BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022278
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P75713|YLBA_ECOLI Uncharacterized protein YlbA OS=Escherichia coli (strain K12)
GN=ylbA PE=1 SV=1
Length = 261
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 10/244 (4%)
Query: 63 TRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPP 121
R++ K + AL+TP+ V + +P + N L TP +G+ FV YL + +N +
Sbjct: 17 NRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGF 76
Query: 122 HD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL---RAEGSATLVVFER 176
+E F++V+ G+ + A G + L Y Y PP + +AE S + +++R
Sbjct: 77 GGEGIETFLYVISGN-ITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDS-QIFLYKR 134
Query: 177 RYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV 235
RY +E + + G+ + + G + L LP+ + FD N+HI+ F PG
Sbjct: 135 RYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGY 194
Query: 236 KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT-RYLLYKD 294
E H +HG +L GQG+Y L ++W PV+ GD ++M + Q +G+ Y+ KD
Sbjct: 195 IETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKD 254
Query: 295 VNRN 298
NR+
Sbjct: 255 CNRD 258
>sp|B1XT48|PRMA_POLNS Ribosomal protein L11 methyltransferase OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1) GN=prmA
PE=3 SV=1
Length = 328
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 179 ASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHI-----MDFQPGDFL 233
+L + + G D+ PL E PG +++ AV FN I +F P
Sbjct: 26 GALSVTVEDDAAGGYDENPLYEEPGLSPEVQAWDRSAVTALFNPEIDTSGSAEFIPELLA 85
Query: 234 NVKEVHYN----QHGLLLLEGQGIYRLGDSWY-PVQAGDVLWMAPFVPQWYAA 281
++KEV +N Q +E Q RL S + P+Q G+ +W+ VP W+ A
Sbjct: 86 SLKEVGFNLAPPQEK--TIEEQDWVRLTQSQFSPIQIGERIWV---VPSWHDA 133
>sp|P28809|MMSR_PSEAE MmsAB operon regulatory protein OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mmsR
PE=4 SV=2
Length = 307
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 231 DFLNVKEVHYNQHGLLLL-EGQGIYRL--GDSW--YPVQAGDVLWMAPFVPQWYAA 281
D +E H ++H L+ EGQG+ R+ G++W Y V +GD+LW+ P + YAA
Sbjct: 58 DHRMSRERH-DEHLLIYCSEGQGLLRVREGEAWREYRVGSGDLLWLPPGMAHDYAA 112
>sp|Q8D8M2|FTSK_VIBVU DNA translocase FtsK OS=Vibrio vulnificus (strain CMCP6) GN=ftsK
PE=3 SV=2
Length = 985
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 22/135 (16%)
Query: 134 SAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS------ATLVVFERRYASLENHITE 187
S + + G S L + YLPP +H++R G+ VV + N+I E
Sbjct: 838 SRTILDQGGAESLLGMGDMLYLPPGSSHTIRVHGAFASDDDVHAVVNNWKARGKPNYIDE 897
Query: 188 QIVGSTDKQPLLETPGEVFQ----LRKLLPQAVPFDFNIHIMDFQPGDFLNVK---EVHY 240
I G + LL PGE + L L Q V H++ + G V+ ++ Y
Sbjct: 898 IISGEQGPESLL--PGEQMESDEDLDPLFDQVVE-----HVVQSRRGSVSGVQRRFKIGY 950
Query: 241 NQHGLLL--LEGQGI 253
N+ ++ LE QGI
Sbjct: 951 NRAARIVEQLEAQGI 965
>sp|C3KDW8|PURA_PSEFS Adenylosuccinate synthetase OS=Pseudomonas fluorescens (strain
SBW25) GN=purA PE=3 SV=1
Length = 429
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 17 VTIGATDG-GFCSAPSILDRETSSKPMYWKV---TNPTLSPSHLQDLPGFTRSVYKRDHA 72
+ +G D G AP+ D +P+Y +V T T+ L++LP R+ KR A
Sbjct: 344 ICVGYKDADGNDVAPTDADSYVGLQPVYEEVPGWTESTVGAKTLEELPANARAYIKRVEA 403
Query: 73 LITPESHVLSPLPEWTNTL 91
LI ++S P+ T+
Sbjct: 404 LIGAPIDIISTGPDRNETI 422
>sp|Q87QP4|FTSK_VIBPA DNA translocase FtsK OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=ftsK PE=3 SV=1
Length = 1028
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 25/146 (17%)
Query: 126 RFIFVVQ---GSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS------ATLVVFER 176
R F V S + + G S L + YLPP +H++R G+ VV
Sbjct: 870 RVAFTVSTKTDSRTILDQGGAESLLGMGDMLYLPPGSSHTIRVHGAFASDDDVHAVVNNW 929
Query: 177 RYASLENHITEQIVGSTDKQPLLETPGEVF----QLRKLLPQAVPFDFNIHIMDFQPGDF 232
+ N+I E I G + LL PGE ++ L Q V H++ + G
Sbjct: 930 KARGKPNYIDEIISGDQGPESLL--PGEQMESDEEMDPLFDQVVE-----HVVQSRRGSV 982
Query: 233 LNVK---EVHYNQHGLLL--LEGQGI 253
V+ ++ YN+ ++ LE QGI
Sbjct: 983 SGVQRRFKIGYNRAARIVEQLEAQGI 1008
>sp|A6Q718|RF2_SULNB Peptide chain release factor 2 OS=Sulfurovum sp. (strain NBC37-1)
GN=prfB PE=3 SV=1
Length = 364
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 209 RKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHY-----NQHGLLLLEGQGIYRL 256
R L A F + ++D+QPG+ +K+V + N +G L +E GI+RL
Sbjct: 149 RMYLRWAERHGFKVEVLDYQPGEEAGIKDVSFIIKGENAYGYLKVEN-GIHRL 200
>sp|Q84I33|FTSK_VIBCH DNA translocase FtsK OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=ftsK PE=3 SV=2
Length = 960
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 22/135 (16%)
Query: 134 SAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS------ATLVVFERRYASLENHITE 187
S + + SG S L + YLP +H++R G+ VV + N+I+E
Sbjct: 813 SRTILDQSGAESLLGMGDMLYLPAGSSHTIRVHGAFASDDDVHAVVNNWKARGKPNYISE 872
Query: 188 QIVGSTDKQPLLETPGEVF----QLRKLLPQAVPFDFNIHIMDFQPGDFLNVK---EVHY 240
I G + LL PGE +L L Q V H+++ + G V+ ++ Y
Sbjct: 873 IIQGDHGPEALL--PGEQSESDEELDPLFDQVVE-----HVVETRRGSVSGVQRRFKIGY 925
Query: 241 NQHGLLL--LEGQGI 253
N+ ++ LE QGI
Sbjct: 926 NRAARIVEQLEAQGI 940
>sp|Q9JLN9|MTOR_MOUSE Serine/threonine-protein kinase mTOR OS=Mus musculus GN=Mtor PE=1
SV=2
Length = 2549
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 59 LPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAY----LITPAMGSHFVMYLANMQEN 114
L F S + L +HVLS + + A+ L++ A+ S F +YL + +
Sbjct: 399 LAAFRPSAFTDTQYLQDTMNHVLSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDI 458
Query: 115 ARSALPPHD--------VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE 166
R+ALPP D V+ V +ML A G + D L P A L
Sbjct: 459 IRAALPPKDFAHKRQKTVQVDATVFTCISMLARAMG--PGIQQDIKELLEPMLAVGLSPA 516
Query: 167 GSATLVVFERRYASLENHITEQIV 190
+A L R+ L+ I + ++
Sbjct: 517 LTAVLYDLSRQIPQLKKDIQDGLL 540
>sp|Q9M156|U72B1_ARATH UDP-glycosyltransferase 72B1 OS=Arabidopsis thaliana GN=UGT72B1
PE=1 SV=1
Length = 480
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 125 ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG 167
+RF++V++ + + N+S S D T+LPP F + G
Sbjct: 298 QRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRG 340
>sp|P42346|MTOR_RAT Serine/threonine-protein kinase mTOR OS=Rattus norvegicus GN=Mtor
PE=1 SV=1
Length = 2549
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 59 LPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAY----LITPAMGSHFVMYLANMQEN 114
L F S + L +HVLS + + A+ L++ A+ S F +YL + +
Sbjct: 399 LAAFRPSAFTDTQYLQDTMNHVLSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDI 458
Query: 115 ARSALPPHD--------VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE 166
R+ALPP D V+ V +ML A G + D L P A L
Sbjct: 459 IRAALPPKDFAHKRQKTVQVDATVFTCISMLARAMG--PGIQQDIKELLEPMLAVGLSPA 516
Query: 167 GSATLVVFERRYASLENHITEQIV 190
+A L R+ L+ I + ++
Sbjct: 517 LTAVLYDLSRQIPQLKKDIQDGLL 540
>sp|P42345|MTOR_HUMAN Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1
SV=1
Length = 2549
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 18/146 (12%)
Query: 59 LPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAY----LITPAMGSHFVMYLANMQEN 114
L F S + L +HVLS + + A+ L++ A+ S F +YL + +
Sbjct: 399 LAAFRPSAFTDTQYLQDTMNHVLSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDI 458
Query: 115 ARSALPPHD----------VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR 164
R+ALPP D V+ +F +ML A G + D L P A L
Sbjct: 459 IRAALPPKDFAHKRQKAMQVDATVFTC--ISMLARAMG--PGIQQDIKELLEPMLAVGLS 514
Query: 165 AEGSATLVVFERRYASLENHITEQIV 190
+A L R+ L+ I + ++
Sbjct: 515 PALTAVLYDLSRQIPQLKKDIQDGLL 540
>sp|B0JIT3|FABZ_MICAN 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
OS=Microcystis aeruginosa (strain NIES-843) GN=fabZ PE=3
SV=1
Length = 159
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 193 TDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPG-DFLNVKEVHYNQ 242
T+ +P+++T V ++R+LLP PF I+D+ PG + +K V N+
Sbjct: 9 TELEPVIKTTFTVEEIRQLLPHRYPFALVDRIIDYVPGQKAVGLKNVTINE 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,521,499
Number of Sequences: 539616
Number of extensions: 4957858
Number of successful extensions: 9778
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9772
Number of HSP's gapped (non-prelim): 17
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)