+ .|++++++++|+++..+++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g 162 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG 162 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC
Confidence 1111110000 0000000111111100000000 0000000011234555555544 4899999999999988777
Q ss_pred ceEEEEEc--CC--cEEEcCEEEEcCCCChH
Q 022277 189 GVTILELV--NG--TRIYANIVIGCDGIRSP 215 (300)
Q Consensus 189 ~~~~v~~~--~g--~~~~ad~vV~A~G~~s~ 215 (300)
++++|.+. ++ ..+.++.||+|+|..+.
T Consensus 163 ~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 163 RFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred eEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 76666663 33 36899999999998654
No 100
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.35 E-value=8.9e-12 Score=113.02 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=47.9
Q ss_pred eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
..+++.++.+.|.+.+ .|++|+.+++|++++. ++. +.|.+.+| ++.||.||+|+|.++.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~-~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP-AVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc-eEEEeCCc-EEECCEEEEccccccc
Confidence 4578888988888766 4899999999999975 333 55788777 6999999999999864
No 101
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.33 E-value=1.3e-11 Score=99.45 Aligned_cols=138 Identities=23% Similarity=0.215 Sum_probs=82.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC--------CCc----eeeEchhHHHHHH------HcCCcHHHH
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--------GGT----SLTLFKNGWSVLD------ALGVGSDLR 120 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~--------~g~----~~~~~~~~~~~l~------~~g~~~~~~ 120 (300)
.+|+|||+|++|++||+.|+..|++|+|+||....+. ++. +..+.++...+++ +-|+.+...
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 4799999999999999999999999999999986532 111 1223333222222 222211110
Q ss_pred hccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC-c
Q 022277 121 SQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG-T 199 (300)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~ 199 (300)
. .++...+.. .+......+ .........|.+.|+.. .+|.++++|+.+...++ .|.+.+++| +
T Consensus 82 ~--------~~~~~~~~~---~~~~~d~~p-yvg~pgmsalak~LAtd---L~V~~~~rVt~v~~~~~-~W~l~~~~g~~ 145 (331)
T COG3380 82 P--------AVWTFTGDG---SPPRGDEDP-YVGEPGMSALAKFLATD---LTVVLETRVTEVARTDN-DWTLHTDDGTR 145 (331)
T ss_pred c--------cccccccCC---CCCCCCCCc-cccCcchHHHHHHHhcc---chhhhhhhhhhheecCC-eeEEEecCCCc
Confidence 0 011111100 001111111 22233445666666554 48999999999998855 488999776 4
Q ss_pred EEEcCEEEEcCCC
Q 022277 200 RIYANIVIGCDGI 212 (300)
Q Consensus 200 ~~~ad~vV~A~G~ 212 (300)
...+|.||+|.=+
T Consensus 146 ~~~~d~vvla~PA 158 (331)
T COG3380 146 HTQFDDVVLAIPA 158 (331)
T ss_pred ccccceEEEecCC
Confidence 6789999988643
No 102
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.32 E-value=2.7e-10 Score=97.15 Aligned_cols=162 Identities=20% Similarity=0.217 Sum_probs=104.6
Q ss_pred ccCCCCcEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCcCCCC-ceeeEchhHHHHHHHcCCcHHHHhc----
Q 022277 54 ADVRKEDIVIVGAGIAGLATAVSLQRL------GIGSLVIEQADSLRTGG-TSLTLFKNGWSVLDALGVGSDLRSQ---- 122 (300)
Q Consensus 54 ~~~~~~dVvIIGgG~aGl~~A~~L~~~------G~~V~viE~~~~~~~~g-~~~~~~~~~~~~l~~~g~~~~~~~~---- 122 (300)
+....+||+||||||+||++|+.|.+. .++|.|+|+...++..- .+--+.|.++..| ..+..+.
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL-----~P~wke~~apl 146 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDEL-----LPDWKEDGAPL 146 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhh-----CcchhhcCCcc
Confidence 344679999999999999999999753 46899999999874321 1223344444332 0111111
Q ss_pred cccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCc-eEEEEEcC--
Q 022277 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNG-VTILELVN-- 197 (300)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~-~~~v~~~~-- 197 (300)
..+...-.+....+.....++..........+.++-.++.++|-+++ -|++|..+..+.++..++++ +.+|.++|
T Consensus 147 ~t~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~G 226 (621)
T KOG2415|consen 147 NTPVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVG 226 (621)
T ss_pred cccccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccc
Confidence 12222222222233333333333233344467888899999998877 48999999999888877654 55676653
Q ss_pred -------------CcEEEcCEEEEcCCCChHhhhhc
Q 022277 198 -------------GTRIYANIVIGCDGIRSPIAKWI 220 (300)
Q Consensus 198 -------------g~~~~ad~vV~A~G~~s~~r~~~ 220 (300)
|-.+.|+.-|.|.|.+..+.+++
T Consensus 227 I~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi 262 (621)
T KOG2415|consen 227 ISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQI 262 (621)
T ss_pred ccCCCCccccccccceecceeEEEeccccchhHHHH
Confidence 23689999999999988776655
No 103
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.31 E-value=2.9e-11 Score=107.51 Aligned_cols=155 Identities=25% Similarity=0.307 Sum_probs=86.4
Q ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-----CCceeeEchh--HHHHHHHcCCcHH-HH---hccccccceE
Q 022277 62 VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLFKN--GWSVLDALGVGSD-LR---SQFLEIKGMA 130 (300)
Q Consensus 62 vIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-----~g~~~~~~~~--~~~~l~~~g~~~~-~~---~~~~~~~~~~ 130 (300)
+|||||++|+++|+.|++.|.+|+|+||++.++. ++..+.+... ..++++..+-... +. ........+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999987642 1111222111 1112222211000 00 0000000011
Q ss_pred EEcCCCceEEEecCCCCCCCcce-eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277 131 VKSEDGRELRSFGFKDEDASQEV-RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207 (300)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV 207 (300)
+....|..+.... .+..+ .......+.+.|.+.+ .+++++++++|+++..+++. +.|.+ +++.+.+|.||
T Consensus 81 ~~~~~Gv~~~~~~-----~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~~v~~-~~~~i~ad~VI 153 (400)
T TIGR00275 81 FFESLGLELKVEE-----DGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNG-FGVET-SGGEYEADKVI 153 (400)
T ss_pred HHHHcCCeeEEec-----CCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCe-EEEEE-CCcEEEcCEEE
Confidence 1111111111100 00001 0112345555555554 48999999999999876554 55666 45579999999
Q ss_pred EcCCCCh-----------HhhhhcCCC
Q 022277 208 GCDGIRS-----------PIAKWIGFS 223 (300)
Q Consensus 208 ~A~G~~s-----------~~r~~~g~~ 223 (300)
+|+|.+| .+.+.+|..
T Consensus 154 lAtG~~s~p~~gs~G~g~~la~~lG~~ 180 (400)
T TIGR00275 154 LATGGLSYPQLGSTGDGYEIAESLGHT 180 (400)
T ss_pred ECCCCcccCCCCCCcHHHHHHHHCCCC
Confidence 9999876 466677765
No 104
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.31 E-value=2.9e-11 Score=110.19 Aligned_cols=143 Identities=18% Similarity=0.229 Sum_probs=86.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-CCCceeeEc---hh-HHHHHHHcCC-cHHHHhccccccce--E
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLF---KN-GWSVLDALGV-GSDLRSQFLEIKGM--A 130 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~-~~g~~~~~~---~~-~~~~l~~~g~-~~~~~~~~~~~~~~--~ 130 (300)
+||+|||||++|+++|..+++.|.+|+|+|++.... ..++..... .. ..+.++.+|- ...+. ....+ .
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~----d~~~i~~r 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAA----DKAGLQFR 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHH----Hhhceehe
Confidence 699999999999999999999999999999975321 111100110 00 1122222221 11110 00011 1
Q ss_pred EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEc-CCceEEEEEcCCcEEEcCEE
Q 022277 131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETS-GNGVTILELVNGTRIYANIV 206 (300)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~~ad~v 206 (300)
+.+... ..........+++..+.+.+.+.+ +++.++. .+|+++..+ ++.+.+|.+.+|..+.|+.|
T Consensus 77 ~ln~sk---------gpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~V 146 (617)
T TIGR00136 77 VLNSSK---------GPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGLKFRAKAV 146 (617)
T ss_pred ecccCC---------CCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCCEEECCEE
Confidence 111000 000111224678888888886655 4677765 467777665 56677899999989999999
Q ss_pred EEcCCCChH
Q 022277 207 IGCDGIRSP 215 (300)
Q Consensus 207 V~A~G~~s~ 215 (300)
|+|+|.+..
T Consensus 147 ILATGtfL~ 155 (617)
T TIGR00136 147 IITTGTFLR 155 (617)
T ss_pred EEccCcccC
Confidence 999999963
No 105
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.31 E-value=4.3e-11 Score=107.31 Aligned_cols=88 Identities=16% Similarity=0.108 Sum_probs=72.3
Q ss_pred eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhhhc-CCCCCccccc
Q 022277 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFSEPKYVGH 230 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~-g~~~~~~~~~ 230 (300)
..+++..+...|+..+ .|+.|..++.|+++....++.++|++..| .+++..||.|+|.|...-..+ |.+.|-+.-+
T Consensus 182 G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~ 260 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKVPLVPMH 260 (856)
T ss_pred cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCCcccceeee
Confidence 3578888888887766 58999999999999988887788999999 599999999999998765555 8888888877
Q ss_pred eEEEEEeeCCCC
Q 022277 231 CAYRGLGYYPNG 242 (300)
Q Consensus 231 ~~~~~~~~~~~~ 242 (300)
++|..+...+..
T Consensus 261 H~YvvT~~IeGi 272 (856)
T KOG2844|consen 261 HAYVVTSRIEGV 272 (856)
T ss_pred eeEEEecccCCc
Confidence 777765555443
No 106
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.30 E-value=3.4e-11 Score=110.27 Aligned_cols=38 Identities=37% Similarity=0.587 Sum_probs=35.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
..+||||||+|.+|+++|+.+++.|.+|+||||.+..+
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~G 97 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG 97 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 57899999999999999999999999999999998653
No 107
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=6.1e-11 Score=111.10 Aligned_cols=37 Identities=41% Similarity=0.597 Sum_probs=33.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..+||+|||||.|||++|+.+++.|.+|+|+||...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 4689999999999999999999999999999986654
No 108
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.29 E-value=4.6e-11 Score=107.26 Aligned_cols=155 Identities=26% Similarity=0.356 Sum_probs=81.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC----CCceeeEch----------h-HH----HHHHHcC-C-cHH
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT----GGTSLTLFK----------N-GW----SVLDALG-V-GSD 118 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~----~g~~~~~~~----------~-~~----~~l~~~g-~-~~~ 118 (300)
||||||+|.+||++|+.++++|.+|+|+||.+..+. .+....... . .. +.++... . ..+
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 899999999999999999999999999999987432 111111111 1 11 1112211 1 111
Q ss_pred HHhcc----------ccccceEEEc-CCCceEEEecCCCCCCC--------c--ceeeecHHHHHHHHHhcC--CCCeEE
Q 022277 119 LRSQF----------LEIKGMAVKS-EDGRELRSFGFKDEDAS--------Q--EVRAVERRILLETLANQL--PPESVQ 175 (300)
Q Consensus 119 ~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~--~~~~i~~~~l~~~l~~~~--~g~~i~ 175 (300)
+.... ....++.+.. ..+. ............ . ......-..+.+.|.+.+ .+++|+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~ 159 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGP-FAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIR 159 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSS-BCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEE
T ss_pred hhhhhhhcccceehhhhhhccccccccccc-ccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeee
Confidence 11110 0011222222 1110 000000000001 0 011123345666666655 479999
Q ss_pred eCCeEEEEEEcCCceEEEEEc---CCc--EEEcCEEEEcCCCChH
Q 022277 176 FSSELAKIETSGNGVTILELV---NGT--RIYANIVIGCDGIRSP 215 (300)
Q Consensus 176 ~~~~v~~i~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G~~s~ 215 (300)
++++++++..+++++.+|... +|+ .+.|+.||+|+|..+.
T Consensus 160 ~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 160 FNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp ESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred ccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 999999999988888878776 444 6889999999999885
No 109
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.29 E-value=4.2e-11 Score=81.36 Aligned_cols=80 Identities=31% Similarity=0.511 Sum_probs=62.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCceE
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGREL 139 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (300)
+|+|||||+.|+.+|..|++.|.+|+|+++.+.+..... .
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~------------------~---------------------- 40 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFD------------------P---------------------- 40 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSS------------------H----------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcC------------------H----------------------
Confidence 589999999999999999999999999999998731100 0
Q ss_pred EEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC
Q 022277 140 RSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG 198 (300)
Q Consensus 140 ~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g 198 (300)
-.+..+.+.|.+. |+++++++.+++++.+++++. |+++||
T Consensus 41 ----------------~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~~~~~-V~~~~g 80 (80)
T PF00070_consen 41 ----------------DAAKILEEYLRKR--GVEVHTNTKVKEIEKDGDGVE-VTLEDG 80 (80)
T ss_dssp ----------------HHHHHHHHHHHHT--TEEEEESEEEEEEEEETTSEE-EEEETS
T ss_pred ----------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCEEE-EEEecC
Confidence 1122344455444 999999999999999988844 888886
No 110
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.28 E-value=6.3e-12 Score=114.77 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=78.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC-CCc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE-DGR 137 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 137 (300)
.+|+|||||++||++|..|.+.|++++++||++.++... ....+. .-|. ..-+........ .-.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W---~~~~~~-----~~g~-------~~~y~sl~~n~sk~~~ 66 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLW---RYTENP-----EDGR-------SSVYDSLHTNTSKEMM 66 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGG---CHSTTC-----CCSE-------GGGSTT-B-SS-GGGS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccC---eeCCcC-----CCCc-------cccccceEEeeCchHh
Confidence 589999999999999999999999999999999884211 100000 0000 000000000000 000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCC--C--CeEEeCCeEEEEEEcCC----ceEEEEEcCCc---EEEcCEE
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLP--P--ESVQFSSELAKIETSGN----GVTILELVNGT---RIYANIV 206 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~--g--~~i~~~~~v~~i~~~~~----~~~~v~~~~g~---~~~ad~v 206 (300)
....++++.. ......+.++.+.|.+.+. + -.|+++++|+++++.++ +.|.|++.++. +-.+|.|
T Consensus 67 ~fsdfp~p~~----~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~V 142 (531)
T PF00743_consen 67 AFSDFPFPED----YPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAV 142 (531)
T ss_dssp CCTTS-HCCC----CSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEE
T ss_pred cCCCcCCCCC----CCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeE
Confidence 0011122111 1123566777777766552 3 36999999999998654 46888886542 4568999
Q ss_pred EEcCCCChHh
Q 022277 207 IGCDGIRSPI 216 (300)
Q Consensus 207 V~A~G~~s~~ 216 (300)
|+|+|.++..
T Consensus 143 vvatG~~~~P 152 (531)
T PF00743_consen 143 VVATGHFSKP 152 (531)
T ss_dssp EEEE-SSSCE
T ss_pred EEcCCCcCCC
Confidence 9999998743
No 111
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.28 E-value=7.6e-11 Score=108.39 Aligned_cols=112 Identities=28% Similarity=0.389 Sum_probs=78.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
...+||+|||||++|+++|..|++.|++|+|+|+. + +|.... ..++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~--GG~~~~----------~~~~~------------------- 255 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--F--GGQVLD----------TMGIE------------------- 255 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C--CCeeec----------cCccc-------------------
Confidence 34689999999999999999999999999999864 2 232100 00000
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (300)
.+ .........++.+.+.+.+ .+++++++++|+++...++. +.|.+.+|..+.+|.||+|+|..
T Consensus 256 -----~~--------~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~-~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 256 -----NF--------ISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGL-IEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred -----cc--------CCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCe-EEEEECCCCEEEcCEEEECCCCC
Confidence 00 0001123335555555444 37899999999999887654 55888888889999999999986
Q ss_pred h
Q 022277 214 S 214 (300)
Q Consensus 214 s 214 (300)
.
T Consensus 322 ~ 322 (517)
T PRK15317 322 W 322 (517)
T ss_pred c
Confidence 5
No 112
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.24 E-value=1.4e-10 Score=106.48 Aligned_cols=112 Identities=26% Similarity=0.370 Sum_probs=76.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
...+||+|||||++|+++|..|++.|++|+|+|.. + +|.... ..++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~--GG~~~~----------~~~~~------------------- 256 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--I--GGQVKD----------TVGIE------------------- 256 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C--CCcccc----------CcCcc-------------------
Confidence 45799999999999999999999999999999753 2 221000 00000
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (300)
.+. . .......++.+.+.+.+ .+++++.+++|+++..+++. +.+.+.+|..+.+|.+|+|+|..
T Consensus 257 -----~~~------~--~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~-~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 257 -----NLI------S--VPYTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGL-IVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred -----ccc------c--cCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCC
Confidence 000 0 00012234444444333 38899999999999876654 55778888889999999999986
Q ss_pred h
Q 022277 214 S 214 (300)
Q Consensus 214 s 214 (300)
.
T Consensus 323 ~ 323 (515)
T TIGR03140 323 W 323 (515)
T ss_pred c
Confidence 4
No 113
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=2e-10 Score=106.42 Aligned_cols=159 Identities=20% Similarity=0.168 Sum_probs=84.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEc-----hhHHHH-HHH-c--C--C-cHH
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF-----KNGWSV-LDA-L--G--V-GSD 118 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~-----~~~~~~-l~~-~--g--~-~~~ 118 (300)
..+||+|||+|.+||++|+.+++.|.+|+|+||....+. ++....+. .++.+. ++. + + + ..+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 568999999999999999999999999999999864321 11110010 111111 110 0 0 0 001
Q ss_pred HHhcc----------ccccceEEEc-CCCceEEEecCCCCCCCcceeee--cHHHHHHHHHhcC--CCCeEEeCCeEEEE
Q 022277 119 LRSQF----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL--PPESVQFSSELAKI 183 (300)
Q Consensus 119 ~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i--~~~~l~~~l~~~~--~g~~i~~~~~v~~i 183 (300)
+.... ....++.+.. .++..... .+.........+.. .-..+.+.|.+.+ .++++++++.++++
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~-~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~L 162 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVR-YFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEecc-CCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEE
Confidence 00000 0001122211 11111000 00000000000000 1224555555544 48999999999999
Q ss_pred EEcCCceEEEEEc---CCc--EEEcCEEEEcCCCChHh
Q 022277 184 ETSGNGVTILELV---NGT--RIYANIVIGCDGIRSPI 216 (300)
Q Consensus 184 ~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G~~s~~ 216 (300)
..+++.+.+|... +|+ .+.|+.||+|+|..+.+
T Consensus 163 i~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 163 VTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred EEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 9877777777654 332 57899999999998743
No 114
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.22 E-value=1.6e-10 Score=107.78 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=83.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCc-----eee--Ech-hH-HHHHHHc-----CCcH-HH
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGT-----SLT--LFK-NG-WSVLDAL-----GVGS-DL 119 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~-----~~~--~~~-~~-~~~l~~~-----g~~~-~~ 119 (300)
..+||+|||||.|||++|+.+++. |.+|+|+||....+.+.. +.. +.. .. .+.++.+ ++.+ ++
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 458999999999999999999998 999999999875432210 111 111 01 1111110 1110 01
Q ss_pred Hhc----------cccccceEEEc-CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEE
Q 022277 120 RSQ----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIET 185 (300)
Q Consensus 120 ~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~ 185 (300)
... .....++.+.. ..+.... . +..........+.+.|.+.+ .++++++++.|+++..
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~-----~---g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~ 161 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVR-----R---GRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV 161 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCCCccc-----c---CCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE
Confidence 000 00111222221 1111100 0 00000123334555555444 2499999999999987
Q ss_pred cCCceEEEE---EcCCc--EEEcCEEEEcCCCChH
Q 022277 186 SGNGVTILE---LVNGT--RIYANIVIGCDGIRSP 215 (300)
Q Consensus 186 ~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~s~ 215 (300)
+++.+++|. ..+++ .+.|+.||+|+|.++.
T Consensus 162 ~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 162 DDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred eCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 666665553 23453 6899999999998774
No 115
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.22 E-value=2.7e-10 Score=102.35 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=41.0
Q ss_pred HHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEE-EcCCc--EEEcCEEEEcCCCChH
Q 022277 160 ILLETLANQL---PPESVQFSSELAKIETSGNGVTILE-LVNGT--RIYANIVIGCDGIRSP 215 (300)
Q Consensus 160 ~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~-~~~g~--~~~ad~vV~A~G~~s~ 215 (300)
.+.+.|.+.+ .+++|+++++++++..+++.+++|. ..+++ .+.|+.||+|+|..+.
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 4555555443 3899999999999987766666544 33444 5899999999998654
No 116
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.22 E-value=2.4e-10 Score=103.67 Aligned_cols=157 Identities=13% Similarity=0.155 Sum_probs=80.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-----CCceeeEc-hhHH-----HHHHHc-CC-cHHHHhcccc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLF-KNGW-----SVLDAL-GV-GSDLRSQFLE 125 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-----~g~~~~~~-~~~~-----~~l~~~-g~-~~~~~~~~~~ 125 (300)
+||+|||||++||++|+.+++.|.+|+|+||....+. +|....+. .++. +.++.- ++ ..++......
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 6999999999999999999999999999999864321 11111111 1111 111110 11 0111100000
Q ss_pred --ccceEEEcCCCceEEEecCC-CCCCCccee--eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC
Q 022277 126 --IKGMAVKSEDGRELRSFGFK-DEDASQEVR--AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG 198 (300)
Q Consensus 126 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g 198 (300)
...+.+....|-.+...... ....+.... ...-..+.+.|.+.+ .+++++.+ .++.+..+++.+.+|.. ++
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g 159 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DG 159 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CC
Confidence 00000000001000000000 000000000 011234566665555 47888876 78888776666666666 45
Q ss_pred cEEEcCEEEEcCCCChHhh
Q 022277 199 TRIYANIVIGCDGIRSPIA 217 (300)
Q Consensus 199 ~~~~ad~vV~A~G~~s~~r 217 (300)
..+.++.||+|+|.++...
T Consensus 160 ~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 160 ELLKFDATVIATGGFSGLF 178 (466)
T ss_pred EEEEeCeEEECCCcCcCCC
Confidence 6799999999999998764
No 117
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.21 E-value=3.6e-10 Score=105.17 Aligned_cols=157 Identities=26% Similarity=0.263 Sum_probs=83.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEc---h-hHHHHH-HH-----cCCc-HHHHhc
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF---K-NGWSVL-DA-----LGVG-SDLRSQ 122 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~---~-~~~~~l-~~-----~g~~-~~~~~~ 122 (300)
||+|||||++|+++|+.+++.|.+|+|+||....+. ++....+. + ...+.+ .. -++. .++...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 899999999999999999999999999999875321 11111111 1 111111 10 1111 111000
Q ss_pred c----------ccccceEEEc-CCCceEEEecCCCCCCCcceeee--cHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcC
Q 022277 123 F----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL--PPESVQFSSELAKIETSG 187 (300)
Q Consensus 123 ~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i--~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~ 187 (300)
. ....++.+.. .++... ...+.........+.. .-..+...|.+.+ .|+++++++.++++..++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~-~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~ 159 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIA-QRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD 159 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEe-eccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC
Confidence 0 0011122211 112110 0011000000000000 1123444444433 389999999999998876
Q ss_pred CceEEEEE---cCCc--EEEcCEEEEcCCCChHhh
Q 022277 188 NGVTILEL---VNGT--RIYANIVIGCDGIRSPIA 217 (300)
Q Consensus 188 ~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~r 217 (300)
+.+.+|.. .+|+ .+.|+.||+|+|..+.+.
T Consensus 160 g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~ 194 (566)
T TIGR01812 160 GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIY 194 (566)
T ss_pred CEEEEEEEEECCCCcEEEEECCeEEECCCcccCCC
Confidence 66655544 3554 589999999999988653
No 118
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=2.5e-10 Score=106.21 Aligned_cols=159 Identities=22% Similarity=0.352 Sum_probs=84.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCC------CCceeeEc----hhHHHH-----HHH-cCCc-H
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRT------GGTSLTLF----KNGWSV-----LDA-LGVG-S 117 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~------~g~~~~~~----~~~~~~-----l~~-~g~~-~ 117 (300)
..+||+|||||.+||+||+.+++. |.+|+|+||....+. +|-..... .++.+. ++. .++. .
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~ 81 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 468999999999999999999987 489999999865331 11111110 111111 110 0110 1
Q ss_pred HHHhcc----------ccccceEEEc-CCCceEEEecCCCCCCCcceeeec--HHHHHHHHHhcC--CCCeEEeCCeEEE
Q 022277 118 DLRSQF----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVE--RRILLETLANQL--PPESVQFSSELAK 182 (300)
Q Consensus 118 ~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~--~~~l~~~l~~~~--~g~~i~~~~~v~~ 182 (300)
++.... ....++.+.. .++.... ..+.........+..+ -..+.+.|.+.+ .++++++++.|++
T Consensus 82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~-~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~ 160 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQ-RAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEee-ccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEE
Confidence 110000 0011222221 1121110 0000000000001111 134556665544 4899999999999
Q ss_pred EEEcCCceEEEE---EcCCc--EEEcCEEEEcCCCChHh
Q 022277 183 IETSGNGVTILE---LVNGT--RIYANIVIGCDGIRSPI 216 (300)
Q Consensus 183 i~~~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~s~~ 216 (300)
+..+++.+.++. ..+|+ .+.|+.||+|+|.++.+
T Consensus 161 L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 161 LILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 987766655554 34554 58999999999998754
No 119
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.20 E-value=7.5e-10 Score=103.11 Aligned_cols=159 Identities=21% Similarity=0.246 Sum_probs=85.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC---CcEEEEecCCCcCC------CCceeeEch---hHHH-----HHHH-cCCc-H
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLG---IGSLVIEQADSLRT------GGTSLTLFK---NGWS-----VLDA-LGVG-S 117 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G---~~V~viE~~~~~~~------~g~~~~~~~---~~~~-----~l~~-~g~~-~ 117 (300)
..+||+|||||.|||++|+.+++.| .+|+|+||....+. +|....+.+ ++.+ .++. -++. .
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~ 83 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQ 83 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCH
Confidence 5689999999999999999999998 89999999875432 111111221 1111 1111 0110 1
Q ss_pred HHHhc----------cccccceEEEc-CCCceEEEecCCCCCCCcceeee--cHHHHHHHHHhcC---CCCeEEeCCeEE
Q 022277 118 DLRSQ----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL---PPESVQFSSELA 181 (300)
Q Consensus 118 ~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i--~~~~l~~~l~~~~---~g~~i~~~~~v~ 181 (300)
++... .....++.+.. .+|.... ..+.........+.. .-..+.+.|.+.+ .++++++++.++
T Consensus 84 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~-~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~ 162 (577)
T PRK06069 84 DAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQ-RPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVT 162 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEee-eecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEE
Confidence 11000 00111222322 2222111 111100000000000 1123555555433 478999999999
Q ss_pred EEEEcCCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277 182 KIETSGNGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (300)
Q Consensus 182 ~i~~~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~ 216 (300)
++..+++.+.+|.. .+|+ .+.|+.||+|||..+.+
T Consensus 163 ~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 163 SLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL 202 (577)
T ss_pred EEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence 99877666555543 3554 58999999999998754
No 120
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.20 E-value=3e-10 Score=103.77 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=84.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEch-hHH-----HHHHHc-CC-cHHHHhcc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLFK-NGW-----SVLDAL-GV-GSDLRSQF 123 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~~-~~~-----~~l~~~-g~-~~~~~~~~ 123 (300)
.+||+|||||.+||++|+.+++.|. |+|+||.+..+. ++......+ ++. ++++.- ++ ..++....
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999998 999999965321 111111111 111 111110 11 01110000
Q ss_pred ----------ccccceEEEc-CCCceEEEecCCCCCCCcceee--ecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcC
Q 022277 124 ----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRA--VERRILLETLANQL---PPESVQFSSELAKIETSG 187 (300)
Q Consensus 124 ----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~ 187 (300)
....++.+.. ..+....... .........+. ..-..+.+.|.+.+ +++++++++.|+++..++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~-gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~ 159 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTRE-GGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET 159 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCC-CCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC
Confidence 0001122211 1111000000 00000000000 12245666666554 479999999999998776
Q ss_pred CceEEEEEcC-C--cEEEcCEEEEcCCCChHhh
Q 022277 188 NGVTILELVN-G--TRIYANIVIGCDGIRSPIA 217 (300)
Q Consensus 188 ~~~~~v~~~~-g--~~~~ad~vV~A~G~~s~~r 217 (300)
+.+.+|.+.+ + ..+.++.||+|+|.++.+.
T Consensus 160 g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~ 192 (488)
T TIGR00551 160 GRVVGVWVWNRETVETCHADAVVLATGGAGKLY 192 (488)
T ss_pred CEEEEEEEEECCcEEEEEcCEEEECCCcccCCC
Confidence 6666565543 3 3689999999999998753
No 121
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.19 E-value=5.1e-10 Score=103.30 Aligned_cols=37 Identities=38% Similarity=0.611 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..+||+|||+|.|||++|+.+++.|.+|+|+||....
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 5689999999999999999999999999999998754
No 122
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=8.7e-10 Score=102.01 Aligned_cols=56 Identities=21% Similarity=0.125 Sum_probs=41.7
Q ss_pred HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCc-eEEEEE---cCCc--EEEcCEEEEcCCCChH
Q 022277 160 ILLETLANQL--PPESVQFSSELAKIETSGNG-VTILEL---VNGT--RIYANIVIGCDGIRSP 215 (300)
Q Consensus 160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~-~~~v~~---~~g~--~~~ad~vV~A~G~~s~ 215 (300)
.+.+.|.+.+ .++++++++.++++..++++ +++|.. .+|+ .+.|+.||+|+|..+.
T Consensus 135 ~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 135 EMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 4555555544 48999999999999877665 666543 3554 5899999999999774
No 123
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.17 E-value=9e-10 Score=102.44 Aligned_cols=57 Identities=25% Similarity=0.198 Sum_probs=42.6
Q ss_pred HHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEE---EcCCc--EEEcCEEEEcCCCChHh
Q 022277 160 ILLETLANQL---PPESVQFSSELAKIETSGNGVTILE---LVNGT--RIYANIVIGCDGIRSPI 216 (300)
Q Consensus 160 ~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~s~~ 216 (300)
.+...|.+.+ ++++++.++.++++..+++.+.+|. ..+|+ .+.|+.||+|||..+.+
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 4555555544 4789999999999988776655543 34563 68999999999998865
No 124
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.17 E-value=4.5e-10 Score=101.45 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=41.7
Q ss_pred HHHHHHHHhcC--CCCeEEeCCeEEEEEEcC-CceEEEEEc--CCc--EEEcCEEEEcCCCChH
Q 022277 159 RILLETLANQL--PPESVQFSSELAKIETSG-NGVTILELV--NGT--RIYANIVIGCDGIRSP 215 (300)
Q Consensus 159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~-~~~~~v~~~--~g~--~~~ad~vV~A~G~~s~ 215 (300)
..+.+.|.+.+ .|++++++++|+++..++ +.+++|.+. +++ .+.++.||+|+|.++.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 35666665555 489999999999999864 455555543 343 4789999999999876
No 125
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.17 E-value=1.9e-09 Score=89.82 Aligned_cols=38 Identities=34% Similarity=0.572 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCcCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLRT 95 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~----G~~V~viE~~~~~~~ 95 (300)
+.||+|||||..|.++|+.|.++ |++|+|+||++....
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq 127 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ 127 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence 57999999999999999999763 799999999986543
No 126
>PRK07121 hypothetical protein; Validated
Probab=99.15 E-value=1.2e-09 Score=100.12 Aligned_cols=37 Identities=35% Similarity=0.546 Sum_probs=34.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..+||||||+|.+|+++|+.+++.|.+|+|+||.+..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4689999999999999999999999999999998864
No 127
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.15 E-value=1.3e-09 Score=101.94 Aligned_cols=37 Identities=35% Similarity=0.466 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..+||+|||+|.|||++|+.+++.|.+|+|+||....
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~ 85 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 85 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 4589999999999999999999999999999998754
No 128
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=1.8e-09 Score=101.18 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..+||+|||||.|||++|+.+++.|.+|+|+||....
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 4689999999999999999999999999999998653
No 129
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.15 E-value=4.7e-10 Score=103.94 Aligned_cols=111 Identities=20% Similarity=0.323 Sum_probs=72.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
..+||+|||||++|+++|..|+++|++|+|+|+.. . +|.. .... .+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~--GG~~-~~~~-------------~i----------------- 48 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-F--GGQI-TITS-------------EV----------------- 48 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-C--CceE-Eecc-------------cc-----------------
Confidence 45899999999999999999999999999999864 2 2221 0000 00
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s 214 (300)
. . ...........+.+.+.+.+ .+++++ +++|+++..+++. +.|.+.++ .+.++.||+|+|++.
T Consensus 49 ---~--~------~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~-~~V~~~~g-~~~a~~lVlATGa~p 114 (555)
T TIGR03143 49 ---V--N------YPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDI-KTIKTARG-DYKTLAVLIATGASP 114 (555)
T ss_pred ---c--c------CCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCE-EEEEecCC-EEEEeEEEECCCCcc
Confidence 0 0 00001122334444444333 267774 7789888876543 44777666 589999999999876
Q ss_pred H
Q 022277 215 P 215 (300)
Q Consensus 215 ~ 215 (300)
.
T Consensus 115 ~ 115 (555)
T TIGR03143 115 R 115 (555)
T ss_pred C
Confidence 4
No 130
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.15 E-value=1.7e-09 Score=101.22 Aligned_cols=158 Identities=23% Similarity=0.245 Sum_probs=85.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEc---hhHHHH-HHH-----cCC-cHHHH
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF---KNGWSV-LDA-----LGV-GSDLR 120 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~---~~~~~~-l~~-----~g~-~~~~~ 120 (300)
..+||+|||||.|||++|+.+++.|.+|+|+||....+. +|...... .++.+. +.. -++ ..++.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 468999999999999999999999999999999875432 11111111 111111 111 011 01111
Q ss_pred hcc----------ccccceEEEc-CCCceEEEecCCCCC--------CCcceeeec--HHHHHHHHHhcC--CCCeEEeC
Q 022277 121 SQF----------LEIKGMAVKS-EDGRELRSFGFKDED--------ASQEVRAVE--RRILLETLANQL--PPESVQFS 177 (300)
Q Consensus 121 ~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~i~--~~~l~~~l~~~~--~g~~i~~~ 177 (300)
... ....++.+.. .+|.... ..+.... .....+..+ -..+...|.+.+ .|++++.+
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~-~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 186 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQ-RAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEee-cccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEec
Confidence 000 0011222222 1121110 0000000 000000011 135666665544 48999999
Q ss_pred CeEEEEEE-cCCceEEEEE---cCCc--EEEcCEEEEcCCCChH
Q 022277 178 SELAKIET-SGNGVTILEL---VNGT--RIYANIVIGCDGIRSP 215 (300)
Q Consensus 178 ~~v~~i~~-~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~ 215 (300)
+.++++.. +++.+.+|.. .+|+ .+.|+.||+|||....
T Consensus 187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 99999887 4555666654 3554 5789999999998764
No 131
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.15 E-value=7.7e-10 Score=101.39 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=83.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCC------CceeeEc-hhHHH-HHHHc-----CC-cHHHHhc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG------GTSLTLF-KNGWS-VLDAL-----GV-GSDLRSQ 122 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~------g~~~~~~-~~~~~-~l~~~-----g~-~~~~~~~ 122 (300)
...||+|||+|.|||++|+.+++ |.+|+|+||.+..+.. +-..... .++.+ .++.. ++ ..++...
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 80 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY 80 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence 36799999999999999999976 9999999998764321 1111111 11111 11110 10 0110000
Q ss_pred c----------ccccceEEEc-CCCceEEEecCCCCCCCccee----eecHHHHHHHHHhcC-CCCeEEeCCeEEEEEEc
Q 022277 123 F----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVR----AVERRILLETLANQL-PPESVQFSSELAKIETS 186 (300)
Q Consensus 123 ~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~i~~~~l~~~l~~~~-~g~~i~~~~~v~~i~~~ 186 (300)
. ....++.+.. .++...... .......... ......+.+.|.+.+ .++++++++.++++..+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~--~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~~gV~i~~~~~v~~Li~~ 158 (510)
T PRK08071 81 LVEEGPKEIQELIENGMPFDGDETGPLHLGK--EGAHRKRRILHAGGDATGKNLLEHLLQELVPHVTVVEQEMVIDLIIE 158 (510)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCceeecc--CcCccCCeEEecCCCCcHHHHHHHHHHHHhcCCEEEECeEhhheeec
Confidence 0 0001222211 111110000 0000000000 011234666666555 58999999999999876
Q ss_pred CCceEEEEEcC--Cc--EEEcCEEEEcCCCChH
Q 022277 187 GNGVTILELVN--GT--RIYANIVIGCDGIRSP 215 (300)
Q Consensus 187 ~~~~~~v~~~~--g~--~~~ad~vV~A~G~~s~ 215 (300)
++.+.+|...+ |+ .+.|+.||+|+|..+.
T Consensus 159 ~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 159 NGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred CCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 66666665543 33 5889999999999875
No 132
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.14 E-value=1.6e-09 Score=100.54 Aligned_cols=159 Identities=22% Similarity=0.243 Sum_probs=85.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCC------CCceeeEc-hhHHH-HHHHc---C--Cc-HHHH
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRT------GGTSLTLF-KNGWS-VLDAL---G--VG-SDLR 120 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~------~g~~~~~~-~~~~~-~l~~~---g--~~-~~~~ 120 (300)
..+||+|||||++||++|+.+++. |.+|+|+||....+. ++.+.... ..+.+ .++.. + +. .++.
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 357999999999999999999987 689999999875432 11111111 11111 11110 1 10 0000
Q ss_pred hcc----------ccccceEEEc-CCCceEEEecCCCCCCCcceeee--cHHHHHHHHHhcC---CCCeEEeCCeEEEEE
Q 022277 121 SQF----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL---PPESVQFSSELAKIE 184 (300)
Q Consensus 121 ~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i--~~~~l~~~l~~~~---~g~~i~~~~~v~~i~ 184 (300)
... ....++.+.. .+|..... .+.........+.. .-..+.+.|.+.+ ++++++.++.++++.
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~-~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 160 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVR-RFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLL 160 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccEecCCCceeee-ccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEE
Confidence 000 0011222221 12211100 00000000000000 1235666666544 478999999999998
Q ss_pred EcCCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277 185 TSGNGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (300)
Q Consensus 185 ~~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~ 216 (300)
.+++.+.+|.. .+|+ .+.|+.||+|||..+.+
T Consensus 161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 161 VDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred eeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 87776665543 3563 68899999999998864
No 133
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.14 E-value=7.4e-10 Score=102.59 Aligned_cols=35 Identities=37% Similarity=0.686 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
..+||||||+|.+||++|+.+++.|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46899999999999999999999999999999998
No 134
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=1.2e-09 Score=101.83 Aligned_cols=56 Identities=18% Similarity=0.081 Sum_probs=42.3
Q ss_pred HHHHHHHhcC--CCCeEEeCCeEEEEEEcC-CceEEEEE---cCCc--EEEcCEEEEcCCCChH
Q 022277 160 ILLETLANQL--PPESVQFSSELAKIETSG-NGVTILEL---VNGT--RIYANIVIGCDGIRSP 215 (300)
Q Consensus 160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~-~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~ 215 (300)
.+...|.+.+ .++++++++.++++..++ +.+.+|.. .+|+ .+.|+.||+|+|..+.
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 4566665544 489999999999998765 45666654 3554 6889999999999875
No 135
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=1.6e-09 Score=100.89 Aligned_cols=36 Identities=39% Similarity=0.612 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
..+||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 568999999999999999999999999999999754
No 136
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.14 E-value=2.4e-10 Score=104.18 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277 158 RRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (300)
Q Consensus 158 ~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (300)
-..+.+.|.+.+ .|++|+++++|++|..++++.+++...+|+.+++|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 457777777766 4899999999999999888666688888877999999988876
No 137
>PRK08275 putative oxidoreductase; Provisional
Probab=99.13 E-value=6.6e-10 Score=102.97 Aligned_cols=158 Identities=21% Similarity=0.236 Sum_probs=82.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceee---E----ch--hHH-HHHHHc-----CCc-HH
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLT---L----FK--NGW-SVLDAL-----GVG-SD 118 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~---~----~~--~~~-~~l~~~-----g~~-~~ 118 (300)
..+||+|||||.|||+||+.+++. |.+|+|+||.+....+....+ + .+ .+. ..++.+ ++. .+
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 458999999999999999999987 789999999986422111110 0 00 111 111100 110 11
Q ss_pred HHhcc----------ccccceEEEc-CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEE
Q 022277 119 LRSQF----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIET 185 (300)
Q Consensus 119 ~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~ 185 (300)
+.... ....++.+.. ..+..... ... ...........-..+.+.|.+.+ .|++|++++.++++..
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~-~~~-~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~ 165 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVK-KVH-HMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLT 165 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeee-ccc-ccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEE
Confidence 10000 0111222222 11211000 000 00000000001124455555444 4899999999999987
Q ss_pred c-CCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277 186 S-GNGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (300)
Q Consensus 186 ~-~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~ 216 (300)
+ ++.+.+|.. .+|+ .+.|+.||+|+|..+.+
T Consensus 166 ~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 6 455555543 3554 58899999999997653
No 138
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.13 E-value=1.7e-09 Score=100.58 Aligned_cols=58 Identities=17% Similarity=0.058 Sum_probs=43.2
Q ss_pred HHHHHHHHhcC--CCCeEEeCCeEEEEEEc-CCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277 159 RILLETLANQL--PPESVQFSSELAKIETS-GNGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (300)
Q Consensus 159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~-~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~ 216 (300)
..+...|.+.+ .+++++.++.++++..+ ++.+.+|.. .+|+ .+.|+.||+|||..+.+
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 35666666554 48899999999999875 456666654 3554 57899999999998754
No 139
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.12 E-value=2.8e-09 Score=96.71 Aligned_cols=54 Identities=31% Similarity=0.438 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277 160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 160 ~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s 214 (300)
.+.+.|.+.+...+|+++++|++|+.++++ +.|.+.+|+++.||.||+|.-...
T Consensus 222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~vI~a~p~~~ 275 (451)
T PRK11883 222 SLIEALEEKLPAGTIHKGTPVTKIDKSGDG-YEIVLSNGGEIEADAVIVAVPHPV 275 (451)
T ss_pred HHHHHHHHhCcCCeEEeCCEEEEEEEcCCe-EEEEECCCCEEEcCEEEECCCHHH
Confidence 344444444422279999999999988776 558888888899999999987544
No 140
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.11 E-value=1.4e-09 Score=99.73 Aligned_cols=62 Identities=18% Similarity=0.316 Sum_probs=52.0
Q ss_pred HHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhhhc
Q 022277 159 RILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI 220 (300)
Q Consensus 159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~ 220 (300)
..+.+.|.+.+ .|++|+++++|++|..+++++.+|.+.+|+.++||.||.|.|.+..+.+.+
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 45666666665 489999999999999887777889999998899999999999988776665
No 141
>PLN02568 polyamine oxidase
Probab=99.11 E-value=2.5e-09 Score=98.21 Aligned_cols=54 Identities=26% Similarity=0.421 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277 158 RRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (300)
Q Consensus 158 ~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (300)
...|.+.|.+.+++..|+++++|+.|+..+++ +.|.+.+|+++.||.||+|.-.
T Consensus 241 ~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~-v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 241 YLSVIEALASVLPPGTIQLGRKVTRIEWQDEP-VKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCe-EEEEEcCCCEEEcCEEEEcCCH
Confidence 34688888888866689999999999998777 4588999988999999998764
No 142
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=2.6e-09 Score=99.51 Aligned_cols=58 Identities=12% Similarity=0.027 Sum_probs=42.8
Q ss_pred HHHHHHHHhcC--CCCeEEeCCeEEEEEEcC----CceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277 159 RILLETLANQL--PPESVQFSSELAKIETSG----NGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (300)
Q Consensus 159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~----~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~ 216 (300)
..+.+.|.+.+ .|++++.++.++++..++ +.+.+|.. .+|+ .+.|+.||+|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 35666666655 489999999999998665 45666654 3554 57899999999998754
No 143
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.10 E-value=7.8e-10 Score=85.25 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=34.7
Q ss_pred CCeEE-eCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277 171 PESVQ-FSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (300)
Q Consensus 171 g~~i~-~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (300)
+++|. ...+|+++...+++ +.|.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG-YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc-EEEEECCCCEEEeCEEEECCCC
Confidence 55554 37799999998887 5688999999999999999995
No 144
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.10 E-value=2.4e-09 Score=97.42 Aligned_cols=62 Identities=27% Similarity=0.431 Sum_probs=46.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCcCCC-------CceeeE--------chhHHHHHHHcCCcHH
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLRTG-------GTSLTL--------FKNGWSVLDALGVGSD 118 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~----G~~V~viE~~~~~~~~-------g~~~~~--------~~~~~~~l~~~g~~~~ 118 (300)
+.||+|||||++||++|+.|+++ |++|+|+|+++.++.. |..+.. .+...++++++|+...
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~ 81 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHV 81 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCcc
Confidence 36999999999999999999999 9999999999987421 111111 2346778888887654
Q ss_pred H
Q 022277 119 L 119 (300)
Q Consensus 119 ~ 119 (300)
+
T Consensus 82 ~ 82 (462)
T TIGR00562 82 L 82 (462)
T ss_pred c
Confidence 3
No 145
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.10 E-value=2.9e-09 Score=96.89 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhhhc
Q 022277 160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI 220 (300)
Q Consensus 160 ~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~ 220 (300)
.|.+.|.+.+.+++|+++++|++|+.++++ +.|.+.+|+.+.||.||.|.- .....+.+
T Consensus 227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~a~p-~~~~~~ll 285 (463)
T PRK12416 227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDR-YEISFANHESIQADYVVLAAP-HDIAETLL 285 (463)
T ss_pred HHHHHHHHhcccccEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEEEECCC-HHHHHhhc
Confidence 455566665544579999999999988877 558888888899999999984 33344444
No 146
>PLN02815 L-aspartate oxidase
Probab=99.09 E-value=7.1e-10 Score=102.87 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..+||+|||+|.+||++|+.+++.| +|+|+||....
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 5689999999999999999999999 99999998864
No 147
>PRK10262 thioredoxin reductase; Provisional
Probab=99.08 E-value=2.5e-09 Score=92.63 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=32.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~ 90 (300)
...+||+||||||+||++|..|+++|++|+++|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 36789999999999999999999999999999964
No 148
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=99.07 E-value=6.5e-10 Score=97.49 Aligned_cols=125 Identities=22% Similarity=0.246 Sum_probs=78.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCC--------CceeeEchhHHHHHHHcCCcHH-HHhccccccc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG--------GTSLTLFKNGWSVLDALGVGSD-LRSQFLEIKG 128 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~--------g~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~ 128 (300)
..||+|||||++|+++|+.|+++|++|+|+|+.+..... ...+.....+...+...|++.. +.....
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs---- 77 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS---- 77 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc----
Confidence 369999999999999999999999999999987765321 1234444555666777787752 222111
Q ss_pred eEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCE
Q 022277 129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANI 205 (300)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~ 205 (300)
..+....... + .......++|..+.+.|.+.+ ++++++ ..+|+++. + | .
T Consensus 78 l~~~aad~~~---v------PA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~--~----------~------~ 129 (436)
T PRK05335 78 LIMEAADAHR---V------PAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP--E----------D------I 129 (436)
T ss_pred hheecccccC---C------CCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc--c----------C------C
Confidence 1111100000 0 011224678887888877766 567776 55777664 1 1 7
Q ss_pred EEEcCCCCh
Q 022277 206 VIGCDGIRS 214 (300)
Q Consensus 206 vV~A~G~~s 214 (300)
||+|+|..+
T Consensus 130 viiatG~~~ 138 (436)
T PRK05335 130 TIIATGPLT 138 (436)
T ss_pred EEEeCCCCc
Confidence 788888754
No 149
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.07 E-value=4e-09 Score=93.41 Aligned_cols=61 Identities=30% Similarity=0.470 Sum_probs=48.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCC-------CCceeeE-------c-hhHHHHHHHcCCcHHHH
Q 022277 60 DIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRT-------GGTSLTL-------F-KNGWSVLDALGVGSDLR 120 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~-------~g~~~~~-------~-~~~~~~l~~~g~~~~~~ 120 (300)
.|+|||||++||++|+.|++++ .+|+|+|+.++.+. .|..+.. . +...+.++++|+.+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 6899999999999999999999 99999999987642 1211111 2 45678888999988776
No 150
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.07 E-value=1.9e-09 Score=99.47 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=81.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEc-hhH-HHHHHHc-----CC-cHHHHh
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF-KNG-WSVLDAL-----GV-GSDLRS 121 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~-~~~-~~~l~~~-----g~-~~~~~~ 121 (300)
...+||+|||+|.|||+||+.++ .|.+|+|+||.+..+. ++-..... ..+ ...++.+ ++ ..++..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 85 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 85 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 35689999999999999999996 5999999999875432 11111111 111 1111111 10 011000
Q ss_pred cc----------ccccceEEEcCCCceEEEecCCCCCCCcceeee--cHHHHHHHHHhcC---CCCeEEeCCeEEEEEEc
Q 022277 122 QF----------LEIKGMAVKSEDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL---PPESVQFSSELAKIETS 186 (300)
Q Consensus 122 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~ 186 (300)
.. ....++.+....+.... ............+.. .-..+.+.|.+.+ .+++|++++.++++..+
T Consensus 86 ~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~-~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~ 164 (553)
T PRK07395 86 FLVEQAPEAIASLVEMGVAFDRHGQHLAL-TLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLE 164 (553)
T ss_pred HHHHHHHHHHHHHHhcCCeeecCCCceee-ecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheec
Confidence 00 00112222221111100 000000000000111 1134555665544 38999999999999876
Q ss_pred C--CceEEEEEc-CCc--EEEcCEEEEcCCCChH
Q 022277 187 G--NGVTILELV-NGT--RIYANIVIGCDGIRSP 215 (300)
Q Consensus 187 ~--~~~~~v~~~-~g~--~~~ad~vV~A~G~~s~ 215 (300)
+ +.+.+|... +|. .+.|+.||+|+|..+.
T Consensus 165 ~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 165 PETGRCQGISLLYQGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred CCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence 3 455555543 443 4789999999998653
No 151
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.07 E-value=3.4e-09 Score=98.25 Aligned_cols=38 Identities=34% Similarity=0.667 Sum_probs=35.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+||+|||+|++|+++|+.++++|++|+||||.+..
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 45789999999999999999999999999999998765
No 152
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.07 E-value=2.3e-09 Score=98.90 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..+||+|||+|.|||++|+.+++. .+|+|+||....
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 568999999999999999999986 899999998753
No 153
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.07 E-value=4e-09 Score=93.38 Aligned_cols=109 Identities=24% Similarity=0.377 Sum_probs=79.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
...+|+|||||+.|+.+|..|++.|.+|+++|+.+.+...- +
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~-----------------~--------------------- 181 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL-----------------M--------------------- 181 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh-----------------C---------------------
Confidence 34689999999999999999999999999999987642100 0
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh--
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS-- 214 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-- 214 (300)
+. -....+.+.|.+. |+++++++++++++.+++. +.+.+.+|+++.+|.||.|+|..+
T Consensus 182 -------------~~----~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 182 -------------PP----EVSSRLQHRLTEM--GVHLLLKSQLQGLEKTDSG-IRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred -------------CH----HHHHHHHHHHHhC--CCEEEECCeEEEEEccCCE-EEEEEcCCcEEECCEEEECcCCCcch
Confidence 00 0011333444333 8999999999999876554 558888998999999999999865
Q ss_pred HhhhhcCCC
Q 022277 215 PIAKWIGFS 223 (300)
Q Consensus 215 ~~r~~~g~~ 223 (300)
.+.+..|+.
T Consensus 242 ~l~~~~gl~ 250 (377)
T PRK04965 242 ALARRAGLA 250 (377)
T ss_pred HHHHHCCCC
Confidence 354555543
No 154
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.06 E-value=2.2e-09 Score=98.71 Aligned_cols=62 Identities=21% Similarity=0.384 Sum_probs=50.1
Q ss_pred HHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhhhc
Q 022277 159 RILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI 220 (300)
Q Consensus 159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~ 220 (300)
..+.+.|.+.+ .|++|+++++|++|..++++++.|.+.+|+.+.||.||.|.+......+.+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 45666666655 389999999999999887777789999998899999999999766555444
No 155
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.06 E-value=2.4e-09 Score=96.52 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=42.7
Q ss_pred HHHHHHHhcC--CCCeEEeCCeEEEEEEc--CCceEEEEEcC-CcEEEcCEEEEcCCCChHhhh
Q 022277 160 ILLETLANQL--PPESVQFSSELAKIETS--GNGVTILELVN-GTRIYANIVIGCDGIRSPIAK 218 (300)
Q Consensus 160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~--~~~~~~v~~~~-g~~~~ad~vV~A~G~~s~~r~ 218 (300)
.+.+.|.+.+ .|++|+++++|+++..+ ++.+++|...+ +..+.++.||+|+|..+..++
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~ 187 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRD 187 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHH
Confidence 4566665554 48999999999999876 34455555543 347999999999998765433
No 156
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.06 E-value=2.3e-09 Score=100.82 Aligned_cols=37 Identities=27% Similarity=0.538 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..+||+|||||.+||.+|+.+++.|.+|+|+||.+..
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 5689999999999999999999999999999998754
No 157
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.06 E-value=1.9e-09 Score=98.96 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=42.0
Q ss_pred HHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcC-Cc--EEEcCEEEEcCCCChH
Q 022277 159 RILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVN-GT--RIYANIVIGCDGIRSP 215 (300)
Q Consensus 159 ~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~-g~--~~~ad~vV~A~G~~s~ 215 (300)
..+.+.|.+.+ .+++++.++.++++..+++.+++|...+ +. .+.|+.||+|+|..+.
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 35666665544 3799999999999887666666666543 32 5899999999999764
No 158
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.06 E-value=3.7e-09 Score=92.28 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=55.9
Q ss_pred eeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCCCCh-HhhhhcCCC
Q 022277 154 RAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGIRS-PIAKWIGFS 223 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~~s-~~r~~~g~~ 223 (300)
..++...|.+.|.+.+ ++++++++++|++|++.+++.|.|.+.+ | ..+.|++|++..|..| .+.++.|++
T Consensus 176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~ 254 (488)
T PF06039_consen 176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIP 254 (488)
T ss_pred ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCCh
Confidence 4567778888887766 4899999999999999998878887743 2 4799999988888887 567777764
No 159
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.06 E-value=1.5e-09 Score=101.15 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=30.9
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 61 VvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
|+|||+|+|||+||+.+++.|.+|+|+||.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 699999999999999999999999999998743
No 160
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.05 E-value=3e-09 Score=94.77 Aligned_cols=100 Identities=26% Similarity=0.329 Sum_probs=73.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.....
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~-------------------------------------- 184 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNA-------------------------------------- 184 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhc--------------------------------------
Confidence 346899999999999999999999999999999876521000
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
+. .....+.+.+.+. |++++++++|++++. ++. +.+.+.+|+++.+|.||.|.|....
T Consensus 185 -------------~~----~~~~~l~~~l~~~--GV~i~~~~~V~~i~~-~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 185 -------------PP----PVQRYLLQRHQQA--GVRILLNNAIEHVVD-GEK-VELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred -------------CH----HHHHHHHHHHHHC--CCEEEeCCeeEEEEc-CCE-EEEEECCCCEEECCEEEECCCCChh
Confidence 00 0011233333333 899999999999976 333 4478888989999999999998654
No 161
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.05 E-value=2.6e-09 Score=95.19 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=71.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 134 (300)
...+|+|||||++|+++|..|++.|. +|+|+++.+.....- ..+...+....
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r---------------~~l~~~~~~~~----------- 55 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYER---------------PPLSKSMLLED----------- 55 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCC---------------CCCCHHHHCCC-----------
Confidence 34689999999999999999999987 799999887542100 00101110000
Q ss_pred CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s 214 (300)
. ..... +... +.+.+ .+++++.++.|+.+..++.. |.+.+|+.+.+|.||+|+|...
T Consensus 56 ---~-----------~~~~~-~~~~---~~~~~--~~i~~~~g~~V~~id~~~~~---v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 56 ---S-----------PQLQQ-VLPA---NWWQE--NNVHLHSGVTIKTLGRDTRE---LVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred ---C-----------ccccc-cCCH---HHHHH--CCCEEEcCCEEEEEECCCCE---EEECCCCEEEcCEEEEccCCCC
Confidence 0 00000 0001 11112 28899999999999876543 6778888899999999999876
Q ss_pred H
Q 022277 215 P 215 (300)
Q Consensus 215 ~ 215 (300)
.
T Consensus 113 ~ 113 (396)
T PRK09754 113 R 113 (396)
T ss_pred C
Confidence 3
No 162
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.05 E-value=5.6e-09 Score=85.11 Aligned_cols=222 Identities=11% Similarity=0.112 Sum_probs=114.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC------CcEEEEecCCCcC-CCCceeeEc-----hhHHHHHHH--cCCcHHHHhc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLG------IGSLVIEQADSLR-TGGTSLTLF-----KNGWSVLDA--LGVGSDLRSQ 122 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G------~~V~viE~~~~~~-~~g~~~~~~-----~~~~~~l~~--~g~~~~~~~~ 122 (300)
...+|+|||||+.|+.+||+|++++ +.|+|+|...-.+ ..|.+.++. +.-.+-|.. +.+..++.+.
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde 88 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE 88 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence 4589999999999999999999987 7899999887543 122222211 110111111 1122222221
Q ss_pred cccccc-----eEEEc---C-CCceEE----EecCC---------CCCCCcceeeecHHHHHHHHHhcC---CCCeEEeC
Q 022277 123 FLEIKG-----MAVKS---E-DGRELR----SFGFK---------DEDASQEVRAVERRILLETLANQL---PPESVQFS 177 (300)
Q Consensus 123 ~~~~~~-----~~~~~---~-~~~~~~----~~~~~---------~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~ 177 (300)
.-.... ...+. . +..... .+++. .........++++..+.+.+++.+ .++++.++
T Consensus 89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G 168 (380)
T KOG2852|consen 89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG 168 (380)
T ss_pred hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe
Confidence 111111 11000 0 000000 01110 012334556789999999998877 35888887
Q ss_pred CeEEEEEEcCCceEEEEEc---C-CcEEEcCEEEEcCCCChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceE-EE
Q 022277 178 SELAKIETSGNGVTILELV---N-GTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLN-YI 252 (300)
Q Consensus 178 ~~v~~i~~~~~~~~~v~~~---~-g~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 252 (300)
+|.++..+..++..+..+ + ......+.+|+|.|.|+..-. +....+|......+...... +..+... ..
T Consensus 169 -kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskll----p~~rIsglrihsI~l~~~e~-~v~~~avf~~ 242 (380)
T KOG2852|consen 169 -KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLL----PFTRISGLRIHSITLSPGEK-PVGPSAVFCE 242 (380)
T ss_pred -eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhc----cccccceeeeeeEEecCCCC-CCCCceEEEE
Confidence 477787555554444443 2 246788999999999985421 12233445444444444332 2222111 11
Q ss_pred E--eCC---eEEEEEEcCCCeEEEEEEEcCCCCCchh
Q 022277 253 Y--GRG---VRAGYVPVSPTKVYWFICHNNPTPGYLA 284 (300)
Q Consensus 253 ~--~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 284 (300)
+ .++ .---+|++.+++++....++.-+..++.
T Consensus 243 l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPed 279 (380)
T KOG2852|consen 243 LNTMDGLEICKPEEYARKDREVYICGETDKEHLLPED 279 (380)
T ss_pred EEeCCCccccCcceeecCCceEEEecCCCccccCCcc
Confidence 1 122 1234678888888654444433323443
No 163
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=4.5e-09 Score=97.93 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=34.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
.+.||+|||+|.|||++|+.+++.|.+|+|+||....
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4579999999999999999999999999999998754
No 164
>PLN02268 probable polyamine oxidase
Probab=99.04 E-value=4.8e-09 Score=94.73 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=33.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
.+|+|||||++||++|+.|.+.|++|+|+|++++++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G 36 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG 36 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 479999999999999999999999999999999874
No 165
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.04 E-value=3.4e-09 Score=97.37 Aligned_cols=37 Identities=27% Similarity=0.565 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
..+||||||+| +|+++|+.+++.|.+|+||||.+..+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G 42 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG 42 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 47899999999 99999999999999999999987643
No 166
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.04 E-value=7.7e-09 Score=93.89 Aligned_cols=59 Identities=29% Similarity=0.429 Sum_probs=45.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCce----------------eeEchhHHHHHHHcCCcHH
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS----------------LTLFKNGWSVLDALGVGSD 118 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~----------------~~~~~~~~~~l~~~g~~~~ 118 (300)
+|+|||||++||++|+.|+++|++|+|+|+.+.++....+ ....++..++++++|+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence 5899999999999999999999999999999876421111 1123667888899987543
No 167
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.03 E-value=4.6e-09 Score=93.79 Aligned_cols=102 Identities=24% Similarity=0.397 Sum_probs=80.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
..+.+++|||||+.|++.|..+++.|.+|+|+|+.+.+.+.-. +++
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D------------------~ei---------------- 216 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGED------------------PEI---------------- 216 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCC------------------HHH----------------
Confidence 3678999999999999999999999999999999998743110 111
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCc--EEEcCEEEEcCCCC
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGT--RIYANIVIGCDGIR 213 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~ad~vV~A~G~~ 213 (300)
...+.+.|.+ .+++++.+++++.++..+++ +.+.+++|+ ++++|.|++|+|+.
T Consensus 217 ----------------------~~~~~~~l~~--~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 217 ----------------------SKELTKQLEK--GGVKILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred ----------------------HHHHHHHHHh--CCeEEEccceEEEEEecCCe-EEEEEecCCCCEEEeeEEEEccCCc
Confidence 1134444444 38899999999999988777 558888876 68999999999987
Q ss_pred hHh
Q 022277 214 SPI 216 (300)
Q Consensus 214 s~~ 216 (300)
...
T Consensus 272 Pn~ 274 (454)
T COG1249 272 PNT 274 (454)
T ss_pred cCC
Confidence 644
No 168
>PRK07233 hypothetical protein; Provisional
Probab=99.03 E-value=2.4e-09 Score=96.64 Aligned_cols=35 Identities=49% Similarity=0.646 Sum_probs=33.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
+|+|||||++||++|+.|+++|++|+|+|+++.++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence 68999999999999999999999999999999874
No 169
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.02 E-value=4.9e-10 Score=90.18 Aligned_cols=114 Identities=25% Similarity=0.372 Sum_probs=68.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCceE
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGREL 139 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (300)
||+|||||++|+++|..|++.|++|+|+|+.+...... ..+..........
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~---------------~~~~~~~~~~~~~-------------- 51 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNS---------------GCIPSPLLVEIAP-------------- 51 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHH---------------SHHHHHHHHHHHH--------------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccc---------------ccccccccccccc--------------
Confidence 79999999999999999999999999998877431100 0000000000000
Q ss_pred EEecCCCCCCCcceeeecHH--HHHHHHHhcCCCCeEEeCCeEEEEEEcCCce----EEE---EEcCCcEEEcCEEEEcC
Q 022277 140 RSFGFKDEDASQEVRAVERR--ILLETLANQLPPESVQFSSELAKIETSGNGV----TIL---ELVNGTRIYANIVIGCD 210 (300)
Q Consensus 140 ~~~~~~~~~~~~~~~~i~~~--~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~----~~v---~~~~g~~~~ad~vV~A~ 210 (300)
......... .+.+.+.. .++++++++++.++......+ ..+ ...++..+.+|+||+|+
T Consensus 52 -----------~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAt 118 (201)
T PF07992_consen 52 -----------HRHEFLPARLFKLVDQLKN--RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIAT 118 (201)
T ss_dssp -----------HHHHHHHHHHGHHHHHHHH--HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEES
T ss_pred -----------ccccccccccccccccccc--ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecC
Confidence 000000000 22222322 277898899999998876631 112 23345689999999999
Q ss_pred CCChH
Q 022277 211 GIRSP 215 (300)
Q Consensus 211 G~~s~ 215 (300)
|..+.
T Consensus 119 G~~~~ 123 (201)
T PF07992_consen 119 GSRPR 123 (201)
T ss_dssp TEEEE
T ss_pred ccccc
Confidence 96644
No 170
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.02 E-value=8.4e-09 Score=96.12 Aligned_cols=38 Identities=29% Similarity=0.538 Sum_probs=35.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+||+|||+|++|+++|+.+++.|.+|+||||.+..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45789999999999999999999999999999998754
No 171
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.01 E-value=6.6e-09 Score=94.51 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=35.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
+..+||+|||||++|+++|+.|+++|.+|+|+|+.+.+
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~ 40 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 40 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 45799999999999999999999999999999997665
No 172
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.00 E-value=1e-07 Score=85.38 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=36.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~ 95 (300)
..+||+|||+|.+|+.+|..|++.|.+|+++|+++..+.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG 41 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence 579999999999999999999999999999999998743
No 173
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.00 E-value=8.6e-09 Score=96.00 Aligned_cols=39 Identities=26% Similarity=0.599 Sum_probs=35.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
...+||+|||+|++|+++|+.++++|.+|+|+||....+
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~g 45 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFG 45 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 457899999999999999999999999999999998653
No 174
>PLN02612 phytoene desaturase
Probab=99.00 E-value=1.9e-08 Score=93.32 Aligned_cols=64 Identities=28% Similarity=0.438 Sum_probs=48.6
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCce----------------eeEchhHHHHHHHcCCcHH
Q 022277 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS----------------LTLFKNGWSVLDALGVGSD 118 (300)
Q Consensus 55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~----------------~~~~~~~~~~l~~~g~~~~ 118 (300)
.....+|+|||||++||++|+.|+++|++|+|+|+++.++....+ ....++..++++++|+.+.
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~ 169 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR 169 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence 345689999999999999999999999999999998765321111 1123566788888887543
No 175
>PLN02576 protoporphyrinogen oxidase
Probab=99.00 E-value=1.7e-08 Score=92.81 Aligned_cols=38 Identities=39% Similarity=0.674 Sum_probs=35.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~~~ 94 (300)
..+||+|||||++||++|+.|++. |++|+|+|+.+.++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 457999999999999999999999 99999999999874
No 176
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.00 E-value=3.4e-09 Score=95.79 Aligned_cols=36 Identities=39% Similarity=0.529 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
..+||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 468999999999999999999999999999999763
No 177
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.99 E-value=3.8e-09 Score=96.09 Aligned_cols=37 Identities=32% Similarity=0.588 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
.++||+|||||++|+.+|..|++.|.+|+|+|+.+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~ 39 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL 39 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 4699999999999999999999999999999997654
No 178
>PRK09897 hypothetical protein; Provisional
Probab=98.99 E-value=6e-09 Score=95.13 Aligned_cols=146 Identities=18% Similarity=0.158 Sum_probs=75.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCCCCceeeEch--hHHHHHHHc---CC---cHHHHhccccccc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFK--NGWSVLDAL---GV---GSDLRSQFLEIKG 128 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~g~~~~~~~--~~~~~l~~~---g~---~~~~~~~~~~~~~ 128 (300)
++|+|||||++|+++|..|.+.+ ++|+|+|++..++ .+..+.. .....+-.. .+ ...+.+..... .
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G---~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~-~ 77 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG---VGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQ-E 77 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC---cceeecCCCChHHHHhcccccccCCChHHHHHHhhhh-h
Confidence 58999999999999999998864 5899999987663 2222221 111111110 00 01111110000 0
Q ss_pred eEEEcCCCceEEEecCCCCCCCcceeeec---HHHHHHHHHhcC--CC--CeEEeCCeEEEEEEcCCceEEEEEcC-CcE
Q 022277 129 MAVKSEDGRELRSFGFKDEDASQEVRAVE---RRILLETLANQL--PP--ESVQFSSELAKIETSGNGVTILELVN-GTR 200 (300)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~l~~~l~~~~--~g--~~i~~~~~v~~i~~~~~~~~~v~~~~-g~~ 200 (300)
..+....+....... ...+....+. -....+.+.+.+ .| +.++.+++|++++..+++ +.|.+.+ |..
T Consensus 78 ~~~~~~~g~~~~~l~----~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~~V~t~~gg~~ 152 (534)
T PRK09897 78 DSHLQRYGVKKETLH----DRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-VMLATNQDLPS 152 (534)
T ss_pred HHHHHhcCCcceeec----CCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-EEEEECCCCeE
Confidence 000000000000000 0000000011 012222333333 24 577889999999888776 5577755 467
Q ss_pred EEcCEEEEcCCCC
Q 022277 201 IYANIVIGCDGIR 213 (300)
Q Consensus 201 ~~ad~vV~A~G~~ 213 (300)
+.+|.||+|+|..
T Consensus 153 i~aD~VVLAtGh~ 165 (534)
T PRK09897 153 ETFDLAVIATGHV 165 (534)
T ss_pred EEcCEEEECCCCC
Confidence 9999999999974
No 179
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.98 E-value=1.3e-08 Score=92.63 Aligned_cols=101 Identities=23% Similarity=0.348 Sum_probs=76.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
...+|+|||||+.|+.+|..|++.|.+|+++|+.+.+.+.- ..+
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~------------------d~~------------------ 217 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFL------------------DDE------------------ 217 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcC------------------CHH------------------
Confidence 35799999999999999999999999999999988652110 000
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
....+.+.|.+. |++++++++|++++.++++ +.+.+.+|+++++|.||+|+|.....
T Consensus 218 --------------------~~~~l~~~l~~~--gI~v~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 218 --------------------ISDALSYHLRDS--GVTIRHNEEVEKVEGGDDG-VIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred --------------------HHHHHHHHHHHc--CCEEEECCEEEEEEEeCCe-EEEEECCCCEEEeCEEEEeecCCccc
Confidence 011333444333 8999999999999876665 44677788889999999999987654
No 180
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.97 E-value=1.1e-08 Score=95.12 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHH----HcCCcEEEEecCCCc
Q 022277 60 DIVIVGAGIAGLATAVSLQ----RLGIGSLVIEQADSL 93 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~----~~G~~V~viE~~~~~ 93 (300)
||+|||||.|||+||+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 679999999998753
No 181
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.97 E-value=9.2e-09 Score=93.58 Aligned_cols=35 Identities=26% Similarity=0.577 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
..+||+|||||++|+++|..|+++|++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 56999999999999999999999999999999876
No 182
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.97 E-value=5.2e-09 Score=94.54 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=33.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
+.+||+|||||++|+++|..|++.|.+|+|+|+.+.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 469999999999999999999999999999999864
No 183
>PRK06370 mercuric reductase; Validated
Probab=98.97 E-value=9.1e-09 Score=93.59 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
+.++||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 356999999999999999999999999999999863
No 184
>PRK12839 hypothetical protein; Provisional
Probab=98.96 E-value=1.3e-08 Score=94.51 Aligned_cols=38 Identities=37% Similarity=0.558 Sum_probs=35.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+||+|||+|.+|+++|+.+++.|.+|+|+|+...+
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 35789999999999999999999999999999998765
No 185
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.96 E-value=4.9e-09 Score=86.77 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=37.5
Q ss_pred CCeEEeCCeEEEEEEcCCceEEEEEcC--Cc--EEEcCEEEEcCCCChH
Q 022277 171 PESVQFSSELAKIETSGNGVTILELVN--GT--RIYANIVIGCDGIRSP 215 (300)
Q Consensus 171 g~~i~~~~~v~~i~~~~~~~~~v~~~~--g~--~~~ad~vV~A~G~~s~ 215 (300)
-++|..+++|++|..+.+.+.+|...| |+ .+.++.||.|+|..+.
T Consensus 159 ~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 378999999999998888887887754 33 6889999999998764
No 186
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.96 E-value=2.3e-08 Score=92.72 Aligned_cols=37 Identities=30% Similarity=0.618 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
.++||+|||+|.+|+++|+.+++.|.+|+|||+.+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4789999999999999999999999999999998754
No 187
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.95 E-value=7.3e-09 Score=94.19 Aligned_cols=37 Identities=30% Similarity=0.536 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
.++||+||||||+|+++|..++++|.+|+|+|+...+
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~ 38 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL 38 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCce
Confidence 3589999999999999999999999999999986544
No 188
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=1.4e-09 Score=96.16 Aligned_cols=145 Identities=17% Similarity=0.286 Sum_probs=87.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc--------CCCCceeeEchhHHHHHHHcCCcHHHHhccccccc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL--------RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKG 128 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~--------~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 128 (300)
..+||+|||||-||+++|+..+|.|.++.++--+... .-+|-+-+.-.+.++ .+| .+........+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEID---ALG---G~Mg~~~D~~~ 76 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREID---ALG---GLMGKAADKAG 76 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeeh---hcc---chHHHhhhhcC
Confidence 4599999999999999999999999999998876531 112222222111111 111 11111111111
Q ss_pred eEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCC-ceEEEEEcCCcEEEcC
Q 022277 129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGN-GVTILELVNGTRIYAN 204 (300)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~-~~~~v~~~~g~~~~ad 204 (300)
+.+...+... .........++++..+.+.+.+.+ ++..++ ...|+++..+++ .+++|.+++|..+.|+
T Consensus 77 IQ~r~LN~sK-------GPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~ 148 (621)
T COG0445 77 IQFRMLNSSK-------GPAVRAPRAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAK 148 (621)
T ss_pred CchhhccCCC-------cchhcchhhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecC
Confidence 1111110000 011122334566777777776665 466665 456777777655 5889999999999999
Q ss_pred EEEEcCCCChH
Q 022277 205 IVIGCDGIRSP 215 (300)
Q Consensus 205 ~vV~A~G~~s~ 215 (300)
.||+++|..-.
T Consensus 149 aVVlTTGTFL~ 159 (621)
T COG0445 149 AVVLTTGTFLR 159 (621)
T ss_pred EEEEeeccccc
Confidence 99999997643
No 189
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.95 E-value=1.1e-08 Score=92.64 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~ 90 (300)
+|||+||||||+|+++|+.++++|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999985
No 190
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.95 E-value=1.7e-08 Score=91.97 Aligned_cols=34 Identities=29% Similarity=0.645 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~ 90 (300)
..+||+|||||++|+++|..|+++|.+|+|+|+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4799999999999999999999999999999985
No 191
>PLN02676 polyamine oxidase
Probab=98.94 E-value=6.1e-08 Score=88.39 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCC--------CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277 158 RRILLETLANQLP--------PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 158 ~~~l~~~l~~~~~--------g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s 214 (300)
...+.+.|.+.+. +.+|+++++|++|+.+++++ .|.+.+|+++.||.||+|.....
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV-~V~~~~G~~~~a~~VIvtvPl~v 286 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGV-TVKTEDGSVYRAKYVIVSVSLGV 286 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcE-EEEECCCCEEEeCEEEEccChHH
Confidence 5567777777551 25799999999999988874 48999998999999999997544
No 192
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=3.5e-09 Score=95.84 Aligned_cols=39 Identities=38% Similarity=0.716 Sum_probs=36.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
....+|||||||++||+||.+|...|++|+|+|.+++++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 367899999999999999999999999999999999874
No 193
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.93 E-value=3.6e-09 Score=102.85 Aligned_cols=37 Identities=35% Similarity=0.416 Sum_probs=34.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+|||||||||++|+.|++.|++|+|||+.+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~ 341 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL 341 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence 4689999999999999999999999999999998866
No 194
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.93 E-value=7e-09 Score=103.50 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=35.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
...||||||+|.+|+++|+.+++.|.+|+|+||.+..+
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 46899999999999999999999999999999988653
No 195
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.93 E-value=1.4e-08 Score=91.84 Aligned_cols=101 Identities=20% Similarity=0.214 Sum_probs=75.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+...- ..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~------------------d~~------------------- 208 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSF------------------DSM------------------- 208 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCccc------------------CHH-------------------
Confidence 4799999999999999999999999999999988652110 000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC-cEEEcCEEEEcCCCChHh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG-TRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~~ad~vV~A~G~~s~~ 216 (300)
.+..+.+.|.+. |+++++++.|++++.++++...+.+++| +.+.+|.||.|+|.....
T Consensus 209 -------------------~~~~~~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 209 -------------------ISETITEEYEKE--GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred -------------------HHHHHHHHHHHc--CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 112334444433 8999999999999876444344777777 579999999999987654
No 196
>PRK06116 glutathione reductase; Validated
Probab=98.93 E-value=1.4e-08 Score=92.03 Aligned_cols=101 Identities=21% Similarity=0.287 Sum_probs=76.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||++|+.+|..|++.|.+|+++++.+.+.... ..+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~------------------~~~------------------- 209 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGF------------------DPD------------------- 209 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcccc------------------CHH-------------------
Confidence 4789999999999999999999999999999887542100 000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
....+.+.|.+. |++++++++|++++.++++.+.+.+.+|+++.+|.||+|+|.....
T Consensus 210 -------------------~~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 210 -------------------IRETLVEEMEKK--GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred -------------------HHHHHHHHHHHC--CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 011333444333 8999999999999876555344778888889999999999987644
No 197
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.93 E-value=1.7e-08 Score=98.52 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=33.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
..+||+|||||.+||.+|+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999875
No 198
>PRK14694 putative mercuric reductase; Provisional
Probab=98.93 E-value=1.6e-08 Score=92.13 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=34.1
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
....+||+|||||++|+++|..|++.|.+|+|+|+..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 3467999999999999999999999999999999863
No 199
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.93 E-value=6.9e-09 Score=93.96 Aligned_cols=111 Identities=20% Similarity=0.286 Sum_probs=67.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 60 DIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
+|+|||||++|+++|..|++.| .+|+|||+.+.......+ +. .+.. +
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~---------------~~-------------~~~~--~- 50 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACG---------------LP-------------YFVG--G- 50 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCC---------------Cc-------------eEec--c-
Confidence 7999999999999999999975 589999998864210000 00 0000 0
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE-cCCcEEE--cCEEEEcCCCCh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL-VNGTRIY--ANIVIGCDGIRS 214 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~-~~g~~~~--ad~vV~A~G~~s 214 (300)
........ +. ...+.+.+ .+++++++++|++++.++.. +.+.. .+++.++ +|++|+|+|...
T Consensus 51 --------~~~~~~~~--~~--~~~~~~~~--~gv~~~~~~~V~~id~~~~~-v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 51 --------FFDDPNTM--IA--RTPEEFIK--SGIDVKTEHEVVKVDAKNKT-ITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred --------ccCCHHHh--hc--CCHHHHHH--CCCeEEecCEEEEEECCCCE-EEEEECCCCCEEEecCCEEEECCCCCC
Confidence 00000000 00 00122222 28899999999999877665 32332 2355666 999999999875
Q ss_pred Hh
Q 022277 215 PI 216 (300)
Q Consensus 215 ~~ 216 (300)
..
T Consensus 116 ~~ 117 (444)
T PRK09564 116 II 117 (444)
T ss_pred CC
Confidence 43
No 200
>PRK06116 glutathione reductase; Validated
Probab=98.92 E-value=1e-08 Score=92.91 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~ 90 (300)
..+||+|||||++|+++|..|+++|++|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4689999999999999999999999999999986
No 201
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.92 E-value=3.4e-08 Score=91.48 Aligned_cols=38 Identities=29% Similarity=0.636 Sum_probs=34.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
...+||||||+| +|+++|+.+++.|.+|+|+||.+..+
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~G 51 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVG 51 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCc
Confidence 357999999999 89999999999999999999987653
No 202
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.92 E-value=7.7e-09 Score=89.94 Aligned_cols=39 Identities=36% Similarity=0.660 Sum_probs=36.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
....||||||+|.+||++|++|.+.|++|+|+|.++..+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcC
Confidence 467899999999999999999999999999999999873
No 203
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.92 E-value=2.2e-08 Score=96.37 Aligned_cols=118 Identities=24% Similarity=0.372 Sum_probs=83.8
Q ss_pred cceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHH
Q 022277 33 CFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDA 112 (300)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~ 112 (300)
.+..++..+...++.... ...+++|||||+.|+.+|..|++.|.+|+|+|+.+.+....
T Consensus 121 v~~~rt~~d~~~i~~~~~------~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~--------------- 179 (785)
T TIGR02374 121 VYVFRTIEDLDAIMAMAQ------RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQ--------------- 179 (785)
T ss_pred EEEeCCHHHHHHHHHHhh------cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhh---------------
Confidence 344556666655554433 34689999999999999999999999999999887541100
Q ss_pred cCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEE
Q 022277 113 LGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTI 192 (300)
Q Consensus 113 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~ 192 (300)
+.. .....+.+.|.+. |+++++++.++++..++ .+..
T Consensus 180 --ld~--------------------------------------~~~~~l~~~l~~~--GV~v~~~~~v~~i~~~~-~~~~ 216 (785)
T TIGR02374 180 --LDQ--------------------------------------TAGRLLQRELEQK--GLTFLLEKDTVEIVGAT-KADR 216 (785)
T ss_pred --cCH--------------------------------------HHHHHHHHHHHHc--CCEEEeCCceEEEEcCC-ceEE
Confidence 000 0011233334333 89999999999987543 3456
Q ss_pred EEEcCCcEEEcCEEEEcCCCCh
Q 022277 193 LELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 193 v~~~~g~~~~ad~vV~A~G~~s 214 (300)
|.+.+|+.+.+|.||.|+|...
T Consensus 217 v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 217 IRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred EEECCCCEEEcCEEEECCCCCc
Confidence 8889999999999999999764
No 204
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.92 E-value=2.8e-08 Score=95.84 Aligned_cols=126 Identities=25% Similarity=0.355 Sum_probs=87.2
Q ss_pred ceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHc
Q 022277 34 FQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDAL 113 (300)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~ 113 (300)
+..++..+...+..... ...+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.+..
T Consensus 127 ~~~rt~~d~~~l~~~~~------~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~---------------- 184 (847)
T PRK14989 127 FVYRTIEDLNAIEACAR------RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQ---------------- 184 (847)
T ss_pred EEECCHHHHHHHHHHHh------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhh----------------
Confidence 34456666655544433 34689999999999999999999999999999987541100
Q ss_pred CCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcC-CceEE
Q 022277 114 GVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSG-NGVTI 192 (300)
Q Consensus 114 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~-~~~~~ 192 (300)
+.. -....+.+.|.+. |+++++++.++++..++ +....
T Consensus 185 -ld~--------------------------------------~~~~~l~~~L~~~--GV~v~~~~~v~~I~~~~~~~~~~ 223 (847)
T PRK14989 185 -LDQ--------------------------------------MGGEQLRRKIESM--GVRVHTSKNTLEIVQEGVEARKT 223 (847)
T ss_pred -cCH--------------------------------------HHHHHHHHHHHHC--CCEEEcCCeEEEEEecCCCceEE
Confidence 000 0011333444333 99999999999997643 33455
Q ss_pred EEEcCCcEEEcCEEEEcCCCChH--hhhhcCC
Q 022277 193 LELVNGTRIYANIVIGCDGIRSP--IAKWIGF 222 (300)
Q Consensus 193 v~~~~g~~~~ad~vV~A~G~~s~--~r~~~g~ 222 (300)
+.+.+|+.+.+|.||.|+|.... +.+..|+
T Consensus 224 v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 224 MRFADGSELEVDFIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred EEECCCCEEEcCEEEECCCcccCchHHhhcCc
Confidence 78889999999999999998654 3344443
No 205
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.91 E-value=1.4e-08 Score=91.83 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
++||+|||||++|+++|..|+++|.+|+|+|+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 5899999999999999999999999999999853
No 206
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.91 E-value=1e-08 Score=90.55 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=32.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
.+|+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 48999999999999999999999999999988764
No 207
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.91 E-value=1.6e-08 Score=91.99 Aligned_cols=100 Identities=19% Similarity=0.357 Sum_probs=74.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||++|+.+|..|++.|.+|+++|+.+.+.+.. ..+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~------------------~~~------------------- 214 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGE------------------DKE------------------- 214 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcC------------------CHH-------------------
Confidence 4689999999999999999999999999999987652110 000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC---cEEEcCEEEEcCCCCh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG---TRIYANIVIGCDGIRS 214 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g---~~~~ad~vV~A~G~~s 214 (300)
....+.+.|.+. |++++++++|++++.++++ +.+.+.++ +.+.+|.||+|+|...
T Consensus 215 -------------------~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~-v~v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 215 -------------------ISKLAERALKKR--GIKIKTGAKAKKVEQTDDG-VTVTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred -------------------HHHHHHHHHHHc--CCEEEeCCEEEEEEEeCCE-EEEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 011233334333 8999999999999877665 34666655 5799999999999876
Q ss_pred Hh
Q 022277 215 PI 216 (300)
Q Consensus 215 ~~ 216 (300)
..
T Consensus 273 ~~ 274 (462)
T PRK06416 273 NT 274 (462)
T ss_pred CC
Confidence 43
No 208
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.90 E-value=1.9e-08 Score=91.47 Aligned_cols=101 Identities=21% Similarity=0.359 Sum_probs=75.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||++|+.+|..|++.|.+|+++|+.+.+.+.. ..+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~------------------~~~------------------- 212 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGE------------------DAE------------------- 212 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCC------------------CHH-------------------
Confidence 4689999999999999999999999999999987652100 000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCCChH
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIRSP 215 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~s~ 215 (300)
....+.+.|.+. |++++++++|++++.+++++. +.+.+| .++.+|.||+|+|..+.
T Consensus 213 -------------------~~~~~~~~l~~~--gi~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 213 -------------------VSKVVAKALKKK--GVKILTNTKVTAVEKNDDQVV-YENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred -------------------HHHHHHHHHHHc--CCEEEeCCEEEEEEEeCCEEE-EEEeCCcEEEEEeCEEEEecCCccc
Confidence 011233334333 899999999999987766643 666666 47999999999998775
Q ss_pred hh
Q 022277 216 IA 217 (300)
Q Consensus 216 ~r 217 (300)
..
T Consensus 271 ~~ 272 (461)
T TIGR01350 271 TE 272 (461)
T ss_pred CC
Confidence 43
No 209
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.89 E-value=8.1e-08 Score=83.40 Aligned_cols=75 Identities=21% Similarity=0.266 Sum_probs=54.8
Q ss_pred HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-----hhhhcCCCCCccccceE
Q 022277 160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-----IAKWIGFSEPKYVGHCA 232 (300)
Q Consensus 160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-----~r~~~g~~~~~~~~~~~ 232 (300)
++.+-+.+.+ .|++|+++++|.+++..++.+..|.+.+|+.+.+|.||+|.|+.+. +.+++|+....-.-...
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~~~p~dIG 253 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKMRAKPFDIG 253 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCcccccCCeeEE
Confidence 3444444444 3899999999999999988777899999999999999999998764 45555655332233344
Q ss_pred EE
Q 022277 233 YR 234 (300)
Q Consensus 233 ~~ 234 (300)
+|
T Consensus 254 VR 255 (486)
T COG2509 254 VR 255 (486)
T ss_pred EE
Confidence 44
No 210
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.89 E-value=2.2e-08 Score=98.57 Aligned_cols=36 Identities=33% Similarity=0.594 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
.+||+||||||+||++|+.|++.|++|+|+|+.+.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~ 198 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA 198 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 579999999999999999999999999999999876
No 211
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.89 E-value=1.1e-08 Score=98.73 Aligned_cols=37 Identities=35% Similarity=0.548 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+|||||++|+++|+.|++.|++|+|+|+.+.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 4579999999999999999999999999999998865
No 212
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.88 E-value=4.5e-08 Score=91.25 Aligned_cols=37 Identities=27% Similarity=0.568 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
.++||+|||+|++|+++|+.++++|.+|+|+||...+
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4689999999999999999999999999999998764
No 213
>PRK12831 putative oxidoreductase; Provisional
Probab=98.88 E-value=6.3e-09 Score=94.34 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=34.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
....||+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 35689999999999999999999999999999988765
No 214
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.87 E-value=4.5e-08 Score=89.11 Aligned_cols=34 Identities=29% Similarity=0.627 Sum_probs=32.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
+||+|||||++|+++|..|++.|.+|+|+|+ +.+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~ 35 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYL 35 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCC
Confidence 8999999999999999999999999999999 544
No 215
>PLN02507 glutathione reductase
Probab=98.87 E-value=3.2e-08 Score=90.57 Aligned_cols=100 Identities=14% Similarity=0.225 Sum_probs=75.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||++|+.+|..|++.|.+|+|+++.+.+... +..+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~~------------------- 245 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG------------------FDDE------------------- 245 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc------------------cCHH-------------------
Confidence 468999999999999999999999999999988754210 0000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
.+..+.+.|.+. |++++++++|++++.++++ ..+.+.+|+++++|.|+.|.|.....
T Consensus 246 -------------------~~~~l~~~l~~~--GI~i~~~~~V~~i~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 246 -------------------MRAVVARNLEGR--GINLHPRTNLTQLTKTEGG-IKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred -------------------HHHHHHHHHHhC--CCEEEeCCEEEEEEEeCCe-EEEEECCCcEEEcCEEEEeecCCCCC
Confidence 011333444333 8999999999999876555 44777788889999999999987654
No 216
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.86 E-value=6e-09 Score=68.03 Aligned_cols=32 Identities=47% Similarity=0.681 Sum_probs=29.7
Q ss_pred EECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 63 IVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 63 IIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
|||||++||++|+.|++.|++|+|+|+++.++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999999874
No 217
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.86 E-value=2.2e-08 Score=90.36 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=67.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
.+|+|||||++|+.+|..|++. +.+|+|+|+.+...-...++. . +....
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp---------------~-~~~~~------------- 52 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALP---------------Y-YIGEV------------- 52 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcc---------------h-hhcCc-------------
Confidence 3899999999999999999987 679999999986521110000 0 00000
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC-Cc--EEEcCEEEEcCCCC
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN-GT--RIYANIVIGCDGIR 213 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~-g~--~~~ad~vV~A~G~~ 213 (300)
. ........+.. +.+.++ .+++++.+++|++|+.++.. +.+...+ ++ .+.+|.||+|+|..
T Consensus 53 -----~-----~~~~~~~~~~~----~~~~~~-~~i~v~~~~~V~~Id~~~~~-v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 53 -----V-----EDRKYALAYTP----EKFYDR-KQITVKTYHEVIAINDERQT-VTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred -----c-----CCHHHcccCCH----HHHHHh-CCCEEEeCCEEEEEECCCCE-EEEEECCCCcEEeeecCEEEECCCCC
Confidence 0 00000000111 122222 28899999999999887755 3244322 22 46899999999987
Q ss_pred hH
Q 022277 214 SP 215 (300)
Q Consensus 214 s~ 215 (300)
..
T Consensus 117 ~~ 118 (438)
T PRK13512 117 AN 118 (438)
T ss_pred CC
Confidence 64
No 218
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.86 E-value=3.6e-08 Score=89.94 Aligned_cols=101 Identities=25% Similarity=0.329 Sum_probs=73.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+... .+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~------------------~~------------------- 222 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTED------------------AE------------------- 222 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCC------------------HH-------------------
Confidence 47999999999999999999999999999999886521100 00
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEE-cCCceEEEEEcCCc--EEEcCEEEEcCCCCh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIET-SGNGVTILELVNGT--RIYANIVIGCDGIRS 214 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g~--~~~ad~vV~A~G~~s 214 (300)
-...+.+.|.+. |++++++++|++++. .++++..+.+.+|+ .+.+|.||+|+|...
T Consensus 223 -------------------~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 223 -------------------LSKEVARLLKKL--GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred -------------------HHHHHHHHHHhc--CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 011233334333 899999999999975 23444434555663 699999999999876
Q ss_pred Hh
Q 022277 215 PI 216 (300)
Q Consensus 215 ~~ 216 (300)
..
T Consensus 282 ~~ 283 (472)
T PRK05976 282 NT 283 (472)
T ss_pred CC
Confidence 54
No 219
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.85 E-value=3.7e-08 Score=89.63 Aligned_cols=100 Identities=21% Similarity=0.380 Sum_probs=75.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+++|||||.+|+.+|..|++.|.+|+++++.+.+.+... .
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d------------------~-------------------- 218 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGED------------------A-------------------- 218 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCC------------------H--------------------
Confidence 46899999999999999999999999999998876521100 0
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
-....+.+.|.+. |+++++++++++++.++++ +.+.+.+|+.+++|.||.|+|.....
T Consensus 219 ------------------~~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~-~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 219 ------------------DAAEVLEEVFARR--GMTVLKRSRAESVERTGDG-VVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred ------------------HHHHHHHHHHHHC--CcEEEcCCEEEEEEEeCCE-EEEEECCCcEEEecEEEEeecCCcCC
Confidence 0011333444333 8999999999999876665 34777788889999999999987654
No 220
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.85 E-value=3.7e-08 Score=89.72 Aligned_cols=102 Identities=16% Similarity=0.190 Sum_probs=74.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS 133 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 133 (300)
...+|+|||||++|+.+|..++.. |.+|+|+|+.+.+.+.- ..+
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~------------------d~~--------------- 232 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGF------------------DST--------------- 232 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccccc------------------CHH---------------
Confidence 357899999999999999877654 99999999988652110 000
Q ss_pred CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277 134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (300)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (300)
-...+.+.|.+. |+++++++.+++++.++++...+.+.+|+.+.+|.||.|+|..
T Consensus 233 -----------------------~~~~l~~~L~~~--GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 233 -----------------------LRKELTKQLRAN--GINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred -----------------------HHHHHHHHHHHc--CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCC
Confidence 012344444433 8999999999999876554344777778889999999999987
Q ss_pred hHh
Q 022277 214 SPI 216 (300)
Q Consensus 214 s~~ 216 (300)
...
T Consensus 288 Pn~ 290 (486)
T TIGR01423 288 PRT 290 (486)
T ss_pred cCc
Confidence 654
No 221
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.85 E-value=2.7e-08 Score=87.31 Aligned_cols=144 Identities=22% Similarity=0.293 Sum_probs=86.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC------CCCceeeEch-----------------------------
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR------TGGTSLTLFK----------------------------- 104 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~------~~g~~~~~~~----------------------------- 104 (300)
||+|||+|+|||++|+.|.+. ++|+|+-|.+... ++|-+..+.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999998 9999999987541 2444433332
Q ss_pred ---hHHHHHHHcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCC
Q 022277 105 ---NGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSS 178 (300)
Q Consensus 105 ---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~ 178 (300)
...+.|..+|+..+-... ..+.+-...+.....+-... + ..-..++..|.+++ ++++++.++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~----g~~~lt~EggHS~rRIlH~~---~-----~TG~~I~~~L~~~v~~~p~I~v~e~~ 155 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDED----GRLHLTREGGHSRRRILHAA---D-----ATGKEIMTALLKKVRNRPNITVLEGA 155 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCC----CceeeeeecccCCceEEEec---C-----CccHHHHHHHHHHHhcCCCcEEEecc
Confidence 112333333332111000 01111111111100000000 0 11236677777666 589999999
Q ss_pred eEEEEEEcCC-ceEEEEEcCC----cEEEcCEEEEcCCCChHh
Q 022277 179 ELAKIETSGN-GVTILELVNG----TRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 179 ~v~~i~~~~~-~~~~v~~~~g----~~~~ad~vV~A~G~~s~~ 216 (300)
.+.++..+++ .+.+|.+.+. ..+.++.||+|+|..+.+
T Consensus 156 ~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 156 EALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred hhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCccc
Confidence 9999988887 4335666432 468899999999987755
No 222
>PRK07846 mycothione reductase; Reviewed
Probab=98.85 E-value=4.3e-08 Score=88.71 Aligned_cols=99 Identities=22% Similarity=0.367 Sum_probs=73.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
+.+++|||||+.|+.+|..|++.|.+|+++|+.+.+.+. ...++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~d~~~------------------ 209 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------LDDDI------------------ 209 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------cCHHH------------------
Confidence 469999999999999999999999999999998765210 00000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
+..+. .+.+ .++++++++++++++.++++ ..+.+.+|+.+++|.||+|+|.....
T Consensus 210 --------------------~~~l~-~l~~--~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 210 --------------------SERFT-ELAS--KRWDVRLGRNVVGVSQDGSG-VTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred --------------------HHHHH-HHHh--cCeEEEeCCEEEEEEEcCCE-EEEEECCCcEeecCEEEEEECCccCc
Confidence 01122 2222 27899999999999876555 44777788889999999999987643
No 223
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.85 E-value=5.8e-08 Score=88.31 Aligned_cols=38 Identities=34% Similarity=0.455 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~----G~~V~viE~~~~~~ 94 (300)
...+|+|||||++||++|+.|.+. |.+|+|+|+.+.++
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G 62 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG 62 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence 357999999999999999999995 68999999999764
No 224
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.84 E-value=4.3e-08 Score=88.72 Aligned_cols=100 Identities=21% Similarity=0.352 Sum_probs=75.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+++|||||++|+.+|..|++.|.+|+++|+.+.+.+. +..+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~~------------------- 208 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------FDDD------------------- 208 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------cCHH-------------------
Confidence 468999999999999999999999999999988754210 0000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
.+..+.+.|.+. |++++++++|++++.++++ ..+.+.+|+++.+|.||.|+|.....
T Consensus 209 -------------------~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 209 -------------------MRALLARNMEGR--GIRIHPQTSLTSITKTDDG-LKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred -------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEcCCe-EEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 011233334333 8999999999999876655 34777788889999999999987643
No 225
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.84 E-value=4e-08 Score=88.77 Aligned_cols=100 Identities=14% Similarity=0.218 Sum_probs=72.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
.+.+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+... .+
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~------------------~~------------------ 199 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREE------------------PS------------------ 199 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCC------------------HH------------------
Confidence 346899999999999999999999999999999886521100 00
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
....+.+.|.+. |++++++++|++++.+++.+. +. .+|+++.+|.||+|+|.....
T Consensus 200 --------------------~~~~~~~~l~~~--GI~i~~~~~V~~i~~~~~~v~-v~-~~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 200 --------------------VAALAKQYMEED--GITFLLNAHTTEVKNDGDQVL-VV-TEDETYRFDALLYATGRKPNT 255 (438)
T ss_pred --------------------HHHHHHHHHHHc--CCEEEcCCEEEEEEecCCEEE-EE-ECCeEEEcCEEEEeeCCCCCc
Confidence 011222333333 899999999999987655432 43 356689999999999987653
No 226
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.84 E-value=6.3e-08 Score=90.22 Aligned_cols=38 Identities=29% Similarity=0.621 Sum_probs=35.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
.++||||||+|.+||++|+.+++.|.+|+|+||.+..+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 46899999999999999999999999999999998653
No 227
>PLN02507 glutathione reductase
Probab=98.83 E-value=8.9e-08 Score=87.69 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~ 89 (300)
..+|||+|||||++|+.+|..+++.|.+|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3468999999999999999999999999999997
No 228
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.82 E-value=5.6e-08 Score=88.54 Aligned_cols=100 Identities=18% Similarity=0.327 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+... .+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d------------------~~------------------- 214 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNED------------------AE------------------- 214 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccC------------------HH-------------------
Confidence 46999999999999999999999999999998876521100 00
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc--CC--cEEEcCEEEEcCCCC
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV--NG--TRIYANIVIGCDGIR 213 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~--~g--~~~~ad~vV~A~G~~ 213 (300)
....+.+.|.+. |++++++++|++++.+++. +.+.+. +| +.+.+|.||.|+|..
T Consensus 215 -------------------~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 215 -------------------VSKEIAKQYKKL--GVKILTGTKVESIDDNGSK-VTVTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred -------------------HHHHHHHHHHHC--CCEEEECCEEEEEEEeCCe-EEEEEEecCCCeEEEEeCEEEECcCcc
Confidence 011333444433 8999999999999876554 334443 56 369999999999987
Q ss_pred hHh
Q 022277 214 SPI 216 (300)
Q Consensus 214 s~~ 216 (300)
...
T Consensus 273 pn~ 275 (466)
T PRK07818 273 PRV 275 (466)
T ss_pred cCC
Confidence 654
No 229
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=3e-08 Score=90.43 Aligned_cols=33 Identities=33% Similarity=0.621 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~ 89 (300)
..+||+|||||++|+++|..+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 468999999999999999999999999999998
No 230
>PRK14727 putative mercuric reductase; Provisional
Probab=98.81 E-value=6.4e-08 Score=88.36 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=35.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..++||+|||||++|+++|..|++.|.+|+|+|+.+.+
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~ 51 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI 51 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence 35799999999999999999999999999999998655
No 231
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.81 E-value=2e-08 Score=97.23 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+||||||||+++|+.|++.|++|+|+|+.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 3579999999999999999999999999999998865
No 232
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.80 E-value=3.6e-08 Score=88.64 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
.+.+|||||||.+|+.+|..|.+.+.+|+|||+.+..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 4579999999999999999998778999999988754
No 233
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=8.8e-09 Score=89.47 Aligned_cols=144 Identities=22% Similarity=0.337 Sum_probs=86.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-cCC-------CCceeeEchhHHHHHHHcCCcHHHHhcccccc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS-LRT-------GGTSLTLFKNGWSVLDALGVGSDLRSQFLEIK 127 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~-~~~-------~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 127 (300)
...+||||||||-||+.+|...+|.|.+.+++-.+-. ++. +|-+-+.-.+..+.| +.+-.......
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDAL------dGl~~rvcD~s 99 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDAL------DGLCSRVCDQS 99 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhh------cchHhhhhhhh
Confidence 3679999999999999999999999999888877642 211 222222111111111 11111111111
Q ss_pred ceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEc-CCc----eEEEEEcCCc
Q 022277 128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETS-GNG----VTILELVNGT 199 (300)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~-~~~----~~~v~~~~g~ 199 (300)
++.+.-.+-. .....+..-.+++|..+...|.+.+ ++..|+.+. |.++... ++. +.+|.+.+|.
T Consensus 100 ~vq~k~LNrs-------~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~dgt 171 (679)
T KOG2311|consen 100 GVQYKVLNRS-------KGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGA-VADLIVEDPDDGHCVVSGVVLVDGT 171 (679)
T ss_pred hhhHHHhhcc-------CCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhh-hhheeeccCCCCceEEEEEEEecCc
Confidence 1111110000 0111233445688888888888877 467777654 5555433 331 5689999999
Q ss_pred EEEcCEEEEcCCCC
Q 022277 200 RIYANIVIGCDGIR 213 (300)
Q Consensus 200 ~~~ad~vV~A~G~~ 213 (300)
.+.|+.||+.||.+
T Consensus 172 ~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 172 VVYAESVILTTGTF 185 (679)
T ss_pred EeccceEEEeeccc
Confidence 99999999999965
No 234
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.80 E-value=1.9e-08 Score=88.72 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=66.4
Q ss_pred cEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
+|||||||++|+.+|..|.++ +.+|+|+|+++....... . ..+......
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~----~-------------~~~~~g~~~----------- 52 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM----L-------------PGMIAGHYS----------- 52 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch----h-------------hHHHheeCC-----------
Confidence 589999999999999999754 689999998875421110 0 000000000
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
.... .. .+.+.+.+ .+++++.+ +|++++.+++. |.+++|+++.+|+||+|+|....
T Consensus 53 -------------~~~~-~~---~~~~~~~~--~gv~~~~~-~v~~id~~~~~---V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 53 -------------LDEI-RI---DLRRLARQ--AGARFVIA-EATGIDPDRRK---VLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred -------------HHHh-cc---cHHHHHHh--cCCEEEEE-EEEEEecccCE---EEECCCCcccccEEEEccCCCCC
Confidence 0000 00 11111211 27888765 79999877654 77888888999999999998664
No 235
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.80 E-value=8.5e-08 Score=86.58 Aligned_cols=94 Identities=19% Similarity=0.328 Sum_probs=70.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||++|+.+|..|++.|.+|+|+++.+.+... +..+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~------------------~d~~------------------- 190 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL------------------MDAD------------------- 190 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh------------------cCHH-------------------
Confidence 468999999999999999999999999999998754210 0000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s 214 (300)
-...+.+.|.+. |++++++++|++++. +. |.+.+|+.+.+|.|+.|+|...
T Consensus 191 -------------------~~~~l~~~l~~~--gI~i~~~~~v~~i~~--~~---v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 191 -------------------MNQPILDELDKR--EIPYRLNEEIDAING--NE---VTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred -------------------HHHHHHHHHHhc--CCEEEECCeEEEEeC--CE---EEECCCCEEEeCEEEECcCCCc
Confidence 011333444433 899999999999963 22 6677788899999999999865
No 236
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.79 E-value=7.5e-08 Score=87.62 Aligned_cols=101 Identities=25% Similarity=0.401 Sum_probs=72.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
...+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.+... .+
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d------------------~~------------------ 216 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTD------------------TE------------------ 216 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCC------------------HH------------------
Confidence 457999999999999999999999999999999876521100 00
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---C--CcEEEcCEEEEcCC
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---N--GTRIYANIVIGCDG 211 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~--g~~~~ad~vV~A~G 211 (300)
.+..+.+.|.+. |++++++++|++++.+++++. +.+. + ++.+.+|.||+|+|
T Consensus 217 --------------------~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G 273 (466)
T PRK06115 217 --------------------TAKTLQKALTKQ--GMKFKLGSKVTGATAGADGVS-LTLEPAAGGAAETLQADYVLVAIG 273 (466)
T ss_pred --------------------HHHHHHHHHHhc--CCEEEECcEEEEEEEcCCeEE-EEEEEcCCCceeEEEeCEEEEccC
Confidence 011333444333 899999999999987655532 4332 2 34799999999999
Q ss_pred CChHh
Q 022277 212 IRSPI 216 (300)
Q Consensus 212 ~~s~~ 216 (300)
..+..
T Consensus 274 ~~pn~ 278 (466)
T PRK06115 274 RRPYT 278 (466)
T ss_pred Ccccc
Confidence 87543
No 237
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.79 E-value=8.5e-08 Score=87.11 Aligned_cols=99 Identities=25% Similarity=0.386 Sum_probs=71.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+++|||||++|+.+|..|++.|.+|+|+|+.+.+.+... .+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d------------------~e------------------- 212 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGED------------------ED------------------- 212 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcccc------------------HH-------------------
Confidence 46899999999999999999999999999999876521100 00
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCCChH
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIRSP 215 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~s~ 215 (300)
-...+.+.|.+. |++++++++|++++.++.. +.+.. +| ..+.+|.||+|+|..+.
T Consensus 213 -------------------~~~~l~~~L~~~--GI~i~~~~~V~~i~~~~~~-v~~~~-~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 213 -------------------IAHILREKLEND--GVKIFTGAALKGLNSYKKQ-ALFEY-EGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred -------------------HHHHHHHHHHHC--CCEEEECCEEEEEEEcCCE-EEEEE-CCceEEEEeCEEEEecCCccC
Confidence 011333444433 8999999999999866544 32433 34 36899999999998765
Q ss_pred h
Q 022277 216 I 216 (300)
Q Consensus 216 ~ 216 (300)
.
T Consensus 270 ~ 270 (458)
T PRK06912 270 V 270 (458)
T ss_pred C
Confidence 4
No 238
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.79 E-value=7.1e-08 Score=87.82 Aligned_cols=100 Identities=21% Similarity=0.359 Sum_probs=72.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+.+... .+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d------------------~~------------------- 208 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREE------------------PE------------------- 208 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccC------------------HH-------------------
Confidence 47899999999999999999999999999999876521100 00
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---CCcEEEcCEEEEcCCCCh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g~~~~ad~vV~A~G~~s 214 (300)
....+.+.|.+. |++++++++|++++.+++. ..+.+. +++++++|.||+|+|...
T Consensus 209 -------------------~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 209 -------------------ISAAVEEALAEE--GIEVVTSAQVKAVSVRGGG-KIITVEKPGGQGEVEADELLVATGRRP 266 (463)
T ss_pred -------------------HHHHHHHHHHHc--CCEEEcCcEEEEEEEcCCE-EEEEEEeCCCceEEEeCEEEEeECCCc
Confidence 011233333333 8999999999999876554 334443 235799999999999866
Q ss_pred Hh
Q 022277 215 PI 216 (300)
Q Consensus 215 ~~ 216 (300)
..
T Consensus 267 ~~ 268 (463)
T TIGR02053 267 NT 268 (463)
T ss_pred CC
Confidence 43
No 239
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.79 E-value=7e-08 Score=85.48 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=67.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
.+|+|||||++|+.+|..|.+. ..+|+|+++.+........ +...+ .
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~---------------l~~~~-~--------------- 51 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPD---------------LSHVF-S--------------- 51 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCc---------------CcHHH-h---------------
Confidence 5899999999999999999886 4589999988754211000 00000 0
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHH----HHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILL----ETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~----~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (300)
......++. +.+.+.. +++++.+++|++++.++.. |.+ ++..+.+|.||+|+|.
T Consensus 52 -----------------~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~V~~id~~~~~---v~~-~~~~~~yd~LVlATG~ 109 (377)
T PRK04965 52 -----------------QGQRADDLTRQSAGEFAEQF-NLRLFPHTWVTDIDAEAQV---VKS-QGNQWQYDKLVLATGA 109 (377)
T ss_pred -----------------CCCCHHHhhcCCHHHHHHhC-CCEEECCCEEEEEECCCCE---EEE-CCeEEeCCEEEECCCC
Confidence 000001111 1122222 8899999999999876543 444 4567999999999998
Q ss_pred ChH
Q 022277 213 RSP 215 (300)
Q Consensus 213 ~s~ 215 (300)
...
T Consensus 110 ~~~ 112 (377)
T PRK04965 110 SAF 112 (377)
T ss_pred CCC
Confidence 653
No 240
>PRK13748 putative mercuric reductase; Provisional
Probab=98.78 E-value=1e-07 Score=89.00 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~ 90 (300)
..+||+|||||++|+++|..|++.|.+|+|+|+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999987
No 241
>PRK06370 mercuric reductase; Validated
Probab=98.78 E-value=9.6e-08 Score=86.95 Aligned_cols=100 Identities=25% Similarity=0.365 Sum_probs=72.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||+.|+.+|..|++.|.+|+++|+.+.+.+.- ..+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~------------------~~~------------------- 213 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRE------------------DED------------------- 213 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCccc------------------CHH-------------------
Confidence 4799999999999999999999999999999988652110 000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE--c-CCcEEEcCEEEEcCCCCh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL--V-NGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~--~-~g~~~~ad~vV~A~G~~s 214 (300)
....+.+.|.+ .|++++++++|++++.++++. .+.+ . ++..+.+|.||.|+|...
T Consensus 214 -------------------~~~~l~~~l~~--~GV~i~~~~~V~~i~~~~~~~-~v~~~~~~~~~~i~~D~Vi~A~G~~p 271 (463)
T PRK06370 214 -------------------VAAAVREILER--EGIDVRLNAECIRVERDGDGI-AVGLDCNGGAPEITGSHILVAVGRVP 271 (463)
T ss_pred -------------------HHHHHHHHHHh--CCCEEEeCCEEEEEEEcCCEE-EEEEEeCCCceEEEeCEEEECcCCCc
Confidence 01123333333 289999999999998766543 2333 2 335799999999999876
Q ss_pred Hh
Q 022277 215 PI 216 (300)
Q Consensus 215 ~~ 216 (300)
..
T Consensus 272 n~ 273 (463)
T PRK06370 272 NT 273 (463)
T ss_pred CC
Confidence 43
No 242
>PTZ00058 glutathione reductase; Provisional
Probab=98.78 E-value=6.1e-08 Score=89.48 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=33.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~ 90 (300)
..++||+|||||++|+.+|..+++.|.+|+|+|+.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 36799999999999999999999999999999986
No 243
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.77 E-value=1.4e-07 Score=86.18 Aligned_cols=100 Identities=17% Similarity=0.350 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+.+... .++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d------------------~~~------------------ 226 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAAD------------------EQV------------------ 226 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCC------------------HHH------------------
Confidence 46999999999999999999999999999999876521100 000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC--C--cEEEcCEEEEcCCCC
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN--G--TRIYANIVIGCDGIR 213 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~--g--~~~~ad~vV~A~G~~ 213 (300)
...+.+.|.+ .|++++++++|++++.+++++ .+.+.+ | +.+++|.|++|+|..
T Consensus 227 --------------------~~~~~~~l~~--~gi~i~~~~~v~~i~~~~~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 227 --------------------AKEAAKAFTK--QGLDIHLGVKIGEIKTGGKGV-SVAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred --------------------HHHHHHHHHH--cCcEEEeCcEEEEEEEcCCEE-EEEEEeCCCceeEEEcCEEEEccCCc
Confidence 1123333333 389999999999998776653 355544 3 469999999999987
Q ss_pred hHh
Q 022277 214 SPI 216 (300)
Q Consensus 214 s~~ 216 (300)
...
T Consensus 284 p~~ 286 (475)
T PRK06327 284 PNT 286 (475)
T ss_pred cCC
Confidence 654
No 244
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.77 E-value=4.9e-08 Score=85.35 Aligned_cols=125 Identities=23% Similarity=0.329 Sum_probs=85.6
Q ss_pred ccceeeecchhhHHHHHHh----hhhcc-C--CCCcEEEECCCHHHHHHHHHHHHc-------------CCcEEEEecCC
Q 022277 32 FCFQTRTRSRSKAIRLSIA----KAEAD-V--RKEDIVIVGAGIAGLATAVSLQRL-------------GIGSLVIEQAD 91 (300)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~----~~~~~-~--~~~dVvIIGgG~aGl~~A~~L~~~-------------G~~V~viE~~~ 91 (300)
+.+..++.+++..++.... ..... . ...+++|||||+.|.++|-+|+.+ .++|+|+|+.+
T Consensus 122 ~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p 201 (405)
T COG1252 122 YAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP 201 (405)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc
Confidence 4566788888877776443 11111 1 235799999999999999999752 14899999998
Q ss_pred CcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCC
Q 022277 92 SLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPP 171 (300)
Q Consensus 92 ~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g 171 (300)
.+.+... ..+ +....+.|.+. |
T Consensus 202 ~ILp~~~------------------~~l--------------------------------------~~~a~~~L~~~--G 223 (405)
T COG1252 202 RILPMFP------------------PKL--------------------------------------SKYAERALEKL--G 223 (405)
T ss_pred hhccCCC------------------HHH--------------------------------------HHHHHHHHHHC--C
Confidence 7632110 110 11223334333 9
Q ss_pred CeEEeCCeEEEEEEcCCceEEEEEcCCc-EEEcCEEEEcCCCC-hHhhhh
Q 022277 172 ESVQFSSELAKIETSGNGVTILELVNGT-RIYANIVIGCDGIR-SPIAKW 219 (300)
Q Consensus 172 ~~i~~~~~v~~i~~~~~~~~~v~~~~g~-~~~ad~vV~A~G~~-s~~r~~ 219 (300)
++|++++.|++++.+ + |.+++|+ .+.++.+|.|+|.. +++-+.
T Consensus 224 V~v~l~~~Vt~v~~~--~---v~~~~g~~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 224 VEVLLGTPVTEVTPD--G---VTLKDGEEEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred CEEEcCCceEEECCC--c---EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence 999999999999754 3 7788887 49999999999986 455555
No 245
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.77 E-value=1.2e-07 Score=86.30 Aligned_cols=33 Identities=36% Similarity=0.589 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~ 89 (300)
..+||+|||||++|+++|..|++.|.+|+|+|+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~ 34 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK 34 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 569999999999999999999999999999999
No 246
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.77 E-value=4.1e-08 Score=87.76 Aligned_cols=43 Identities=37% Similarity=0.730 Sum_probs=37.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceee
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLT 101 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~ 101 (300)
..||++|||||++|..+|..+++.|.+|.++|+.... +|....
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~l--GGtCln 45 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL--GGTCLN 45 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCc--CceEEe
Confidence 5799999999999999999999999999999999744 454433
No 247
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.75 E-value=4.9e-08 Score=94.15 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=70.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS 133 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~----G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 133 (300)
+.+|||||+|++|+.+|..|.++ +++|+||++.+.+..... .+...+.. ..
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~---------------~L~~~~~~--~~-------- 57 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV---------------HLSSYFSH--HT-------- 57 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC---------------cchHhHcC--CC--------
Confidence 45899999999999999999764 579999999987631110 00000000 00
Q ss_pred CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277 134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (300)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (300)
.... .... .+.+.+ .+++++.+++|+.+..+... |.+.+|+.+.+|.||+|+|..
T Consensus 58 ----------------~~~l-~~~~---~~~~~~--~gI~~~~g~~V~~Id~~~~~---V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 58 ----------------AEEL-SLVR---EGFYEK--HGIKVLVGERAITINRQEKV---IHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred ----------------HHHc-cCCC---HHHHHh--CCCEEEcCCEEEEEeCCCcE---EEECCCcEEECCEEEECCCCC
Confidence 0000 0000 111212 28899999999999775432 677888889999999999987
Q ss_pred hHh
Q 022277 214 SPI 216 (300)
Q Consensus 214 s~~ 216 (300)
...
T Consensus 113 p~~ 115 (847)
T PRK14989 113 PWI 115 (847)
T ss_pred cCC
Confidence 543
No 248
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.75 E-value=9.7e-08 Score=86.97 Aligned_cols=34 Identities=32% Similarity=0.626 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~ 90 (300)
..+||+|||||++|+++|..|+++|.+|+|+|+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3589999999999999999999999999999986
No 249
>PTZ00058 glutathione reductase; Provisional
Probab=98.75 E-value=1.3e-07 Score=87.25 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+.+. +..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------~d~~------------------- 279 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------FDET------------------- 279 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------CCHH-------------------
Confidence 579999999999999999999999999999998754210 0000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC-cEEEcCEEEEcCCCChH
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG-TRIYANIVIGCDGIRSP 215 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~~ad~vV~A~G~~s~ 215 (300)
....+.+.|.+. |+++++++.|.+++.++++.+.+...++ +++++|.|++|+|....
T Consensus 280 -------------------i~~~l~~~L~~~--GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 280 -------------------IINELENDMKKN--NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred -------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 011334444443 8999999999999876542233444444 47999999999997654
No 250
>PLN02546 glutathione reductase
Probab=98.75 E-value=3e-07 Score=84.96 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~ 89 (300)
.+|||+|||||++|..+|..++++|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 358999999999999999999999999999996
No 251
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.75 E-value=4.4e-08 Score=94.31 Aligned_cols=107 Identities=13% Similarity=0.137 Sum_probs=69.1
Q ss_pred EEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 61 IVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 61 VvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
|||||||++|+.+|..|.+. +++|+|||+.+.+..... .+.. +......
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~---------------~L~~-~l~g~~~------------ 52 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI---------------LLSS-VLQGEAD------------ 52 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc---------------cccH-HHCCCCC------------
Confidence 68999999999999999875 469999999987521100 0000 0000000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
.... .+.. .+.+.+ .+++++++++|+.++.+... |.+.+|+.+.+|.||+|+|.....
T Consensus 53 ------------~~~l-~~~~---~~~~~~--~gv~~~~g~~V~~Id~~~k~---V~~~~g~~~~yD~LVlATGs~p~~ 110 (785)
T TIGR02374 53 ------------LDDI-TLNS---KDWYEK--HGITLYTGETVIQIDTDQKQ---VITDAGRTLSYDKLILATGSYPFI 110 (785)
T ss_pred ------------HHHc-cCCC---HHHHHH--CCCEEEcCCeEEEEECCCCE---EEECCCcEeeCCEEEECCCCCcCC
Confidence 0000 0000 112222 28999999999999876543 778888889999999999986543
No 252
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.74 E-value=7.2e-08 Score=88.60 Aligned_cols=39 Identities=28% Similarity=0.524 Sum_probs=35.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
..++||+|||||.|||.+|+.++..|++|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 367899999999999999999999999999999988654
No 253
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.74 E-value=9.3e-08 Score=87.06 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
+||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999875
No 254
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.74 E-value=1.3e-07 Score=85.46 Aligned_cols=100 Identities=14% Similarity=0.211 Sum_probs=73.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
...+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.+... .+
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~------------------~~------------------ 200 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRED------------------RD------------------ 200 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcC------------------HH------------------
Confidence 346899999999999999999999999999999875421100 00
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
-...+.+.|.+. |++++++++|++++.+++. +.+.++++ .+.+|.||+|+|.....
T Consensus 201 --------------------~~~~l~~~l~~~--gV~v~~~~~v~~i~~~~~~-v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 201 --------------------IADNIATILRDQ--GVDIILNAHVERISHHENQ-VQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred --------------------HHHHHHHHHHhC--CCEEEeCCEEEEEEEcCCE-EEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 011233344333 8999999999999876554 34666555 58999999999987653
No 255
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.74 E-value=1.7e-07 Score=81.87 Aligned_cols=123 Identities=17% Similarity=0.196 Sum_probs=93.0
Q ss_pred CCccceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHH
Q 022277 30 SGFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSV 109 (300)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~ 109 (300)
....++.|..++++.+..... ....|++||+|..|+.+|..|...+.+|+++++.+.+...-
T Consensus 191 ~~nv~~ireieda~~l~~~~~------~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~l------------ 252 (478)
T KOG1336|consen 191 LKNVFYLREIEDANRLVAAIQ------LGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRL------------ 252 (478)
T ss_pred ccceeeeccHHHHHHHHHHhc------cCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhh------------
Confidence 334566677777766655544 46789999999999999999999999999999988662110
Q ss_pred HHHcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCC-
Q 022277 110 LDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGN- 188 (300)
Q Consensus 110 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~- 188 (300)
+..--+..+...+.+. |+++++++.+.+++.+++
T Consensus 253 -------------------------------------------f~~~i~~~~~~y~e~k--gVk~~~~t~~s~l~~~~~G 287 (478)
T KOG1336|consen 253 -------------------------------------------FGPSIGQFYEDYYENK--GVKFYLGTVVSSLEGNSDG 287 (478)
T ss_pred -------------------------------------------hhHHHHHHHHHHHHhc--CeEEEEecceeecccCCCC
Confidence 0001122344444444 899999999999998874
Q ss_pred ceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 189 GVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 189 ~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
.+..|.+.+|+++.||.||.+.|+.+.
T Consensus 288 ev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 288 EVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred cEEEEEeccCCEeccCeEEEeeccccc
Confidence 577899999999999999999998654
No 256
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.74 E-value=1.9e-07 Score=84.66 Aligned_cols=98 Identities=21% Similarity=0.393 Sum_probs=72.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+++|||||+.|+.+|..|++.|.+|+++|+.+.+.+. +..++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~d~~~------------------ 212 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH------------------LDEDI------------------ 212 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc------------------cCHHH------------------
Confidence 469999999999999999999999999999988754210 00000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
...+.+ +.+ .+++++++++|++++.++++ +.+.+.+|+++++|.|++|+|....
T Consensus 213 --------------------~~~l~~-~~~--~gI~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 213 --------------------SDRFTE-IAK--KKWDIRLGRNVTAVEQDGDG-VTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred --------------------HHHHHH-HHh--cCCEEEeCCEEEEEEEcCCe-EEEEEcCCCEEEcCEEEEeeccCcC
Confidence 012222 222 27899999999999876655 4477777888999999999997654
No 257
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.74 E-value=2.9e-08 Score=90.17 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=35.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
....+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 35689999999999999999999999999999998865
No 258
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.73 E-value=1.3e-08 Score=79.35 Aligned_cols=38 Identities=34% Similarity=0.501 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~ 94 (300)
...||+|||+|-+||++||..+++ .++|.|||..-.++
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 457999999999999999999965 67999999988774
No 259
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.73 E-value=8.8e-08 Score=80.33 Aligned_cols=37 Identities=30% Similarity=0.479 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
...+|+|||+|++||++|+.|+++ .+|+++|.+...+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlG 43 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLG 43 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEecccccc
Confidence 568999999999999999999987 8999999998775
No 260
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.72 E-value=1.4e-07 Score=82.37 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCCCeEEeC--------CeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcC
Q 022277 158 RRILLETLANQLPPESVQFS--------SELAKIETSGNGVTILELVNGTRIYANIVIGCD 210 (300)
Q Consensus 158 ~~~l~~~l~~~~~g~~i~~~--------~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~ 210 (300)
...+++.|.+..++..+.++ ++|..|..++.+-+.|++.||+.+.||.||+..
T Consensus 222 y~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTv 282 (498)
T KOG0685|consen 222 YKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTV 282 (498)
T ss_pred HHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEe
Confidence 34666777666655455544 999999988765566999999999999999764
No 261
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.72 E-value=2.3e-07 Score=83.61 Aligned_cols=98 Identities=22% Similarity=0.362 Sum_probs=71.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||++|+.+|..|++.|.+|+++++.+.+.... +..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~-----------------~~~~------------------- 180 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKL-----------------FDEE------------------- 180 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccc-----------------cCHH-------------------
Confidence 4699999999999999999999999999999887541000 0000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
....+.+.|.+. |++++++++|+++..++ . + +.+.+|+++.+|.||.|+|....
T Consensus 181 -------------------~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~-~-~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 181 -------------------MNQIVEEELKKH--EINLRLNEEVDSIEGEE-R-V-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred -------------------HHHHHHHHHHHc--CCEEEeCCEEEEEecCC-C-E-EEEcCCCEEEeCEEEECCCccCC
Confidence 011233333333 89999999999997543 3 2 45677888999999999998643
No 262
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.72 E-value=3.7e-08 Score=94.69 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4679999999999999999999999999999997655
No 263
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.71 E-value=2e-07 Score=83.39 Aligned_cols=118 Identities=26% Similarity=0.333 Sum_probs=83.7
Q ss_pred ceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHc
Q 022277 34 FQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDAL 113 (300)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~ 113 (300)
+..+...+...++.... ...+++|||+|++|+.+|..|+++|++|+++|+.+.+......
T Consensus 118 ~~~~~~~~~~~~~~~~~------~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-------------- 177 (415)
T COG0446 118 VTLRLREDAEALKGGAE------PPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-------------- 177 (415)
T ss_pred EEECCHHHHHHHHHHHh------ccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------
Confidence 44445555544444333 2689999999999999999999999999999999977321100
Q ss_pred CCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEE-
Q 022277 114 GVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTI- 192 (300)
Q Consensus 114 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~- 192 (300)
. .-...+.+.|.+. |++++++.++.+++...+....
T Consensus 178 ---~--------------------------------------~~~~~~~~~l~~~--gi~~~~~~~~~~i~~~~~~~~~~ 214 (415)
T COG0446 178 ---P--------------------------------------EVAEELAELLEKY--GVELLLGTKVVGVEGKGNTLVVE 214 (415)
T ss_pred ---H--------------------------------------HHHHHHHHHHHHC--CcEEEeCCceEEEEcccCcceee
Confidence 0 0011233333333 7899999999999987665332
Q ss_pred -EEEcCCcEEEcCEEEEcCCCCh
Q 022277 193 -LELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 193 -v~~~~g~~~~ad~vV~A~G~~s 214 (300)
+...++..+.+|.++.+.|...
T Consensus 215 ~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 215 RVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred EEEEeCCcEEEeeEEEEeecccc
Confidence 5677788899999999999766
No 264
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.69 E-value=2.3e-07 Score=85.10 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=73.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+++|||||++|+.+|..|++.|.+|+|+++.. +... +..+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~~------------------~d~~------------------- 223 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PLRG------------------FDRQ------------------- 223 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-cccc------------------CCHH-------------------
Confidence 4589999999999999999999999999998742 2100 0000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
....+.+.|.+. |+++++++.+++++..++. ..+.+.+|+++.+|.||.|.|..+..
T Consensus 224 -------------------~~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 224 -------------------CSEKVVEYMKEQ--GTLFLEGVVPINIEKMDDK-IKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred -------------------HHHHHHHHHHHc--CCEEEcCCeEEEEEEcCCe-EEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 012334444433 8999999999999876554 34777788889999999999987654
No 265
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.69 E-value=3.8e-08 Score=96.64 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+||||||+||++|..|+++|++|+|+|+.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3579999999999999999999999999999998765
No 266
>PLN02546 glutathione reductase
Probab=98.69 E-value=2.4e-07 Score=85.63 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=73.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
...+|+|||||..|+.+|..|++.|.+|+|+|+.+.+... +..+
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~------------------~d~~------------------ 294 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG------------------FDEE------------------ 294 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc------------------cCHH------------------
Confidence 4579999999999999999999999999999988754210 0000
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
.+..+.+.|.+. |+++++++++++++..+++...+.+.+++...+|.||.|.|.....
T Consensus 295 --------------------~~~~l~~~L~~~--GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 295 --------------------VRDFVAEQMSLR--GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred --------------------HHHHHHHHHHHC--CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 011233444333 8999999999999875444344666655445589999999987654
No 267
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.69 E-value=4.5e-07 Score=79.92 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=46.6
Q ss_pred HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCCC-hH-hhhhc
Q 022277 160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIR-SP-IAKWI 220 (300)
Q Consensus 160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~-s~-~r~~~ 220 (300)
+|.+.|.+.+ .|++++.+++|++++.+++++..|.+.++ ..++||.||+|+|+| |. +.+.+
T Consensus 264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 4455555544 48899999999999988887776776765 479999999999999 74 54444
No 268
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.68 E-value=6.5e-08 Score=87.54 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=34.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...++|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34689999999999999999999999999999998765
No 269
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.67 E-value=2.6e-07 Score=84.18 Aligned_cols=99 Identities=16% Similarity=0.314 Sum_probs=71.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+++|||||++|+.+|..|++.|.+|+|+|+.+.+.+.- ..++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~------------------d~~~------------------ 217 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAA------------------DKDI------------------ 217 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcC------------------CHHH------------------
Confidence 4699999999999999999999999999999988652110 0000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC--C--cEEEcCEEEEcCCCC
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN--G--TRIYANIVIGCDGIR 213 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~--g--~~~~ad~vV~A~G~~ 213 (300)
...+.+.|.+ .++++++++|++++..++++ .+.+.+ + +++++|.||.|+|..
T Consensus 218 --------------------~~~~~~~l~~---~v~i~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 218 --------------------VKVFTKRIKK---QFNIMLETKVTAVEAKEDGI-YVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred --------------------HHHHHHHHhh---ceEEEcCCEEEEEEEcCCEE-EEEEEeCCCcceEEEeCEEEEeeccc
Confidence 1122233322 26899999999998766653 355543 2 369999999999987
Q ss_pred hHh
Q 022277 214 SPI 216 (300)
Q Consensus 214 s~~ 216 (300)
...
T Consensus 274 pn~ 276 (471)
T PRK06467 274 PNG 276 (471)
T ss_pred ccC
Confidence 654
No 270
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.67 E-value=1.5e-07 Score=81.70 Aligned_cols=149 Identities=24% Similarity=0.277 Sum_probs=70.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCCcCCCCc----eeeEchhHHHHHHHcCCcHHHHhccccccceEEE
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTGGT----SLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVK 132 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~~~~~g~----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 132 (300)
.+|+|+||.||++|++|..|...+ +++..+||.+.+..... +..++ ..+|+++-.. .....+.....+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q---~~fl~Dlvt~---~~P~s~~sflnYL 75 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQ---VSFLKDLVTL---RDPTSPFSFLNYL 75 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-S---S-TTSSSSTT---T-TTSTTSHHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccc---cccccccCcC---cCCCCcccHHHHH
Confidence 479999999999999999999886 89999999887532211 00010 0001110000 0000000000000
Q ss_pred cCCCceEEEecCCCCCCCcceeeecHHH---HHHHHHhcCCCCeEEeCCeEEEEEEcCCc---eEEEEEc----CCcEEE
Q 022277 133 SEDGRELRSFGFKDEDASQEVRAVERRI---LLETLANQLPPESVQFSSELAKIETSGNG---VTILELV----NGTRIY 202 (300)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~---l~~~l~~~~~g~~i~~~~~v~~i~~~~~~---~~~v~~~----~g~~~~ 202 (300)
...+.... +- ......+.|.+ ++++.++++ ...++++++|++|+...+. .+.|.+. +++++.
T Consensus 76 ~~~~rl~~-f~------~~~~~~p~R~ef~dYl~Wva~~~-~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ 147 (341)
T PF13434_consen 76 HEHGRLYE-FY------NRGYFFPSRREFNDYLRWVAEQL-DNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYR 147 (341)
T ss_dssp HHTT-HHH-HH------HH--SS-BHHHHHHHHHHHHCCG-TTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEE
T ss_pred HHcCChhh-hh------hcCCCCCCHHHHHHHHHHHHHhC-CCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEE
Confidence 00000000 00 00111244554 455555665 3459999999999987543 5778773 345899
Q ss_pred cCEEEEcCCCChHhhhhc
Q 022277 203 ANIVIGCDGIRSPIAKWI 220 (300)
Q Consensus 203 ad~vV~A~G~~s~~r~~~ 220 (300)
|+.||+|+|....+.+.+
T Consensus 148 ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 148 ARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp ESEEEE----EE---GGG
T ss_pred eCeEEECcCCCCCCCcch
Confidence 999999999766665555
No 271
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.66 E-value=7e-08 Score=87.26 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQR--LGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~--~G~~V~viE~~~~~ 93 (300)
...+|+||||||+|+++|..|++ .|++|+|+|+.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 46799999999999999999987 79999999999876
No 272
>PRK14694 putative mercuric reductase; Provisional
Probab=98.66 E-value=3.2e-07 Score=83.59 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=70.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+++|||||++|+.+|..|++.|.+|+++++.... +.. ..+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l-~~~------------------~~~------------------- 219 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL-SQE------------------DPA------------------- 219 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC-CCC------------------CHH-------------------
Confidence 468999999999999999999999999999864321 000 000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
....+.+.|.+. |+++++++++++++.+++. +.+.++++ ++.+|.||+|+|..+..
T Consensus 220 -------------------~~~~l~~~l~~~--GI~v~~~~~v~~i~~~~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 220 -------------------VGEAIEAAFRRE--GIEVLKQTQASEVDYNGRE-FILETNAG-TLRAEQLLVATGRTPNT 275 (468)
T ss_pred -------------------HHHHHHHHHHhC--CCEEEeCCEEEEEEEcCCE-EEEEECCC-EEEeCEEEEccCCCCCc
Confidence 011333334333 8999999999999876554 33555554 69999999999987654
No 273
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.66 E-value=1.2e-07 Score=82.98 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 134 (300)
...+|||||||.+|+.+|..|.+.- .+|+++|+++...-..- ..++..
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~pl-----------------L~eva~------------- 51 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPL-----------------LYEVAT------------- 51 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchh-----------------hhhhhc-------------
Confidence 4578999999999999999999974 89999999986421000 000000
Q ss_pred CCceEEEecCCCCCCCcceeeecHHHHHH---HHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277 135 DGRELRSFGFKDEDASQEVRAVERRILLE---TLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~---~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (300)
..++..++.. .+.+...++++. ..+|++|+.++.. |.++++..+.+|++|+|.|
T Consensus 52 -------------------g~l~~~~i~~p~~~~~~~~~~v~~~-~~~V~~ID~~~k~---V~~~~~~~i~YD~LVvalG 108 (405)
T COG1252 52 -------------------GTLSESEIAIPLRALLRKSGNVQFV-QGEVTDIDRDAKK---VTLADLGEISYDYLVVALG 108 (405)
T ss_pred -------------------CCCChhheeccHHHHhcccCceEEE-EEEEEEEcccCCE---EEeCCCccccccEEEEecC
Confidence 0011111111 111111134554 4579999888766 7788877899999999999
Q ss_pred CChH
Q 022277 212 IRSP 215 (300)
Q Consensus 212 ~~s~ 215 (300)
....
T Consensus 109 s~~~ 112 (405)
T COG1252 109 SETN 112 (405)
T ss_pred CcCC
Confidence 8664
No 274
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.66 E-value=2.9e-07 Score=83.99 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=71.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+++|||||+.|+.+|..|++.|.+|+|+++. .+.+. +..+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~------------------~d~~------------------- 221 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG------------------FDQD------------------- 221 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccccc------------------cCHH-------------------
Confidence 458999999999999999999999999999974 32100 0000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC---cEEEcCEEEEcCCCCh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG---TRIYANIVIGCDGIRS 214 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g---~~~~ad~vV~A~G~~s 214 (300)
....+.+.|.+. |+++++++.+++++..++. ..|.+.++ +++.+|.||.|.|...
T Consensus 222 -------------------~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~~D~vl~a~G~~p 279 (484)
T TIGR01438 222 -------------------CANKVGEHMEEH--GVKFKRQFVPIKVEQIEAK-VKVTFTDSTNGIEEEYDTVLLAIGRDA 279 (484)
T ss_pred -------------------HHHHHHHHHHHc--CCEEEeCceEEEEEEcCCe-EEEEEecCCcceEEEeCEEEEEecCCc
Confidence 011334444433 8999999999999876554 33666555 3799999999999865
Q ss_pred Hh
Q 022277 215 PI 216 (300)
Q Consensus 215 ~~ 216 (300)
..
T Consensus 280 n~ 281 (484)
T TIGR01438 280 CT 281 (484)
T ss_pred CC
Confidence 44
No 275
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.66 E-value=9.7e-08 Score=87.49 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~ 90 (300)
.+||+|||||++|+++|..|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999973
No 276
>PRK14727 putative mercuric reductase; Provisional
Probab=98.64 E-value=3.6e-07 Score=83.44 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=71.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||++|+.+|..|++.|.+|+|+++.... ... ..+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l-~~~------------------d~~------------------- 229 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL-FRE------------------DPL------------------- 229 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC-Ccc------------------hHH-------------------
Confidence 468999999999999999999999999999975321 000 000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
....+.+.|.+. |++++++++|++++.+++. +.+.+.++ ++.+|.||+|+|.....
T Consensus 230 -------------------~~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~~-~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 230 -------------------LGETLTACFEKE--GIEVLNNTQASLVEHDDNG-FVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred -------------------HHHHHHHHHHhC--CCEEEcCcEEEEEEEeCCE-EEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 011233333333 8999999999999876655 33666665 59999999999998754
No 277
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.64 E-value=1.3e-07 Score=82.88 Aligned_cols=37 Identities=35% Similarity=0.430 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+|||||++|+++|..|++.|.+|+++|+.+.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4579999999999999999999999999999998866
No 278
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.64 E-value=1.5e-07 Score=85.75 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQA 90 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~ 90 (300)
.++||+|||||++|..+|..+++. |.+|+|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 569999999999999999999997 9999999984
No 279
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.64 E-value=8.6e-08 Score=90.76 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4579999999999999999999999999999998765
No 280
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.64 E-value=2.7e-07 Score=82.97 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=69.2
Q ss_pred CcEEEECCCHHHHHHHHHHHH--------------cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccc
Q 022277 59 EDIVIVGAGIAGLATAVSLQR--------------LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFL 124 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~--------------~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~ 124 (300)
.+|+|||||++|+.+|..|+. .|.+|+|+|+.+.+.+.- ..
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~------------------~~------- 228 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSF------------------DQ------- 228 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccC------------------CH-------
Confidence 489999999999999999985 378999999887652110 00
Q ss_pred cccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcC
Q 022277 125 EIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYAN 204 (300)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad 204 (300)
-....+.+.|.+. |++++++++|+++.. +. |.+++|+++.+|
T Consensus 229 -------------------------------~~~~~~~~~L~~~--gV~v~~~~~v~~v~~--~~---v~~~~g~~i~~d 270 (424)
T PTZ00318 229 -------------------------------ALRKYGQRRLRRL--GVDIRTKTAVKEVLD--KE---VVLKDGEVIPTG 270 (424)
T ss_pred -------------------------------HHHHHHHHHHHHC--CCEEEeCCeEEEEeC--CE---EEECCCCEEEcc
Confidence 0112344445443 999999999998863 33 668889899999
Q ss_pred EEEEcCCCCh
Q 022277 205 IVIGCDGIRS 214 (300)
Q Consensus 205 ~vV~A~G~~s 214 (300)
.||.|.|...
T Consensus 271 ~vi~~~G~~~ 280 (424)
T PTZ00318 271 LVVWSTGVGP 280 (424)
T ss_pred EEEEccCCCC
Confidence 9999999654
No 281
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.63 E-value=7.3e-07 Score=80.81 Aligned_cols=98 Identities=20% Similarity=0.326 Sum_probs=69.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||++|+.+|..|.+.|.+|+++++.+.+..... ..+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~-----------------~~~------------------- 192 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSF-----------------DKE------------------- 192 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhc-----------------CHH-------------------
Confidence 47899999999999999999999999999998775411000 000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s 214 (300)
-...+.+.|.+. |++++++++|++++.+ +.+..+.++++ .+.+|.||.|+|...
T Consensus 193 -------------------~~~~l~~~l~~~--gI~v~~~~~v~~i~~~-~~~~~v~~~~~-~i~~d~vi~a~G~~p 246 (444)
T PRK09564 193 -------------------ITDVMEEELREN--GVELHLNEFVKSLIGE-DKVEGVVTDKG-EYEADVVIVATGVKP 246 (444)
T ss_pred -------------------HHHHHHHHHHHC--CCEEEcCCEEEEEecC-CcEEEEEeCCC-EEEcCEEEECcCCCc
Confidence 011223333332 8999999999999653 34344555544 799999999999864
No 282
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.63 E-value=3.9e-07 Score=82.93 Aligned_cols=33 Identities=36% Similarity=0.567 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
.||+|||||++|+.+|..++++|.+|+|+|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 489999999999999999999999999999875
No 283
>PRK13748 putative mercuric reductase; Provisional
Probab=98.60 E-value=5.5e-07 Score=84.08 Aligned_cols=98 Identities=12% Similarity=0.204 Sum_probs=71.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||++|+.+|..|++.|.+|+|+++...+. .. ..+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-~~------------------d~~------------------- 311 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF-RE------------------DPA------------------- 311 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc-cc------------------CHH-------------------
Confidence 4689999999999999999999999999999753210 00 000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
....+.+.|.+. |++++++++|++++.+++. +.+.+.++ .+.+|.||+|+|.....
T Consensus 312 -------------------~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 312 -------------------IGEAVTAAFRAE--GIEVLEHTQASQVAHVDGE-FVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred -------------------HHHHHHHHHHHC--CCEEEcCCEEEEEEecCCE-EEEEecCC-eEEeCEEEEccCCCcCC
Confidence 011333444333 8999999999999876554 33666555 69999999999987654
No 284
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.60 E-value=5.6e-07 Score=82.92 Aligned_cols=94 Identities=24% Similarity=0.396 Sum_probs=70.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+..
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------------------------------------------ 389 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------------------------------------------ 389 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------------------------------------------
Confidence 46999999999999999999999999999997764310
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCCC
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGI 212 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~ 212 (300)
...+.+.|.+ ..|+++++++.+++++.+++++..|.+.+ | +.+.+|.||+|.|.
T Consensus 390 --------------------~~~l~~~l~~-~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 390 --------------------DKVLQDKLKS-LPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred --------------------hHHHHHHHhc-CCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 0012233322 23899999999999987655555566643 2 36899999999997
Q ss_pred Ch
Q 022277 213 RS 214 (300)
Q Consensus 213 ~s 214 (300)
..
T Consensus 449 ~P 450 (515)
T TIGR03140 449 VP 450 (515)
T ss_pred cC
Confidence 65
No 285
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.60 E-value=2.5e-07 Score=84.05 Aligned_cols=32 Identities=31% Similarity=0.602 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
+|+|||||++|+++|..+++.|.+|+|+|+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999875
No 286
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.5e-07 Score=78.97 Aligned_cols=149 Identities=27% Similarity=0.295 Sum_probs=92.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEE-EecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLV-IEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~v-iE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 134 (300)
...|||+||||||+|.++|...+|.|++.-| -||-. | +.++.+++..-+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG-----G----------QvldT~~IENfI--------------- 258 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG-----G----------QVLDTMGIENFI--------------- 258 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC-----C----------eeccccchhhee---------------
Confidence 3569999999999999999999999998644 34332 1 122222221100
Q ss_pred CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEc--CCceEEEEEcCCcEEEcCEEEEcC
Q 022277 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETS--GNGVTILELVNGTRIYANIVIGCD 210 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~ad~vV~A~ 210 (300)
......-.+|...|.+.. ..++++...+.++++.. +++...|++.+|..+.++.||+++
T Consensus 259 -----------------sv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlst 321 (520)
T COG3634 259 -----------------SVPETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILAT 321 (520)
T ss_pred -----------------ccccccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEec
Confidence 000112235666666655 26888888888888774 344577999999999999999999
Q ss_pred CCChHhhhhcCCCCCccccceE-EEEEeeCCCCCCCCCceEEEEeCC
Q 022277 211 GIRSPIAKWIGFSEPKYVGHCA-YRGLGYYPNGQPFEPKLNYIYGRG 256 (300)
Q Consensus 211 G~~s~~r~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 256 (300)
|+.=+ .++ .|....+.. =...|++.+..-|.....-..|.|
T Consensus 322 GArWR---n~n--vPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGG 363 (520)
T COG3634 322 GARWR---NMN--VPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGG 363 (520)
T ss_pred Ccchh---cCC--CCchHHHhhCCeeeCCCCCCcccCCceEEEECCC
Confidence 97421 122 332221110 012477776666776665555544
No 287
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.58 E-value=9.2e-07 Score=74.03 Aligned_cols=43 Identities=35% Similarity=0.638 Sum_probs=37.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCce
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~ 99 (300)
...||+|||+|.+||.+|.+|+.+|.+|+|+|+.....-+|.+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 4689999999999999999999999999999998876544443
No 288
>PRK10262 thioredoxin reductase; Provisional
Probab=98.58 E-value=8.6e-07 Score=76.80 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=70.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
...+|+|||+|..|+.+|..|++.|.+|+++++.+.+... .
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~--------------------~------------------- 185 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE--------------------K------------------- 185 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCC--------------------H-------------------
Confidence 3569999999999999999999999999999987643100 0
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC------cEEEcCEEEEcC
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG------TRIYANIVIGCD 210 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g------~~~~ad~vV~A~ 210 (300)
..+..+.+.|.+ .++++++++.++++..++.++..|++.++ +++.+|.||.|.
T Consensus 186 -------------------~~~~~~~~~l~~--~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~ 244 (321)
T PRK10262 186 -------------------ILIKRLMDKVEN--GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAI 244 (321)
T ss_pred -------------------HHHHHHHhhccC--CCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEe
Confidence 001122222222 27899999999999876544444555432 369999999999
Q ss_pred CCChH
Q 022277 211 GIRSP 215 (300)
Q Consensus 211 G~~s~ 215 (300)
|....
T Consensus 245 G~~p~ 249 (321)
T PRK10262 245 GHSPN 249 (321)
T ss_pred CCccC
Confidence 97654
No 289
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.58 E-value=3.1e-06 Score=75.10 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=52.2
Q ss_pred eeecHHHHHHHHHhcC-CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 154 RAVERRILLETLANQL-PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~-~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
..++...+...|.+.+ .|++++++++|++++.++++ +.|.+.+|..+.||.||+|+|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEG-WQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCe-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence 3578889999998877 47899999999999887665 6688888877999999999999984
No 290
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.57 E-value=1.9e-07 Score=84.81 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4579999999999999999999999999999999865
No 291
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.57 E-value=4.5e-07 Score=81.11 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HcCCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQ-RLGIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~-~~G~~V~viE~~~~~~ 94 (300)
...+|+||||||+|+.+|..|. +.|++|+|+|+.+.++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 5678999999999999999765 6799999999999873
No 292
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.57 E-value=4.9e-07 Score=84.80 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~ 90 (300)
+|||+|||||++|..+|..+++.|.+|+|+|+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 689999999999999999999999999999975
No 293
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.56 E-value=4e-07 Score=77.38 Aligned_cols=101 Identities=19% Similarity=0.331 Sum_probs=76.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
.+.+.+|||||.+||.++.-..+.|-+|+++|-.+.+.+.- ..++.
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m------------------D~Eis---------------- 255 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM------------------DGEIS---------------- 255 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc------------------CHHHH----------------
Confidence 56899999999999999999999999999999888663211 01111
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCC
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDG 211 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G 211 (300)
..+.+.|.+ .|++++++++|++++.+.++.+.|++.+ + ++++||.+.+|.|
T Consensus 256 ----------------------k~~qr~L~k--QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG 311 (506)
T KOG1335|consen 256 ----------------------KAFQRVLQK--QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIG 311 (506)
T ss_pred ----------------------HHHHHHHHh--cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEcc
Confidence 123333333 3899999999999999988655566543 2 3799999999999
Q ss_pred CChH
Q 022277 212 IRSP 215 (300)
Q Consensus 212 ~~s~ 215 (300)
+...
T Consensus 312 RrP~ 315 (506)
T KOG1335|consen 312 RRPF 315 (506)
T ss_pred Cccc
Confidence 7653
No 294
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.55 E-value=1.5e-07 Score=85.65 Aligned_cols=37 Identities=41% Similarity=0.586 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 4579999999999999999999999999999998865
No 295
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.54 E-value=1.2e-06 Score=79.84 Aligned_cols=101 Identities=21% Similarity=0.344 Sum_probs=69.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
...+|+|||||+.|+.+|..|++.|.+|+++|+.+.+.+. ...++
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~~----------------- 212 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------EDPEV----------------- 212 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------hhHHH-----------------
Confidence 3579999999999999999999999999999998765210 00000
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCCCh
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIRS 214 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~s 214 (300)
...+.+.|.+ . +++++++++++++.+++..+.+...++ +++.+|.||.|+|...
T Consensus 213 ---------------------~~~~~~~l~~--~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p 268 (460)
T PRK06292 213 ---------------------SKQAQKILSK--E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRP 268 (460)
T ss_pred ---------------------HHHHHHHHhh--c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCcc
Confidence 0122222222 2 789999999999876542222333333 4699999999999865
Q ss_pred Hh
Q 022277 215 PI 216 (300)
Q Consensus 215 ~~ 216 (300)
..
T Consensus 269 ~~ 270 (460)
T PRK06292 269 NT 270 (460)
T ss_pred CC
Confidence 44
No 296
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.54 E-value=1e-06 Score=82.74 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=70.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+.- ..++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~------------------d~ei------------------ 355 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLL------------------DADV------------------ 355 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccC------------------CHHH------------------
Confidence 4689999999999999999999999999999988652110 0000
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCc-eEEEEEcC-------C--------cEE
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNG-VTILELVN-------G--------TRI 201 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~-~~~v~~~~-------g--------~~~ 201 (300)
...+.+.+.+. .|++|+.++.|++++..++. .+.+.+.+ + +++
T Consensus 356 --------------------s~~l~~~ll~~-~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i 414 (659)
T PTZ00153 356 --------------------AKYFERVFLKS-KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKET 414 (659)
T ss_pred --------------------HHHHHHHHhhc-CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEE
Confidence 11222222221 38999999999999876543 13344321 1 269
Q ss_pred EcCEEEEcCCCChHh
Q 022277 202 YANIVIGCDGIRSPI 216 (300)
Q Consensus 202 ~ad~vV~A~G~~s~~ 216 (300)
++|.|++|+|.....
T Consensus 415 ~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 415 YVDSCLVATGRKPNT 429 (659)
T ss_pred EcCEEEEEECcccCC
Confidence 999999999987643
No 297
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.53 E-value=4.1e-07 Score=80.00 Aligned_cols=145 Identities=15% Similarity=0.184 Sum_probs=75.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CC-cEEEEecCCCcCCCCceeeEchhHHHHHH-----HcC-----CcHHHHhcccc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRL--GI-GSLVIEQADSLRTGGTSLTLFKNGWSVLD-----ALG-----VGSDLRSQFLE 125 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~--G~-~V~viE~~~~~~~~g~~~~~~~~~~~~l~-----~~g-----~~~~~~~~~~~ 125 (300)
++|+|||||++|+.+|.+|.+. .- .|.|+|+.+..+ .++.++...-..+- .+. +.+++.+....
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G---~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~ 78 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG---QGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQK 78 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC---CCccCCCCCchhhhccccccccccCCCCchHHHHHHHh
Confidence 6899999999999999999885 22 399999998863 33333222110000 000 11111111000
Q ss_pred ccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHH-------hcCCCCeE-EeCCeEEEEEEcC-CceEEEEEc
Q 022277 126 IKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLA-------NQLPPESV-QFSSELAKIETSG-NGVTILELV 196 (300)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~-------~~~~g~~i-~~~~~v~~i~~~~-~~~~~v~~~ 196 (300)
... ...-........-....|..+-++|. +..+...+ +..++++++.+.+ .+.+.+...
T Consensus 79 ---------~~~---~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~ 146 (474)
T COG4529 79 ---------QLQ---RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTA 146 (474)
T ss_pred ---------ccc---ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecC
Confidence 000 00000000011111233333333332 22222223 3467777777663 345668888
Q ss_pred CCcEEEcCEEEEcCCCChHhhh
Q 022277 197 NGTRIYANIVIGCDGIRSPIAK 218 (300)
Q Consensus 197 ~g~~~~ad~vV~A~G~~s~~r~ 218 (300)
+|....||.+|+|+|..-+...
T Consensus 147 ~g~~~~ad~~Vlatgh~~~~~~ 168 (474)
T COG4529 147 DGPSEIADIIVLATGHSAPPAD 168 (474)
T ss_pred CCCeeeeeEEEEeccCCCCCcc
Confidence 9988999999999997655443
No 298
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.51 E-value=1e-06 Score=80.47 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~ 90 (300)
++||+|||||++|+.+|+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999974
No 299
>PRK07208 hypothetical protein; Provisional
Probab=98.51 E-value=1.9e-07 Score=85.48 Aligned_cols=39 Identities=36% Similarity=0.520 Sum_probs=36.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
+...||+|||||++||++|+.|+++|++|+|+|+.+.++
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 356899999999999999999999999999999998874
No 300
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.50 E-value=7.1e-07 Score=79.04 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=42.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-CCCceeeEchhHHHHH
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVL 110 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~-~~g~~~~~~~~~~~~l 110 (300)
...+||+|||||.+|.-+|+-.+-+|++|.++|+.+... ...++..+-+.+.+.|
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYL 120 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYL 120 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHH
Confidence 356999999999999999999999999999999998653 2333444444444333
No 301
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.50 E-value=2.3e-07 Score=87.70 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+|||||++|+++|+.|++.|++|+|+|+.+.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4579999999999999999999999999999998876
No 302
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.47 E-value=6.5e-07 Score=82.23 Aligned_cols=126 Identities=27% Similarity=0.332 Sum_probs=91.8
Q ss_pred CCCCCCccceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchh
Q 022277 26 PQSSSGFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKN 105 (300)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~ 105 (300)
|.....-.+..|+.++..++.+... ....-+|||||.-||.+|..|...|++|+|++-.+.+..
T Consensus 119 PG~~~~~v~~~R~i~D~~am~~~ar------~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMe---------- 182 (793)
T COG1251 119 PGSDLPGVFVYRTIDDVEAMLDCAR------NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME---------- 182 (793)
T ss_pred CCCCCCCeeEEecHHHHHHHHHHHh------ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHH----------
Confidence 3444455678899999998887744 445589999999999999999999999999998775410
Q ss_pred HHHHHHHcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEE
Q 022277 106 GWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIET 185 (300)
Q Consensus 106 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~ 185 (300)
.++.. .-..+++...+.. |+++++++..+.+..
T Consensus 183 -----------rQLD~-----------------------------------~ag~lL~~~le~~-Gi~~~l~~~t~ei~g 215 (793)
T COG1251 183 -----------RQLDR-----------------------------------TAGRLLRRKLEDL-GIKVLLEKNTEEIVG 215 (793)
T ss_pred -----------Hhhhh-----------------------------------HHHHHHHHHHHhh-cceeecccchhhhhc
Confidence 00000 0012222222222 889999888877766
Q ss_pred cCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277 186 SGNGVTILELVNGTRIYANIVIGCDGIRSP 215 (300)
Q Consensus 186 ~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~ 215 (300)
++.+.+++++||..+.||.||.|+|....
T Consensus 216 -~~~~~~vr~~DG~~i~ad~VV~a~GIrPn 244 (793)
T COG1251 216 -EDKVEGVRFADGTEIPADLVVMAVGIRPN 244 (793)
T ss_pred -CcceeeEeecCCCcccceeEEEecccccc
Confidence 55667899999999999999999997653
No 303
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=2.1e-07 Score=82.60 Aligned_cols=37 Identities=38% Similarity=0.516 Sum_probs=34.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~ 95 (300)
.+|+|+|||+|||+||+.|+++|++|+|+|+++.++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 4799999999999999999999999999999998853
No 304
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.45 E-value=2.5e-06 Score=77.41 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
++||+|||+|++|..+|. +..|.+|.|+|+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence 589999999999998864 45799999999854
No 305
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.45 E-value=9.1e-07 Score=73.41 Aligned_cols=165 Identities=18% Similarity=0.209 Sum_probs=95.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCC--C-------CceeeEchhHHHH-------------HHH
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRT--G-------GTSLTLFKNGWSV-------------LDA 112 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~--~-------g~~~~~~~~~~~~-------------l~~ 112 (300)
..+|.||||||++|++.|.+|.-+ +++|.|+|+...+.. . ..++.+.|.+++. +++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e 126 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE 126 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh
Confidence 579999999999999999999877 999999999886531 1 2244555554311 111
Q ss_pred cCCc-------------------HHHHhcc--ccccceEEEcCCCceEEEecCC----CCCCCcceeeecHHHHHHHHHh
Q 022277 113 LGVG-------------------SDLRSQF--LEIKGMAVKSEDGRELRSFGFK----DEDASQEVRAVERRILLETLAN 167 (300)
Q Consensus 113 ~g~~-------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~l~~~l~~ 167 (300)
-++. +.+...+ ....++++... ..+..+... .....+....++...+...+.+
T Consensus 127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg--~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~e 204 (453)
T KOG2665|consen 127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEG--SEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGE 204 (453)
T ss_pred cCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeecc--chhhhcChhhhhhhhhcCCCcceeehHHHHHHHHH
Confidence 1111 1111110 01122222221 000000000 0011233345666666666666
Q ss_pred cC--CCCeEEeCCeEEEEEEcCCc----eEEEEEcCCcEEEcCEEEEcCCCChHhhhhc-CCC
Q 022277 168 QL--PPESVQFSSELAKIETSGNG----VTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS 223 (300)
Q Consensus 168 ~~--~g~~i~~~~~v~~i~~~~~~----~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~-g~~ 223 (300)
.+ .+..+..+-++.++.+..+. .+.|.-..+++++++.+|-|+|..|.....+ |.+
T Consensus 205 dF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~ 267 (453)
T KOG2665|consen 205 DFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCE 267 (453)
T ss_pred HHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCC
Confidence 55 37789999999999877652 2224444467899999999999988655444 654
No 306
>PRK07846 mycothione reductase; Reviewed
Probab=98.45 E-value=1.3e-06 Score=79.08 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=27.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
++|++|||||++|..+|.. ..|.+|+|+|+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 3899999999999988865 4699999999854
No 307
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.45 E-value=5.4e-07 Score=85.09 Aligned_cols=37 Identities=35% Similarity=0.569 Sum_probs=34.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+|||||++||++|..|++.|++|+|+|+.+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 4689999999999999999999999999999999876
No 308
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.43 E-value=6.9e-07 Score=81.59 Aligned_cols=37 Identities=38% Similarity=0.534 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3479999999999999999999999999999998865
No 309
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.42 E-value=3.4e-07 Score=84.08 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=34.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
.||+|||||++||++|..|+++|++|+|+|+++.++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999998774
No 310
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.40 E-value=3.5e-06 Score=77.73 Aligned_cols=94 Identities=21% Similarity=0.345 Sum_probs=70.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||||..|+.+|..|+..|.+|+|+++.+.+...
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~----------------------------------------- 389 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKAD----------------------------------------- 389 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccccc-----------------------------------------
Confidence 468999999999999999999999999999988754100
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCCC
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGI 212 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~ 212 (300)
..+.+.+. ..+|+++++++.+++++.+++.+..+.+.+ | +++.+|.|+.|.|.
T Consensus 390 ---------------------~~l~~~l~-~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 390 ---------------------QVLQDKLR-SLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred ---------------------HHHHHHHh-cCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 01222222 224899999999999987655555566543 3 25999999999997
Q ss_pred Ch
Q 022277 213 RS 214 (300)
Q Consensus 213 ~s 214 (300)
..
T Consensus 448 ~p 449 (517)
T PRK15317 448 VP 449 (517)
T ss_pred cc
Confidence 65
No 311
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.39 E-value=4.9e-06 Score=71.14 Aligned_cols=94 Identities=20% Similarity=0.345 Sum_probs=68.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR 137 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (300)
..+|+|||+|..|+.+|..|++.|.+|+++++.+....
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------------------------------------------ 178 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------------------------------------------ 178 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc------------------------------------------
Confidence 46899999999999999999999999999998763310
Q ss_pred eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---CC--cEEEcCEEEEcCCC
Q 022277 138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NG--TRIYANIVIGCDGI 212 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~ad~vV~A~G~ 212 (300)
...+.+.+.+ ..++++++++.+++++.++ ++..+.+. ++ .++.+|.||.|+|.
T Consensus 179 --------------------~~~~~~~l~~-~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 179 --------------------EKILLDRLRK-NPNIEFLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred --------------------CHHHHHHHHh-CCCeEEEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 0122233332 2388999999999998654 43344442 23 47999999999997
Q ss_pred ChH
Q 022277 213 RSP 215 (300)
Q Consensus 213 ~s~ 215 (300)
...
T Consensus 237 ~~~ 239 (300)
T TIGR01292 237 EPN 239 (300)
T ss_pred CCC
Confidence 653
No 312
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.37 E-value=3.2e-06 Score=72.03 Aligned_cols=42 Identities=33% Similarity=0.680 Sum_probs=37.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCcee
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSL 100 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~ 100 (300)
..+||+||||||.|-.+|+..++.|++..++|++... +|..+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L--GGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL--GGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc--Cceee
Confidence 6799999999999999999999999999999999877 44433
No 313
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.37 E-value=1.1e-06 Score=82.01 Aligned_cols=37 Identities=30% Similarity=0.567 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4579999999999999999999999999999999876
No 314
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.35 E-value=6.6e-06 Score=74.57 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
..+|+|||||..|+.+|..|.+.|.+|+++++...
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 46899999999999999999999999999998763
No 315
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.32 E-value=1.2e-06 Score=79.84 Aligned_cols=60 Identities=30% Similarity=0.491 Sum_probs=45.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCC--------Ccee--------eEchhHHHHHHHcCCcHHH
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG--------GTSL--------TLFKNGWSVLDALGVGSDL 119 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~--------g~~~--------~~~~~~~~~l~~~g~~~~~ 119 (300)
+|+|||||++||++|+.|+++|++|+|+|+++.++.. |..+ ...++..+.++++|+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence 5899999999999999999999999999999877421 1111 1134567788888876554
No 316
>PRK13984 putative oxidoreductase; Provisional
Probab=98.31 E-value=1.2e-06 Score=82.42 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=34.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
....+|+|||+|++|+++|..|+++|++|+|+|+.+.+
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34678999999999999999999999999999998865
No 317
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.31 E-value=7e-06 Score=72.43 Aligned_cols=93 Identities=27% Similarity=0.410 Sum_probs=64.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHH----cC--CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEE
Q 022277 58 KEDIVIVGAGIAGLATAVSLQR----LG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAV 131 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~----~G--~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 131 (300)
..+|+|||||++|+.+|..|++ +| .+|+|+ ..+.+... +
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~------------------~---------------- 189 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG------------------F---------------- 189 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc------------------C----------------
Confidence 4589999999999999999985 35 478888 33322100 0
Q ss_pred EcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277 132 KSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG 211 (300)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G 211 (300)
+. -.+..+.+.|.+. |+++++++++++++. +. |.+.+|+++.+|.||.|+|
T Consensus 190 ------------------~~----~~~~~~~~~l~~~--gV~v~~~~~v~~i~~--~~---v~~~~g~~i~~D~vi~a~G 240 (364)
T TIGR03169 190 ------------------PA----KVRRLVLRLLARR--GIEVHEGAPVTRGPD--GA---LILADGRTLPADAILWATG 240 (364)
T ss_pred ------------------CH----HHHHHHHHHHHHC--CCEEEeCCeeEEEcC--Ce---EEeCCCCEEecCEEEEccC
Confidence 00 0012333444443 899999999998853 22 6778888999999999999
Q ss_pred CCh
Q 022277 212 IRS 214 (300)
Q Consensus 212 ~~s 214 (300)
...
T Consensus 241 ~~p 243 (364)
T TIGR03169 241 ARA 243 (364)
T ss_pred CCh
Confidence 765
No 318
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.30 E-value=1.1e-06 Score=77.10 Aligned_cols=36 Identities=36% Similarity=0.566 Sum_probs=33.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
+||+|||||++|+++|..|++.|.+|+|+|+++.++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 699999999999999999999999999999987653
No 319
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.29 E-value=9.1e-06 Score=73.92 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||||..|+.+|..|.+.|. +|+++++.+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 45799999999999999999999998 899999865
No 320
>PLN02487 zeta-carotene desaturase
Probab=98.28 E-value=1.9e-06 Score=79.64 Aligned_cols=63 Identities=27% Similarity=0.459 Sum_probs=49.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC--------CCcee--------eEchhHHHHHHHcCCcHHHH
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--------GGTSL--------TLFKNGWSVLDALGVGSDLR 120 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~--------~g~~~--------~~~~~~~~~l~~~g~~~~~~ 120 (300)
..+|+|||||++||++|+.|+++|++|+|+|+.+.++. .|..+ +..++..++++++|+.+.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 35999999999999999999999999999999987742 12111 12356788899999876543
No 321
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=9.3e-06 Score=68.17 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=37.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeE
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL 102 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~ 102 (300)
+..+|.+|||||-+||+||.+.+..|.+|.++|--. +.+.|..+++
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~-PtP~GtsWGl 62 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK-PTPQGTSWGL 62 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc-cCCCCCcccc
Confidence 367999999999999999999999999999999643 3335555544
No 322
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.24 E-value=1.4e-06 Score=76.32 Aligned_cols=38 Identities=24% Similarity=0.616 Sum_probs=35.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
...+++|||||++|+++|+.|++.|++|.++||.+.++
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 35789999999999999999999999999999999874
No 323
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.21 E-value=7.7e-06 Score=71.14 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=69.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCcCCCCce----eeEchhHHHHHHHcCCcHHHHhccccccce
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTS----LTLFKNGWSVLDALGVGSDLRSQFLEIKGM 129 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~~~~g~~----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 129 (300)
....+|+|||||..+..++..|.+.+- +|+++=|+....+...+ ..+.|...+.+-.+. ++.+......
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~--~~~R~~~l~~--- 262 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLP--DEERRELLRE--- 262 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS---HHHHHHHHHH---
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCC--HHHHHHHHHH---
Confidence 357899999999999999999999875 89999998865432211 122333333332221 1111111000
Q ss_pred EEEcCCCceEEEecCCCCCCCcceeeecHHHH---HHHHHh-cC---CCCeEEeCCeEEEEEEcCCceEEEEEcCC----
Q 022277 130 AVKSEDGRELRSFGFKDEDASQEVRAVERRIL---LETLAN-QL---PPESVQFSSELAKIETSGNGVTILELVNG---- 198 (300)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l---~~~l~~-~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g---- 198 (300)
.....+..++...+ .+.+.+ .+ ..+.++.+++|++++..+++.+.+.+.+.
T Consensus 263 ------------------~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~ 324 (341)
T PF13434_consen 263 ------------------QRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGE 324 (341)
T ss_dssp ------------------TGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--
T ss_pred ------------------hHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCC
Confidence 00001111222211 111111 11 24789999999999998863466777652
Q ss_pred -cEEEcCEEEEcCCC
Q 022277 199 -TRIYANIVIGCDGI 212 (300)
Q Consensus 199 -~~~~ad~vV~A~G~ 212 (300)
..+++|.||+|||-
T Consensus 325 ~~~~~~D~VilATGy 339 (341)
T PF13434_consen 325 EETLEVDAVILATGY 339 (341)
T ss_dssp EEEEEESEEEE---E
T ss_pred eEEEecCEEEEcCCc
Confidence 37899999999994
No 324
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.20 E-value=1.5e-06 Score=77.97 Aligned_cols=36 Identities=36% Similarity=0.483 Sum_probs=34.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 379999999999999999999999999999999976
No 325
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.20 E-value=1.6e-05 Score=69.75 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD 91 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~ 91 (300)
..+|+|||+|..|+.+|..|.+.|.+ |+|+++..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 36899999999999999999999997 99999765
No 326
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.4e-05 Score=63.22 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=72.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc--CCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL--RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE 134 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~--~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 134 (300)
...+|+|||.||++-.+|+.++++.++-+++|-.-.- .++|.-.. .
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT-T------------------------------- 54 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT-T------------------------------- 54 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee-e-------------------------------
Confidence 3458999999999999999999999999999965422 12221000 0
Q ss_pred CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277 135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (300)
.+. +..+....-+.-.+|++.+.++. .|.+|... .|.++.....- ..+.++. +.+.||.||+|+|+
T Consensus 55 -------T~v--eNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskp-F~l~td~-~~v~~~avI~atGA 122 (322)
T KOG0404|consen 55 -------TDV--ENFPGFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKP-FKLWTDA-RPVTADAVILATGA 122 (322)
T ss_pred -------ecc--ccCCCCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccCCC-eEEEecC-CceeeeeEEEeccc
Confidence 000 00011111244457777777665 26666543 46777666554 4355544 46999999999997
Q ss_pred Ch
Q 022277 213 RS 214 (300)
Q Consensus 213 ~s 214 (300)
..
T Consensus 123 sA 124 (322)
T KOG0404|consen 123 SA 124 (322)
T ss_pred ce
Confidence 54
No 327
>PRK12831 putative oxidoreductase; Provisional
Probab=98.17 E-value=3e-05 Score=70.58 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
...+|+|||||.+|+.+|..|.+.|.+|+++++..
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 35799999999999999999999999999999865
No 328
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.14 E-value=3.6e-06 Score=70.16 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=34.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
.+|++|||+|++|+.+|..|+++|.+|+|+||++.++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 3799999999999999999999999999999999885
No 329
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.13 E-value=1.2e-06 Score=72.73 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=67.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-CC-cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRL-GI-GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS 133 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~-G~-~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 133 (300)
..++.|+|||||.+|+.+|..+.++ |. +|.|+|.....-... ++.+...++..|+.-
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQP-gfTLvGgGl~~l~~s-------------------- 95 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQP-GFTLVGGGLKSLDSS-------------------- 95 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCc-ceEEeccchhhhhhc--------------------
Confidence 3689999999999999999999876 55 899999876431100 111111111111100
Q ss_pred CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277 134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (300)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (300)
.+.+++.++........+|+++..+.+. |.+.+|++|.+|++|+|.|..
T Consensus 96 ----------------------------rr~~a~liP~~a~wi~ekv~~f~P~~N~---v~t~gg~eIsYdylviA~Giq 144 (446)
T KOG3851|consen 96 ----------------------------RRKQASLIPKGATWIKEKVKEFNPDKNT---VVTRGGEEISYDYLVIAMGIQ 144 (446)
T ss_pred ----------------------------cCcccccccCCcHHHHHHHHhcCCCcCe---EEccCCcEEeeeeEeeeeece
Confidence 0001111121122223567778777776 789999999999999999987
Q ss_pred hHh
Q 022277 214 SPI 216 (300)
Q Consensus 214 s~~ 216 (300)
-..
T Consensus 145 l~y 147 (446)
T KOG3851|consen 145 LDY 147 (446)
T ss_pred ecc
Confidence 654
No 330
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.13 E-value=1.3e-05 Score=69.72 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=50.3
Q ss_pred HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhhhc
Q 022277 160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI 220 (300)
Q Consensus 160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~ 220 (300)
.+...+++.+ .|.+|.++..|.+|..+++.+.+|.++||+.+.++.||--++.|-..-+.+
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 4445555444 388999999999999998888899999999999999998888888776666
No 331
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.11 E-value=4e-06 Score=80.10 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=35.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|+|||.||+||++|-+|.|.|+.|+|+||.+++
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 3579999999999999999999999999999999987
No 332
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.11 E-value=2.5e-06 Score=72.94 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~ 92 (300)
||+||||+|++|+.+|..|++.| .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999875
No 333
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.10 E-value=0.00011 Score=67.86 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=56.0
Q ss_pred eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc---CC--cEEEcCEEEEcCCCChH-hhhhcCCCCC
Q 022277 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV---NG--TRIYANIVIGCDGIRSP-IAKWIGFSEP 225 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~ad~vV~A~G~~s~-~r~~~g~~~~ 225 (300)
..++...+...+.+.+ .|++|+.+++|+++..+++++++|.+. +| ..+.|+.||+|+|.|+. +.+.+|...+
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~ 202 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDIR 202 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCCCc
Confidence 3578888888887766 589999999999999887776666653 34 26899999999999984 5555576544
Q ss_pred c
Q 022277 226 K 226 (300)
Q Consensus 226 ~ 226 (300)
.
T Consensus 203 i 203 (516)
T TIGR03377 203 M 203 (516)
T ss_pred e
Confidence 3
No 334
>PLN02529 lysine-specific histone demethylase 1
Probab=98.10 E-value=5.4e-06 Score=78.49 Aligned_cols=38 Identities=37% Similarity=0.594 Sum_probs=35.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
...+|+|||||++||++|..|+++|++|+|+|+++.++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G 196 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPG 196 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCc
Confidence 46899999999999999999999999999999988754
No 335
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.07 E-value=4.4e-06 Score=80.32 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=33.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
....+|+||||||||+++|+.|++.|++|+|+|+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 356899999999999999999999999999999863
No 336
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.06 E-value=6.2e-06 Score=78.60 Aligned_cols=38 Identities=34% Similarity=0.566 Sum_probs=35.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
...+|+|||||++|+++|+.|++.|++|+|+|++..++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence 45899999999999999999999999999999998764
No 337
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.05 E-value=5.6e-05 Score=70.40 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
...+|+|||||.+|+.+|..|++.|.+|+++++.+.
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 346899999999999999999999999999998764
No 338
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.02 E-value=8.5e-05 Score=67.85 Aligned_cols=106 Identities=14% Similarity=0.195 Sum_probs=66.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
...+|+|||||..|+.+|..+.+.|. +|++++....+..... .
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~------------------~------------------ 323 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRN------------------K------------------ 323 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccc------------------c------------------
Confidence 34689999999999999999999986 7887775553310000 0
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc-----CC---------cEE
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV-----NG---------TRI 201 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~-----~g---------~~~ 201 (300)
.. .... .......+.+.+. |+++++++.++++..+++.+..|.+. +| .++
T Consensus 324 ----------~~-~~~~---~~~~~~~~~~~~~--GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i 387 (471)
T PRK12810 324 ----------NN-PWPY---WPMKLEVSNAHEE--GVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVL 387 (471)
T ss_pred ----------cc-CCcc---cchHHHHHHHHHc--CCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEE
Confidence 00 0000 0000012222222 89999999999997555555444432 22 479
Q ss_pred EcCEEEEcCCCCh
Q 022277 202 YANIVIGCDGIRS 214 (300)
Q Consensus 202 ~ad~vV~A~G~~s 214 (300)
.+|.||.|.|...
T Consensus 388 ~~D~VI~A~G~~p 400 (471)
T PRK12810 388 PADLVLLAMGFTG 400 (471)
T ss_pred ECCEEEECcCcCC
Confidence 9999999999654
No 339
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.99 E-value=9e-06 Score=68.05 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=36.4
Q ss_pred CCeEEeCCeEEEEEEcCCceEEEEEcCCc--EEEcCEEEEcCCCC
Q 022277 171 PESVQFSSELAKIETSGNGVTILELVNGT--RIYANIVIGCDGIR 213 (300)
Q Consensus 171 g~~i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~ad~vV~A~G~~ 213 (300)
|+.++.+.+|.+.+...+++..|-+.++. .+++|..|.|+|..
T Consensus 272 Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 272 GGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSF 316 (421)
T ss_pred CceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecccc
Confidence 67788899999999998888888887764 57899999999964
No 340
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=97.97 E-value=7.6e-05 Score=61.85 Aligned_cols=77 Identities=18% Similarity=0.110 Sum_probs=66.0
Q ss_pred cCEEEEcCCCChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCCCCC
Q 022277 203 ANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPG 281 (300)
Q Consensus 203 ad~vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 281 (300)
|.++|+|||..|..|+.+....+ ...+.|.|..-.+...+.+...++++++...+++|+++.++++..+-+..+..+
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~--~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P 78 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKP--QVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLP 78 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCC--ceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccC
Confidence 78899999999999999984444 446678888888888888999999999999999999999999999999877433
No 341
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.96 E-value=7e-05 Score=65.65 Aligned_cols=74 Identities=20% Similarity=0.216 Sum_probs=51.0
Q ss_pred cHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC-cEEEcCEEEEcCCCCh-----------HhhhhcCC
Q 022277 157 ERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG-TRIYANIVIGCDGIRS-----------PIAKWIGF 222 (300)
Q Consensus 157 ~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~~ad~vV~A~G~~s-----------~~r~~~g~ 222 (300)
.-..+.+.|...+ .|++|+++++|++| ++++ +.+.+.++ ..++||.||+|+|..| .+.+.+|+
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~-~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh 160 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT-LRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGV 160 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc-EEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCC
Confidence 3446667776666 48999999999999 2333 55776543 4699999999999876 46677776
Q ss_pred CC-CccccceEE
Q 022277 223 SE-PKYVGHCAY 233 (300)
Q Consensus 223 ~~-~~~~~~~~~ 233 (300)
.. |.++..+.+
T Consensus 161 ~i~~~~PaL~pl 172 (376)
T TIGR03862 161 SVAPFAPANCGF 172 (376)
T ss_pred cccCCcCeeceE
Confidence 52 333444444
No 342
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.96 E-value=0.00034 Score=60.82 Aligned_cols=62 Identities=26% Similarity=0.300 Sum_probs=52.5
Q ss_pred eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
..++...+...|.+.+ .|++++.+++|++++.++++++.|.+.+| ++.||.||+|+|+++..
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 3577888888888776 58999999999999987777667888777 79999999999999854
No 343
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.96 E-value=1.1e-05 Score=72.04 Aligned_cols=34 Identities=26% Similarity=0.569 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
++||+|||+|++|+++|+.|++.|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999874
No 344
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.94 E-value=0.00011 Score=71.06 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD 91 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~ 91 (300)
..+|+|||||..|+.+|..+.+.|.+ |+|+++.+
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999997 99999875
No 345
>PRK02106 choline dehydrogenase; Validated
Probab=97.94 E-value=1.1e-05 Score=75.22 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-cCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQR-LGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~-~G~~V~viE~~~ 91 (300)
..+|+||||||.+|+.+|..|++ .|++|+|||+.+
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 56899999999999999999999 799999999995
No 346
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.89 E-value=2.6e-05 Score=69.97 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=37.4
Q ss_pred CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhh
Q 022277 171 PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIA 217 (300)
Q Consensus 171 g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r 217 (300)
+.+|+++++|++|+.+++++ .|.+.+|++++||.||+|.......+
T Consensus 223 g~~i~l~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 223 GGEIRLNTPVTRIEREDGGV-TVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp GGGEESSEEEEEEEEESSEE-EEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred CceeecCCcceecccccccc-ccccccceEEecceeeecCchhhhhh
Confidence 46899999999999999875 49999999999999999998655443
No 347
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.88 E-value=1.7e-05 Score=72.74 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=34.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
+||+|||+|++|+.+|+.|++.|++|+|||+....+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 699999999999999999999999999999998764
No 348
>PLN03000 amine oxidase
Probab=97.87 E-value=3.3e-05 Score=73.99 Aligned_cols=38 Identities=42% Similarity=0.618 Sum_probs=35.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
...+|+|||||++||.+|..|.+.|++|+|+|+++.++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 46899999999999999999999999999999998764
No 349
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.81 E-value=2.6e-05 Score=67.59 Aligned_cols=65 Identities=25% Similarity=0.394 Sum_probs=46.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc--EEEEecCCCcCC--------CCceeeEc-----------hhHHHHHHHcCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIG--SLVIEQADSLRT--------GGTSLTLF-----------KNGWSVLDALGV 115 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~--V~viE~~~~~~~--------~g~~~~~~-----------~~~~~~l~~~g~ 115 (300)
...+|+|||||++||++||+|++++.+ |+|+|+.++.+. ++.-+.-. ...+..+.++|+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl 89 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGL 89 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCc
Confidence 457999999999999999999999875 566999987642 11111111 234677788888
Q ss_pred cHHHHh
Q 022277 116 GSDLRS 121 (300)
Q Consensus 116 ~~~~~~ 121 (300)
.+++..
T Consensus 90 ~~e~~~ 95 (491)
T KOG1276|consen 90 EDELQP 95 (491)
T ss_pred cceeee
Confidence 766543
No 350
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.81 E-value=7.7e-05 Score=64.52 Aligned_cols=121 Identities=21% Similarity=0.331 Sum_probs=79.0
Q ss_pred eeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHc----CCcE-EEEecCCCcCCCCceeeEchhHHHHH
Q 022277 36 TRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRL----GIGS-LVIEQADSLRTGGTSLTLFKNGWSVL 110 (300)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~----G~~V-~viE~~~~~~~~g~~~~~~~~~~~~l 110 (300)
++...+-+.+...++ ....|-|||+|..|..+|+.|.+. |.+| .|+|.....
T Consensus 331 fr~p~DF~rlek~~a------ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm----------------- 387 (659)
T KOG1346|consen 331 FRYPADFKRLEKGLA------EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM----------------- 387 (659)
T ss_pred EecchHHHHHHHhhh------hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh-----------------
Confidence 345555555555544 568999999999999999999874 4444 233322211
Q ss_pred HHcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC
Q 022277 111 DALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN 188 (300)
Q Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~ 188 (300)
..|-+.-|.++-.++. .|+.++.+..|.++.....
T Consensus 388 -------------------------------------------~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~ 424 (659)
T KOG1346|consen 388 -------------------------------------------EKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK 424 (659)
T ss_pred -------------------------------------------hhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc
Confidence 0011112222222222 3899999999999988877
Q ss_pred ceEEEEEcCCcEEEcCEEEEcCCCC--hHhhhhcCCC
Q 022277 189 GVTILELVNGTRIYANIVIGCDGIR--SPIAKWIGFS 223 (300)
Q Consensus 189 ~~~~v~~~~g~~~~ad~vV~A~G~~--s~~r~~~g~~ 223 (300)
..+ +.++||.+++.|.||+|.|-. +.+.+.-|+.
T Consensus 425 nl~-lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLe 460 (659)
T KOG1346|consen 425 NLV-LKLSDGSELRTDLVVVAVGEEPNSELAEASGLE 460 (659)
T ss_pred ceE-EEecCCCeeeeeeEEEEecCCCchhhcccccce
Confidence 644 899999999999999999964 4444433433
No 351
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.79 E-value=0.00025 Score=70.38 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=69.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
..+|+|||+|+.|+.+|..|++.|. .|+|+|+.+...
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~------------------------------------------ 354 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS------------------------------------------ 354 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh------------------------------------------
Confidence 4799999999999999999999996 589998765320
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc----CCcEEEcCEEEEcCCC
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV----NGTRIYANIVIGCDGI 212 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~----~g~~~~ad~vV~A~G~ 212 (300)
..+.+.|.+. |++++.++.++.+..++ .+..|++. +++++.||.|+++.|.
T Consensus 355 ----------------------~~l~~~L~~~--GV~i~~~~~v~~i~g~~-~v~~V~l~~~~g~~~~i~~D~V~va~G~ 409 (985)
T TIGR01372 355 ----------------------PEARAEAREL--GIEVLTGHVVAATEGGK-RVSGVAVARNGGAGQRLEADALAVSGGW 409 (985)
T ss_pred ----------------------HHHHHHHHHc--CCEEEcCCeEEEEecCC-cEEEEEEEecCCceEEEECCEEEEcCCc
Confidence 0122333322 88999999999987543 33334443 4467999999999997
Q ss_pred ChH--hhhhcCC
Q 022277 213 RSP--IAKWIGF 222 (300)
Q Consensus 213 ~s~--~r~~~g~ 222 (300)
... +.+.+|.
T Consensus 410 ~Pnt~L~~~lg~ 421 (985)
T TIGR01372 410 TPVVHLFSQRGG 421 (985)
T ss_pred CchhHHHHhcCC
Confidence 653 4444443
No 352
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.79 E-value=0.00018 Score=63.41 Aligned_cols=105 Identities=18% Similarity=0.239 Sum_probs=68.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
...++|||||++|..|+..+...|. +++++-+........ ..+ .........
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr-------------------~~L-------s~~~~~~~~ 127 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDR-------------------ARL-------SKFLLTVGE 127 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccc-------------------hhc-------ccceeeccc
Confidence 5789999999999999999999886 566665444321100 000 000000000
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (300)
+.. . ...+.+.+. ++++++++.|+.++..+.. |.+.+|+++.++.+|+|||..
T Consensus 128 ~~a-----------------~---r~~e~Yke~--gIe~~~~t~v~~~D~~~K~---l~~~~Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 128 GLA-----------------K---RTPEFYKEK--GIELILGTSVVKADLASKT---LVLGNGETLKYSKLIIATGSS 180 (478)
T ss_pred ccc-----------------c---cChhhHhhc--CceEEEcceeEEeeccccE---EEeCCCceeecceEEEeecCc
Confidence 000 0 001112222 8899999999999887765 889999999999999999983
No 353
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.77 E-value=0.00038 Score=63.46 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~ 92 (300)
..+|+|||+|..|+.+|..+.+.|. +|+|+++.+.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 4689999999999999999999996 7999998764
No 354
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.75 E-value=0.00042 Score=65.96 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~ 92 (300)
..+|+|||||..|+.+|..+.+.|. +|+++.+.+.
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 4689999999999999999999997 6999988754
No 355
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.75 E-value=8.5e-05 Score=67.38 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
...+|+|||+|..|+..|..|++.+.+|+++.|..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 35689999999999999999999999999999865
No 356
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.75 E-value=0.00023 Score=61.65 Aligned_cols=150 Identities=23% Similarity=0.210 Sum_probs=84.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCCcCCCCce----eeEchhHHHHHHHcCCcHHHHhccccccceE
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTGGTS----LTLFKNGWSVLDALGVGSDLRSQFLEIKGMA 130 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~~~~~g~~----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 130 (300)
+...|++.||-||.-|++|..|...+ .++..+||.+.+...... ..++ ..+++++=- +...-.+...+.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQ---v~FlkDLVT---l~~PTs~ySFLN 76 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQ---VPFLKDLVT---LVDPTSPYSFLN 76 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCcccc---ccchhhhcc---ccCCCCchHHHH
Confidence 46799999999999999999999875 789999999987533221 1111 011111100 000000000111
Q ss_pred EEcCCCceEEEecCCCCCCCcceeeecHHHHH---HHHHhcCCCCeEEeCCeEEEEEEcC-CceEE--EEEcCCcEEEcC
Q 022277 131 VKSEDGRELRSFGFKDEDASQEVRAVERRILL---ETLANQLPPESVQFSSELAKIETSG-NGVTI--LELVNGTRIYAN 204 (300)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~---~~l~~~~~g~~i~~~~~v~~i~~~~-~~~~~--v~~~~g~~~~ad 204 (300)
.....++... + .......+.|.++. ++.+..+ -.++++++|++|...+ +.... +.+.++..++|+
T Consensus 77 YL~~h~RLy~-F------l~~e~f~i~R~Ey~dY~~Waa~~l--~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar 147 (436)
T COG3486 77 YLHEHGRLYE-F------LNYETFHIPRREYNDYCQWAASQL--PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRAR 147 (436)
T ss_pred HHHHcchHhh-h------hhhhcccccHHHHHHHHHHHHhhC--CccccCCeeccccccCCcceeEEEEEcCCCcEEEee
Confidence 1111111100 0 01122335555554 4445554 3688899999774332 23333 677778899999
Q ss_pred EEEEcCCCChHhhhhc
Q 022277 205 IVIGCDGIRSPIAKWI 220 (300)
Q Consensus 205 ~vV~A~G~~s~~r~~~ 220 (300)
-||+.+|....+...+
T Consensus 148 ~lVlg~G~~P~IP~~f 163 (436)
T COG3486 148 NLVLGVGTQPYIPPCF 163 (436)
T ss_pred eEEEccCCCcCCChHH
Confidence 9999999877654444
No 357
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.73 E-value=0.00022 Score=63.62 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
..+||||+|-|+.-+.+|..|++.|.+|+.+|+++.-+
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG 40 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence 67999999999999999999999999999999998654
No 358
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.71 E-value=0.00023 Score=65.23 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=34.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSL 93 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~~ 93 (300)
...||.||||||-||+.+|..|++. ..+|+|+|+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 3579999999999999999999997 6899999998765
No 359
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.70 E-value=0.0005 Score=65.34 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||||..|+.+|..+.+.|. +|+|+++..
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 45799999999999999999999997 599999776
No 360
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.67 E-value=0.00029 Score=62.98 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=66.3
Q ss_pred CCcEEEECCCHHHHHHH-HHHH----HcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEE
Q 022277 58 KEDIVIVGAGIAGLATA-VSLQ----RLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVK 132 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A-~~L~----~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 132 (300)
..| +|++.|+.|+..+ ..++ +.|.+|++++..+...++
T Consensus 216 ~~~-~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG------------------------------------ 258 (422)
T PRK05329 216 DAE-AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG------------------------------------ 258 (422)
T ss_pred CCC-EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch------------------------------------
Confidence 345 6799999999998 5554 469999999988754211
Q ss_pred cCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCc--EEEcCEEEE
Q 022277 133 SEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGT--RIYANIVIG 208 (300)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~ad~vV~ 208 (300)
.++.+.|.+.+ .|++++.+++|++++.+++++..+...+|+ .+++|.||+
T Consensus 259 --------------------------~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVL 312 (422)
T PRK05329 259 --------------------------LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVL 312 (422)
T ss_pred --------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEE
Confidence 02222332222 388999999999999877765544454553 589999999
Q ss_pred cCCCCh
Q 022277 209 CDGIRS 214 (300)
Q Consensus 209 A~G~~s 214 (300)
|+|...
T Consensus 313 AtGrf~ 318 (422)
T PRK05329 313 ATGSFF 318 (422)
T ss_pred eCCCcc
Confidence 999753
No 361
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.66 E-value=4.7e-05 Score=70.48 Aligned_cols=36 Identities=39% Similarity=0.520 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
..++|+||||+|.+|+.+|..|+..|++|+|+|+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 367999999999999999999998899999999985
No 362
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.66 E-value=0.00054 Score=67.45 Aligned_cols=34 Identities=18% Similarity=0.421 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
..+|+|||||.+|+-+|..+.+.|.+|+++.+.+
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4689999999999999999999999999998775
No 363
>PLN02976 amine oxidase
Probab=97.65 E-value=8.1e-05 Score=74.22 Aligned_cols=38 Identities=39% Similarity=0.629 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~ 94 (300)
...+|+|||||++|+++|+.|++.|++|+|+|+.+.++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG 729 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence 45899999999999999999999999999999987663
No 364
>PRK13984 putative oxidoreductase; Provisional
Probab=97.63 E-value=0.00061 Score=64.34 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=26.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC------cEEEEe
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGI------GSLVIE 88 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~------~V~viE 88 (300)
..+|+|||||..|+.+|..|.+.|. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4799999999999999999998753 566653
No 365
>PLN02785 Protein HOTHEAD
Probab=97.63 E-value=7.2e-05 Score=69.80 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
...+|+||||||.+|+.+|..|++ +.+|+|||+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 346999999999999999999999 699999999874
No 366
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.60 E-value=0.00021 Score=62.17 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=67.0
Q ss_pred CcEEEECCCHHHHHHHHHHHH--------------cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccc
Q 022277 59 EDIVIVGAGIAGLATAVSLQR--------------LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFL 124 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~--------------~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~ 124 (300)
..++||||||.|.+.|.+|+. .-++|+++|..+.+. ..++ .
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-------------~mFd------k------ 273 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-------------NMFD------K------ 273 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-------------HHHH------H------
Confidence 579999999999999999974 246799999888541 1110 0
Q ss_pred cccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCc--EEE
Q 022277 125 EIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGT--RIY 202 (300)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~ 202 (300)
...++.+.+... .+++++.++.|..++.++ ..+.+.+|+ .|.
T Consensus 274 --------------------------------rl~~yae~~f~~-~~I~~~~~t~Vk~V~~~~---I~~~~~~g~~~~iP 317 (491)
T KOG2495|consen 274 --------------------------------RLVEYAENQFVR-DGIDLDTGTMVKKVTEKT---IHAKTKDGEIEEIP 317 (491)
T ss_pred --------------------------------HHHHHHHHHhhh-ccceeecccEEEeecCcE---EEEEcCCCceeeec
Confidence 001222222222 288999999999886443 336666664 688
Q ss_pred cCEEEEcCCCCh-Hhhhhc
Q 022277 203 ANIVIGCDGIRS-PIAKWI 220 (300)
Q Consensus 203 ad~vV~A~G~~s-~~r~~~ 220 (300)
+-.+|.|+|... ++-+.+
T Consensus 318 YG~lVWatG~~~rp~~k~l 336 (491)
T KOG2495|consen 318 YGLLVWATGNGPRPVIKDL 336 (491)
T ss_pred ceEEEecCCCCCchhhhhH
Confidence 999999999754 333333
No 367
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.59 E-value=5.8e-05 Score=70.04 Aligned_cols=46 Identities=33% Similarity=0.330 Sum_probs=36.4
Q ss_pred CCCeEEeCCeEEEEEEcCCceEEEEEcCC-c---EEEcCEEEEcCCC-ChH
Q 022277 170 PPESVQFSSELAKIETSGNGVTILELVNG-T---RIYANIVIGCDGI-RSP 215 (300)
Q Consensus 170 ~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~---~~~ad~vV~A~G~-~s~ 215 (300)
++++|+.+++|++|..+++.+++|++.++ . .+.++.||+|.|+ +|+
T Consensus 207 ~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP 257 (532)
T TIGR01810 207 PNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSP 257 (532)
T ss_pred CCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCH
Confidence 47999999999999988776777777543 2 3589999999998 453
No 368
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.59 E-value=0.00083 Score=65.77 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-C-CcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL-G-IGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~-G-~~V~viE~~~ 91 (300)
...+|+|||||.+|+.+|..+.+. | .+|+++.+.+
T Consensus 667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 667 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 357999999999999999998887 5 3899999876
No 369
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.57 E-value=0.0025 Score=54.19 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=34.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+|.+|||||-.|++.|...+..|.+|.|+|..-..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l 55 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL 55 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCc
Confidence 35899999999999999999999999999999977544
No 370
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=8.7e-05 Score=62.28 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
....|.|||||.||..+|++++++|++|.++|.++.-
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 3467899999999999999999999999999998743
No 371
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.49 E-value=0.00029 Score=59.70 Aligned_cols=101 Identities=18% Similarity=0.264 Sum_probs=74.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 135 (300)
..+.+++|||||.+++..|--++-.|-++.++=|.+.+..+- ++
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~F-------------------D~----------------- 230 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGF-------------------DE----------------- 230 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcch-------------------hH-----------------
Confidence 367899999999999999999999999999998887652110 00
Q ss_pred CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s 214 (300)
.-+..+.+.|... |++++.++.++.+....++...+....|.....|.|+.|.|+..
T Consensus 231 --------------------~i~~~v~~~~~~~--ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~P 287 (478)
T KOG0405|consen 231 --------------------MISDLVTEHLEGR--GINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKP 287 (478)
T ss_pred --------------------HHHHHHHHHhhhc--ceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCC
Confidence 1122333333333 89999999999999887764446666665455999999999753
No 372
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.46 E-value=0.00059 Score=62.57 Aligned_cols=34 Identities=32% Similarity=0.574 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
..+|+|||+|.+|+++|..|+++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4589999999999999999999999999999765
No 373
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=97.44 E-value=9.6e-05 Score=60.06 Aligned_cols=33 Identities=33% Similarity=0.574 Sum_probs=27.5
Q ss_pred EEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCc
Q 022277 61 IVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSL 93 (300)
Q Consensus 61 VvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~ 93 (300)
.+|||||+||.+||..|+.. ..+|+++-..+..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 68999999999999999976 4578888776643
No 374
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.42 E-value=0.0022 Score=57.41 Aligned_cols=36 Identities=42% Similarity=0.483 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCcC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLR 94 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~----G~~V~viE~~~~~~ 94 (300)
.++=|||+|+|+|++|.+|-|. |-+|+|+|+.+.++
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~G 42 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPG 42 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCC
Confidence 5677999999999999999885 55899999988654
No 375
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.35 E-value=0.0025 Score=63.43 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~ 91 (300)
...+|+|||||.+|+-+|..+.+.|.+ |+++.+..
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 457999999999999999999999985 77777654
No 376
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0031 Score=53.94 Aligned_cols=94 Identities=21% Similarity=0.296 Sum_probs=70.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
...+|+|||||-+.+.-|+.|++.+-+|+++-|.+.++..
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~---------------------------------------- 181 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAE---------------------------------------- 181 (305)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcC----------------------------------------
Confidence 3459999999999999999999999999999999866310
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC--C--cEEEcCEEEEcCCC
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN--G--TRIYANIVIGCDGI 212 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~--g--~~~~ad~vV~A~G~ 212 (300)
..+.+.+.+. +++.+++++++.++.-++ +..|.+++ | +.+.+|-|..+.|.
T Consensus 182 ----------------------~~~~~~l~~~-~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~iG~ 236 (305)
T COG0492 182 ----------------------EILVERLKKN-VKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIAIGH 236 (305)
T ss_pred ----------------------HHHHHHHHhc-CCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEecCC
Confidence 0222333222 267999999999998665 34466655 3 26889999999997
Q ss_pred ChH
Q 022277 213 RSP 215 (300)
Q Consensus 213 ~s~ 215 (300)
...
T Consensus 237 ~p~ 239 (305)
T COG0492 237 LPN 239 (305)
T ss_pred CCc
Confidence 654
No 377
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.33 E-value=0.0035 Score=58.71 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=43.8
Q ss_pred HHHHHHHHhcC--CCCeEEeCCeEEEEEEc-CCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277 159 RILLETLANQL--PPESVQFSSELAKIETS-GNGVTILEL---VNGT--RIYANIVIGCDGIRSPI 216 (300)
Q Consensus 159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~-~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~ 216 (300)
..+...|.+.+ .|++++.++.++++..+ ++.+.+|.. .+|+ .+.|+.||+|||..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 35666666655 48999999999999875 456666654 3554 57899999999998754
No 378
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.27 E-value=0.003 Score=62.22 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL-GI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~-~V~viE~~~ 91 (300)
...+|+|||||.+|+.+|..+.+. |. +|+++++..
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 457999999999999999999886 86 799999876
No 379
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00061 Score=58.44 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~ 93 (300)
....|.|||+||||..+|..|.++ ++.|.|+|+.+.+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 345999999999999999999985 6899999999865
No 380
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.23 E-value=0.0017 Score=58.08 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=35.6
Q ss_pred CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277 171 PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI 216 (300)
Q Consensus 171 g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~ 216 (300)
++.++.+++|+++...... |.+.+| .+.+|.+|+|+|+....
T Consensus 67 ~i~~~~~~~v~~id~~~~~---v~~~~g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 67 GIDVRTGTEVTSIDPENKV---VLLDDG-EIEYDYLVLATGARPRP 108 (415)
T ss_pred CCEEeeCCEEEEecCCCCE---EEECCC-cccccEEEEcCCCcccC
Confidence 7799999999999877665 678888 79999999999987654
No 381
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.17 E-value=0.003 Score=59.99 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~ 92 (300)
..+|+|||+|..|+.+|..+.+.|. +|+++++.+.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4789999999999999999999996 7999998754
No 382
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.17 E-value=0.0033 Score=58.59 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=72.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS 133 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 133 (300)
...+++|||-|++|..+.-++.+. -++|+|+-..+.+...- ..++ .+.+.....+.
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~R--i~Ls--------------~vl~~~~~~ed----- 60 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNR--ILLS--------------SVLAGEKTAED----- 60 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccc--eeec--------------cccCCCccHHH-----
Confidence 356899999999999999999883 45899988777652100 0000 00000000000
Q ss_pred CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277 134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213 (300)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 213 (300)
..+....+. ++ .+++++.+.+|+.+..++.. |.++.|..+.+|.+|+|+|..
T Consensus 61 --------------------i~l~~~dwy----~~-~~i~L~~~~~v~~idr~~k~---V~t~~g~~~~YDkLilATGS~ 112 (793)
T COG1251 61 --------------------ISLNRNDWY----EE-NGITLYTGEKVIQIDRANKV---VTTDAGRTVSYDKLIIATGSY 112 (793)
T ss_pred --------------------HhccchhhH----HH-cCcEEEcCCeeEEeccCcce---EEccCCcEeecceeEEecCcc
Confidence 001111111 11 28999999999999877654 788999999999999999987
Q ss_pred hHhh
Q 022277 214 SPIA 217 (300)
Q Consensus 214 s~~r 217 (300)
..+-
T Consensus 113 pfi~ 116 (793)
T COG1251 113 PFIL 116 (793)
T ss_pred cccc
Confidence 7653
No 383
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0024 Score=54.32 Aligned_cols=78 Identities=21% Similarity=0.369 Sum_probs=57.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
...||+|||||-.|+.+|+-|+--=-.|+++|=.+...
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------------------------------------------ 390 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------------------------------------------ 390 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh------------------------------------------
Confidence 45799999999999999999987656899999666431
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN 197 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~ 197 (300)
...+++.-+..+++++|..+..-+++.-+++++.++...+
T Consensus 391 ---------------------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~d 430 (520)
T COG3634 391 ---------------------ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRD 430 (520)
T ss_pred ---------------------hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEe
Confidence 0122222233446899999999999987777776666654
No 384
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.10 E-value=0.0088 Score=54.91 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~ 93 (300)
...+|+|||||..|+.+|..+.+.|. +|+++|+.+..
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~ 319 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKP 319 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 34689999999999999888888875 79999987754
No 385
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.10 E-value=0.0013 Score=60.68 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
...+|+|||+|.+|+-.|..|++...+|.+.-|...
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 457999999999999999999999889999888764
No 386
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.05 E-value=0.0081 Score=56.28 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~ 92 (300)
...+|+|||||..|+.+|..+.+.| .+|+|+.+.+.
T Consensus 266 ~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~ 302 (564)
T PRK12771 266 LGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTR 302 (564)
T ss_pred CCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCc
Confidence 3578999999999999999999988 57888887753
No 387
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.90 E-value=0.0012 Score=52.05 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.|.|||+|..|...|..+++.|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 489999999999999999999999999999774
No 388
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.85 E-value=0.0093 Score=52.24 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=34.3
Q ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...+.+|||+|.|.+|+++...|...-++|+|+..+..+
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF 90 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF 90 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhccccccceEEeccccce
Confidence 446789999999999999999999999999999987753
No 389
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.84 E-value=0.0015 Score=50.25 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
+|.|||||..|.++|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999986
No 390
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0036 Score=53.06 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=70.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG 136 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (300)
.+-+-+|||||.++|.||-+|+-.|++|+|.=|+=-.+ | ...++
T Consensus 197 ~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~Lr--G-----------------FDqdm----------------- 240 (503)
T KOG4716|consen 197 EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLR--G-----------------FDQDM----------------- 240 (503)
T ss_pred CCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecc--c-----------------ccHHH-----------------
Confidence 45689999999999999999999999999987764331 1 11111
Q ss_pred ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCC
Q 022277 137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDG 211 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G 211 (300)
...+.+.|.+. |+.+.-.+..+.+++.+++...|..++ + ..-++|.|+.|.|
T Consensus 241 ---------------------ae~v~~~m~~~--Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiG 297 (503)
T KOG4716|consen 241 ---------------------AELVAEHMEER--GIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIG 297 (503)
T ss_pred ---------------------HHHHHHHHHHh--CCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhc
Confidence 01233334333 888888888888988877654454432 2 2457899999999
Q ss_pred CChHhh
Q 022277 212 IRSPIA 217 (300)
Q Consensus 212 ~~s~~r 217 (300)
+.+..+
T Consensus 298 R~~~~~ 303 (503)
T KOG4716|consen 298 RKALTD 303 (503)
T ss_pred cccchh
Confidence 877553
No 391
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.70 E-value=0.0018 Score=51.17 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=27.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
+|.|||.|..||.+|..|++.|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 689999999999999999999999999998874
No 392
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0031 Score=51.56 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=42.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-------CCceeeEchhHHHHHHHcCCc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-------GGTSLTLFKNGWSVLDALGVG 116 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-------~g~~~~~~~~~~~~l~~~g~~ 116 (300)
.+++|||+|-.|...|..|.+.|++|+++|+++.... ..............|++.|+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 3689999999999999999999999999999875421 122222333345666666653
No 393
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.34 Score=42.40 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=35.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~ 95 (300)
..+||+|.|-|..=+..+..|+..|.+|+.+||++.-+.
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~ 41 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGG 41 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCc
Confidence 459999999999999999999999999999999997643
No 394
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.56 E-value=0.0041 Score=47.40 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=29.7
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 61 VvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
|+|+|+|..|+..|..|++.|.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999887
No 395
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.48 E-value=0.0049 Score=53.19 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
...+|+|||+|..|...|..|++.|++|+++.|..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 44689999999999999999999999999999865
No 396
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.45 E-value=0.018 Score=50.21 Aligned_cols=51 Identities=25% Similarity=0.423 Sum_probs=38.1
Q ss_pred CCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCCCChHhhhhc
Q 022277 170 PPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGIRSPIAKWI 220 (300)
Q Consensus 170 ~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~~s~~r~~~ 220 (300)
+.+.++-+++|..++..+++...+.+.. | ++++.|.||+|||-+-.+...+
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 4678889999999999887755565542 2 4789999999999775444334
No 397
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.44 E-value=0.0044 Score=52.67 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=32.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
.+|.|||+|..|...|..|++.|++|+++|+++..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 47999999999999999999999999999998754
No 398
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.42 E-value=0.004 Score=53.58 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 3699999999999999999999999999999864
No 399
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.023 Score=45.57 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
...-.+|||||=+.+.=|.+|.+.+-+|.|+-|.+.+
T Consensus 156 rnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f 192 (322)
T KOG0404|consen 156 RNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF 192 (322)
T ss_pred cCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh
Confidence 3467889999999999999999999999999998865
No 400
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0043 Score=51.65 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-------CcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLG-------IGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G-------~~V~viE~~~~~ 93 (300)
+..+|+|||+|.+||++|..+.+.+ ++|+|++-...+
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e 45 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE 45 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence 4579999999999999999888854 578888876654
No 401
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.38 E-value=0.0043 Score=56.57 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=31.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
+|+|||.|.+|+++|..|.++|++|+++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999988654
No 402
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.35 E-value=0.0058 Score=52.61 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
...|.|||+|..|...|..++..|++|+++|..+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998864
No 403
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.0062 Score=52.93 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.+|.|||.|.+||.+|..|++.|++|+.+|....
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3789999999999999999999999999998864
No 404
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.17 E-value=0.0073 Score=45.12 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999999 799999775
No 405
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.17 E-value=0.0079 Score=51.36 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 45799999999999999999999999999998764
No 406
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.17 E-value=0.0085 Score=51.48 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
.+|+|||+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999964
No 407
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.16 E-value=0.0082 Score=51.13 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998764
No 408
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.14 E-value=0.0073 Score=51.46 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 3699999999999999999999999999998864
No 409
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.08 E-value=0.1 Score=47.84 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRL 80 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~ 80 (300)
...+|+|||+|..|+.+|..|.+.
T Consensus 165 ~gk~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 165 SSDTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC
Confidence 346899999999999999999886
No 410
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.06 E-value=0.011 Score=47.38 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 46899999999999999999999999 699999873
No 411
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.00 E-value=0.013 Score=45.70 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.+..|+|+|+|.+|..+|..|...|.+|+++|....
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~ 54 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE 54 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence 468999999999999999999999999999998763
No 412
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.99 E-value=0.011 Score=53.69 Aligned_cols=35 Identities=31% Similarity=0.674 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
...+|+|||+|.+|+++|..|++.|++|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35789999999999999999999999999999975
No 413
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.98 E-value=0.014 Score=44.87 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=29.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEe
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIE 88 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE 88 (300)
...+|+|||||-+|..-+..|.+.|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45789999999999999999999999999995
No 414
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.94 E-value=0.0099 Score=47.58 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=30.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
...+|+|||+|.++..+|..|++.|.+|+++-|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 45899999999999999999999999999999876
No 415
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.94 E-value=0.011 Score=50.43 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998874
No 416
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.94 E-value=0.015 Score=46.74 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
...+|+|||||.+|...+..|.+.|.+|+|+....
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34699999999999999999999999999998754
No 417
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.93 E-value=0.014 Score=48.85 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~ 92 (300)
....|+|||+|-.|..+|..|++.|+ +++|+|.+.-
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 46899999999999999999999996 8999997753
No 418
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.90 E-value=0.065 Score=48.40 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=32.6
Q ss_pred CCeEEeCCeEEEEEEcCCceEEEEEc-CCcEEE--cCEEEEcCCCChH
Q 022277 171 PESVQFSSELAKIETSGNGVTILELV-NGTRIY--ANIVIGCDGIRSP 215 (300)
Q Consensus 171 g~~i~~~~~v~~i~~~~~~~~~v~~~-~g~~~~--ad~vV~A~G~~s~ 215 (300)
|++++.+++|+++..++.. +.+... +++.+. +|.||+|+|....
T Consensus 58 gv~~~~~~~V~~id~~~~~-v~~~~~~~~~~~~~~yd~lIiATG~~p~ 104 (427)
T TIGR03385 58 GIDVKTNHEVIEVNDERQT-VVVRNNKTNETYEESYDYLILSPGASPI 104 (427)
T ss_pred CCeEEecCEEEEEECCCCE-EEEEECCCCCEEecCCCEEEECCCCCCC
Confidence 8899899999999876655 324333 245677 9999999998553
No 419
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.89 E-value=0.012 Score=49.90 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
.+|.|||+|..|...|..|++.|++|+++|.++..
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~ 38 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAA 38 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHH
Confidence 47999999999999999999999999999987643
No 420
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.82 E-value=0.024 Score=50.47 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
....|+|+|+|+.|+.+|..+...|.+|+++|.++.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 457899999999999999999999999999998764
No 421
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.82 E-value=0.0084 Score=42.48 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
...+|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 46799999999999999999999999999998774
No 422
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.80 E-value=0.014 Score=50.12 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~ 89 (300)
+|+|||+|..|...|..|++.|.+|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 689999999999999999999999999998
No 423
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.79 E-value=0.024 Score=42.37 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~ 91 (300)
...+++|||+|-+|-++++.|.+.|.+ |+|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 468999999999999999999999997 99999875
No 424
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.79 E-value=0.014 Score=50.07 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
+|+|||+|..|...|..|++.|.+|++++|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 58999999999999999999999999999854
No 425
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.78 E-value=0.018 Score=46.21 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~ 90 (300)
....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999999999999999999864
No 426
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.78 E-value=0.013 Score=52.63 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.+|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999998764
No 427
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.75 E-value=0.12 Score=50.78 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=27.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHH---cCCcEEEEecCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQR---LGIGSLVIEQADS 92 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~---~G~~V~viE~~~~ 92 (300)
..+|+|||||.+|+-+|....+ .+.++++.+..+.
T Consensus 550 Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~ 587 (1028)
T PRK06567 550 RMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEK 587 (1028)
T ss_pred CCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhh
Confidence 3689999999999999986654 4677777776543
No 428
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.71 E-value=0.017 Score=41.72 Aligned_cols=32 Identities=34% Similarity=0.519 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 61 VvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
|+|||.|..|..++..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 78999999999999999998889999999874
No 429
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.71 E-value=0.017 Score=50.54 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
.+|.|||+|..|...|..|++.|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 469999999999999999999999999999853
No 430
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.57 E-value=0.019 Score=50.68 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
...+|+|||+|.+|+.+|..|.+.|.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 35679999999999999999999999999999875
No 431
>PRK04148 hypothetical protein; Provisional
Probab=95.53 E-value=0.015 Score=43.02 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
..++++||.| .|...|..|++.|.+|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 4679999999 999999999999999999998875
No 432
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.51 E-value=0.021 Score=48.79 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5699999999999999999999999999998764
No 433
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.48 E-value=0.026 Score=48.47 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~ 92 (300)
.+|.|||+|..|..+|+.|+..|+ +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 479999999999999999999887 8999998654
No 434
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.42 E-value=0.021 Score=52.23 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
...+|+|+|+|++|+.++..+...|.+|+++|.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467999999999999999999999999999998874
No 435
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.40 E-value=0.026 Score=48.67 Aligned_cols=34 Identities=26% Similarity=0.550 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.+|.|||+|..|...|..|++.|++|+++|++..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 5799999999999999999999999999998763
No 436
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.39 E-value=0.035 Score=48.61 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=79.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHH--HhccccccceEEE
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQR--LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL--RSQFLEIKGMAVK 132 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~--~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~~ 132 (300)
.+...+|||||.+..+++..... .+.+|.+|-..+.... .+ | -+..++ ...-......++.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPY-mR-----P---------PLSKELW~~~dpn~~k~lrfk 241 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPY-MR-----P---------PLSKELWWYGDPNSAKKLRFK 241 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcc-cC-----C---------CcchhceecCCCChhhheeec
Confidence 45778999999987777665544 3677888766654321 00 0 000000 0011122234444
Q ss_pred cCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277 133 SEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI 212 (300)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~ 212 (300)
.++|.....+-. .....+++.+|-+.. ..|+-+..+.+|..+..++.. |.++||.+|.+|..++|||.
T Consensus 242 qwsGkeRsiffe------pd~FfvspeDLp~~~---nGGvAvl~G~kvvkid~~d~~---V~LnDG~~I~YdkcLIATG~ 309 (659)
T KOG1346|consen 242 QWSGKERSIFFE------PDGFFVSPEDLPKAV---NGGVAVLRGRKVVKIDEEDKK---VILNDGTTIGYDKCLIATGV 309 (659)
T ss_pred ccCCccceeEec------CCcceeChhHCcccc---cCceEEEeccceEEeecccCe---EEecCCcEeehhheeeecCc
Confidence 444443322211 112234444443321 136789999999999888766 88999999999999999998
Q ss_pred ChHhhhhc
Q 022277 213 RSPIAKWI 220 (300)
Q Consensus 213 ~s~~r~~~ 220 (300)
.......+
T Consensus 310 ~Pk~l~~~ 317 (659)
T KOG1346|consen 310 RPKKLQVF 317 (659)
T ss_pred Ccccchhh
Confidence 76544444
No 437
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.37 E-value=0.027 Score=49.06 Aligned_cols=35 Identities=37% Similarity=0.561 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45789999999999999999999998 899999875
No 438
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.29 E-value=0.035 Score=43.11 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=31.8
Q ss_pred CCCCcEEEECCCH-HHHHHHHHHHHcCCcEEEEecCC
Q 022277 56 VRKEDIVIVGAGI-AGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 56 ~~~~dVvIIGgG~-aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
-...+|+|||+|- +|..+|..|.+.|.+|+++.|..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 3568999999996 69999999999999999999863
No 439
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.29 E-value=0.031 Score=48.71 Aligned_cols=35 Identities=31% Similarity=0.572 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 46799999999999999999999999 899999864
No 440
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.29 E-value=0.028 Score=48.33 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS 92 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~ 92 (300)
+|.|||+|.+|.++|+.|+..|+ +|.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999995 7999998764
No 441
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.28 E-value=0.022 Score=51.22 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
+|.|||.|..|+.+|..|++.|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999998764
No 442
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.28 E-value=0.034 Score=44.65 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 46899999999999999999999998 899999875
No 443
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.28 E-value=0.034 Score=45.00 Aligned_cols=35 Identities=31% Similarity=0.428 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 46799999999999999999999999 599999874
No 444
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.25 E-value=0.033 Score=46.02 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 35799999999999999999999998 799999775
No 445
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.23 E-value=0.027 Score=51.87 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
...+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 346799999999999999999999999999999875
No 446
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.22 E-value=0.037 Score=43.29 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
+|+|||+|-.|...|..|++.|+ +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999999 599999875
No 447
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.19 E-value=0.038 Score=41.69 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
+|+|||+|-.|..+|..|.+.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999999 799999775
No 448
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.15 E-value=0.037 Score=48.12 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.+|.|||+|..|...|..|++.|++|++++|...
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999999653
No 449
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.15 E-value=0.026 Score=42.11 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 61 VvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
++|+|+|..+.+++..++..|++|+|+|.++..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~ 33 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER 33 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc
Confidence 589999999999999999999999999998753
No 450
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.12 E-value=0.022 Score=47.84 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
.+.+|+|||||.+|..+|..+.-.|.+|+|+|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 35799999999999999999999999999999985
No 451
>PRK08328 hypothetical protein; Provisional
Probab=95.11 E-value=0.038 Score=45.40 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45789999999999999999999998 799998665
No 452
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.10 E-value=0.038 Score=45.83 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45899999999999999999999998 799999765
No 453
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.05 E-value=0.035 Score=48.19 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
+|.|||+|..|.+.|..|++.|.+|+++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999865
No 454
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.02 E-value=0.047 Score=47.09 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=32.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS 92 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~ 92 (300)
....+|+|||+|-+|.++|+.|...|+ ++.++|.+..
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 345799999999999999999999998 7999998654
No 455
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.01 E-value=0.063 Score=47.75 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
....|+|||.|..|..+|..|...|.+|+++|.++.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 457999999999999999999999999999998764
No 456
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.01 E-value=0.042 Score=45.08 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 46799999999999999999999999 799998765
No 457
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.93 E-value=0.037 Score=47.96 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
+|.|||+|..|...|..|++.|++|+++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999875
No 458
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.91 E-value=0.034 Score=51.17 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..+|.|||+|..|...|..|++.|++|+++|+++..
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 457999999999999999999999999999998653
No 459
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.90 E-value=0.04 Score=50.72 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998764
No 460
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.89 E-value=0.059 Score=40.57 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=30.0
Q ss_pred cEEEECC-CHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277 60 DIVIVGA-GIAGLATAVSLQRLGI--GSLVIEQADS 92 (300)
Q Consensus 60 dVvIIGg-G~aGl~~A~~L~~~G~--~V~viE~~~~ 92 (300)
+|.|||+ |..|..+|+.|...++ ++.++|....
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 7999999 9999999999999876 6999998863
No 461
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.81 E-value=0.051 Score=43.48 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35899999999999999999999999 599999775
No 462
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.80 E-value=0.054 Score=46.65 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
..+|.|||+|..|..+|..|.+.|++|++++|...
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35799999999999999999999999999998764
No 463
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.80 E-value=0.055 Score=43.28 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|..|..+|..|++.|+ +++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 46899999999999999999999999 699999765
No 464
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.79 E-value=0.053 Score=44.37 Aligned_cols=35 Identities=37% Similarity=0.482 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc---EEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIG---SLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~---V~viE~~~ 91 (300)
...+|+|+|+|-+|..+|..|.+.|.+ +.|++|..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 457899999999999999999999985 99999985
No 465
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.78 E-value=0.088 Score=44.71 Aligned_cols=35 Identities=34% Similarity=0.439 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|-+|-++|+.|.+.|. +|+|++|..
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 34689999999999999999999998 799999875
No 466
>PRK08223 hypothetical protein; Validated
Probab=94.72 E-value=0.057 Score=45.55 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 46899999999999999999999999 799999765
No 467
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.71 E-value=0.09 Score=40.24 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=29.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
....++|+|=|..|-.+|..|+..|.+|+|.|.++
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 45789999999999999999999999999999987
No 468
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.70 E-value=0.039 Score=46.75 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
+|.|||.|..|.+.|..|.+.|++|+++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~ 34 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES 34 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 589999999999999999999999999998753
No 469
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.68 E-value=0.058 Score=44.21 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
....|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35799999999999999999999999 899999765
No 470
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.68 E-value=0.045 Score=49.85 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~ 92 (300)
.+|.|||.|..|+.+|..|++.| ++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 46999999999999999999984 78999998764
No 471
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.64 E-value=0.054 Score=47.67 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQAD 91 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~ 91 (300)
.+|+|||+|-+|..+|..|++.| .+|+|.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 58999999999999999999999 8999999985
No 472
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.62 E-value=0.06 Score=46.31 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~ 92 (300)
.+|+|||+|..|..+|+.++..|+ +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 589999999999999999999876 9999999664
No 473
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.61 E-value=0.11 Score=46.60 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
....|+|+|.|..|..+|..|...|.+|+++|+++.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 457899999999999999999999999999998764
No 474
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.61 E-value=0.061 Score=44.16 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
+|+|||+|-.|..++..|++.|+ +++|+|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 799999775
No 475
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.61 E-value=0.059 Score=44.44 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-----------CcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLG-----------IGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G-----------~~V~viE~~~ 91 (300)
...+|+|||+|-.|..++..|++.| .+++|+|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 6789999999999999999999974 3889999765
No 476
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.60 E-value=0.046 Score=47.96 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~ 92 (300)
.|+|+|+|+.||.++..+...|. +|+++|+++.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 69999999999999888888886 6777787764
No 477
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.58 E-value=0.05 Score=48.34 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
+|.|||.|..|+.+|..++. |++|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 58999999999999988885 999999999874
No 478
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.56 E-value=0.074 Score=45.99 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL 93 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~ 93 (300)
..+|+|||+|..|..+|+.++..|+ ++.++|.++..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 4689999999999999999999997 99999988764
No 479
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.53 E-value=0.067 Score=41.36 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
.+|.|||-|-.|...|..|.+.|++|.++|+.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 5799999999999999999999999999998863
No 480
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.52 E-value=0.043 Score=52.83 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
.+|.|||+|..|...|..++..|++|+++|.+...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKA 348 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 57999999999999999999999999999998643
No 481
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.49 E-value=0.062 Score=45.93 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
...+|+|||.|.+|..++..|.+.|.+|+++++.+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 357999999999999999999999999999998853
No 482
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.46 E-value=0.057 Score=49.40 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
...+|+|+|+|.+|+.++..+...|.+|+++|++..
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357999999999999999999999999999998864
No 483
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.41 E-value=0.13 Score=41.23 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~ 91 (300)
....|+|+|.|-.|..+|..|.+.|.+|+++|++.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 44689999999999999999999999999998764
No 484
>PLN02494 adenosylhomocysteinase
Probab=94.37 E-value=0.11 Score=46.99 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
....|+|+|.|.+|..+|..+...|.+|+++|+++.
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 457999999999999999999999999999998874
No 485
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.37 E-value=0.056 Score=46.43 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
+|.|+|+|..|...|+.|++.|.+|+++-|.+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 689999999999999999999988888888774
No 486
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.37 E-value=0.075 Score=44.06 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
...+++|+|||..+..+|..++..|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 568999999999999999999999999999997765
No 487
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.085 Score=45.56 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=35.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~ 95 (300)
..+||+|.|-|+.-+..+..|+..|.+|+.||+++.-+.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence 369999999999999999999999999999999997654
No 488
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=94.33 E-value=0.066 Score=51.55 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..+|.|||||..|...|..++..|++|+++|.+...
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS 348 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 357999999999999999999999999999988643
No 489
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.29 E-value=0.083 Score=45.48 Aligned_cols=35 Identities=23% Similarity=0.576 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS 92 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~ 92 (300)
..+|.|||+|-+|.++|+.|...|+ ++.|+|.+..
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 4689999999999999999999887 6999998764
No 490
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.26 E-value=0.075 Score=45.05 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
+|+|||+|-.|..++..|++.|+ +++|+|.+.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 58999999999999999999998 799999765
No 491
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.26 E-value=0.15 Score=38.81 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADS 92 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~ 92 (300)
...+++|||+|..|.+.|..|.+.| .+|++++++..
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~ 54 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE 54 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 4578999999999999999999996 78999998753
No 492
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=0.07 Score=46.64 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=41.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEc
Q 022277 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLF 103 (300)
Q Consensus 56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~ 103 (300)
+..+||||||-|..-..+|...++.|.+|+-+|+++..+....++++.
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 367999999999999999999999999999999999876555555544
No 493
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.25 E-value=0.055 Score=43.41 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
....|.|||||..|.-.|...+..|++|.++|++...
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA 46 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence 5678999999999999999999999999999998753
No 494
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.20 E-value=0.072 Score=45.66 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD 91 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~ 91 (300)
+|+|||+|-.|+.+|..|+..|+ +++|+|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 58999999999999999999998 799999775
No 495
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.15 E-value=0.069 Score=45.80 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277 61 IVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS 92 (300)
Q Consensus 61 VvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~ 92 (300)
|.|||+|..|..+|+.|+..|+ +|+++|.+..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 5799999999999999999887 9999999864
No 496
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.14 E-value=0.079 Score=45.56 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS 92 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~ 92 (300)
+|+|||+|-+|.++|+.|...|+ ++.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 68999999999999999999995 7999999764
No 497
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.12 E-value=0.17 Score=43.12 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC
Q 022277 57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD 91 (300)
Q Consensus 57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~ 91 (300)
....++|+|||-+|.++|+.|++.|.+ |+|+.|+.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 346799999999999999999999996 99999875
No 498
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=94.08 E-value=0.069 Score=51.55 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277 59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93 (300)
Q Consensus 59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~ 93 (300)
..|.|||||..|...|..++..|++|+++|.++..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~ 370 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAG 370 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHH
Confidence 57999999999999999999999999999988743
No 499
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.05 E-value=0.074 Score=45.75 Aligned_cols=35 Identities=20% Similarity=0.488 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277 58 KEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS 92 (300)
Q Consensus 58 ~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~ 92 (300)
..+|.|||+|..|.+.|..|.+.|. +|+++++++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~ 42 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAE 42 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 3579999999999999999999995 8999998753
No 500
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.02 E-value=0.073 Score=48.46 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92 (300)
Q Consensus 60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~ 92 (300)
+|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999999754
Done!