Query 022278
Match_columns 300
No_of_seqs 299 out of 1090
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:23:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03214 ura-cupin putative a 100.0 8.4E-68 1.8E-72 488.0 30.8 243 57-300 9-259 (260)
2 COG3257 GlxB Uncharacterized p 100.0 4.1E-63 9E-68 433.9 23.2 243 56-299 10-261 (264)
3 PRK11171 hypothetical protein; 100.0 5.7E-59 1.2E-63 430.6 31.5 243 57-300 14-264 (266)
4 TIGR03404 bicupin_oxalic bicup 99.9 9.2E-24 2E-28 203.6 24.5 188 103-293 66-323 (367)
5 PRK09943 DNA-binding transcrip 99.9 1.3E-23 2.8E-28 184.4 10.7 146 27-176 21-181 (185)
6 PRK13290 ectC L-ectoine syntha 99.7 2.6E-16 5.6E-21 130.4 11.5 101 188-292 1-106 (125)
7 PRK13290 ectC L-ectoine syntha 99.6 1.6E-14 3.5E-19 119.6 12.6 85 90-176 22-108 (125)
8 PF07883 Cupin_2: Cupin domain 99.6 1.6E-14 3.4E-19 106.3 8.7 67 224-291 2-69 (71)
9 COG1917 Uncharacterized conser 99.5 5.3E-14 1.1E-18 116.5 11.8 89 205-294 27-117 (131)
10 PF07883 Cupin_2: Cupin domain 99.5 1.2E-13 2.6E-18 101.5 7.5 66 108-174 2-70 (71)
11 COG0662 {ManC} Mannose-6-phosp 99.4 8E-13 1.7E-17 109.5 10.8 78 217-294 33-110 (127)
12 TIGR03214 ura-cupin putative a 99.4 5.3E-12 1.2E-16 116.8 14.0 93 202-294 37-133 (260)
13 PRK11171 hypothetical protein; 99.4 6E-12 1.3E-16 116.8 13.6 94 201-294 41-136 (266)
14 TIGR02272 gentisate_1_2 gentis 99.4 4.7E-11 1E-15 113.9 18.1 201 90-294 61-321 (335)
15 PRK09943 DNA-binding transcrip 99.3 1.8E-11 4E-16 107.3 12.1 87 206-292 93-179 (185)
16 COG1917 Uncharacterized conser 99.3 2.3E-11 4.9E-16 100.8 11.7 82 95-177 34-118 (131)
17 PRK15460 cpsB mannose-1-phosph 99.3 1.8E-11 3.9E-16 122.1 11.6 77 99-176 380-459 (478)
18 TIGR01479 GMP_PMI mannose-1-ph 99.3 1.7E-11 3.6E-16 122.2 10.8 76 217-292 373-448 (468)
19 PRK15460 cpsB mannose-1-phosph 99.3 2E-11 4.4E-16 121.7 11.0 76 217-292 382-457 (478)
20 smart00835 Cupin_1 Cupin. This 99.3 5.3E-11 1.1E-15 100.6 11.8 78 218-296 28-112 (146)
21 COG3837 Uncharacterized conser 99.2 4.1E-11 8.9E-16 101.5 8.6 82 96-178 33-121 (161)
22 TIGR01479 GMP_PMI mannose-1-ph 99.2 7E-11 1.5E-15 117.8 11.6 76 99-175 371-449 (468)
23 PF14499 DUF4437: Domain of un 99.2 3.6E-10 7.8E-15 103.7 15.1 196 89-291 21-242 (251)
24 COG0662 {ManC} Mannose-6-phosp 99.2 1.6E-10 3.6E-15 95.7 11.1 74 100-174 32-108 (127)
25 PF01050 MannoseP_isomer: Mann 99.2 1E-10 2.2E-15 100.0 9.9 75 217-291 60-134 (151)
26 PRK04190 glucose-6-phosphate i 99.2 2.4E-10 5.3E-15 101.2 11.9 82 211-292 59-153 (191)
27 smart00835 Cupin_1 Cupin. This 99.1 7.4E-10 1.6E-14 93.6 10.7 75 101-176 27-110 (146)
28 COG4101 Predicted mannose-6-ph 99.1 5.9E-10 1.3E-14 90.4 8.5 76 216-291 42-120 (142)
29 COG3837 Uncharacterized conser 99.0 9.1E-10 2E-14 93.4 9.0 81 218-298 40-123 (161)
30 PLN00212 glutelin; Provisional 99.0 8.1E-08 1.7E-12 96.0 22.1 74 219-294 347-427 (493)
31 COG4101 Predicted mannose-6-ph 99.0 2.7E-09 5.8E-14 86.6 9.1 82 99-183 40-128 (142)
32 TIGR03404 bicupin_oxalic bicup 98.9 7.2E-09 1.6E-13 100.4 11.7 86 92-177 231-325 (367)
33 PF02041 Auxin_BP: Auxin bindi 98.9 5.3E-09 1.2E-13 88.0 8.7 77 100-177 39-128 (167)
34 PF02041 Auxin_BP: Auxin bindi 98.8 2.3E-08 5E-13 84.2 10.0 103 187-291 9-124 (167)
35 PF00190 Cupin_1: Cupin; Inte 98.8 3.3E-08 7.2E-13 83.3 10.2 89 207-296 16-122 (144)
36 TIGR03037 anthran_nbaC 3-hydro 98.8 3E-08 6.4E-13 85.1 9.8 69 112-180 36-107 (159)
37 PF04962 KduI: KduI/IolB famil 98.7 7.5E-07 1.6E-11 82.7 17.1 167 102-274 25-225 (261)
38 PRK13264 3-hydroxyanthranilate 98.7 6.4E-08 1.4E-12 84.3 9.2 69 112-180 42-113 (177)
39 PF01050 MannoseP_isomer: Mann 98.7 1.7E-07 3.6E-12 80.2 10.6 73 101-174 60-135 (151)
40 COG3435 Gentisate 1,2-dioxygen 98.7 2.1E-07 4.6E-12 86.6 11.8 184 108-295 96-334 (351)
41 PRK15457 ethanolamine utilizat 98.7 2.8E-07 6E-12 83.3 12.0 85 205-292 142-226 (233)
42 PF02311 AraC_binding: AraC-li 98.7 9.2E-08 2E-12 77.0 7.8 62 229-291 12-73 (136)
43 PRK04190 glucose-6-phosphate i 98.7 4.1E-07 8.9E-12 80.7 12.4 76 99-175 63-154 (191)
44 PF12973 Cupin_7: ChrR Cupin-l 98.6 3.4E-07 7.4E-12 71.3 10.2 87 197-290 1-87 (91)
45 PLN00212 glutelin; Provisional 98.6 1.7E-07 3.6E-12 93.8 10.1 90 207-297 64-186 (493)
46 PF06339 Ectoine_synth: Ectoin 98.6 3.2E-07 6.9E-12 75.4 9.9 101 188-292 1-106 (126)
47 PRK15457 ethanolamine utilizat 98.6 3.7E-07 8.1E-12 82.5 11.3 78 95-175 148-225 (233)
48 PF11699 CENP-C_C: Mif2/CENP-C 98.6 4.1E-07 8.8E-12 70.5 9.5 71 103-174 11-84 (85)
49 COG2140 Thermophilic glucose-6 98.6 2E-07 4.4E-12 83.0 8.3 68 223-291 83-158 (209)
50 PF12973 Cupin_7: ChrR Cupin-l 98.6 3.7E-07 8E-12 71.1 8.5 79 90-173 10-88 (91)
51 PF05899 Cupin_3: Protein of u 98.5 5.1E-07 1.1E-11 68.0 7.0 64 102-167 5-68 (74)
52 PRK13501 transcriptional activ 98.3 1.6E-06 3.4E-11 80.7 8.3 72 220-292 18-89 (290)
53 PF06249 EutQ: Ethanolamine ut 98.3 3.1E-06 6.8E-11 72.3 8.4 79 95-177 68-147 (152)
54 PRK00924 5-keto-4-deoxyuronate 98.2 0.00016 3.4E-09 67.5 18.8 162 121-290 71-254 (276)
55 PF00190 Cupin_1: Cupin; Inte 98.2 8E-06 1.7E-10 68.7 9.4 78 102-179 32-122 (144)
56 PF02311 AraC_binding: AraC-li 98.2 4.5E-06 9.8E-11 67.0 7.5 58 118-176 17-76 (136)
57 PF06249 EutQ: Ethanolamine ut 98.2 8.4E-06 1.8E-10 69.7 9.1 86 204-292 61-146 (152)
58 TIGR02272 gentisate_1_2 gentis 98.2 4.4E-06 9.6E-11 80.0 7.2 76 219-295 80-156 (335)
59 COG2140 Thermophilic glucose-6 98.2 2.8E-05 6E-10 69.5 11.7 83 90-174 67-159 (209)
60 TIGR02451 anti_sig_ChrR anti-s 98.1 1.6E-05 3.5E-10 71.8 9.4 91 196-294 106-196 (215)
61 PRK13500 transcriptional activ 98.1 1.6E-05 3.6E-10 75.0 8.7 65 228-293 56-120 (312)
62 PF11699 CENP-C_C: Mif2/CENP-C 98.0 8.5E-05 1.8E-09 57.6 11.1 73 219-291 11-83 (85)
63 COG4766 EutQ Ethanolamine util 98.0 6.2E-05 1.3E-09 63.9 10.3 86 204-292 84-169 (176)
64 PRK10296 DNA-binding transcrip 98.0 3.2E-05 6.9E-10 71.3 9.5 61 222-282 24-84 (278)
65 COG3257 GlxB Uncharacterized p 98.0 4.1E-05 8.9E-10 68.6 9.4 78 218-295 59-137 (264)
66 PF03079 ARD: ARD/ARD' family; 98.0 4.7E-05 1E-09 65.6 9.0 55 236-290 87-146 (157)
67 PRK13503 transcriptional activ 98.0 1.1E-05 2.3E-10 74.1 5.3 63 229-292 24-86 (278)
68 PRK13502 transcriptional activ 97.9 3.3E-05 7.2E-10 71.3 8.4 65 226-291 24-88 (282)
69 COG3718 IolB Uncharacterized e 97.9 0.0018 3.9E-08 58.8 18.1 170 104-280 29-239 (270)
70 TIGR02451 anti_sig_ChrR anti-s 97.9 3.4E-05 7.3E-10 69.7 7.2 66 104-174 127-194 (215)
71 PF06052 3-HAO: 3-hydroxyanthr 97.9 8.4E-05 1.8E-09 63.0 8.9 67 111-177 40-109 (151)
72 PF06560 GPI: Glucose-6-phosph 97.9 0.00015 3.3E-09 63.8 10.6 73 220-292 50-143 (182)
73 COG4766 EutQ Ethanolamine util 97.8 0.00016 3.6E-09 61.4 9.4 79 95-176 91-169 (176)
74 PRK10371 DNA-binding transcrip 97.8 7.4E-05 1.6E-09 70.4 8.2 66 220-286 26-91 (302)
75 TIGR03037 anthran_nbaC 3-hydro 97.8 0.00011 2.4E-09 63.3 8.3 63 221-284 28-95 (159)
76 COG1482 ManA Phosphomannose is 97.8 0.00064 1.4E-08 64.5 14.1 129 143-282 158-302 (312)
77 KOG2757 Mannose-6-phosphate is 97.7 0.00061 1.3E-08 65.3 13.1 137 144-285 249-398 (411)
78 TIGR02297 HpaA 4-hydroxyphenyl 97.7 8.9E-05 1.9E-09 68.4 7.4 62 229-291 32-94 (287)
79 PRK13264 3-hydroxyanthranilate 97.7 0.00017 3.8E-09 63.0 8.2 54 228-282 42-99 (177)
80 COG3450 Predicted enzyme of th 97.7 0.00024 5.1E-09 58.2 8.0 66 103-170 44-109 (116)
81 COG3435 Gentisate 1,2-dioxygen 97.6 9E-05 2E-09 69.4 5.7 66 224-290 96-162 (351)
82 PF06339 Ectoine_synth: Ectoin 97.6 0.0013 2.7E-08 54.4 11.4 76 99-174 30-106 (126)
83 PRK15131 mannose-6-phosphate i 97.6 0.0032 6.9E-08 61.8 16.3 133 143-285 237-382 (389)
84 PRK13501 transcriptional activ 97.6 0.00028 6E-09 65.6 8.4 53 113-166 27-79 (290)
85 PRK10296 DNA-binding transcrip 97.6 0.00055 1.2E-08 63.1 10.3 56 116-172 35-91 (278)
86 TIGR00218 manA mannose-6-phosp 97.6 0.00049 1.1E-08 65.1 10.0 131 131-277 142-289 (302)
87 PF05899 Cupin_3: Protein of u 97.5 0.00066 1.4E-08 51.0 7.5 58 220-280 7-65 (74)
88 PRK13502 transcriptional activ 97.4 0.00066 1.4E-08 62.6 8.4 52 113-165 27-78 (282)
89 PRK13500 transcriptional activ 97.4 0.00055 1.2E-08 64.7 8.0 48 117-165 61-108 (312)
90 PF05726 Pirin_C: Pirin C-term 97.3 0.00091 2E-08 53.4 7.4 71 107-182 2-74 (104)
91 PLN02288 mannose-6-phosphate i 97.3 0.0021 4.5E-08 63.1 11.1 128 144-276 252-391 (394)
92 COG1791 Uncharacterized conser 97.3 0.00033 7.1E-09 60.6 4.3 50 236-285 90-144 (181)
93 PRK10371 DNA-binding transcrip 97.2 0.001 2.2E-08 62.7 7.7 52 113-165 35-86 (302)
94 PRK13503 transcriptional activ 97.2 0.00063 1.4E-08 62.4 5.7 50 116-166 27-76 (278)
95 PF14499 DUF4437: Domain of un 97.2 0.0016 3.5E-08 60.1 8.2 96 192-293 4-109 (251)
96 COG1741 Pirin-related protein 97.0 0.084 1.8E-06 49.6 18.3 175 109-292 49-240 (276)
97 COG4297 Uncharacterized protei 97.0 0.0011 2.3E-08 55.6 5.0 48 230-277 52-103 (163)
98 TIGR02297 HpaA 4-hydroxyphenyl 97.0 0.0019 4.2E-08 59.5 7.3 59 116-175 35-96 (287)
99 PF05962 HutD: HutD; InterPro 97.0 0.044 9.5E-07 48.3 15.1 171 75-289 2-181 (184)
100 PRK10572 DNA-binding transcrip 96.9 0.0027 5.8E-08 58.9 7.3 42 243-284 51-92 (290)
101 PF03079 ARD: ARD/ARD' family; 96.8 0.0019 4.1E-08 55.7 5.0 48 118-165 86-137 (157)
102 PF05523 FdtA: WxcM-like, C-te 96.8 0.0027 6E-08 52.9 5.8 70 111-180 40-116 (131)
103 PHA01976 helix-turn-helix prot 96.6 0.00015 3.2E-09 52.8 -2.8 42 27-68 16-62 (67)
104 TIGR03070 couple_hipB transcri 96.6 0.00028 6E-09 49.2 -1.4 36 28-63 17-57 (58)
105 PF12844 HTH_19: Helix-turn-he 96.6 0.0001 2.2E-09 53.1 -3.8 42 28-69 14-60 (64)
106 TIGR02684 dnstrm_HI1420 probab 96.6 0.00034 7.3E-09 54.7 -1.2 36 31-66 48-88 (89)
107 PRK13890 conjugal transfer pro 96.6 0.00019 4.2E-09 59.0 -2.9 43 27-69 19-66 (120)
108 COG1791 Uncharacterized conser 96.5 0.011 2.3E-07 51.4 7.5 68 119-187 90-161 (181)
109 KOG3995 3-hydroxyanthranilate 96.5 0.074 1.6E-06 47.8 12.8 170 112-283 41-269 (279)
110 TIGR00270 conserved hypothetic 96.4 0.00037 8E-09 59.9 -2.4 42 28-69 84-130 (154)
111 PF01381 HTH_3: Helix-turn-hel 96.3 0.00018 3.9E-09 50.2 -3.8 39 28-66 11-54 (55)
112 PRK08359 transcription factor; 96.3 0.00054 1.2E-08 60.0 -1.7 43 28-70 100-147 (176)
113 PRK10572 DNA-binding transcrip 96.3 0.021 4.5E-07 52.9 8.6 52 122-174 47-101 (290)
114 PF05523 FdtA: WxcM-like, C-te 96.2 0.021 4.5E-07 47.6 7.6 75 219-294 32-111 (131)
115 PRK06424 transcription factor; 96.1 0.00073 1.6E-08 57.4 -1.7 39 28-66 99-142 (144)
116 TIGR02612 mob_myst_A mobile my 96.1 0.00056 1.2E-08 58.5 -2.5 44 26-69 38-88 (150)
117 PRK08099 bifunctional DNA-bind 96.1 0.0011 2.3E-08 65.3 -1.2 39 25-63 2-46 (399)
118 COG3450 Predicted enzyme of th 96.0 0.068 1.5E-06 43.8 9.4 53 221-277 46-100 (116)
119 PF13560 HTH_31: Helix-turn-he 96.0 0.00042 9E-09 50.2 -3.4 39 28-66 16-60 (64)
120 PF05118 Asp_Arg_Hydrox: Aspar 95.9 0.037 8.1E-07 47.7 8.0 77 219-297 79-161 (163)
121 PF05726 Pirin_C: Pirin C-term 95.9 0.025 5.4E-07 45.1 6.2 66 224-292 3-68 (104)
122 PRK09726 antitoxin HipB; Provi 95.8 0.0012 2.5E-08 51.1 -1.7 43 27-69 26-73 (88)
123 PF02678 Pirin: Pirin; InterP 95.5 0.065 1.4E-06 43.3 7.4 61 230-290 39-103 (107)
124 PF12852 Cupin_6: Cupin 95.5 0.051 1.1E-06 47.2 7.1 42 243-284 37-80 (186)
125 KOG2107 Uncharacterized conser 95.4 0.028 6.1E-07 48.6 5.1 63 222-284 65-141 (179)
126 PF12852 Cupin_6: Cupin 95.4 0.034 7.4E-07 48.3 5.7 41 124-165 35-77 (186)
127 PF06560 GPI: Glucose-6-phosph 95.3 0.23 5E-06 43.9 10.7 50 123-172 82-141 (182)
128 PRK08154 anaerobic benzoate ca 95.3 0.002 4.2E-08 61.1 -2.5 42 28-69 43-89 (309)
129 PF05995 CDO_I: Cysteine dioxy 95.2 0.13 2.7E-06 45.0 8.5 77 102-178 73-166 (175)
130 KOG2757 Mannose-6-phosphate is 95.1 0.12 2.7E-06 49.9 8.9 65 102-167 331-396 (411)
131 PRK09685 DNA-binding transcrip 95.1 0.066 1.4E-06 49.7 7.0 44 243-286 73-116 (302)
132 PRK09706 transcriptional repre 95.0 0.0022 4.7E-08 53.4 -2.8 42 28-69 20-66 (135)
133 COG1482 ManA Phosphomannose is 95.0 0.19 4E-06 48.0 9.8 65 99-166 237-302 (312)
134 PF04962 KduI: KduI/IolB famil 94.9 0.18 4E-06 46.9 9.3 79 211-292 17-105 (261)
135 PF04209 HgmA: homogentisate 1 94.8 0.34 7.3E-06 48.1 11.4 54 121-175 143-196 (424)
136 COG4297 Uncharacterized protei 94.7 0.089 1.9E-06 44.3 6.0 65 114-180 52-120 (163)
137 PRK10579 hypothetical protein; 94.3 0.25 5.3E-06 39.0 7.3 60 111-173 30-91 (94)
138 COG3717 KduI 5-keto 4-deoxyuro 94.3 0.44 9.5E-06 43.6 9.9 112 123-240 74-199 (278)
139 PLN02288 mannose-6-phosphate i 94.3 0.12 2.6E-06 50.9 6.8 58 102-160 332-391 (394)
140 PF06865 DUF1255: Protein of u 94.2 0.31 6.7E-06 38.5 7.6 62 109-173 28-91 (94)
141 smart00530 HTH_XRE Helix-turn- 94.0 0.0067 1.5E-07 40.0 -1.8 40 27-66 11-55 (56)
142 PRK09685 DNA-binding transcrip 94.0 0.17 3.7E-06 46.9 7.0 41 124-165 71-111 (302)
143 TIGR02607 antidote_HigA addict 94.0 0.0056 1.2E-07 45.6 -2.4 43 27-69 19-66 (78)
144 PF05118 Asp_Arg_Hydrox: Aspar 93.1 0.53 1.2E-05 40.5 8.1 77 103-180 79-162 (163)
145 PRK15131 mannose-6-phosphate i 93.0 0.67 1.4E-05 45.6 9.6 58 103-163 320-377 (389)
146 TIGR00218 manA mannose-6-phosp 92.7 0.8 1.7E-05 43.3 9.5 60 102-164 233-293 (302)
147 COG1476 Predicted transcriptio 92.5 0.011 2.3E-07 43.9 -2.8 42 28-69 16-62 (68)
148 PF14525 AraC_binding_2: AraC- 92.4 0.56 1.2E-05 39.1 7.1 54 123-177 54-107 (172)
149 PF08007 Cupin_4: Cupin superf 92.3 0.37 8E-06 46.0 6.6 61 227-289 120-205 (319)
150 TIGR01015 hmgA homogentisate 1 92.3 0.92 2E-05 45.0 9.4 66 112-178 133-201 (429)
151 PRK05341 homogentisate 1,2-dio 92.3 0.49 1.1E-05 47.0 7.6 64 112-176 139-206 (438)
152 PLN02658 homogentisate 1,2-dio 92.2 0.82 1.8E-05 45.4 9.0 65 112-177 132-200 (435)
153 PF02373 JmjC: JmjC domain, hy 92.1 0.16 3.5E-06 40.0 3.4 27 259-285 81-107 (114)
154 COG1741 Pirin-related protein 92.1 0.27 5.9E-06 46.2 5.3 66 224-289 48-118 (276)
155 PF06052 3-HAO: 3-hydroxyanthr 92.1 0.44 9.6E-06 40.7 6.0 55 228-283 41-99 (151)
156 KOG2107 Uncharacterized conser 91.3 0.4 8.7E-06 41.5 5.1 48 118-165 87-138 (179)
157 PF14525 AraC_binding_2: AraC- 91.1 1.8 3.9E-05 35.9 8.9 42 244-285 58-99 (172)
158 PRK10072 putative transcriptio 90.5 0.025 5.3E-07 44.9 -2.9 39 28-66 48-90 (96)
159 PRK11396 hypothetical protein; 90.4 6.6 0.00014 35.0 12.0 84 89-174 19-108 (191)
160 PF06865 DUF1255: Protein of u 89.5 2.6 5.5E-05 33.3 7.8 81 204-292 10-92 (94)
161 PF09313 DUF1971: Domain of un 89.0 2.5 5.5E-05 32.5 7.3 50 122-171 23-79 (82)
162 PRK00924 5-keto-4-deoxyuronate 89.0 1.7 3.7E-05 40.8 7.6 51 242-292 75-127 (276)
163 PF05995 CDO_I: Cysteine dioxy 88.9 3.2 6.9E-05 36.1 8.9 79 207-288 64-157 (175)
164 COG3508 HmgA Homogentisate 1,2 88.7 1.7 3.8E-05 42.1 7.5 54 121-175 143-197 (427)
165 PRK04140 hypothetical protein; 88.7 0.066 1.4E-06 51.2 -2.0 104 28-137 141-250 (317)
166 PF07847 DUF1637: Protein of u 87.8 1.5 3.3E-05 39.3 6.2 70 219-290 43-138 (200)
167 COG5553 Predicted metal-depend 87.7 1.9 4.1E-05 37.4 6.4 75 209-286 62-148 (191)
168 cd00093 HTH_XRE Helix-turn-hel 87.6 0.07 1.5E-06 35.2 -1.9 39 27-65 13-56 (58)
169 PF13443 HTH_26: Cro/C1-type H 87.5 0.031 6.8E-07 39.8 -3.9 42 28-69 12-59 (63)
170 PF11142 DUF2917: Protein of u 87.1 2.1 4.5E-05 31.2 5.5 55 109-164 2-57 (63)
171 PRK10579 hypothetical protein; 87.0 4.1 9E-05 32.1 7.5 80 204-292 10-92 (94)
172 PRK02866 cyanate hydratase; Va 86.8 0.099 2.2E-06 44.6 -1.8 42 27-68 19-65 (147)
173 TIGR03830 CxxCG_CxxCG_HTH puta 86.6 0.064 1.4E-06 43.6 -3.0 39 28-66 80-122 (127)
174 PF13744 HTH_37: Helix-turn-he 86.6 0.072 1.6E-06 40.4 -2.5 40 27-66 32-77 (80)
175 COG3123 Uncharacterized protei 86.2 2.6 5.6E-05 32.7 5.8 47 125-171 42-89 (94)
176 COG1898 RfbC dTDP-4-dehydrorha 86.2 2.9 6.3E-05 36.7 6.9 58 229-286 54-125 (173)
177 TIGR00673 cynS cyanate hydrata 86.2 0.072 1.6E-06 45.5 -3.0 52 17-69 13-69 (150)
178 PF13621 Cupin_8: Cupin-like d 85.6 0.85 1.8E-05 40.6 3.5 27 259-285 209-235 (251)
179 PF05962 HutD: HutD; InterPro 85.5 0.66 1.4E-05 40.9 2.6 51 122-175 133-183 (184)
180 COG3620 Predicted transcriptio 85.1 0.14 3E-06 44.4 -1.8 34 27-60 19-57 (187)
181 TIGR01221 rmlC dTDP-4-dehydror 84.7 6 0.00013 34.7 8.3 64 228-292 52-130 (176)
182 TIGR01321 TrpR trp operon repr 83.9 0.21 4.7E-06 39.4 -1.0 32 24-55 53-86 (94)
183 cd01392 HTH_LacI Helix-turn-he 82.2 0.28 6.2E-06 33.3 -0.9 24 31-54 2-25 (52)
184 COG1898 RfbC dTDP-4-dehydrorha 80.9 6.2 0.00013 34.6 6.8 68 113-180 54-137 (173)
185 PF08007 Cupin_4: Cupin superf 80.8 11 0.00024 35.8 9.2 63 105-167 114-200 (319)
186 PF00908 dTDP_sugar_isom: dTDP 80.7 11 0.00024 33.0 8.4 57 228-285 51-124 (176)
187 PF09313 DUF1971: Domain of un 80.6 11 0.00023 29.0 7.2 45 244-289 28-79 (82)
188 TIGR01221 rmlC dTDP-4-dehydror 80.5 5.8 0.00013 34.8 6.6 70 112-181 52-138 (176)
189 PF13621 Cupin_8: Cupin-like d 79.3 2.7 5.9E-05 37.3 4.3 23 144-166 210-232 (251)
190 PF00908 dTDP_sugar_isom: dTDP 77.7 8.4 0.00018 33.7 6.7 61 122-182 65-139 (176)
191 PHA02984 hypothetical protein; 77.4 9.8 0.00021 35.6 7.2 52 126-179 95-150 (286)
192 COG5553 Predicted metal-depend 77.1 35 0.00076 29.8 10.0 86 104-191 73-168 (191)
193 COG1396 HipB Predicted transcr 77.0 0.28 6E-06 35.4 -2.5 43 27-69 15-63 (120)
194 PHA00672 hypothetical protein 76.4 14 0.00031 30.9 7.2 69 220-290 47-115 (152)
195 COG3718 IolB Uncharacterized e 76.4 22 0.00048 32.8 9.1 87 207-295 15-112 (270)
196 PHA00542 putative Cro-like pro 76.4 0.3 6.5E-06 37.3 -2.4 29 27-55 32-61 (82)
197 smart00352 POU Found in Pit-Oc 76.4 0.33 7.2E-06 36.7 -2.1 28 28-55 26-59 (75)
198 PRK11753 DNA-binding transcrip 76.3 16 0.00036 31.5 8.3 69 108-176 22-101 (211)
199 PRK15186 AraC family transcrip 76.2 5.9 0.00013 37.4 5.7 41 125-165 39-79 (291)
200 PF02678 Pirin: Pirin; InterP 75.4 9.8 0.00021 30.6 6.0 57 116-172 41-103 (107)
201 PF06719 AraC_N: AraC-type tra 75.0 19 0.00041 30.5 8.1 41 123-164 22-62 (155)
202 PF00027 cNMP_binding: Cyclic 74.7 7.4 0.00016 28.2 4.9 66 110-175 3-78 (91)
203 COG3806 ChrR Transcriptional a 74.3 7.9 0.00017 34.7 5.6 55 219-278 127-181 (216)
204 PRK09391 fixK transcriptional 73.6 20 0.00044 31.9 8.3 62 218-280 34-101 (230)
205 PRK09391 fixK transcriptional 72.9 24 0.00051 31.5 8.6 73 104-176 36-115 (230)
206 PRK10856 cytoskeletal protein 72.6 0.46 1E-05 45.7 -2.7 42 28-69 29-81 (331)
207 cd00038 CAP_ED effector domain 72.4 22 0.00047 26.4 7.2 69 108-176 19-97 (115)
208 PF01238 PMI_typeI: Phosphoman 71.2 12 0.00026 36.6 6.6 108 145-258 252-372 (373)
209 PF04209 HgmA: homogentisate 1 71.1 24 0.00052 35.3 8.7 73 218-294 123-197 (424)
210 COG3758 Uncharacterized protei 70.2 34 0.00074 30.5 8.6 87 73-164 6-102 (193)
211 COG2850 Uncharacterized conser 67.8 8.8 0.00019 37.5 4.8 55 111-166 126-202 (383)
212 PHA02890 hypothetical protein; 67.4 21 0.00047 33.2 6.9 48 126-174 94-144 (278)
213 cd00038 CAP_ED effector domain 66.3 20 0.00044 26.5 5.8 49 222-271 17-71 (115)
214 PHA00672 hypothetical protein 65.5 38 0.00082 28.4 7.4 62 102-165 45-106 (152)
215 PF11142 DUF2917: Protein of u 65.3 18 0.00039 26.2 5.0 56 224-281 1-58 (63)
216 KOG1356 Putative transcription 63.2 2.8 6E-05 44.7 0.5 60 222-282 757-822 (889)
217 PRK13355 bifunctional HTH-doma 63.1 1.1 2.4E-05 45.2 -2.4 42 28-69 18-69 (517)
218 COG3123 Uncharacterized protei 62.5 29 0.00064 26.9 5.8 59 228-291 31-91 (94)
219 PRK11161 fumarate/nitrate redu 62.0 52 0.0011 29.0 8.5 67 110-176 41-116 (235)
220 PF00166 Cpn10: Chaperonin 10 62.0 12 0.00027 29.0 3.9 53 242-295 35-89 (93)
221 PF00027 cNMP_binding: Cyclic 61.4 16 0.00034 26.4 4.3 46 226-272 3-54 (91)
222 COG3806 ChrR Transcriptional a 61.3 22 0.00048 31.9 5.7 67 103-174 127-195 (216)
223 PRK11753 DNA-binding transcrip 61.2 41 0.00088 29.0 7.5 50 221-271 19-74 (211)
224 TIGR00223 panD L-aspartate-alp 61.2 5.4 0.00012 33.1 1.7 45 222-276 44-92 (126)
225 cd06919 Asp_decarbox Aspartate 61.2 5.5 0.00012 32.4 1.7 45 222-276 43-91 (111)
226 PF04622 ERG2_Sigma1R: ERG2 an 61.0 38 0.00083 30.8 7.3 59 121-180 116-176 (216)
227 PF02373 JmjC: JmjC domain, hy 60.8 19 0.00041 27.9 4.9 24 144-167 82-105 (114)
228 PF07385 DUF1498: Protein of u 59.8 25 0.00054 32.1 5.9 40 125-165 137-176 (225)
229 COG2850 Uncharacterized conser 59.5 15 0.00033 35.9 4.7 60 218-282 119-202 (383)
230 PRK00364 groES co-chaperonin G 58.9 32 0.00069 27.0 5.7 48 243-293 37-86 (95)
231 PRK13918 CRP/FNR family transc 58.0 46 0.001 28.5 7.3 68 109-176 9-87 (202)
232 PRK05449 aspartate alpha-decar 57.7 6.7 0.00014 32.6 1.7 45 222-276 44-92 (126)
233 COG3717 KduI 5-keto 4-deoxyuro 57.4 32 0.00069 31.8 6.1 48 244-291 79-128 (278)
234 cd04867 TGS_YchF_C TGS_YchF_C: 56.5 4.3 9.4E-05 31.3 0.4 24 248-271 58-81 (83)
235 COG3822 ABC-type sugar transpo 55.0 21 0.00046 31.9 4.5 67 218-285 84-179 (225)
236 PF08535 KorB: KorB domain; I 53.7 1 2.2E-05 34.9 -3.5 34 27-60 4-37 (93)
237 PF07385 DUF1498: Protein of u 53.6 87 0.0019 28.6 8.3 68 218-285 85-180 (225)
238 TIGR02466 conserved hypothetic 52.6 61 0.0013 28.9 7.2 67 224-291 100-194 (201)
239 smart00100 cNMP Cyclic nucleot 47.8 55 0.0012 24.1 5.4 50 221-271 16-71 (120)
240 TIGR02408 ectoine_ThpD ectoine 45.8 22 0.00047 33.1 3.3 36 260-295 212-250 (277)
241 PRK10402 DNA-binding transcrip 45.4 1.4E+02 0.0029 26.4 8.4 69 108-176 33-111 (226)
242 TIGR02147 Fsuc_second hypothet 44.9 5.1 0.00011 37.6 -1.0 41 26-66 27-73 (271)
243 PRK13918 CRP/FNR family transc 44.7 51 0.0011 28.2 5.4 49 222-271 6-62 (202)
244 PF06071 YchF-GTPase_C: Protei 44.5 3.3 7.2E-05 32.0 -1.9 24 249-272 59-82 (84)
245 COG1813 Predicted transcriptio 44.3 3.2 6.8E-05 36.1 -2.3 42 28-69 94-140 (165)
246 COG2731 EbgC Beta-galactosidas 43.4 42 0.00091 28.9 4.4 38 257-294 110-149 (154)
247 PF13413 HTH_25: Helix-turn-he 42.2 2.4 5.3E-05 30.6 -2.8 23 28-50 12-34 (62)
248 COG3822 ABC-type sugar transpo 42.2 69 0.0015 28.7 5.6 25 141-165 151-175 (225)
249 PRK05341 homogentisate 1,2-dio 42.0 83 0.0018 31.6 6.8 70 219-291 132-203 (438)
250 PF00829 Ribosomal_L21p: Ribos 41.5 29 0.00062 27.3 2.9 23 252-274 3-25 (96)
251 PF06719 AraC_N: AraC-type tra 40.2 2.2E+02 0.0048 23.8 9.3 56 237-292 19-77 (155)
252 cd00320 cpn10 Chaperonin 10 Kd 39.8 67 0.0015 25.0 4.8 47 243-290 36-84 (93)
253 PRK15186 AraC family transcrip 39.7 58 0.0013 30.7 5.3 41 244-284 41-82 (291)
254 TIGR03697 NtcA_cyano global ni 39.1 1.6E+02 0.0034 24.8 7.5 55 122-176 9-75 (193)
255 COG0664 Crp cAMP-binding prote 38.9 76 0.0016 26.7 5.5 70 108-177 25-104 (214)
256 PRK11396 hypothetical protein; 38.4 2.9E+02 0.0063 24.6 10.7 98 193-292 6-111 (191)
257 COG3128 PiuC Uncharacterized i 38.2 46 0.001 29.8 4.0 37 141-177 142-182 (229)
258 PF10949 DUF2777: Protein of u 38.1 36 0.00078 30.2 3.3 42 236-279 52-93 (185)
259 TIGR00061 L21 ribosomal protei 37.7 44 0.00094 26.7 3.5 21 252-272 2-22 (101)
260 KOG1686 Mitochondrial/chloropl 37.4 41 0.00089 28.6 3.4 34 249-285 25-58 (151)
261 PRK05573 rplU 50S ribosomal pr 37.4 45 0.00097 26.7 3.5 22 252-273 3-24 (103)
262 PF07022 Phage_CI_repr: Bacter 37.2 4.3 9.2E-05 29.5 -2.3 39 25-64 11-55 (66)
263 TIGR00092 GTP-binding protein 36.9 19 0.0004 35.3 1.5 27 248-274 341-367 (368)
264 PF08452 DNAP_B_exo_N: DNA pol 36.9 16 0.00035 20.9 0.6 17 274-290 4-20 (22)
265 PHA02984 hypothetical protein; 36.0 98 0.0021 29.1 5.9 50 246-295 98-161 (286)
266 PRK09392 ftrB transcriptional 36.0 1.9E+02 0.0041 25.4 7.8 69 108-176 32-109 (236)
267 PRK05467 Fe(II)-dependent oxyg 35.9 91 0.002 28.4 5.7 33 142-174 140-176 (226)
268 PLN02868 acyl-CoA thioesterase 34.3 92 0.002 30.6 5.9 69 108-176 33-108 (413)
269 PF05721 PhyH: Phytanoyl-CoA d 33.7 42 0.0009 28.2 3.0 27 259-285 180-207 (211)
270 TIGR01015 hmgA homogentisate 1 32.6 1.4E+02 0.003 29.9 6.7 69 219-291 126-196 (429)
271 PF04814 HNF-1_N: Hepatocyte n 32.4 5.9 0.00013 34.9 -2.5 19 28-46 133-151 (180)
272 PTZ00491 major vault protein; 32.4 7.1E+02 0.015 27.3 12.3 31 124-155 278-318 (850)
273 PF01238 PMI_typeI: Phosphoman 32.2 22 0.00048 34.7 1.2 21 261-281 252-272 (373)
274 PLN02868 acyl-CoA thioesterase 32.0 1.9E+02 0.004 28.4 7.6 51 220-271 29-84 (413)
275 PLN02658 homogentisate 1,2-dio 31.8 2.8E+02 0.006 28.0 8.6 70 219-291 125-196 (435)
276 PHA02890 hypothetical protein; 31.1 1.2E+02 0.0027 28.3 5.7 50 246-295 97-158 (278)
277 PRK10202 ebgC cryptic beta-D-g 31.1 71 0.0015 27.0 4.0 35 257-293 104-138 (149)
278 PRK09601 GTP-binding protein Y 30.5 30 0.00066 33.8 1.8 53 221-274 290-363 (364)
279 PF05986 ADAM_spacer1: ADAM-TS 30.4 1.6E+02 0.0035 23.5 5.8 46 223-268 18-64 (114)
280 PF02082 Rrf2: Transcriptional 30.1 5 0.00011 30.2 -3.0 26 23-48 22-47 (83)
281 PF04074 DUF386: Domain of unk 29.8 86 0.0019 26.3 4.3 35 259-293 113-149 (153)
282 PRK10402 DNA-binding transcrip 29.5 1.6E+02 0.0034 26.0 6.2 65 222-287 31-106 (226)
283 PF13640 2OG-FeII_Oxy_3: 2OG-F 29.0 2.5E+02 0.0054 21.0 7.1 29 263-291 66-95 (100)
284 KOG0126 Predicted RNA-binding 28.7 79 0.0017 28.2 3.8 47 249-295 33-87 (219)
285 COG1959 Predicted transcriptio 28.4 8.7 0.00019 32.6 -2.1 26 23-48 22-47 (150)
286 PRK12335 tellurite resistance 28.4 1.1E+02 0.0025 28.2 5.2 55 229-283 20-82 (287)
287 CHL00075 rpl21 ribosomal prote 28.3 71 0.0015 25.8 3.3 21 252-272 5-25 (108)
288 KOG1356 Putative transcription 28.0 22 0.00048 38.2 0.4 25 141-165 797-821 (889)
289 smart00354 HTH_LACI helix_turn 28.0 8 0.00017 28.2 -2.1 24 28-51 2-25 (70)
290 PF00165 HTH_AraC: Bacterial r 27.8 4.4 9.5E-05 26.4 -3.2 22 27-48 9-30 (42)
291 PF04831 Popeye: Popeye protei 26.9 2.1E+02 0.0045 24.6 6.0 72 222-293 28-108 (153)
292 COG0234 GroS Co-chaperonin Gro 26.7 67 0.0015 25.5 2.8 42 243-284 37-80 (96)
293 PRK04980 hypothetical protein; 26.4 47 0.001 26.6 1.9 51 246-296 14-66 (102)
294 PRK11161 fumarate/nitrate redu 26.3 1.2E+02 0.0027 26.6 4.9 46 224-270 39-90 (235)
295 PF07847 DUF1637: Protein of u 26.1 62 0.0013 29.0 2.8 38 102-139 42-80 (200)
296 PF12851 Tet_JBP: Oxygenase do 25.8 1.2E+02 0.0026 26.3 4.5 36 257-292 126-168 (171)
297 PRK10202 ebgC cryptic beta-D-g 25.7 1.1E+02 0.0024 25.8 4.2 32 144-175 107-138 (149)
298 cd05792 S1_eIF1AD_like S1_eIF1 25.3 38 0.00081 25.8 1.1 32 260-294 36-67 (78)
299 PF02261 Asp_decarbox: Asparta 24.8 15 0.00032 30.2 -1.3 45 221-275 43-91 (116)
300 KOG0498 K+-channel ERG and rel 24.7 92 0.002 33.4 4.2 43 112-154 448-494 (727)
301 COG3508 HmgA Homogentisate 1,2 24.5 2.6E+02 0.0055 27.6 6.7 47 239-285 144-190 (427)
302 PF13412 HTH_24: Winged helix- 24.3 7.8 0.00017 25.8 -2.6 22 24-45 15-36 (48)
303 KOG1113 cAMP-dependent protein 23.9 56 0.0012 31.9 2.2 45 109-153 266-311 (368)
304 KOG3995 3-hydroxyanthranilate 23.6 3.5E+02 0.0075 24.8 7.0 64 101-167 205-268 (279)
305 PF10975 DUF2802: Protein of u 23.2 16 0.00035 27.1 -1.2 15 27-41 45-59 (70)
306 PTZ00258 GTP-binding protein; 23.0 49 0.0011 32.7 1.7 28 250-277 363-390 (390)
307 PF13510 Fer2_4: 2Fe-2S iron-s 23.0 60 0.0013 24.5 1.9 20 134-154 3-22 (82)
308 PRK13450 atpC F0F1 ATP synthas 22.8 3.1E+02 0.0068 22.5 6.3 37 102-138 36-72 (132)
309 PRK12335 tellurite resistance 22.7 2.4E+02 0.0053 26.0 6.3 53 113-165 20-80 (287)
310 COG2731 EbgC Beta-galactosidas 22.5 1.6E+02 0.0035 25.3 4.6 36 142-177 111-150 (154)
311 COG0664 Crp cAMP-binding prote 22.4 1.5E+02 0.0034 24.7 4.6 52 220-272 21-78 (214)
312 PHA01083 hypothetical protein 21.8 19 0.00041 30.8 -1.2 38 28-65 18-61 (149)
313 KOG3706 Uncharacterized conser 21.4 65 0.0014 32.9 2.2 72 109-180 321-419 (629)
314 PF13759 2OG-FeII_Oxy_5: Putat 21.0 1.6E+02 0.0034 22.7 3.9 24 259-282 66-89 (101)
315 COG0853 PanD Aspartate 1-decar 20.6 42 0.00092 27.8 0.6 47 221-277 42-92 (126)
316 PF04831 Popeye: Popeye protei 20.5 2E+02 0.0044 24.7 4.7 45 107-152 29-75 (153)
317 PF04967 HTH_10: HTH DNA bindi 20.5 13 0.00027 26.2 -2.2 22 24-45 21-42 (53)
318 PF04545 Sigma70_r4: Sigma-70, 20.3 7 0.00015 26.4 -3.5 23 26-48 20-42 (50)
No 1
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=100.00 E-value=8.4e-68 Score=487.97 Aligned_cols=243 Identities=35% Similarity=0.618 Sum_probs=230.2
Q ss_pred hcccCCcceeeeeeeeEeCCCCeeeccCCCCCcceEEEEecCCCC--CcEEEEEEEEcCCCcCCCC-CCCc-eEEEEEEE
Q 022278 57 QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALP-PHDV-ERFIFVVQ 132 (300)
Q Consensus 57 ~~~lg~trs~f~~~~av~~~e~~~~~~~p~~~~~~~~~L~sp~~g--~~f~~~lv~l~PG~~~~~~-~h~g-EEf~yVLe 132 (300)
++.|.+|||+++++|||++|++.+.+.+|+|++++.++|++|..| ++|++++++++||+.+..+ .|.+ |||+||++
T Consensus 9 ~~~~~~~r~~~~~~~a~i~p~~~~~~~vp~~~~~~~~~l~~P~~g~~~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~ 88 (260)
T TIGR03214 9 QKQLLTTRAVVHGNYAVITPDGLVSNIVPGFENTDIWILSRPKLGFAATFVQYIVEVHPGGGNTTGFGGEGIETFLFVIS 88 (260)
T ss_pred hhhcccceEEEEcceEEECCcceecccCCCCcccEEEEEcCCCCCCCCcEEEEEEEECCCCcCCCCCCCCceEEEEEEEe
Confidence 567889999999999999999999999999999999999999999 8999999999999877544 4555 99999999
Q ss_pred CEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeeccccCC-CCcceeeccCCCCCCcccCC-ceeEE
Q 022278 133 GSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLEN-HITEQIVGSTDKQPLLETPG-EVFQL 208 (300)
Q Consensus 133 G~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~~g-~~p~~~~~~~~d~~~~~~~g-~~~~~ 208 (300)
|++++++ +|+++.|++||++|||++.+|+++| +++|+++||.|+|+|++| .+|.++++|++|++..+++| +++.+
T Consensus 89 G~l~v~~-~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k~y~~~~g~~~~~~vvg~~~dv~~~~~~g~~~~~~ 167 (260)
T TIGR03214 89 GEVNVTA-EGETHELREGGYAYLPPGSKWTLANAQAEDARFFLYKKRYQPVEGLHAPELVVGNEKDIEPEPYEGMDDVIL 167 (260)
T ss_pred CEEEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEeeeEEcCCCCCCCeeecCHHHCCccccCCCCcEEE
Confidence 9999999 9999999999999999999999999 679999999999999999 88999999999999999987 77788
Q ss_pred EEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEE
Q 022278 209 RKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR 288 (300)
Q Consensus 209 ~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~ 288 (300)
+.|+|++.+++|+|++++|+||+++|+||||+|||++|||+|+|+|++||+|++|++||+|||+|||+||++|+|+++++
T Consensus 168 ~~llp~~~~~~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~ 247 (260)
T TIGR03214 168 TTLLPKELAFDMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFR 247 (260)
T ss_pred EEeCchhcCCCcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCEEEEecCCCEEEECCCCCEEEEecCCCcEE
Confidence 88778788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCC
Q 022278 289 YLLYKDVNRNPL 300 (300)
Q Consensus 289 fi~~kd~nr~~~ 300 (300)
||+||||||||.
T Consensus 248 ~l~ykd~nr~~~ 259 (260)
T TIGR03214 248 YLLYKDMNRHVK 259 (260)
T ss_pred EEEEccccCCCC
Confidence 999999999984
No 2
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=100.00 E-value=4.1e-63 Score=433.88 Aligned_cols=243 Identities=35% Similarity=0.620 Sum_probs=231.8
Q ss_pred hhcccCCcceeeeeeeeEeCCCCe-eeccCCCCCcceEEEEecCCCC--CcEEEEEEEEcCCCcCCCC--CCCceEEEEE
Q 022278 56 LQDLPGFTRSVYKRDHALITPESH-VLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALP--PHDVERFIFV 130 (300)
Q Consensus 56 I~~~lg~trs~f~~~~av~~~e~~-~~~~~p~~~~~~~~~L~sp~~g--~~f~~~lv~l~PG~~~~~~--~h~gEEf~yV 130 (300)
.++-|..+|+.|+..+++|++... |.+.+|.|++++.++++.|..| +.|.+|++++.|+|.+..+ ....|.|+||
T Consensus 10 ~q~~Ll~~RA~f~~ayavIpk~~~iVts~Lp~w~~tr~wilsrP~~Gf~~tF~qyive~~p~GGs~~~e~d~~ae~~lfV 89 (264)
T COG3257 10 YQTDLLANRAIFKEAYAVIPKGVMIVTSILPFWENTRAWILSRPLSGFAATFVQYIVELHPNGGSQRPEGDEGAETFLFV 89 (264)
T ss_pred hhhhhhhchhhhccccEEecCCcEEEEeecCCCCCceEEEEeccccchhhhhhhheEEECCCCCCCCCCCCCcceEEEEE
Confidence 367889999999999999999987 8899999999999999999998 7999999999999977655 4577999999
Q ss_pred EECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeeccccCCC-CcceeeccCCCCCCcccCC-cee
Q 022278 131 VQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVF 206 (300)
Q Consensus 131 LeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~~g~-~p~~~~~~~~d~~~~~~~g-~~~ 206 (300)
++|++++.+ +|+++.|++|+++|+||+..|+++| .+++|+.|++|+|++.+|. +|+.+++|.+|++..+++| +++
T Consensus 90 v~Ge~tv~~-~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk~Y~~VdG~~~P~~~~~Ne~ei~~~~m~gtdg~ 168 (264)
T COG3257 90 VSGEITVKA-EGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRKRYQPVEGVQAPELVSGNESEIEPSPMEGTDGV 168 (264)
T ss_pred EeeeEEEEE-cCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEEeecceeecCccCCcceecChhhCCCCCCCCCCCe
Confidence 999999999 9999999999999999999999999 6899999999999999996 9999999999999999998 776
Q ss_pred EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCcc
Q 022278 207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR 286 (300)
Q Consensus 207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~ 286 (300)
....++|+|.++||+|++++|+||++||+.|+|++||++|||||+|+|++|..|+||++||+|||.++||||+++.|...
T Consensus 169 ~attv~P~d~r~Dmhv~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrLn~dwv~V~aGD~mwm~A~cpQacyagG~g~ 248 (264)
T COG3257 169 IATTVLPKELRFDMHVHIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRLNNNWVPVEAGDYIWMGAYCPQACYAGGRGA 248 (264)
T ss_pred EEEeeCccccCcceEEEEEEecCCcccchhhhhhhhcceEEEecceEEeecCceEEeecccEEEeeccChhhhccCCCCc
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecCCCC
Q 022278 287 TRYLLYKDVNRNP 299 (300)
Q Consensus 287 ~~fi~~kd~nr~~ 299 (300)
++||+|||||||+
T Consensus 249 frYLlyKDvNRh~ 261 (264)
T COG3257 249 FRYLLYKDVNRHV 261 (264)
T ss_pred eEEEEEecccccc
Confidence 9999999999997
No 3
>PRK11171 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-59 Score=430.57 Aligned_cols=243 Identities=38% Similarity=0.665 Sum_probs=227.8
Q ss_pred hcccCCcceeeeeeeeEeCCCCeeeccCCCCCcceEEEEecCCCCCcEEEEEEEEcCCCcCCCC-CC-CceEEEEEEECE
Q 022278 57 QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP-PH-DVERFIFVVQGS 134 (300)
Q Consensus 57 ~~~lg~trs~f~~~~av~~~e~~~~~~~p~~~~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~-~h-~gEEf~yVLeG~ 134 (300)
++.|+.|||++.+++++++|++++.+.+|+|.++..++|++|..++.|++++++++||+....+ .| ++|||+|||+|+
T Consensus 14 ~~~~~~~r~~~~~~~a~~~p~~~v~~~lp~~~~~~~~~L~~~~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~ 93 (266)
T PRK11171 14 QTDLLTTRAVVTEAYAVIPPDDIVTSVLPGWENTRAWVLARPGLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGE 93 (266)
T ss_pred cccccccceEEecCeEEECCcCEEeecCCCCCCeEEEEEeCCCCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCE
Confidence 4789999999999999999999999999999999999999998889999999999999887555 33 679999999999
Q ss_pred EEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEeeccccCCC-CcceeeccCCCCCCcccCC-ceeEEEE
Q 022278 135 AMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVFQLRK 210 (300)
Q Consensus 135 v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~~y~~~~g~-~p~~~~~~~~d~~~~~~~g-~~~~~~~ 210 (300)
+++++ +|+++.|.+||++|||++.+|+++| +++|+++|+.++|+|.++. +|.++++|++|++.++++| .+..+++
T Consensus 94 l~v~~-~g~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~~y~~~~~~~~p~~~~~~~~d~~~~~~~g~~g~~~~~ 172 (266)
T PRK11171 94 ITLTL-EGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRKRYEPVEGHEAPEAFVGNESDIEPIPMPGTDGVWATT 172 (266)
T ss_pred EEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEcCCeEcCCCCCCCeEecchhcccccccCCCCCeEEEE
Confidence 99999 9999999999999999999999999 7899999999999999995 8999999999999999987 4545555
Q ss_pred -ee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEE
Q 022278 211 -LL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR 288 (300)
Q Consensus 211 -l~-p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~ 288 (300)
++ |++.++++.|++++|+||++++++|+|.+||.+|||+|+|++++||+|++|++||+||++++++|+|+|+|+++++
T Consensus 173 ~~~~p~~~~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~ 252 (266)
T PRK11171 173 RLVDPEDLRFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFR 252 (266)
T ss_pred EeeCchhcCCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCCEEEECCCCCcEE
Confidence 44 6777888999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCC
Q 022278 289 YLLYKDVNRNPL 300 (300)
Q Consensus 289 fi~~kd~nr~~~ 300 (300)
||+||||||||+
T Consensus 253 yl~~k~~nr~~~ 264 (266)
T PRK11171 253 YLLYKDVNRHPE 264 (266)
T ss_pred EEEEcccccCcc
Confidence 999999999985
No 4
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.93 E-value=9.2e-24 Score=203.62 Aligned_cols=188 Identities=16% Similarity=0.236 Sum_probs=143.5
Q ss_pred cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEc--CCcEEE--eccCcEEEeCCCCceEEee-CCeEEEEEEEee
Q 022278 103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA--SGVSSK--LMVDSYTYLPPNFAHSLRA-EGSATLVVFERR 177 (300)
Q Consensus 103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~--gg~~~~--L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~~ 177 (300)
.|++..+++.||+..+.|.|...|++||++|++.+++. +|+.+. |++||++|||++..|.++| ++.++++++...
T Consensus 66 ~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~ 145 (367)
T TIGR03404 66 AIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDD 145 (367)
T ss_pred cccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCC
Confidence 69999999999999888888899999999999999983 267774 9999999999999999998 667888873222
Q ss_pred ------c----------cccC-------------------------C----------------CCcceeeccCCCCCCcc
Q 022278 178 ------Y----------ASLE-------------------------N----------------HITEQIVGSTDKQPLLE 200 (300)
Q Consensus 178 ------y----------~~~~-------------------------g----------------~~p~~~~~~~~d~~~~~ 200 (300)
. .|.+ | ..|..+.-+..++++..
T Consensus 146 ~~f~~~~~~~~~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 225 (367)
T TIGR03404 146 GNFSEDGTFLVTDWLAHTPKDVLAKNFGVPESAFDNLPLKELYIFPGTVPGPLDQEAVTGPAGEVPGPFTYHLSEQKPKQ 225 (367)
T ss_pred cccCCcceeeHHHHHHhCCHHHHHHHhCCCHHHHHhccccCceEEecCCCCccccccCcCCCCCCCccEEEEhhhCCcee
Confidence 1 0000 0 01111111222333333
Q ss_pred cCCceeEEEEeeCCCC--CcceEEEEEEecCCcccCcceeec-cceEEEEEEeeEEEEe-----CCEEEEccCCcEEEeC
Q 022278 201 TPGEVFQLRKLLPQAV--PFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRL-----GDSWYPVQAGDVLWMA 272 (300)
Q Consensus 201 ~~g~~~~~~~l~p~~~--~~~~~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~~-----~g~~~~v~~GD~i~~~ 272 (300)
..||. ++.+.+.+. ...+.+..++++||+..+. |.|. .+|.+|||+|++++++ ++++.++++||++|+|
T Consensus 226 ~~gG~--~~~~~~~~~p~~~~~s~~~~~l~PG~~~~~-H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP 302 (367)
T TIGR03404 226 VPGGT--VRIADSTNFPVSKTIAAAIVTVEPGAMREL-HWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVP 302 (367)
T ss_pred cCCce--EEEEChhhccCcceEEEEEEEECCCCccCC-eeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEEC
Confidence 34443 355555432 3568999999999999997 5565 5688999999999998 3689999999999999
Q ss_pred CCCceeEEecCCccEEEEEEe
Q 022278 273 PFVPQWYAALGKTRTRYLLYK 293 (300)
Q Consensus 273 ~~~~H~~~n~G~e~~~fi~~k 293 (300)
+|..|.++|+|+++++||+.=
T Consensus 303 ~g~~H~i~N~G~e~l~fL~if 323 (367)
T TIGR03404 303 RNMGHYVENTGDETLVFLEVF 323 (367)
T ss_pred CCCeEEEEECCCCCEEEEEEE
Confidence 999999999999999999963
No 5
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.90 E-value=1.3e-23 Score=184.35 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=120.8
Q ss_pred cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeeee-------eeEeCCCCeeeccCCCCCcceEEE
Q 022278 27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKRD-------HALITPESHVLSPLPEWTNTLGAY 94 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~~-------~av~~~e~~~~~~~p~~~~~~~~~ 94 (300)
-|+++||+++|+|+++|||+|||..+|+. |+++||++...|+.. ..+++++++.... ..+.....
T Consensus 21 lt~~elA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~v~~~~e~~~~~---~~g~~~~~ 97 (185)
T PRK09943 21 LSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMG---SQGVSMKL 97 (185)
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHccCccccCCcceEEchhHhhccc---cCCceEEE
Confidence 47899999999999999999999999998 999999999999862 2345555543321 12344455
Q ss_pred EecCCCCCcEEEEEEEEcCCCcCCC-CCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEE
Q 022278 95 LITPAMGSHFVMYLANMQENARSAL-PPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATL 171 (300)
Q Consensus 95 L~sp~~g~~f~~~lv~l~PG~~~~~-~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~v 171 (300)
+.....+..+++++.+++||+.... +.|.++||+||++|++++++ +|+++.|++||++|||++.+|+|+| ++++++
T Consensus 98 l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~-~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~ 176 (185)
T PRK09943 98 VHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI-NGQDYHLVAGQSYAINTGIPHSFSNTSAGICRI 176 (185)
T ss_pred eccCCCCCeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEE-CCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEE
Confidence 5544555788999999999987643 47999999999999999999 9999999999999999999999999 678999
Q ss_pred EEEEe
Q 022278 172 VVFER 176 (300)
Q Consensus 172 l~v~~ 176 (300)
+|+..
T Consensus 177 l~~~~ 181 (185)
T PRK09943 177 ISAHT 181 (185)
T ss_pred EEEeC
Confidence 99854
No 6
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.69 E-value=2.6e-16 Score=130.39 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=85.8
Q ss_pred eeeccCCCCCCcccC--C-ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEE-e-CCEEEE
Q 022278 188 QIVGSTDKQPLLETP--G-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR-L-GDSWYP 262 (300)
Q Consensus 188 ~~~~~~~d~~~~~~~--g-~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~-~-~g~~~~ 262 (300)
++|.+.+|++..++. + +++++|++.+.+ +..+.+++++|+||+.++.|.||. +|.+|||+|++.++ + ||++++
T Consensus 1 ~~v~~~~~~~~~~~~~~~~~~~~krll~~~~-~~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g~~~~ 78 (125)
T PRK13290 1 MIVRTLDEIEGTERDVKAGNWTSRRLLLKDD-GMGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATGEVHP 78 (125)
T ss_pred CeEEEHHHccCcceeeecCCceEEEEEEecC-CCCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCCEEEE
Confidence 578889999999974 3 566777777643 477888999999999999754444 57999999999999 7 599999
Q ss_pred ccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278 263 VQAGDVLWMAPFVPQWYAALGKTRTRYLLY 292 (300)
Q Consensus 263 v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 292 (300)
++|||.++++++.+|++.|. +++++|+-
T Consensus 79 L~aGD~i~~~~~~~H~~~N~--e~~~~l~v 106 (125)
T PRK13290 79 IRPGTMYALDKHDRHYLRAG--EDMRLVCV 106 (125)
T ss_pred eCCCeEEEECCCCcEEEEcC--CCEEEEEE
Confidence 99999999999999999998 89999885
No 7
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.59 E-value=1.6e-14 Score=119.63 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=73.0
Q ss_pred ceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEE-EcC-CcEEEeccCcEEEeCCCCceEEeeCC
Q 022278 90 TLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLT-NAS-GVSSKLMVDSYTYLPPNFAHSLRAEG 167 (300)
Q Consensus 90 ~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~-v~g-g~~~~L~~Gds~yfpa~~~H~~~N~~ 167 (300)
...+++. +..+..|.++.++++||+..+.|.|..+|++|||+|+++++ + + |+++.|++||++|||++.+|+++|.+
T Consensus 22 ~~krll~-~~~~~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i-~~g~~~~L~aGD~i~~~~~~~H~~~N~e 99 (125)
T PRK13290 22 TSRRLLL-KDDGMGFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL-ATGEVHPIRPGTMYALDKHDRHYLRAGE 99 (125)
T ss_pred eEEEEEE-ecCCCCEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc-CCCEEEEeCCCeEEEECCCCcEEEEcCC
Confidence 3444444 56678999999999999988777444468999999999999 8 6 99999999999999999999999999
Q ss_pred eEEEEEEEe
Q 022278 168 SATLVVFER 176 (300)
Q Consensus 168 ~a~vl~v~~ 176 (300)
++++||+..
T Consensus 100 ~~~~l~v~t 108 (125)
T PRK13290 100 DMRLVCVFN 108 (125)
T ss_pred CEEEEEEEC
Confidence 999999954
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.56 E-value=1.6e-14 Score=106.25 Aligned_cols=67 Identities=21% Similarity=0.459 Sum_probs=63.0
Q ss_pred EEEecCCcccCcceeeccc-eEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 224 IMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 224 ~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
+++|+||+.++. |+|..+ +.+|||+|++.+.+||+++.+++||+++++++++|++.|.|+++++||.
T Consensus 2 ~~~~~pG~~~~~-h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~ 69 (71)
T PF07883_consen 2 LVTLPPGGSIPP-HRHPGEDEFFYVLSGEGTLTVDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLV 69 (71)
T ss_dssp EEEEETTEEEEE-EEESSEEEEEEEEESEEEEEETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEE
T ss_pred EEEECCCCCCCC-EECCCCCEEEEEEECCEEEEEccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEE
Confidence 578999999997 567777 9999999999999999999999999999999999999999999999986
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.55 E-value=5.3e-14 Score=116.55 Aligned_cols=89 Identities=24% Similarity=0.393 Sum_probs=78.0
Q ss_pred eeEEE-EeeCCCCCcceEEEEEEecCCcccCcceeec-cceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEec
Q 022278 205 VFQLR-KLLPQAVPFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL 282 (300)
Q Consensus 205 ~~~~~-~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~ 282 (300)
.+.++ .+++.+.+..+.+..++|+||+.++. |+|+ .++.+|||+|++.++++|+.+.+++||+|++++|+.||+.|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~v~~~~G~~~~~-H~hp~~~~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~ 105 (131)
T COG1917 27 VAVVKSRVLPRNEGENLSVVLVTFEPGAVIPW-HTHPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKAV 105 (131)
T ss_pred ceEEEeeeccCCCCceEEEEEEEECCCccccc-ccCCCcceEEEEEecEEEEEecCCceEecCCCEEEECCCCeeeeccC
Confidence 33444 45577778889999999999999997 7887 779999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEee
Q 022278 283 GKTRTRYLLYKD 294 (300)
Q Consensus 283 G~e~~~fi~~kd 294 (300)
+++++.+|+...
T Consensus 106 ~~~~~~~l~v~~ 117 (131)
T COG1917 106 EDEPMVLLLVFP 117 (131)
T ss_pred CCCceeEEEEee
Confidence 999877776553
No 10
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.48 E-value=1.2e-13 Score=101.50 Aligned_cols=66 Identities=26% Similarity=0.464 Sum_probs=61.2
Q ss_pred EEEEcCCCcCCCCCCCce-EEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEE
Q 022278 108 LANMQENARSALPPHDVE-RFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF 174 (300)
Q Consensus 108 lv~l~PG~~~~~~~h~gE-Ef~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v 174 (300)
+++++||+..+.|.|..+ |++||++|++++.+ +|+++.|++||++++|++.+|.++| ++++++++|
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-DGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE-TTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE-ccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 678999997777878777 99999999999999 9999999999999999999999999 689999987
No 11
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=8e-13 Score=109.55 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=70.7
Q ss_pred CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEee
Q 022278 217 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD 294 (300)
Q Consensus 217 ~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd 294 (300)
+..+.+..++++||+.++.++||.-.|.+|||+|+|.+++||+...|++||.+++|+|.+|.+.|+|..||++|+-..
T Consensus 33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~ 110 (127)
T COG0662 33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQS 110 (127)
T ss_pred CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEec
Confidence 346788899999999987766666778999999999999999999999999999999999999999999999998643
No 12
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.39 E-value=5.3e-12 Score=116.81 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=80.5
Q ss_pred CC-ceeEEEEeeCCCCC--cceEEEEEEecCCcccCcceee-ccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCce
Q 022278 202 PG-EVFQLRKLLPQAVP--FDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ 277 (300)
Q Consensus 202 ~g-~~~~~~~l~p~~~~--~~~~~~~~tl~PG~~~p~~~~H-~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H 277 (300)
+| .+++.+.|.+...+ ..|.+.+++++||+....+++| .+||.+|||+|+..++++|+++.+++||++|++++++|
T Consensus 37 p~~~~~~~~~l~~P~~g~~~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~~~~L~~Gd~~y~pa~~~H 116 (260)
T TIGR03214 37 PGFENTDIWILSRPKLGFAATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGETHELREGGYAYLPPGSKW 116 (260)
T ss_pred CCCcccEEEEEcCCCCCCCCcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCE
Confidence 55 66788888855444 6789999999999876554444 56899999999999999999999999999999999999
Q ss_pred eEEecCCccEEEEEEee
Q 022278 278 WYAALGKTRTRYLLYKD 294 (300)
Q Consensus 278 ~~~n~G~e~~~fi~~kd 294 (300)
.+.|.|+++++|++++-
T Consensus 117 ~~~N~~~~~a~~l~v~k 133 (260)
T TIGR03214 117 TLANAQAEDARFFLYKK 133 (260)
T ss_pred EEEECCCCCEEEEEEEe
Confidence 99999999999999873
No 13
>PRK11171 hypothetical protein; Provisional
Probab=99.38 E-value=6e-12 Score=116.81 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=81.6
Q ss_pred cCC-ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceee-ccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCcee
Q 022278 201 TPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQW 278 (300)
Q Consensus 201 ~~g-~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H-~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~ 278 (300)
++| ++...+.|.+.+.+..+.+.+++++||+....+.|| ..||.+|||+|+..+++||+++.+++||.++++++.+|.
T Consensus 41 lp~~~~~~~~~L~~~~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~~~~L~~GDsi~~p~~~~H~ 120 (266)
T PRK11171 41 LPGWENTRAWVLARPGLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGKTHALSEGGYAYLPPGSDWT 120 (266)
T ss_pred CCCCCCeEEEEEeCCCCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEE
Confidence 455 566777788766677788899999999987765444 568899999999999999999999999999999999999
Q ss_pred EEecCCccEEEEEEee
Q 022278 279 YAALGKTRTRYLLYKD 294 (300)
Q Consensus 279 ~~n~G~e~~~fi~~kd 294 (300)
|.|.|++++++|+.+-
T Consensus 121 ~~N~g~~~a~~l~v~~ 136 (266)
T PRK11171 121 LRNAGAEDARFHWIRK 136 (266)
T ss_pred EEECCCCCEEEEEEEc
Confidence 9999999999998753
No 14
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=99.35 E-value=4.7e-11 Score=113.86 Aligned_cols=201 Identities=15% Similarity=0.221 Sum_probs=137.0
Q ss_pred ceEEEEecCCC-CC-----cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEE-EEEcCCcEEEeccCcEEEeCCCCceE
Q 022278 90 TLGAYLITPAM-GS-----HFVMYLANMQENARSALPPHDVERFIFVVQGSAM-LTNASGVSSKLMVDSYTYLPPNFAHS 162 (300)
Q Consensus 90 ~~~~~L~sp~~-g~-----~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~-l~v~gg~~~~L~~Gds~yfpa~~~H~ 162 (300)
.++-+|..|.. |. .+...+-.|+||.....|.|...-+.||++|+.. ..| ||+++.+++||.+..|+...|.
T Consensus 61 Rrvl~l~NP~~~g~~~~t~tl~a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V-~g~~~~~~~gD~~~tP~w~wH~ 139 (335)
T TIGR02272 61 RRVLVLENPGLRGQSSITTSLYAGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAV-DGERTTMHPGDFIITPSWTWHD 139 (335)
T ss_pred eEEEEEeCCCCCCccccchhHHhhhEEeCCCCCCCccccccceEEEEEEcCceEEEE-CCEEEeeeCCCEEEeCCCeeEe
Confidence 45556666663 31 3444577789999999999999999999999985 567 9999999999999999999999
Q ss_pred EeeCCeEEEEEEEe-----------ec-cccC----------C---------CCcceeeccCCC-----CCCccc-----
Q 022278 163 LRAEGSATLVVFER-----------RY-ASLE----------N---------HITEQIVGSTDK-----QPLLET----- 201 (300)
Q Consensus 163 ~~N~~~a~vl~v~~-----------~y-~~~~----------g---------~~p~~~~~~~~d-----~~~~~~----- 201 (300)
..|+...-++|..- -| +..+ | ..|-.....-.. .|+..+
T Consensus 140 H~n~~d~~~~wld~lD~Pl~~~l~~~f~e~~~~~~~~~~~~~~~~~~~~g~~l~P~~~~~~~~~sP~~~ypw~~~~~aL~ 219 (335)
T TIGR02272 140 HGNPGDEPMIWLDGLDIPLVQLFDCSFAEGYPEDQQPVTRPEGDSLARYGHNMLPVRHKRSDRSSPIFNYPYERSREALD 219 (335)
T ss_pred cccCCCCcEEEEecCCHHHHHhhCcceeccccccccccccCCcchhhhcccCccccccccCCCCCCceecCcHHHHHHHH
Confidence 99955555777211 11 1110 0 011110000011 233221
Q ss_pred ------C--C-ceeEEEEeeCCCCCc---ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEE
Q 022278 202 ------P--G-EVFQLRKLLPQAVPF---DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVL 269 (300)
Q Consensus 202 ------~--g-~~~~~~~l~p~~~~~---~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i 269 (300)
+ + .++.++-.-|...+. .+...+-.|.||..... |.|....++||++|+|...+||+..+.++||++
T Consensus 220 ~~~~~~~~~~~~g~~l~y~NP~TG~~~~pti~~~~q~L~~G~~t~~-~r~T~s~Vf~VieG~G~s~ig~~~~~W~~gD~f 298 (335)
T TIGR02272 220 DLTRTGEWDPWHGLKLRYVNPATGGYPMPTIGAFIQLLPKGFRTAT-YRSTDATVFCVVEGRGQVRIGDAVFRFSPKDVF 298 (335)
T ss_pred HHHhccCCCCCceEEEEEeCCCCCCCcchhHHHHHhccCCCCCCCC-ccccccEEEEEEeCeEEEEECCEEEEecCCCEE
Confidence 1 1 333443344654432 23333456677777764 799999999999999999999999999999999
Q ss_pred EeCCCCceeEEecCCccEEEEEEee
Q 022278 270 WMAPFVPQWYAALGKTRTRYLLYKD 294 (300)
Q Consensus 270 ~~~~~~~H~~~n~G~e~~~fi~~kd 294 (300)
.+|+...|...|. ++...+.+-|
T Consensus 299 ~vPsW~~~~h~a~--~da~Lf~~~D 321 (335)
T TIGR02272 299 VVPSWHPVRFEAS--DDAVLFSFSD 321 (335)
T ss_pred EECCCCcEecccC--CCeEEEEecC
Confidence 9999999988885 4566666554
No 15
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.32 E-value=1.8e-11 Score=107.29 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=73.3
Q ss_pred eEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCc
Q 022278 206 FQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT 285 (300)
Q Consensus 206 ~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e 285 (300)
+..+.|.+.+....+-+-+.+++||+..+.+++|..+|.+|||+|+..+++||+.+.+++||.++++++++|.+.|.|++
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~ 172 (185)
T PRK09943 93 VSMKLVHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAG 172 (185)
T ss_pred ceEEEeccCCCCCeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCC
Confidence 34444545444444555567899999877667888889999999999999999999999999999999999999999999
Q ss_pred cEEEEEE
Q 022278 286 RTRYLLY 292 (300)
Q Consensus 286 ~~~fi~~ 292 (300)
++++|+.
T Consensus 173 ~~~~l~~ 179 (185)
T PRK09943 173 ICRIISA 179 (185)
T ss_pred CeEEEEE
Confidence 9999986
No 16
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.31 E-value=2.3e-11 Score=100.77 Aligned_cols=82 Identities=20% Similarity=0.332 Sum_probs=69.3
Q ss_pred EecCCCCCcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC--CeEEE
Q 022278 95 LITPAMGSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE--GSATL 171 (300)
Q Consensus 95 L~sp~~g~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~--~~a~v 171 (300)
+..+..+..+.+.+++++||+....|.|+ +++.+|||+|++++++ +|+.+.+++||++++|+|+.|.+.|. ....+
T Consensus 34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~-~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~ 112 (131)
T COG1917 34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL-EGEKKELKAGDVIIIPPGVVHGLKAVEDEPMVL 112 (131)
T ss_pred eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEe-cCCceEecCCCEEEECCCCeeeeccCCCCceeE
Confidence 33444678899999999999999999897 9999999999999999 89999999999999999999999983 33344
Q ss_pred EEEEee
Q 022278 172 VVFERR 177 (300)
Q Consensus 172 l~v~~~ 177 (300)
|.+...
T Consensus 113 l~v~~~ 118 (131)
T COG1917 113 LLVFPL 118 (131)
T ss_pred EEEeee
Confidence 544333
No 17
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.29 E-value=1.8e-11 Score=122.09 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=69.6
Q ss_pred CCCCcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEE
Q 022278 99 AMGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFE 175 (300)
Q Consensus 99 ~~g~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~ 175 (300)
..+.+|++.+++++||++.+.+ +|.++|++||++|++++++ +|+++.|.+||++|||++.+|+|+| ++++++|||.
T Consensus 380 ~~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i-dg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~ 458 (478)
T PRK15460 380 DAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI-DGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVR 458 (478)
T ss_pred cCCCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE-CCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 3467899999999999977555 5677899999999999999 9999999999999999999999999 7899999994
Q ss_pred e
Q 022278 176 R 176 (300)
Q Consensus 176 ~ 176 (300)
.
T Consensus 459 ~ 459 (478)
T PRK15460 459 S 459 (478)
T ss_pred c
Confidence 3
No 18
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.28 E-value=1.7e-11 Score=122.23 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=67.9
Q ss_pred CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278 217 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 292 (300)
Q Consensus 217 ~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 292 (300)
+..+.+..++++||+.++.|.||..+|.+|||+|++.+++||+.+.+++||.++++++.+|++.|.|++++++|+-
T Consensus 373 ~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v 448 (468)
T TIGR01479 373 GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEV 448 (468)
T ss_pred CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 4568889999999999887655544556799999999999999999999999999999999999999999999875
No 19
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.27 E-value=2e-11 Score=121.70 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=68.2
Q ss_pred CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278 217 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 292 (300)
Q Consensus 217 ~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 292 (300)
+..+.+.+++++||++++.+.||.-+|.+||++|++.+++||+++.+++||.++++++.+|+++|.|++|+++|+-
T Consensus 382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 4568889999999998866555555578889999999999999999999999999999999999999999999974
No 20
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.27 E-value=5.3e-11 Score=100.57 Aligned_cols=78 Identities=17% Similarity=0.320 Sum_probs=69.6
Q ss_pred cceEEEEEEecCCcccCcceeec-cceEEEEEEeeEEEEeCCE------EEEccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278 218 FDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDS------WYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 290 (300)
Q Consensus 218 ~~~~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~~~g~------~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi 290 (300)
.++.+..++++||+..+. |.|. .++.+||++|++.+.++++ .+.+++||+++++++.+|++.|.|+++++|+
T Consensus 28 ~~~~~~~~~i~pg~~~~~-h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l 106 (146)
T smart00835 28 LGISAARVNLEPGGMLPP-HYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFV 106 (146)
T ss_pred CceEEEEEEecCCcCcCC-eeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEE
Confidence 368899999999999996 5554 6689999999999999876 8999999999999999999999999999999
Q ss_pred EEeecC
Q 022278 291 LYKDVN 296 (300)
Q Consensus 291 ~~kd~n 296 (300)
++..-+
T Consensus 107 ~~~~~~ 112 (146)
T smart00835 107 AFNTND 112 (146)
T ss_pred EEecCC
Confidence 986533
No 21
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.22 E-value=4.1e-11 Score=101.54 Aligned_cols=82 Identities=18% Similarity=0.300 Sum_probs=71.0
Q ss_pred ecCCCC-CcEEEEEEEEcCCCcCC-CC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCC--CceEEee--CCe
Q 022278 96 ITPAMG-SHFVMYLANMQENARSA-LP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA--EGS 168 (300)
Q Consensus 96 ~sp~~g-~~f~~~lv~l~PG~~~~-~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~--~~H~~~N--~~~ 168 (300)
+..+.| ++|-..+.+++||+.+. .| ++..|||+|||+|++++.+ |+.++.|++||++=||+| ..|.+.| +..
T Consensus 33 lG~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~-d~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~ 111 (161)
T COG3837 33 LGDALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE-DGGETRLRPGDSAGFPAGVGNAHHLINRSDVI 111 (161)
T ss_pred hhhhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEE-CCeeEEecCCceeeccCCCcceeEEeecCCce
Confidence 344556 78999999999999874 45 5677999999999999999 999999999999999999 9999999 678
Q ss_pred EEEEEEEeec
Q 022278 169 ATLVVFERRY 178 (300)
Q Consensus 169 a~vl~v~~~y 178 (300)
+++|.|..+-
T Consensus 112 ~~yL~vG~r~ 121 (161)
T COG3837 112 LRYLEVGTRE 121 (161)
T ss_pred EEEEEecccc
Confidence 8999986654
No 22
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.22 E-value=7e-11 Score=117.77 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=66.5
Q ss_pred CCCCcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEE
Q 022278 99 AMGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFE 175 (300)
Q Consensus 99 ~~g~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~ 175 (300)
..+.+|.+..++++||++.+.| +|..+|++||++|++++++ ||+++.|++||++|+|++.+|+++| +++++++|+.
T Consensus 371 ~~~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~-dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 371 DQGDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI-GDETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred ecCCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE-CCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 3467899999999999987655 3334566699999999999 9999999999999999999999999 7899999994
No 23
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=99.21 E-value=3.6e-10 Score=103.71 Aligned_cols=196 Identities=15% Similarity=0.130 Sum_probs=107.4
Q ss_pred cceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE---EEeccCcEEEeCCCCceEEee
Q 022278 89 NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS---SKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 89 ~~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~---~~L~~Gds~yfpa~~~H~~~N 165 (300)
+.....|-..........+++.+++|-++++|.|...+-+|||+|.+ .. |+.. .-|.+|++.+.|+|..|.-..
T Consensus 21 ~~~~~~L~gd~~~~g~~~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~--~~-~~~~a~~~~l~~Gsy~~~PaG~~h~~~~ 97 (251)
T PF14499_consen 21 GPGAAVLWGDPTKDGPSGMRVKFPAGFSSPPHIHNADYRGTVISGEL--HN-GDPKAAAMWLPAGSYWFQPAGEPHITAA 97 (251)
T ss_dssp --EEEEEEEE--TTS-EEEEEEE-TT-EE--BEESS-EEEEEEESEE--EE-TTEE-----E-TTEEEEE-TT-EEEETT
T ss_pred CcceeeeecCcccCCcceEEEEcCCCccCCCcceeeeEEEEEEEeEE--Ec-CCCcccceecCCCceEeccCCCceeeec
Confidence 34455555544344566678999999998999999999999999975 45 6554 349999999999998886665
Q ss_pred CCeEEEEEE---Eeecc--ccC-----CCCcce------eeccCCCCCCcccC-C--ceeEEEEeeC--CCCCcceEEEE
Q 022278 166 EGSATLVVF---ERRYA--SLE-----NHITEQ------IVGSTDKQPLLETP-G--EVFQLRKLLP--QAVPFDFNIHI 224 (300)
Q Consensus 166 ~~~a~vl~v---~~~y~--~~~-----g~~p~~------~~~~~~d~~~~~~~-g--~~~~~~~l~p--~~~~~~~~~~~ 224 (300)
.+...++|+ .-+|. |.+ |.+|.. ++-+-+|++|...+ + .++.+..|-. .+......|.+
T Consensus 98 ~~~~~~~~~e~g~gp~~v~p~~~~~~~~e~p~n~~~~~ivwld~~dl~W~~~~~~~~~g~~~a~Lwgd~~~g~~~gll~k 177 (251)
T PF14499_consen 98 EGETNLLFIEIGEGPYDVKPSEEAFDNGERPINVDKDNIVWLDASDLEWISAPPGPPPGAQIAFLWGDPNTGQYTGLLLK 177 (251)
T ss_dssp S-EE-EEEEE-S---EE---------SS--TT--GGG-EEEEECCCS--EE-SSSTT-SEEEEEEEE-TTS-EE-EEEEE
T ss_pred cCccEEEEEEeCCCccccccccccccccccccccccccceEeccccCCccccCCCCCCcceEEEEecCCCCCceeeEEEE
Confidence 444445555 33443 332 334444 34467778888776 3 5667777753 33223344334
Q ss_pred EEecCCcccCcceeeccceEEEEEEeeEEEEe--CCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 225 MDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 225 ~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~--~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
-|++..+..++|.-++..|+++|+..|.. +++...+.+|++.+-+....|+.. .+++++.+++
T Consensus 178 ---LPagf~g~i~~h~~~eraVvI~G~~~~~~~~~~~~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyI 242 (251)
T PF14499_consen 178 ---LPAGFTGRIHTHASNERAVVISGELDYQSYGASNFGTLDPGSYFGSPGHITHGIF-ITEDECVLYI 242 (251)
T ss_dssp ----SSEE--SEEE--S-EEEEEEEEEEEETTEEEETTEEEEE-TT-EE--E-------EESS-EEEEE
T ss_pred ---cCCCCcCceeccCCceEEEEEEeEEEEeecccCCCccccCCcccccCCccccccc-ccCCCEEEEE
Confidence 48888888899999999999999999944 467788999999999999999999 7777776654
No 24
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.6e-10 Score=95.69 Aligned_cols=74 Identities=16% Similarity=0.322 Sum_probs=63.3
Q ss_pred CCCcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEE
Q 022278 100 MGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF 174 (300)
Q Consensus 100 ~g~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v 174 (300)
.+..+..-.+.+.||+....+ +|..+|+.||++|+..+++ +|++..|++||++|+|+|.+|+++| +.+..++.+
T Consensus 32 ~~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~-~~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 32 AGDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI-GGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred cCCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE-CCEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 356788889999999986554 4448999999999999999 9999999999999999999999999 445666655
No 25
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.20 E-value=1e-10 Score=99.95 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=69.5
Q ss_pred CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 217 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 217 ~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
+..+.++++++.||..+.++.|+.-.|..+|++|.|.+.+||+.+.+++||.+|+|+|+.|.+.|.|++|+++|=
T Consensus 60 ~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IE 134 (151)
T PF01050_consen 60 GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIE 134 (151)
T ss_pred cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEE
Confidence 345889999999999999976777778899999999999999999999999999999999999999999999984
No 26
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.18 E-value=2.4e-10 Score=101.16 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=67.2
Q ss_pred eeCCCCCcceEEEEEEecCCccc-----Ccceeec---cceEEEEEEeeEEEEeCCE-----EEEccCCcEEEeCCCCce
Q 022278 211 LLPQAVPFDFNIHIMDFQPGDFL-----NVKEVHY---NQHGLLLLEGQGIYRLGDS-----WYPVQAGDVLWMAPFVPQ 277 (300)
Q Consensus 211 l~p~~~~~~~~~~~~tl~PG~~~-----p~~~~H~---~eh~~~iL~G~G~~~~~g~-----~~~v~~GD~i~~~~~~~H 277 (300)
..+.....++.+.+.++.||... ...|.|. ..|.+|+|+|+|.+.+++. +++++|||++++|+|..|
T Consensus 59 ~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H 138 (191)
T PRK04190 59 IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAH 138 (191)
T ss_pred ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcE
Confidence 34544456788999999999962 1124553 3489999999999999754 799999999999999999
Q ss_pred eEEecCCccEEEEEE
Q 022278 278 WYAALGKTRTRYLLY 292 (300)
Q Consensus 278 ~~~n~G~e~~~fi~~ 292 (300)
.+.|+|++|++|++.
T Consensus 139 ~~iN~G~epl~fl~v 153 (191)
T PRK04190 139 RSVNTGDEPLVFLAC 153 (191)
T ss_pred EeEECCCCCEEEEEE
Confidence 999999999999984
No 27
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.10 E-value=7.4e-10 Score=93.55 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=66.6
Q ss_pred CCcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCc------EEEeccCcEEEeCCCCceEEee--CCeEEE
Q 022278 101 GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGV------SSKLMVDSYTYLPPNFAHSLRA--EGSATL 171 (300)
Q Consensus 101 g~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~------~~~L~~Gds~yfpa~~~H~~~N--~~~a~v 171 (300)
+.++.+..++++||+....|.|. .+|++||++|++++.+ +++ ++.+++||++++|++..|.+.| ++++++
T Consensus 27 ~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~-~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~ 105 (146)
T smart00835 27 GLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGV-VDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEF 105 (146)
T ss_pred cCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEE-EeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEE
Confidence 45799999999999998888664 8999999999999998 665 8999999999999999999998 678999
Q ss_pred EEEEe
Q 022278 172 VVFER 176 (300)
Q Consensus 172 l~v~~ 176 (300)
+++..
T Consensus 106 l~~~~ 110 (146)
T smart00835 106 VAFNT 110 (146)
T ss_pred EEEec
Confidence 88744
No 28
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=5.9e-10 Score=90.42 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=66.8
Q ss_pred CCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC---EEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 216 VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD---SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 216 ~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g---~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
++....|+.+|+.||+....|+|...|-.+|+|+|+..++-++ ....++|||++|+|||+||+-.|.+++|++-++
T Consensus 42 Gas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vI 120 (142)
T COG4101 42 GASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVI 120 (142)
T ss_pred ccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEE
Confidence 3457889999999999998766666777799999999999997 567899999999999999999999999987654
No 29
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.05 E-value=9.1e-10 Score=93.41 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=71.8
Q ss_pred cceEEEEEEecCCcccCcceee-ccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCC--CceeEEecCCccEEEEEEee
Q 022278 218 FDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPF--VPQWYAALGKTRTRYLLYKD 294 (300)
Q Consensus 218 ~~~~~~~~tl~PG~~~p~~~~H-~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~--~~H~~~n~G~e~~~fi~~kd 294 (300)
.++-+++..++||...-..|-| .++|-+|||+|++.++.||.++.|+|||++=.++| .-|.+.|.|+.+++||+--|
T Consensus 40 ~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~ 119 (161)
T COG3837 40 KRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGGETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVGT 119 (161)
T ss_pred hhcccceEEeCCCCccccccccccCceEEEEEcCceEEEECCeeEEecCCceeeccCCCcceeEEeecCCceEEEEEecc
Confidence 5788999999999986554444 56677899999999999999999999999999999 88999999999999999888
Q ss_pred cCCC
Q 022278 295 VNRN 298 (300)
Q Consensus 295 ~nr~ 298 (300)
-+++
T Consensus 120 r~~~ 123 (161)
T COG3837 120 REPD 123 (161)
T ss_pred cccc
Confidence 7664
No 30
>PLN00212 glutelin; Provisional
Probab=99.00 E-value=8.1e-08 Score=95.97 Aligned_cols=74 Identities=11% Similarity=0.224 Sum_probs=61.0
Q ss_pred ceEEEEEEecCCcccCcceeeccc-eEEEEEEeeEEEEe---CCE-EE--EccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 219 DFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL---GDS-WY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 219 ~~~~~~~tl~PG~~~p~~~~H~~e-h~~~iL~G~G~~~~---~g~-~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
++.+.+..|.||+..+. |.|... ++.||++|+|.+-+ +|. .+ .|++||++++|.|.+|..++. ++.|.|++
T Consensus 347 ~LSa~rv~L~~gam~~P-Hwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~-~egfe~v~ 424 (493)
T PLN00212 347 QMSATRVNLYQNALLSP-FWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAE-REGCQYIA 424 (493)
T ss_pred CeeEEEEEEcCCcccCC-eecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeec-CCceEEEE
Confidence 57788999999999986 677766 66899999998875 222 22 799999999999999998775 67799999
Q ss_pred Eee
Q 022278 292 YKD 294 (300)
Q Consensus 292 ~kd 294 (300)
+|-
T Consensus 425 F~t 427 (493)
T PLN00212 425 FKT 427 (493)
T ss_pred eec
Confidence 993
No 31
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.99 E-value=2.7e-09 Score=86.62 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=65.8
Q ss_pred CCCC-cEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCc---EEEeccCcEEEeCCCCceEEee--CCeEEE
Q 022278 99 AMGS-HFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGV---SSKLMVDSYTYLPPNFAHSLRA--EGSATL 171 (300)
Q Consensus 99 ~~g~-~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~---~~~L~~Gds~yfpa~~~H~~~N--~~~a~v 171 (300)
..|+ ...|-+++|+||++...|.|+ -|..+|||+|+...+. |++ ....++||+||+||+++|.-.| ++++..
T Consensus 40 tvGas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~-G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~ 118 (142)
T COG4101 40 TVGASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWY-GNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSA 118 (142)
T ss_pred hcccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeee-ccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEE
Confidence 4464 799999999999999888654 5888999999999999 653 4689999999999999999888 556665
Q ss_pred EEEEeeccccCC
Q 022278 172 VVFERRYASLEN 183 (300)
Q Consensus 172 l~v~~~y~~~~g 183 (300)
+++ |-.|.+.
T Consensus 119 vIa--RsDp~~~ 128 (142)
T COG4101 119 VIA--RSDPNPQ 128 (142)
T ss_pred EEE--ccCCCCC
Confidence 555 4444433
No 32
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.94 E-value=7.2e-09 Score=100.43 Aligned_cols=86 Identities=13% Similarity=0.199 Sum_probs=70.7
Q ss_pred EEEEecCCCC--CcEEEEEEEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEc----CCcEEEeccCcEEEeCCCCceEEe
Q 022278 92 GAYLITPAMG--SHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNA----SGVSSKLMVDSYTYLPPNFAHSLR 164 (300)
Q Consensus 92 ~~~L~sp~~g--~~f~~~lv~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~----gg~~~~L~~Gds~yfpa~~~H~~~ 164 (300)
++.+-++... +.|.+..++|+||+..+.|.|. .+|++||++|++++++. +++++.|++||.+|+|+|..|+++
T Consensus 231 ~~~~~~~~~p~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~ 310 (367)
T TIGR03404 231 VRIADSTNFPVSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVE 310 (367)
T ss_pred EEEEChhhccCcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEE
Confidence 3444444333 4689999999999999999666 68999999999999982 257899999999999999999999
Q ss_pred e--CCeEEEEEEEee
Q 022278 165 A--EGSATLVVFERR 177 (300)
Q Consensus 165 N--~~~a~vl~v~~~ 177 (300)
| ++++++|++-+-
T Consensus 311 N~G~e~l~fL~if~s 325 (367)
T TIGR03404 311 NTGDETLVFLEVFKA 325 (367)
T ss_pred ECCCCCEEEEEEECC
Confidence 9 678999998443
No 33
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.92 E-value=5.3e-09 Score=88.03 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=54.7
Q ss_pred CC-CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC---------cEEEeccCcEEEeCCCCceEEee-C--
Q 022278 100 MG-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG---------VSSKLMVDSYTYLPPNFAHSLRA-E-- 166 (300)
Q Consensus 100 ~g-~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg---------~~~~L~~Gds~yfpa~~~H~~~N-~-- 166 (300)
.| +.+++++-++.||..++.|.|..||.++||+|+.++.+ .+ +++...+++++++|++..|++.| +
T Consensus 39 hGmkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l-~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~ 117 (167)
T PF02041_consen 39 HGMKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYL-ASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEH 117 (167)
T ss_dssp H--SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE---SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SS
T ss_pred cCceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEE-ecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCC
Confidence 35 68999999999999999999999999999999999998 32 35889999999999999999998 3
Q ss_pred CeEEEEEEEee
Q 022278 167 GSATLVVFERR 177 (300)
Q Consensus 167 ~~a~vl~v~~~ 177 (300)
++.+++++.+|
T Consensus 118 eDlqvlViiSr 128 (167)
T PF02041_consen 118 EDLQVLVIISR 128 (167)
T ss_dssp S-EEEEEEEES
T ss_pred cceEEEEEecC
Confidence 78999998654
No 34
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.84 E-value=2.3e-08 Score=84.21 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=61.6
Q ss_pred ceeeccCCCCCCcccCCceeEEEEeeCC---CCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCE----
Q 022278 187 EQIVGSTDKQPLLETPGEVFQLRKLLPQ---AVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS---- 259 (300)
Q Consensus 187 ~~~~~~~~d~~~~~~~g~~~~~~~l~p~---~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~---- 259 (300)
-.++.|++++|...+.-++ ...+-+.. .+-.++.|=.-||.||..+|. |.|.-||.++||+|+|...+.+.
T Consensus 9 ~~~Vr~iselpq~~ygr~G-LsH~TvAGa~~hGmkevEVwlQTfAPG~~TPi-HRHsCEEVFvVLkG~GTl~l~~~~~~~ 86 (167)
T PF02041_consen 9 LPLVRNISELPQDNYGRPG-LSHITVAGALLHGMKEVEVWLQTFAPGSATPI-HRHSCEEVFVVLKGSGTLYLASSHEKY 86 (167)
T ss_dssp --SEEEGGGS--B-TT-TT-EEEEEEE-HHHH--SSEEEEEEEE-TT-B--E-EEESS-EEEEEEE--EEEEE--SSSSS
T ss_pred CceeEEhhhCccccccCCC-cceEEeehhhhcCceeeeEEeeeecCCCCCCC-ccccccEEEEEEecceEEEEecccccC
Confidence 4578899999988874333 22222222 233567888899999999997 89999999999999999999853
Q ss_pred -----EEEccCCcEEEeCCCCceeEEecCC-ccEEEEE
Q 022278 260 -----WYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLL 291 (300)
Q Consensus 260 -----~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~ 291 (300)
++++.++|.+.||+|+.|++.|++. |++..++
T Consensus 87 pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlV 124 (167)
T PF02041_consen 87 PGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLV 124 (167)
T ss_dssp --S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEE
T ss_pred CCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEE
Confidence 5889999999999999999999995 8877665
No 35
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.81 E-value=3.3e-08 Score=83.27 Aligned_cols=89 Identities=18% Similarity=0.298 Sum_probs=65.6
Q ss_pred EEEEeeCCCCC-----cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEE--eCC--------EEEE--ccCCcEE
Q 022278 207 QLRKLLPQAVP-----FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR--LGD--------SWYP--VQAGDVL 269 (300)
Q Consensus 207 ~~~~l~p~~~~-----~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~--~~g--------~~~~--v~~GD~i 269 (300)
.++.+.+.+.. ..++++..+++||+.... |.|...+.+||++|+|++. ..+ .... +++||++
T Consensus 16 ~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~P-h~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~ 94 (144)
T PF00190_consen 16 RIREADSEDFPILLGLNGVAVRRVLIEPGGLRAP-HYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVF 94 (144)
T ss_dssp EEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEE-EEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEE
T ss_pred EEEEEChhhCcceecccceEEEeeehhcCCccce-eEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccce
Confidence 45556655531 467888899999999986 5556668999999999943 232 3444 9999999
Q ss_pred EeCCCCceeEEecC-CccEEEEEEeecC
Q 022278 270 WMAPFVPQWYAALG-KTRTRYLLYKDVN 296 (300)
Q Consensus 270 ~~~~~~~H~~~n~G-~e~~~fi~~kd~n 296 (300)
++|+|.+||+.|+| ++.+.++++...+
T Consensus 95 ~vP~G~~h~~~n~~~~~~~~~~~f~~~~ 122 (144)
T PF00190_consen 95 VVPAGHPHWIINDGDDEALVLIIFDTNN 122 (144)
T ss_dssp EE-TT-EEEEEECSSSSEEEEEEEEESS
T ss_pred eeccceeEEEEcCCCCCCEEEEEEECCC
Confidence 99999999999999 5667777766543
No 36
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.81 E-value=3e-08 Score=85.15 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=59.0
Q ss_pred cCCCcCCCCCCCceEEEEEEECEEEEEEc-CCc--EEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccc
Q 022278 112 QENARSALPPHDVERFIFVVQGSAMLTNA-SGV--SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYAS 180 (300)
Q Consensus 112 ~PG~~~~~~~h~gEEf~yVLeG~v~l~v~-gg~--~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~ 180 (300)
.||.+...|.|+++|++|||+|++.+.+. +|+ ...|++||++.+|+|++|+....+.+..|+|+++=.+
T Consensus 36 Gpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~ 107 (159)
T TIGR03037 36 GPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQ 107 (159)
T ss_pred CCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCC
Confidence 56666777888899999999999999772 343 8999999999999999999998888999999877554
No 37
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=98.73 E-value=7.5e-07 Score=82.66 Aligned_cols=167 Identities=15% Similarity=0.149 Sum_probs=106.4
Q ss_pred CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC-cEEEeccC--------cEEEeCCCCceEEeeCCeEEEE
Q 022278 102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG-VSSKLMVD--------SYTYLPPNFAHSLRAEGSATLV 172 (300)
Q Consensus 102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg-~~~~L~~G--------ds~yfpa~~~H~~~N~~~a~vl 172 (300)
+-+..-+++|++|........+.|-.+..|+|++++++ +| +.+.|..- |++|+|.|..-.+.+.+.+++.
T Consensus 25 ~~~~~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~-~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~ 103 (261)
T PF04962_consen 25 MYMGFGVLRLEAGESLEFELERRELGVVNLGGKATVTV-DGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFA 103 (261)
T ss_dssp CCBECCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEE-TTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEE
T ss_pred cccceEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEe-CCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEE
Confidence 33444478899988776666777888999999999999 87 78899998 9999999999999987779999
Q ss_pred EEEeeccccCCCCcceeeccCCCCCCcccCC--ceeEEEEeeCC-CCCcceEEEEEEecCCcc---cCcceeecc-----
Q 022278 173 VFERRYASLENHITEQIVGSTDKQPLLETPG--EVFQLRKLLPQ-AVPFDFNIHIMDFQPGDF---LNVKEVHYN----- 241 (300)
Q Consensus 173 ~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~g--~~~~~~~l~p~-~~~~~~~~~~~tl~PG~~---~p~~~~H~~----- 241 (300)
+.+.+. +..-|..++. .+|++...... ....++.++.. ....+..+--.++.||+. .| .|+|..
T Consensus 104 ~~sapa---~~~~p~~~i~-~~dv~~~~~G~~~~~R~V~~~i~~~~~~~~~Lv~get~~~~G~WsSyP-PH~Hd~~~~~~ 178 (261)
T PF04962_consen 104 VCSAPA---HRDYPPRLIT-PEDVPVEIRGAGNNSRTVRNIIDPNVPPASRLVVGETITPGGNWSSYP-PHKHDRRMEPD 178 (261)
T ss_dssp EEEEE----SS----EEE--TTTSEEEEESSGGGTEEEEEEESTTT---SS-EEEEEEETTT-EES-S-EEE-CCEEEES
T ss_pred EEcccc---CCCCCCEEEC-HHHCCeEEecCCCCcEEEEEeeCCCCcccceEEEEEEEeCCCccCCcC-CccCCCcCCCc
Confidence 875443 4433555555 44565555432 22355566644 433444444455577764 55 478877
Q ss_pred ----ceEEEEE----EeeEE---EEe---CCEEEEccCCcEEEeCCC
Q 022278 242 ----QHGLLLL----EGQGI---YRL---GDSWYPVQAGDVLWMAPF 274 (300)
Q Consensus 242 ----eh~~~iL----~G~G~---~~~---~g~~~~v~~GD~i~~~~~ 274 (300)
||+||.. +|-|. |+. .++-+.|+-||++.+|+|
T Consensus 179 e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~V~~~d~V~iP~g 225 (261)
T PF04962_consen 179 ETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYVVRNGDAVLIPSG 225 (261)
T ss_dssp EECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEEEETTEEEEESTT
T ss_pred cccceeEEEEEccCcccEEEEEEECCCCCCcEEEEEECCCEEEeCCC
Confidence 7787763 25554 332 257889999999999999
No 38
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.72 E-value=6.4e-08 Score=84.31 Aligned_cols=69 Identities=25% Similarity=0.373 Sum_probs=59.2
Q ss_pred cCCCcCCCCCCCceEEEEEEECEEEEEEc-CC--cEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccc
Q 022278 112 QENARSALPPHDVERFIFVVQGSAMLTNA-SG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYAS 180 (300)
Q Consensus 112 ~PG~~~~~~~h~gEEf~yVLeG~v~l~v~-gg--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~ 180 (300)
-||.+...|.|++||++|+|+|++.|.+. +| +...|++||++.+|+|++|+....+.+..|+|++.-.+
T Consensus 42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPE 113 (177)
T ss_pred cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCC
Confidence 56767777889999999999999999982 34 58999999999999999999988788899999776443
No 39
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.69 E-value=1.7e-07 Score=80.23 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=64.9
Q ss_pred CCcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEE
Q 022278 101 GSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF 174 (300)
Q Consensus 101 g~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v 174 (300)
+..+..-.+++.||.+...+ ++...|.-+|++|+.++++ +++.+.+++||++|+|+|..|++.| +.+..++=|
T Consensus 60 ~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~-~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEV 135 (151)
T PF01050_consen 60 GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL-DDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEV 135 (151)
T ss_pred cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE-CCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEEE
Confidence 55788899999999998877 4567899999999999999 9999999999999999999999999 456677666
No 40
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.68 E-value=2.1e-07 Score=86.58 Aligned_cols=184 Identities=14% Similarity=0.186 Sum_probs=126.8
Q ss_pred EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccc-------
Q 022278 108 LANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYAS------- 180 (300)
Q Consensus 108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~------- 180 (300)
+--|.||...+.|.|..--+-||+||+...++.+|+...+++||++.-|++.-|---|...--++|..--=.|
T Consensus 96 lQlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdGer~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDiplv~~l~~ 175 (351)
T COG3435 96 LQLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDGERTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDIPLVNSLGA 175 (351)
T ss_pred hheecCcccCCcccccccceEEEEeccceeEeecCceeeccCCCEEEccCceeccCCCCCCCceEEEcccchHHHHhhcc
Confidence 4456899988899999999999999999877559999999999999999999997777333334444221111
Q ss_pred ------------c---CC-CCcc--eeeccCCC---C--------C----------------CcccCCceeEEEEeeCCC
Q 022278 181 ------------L---EN-HITE--QIVGSTDK---Q--------P----------------LLETPGEVFQLRKLLPQA 215 (300)
Q Consensus 181 ------------~---~g-~~p~--~~~~~~~d---~--------~----------------~~~~~g~~~~~~~l~p~~ 215 (300)
. ++ +-+. .-+..+++ - + ..+. ++..++-.-|..
T Consensus 176 gFfe~~~e~~q~v~~~~~d~~ar~~~~~rP~~~r~~~~~SPlf~Y~w~~t~eAL~~la~~e~~dp~--dG~~~ryvNP~T 253 (351)
T COG3435 176 GFFEEHPEEQQPVTRPEGDSLARYGPGMRPLRHRWGKPYSPLFNYAWDRTREALERLARLEEPDPF--DGYKMRYVNPVT 253 (351)
T ss_pred cccccCchhcCcccCCCCCchhhcCCCccccccCCCCCCCcccccccccHHHHHHHHHhccCCCCC--CcceEEEecCCC
Confidence 0 00 0000 00000111 0 1 1112 234555555654
Q ss_pred CCcce---EEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278 216 VPFDF---NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 292 (300)
Q Consensus 216 ~~~~~---~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 292 (300)
++.-| .--.--|.||-+. ..|+|...-+|.|.+|.|...+||+.+.-.+||++.+|+-..|.+.|. .++...++|
T Consensus 254 Gg~~mptI~a~mqlL~~Gf~~-~~~r~t~s~iy~V~eGsg~~~Ig~~rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 254 GGYAMPTIGAFMQLLPPGFHG-KAHRHTDSTIYHVVEGSGYTIIGGERFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred CCCcCchHHHHHHhcCCcccC-CceeccCCEEEEEEecceeEEECCEEeeccCCCEEEccCcceeecccC-CcceEEEec
Confidence 44321 1111124455554 568999999999999999999999999999999999999999999997 788999999
Q ss_pred eec
Q 022278 293 KDV 295 (300)
Q Consensus 293 kd~ 295 (300)
.|-
T Consensus 332 sD~ 334 (351)
T COG3435 332 SDR 334 (351)
T ss_pred CCc
Confidence 884
No 41
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.67 E-value=2.8e-07 Score=83.31 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=64.1
Q ss_pred eeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCC
Q 022278 205 VFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK 284 (300)
Q Consensus 205 ~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~ 284 (300)
.+....++..+.+..|..-.|+++- ++.+ .++.+.|..|||+|+..+++||+.+.++|||++|+|+|..|.|.+.++
T Consensus 142 ~v~~~d~~~~~d~s~m~aGf~~~~~-~sf~--wtl~~dEi~YVLEGe~~l~IdG~t~~l~pGDvlfIPkGs~~hf~tp~~ 218 (233)
T PRK15457 142 CVGLTDLVTGDDGSSMAAGFMQWEN-AFFP--WTLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPSS 218 (233)
T ss_pred cEEeeeeeccCCCCceeeEEEEEec-Cccc--eeccceEEEEEEEeEEEEEECCEEEEeCCCcEEEECCCCeEEecCCCC
Confidence 3344455544445666666777764 5554 467777899999999999999999999999999999999977766665
Q ss_pred ccEEEEEE
Q 022278 285 TRTRYLLY 292 (300)
Q Consensus 285 e~~~fi~~ 292 (300)
..+.|+.|
T Consensus 219 aRflyV~~ 226 (233)
T PRK15457 219 VRFLYVAW 226 (233)
T ss_pred eeEEEEEe
Confidence 56655554
No 42
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.65 E-value=9.2e-08 Score=76.96 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=46.0
Q ss_pred CCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 229 PGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 229 PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
|+-..+. |.|..-+..||++|+|.+.+||+.+.|+|||++|++|+.+|.+...++++++++.
T Consensus 12 ~~~~~~~-h~h~~~~i~~v~~G~~~~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~ 73 (136)
T PF02311_consen 12 PNFEFPP-HWHDFYEIIYVLSGEGTLHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYW 73 (136)
T ss_dssp TT-SEEE-ETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEE
T ss_pred CCCccCC-EECCCEEEEEEeCCEEEEEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEE
Confidence 3444443 6777778999999999999999999999999999999999999999977777554
No 43
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.65 E-value=4.1e-07 Score=80.68 Aligned_cols=76 Identities=11% Similarity=0.161 Sum_probs=62.3
Q ss_pred CCCCcEEEEEEEEcCCCc------CCCCCC---CceEEEEEEECEEEEEEcCCc-----EEEeccCcEEEeCCCCceEEe
Q 022278 99 AMGSHFVMYLANMQENAR------SALPPH---DVERFIFVVQGSAMLTNASGV-----SSKLMVDSYTYLPPNFAHSLR 164 (300)
Q Consensus 99 ~~g~~f~~~lv~l~PG~~------~~~~~h---~gEEf~yVLeG~v~l~v~gg~-----~~~L~~Gds~yfpa~~~H~~~ 164 (300)
..+..+..-+++|+||.. +..|-| +..|++|||+|+..+.+ +++ .+.+++||.+++|++..|++.
T Consensus 63 ~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l-~~~~G~~~~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 63 ETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLL-QDPEGEARWIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred CcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEE-ecCCCcEEEEEECCCCEEEECCCCcEEeE
Confidence 345678889999999985 333545 34599999999999998 543 689999999999999999999
Q ss_pred e--CCeEEEEEEE
Q 022278 165 A--EGSATLVVFE 175 (300)
Q Consensus 165 N--~~~a~vl~v~ 175 (300)
| +++.+++.+-
T Consensus 142 N~G~epl~fl~v~ 154 (191)
T PRK04190 142 NTGDEPLVFLACY 154 (191)
T ss_pred ECCCCCEEEEEEE
Confidence 9 6788888763
No 44
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.63 E-value=3.4e-07 Score=71.31 Aligned_cols=87 Identities=23% Similarity=0.284 Sum_probs=60.1
Q ss_pred CCcccCCceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCc
Q 022278 197 PLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP 276 (300)
Q Consensus 197 ~~~~~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~ 276 (300)
||++....++.++.|...+......++++.++||+.+|. |.|..-+.+|||+|.-.+ ++..| .+||+++.+++..
T Consensus 1 ~W~~~~~~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~-H~H~g~ee~~VLeG~~~d--~~~~~--~~G~~~~~p~g~~ 75 (91)
T PF12973_consen 1 PWQPGPRPGVSVKPLHRDEGETGERVSLLRLEPGASLPR-HRHPGGEEILVLEGELSD--GDGRY--GAGDWLRLPPGSS 75 (91)
T ss_dssp --EE-CSTTEEEEEEEECSSSTTEEEEEEEE-TTEEEEE-EEESS-EEEEEEECEEEE--TTCEE--ETTEEEEE-TTEE
T ss_pred CCccCCCCCEEEEEeccCCCcccCEEEEEEECCCCCcCc-cCCCCcEEEEEEEEEEEE--CCccC--CCCeEEEeCCCCc
Confidence 345532334556666655444567788999999999996 677777788999998875 44444 9999999999999
Q ss_pred eeEEecCCccEEEE
Q 022278 277 QWYAALGKTRTRYL 290 (300)
Q Consensus 277 H~~~n~G~e~~~fi 290 (300)
|.... ++.+..+
T Consensus 76 h~~~s--~~gc~~~ 87 (91)
T PF12973_consen 76 HTPRS--DEGCLIL 87 (91)
T ss_dssp EEEEE--SSCEEEE
T ss_pred cccCc--CCCEEEE
Confidence 99995 5555443
No 45
>PLN00212 glutelin; Provisional
Probab=98.62 E-value=1.7e-07 Score=93.76 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=73.5
Q ss_pred EEEEeeCCCC---CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC--C-----------------------
Q 022278 207 QLRKLLPQAV---PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG--D----------------------- 258 (300)
Q Consensus 207 ~~~~l~p~~~---~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~--g----------------------- 258 (300)
.++.+.+.+. .....+.+.+++|++-+.. |+|.-.+.+||++|+|++-+= |
T Consensus 64 ~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP-~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~ 142 (493)
T PLN00212 64 VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLP-RYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKF 142 (493)
T ss_pred eeeecCCCChhhcccceEEEEEEecCCcccCc-cccCCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccccccccc
Confidence 3455555332 2356788999999999986 667888899999999988652 1
Q ss_pred -----EEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeecCC
Q 022278 259 -----SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR 297 (300)
Q Consensus 259 -----~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~nr 297 (300)
+.+.+++||+|.+|+|+.||++|.|+++++.|+.-|+|-
T Consensus 143 ~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n 186 (493)
T PLN00212 143 RDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINN 186 (493)
T ss_pred ccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccc
Confidence 347999999999999999999999999999999988875
No 46
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.62 E-value=3.2e-07 Score=75.40 Aligned_cols=101 Identities=18% Similarity=0.209 Sum_probs=76.9
Q ss_pred eeeccCCCCCCcc--cCCceeEE-EEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe--CCEEEE
Q 022278 188 QIVGSTDKQPLLE--TPGEVFQL-RKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GDSWYP 262 (300)
Q Consensus 188 ~~~~~~~d~~~~~--~~g~~~~~-~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~--~g~~~~ 262 (300)
|+|.+.+|+..++ +.+++... |.|+.+| +..|.|+..++.||..+..+-.|..| ..|+++|+|.+.+ +|+.++
T Consensus 1 MiVR~l~di~~Tdr~V~~~~w~SrRlll~~D-gmGFS~h~T~i~aGtet~~~YknHlE-Avyci~G~Gev~~~~~G~~~~ 78 (126)
T PF06339_consen 1 MIVRSLDDIRGTDRDVDAENWESRRLLLKDD-GMGFSFHETTIYAGTETHIHYKNHLE-AVYCIEGEGEVEDLDTGEVHP 78 (126)
T ss_pred CeEEEHHHhcCCceeEEcCCceEEEEEEccC-CCCEEEEEEEEeCCCeeEEEecCceE-EEEEEeceEEEEEccCCcEEE
Confidence 4677777776664 33334344 4455444 66777889999999997654444444 7899999999986 899999
Q ss_pred ccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278 263 VQAGDVLWMAPFVPQWYAALGKTRTRYLLY 292 (300)
Q Consensus 263 v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 292 (300)
++||.+-.......|.+.+.. +++.+|-
T Consensus 79 i~pGt~YaLd~hD~H~lra~~--dm~~vCV 106 (126)
T PF06339_consen 79 IKPGTMYALDKHDRHYLRAKT--DMRLVCV 106 (126)
T ss_pred cCCCeEEecCCCccEEEEecC--CEEEEEE
Confidence 999999999999999999965 8887773
No 47
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.62 E-value=3.7e-07 Score=82.48 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=63.9
Q ss_pred EecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEE
Q 022278 95 LITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF 174 (300)
Q Consensus 95 L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v 174 (300)
+.....+..|....+++.. .+.+ ...+.+|+.||++|++++++ +|+++.+++||.+|+|+|..|.|.+...+|++.+
T Consensus 148 ~~~~~d~s~m~aGf~~~~~-~sf~-wtl~~dEi~YVLEGe~~l~I-dG~t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV 224 (233)
T PRK15457 148 LVTGDDGSSMAAGFMQWEN-AFFP-WTLNYDEIDMVLEGELHVRH-EGETMIAKAGDVMFIPKGSSIEFGTPSSVRFLYV 224 (233)
T ss_pred eeccCCCCceeeEEEEEec-Cccc-eeccceEEEEEEEeEEEEEE-CCEEEEeCCCcEEEECCCCeEEecCCCCeeEEEE
Confidence 4445566788888888874 2222 25788999999999999999 9999999999999999999988877668888776
Q ss_pred E
Q 022278 175 E 175 (300)
Q Consensus 175 ~ 175 (300)
.
T Consensus 225 ~ 225 (233)
T PRK15457 225 A 225 (233)
T ss_pred E
Confidence 4
No 48
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.60 E-value=4.1e-07 Score=70.53 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=56.1
Q ss_pred cEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEE
Q 022278 103 HFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF 174 (300)
Q Consensus 103 ~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v 174 (300)
.|..-.++|+||+.-+.- ...-.-.+||++|.+++++ .+.++.+++|+++++|+|-.-.++| +++|+++.+
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti-~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI-HETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE-TTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE-cCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 677789999999876443 6777888999999999999 9999999999999999999999999 789998875
No 49
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=98.58 E-value=2e-07 Score=83.02 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=56.0
Q ss_pred EEEEecCCcccCcceeeccc---eEEEEEEeeEEEEeCC-----EEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 223 HIMDFQPGDFLNVKEVHYNQ---HGLLLLEGQGIYRLGD-----SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 223 ~~~tl~PG~~~p~~~~H~~e---h~~~iL~G~G~~~~~g-----~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
....+.||+..-. |-|+.. |.+|+|+|+|.|.+.. .+..+++||+||+|++--|...|+|++||+|+.
T Consensus 83 ~e~~~t~G~~~~~-H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~ 158 (209)
T COG2140 83 AEVFKTPGAMREL-HYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLN 158 (209)
T ss_pred eEEEecCCccccc-ccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEE
Confidence 3566778876544 444322 5899999999999876 678999999999999999999999999999874
No 50
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.56 E-value=3.7e-07 Score=71.13 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=59.7
Q ss_pred ceEEEEecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeE
Q 022278 90 TLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSA 169 (300)
Q Consensus 90 ~~~~~L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a 169 (300)
.....|-...........++.++||+..+.|.|.+-|.+|||+|+.. . ++. ...+||+++.|++..|....++.+
T Consensus 10 v~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~--d-~~~--~~~~G~~~~~p~g~~h~~~s~~gc 84 (91)
T PF12973_consen 10 VSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEEILVLEGELS--D-GDG--RYGAGDWLRLPPGSSHTPRSDEGC 84 (91)
T ss_dssp EEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEE--E-TTC--EEETTEEEEE-TTEEEEEEESSCE
T ss_pred EEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEE--E-CCc--cCCCCeEEEeCCCCccccCcCCCE
Confidence 44455554443446778899999999998888999999999999988 3 444 459999999999999999987777
Q ss_pred EEEE
Q 022278 170 TLVV 173 (300)
Q Consensus 170 ~vl~ 173 (300)
.+++
T Consensus 85 ~~~v 88 (91)
T PF12973_consen 85 LILV 88 (91)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 51
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=98.48 E-value=5.1e-07 Score=68.00 Aligned_cols=64 Identities=14% Similarity=0.281 Sum_probs=50.5
Q ss_pred CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCC
Q 022278 102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG 167 (300)
Q Consensus 102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~ 167 (300)
..+...+.+..||...- . .+.+|++|||+|+++++..+|+++++++||+++||+|..-.|.-.+
T Consensus 5 g~~~~g~w~~~pg~~~~-~-~~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v~~ 68 (74)
T PF05899_consen 5 GVFSAGVWECTPGKFPW-P-YPEDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEVRE 68 (74)
T ss_dssp TSEEEEEEEEECEEEEE-E-ESSEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEEEE
T ss_pred CCEEEEEEEECCceeEe-e-CCCCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEECe
Confidence 35677778888875332 2 2239999999999999987889999999999999999998887533
No 52
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.34 E-value=1.6e-06 Score=80.71 Aligned_cols=72 Identities=17% Similarity=0.315 Sum_probs=58.2
Q ss_pred eEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278 220 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 292 (300)
Q Consensus 220 ~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 292 (300)
+.+.+-...+...++. |.|.+-+.+|+++|+|.+.+||+.+.+++||++||+||..|++...++.....+.|
T Consensus 18 ~~~~~~~~~~~~~~~~-H~H~~~ei~~i~~G~~~~~i~~~~~~l~~g~~~~I~p~~~H~~~~~~~~~~~~~~~ 89 (290)
T PRK13501 18 MPVAVTNRYPQETFVE-HTHQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYESVHDLVLDNIIY 89 (290)
T ss_pred CceEEecCCCCCCCcc-ccccceeEEEEecCceEEEECCeeeeecCCeEEEEcCCCcccccccCCeEEEEEEe
Confidence 3333444456666764 78888899999999999999999999999999999999999998876655555554
No 53
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=98.29 E-value=3.1e-06 Score=72.25 Aligned_cols=79 Identities=8% Similarity=0.214 Sum_probs=60.9
Q ss_pred EecCCCCCcEEEEEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278 95 LITPAMGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVV 173 (300)
Q Consensus 95 L~sp~~g~~f~~~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~ 173 (300)
+++...+..|..-.++|++. ... .-..+|..|||||++++.+ +|++++.++||.+|||.|..-.|+....||++.
T Consensus 68 v~~~~e~~~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~-~G~~~~A~~GDvi~iPkGs~I~fst~~~a~~~Y 143 (152)
T PF06249_consen 68 VFSSDESPRLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI-DGQTVTAKPGDVIFIPKGSTITFSTPDYARFFY 143 (152)
T ss_dssp EE-GGGT-SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE-TTEEEEEETT-EEEE-TT-EEEEEEEEEEEEEE
T ss_pred eccCCCCCceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE-CCEEEEEcCCcEEEECCCCEEEEecCCCEEEEE
Confidence 55544566788888888863 223 5678999999999999999 999999999999999999999998777899998
Q ss_pred EEee
Q 022278 174 FERR 177 (300)
Q Consensus 174 v~~~ 177 (300)
|..|
T Consensus 144 v~yP 147 (152)
T PF06249_consen 144 VTYP 147 (152)
T ss_dssp EEES
T ss_pred EECC
Confidence 8543
No 54
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=98.24 E-value=0.00016 Score=67.50 Aligned_cols=162 Identities=9% Similarity=0.114 Sum_probs=110.9
Q ss_pred CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCc-eEEee---CCeEEEEEEEeeccccCCCCcceeeccCCCC
Q 022278 121 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLRA---EGSATLVVFERRYASLENHITEQIVGSTDKQ 196 (300)
Q Consensus 121 ~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~-H~~~N---~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~ 196 (300)
....|-.+..|.|++++++ +|+++.|.+.|++|+|.|.+ -.+.. ..+|++.+.+.+ +...-|..++. .+|+
T Consensus 71 l~rrE~giV~lgG~~~V~v-dG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAP---A~~~~PtrlI~-~~d~ 145 (276)
T PRK00924 71 LERRELGIINIGGAGTVTV-DGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAP---AHTTYPTKKIT-IADA 145 (276)
T ss_pred cCCcEEEEEEccceEEEEE-CCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccc---cCCCCCCEEEC-HHHC
Confidence 4566778899999999999 99999999999999999977 55543 457999988544 44444555555 4455
Q ss_pred CCcccC-C---ceeEEEEee-CCCCC-cceEEEEEEecCCc---ccCcceeec-cceEE-EE--EEeeEEEEeCC---EE
Q 022278 197 PLLETP-G---EVFQLRKLL-PQAVP-FDFNIHIMDFQPGD---FLNVKEVHY-NQHGL-LL--LEGQGIYRLGD---SW 260 (300)
Q Consensus 197 ~~~~~~-g---~~~~~~~l~-p~~~~-~~~~~~~~tl~PG~---~~p~~~~H~-~eh~~-~i--L~G~G~~~~~g---~~ 260 (300)
+..... | ...+++.++ |+... -.+.|-...+.||+ +.|. |+|. ..|.| |. =+++-+++++| +.
T Consensus 146 ~~~~rG~~~~sN~R~I~~il~p~~~~s~qLlmG~tvltPGg~WSSyPP-HkHDrr~E~YlYf~l~~~qrV~h~mG~pdET 224 (276)
T PRK00924 146 SPVTLGDLETSNRRTINKYIHPDVLETCQLVMGLTELEPGSVWNTMPC-HTHDRRMEVYFYFDMPEDARVFHFMGEPQET 224 (276)
T ss_pred CeEeccCCCCCCcEEEEEecCCCCCccccEEEEEEEEcCCCCCCCCCC-ccCCCCcceEEEEEcCCCceEEecCCCccce
Confidence 444432 1 233555665 65543 45777777789999 5675 6776 33443 32 25566777777 34
Q ss_pred --EEccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278 261 --YPVQAGDVLWMAPFVPQWYAALGKTRTRYL 290 (300)
Q Consensus 261 --~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi 290 (300)
.-|+-+|++..|+---|+=.. .....||
T Consensus 225 rh~~v~n~~aVisP~wsih~g~g--t~~y~fi 254 (276)
T PRK00924 225 RHIVVHNEQAVISPSWSIHSGVG--TSNYTFI 254 (276)
T ss_pred eeEEEECCCEEECCCcceecCcC--ccccEEE
Confidence 778999999999998886433 3344444
No 55
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.23 E-value=8e-06 Score=68.71 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=58.8
Q ss_pred CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE-cC-C-------cEEE--eccCcEEEeCCCCceEEeeC--Ce
Q 022278 102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-AS-G-------VSSK--LMVDSYTYLPPNFAHSLRAE--GS 168 (300)
Q Consensus 102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~g-g-------~~~~--L~~Gds~yfpa~~~H~~~N~--~~ 168 (300)
..+...+++|.||+...+|-|...+++||++|++.+.+ .. + ...+ +++||.+++|+|..|.+.|. .+
T Consensus 32 ~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~ 111 (144)
T PF00190_consen 32 NGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDE 111 (144)
T ss_dssp TTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSS
T ss_pred cceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCC
Confidence 46777788889999988886699999999999999765 22 2 2345 99999999999999999994 56
Q ss_pred EEEEEEEeecc
Q 022278 169 ATLVVFERRYA 179 (300)
Q Consensus 169 a~vl~v~~~y~ 179 (300)
+..+.+-.-..
T Consensus 112 ~~~~~~f~~~~ 122 (144)
T PF00190_consen 112 ALVLIIFDTNN 122 (144)
T ss_dssp EEEEEEEEESS
T ss_pred CEEEEEEECCC
Confidence 55555534333
No 56
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.22 E-value=4.5e-06 Score=67.00 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=45.4
Q ss_pred CCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee--CCeEEEEEEEe
Q 022278 118 ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFER 176 (300)
Q Consensus 118 ~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N--~~~a~vl~v~~ 176 (300)
..|.|+.=+++||++|+.++.+ +++++.+++||.++++|+..|++.. +++.+..|+.-
T Consensus 17 ~~h~h~~~~i~~v~~G~~~~~~-~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 17 PPHWHDFYEIIYVLSGEGTLHI-DGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp EEETT-SEEEEEEEEE-EEEEE-TTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred CCEECCCEEEEEEeCCEEEEEE-CCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 4457899999999999999999 9999999999999999999999996 34788777743
No 57
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=98.21 E-value=8.4e-06 Score=69.66 Aligned_cols=86 Identities=12% Similarity=0.145 Sum_probs=63.3
Q ss_pred ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278 204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG 283 (300)
Q Consensus 204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G 283 (300)
..+.++.++..+.+..+..-.|++++. .++ -+=...|..|||+|+-.+.++|+.+..+|||++|+|.|..=.|...+
T Consensus 61 ~~~~~~dv~~~~e~~~l~~Gf~~le~~-~f~--wtl~YDEi~~VlEG~L~i~~~G~~~~A~~GDvi~iPkGs~I~fst~~ 137 (152)
T PF06249_consen 61 DKVYIKDVFSSDESPRLSAGFMELEKT-SFP--WTLTYDEIKYVLEGTLEISIDGQTVTAKPGDVIFIPKGSTITFSTPD 137 (152)
T ss_dssp --EEE-EEE-GGGT-SSEEEEEEEEEE-EEE--EE-SSEEEEEEEEEEEEEEETTEEEEEETT-EEEE-TT-EEEEEEEE
T ss_pred ccEEEEEeccCCCCCceeeEEEEEeCC-Ccc--EEeecceEEEEEEeEEEEEECCEEEEEcCCcEEEECCCCEEEEecCC
Confidence 556777777655566677778888873 444 35566779999999999999999999999999999999998998877
Q ss_pred CccEEEEEE
Q 022278 284 KTRTRYLLY 292 (300)
Q Consensus 284 ~e~~~fi~~ 292 (300)
...+-|..|
T Consensus 138 ~a~~~Yv~y 146 (152)
T PF06249_consen 138 YARFFYVTY 146 (152)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEEC
Confidence 777777766
No 58
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.16 E-value=4.4e-06 Score=79.97 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=65.8
Q ss_pred ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEE-EeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeec
Q 022278 219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY-RLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV 295 (300)
Q Consensus 219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~-~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~ 295 (300)
.+...+-.|.||...+. |.|...-..||++|+|.| .+||+..+.++||++.+|++..|...|.|++++.+|-+-|.
T Consensus 80 tl~a~~q~l~pGe~~~~-HRht~sAl~~vveG~G~~t~V~g~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~lD~ 156 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPS-HRHTQSALRFIVEGKGAFTAVDGERTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGLDI 156 (335)
T ss_pred hHHhhhEEeCCCCCCCc-cccccceEEEEEEcCceEEEECCEEEeeeCCCEEEeCCCeeEecccCCCCcEEEEecCCH
Confidence 34445667889999986 788888899999999975 56999999999999999999999999999999888777663
No 59
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=98.16 E-value=2.8e-05 Score=69.46 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=61.9
Q ss_pred ceEEEEecCCC-CCcEEEEEEEEcCCCcCCCC-CCCceE--EEEEEECEEEEEEc--CC--cEEEeccCcEEEeCCCCce
Q 022278 90 TLGAYLITPAM-GSHFVMYLANMQENARSALP-PHDVER--FIFVVQGSAMLTNA--SG--VSSKLMVDSYTYLPPNFAH 161 (300)
Q Consensus 90 ~~~~~L~sp~~-g~~f~~~lv~l~PG~~~~~~-~h~gEE--f~yVLeG~v~l~v~--gg--~~~~L~~Gds~yfpa~~~H 161 (300)
...++-.++.. |+ .--++.+.||+..+.| +...+| ..|||+|+..+.+. .| .+..+++||.+|+|++-.|
T Consensus 67 g~L~~~~t~~~pGs--~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH 144 (209)
T COG2140 67 GDLRLDVTRIFPGS--AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGH 144 (209)
T ss_pred CeEEEEeeccCCCc--cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcce
Confidence 45555555443 44 3446778999998888 333455 99999999999882 12 4678899999999999999
Q ss_pred EEee--CCeEEEEEE
Q 022278 162 SLRA--EGSATLVVF 174 (300)
Q Consensus 162 ~~~N--~~~a~vl~v 174 (300)
+..| +++..++.+
T Consensus 145 ~t~N~Gd~pLvf~~v 159 (209)
T COG2140 145 YTINTGDEPLVFLNV 159 (209)
T ss_pred EeecCCCCCEEEEEE
Confidence 9999 677766665
No 60
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.11 E-value=1.6e-05 Score=71.76 Aligned_cols=91 Identities=13% Similarity=0.034 Sum_probs=66.2
Q ss_pred CCCcccCCceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCC
Q 022278 196 QPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFV 275 (300)
Q Consensus 196 ~~~~~~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~ 275 (300)
++|+...+ ++....|...+.. ..++.+.++||+.+|. |+|.-.|..+||+|. +.+++. ...+||+++.+++.
T Consensus 106 ~~W~~~~~-gv~~~~L~~~~~~--~~v~Ll~i~pG~~~p~-H~H~G~E~tlVLeG~--f~de~g--~y~~Gd~i~~p~~~ 177 (215)
T TIGR02451 106 WRWRGPGG-RVSRVTLPIDDGN--ARVRLLYIEAGQSIPQ-HTHKGFELTLVLHGA--FSDETG--VYGVGDFEEADGSV 177 (215)
T ss_pred CCccCCCC-CeEEEeccCCCCC--cEEEEEEECCCCccCC-CcCCCcEEEEEEEEE--EEcCCC--ccCCCeEEECCCCC
Confidence 56776543 3232223322312 3578999999999997 566666688999999 444444 56999999999999
Q ss_pred ceeEEecCCccEEEEEEee
Q 022278 276 PQWYAALGKTRTRYLLYKD 294 (300)
Q Consensus 276 ~H~~~n~G~e~~~fi~~kd 294 (300)
.|+..+.+++++..+.--|
T Consensus 178 ~H~p~a~~~~~Cicl~v~d 196 (215)
T TIGR02451 178 QHQPRTVSGGDCLCLAVLD 196 (215)
T ss_pred CcCcccCCCCCeEEEEEec
Confidence 9999999999888776544
No 61
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.05 E-value=1.6e-05 Score=75.02 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=54.1
Q ss_pred cCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEe
Q 022278 228 QPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK 293 (300)
Q Consensus 228 ~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k 293 (300)
-|....+. |.|..-+.+||++|.|.+.+||+.+.+++||+++++|+..|.+....+.....++|.
T Consensus 56 ~~~~~~~~-H~H~~~el~~v~~G~g~~~v~~~~~~l~~Gdl~~I~~~~~H~~~~~~~~~~~~i~~~ 120 (312)
T PRK13500 56 YPQDVFAE-HTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVLQNIIYC 120 (312)
T ss_pred CCCCCCCc-cccceEEEEEEEcCeEEEEECCEEEeecCCeEEEECCCCeecccccCCceEEEEEEc
Confidence 35555554 678777899999999999999999999999999999999999998776555555553
No 62
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.05 E-value=8.5e-05 Score=57.59 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=59.0
Q ss_pred ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
.++.-++.|.||+.=+...+..+.-.+||++|...+++++....+.+||..++|+|-.=+++|.|+++.+-+.
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence 6777899999999988877778888899999999999999999999999999999999999999999887654
No 63
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.01 E-value=6.2e-05 Score=63.87 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=69.9
Q ss_pred ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278 204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG 283 (300)
Q Consensus 204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G 283 (300)
..+....|+..+.+.-+..-.+..+| ..+|. +-..-++-|||||+..++++|+....+|||+||||-|-.=-|.-+|
T Consensus 84 ~~V~~tdLvt~~~g~~l~aG~m~~~~-~tf~w--tl~yDe~d~VlEGrL~V~~~g~tv~a~aGDvifiPKgssIefst~g 160 (176)
T COG4766 84 DCVYTTDLVTEQEGSRLGAGLMEMKN-TTFPW--TLNYDEIDYVLEGRLHVRIDGRTVIAGAGDVIFIPKGSSIEFSTTG 160 (176)
T ss_pred CeEEeeceeecccCCccccceeeecc-ccCcc--eecccceeEEEeeeEEEEEcCCeEecCCCcEEEecCCCeEEEeccc
Confidence 44566667776667667777788888 77663 5555569999999999999999999999999999999999999998
Q ss_pred CccEEEEEE
Q 022278 284 KTRTRYLLY 292 (300)
Q Consensus 284 ~e~~~fi~~ 292 (300)
.-.+-|+.|
T Consensus 161 ea~flyvty 169 (176)
T COG4766 161 EAKFLYVTY 169 (176)
T ss_pred eEEEEEEEc
Confidence 866666665
No 64
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.00 E-value=3.2e-05 Score=71.34 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=48.2
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEec
Q 022278 222 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL 282 (300)
Q Consensus 222 ~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~ 282 (300)
++++...........|.|..-+.+||++|.+.+.+||+.+.+++||++|++||+.|.....
T Consensus 24 ~~~~~~~~~~~~~~~H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 24 FHVFIYNKTESVSGLHQHDYYEFTLVLTGRYYQEINGKRVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred EEEEEEehhhcCCCCcccccEEEEEEEeceEEEEECCEEEEECCCcEEEeCCCCccceeee
Confidence 3444443333332347888888999999999999999999999999999999999977544
No 65
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.99 E-value=4.1e-05 Score=68.58 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=65.7
Q ss_pred cceEEEEEEecCCcccCcceee-ccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEeec
Q 022278 218 FDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV 295 (300)
Q Consensus 218 ~~~~~~~~tl~PG~~~p~~~~H-~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~ 295 (300)
..|.=-++++.|+|-.-..+.. ..|-.+||++|+..+.++|+.+.+++|++.|+|||..|.+.|..+++.+|-.||-.
T Consensus 59 ~tF~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk~ 137 (264)
T COG3257 59 ATFVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRKR 137 (264)
T ss_pred hhhhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEEeec
Confidence 3455568899898854444443 45566899999999999999999999999999999999999999999999998753
No 66
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.96 E-value=4.7e-05 Score=65.58 Aligned_cols=55 Identities=13% Similarity=0.328 Sum_probs=42.5
Q ss_pred ceeeccceEEEEEEeeEEEEe---CCEEE--EccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278 236 KEVHYNQHGLLLLEGQGIYRL---GDSWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYL 290 (300)
Q Consensus 236 ~~~H~~eh~~~iL~G~G~~~~---~g~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi 290 (300)
-|+|..+|.-||++|+|.+.+ +++|. .+++||.|.+|+|..|||.-.-+..++-|
T Consensus 87 EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~ai 146 (157)
T PF03079_consen 87 EHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAI 146 (157)
T ss_dssp -EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEE
T ss_pred eEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEE
Confidence 589999999999999999987 78887 89999999999999999996544444433
No 67
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.95 E-value=1.1e-05 Score=74.11 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=51.9
Q ss_pred CCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278 229 PGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 292 (300)
Q Consensus 229 PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 292 (300)
|....+. |+|..-+.+||++|.|.+.+||+.+++++||++|++|+.+|.+.+..+..+.+++|
T Consensus 24 ~~~~~~~-H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~~~~~~~~~ 86 (278)
T PRK13503 24 PQAAFPE-HHHDFHEIVIVEHGTGIHVFNGQPYTLSGGTVCFVRDHDRHLYEHTDNLCLTNVLY 86 (278)
T ss_pred ccccccc-cccCceeEEEEecCceeeEecCCcccccCCcEEEECCCccchhhhccCceEEEEee
Confidence 4445554 68888899999999999999999999999999999999999988775444444444
No 68
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.94 E-value=3.3e-05 Score=71.26 Aligned_cols=65 Identities=17% Similarity=0.311 Sum_probs=52.5
Q ss_pred EecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 226 DFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 226 tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
...|....+. |.|..-+.+|+++|+|.+.+||+.+.+++||+++++|+.+|.+...++....+++
T Consensus 24 ~~~~~~~~~~-H~h~~~~l~~v~~G~~~~~i~~~~~~l~~g~l~li~~~~~H~~~~~~~~~~~~~~ 88 (282)
T PRK13502 24 DRYPQDVFAE-HTHEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTSVNDLVLQNII 88 (282)
T ss_pred cCCCCCCCCc-cccceEEEEEEecCcEEEEECCEEEeecCCcEEEECCCCcccccccCCceEEEEE
Confidence 3345554554 6777778999999999999999999999999999999999999876654434443
No 69
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.0018 Score=58.77 Aligned_cols=170 Identities=18% Similarity=0.263 Sum_probs=113.5
Q ss_pred EEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEE-Ee---------ccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278 104 FVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSS-KL---------MVDSYTYLPPNFAHSLRAEGSATLVV 173 (300)
Q Consensus 104 f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~-~L---------~~Gds~yfpa~~~H~~~N~~~a~vl~ 173 (300)
...-+.+|.+|.+......+.|..+.+++|++++.. +|+.+ .+ ++-|++|+|++...++....++++-+
T Consensus 29 VGF~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~-~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~~vAv 107 (270)
T COG3718 29 VGFRLLRLAAGESATEETGDRERCLVLVTGKATVSA-HGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDLEVAV 107 (270)
T ss_pred EEEEEEEccCCCcccccCCCceEEEEEEeeeEEEee-ccchHhhcccccccccCCCCCeEEecCCceEEEEeecceEEEE
Confidence 344588899998877777888999999999999997 66543 33 36699999999999999877777666
Q ss_pred EEeeccccCCCCcceeeccCCCCCCcc-cCC-ceeEEEEeeCCCC-Cc--ceEEEEEEecCCccc--Ccceeec------
Q 022278 174 FERRYASLENHITEQIVGSTDKQPLLE-TPG-EVFQLRKLLPQAV-PF--DFNIHIMDFQPGDFL--NVKEVHY------ 240 (300)
Q Consensus 174 v~~~y~~~~g~~p~~~~~~~~d~~~~~-~~g-~~~~~~~l~p~~~-~~--~~~~~~~tl~PG~~~--p~~~~H~------ 240 (300)
- +.|..|..|..+++..+. +... -.| ....+..++|++. .. ...+-++| ||+.. -..|.|.
T Consensus 108 C---~AP~~g~~~~~~i~p~~~-~~e~RGkG~NtR~VhNIlp~~~~~AdsLLVvEV~T--p~Gn~SSYPPHKHD~d~~p~ 181 (270)
T COG3718 108 C---SAPGKGGLPTKLIKPEDN-GVEHRGKGRNTRYVHNILPEDAPVADSLLVVEVIT--PGGNWSSYPPHKHDEDNLPH 181 (270)
T ss_pred E---eCCCCCCcceEEeccccC-CceeeccccceeeEEccCCCCCccccceEEEEEEc--CCCCcCCCCCCcccccCCcc
Confidence 5 566677678888875433 3222 233 3323444667654 33 35555555 77752 1134553
Q ss_pred ---cceEEEEE----Ee---eEEEEeCC---EEEEccCCcEEEeCCC-----CceeEE
Q 022278 241 ---NQHGLLLL----EG---QGIYRLGD---SWYPVQAGDVLWMAPF-----VPQWYA 280 (300)
Q Consensus 241 ---~eh~~~iL----~G---~G~~~~~g---~~~~v~~GD~i~~~~~-----~~H~~~ 280 (300)
-||+||-- +| +=+|++|+ +..-|.-||++.+|-| .+|+|.
T Consensus 182 Es~LEEtYYHrlnP~QGF~fQRVYTddrsLDEtmaV~~~dvvlVP~GYHPv~ap~GYd 239 (270)
T COG3718 182 ESYLEETYYHRLNPPQGFAFQRVYTDDRSLDETMAVENGDVVLVPKGYHPVGAPHGYD 239 (270)
T ss_pred chhhhhhhhhccCccccceEEEEEcCCCcccceeeeecCCEEEecCCcCccccCCccc
Confidence 34566653 23 33677774 6788999999999765 556543
No 70
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=97.89 E-value=3.4e-05 Score=69.67 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=56.0
Q ss_pred EEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC--CeEEEEEE
Q 022278 104 FVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE--GSATLVVF 174 (300)
Q Consensus 104 f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~--~~a~vl~v 174 (300)
....++.++||+..+.|.|.|.|+.+||+|+.. - + .-.+.+||++..|++..|+..+. +++..+.+
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~--d-e--~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v 194 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS--D-E--TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAV 194 (215)
T ss_pred cEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE--c-C--CCccCCCeEEECCCCCCcCcccCCCCCeEEEEE
Confidence 456899999999999999999999999999954 2 3 33689999999999999999983 55887777
No 71
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.88 E-value=8.4e-05 Score=63.01 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=44.9
Q ss_pred EcCCCcCCCCCCCceEEEEEEECEEEEEE-cCC--cEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEee
Q 022278 111 MQENARSALPPHDVERFIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR 177 (300)
Q Consensus 111 l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~gg--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~ 177 (300)
=.|+.++..|-.++|||+|-++|.+.|.+ ++| +...+++||.++.|++++|+-.--+.+.-|++++.
T Consensus 40 GGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~tiGLViEr~ 109 (151)
T PF06052_consen 40 GGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPADTIGLVIERK 109 (151)
T ss_dssp ESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-TT-EEEEEEE-
T ss_pred cCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCCCcEEEEEEec
Confidence 46777777778899999999999999987 334 45799999999999999999775556677777766
No 72
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=97.86 E-value=0.00015 Score=63.79 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=47.3
Q ss_pred eEEEEEEecCCccc--------Cccee----eccceEEEEEEeeEEEEeC---C------EEEEccCCcEEEeCCCCcee
Q 022278 220 FNIHIMDFQPGDFL--------NVKEV----HYNQHGLLLLEGQGIYRLG---D------SWYPVQAGDVLWMAPFVPQW 278 (300)
Q Consensus 220 ~~~~~~tl~PG~~~--------p~~~~----H~~eh~~~iL~G~G~~~~~---g------~~~~v~~GD~i~~~~~~~H~ 278 (300)
..+-+..+.||--- ++|.. -...|.|++|+|+|.+.+. + ...++++||+++|||+--|-
T Consensus 50 L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~ 129 (182)
T PF06560_consen 50 LRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHR 129 (182)
T ss_dssp EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEE
T ss_pred EEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEE
Confidence 56667777776421 11111 1245899999999999874 3 24789999999999999999
Q ss_pred EEecCCccEEEEEE
Q 022278 279 YAALGKTRTRYLLY 292 (300)
Q Consensus 279 ~~n~G~e~~~fi~~ 292 (300)
..|+|+++|+|...
T Consensus 130 tIN~g~~~L~~~~~ 143 (182)
T PF06560_consen 130 TINTGDEPLVFAAW 143 (182)
T ss_dssp EEE-SSS-EEEEEE
T ss_pred EEECCCCcEEEEEE
Confidence 99999999999764
No 73
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.80 E-value=0.00016 Score=61.35 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=64.4
Q ss_pred EecCCCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEE
Q 022278 95 LITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF 174 (300)
Q Consensus 95 L~sp~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v 174 (300)
|+.-..|..+..-++++.+ ...+ -.-..+|.-|||||++.+.+ +|++...++||.+|+|-|..-.+.-...|+++.|
T Consensus 91 Lvt~~~g~~l~aG~m~~~~-~tf~-wtl~yDe~d~VlEGrL~V~~-~g~tv~a~aGDvifiPKgssIefst~gea~flyv 167 (176)
T COG4766 91 LVTEQEGSRLGAGLMEMKN-TTFP-WTLNYDEIDYVLEGRLHVRI-DGRTVIAGAGDVIFIPKGSSIEFSTTGEAKFLYV 167 (176)
T ss_pred eeecccCCccccceeeecc-ccCc-ceecccceeEEEeeeEEEEE-cCCeEecCCCcEEEecCCCeEEEeccceEEEEEE
Confidence 5555666777777788877 2222 25678999999999999999 9999999999999999999998887666999998
Q ss_pred Ee
Q 022278 175 ER 176 (300)
Q Consensus 175 ~~ 176 (300)
..
T Consensus 168 ty 169 (176)
T COG4766 168 TY 169 (176)
T ss_pred Ec
Confidence 43
No 74
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=97.80 E-value=7.4e-05 Score=70.42 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=54.0
Q ss_pred eEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCcc
Q 022278 220 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR 286 (300)
Q Consensus 220 ~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~ 286 (300)
+.+.+..-.|-...+ .|-|..-|.+|+++|.+.+.+||+.+.+++||++|++++++|.+...++..
T Consensus 26 ~~~~~~~~~~~~m~~-~HwH~e~Ei~yv~~G~~~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 26 QRLEIEFRPPHIMPT-SHWHGQVEVNVPFDGDVEYLINNEKVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred ceeEEEeeCCCCCCC-CCccccEEEEEecCCcEEEEECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence 445555555555544 478888889999999999999999999999999999999999988766543
No 75
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.79 E-value=0.00011 Score=63.27 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=50.2
Q ss_pred EEEEEEe-cCCcccCcceeeccceEEEEEEeeEEEE--eCCE--EEEccCCcEEEeCCCCceeEEecCC
Q 022278 221 NIHIMDF-QPGDFLNVKEVHYNQHGLLLLEGQGIYR--LGDS--WYPVQAGDVLWMAPFVPQWYAALGK 284 (300)
Q Consensus 221 ~~~~~tl-~PG~~~p~~~~H~~eh~~~iL~G~G~~~--~~g~--~~~v~~GD~i~~~~~~~H~~~n~G~ 284 (300)
.+.++.+ -||....+ |.|..+|-+|+|+|...+. ++|+ ...+++||++++|+|++|...+.++
T Consensus 28 ~~~v~~vgGpn~R~d~-H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~ 95 (159)
T TIGR03037 28 EFMVTVVGGPNARTDF-HDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAG 95 (159)
T ss_pred cEEEEEeCCCCCCccc-ccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence 4455556 67777877 4577788999999999995 4553 8999999999999999998877543
No 76
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.00064 Score=64.53 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=75.6
Q ss_pred cEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEe----eccccCCCCccee-ec------cCCCCCCcccC----CceeE
Q 022278 143 VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER----RYASLENHITEQI-VG------STDKQPLLETP----GEVFQ 207 (300)
Q Consensus 143 ~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~----~y~~~~g~~p~~~-~~------~~~d~~~~~~~----g~~~~ 207 (300)
+...|+|||++|+||+++|.+... .++=+++ .|+...- |+.. ++ ..+.++....+ ..+..
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~~~G---~~lEvmqnSDntyR~yd~--~r~~d~~~lr~l~~~k~~~~~~~~~~~~~~~~~ 232 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAYLKG---LVLEVMQNSDNTYRVYDT--DRYDDIGELRELHLFKAKDVITLPTQPRKQGAE 232 (312)
T ss_pred cEEecCCCCEEEecCCCceeeccc---eEEEEEecCccEEEcccc--cccccchhHHhhhhccccchhhcCCcccccCce
Confidence 568999999999999999998742 1111111 1111111 1110 01 11112222221 12223
Q ss_pred EEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCce-eEEec
Q 022278 208 LRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ-WYAAL 282 (300)
Q Consensus 208 ~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H-~~~n~ 282 (300)
...++|.+ +|.+.++.+..=.... .+....++++++|+|+++-+|+.+++++|+.+|++++..- -+...
T Consensus 233 ~~~~v~~~---~F~l~~~~i~~~~~~~---~~~~~~il~v~eG~~~l~~~~~~~~l~~G~s~~ipa~~~~~~i~g~ 302 (312)
T COG1482 233 LTYPVPNE---DFALYKWDISGTAEFI---KQESFSILLVLEGEGTLIGGGQTLKLKKGESFFIPANDGPYTIEGE 302 (312)
T ss_pred EEEecccc---ceEEEEEeccChhhhc---cCCCcEEEEEEcCeEEEecCCEEEEEcCCcEEEEEcCCCcEEEEec
Confidence 33344433 5666677766522221 2236679999999999999999999999999999999443 44443
No 77
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.00061 Score=65.31 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=85.3
Q ss_pred EEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCCCccee-----ec--cCC--CCCCcccCC---ceeEEEEe
Q 022278 144 SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQI-----VG--STD--KQPLLETPG---EVFQLRKL 211 (300)
Q Consensus 144 ~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~~p~~~-----~~--~~~--d~~~~~~~g---~~~~~~~l 211 (300)
-.+|.+|+.+|+.|+.+|.+-..+-+.-.--+. =.-.+|..|+.+ +. +.+ +..+..+++ .. .....
T Consensus 249 ~~~L~PGEA~yL~AnepHAYlsGdcvECMA~SD-NvIRAGlTPK~~Dv~tL~smL~Y~~~~~~p~~~~~~~~~~-~~~~Y 326 (411)
T KOG2757|consen 249 YVRLNPGEAIYLEANEPHAYLSGDCVECMACSD-NVIRAGLTPKYIDVDTLCSMLTYKLTEQQPKLFPRSRLDG-YVLLY 326 (411)
T ss_pred heecCCCceeeecCCCcceeecCceeEEecccC-ceeeccCCCccccHHHHHhHhcccccccccccCCccCCCC-ceeEe
Confidence 368999999999999999988522211110000 000234334322 11 011 111111222 11 12233
Q ss_pred eCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEeCCCCceeEEecCCc
Q 022278 212 LPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKT 285 (300)
Q Consensus 212 ~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e 285 (300)
+|. -.+|.+...++.+|.+.-+ ..-.-.-++.|++|+|++..+ +..+.|++||++||++..+=.+..+.+-
T Consensus 327 ~Pp--i~eF~v~~~~v~~g~~~~~-~~~~~~SIllv~~G~g~l~~~t~~~~~v~rG~V~fI~a~~~i~~~~~sd~ 398 (411)
T KOG2757|consen 327 DPP--IEEFAVLETKVPTGESYKF-PGVDGPSILLVLKGSGILKTDTDSKILVNRGDVLFIPANHPIHLSSSSDP 398 (411)
T ss_pred CCC--CcceeEEEeecCCCceEEe-ecCCCceEEEEEecceEEecCCCCceeeccCcEEEEcCCCCceeeccCcc
Confidence 444 3468888888888776433 333444689999999999999 9999999999999999998888777554
No 78
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.72 E-value=8.9e-05 Score=68.41 Aligned_cols=62 Identities=21% Similarity=0.149 Sum_probs=51.6
Q ss_pred CCcccCcceeec-cceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 229 PGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 229 PG~~~p~~~~H~-~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
-|..++. |.|. +-+.+|+++|++.+.+||+.+.+++||++|++|+++|.+...++.+...|+
T Consensus 32 ~~~~~~~-H~H~~~~~l~~~~~G~~~~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~ 94 (287)
T TIGR02297 32 FGRNMPV-HFHDRYYQLHYLTEGSIALQLDEHEYSEYAPCFFLTPPSVPHGFVTDLDADGHVLT 94 (287)
T ss_pred cCCCCCC-cccccceeEEEEeeCceEEEECCEEEEecCCeEEEeCCCCccccccCCCcceEEEE
Confidence 3455665 6776 678999999999999999999999999999999999999877665544444
No 79
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.69 E-value=0.00017 Score=62.99 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=47.8
Q ss_pred cCCcccCcceeeccceEEEEEEeeEEEEe--CC--EEEEccCCcEEEeCCCCceeEEec
Q 022278 228 QPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GD--SWYPVQAGDVLWMAPFVPQWYAAL 282 (300)
Q Consensus 228 ~PG~~~p~~~~H~~eh~~~iL~G~G~~~~--~g--~~~~v~~GD~i~~~~~~~H~~~n~ 282 (300)
-||....+| .|..+|-+|+|+|...+.+ +| +...+++||++++|+|++|..++.
T Consensus 42 Gpn~r~d~H-~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~ 99 (177)
T PRK13264 42 GPNARTDFH-YDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQRE 99 (177)
T ss_pred cCCcccccc-cCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccC
Confidence 588888884 5888899999999999988 77 699999999999999999988763
No 80
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.66 E-value=0.00024 Score=58.17 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=51.2
Q ss_pred cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEE
Q 022278 103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSAT 170 (300)
Q Consensus 103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~ 170 (300)
..+.-+-+=-||.-.- .-+..||+++|+|+++++-++|+...+++||+++||+|..=.|+=.+++|
T Consensus 44 ~~~~GiWe~TpG~~r~--~y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g~W~V~Etvr 109 (116)
T COG3450 44 QVETGIWECTPGKFRV--TYDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFKGTWEVLETVR 109 (116)
T ss_pred CeeEeEEEecCccceE--EcccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCeEEEEEeeeeE
Confidence 4555566666763221 23559999999999999987789999999999999999999998644443
No 81
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.62 E-value=9e-05 Score=69.35 Aligned_cols=66 Identities=20% Similarity=0.327 Sum_probs=60.3
Q ss_pred EEEecCCcccCcceeeccceEEEEEEeeEEEE-eCCEEEEccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278 224 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR-LGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 290 (300)
Q Consensus 224 ~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~-~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi 290 (300)
+--+.||..-|- |.|.+.-..||.+|+|.|+ +||+..+.++||||.+|.+--|.--|.|+||+.++
T Consensus 96 lQlilPGEvAps-HrHsqsAlRFvveG~Ga~T~VdGer~~M~~GDfilTP~w~wHdHgn~g~eP~iWl 162 (351)
T COG3435 96 LQLILPGEVAPS-HRHNQSALRFVVEGKGAYTVVDGERTPMEAGDFILTPAWTWHDHGNEGTEPCIWL 162 (351)
T ss_pred hheecCcccCCc-ccccccceEEEEeccceeEeecCceeeccCCCEEEccCceeccCCCCCCCceEEE
Confidence 344679999986 8999999999999999887 89999999999999999999999999999999876
No 82
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.59 E-value=0.0013 Score=54.35 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=64.5
Q ss_pred CCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEE
Q 022278 99 AMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF 174 (300)
Q Consensus 99 ~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v 174 (300)
..|-.|..-.-++.||..+..+-..-=|-+|+++|+.+++. .+|+++.+++|...-+....+|.++..++.++++|
T Consensus 30 ~DgmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~~dm~~vCV 106 (126)
T PF06339_consen 30 DDGMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAKTDMRLVCV 106 (126)
T ss_pred cCCCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEecCCEEEEEE
Confidence 45557888899999998876664444788999999999986 47999999999998899999999999778888888
No 83
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=97.59 E-value=0.0032 Score=61.77 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=75.2
Q ss_pred cEEEeccCcEEEeCCCCceEEeeCCeEEEEEE-EeeccccCCCCcceee-----c--cCCCCCCcc--c---CCceeEEE
Q 022278 143 VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF-ERRYASLENHITEQIV-----G--STDKQPLLE--T---PGEVFQLR 209 (300)
Q Consensus 143 ~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v-~~~y~~~~g~~p~~~~-----~--~~~d~~~~~--~---~g~~~~~~ 209 (300)
....|++||++|+|||.+|.+-...-+.+.-- .-.|+ .|..|+.+- . +.+..+... . ..+. ...
T Consensus 237 N~v~l~pGeaifipAg~~HAyl~G~~iEima~SDnv~R--aGlT~K~idv~~ll~~l~f~~~~~~~~~~~~~~~~~-~~~ 313 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLR--AGLTPKYIDIPELVANVKFEAKPANQLLTQPVKQGA-ELD 313 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEcCCeEEEEEecCCcEEe--cCCCCCcccHHHHHhhcCCCCCCchhccccccccCC-eEE
Confidence 35789999999999999999875222222210 01111 332222110 0 111111110 0 0011 111
Q ss_pred EeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCc
Q 022278 210 KLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT 285 (300)
Q Consensus 210 ~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e 285 (300)
...|. .+|.+.+.+++++... . ...-..++++++|++.+..+|+...+++|+.+|++++...... .|+.
T Consensus 314 ~~~p~---~~F~~~~~~l~~~~~~-~--~~~~~~Illv~~G~~~i~~~~~~~~l~~G~~~fipa~~~~~~~-~g~~ 382 (389)
T PRK15131 314 FPIPV---DDFAFSLHDLSDQPTT-L--SQQSAAILFCVEGEAVLWKGEQQLTLKPGESAFIAANESPVTV-SGHG 382 (389)
T ss_pred ECCCC---CCcEEEEEEECCceEE-e--cCCCcEEEEEEcceEEEEeCCeEEEECCCCEEEEeCCCccEEE-eccc
Confidence 12232 2577777777664211 1 1123378999999999999999999999999999998765433 3543
No 84
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.58 E-value=0.00028 Score=65.64 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=47.3
Q ss_pred CCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC
Q 022278 113 ENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE 166 (300)
Q Consensus 113 PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~ 166 (300)
+......|.|+.=|++||++|++++.+ +|+.+.+++||.+++|++..|.++..
T Consensus 27 ~~~~~~~H~H~~~ei~~i~~G~~~~~i-~~~~~~l~~g~~~~I~p~~~H~~~~~ 79 (290)
T PRK13501 27 PQETFVEHTHQFCEIVIVWRGNGLHVL-NDHPYRITCGDVFYIQAADHHSYESV 79 (290)
T ss_pred CCCCCccccccceeEEEEecCceEEEE-CCeeeeecCCeEEEEcCCCccccccc
Confidence 433445678999999999999999999 99999999999999999999999863
No 85
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.57 E-value=0.00055 Score=63.07 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=47.4
Q ss_pred cCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEE
Q 022278 116 RSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLV 172 (300)
Q Consensus 116 ~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl 172 (300)
..+.|.|+.-|++||++|++++.+ +|+++.+++||.+++||+..|.... .++.+.+
T Consensus 35 ~~~~H~H~~~ei~~v~~G~~~~~i-~~~~~~l~~g~l~~i~p~~~H~~~~~~~~~~~~ 91 (278)
T PRK10296 35 VSGLHQHDYYEFTLVLTGRYYQEI-NGKRVLLERGDFVFIPLGSHHQSFYEFGATRIL 91 (278)
T ss_pred CCCCcccccEEEEEEEeceEEEEE-CCEEEEECCCcEEEeCCCCccceeeeCCCcEEE
Confidence 345678999999999999999999 9999999999999999999997653 3334544
No 86
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=97.56 E-value=0.00049 Score=65.06 Aligned_cols=131 Identities=17% Similarity=0.232 Sum_probs=76.5
Q ss_pred EECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee----------CCeEEEEEEEeeccccCCCCcceeec--cCCCCCC
Q 022278 131 VQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA----------EGSATLVVFERRYASLENHITEQIVG--STDKQPL 198 (300)
Q Consensus 131 LeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N----------~~~a~vl~v~~~y~~~~g~~p~~~~~--~~~d~~~ 198 (300)
-+|.+...+ ....+++||++|+|||+.|.+.+ |-.-|+-... | +++ .+.... +....+.
T Consensus 142 ~~g~~~~~l---n~v~v~~Gd~i~ipaGt~HA~~g~~~~Eiq~~SD~t~R~~d~~-r--~l~---ve~~l~~~~~~~~~~ 212 (302)
T TIGR00218 142 EDGLFKLLL---NRIKLKPGDFFYVPSGTPHAYKGGLVLEVMQNSDNVYRAGDTD-K--YLD---IEKLVEVLTFPHVPE 212 (302)
T ss_pred hcCcHHHHh---cccccCCCCEEEeCCCCcccccCceEEEEEcCCCcEEEeeccC-c--ccC---HHHHHhhccCCCCCc
Confidence 445444333 46799999999999999998763 1122222221 1 111 011111 1111111
Q ss_pred c-----ccCCceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCC
Q 022278 199 L-----ETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAP 273 (300)
Q Consensus 199 ~-----~~~g~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~ 273 (300)
. +...+. ....+.| ..+|.++++++...... ..+....++++++|++.+..+|...++++|+.+++|+
T Consensus 213 ~~~~~~~~~~~~-~~~~~~~---~~~F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~ipa 285 (302)
T TIGR00218 213 FHLKGQPQKFGA-EILFMVP---TEYFSVYKWDISGKAEF---IQQQSALILSVLEGSGRIKSGGKTLPLKKGESFFIPA 285 (302)
T ss_pred cccccccccCCc-EEEEcCC---CCCeEEEEEEeCCceee---ccCCCcEEEEEEcceEEEEECCEEEEEecccEEEEcc
Confidence 1 111111 1112223 34677888888654322 2234457899999999999999999999999999999
Q ss_pred CCce
Q 022278 274 FVPQ 277 (300)
Q Consensus 274 ~~~H 277 (300)
++..
T Consensus 286 ~~~~ 289 (302)
T TIGR00218 286 HLGP 289 (302)
T ss_pred CCcc
Confidence 9854
No 87
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.45 E-value=0.00066 Score=50.99 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=44.0
Q ss_pred eEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe-CCEEEEccCCcEEEeCCCCceeEE
Q 022278 220 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYA 280 (300)
Q Consensus 220 ~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~-~g~~~~v~~GD~i~~~~~~~H~~~ 280 (300)
+..-+..-+||.. +. .....|..|||+|+..++. +|+.+.++|||++++|+|......
T Consensus 7 ~~~g~w~~~pg~~-~~--~~~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 7 FSAGVWECTPGKF-PW--PYPEDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEEECEEE-EE--EESSEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEEECCcee-Ee--eCCCCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEE
Confidence 4555677778763 22 2333678999999999999 899999999999999999765443
No 88
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.40 E-value=0.00066 Score=62.62 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=46.4
Q ss_pred CCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee
Q 022278 113 ENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 113 PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N 165 (300)
|....+.|.|+.-+++||++|++++++ +|+++.+++||.+++|++..|.+..
T Consensus 27 ~~~~~~~H~h~~~~l~~v~~G~~~~~i-~~~~~~l~~g~l~li~~~~~H~~~~ 78 (282)
T PRK13502 27 PQDVFAEHTHEFCELVMVWRGNGLHVL-NERPYRITRGDLFYIRAEDKHSYTS 78 (282)
T ss_pred CCCCCCccccceEEEEEEecCcEEEEE-CCEEEeecCCcEEEECCCCcccccc
Confidence 343345678899999999999999999 9999999999999999999999876
No 89
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.40 E-value=0.00055 Score=64.68 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=45.1
Q ss_pred CCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee
Q 022278 117 SALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 117 ~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N 165 (300)
.+.|.|+.-|++||++|++++.+ +|+.+.+++||.++++++..|.+..
T Consensus 61 ~~~H~H~~~el~~v~~G~g~~~v-~~~~~~l~~Gdl~~I~~~~~H~~~~ 108 (312)
T PRK13500 61 FAEHTHDFCELVIVWRGNGLHVL-NDRPYRITRGDLFYIHADDKHSYAS 108 (312)
T ss_pred CCccccceEEEEEEEcCeEEEEE-CCEEEeecCCeEEEECCCCeecccc
Confidence 45678999999999999999999 9999999999999999999999986
No 90
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=97.33 E-value=0.00091 Score=53.39 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=52.7
Q ss_pred EEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC-CeEEEEEEEeeccccC
Q 022278 107 YLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE-GSATLVVFERRYASLE 182 (300)
Q Consensus 107 ~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~-~~a~vl~v~~~y~~~~ 182 (300)
+.++|+||+....+ +.+.+.|+||++|+++ + +++...+.+|+.+++..+..-.+++. +.++++++ --+|+.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~--v-~~~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll--~GePl~ 74 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVE--V-GGEEDPLEAGQLVVLEDGDEIELTAGEEGARFLLL--GGEPLN 74 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEE--E-TTTTEEEETTEEEEE-SECEEEEEESSSSEEEEEE--EE----
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEE--E-CCCcceECCCcEEEECCCceEEEEECCCCcEEEEE--EccCCC
Confidence 56788999887655 6788999999999965 6 66668899999999998888888885 89999999 445544
No 91
>PLN02288 mannose-6-phosphate isomerase
Probab=97.31 E-value=0.0021 Score=63.11 Aligned_cols=128 Identities=17% Similarity=0.170 Sum_probs=73.9
Q ss_pred EEEeccCcEEEeCCCCceEEeeCCeEEEEEE-EeeccccCCCCccee-----ec--cCCCCCCcccCCcee--EEEEeeC
Q 022278 144 SSKLMVDSYTYLPPNFAHSLRAEGSATLVVF-ERRYASLENHITEQI-----VG--STDKQPLLETPGEVF--QLRKLLP 213 (300)
Q Consensus 144 ~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v-~~~y~~~~g~~p~~~-----~~--~~~d~~~~~~~g~~~--~~~~l~p 213 (300)
...|++|+++|+|||.+|.+-...-..+.-- ..+. ..|..|+.+ +. +.+..+...+..... ..+...|
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G~~vE~MA~SDNVl--RaGLTpK~~Dv~~L~~~l~f~~~~~~~~~~~~~~~~~~~y~~ 329 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSGECIECMATSDNVV--RAGLTPKFRDVQTLCSMLTYKQGFPEILTGVPVDPYTTRYLP 329 (394)
T ss_pred eEecCCCCEEEecCCCCceecCCCeEEeeecCCcee--eecCCCccccHHHHHhhccCccCCcccccccccCCCceEECC
Confidence 5789999999999999999875332232211 0011 144444411 11 011111110110000 0112223
Q ss_pred CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEE--EEccCCcEEEeCCCCc
Q 022278 214 QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW--YPVQAGDVLWMAPFVP 276 (300)
Q Consensus 214 ~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~--~~v~~GD~i~~~~~~~ 276 (300)
. -.+|.+.++++.+|..... ....-..++++++|++.+..++.. ..+++|+++|++++..
T Consensus 330 P--~~eF~v~~~~l~~~~~~~~-~~~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 330 P--FDEFEVDHCDVPPGASVVF-PAVPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred C--CcceEEEEEEeCCCCeEee-cCCCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCc
Confidence 2 3578888999988864221 112334589999999999887776 5699999999998754
No 92
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.26 E-value=0.00033 Score=60.61 Aligned_cols=50 Identities=16% Similarity=0.438 Sum_probs=41.6
Q ss_pred ceeeccceEEEEEEeeEEEEeC---CE--EEEccCCcEEEeCCCCceeEEecCCc
Q 022278 236 KEVHYNQHGLLLLEGQGIYRLG---DS--WYPVQAGDVLWMAPFVPQWYAALGKT 285 (300)
Q Consensus 236 ~~~H~~eh~~~iL~G~G~~~~~---g~--~~~v~~GD~i~~~~~~~H~~~n~G~e 285 (300)
-|+|..+|.-|+|.|.|+..+- |+ |..+.+||.|-+|||..|||.=+-+-
T Consensus 90 EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~ 144 (181)
T COG1791 90 EHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESP 144 (181)
T ss_pred HhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCC
Confidence 4789999999999999998863 34 45678999999999999999866443
No 93
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=97.22 E-value=0.001 Score=62.69 Aligned_cols=52 Identities=10% Similarity=-0.024 Sum_probs=46.3
Q ss_pred CCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee
Q 022278 113 ENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 113 PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N 165 (300)
|....+.|-|..=|++||++|++.+.+ +|+++.+.+||.+.++++.+|.+..
T Consensus 35 ~~~m~~~HwH~e~Ei~yv~~G~~~~~i-~g~~~~l~~Gd~ili~s~~~H~~~~ 86 (302)
T PRK10371 35 PHIMPTSHWHGQVEVNVPFDGDVEYLI-NNEKVQINQGHITLFWACTPHQLTD 86 (302)
T ss_pred CCCCCCCCccccEEEEEecCCcEEEEE-CCEEEEEcCCcEEEEecCCcccccc
Confidence 333445678999999999999999999 9999999999999999999999875
No 94
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.18 E-value=0.00063 Score=62.39 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=45.8
Q ss_pred cCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC
Q 022278 116 RSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE 166 (300)
Q Consensus 116 ~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~ 166 (300)
..+.|.|+.=|++||++|.+++.+ +++.+.+++||.+++|++..|.+.+.
T Consensus 27 ~~~~H~H~~~ei~~v~~G~~~~~i-~~~~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 27 AFPEHHHDFHEIVIVEHGTGIHVF-NGQPYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred cccccccCceeEEEEecCceeeEe-cCCcccccCCcEEEECCCccchhhhc
Confidence 345678999999999999999999 99999999999999999999998863
No 95
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.18 E-value=0.0016 Score=60.13 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=56.7
Q ss_pred cCCCCCCcccC---C-ceeEEEEee--CCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEE---E
Q 022278 192 STDKQPLLETP---G-EVFQLRKLL--PQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW---Y 261 (300)
Q Consensus 192 ~~~d~~~~~~~---g-~~~~~~~l~--p~~~~-~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~---~ 261 (300)
..+|+.|.+.+ | .+...+.|. +++.+ +.+ ++.|.+|-..|. |.|...+..||++|. +..||.. .
T Consensus 4 ~~~d~~w~~~~p~~~~~~~~~~~L~gd~~~~g~~~~---~vkf~~g~~~pp-h~H~~~~~~~Vi~G~--~~~~~~~a~~~ 77 (251)
T PF14499_consen 4 HADDVKWGPLNPARGDKGPGAAVLWGDPTKDGPSGM---RVKFPAGFSSPP-HIHNADYRGTVISGE--LHNGDPKAAAM 77 (251)
T ss_dssp GS--EEEE--TTS-TTS--EEEEEEEE--TTS-EEE---EEEE-TT-EE---BEESS-EEEEEEESE--EEETTEE----
T ss_pred chhhccccccCCCCCCCCcceeeeecCcccCCcceE---EEEcCCCccCCC-cceeeeEEEEEEEeE--EEcCCCcccce
Confidence 35666666544 3 455666665 53433 334 567889999996 799888899999996 5556654 4
Q ss_pred EccCCcEEEeCCCCceeEEecCCccEEEEEEe
Q 022278 262 PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK 293 (300)
Q Consensus 262 ~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k 293 (300)
.+.+|++.+.|+|.+|.-.+.|++.+.|+-+-
T Consensus 78 ~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g 109 (251)
T PF14499_consen 78 WLPAGSYWFQPAGEPHITAAEGETNLLFIEIG 109 (251)
T ss_dssp -E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S
T ss_pred ecCCCceEeccCCCceeeeccCccEEEEEEeC
Confidence 59999999999999999999998889888543
No 96
>COG1741 Pirin-related protein [General function prediction only]
Probab=97.03 E-value=0.084 Score=49.56 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=105.2
Q ss_pred EEEcCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCC--CceEEeeC--C--eEEE--EEEEeecc
Q 022278 109 ANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRAE--G--SATL--VVFERRYA 179 (300)
Q Consensus 109 v~l~PG~~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~--~~H~~~N~--~--~a~v--l~v~~~y~ 179 (300)
..+.||...+.|+|. -|.+=||++|+++=.-..|..-.+++||.-..-|| +-|+=.|. + +.+. ||+.-+..
T Consensus 49 ~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~lP~~ 128 (276)
T COG1741 49 DVLAPGRGFPPHPHRGLETVTYVLDGEIEHRDSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLPAA 128 (276)
T ss_pred ccccCCCcCCCCCCCCcEEEEEEEccEEEEeecCCceeeecccceeEEcCCCceeecccCCccCCCccceeeeecCCchh
Confidence 357788767778775 58888999999998864577889999999999887 45554452 1 2222 46544333
Q ss_pred ccCCCCcceeecc-CCCCCCcccCCceeEEEEeeCC-C--CC---cc-eEEEEEEecCCcccCcceeeccceEEEEEEee
Q 022278 180 SLENHITEQIVGS-TDKQPLLETPGEVFQLRKLLPQ-A--VP---FD-FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ 251 (300)
Q Consensus 180 ~~~g~~p~~~~~~-~~d~~~~~~~g~~~~~~~l~p~-~--~~---~~-~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~ 251 (300)
. ++.+|..--.. .+++|.... +++.+...-. . .+ .+ ..+-.+.+++|+.+..+ --+.+=.+|+++|
T Consensus 129 ~-k~~~P~yq~~~~~~~~p~~~~---g~~~rvi~G~~~g~~~pv~~~~~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G- 202 (276)
T COG1741 129 D-KMIAPRYQHLAFPDEIPRVEL---GLTARVIAGRDGGLSSPVRQDSLHYVDLRLEAGARLQLP-PAGRRAYLYVIEG- 202 (276)
T ss_pred h-ccCCcccccccCcccCceeec---ceEEEEeccccCCcccccccceeEEEEEEeCCCceEecC-CCCceEEEEEEEe-
Confidence 2 22345444444 445555444 2344433311 1 11 01 44456677888887664 3344556788888
Q ss_pred EEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278 252 GIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 292 (300)
Q Consensus 252 G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 292 (300)
.+.+||+.- ..+|-..+-.+..=.+.+.++.++++|++
T Consensus 203 -~l~v~g~~~--~~~~~l~i~~g~~i~l~a~~~~~a~vLL~ 240 (276)
T COG1741 203 -TLEVNGQHE--TDGDGLAILDGDEITLVADSPAGARVLLL 240 (276)
T ss_pred -EEEEccccc--ccccceEEecCCeEEEEecCCCCeEEEEE
Confidence 666777654 44444444443333566666777888776
No 97
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.03 E-value=0.0011 Score=55.64 Aligned_cols=48 Identities=31% Similarity=0.416 Sum_probs=42.3
Q ss_pred CcccCcceeeccceE-EEEEEeeEEEEeCC---EEEEccCCcEEEeCCCCce
Q 022278 230 GDFLNVKEVHYNQHG-LLLLEGQGIYRLGD---SWYPVQAGDVLWMAPFVPQ 277 (300)
Q Consensus 230 G~~~p~~~~H~~eh~-~~iL~G~G~~~~~g---~~~~v~~GD~i~~~~~~~H 277 (300)
|+-.++||-|...|+ +-+|+|++.+.++| ...+|+.||++.+|+|+.|
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH 103 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGH 103 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCccc
Confidence 677788888887755 67899999999875 7899999999999999999
No 98
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.02 E-value=0.0019 Score=59.48 Aligned_cols=59 Identities=14% Similarity=0.267 Sum_probs=48.5
Q ss_pred cCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeC--CeEEEEEEE
Q 022278 116 RSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE--GSATLVVFE 175 (300)
Q Consensus 116 ~~~~~~h~-gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~--~~a~vl~v~ 175 (300)
....|.|+ .-+++||++|++++.+ +|+.+.+++||.+.+|++..|.+... ....++.+.
T Consensus 35 ~~~~H~H~~~~~l~~~~~G~~~~~~-~~~~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~i~ 96 (287)
T TIGR02297 35 NMPVHFHDRYYQLHYLTEGSIALQL-DEHEYSEYAPCFFLTPPSVPHGFVTDLDADGHVLTVR 96 (287)
T ss_pred CCCCcccccceeEEEEeeCceEEEE-CCEEEEecCCeEEEeCCCCccccccCCCcceEEEEec
Confidence 34667787 6899999999999999 99999999999999999999999852 233445443
No 99
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=96.97 E-value=0.044 Score=48.33 Aligned_cols=171 Identities=15% Similarity=0.122 Sum_probs=92.5
Q ss_pred CCCCeeeccCCCCCcceEEEEecCCCC--CcEEEE--EEEEcCCCcCCCCCCCceEEEEEEECE-EEEEEcCCc-E-EEe
Q 022278 75 TPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMY--LANMQENARSALPPHDVERFIFVVQGS-AMLTNASGV-S-SKL 147 (300)
Q Consensus 75 ~~e~~~~~~~p~~~~~~~~~L~sp~~g--~~f~~~--lv~l~PG~~~~~~~h~gEEf~yVLeG~-v~l~v~gg~-~-~~L 147 (300)
+++++...+=.+-.|.+..+.+.|..+ +.|... +.++...+... .-.+.++.+.+|+|. +.|+. +++ . ..|
T Consensus 2 r~~d~~~~pWkNggG~T~Ei~~~P~~~~~~~F~wRiS~A~V~~~g~FS-~FpG~~R~l~~L~G~gl~L~~-~~~~~~~~l 79 (184)
T PF05962_consen 2 RAEDYPTMPWKNGGGTTREIAIYPEGSAKRDFDWRISIATVEADGPFS-DFPGYDRILTLLEGNGLRLTH-DGQQEHTLL 79 (184)
T ss_dssp -GGG-EEEE-TTSSEEEEEEEE-SSSCCCCC-SEEEEEEEE-SSEEE----TT-EEEEEEEESS-EEEEE-TTCSE-EEE
T ss_pred CHHHCCcccccCCCeEEEEEEEcCCCCccCCceEEEEEEEEcCCCCCC-CCCCCcEEEEEEeCCcEEEec-CCCcceecc
Confidence 344444432222345566677766543 345443 55565544421 246889999999999 99999 766 4 459
Q ss_pred ccCcEEEeCCCCceEEee-CCeEEEEEEEeeccccCCCCcceeeccCCCCCCcccCCceeEEEEee-CCCCCcceEEEEE
Q 022278 148 MVDSYTYLPPNFAHSLRA-EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLL-PQAVPFDFNIHIM 225 (300)
Q Consensus 148 ~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~~~~~~~g~~~~~~~l~-p~~~~~~~~~~~~ 225 (300)
++++.+.|+.+.+-.-+. +.+++-+-++ |.+-.. ...++.+. +.. + .+
T Consensus 80 ~p~~~~~F~G~~~v~~~l~~G~~~dfNlM--~r~~~~---------------------~~~~~~~~~~~~------~-~~ 129 (184)
T PF05962_consen 80 QPFQPFAFDGDWPVTSELLDGPVRDFNLM--TRRGRW---------------------RARVRVLNQDGT------L-EL 129 (184)
T ss_dssp -BT--EEEETTS-EEEEESSS-EEEEEEE--E-TTTE---------------------EEEEEEEEEECE------E-EE
T ss_pred CCCCcEEcCCCCeEEEEECCCCEEEEEEE--ecCCcc---------------------eEEEEEEeCCCc------E-EE
Confidence 999999999998877764 6777776663 322110 11222221 110 0 00
Q ss_pred EecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEE
Q 022278 226 DFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRY 289 (300)
Q Consensus 226 tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~f 289 (300)
.. .......+|+++|+..+..+++.+.+.+||.+|+.+ ++.+.-.++..+-+
T Consensus 130 ~~----------~~~~~~l~~~~~G~~~i~~~~~~~~L~~~d~l~~~~--~~~~~l~~~g~ll~ 181 (184)
T PF05962_consen 130 KL----------PAASTVLVYVLEGAWSITEGGNCISLSAGDLLLIDD--EEDLPLTGDGQLLW 181 (184)
T ss_dssp -E----------E--SEEEEEESSS-EEECCCEEEEEE-TT-EEEEES--EECEEEEEECCEEE
T ss_pred ee----------CCCCEEEEEEeeCcEEEecCCCceEcCCCCEEEEeC--CCceEecCCeeEEE
Confidence 00 111223589999998888888999999999999998 55555555555443
No 100
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.91 E-value=0.0027 Score=58.89 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=38.5
Q ss_pred eEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCC
Q 022278 243 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK 284 (300)
Q Consensus 243 h~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~ 284 (300)
...|+++|+|.+.+||+.+.+++||+++++|+.+|.+....+
T Consensus 51 ~i~~~~~G~~~~~~~~~~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 51 ILNLTIRGQGVIFNGGRAFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred EEEEEEeccEEEecCCeeEecCCCCEEEECCCCceeeccCCC
Confidence 367899999999999999999999999999999999877655
No 101
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=96.82 E-value=0.0019 Score=55.65 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=35.6
Q ss_pred CCCCCCceEEEEEEECEEEEEE--cCCcE--EEeccCcEEEeCCCCceEEee
Q 022278 118 ALPPHDVERFIFVVQGSAMLTN--ASGVS--SKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 118 ~~~~h~gEEf~yVLeG~v~l~v--~gg~~--~~L~~Gds~yfpa~~~H~~~N 165 (300)
..|.|.-||.-|+++|+..+.+ .+++. ..+++||.+.+|+|+.|++.-
T Consensus 86 ~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~ 137 (157)
T PF03079_consen 86 EEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTL 137 (157)
T ss_dssp S-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEE
T ss_pred eeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEc
Confidence 3457999999999999998877 23443 479999999999999999984
No 102
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=96.82 E-value=0.0027 Score=52.91 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=39.1
Q ss_pred EcCCCcCCCC-CCCceEEEEEEECEEEEEEcCC---cEEEeccCc-EEEeCCCCceEEee-CCeEEEEEE-Eeeccc
Q 022278 111 MQENARSALP-PHDVERFIFVVQGSAMLTNASG---VSSKLMVDS-YTYLPPNFAHSLRA-EGSATLVVF-ERRYAS 180 (300)
Q Consensus 111 l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg---~~~~L~~Gd-s~yfpa~~~H~~~N-~~~a~vl~v-~~~y~~ 180 (300)
.++|...+.| ++..+++++|++|++++.+.++ +++.|...+ .+++||+..|.+.| .+.+.+|++ ...|.|
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~svlLv~as~~yd~ 116 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSEDSVLLVLASEPYDE 116 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT-EEEEEESS---G
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCCcEEEEEcCCCCCh
Confidence 4444434566 4678999999999999998332 568888775 89999999999998 444555544 555655
No 103
>PHA01976 helix-turn-helix protein
Probab=96.62 E-value=0.00015 Score=52.77 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=38.2
Q ss_pred cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeee
Q 022278 27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYK 68 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~ 68 (300)
-|++++|+++|+|++.+|++|+|...|+. |+++||++...|+
T Consensus 16 lt~~~lA~~~gvs~~~v~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~ 62 (67)
T PHA01976 16 WSAPELSRRAGVRHSLIYDFEADKRLPNLKTLLRLADALGVTLDWLC 62 (67)
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHh
Confidence 47899999999999999999999999997 8999999887764
No 104
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=96.60 E-value=0.00028 Score=49.16 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=32.4
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCc
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFT 63 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~t 63 (300)
|++++|+++|+|++.+|++|+|...|+. |++.||++
T Consensus 17 tq~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~i~~~lgv~ 57 (58)
T TIGR03070 17 TQADLADLAGVGLRFIRDVENGKPTVRLDKVLRVLDALGLE 57 (58)
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHcCCC
Confidence 6789999999999999999999998887 77787765
No 105
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=96.59 E-value=0.0001 Score=53.14 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=34.4
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~ 69 (300)
|+.++|+++++|+++||++|+|...|+. |++.+|++...|+.
T Consensus 14 t~~~~a~~~~i~~~~i~~~e~g~~~~~~~~l~~i~~~~~v~~~~l~~ 60 (64)
T PF12844_consen 14 TQKDLAEKLGISRSTISKIENGKRKPSVSTLKKIAEALGVSLDELFD 60 (64)
T ss_dssp -HHHHHHHHTS-HHHHHHHHTTSS--BHHHHHHHHHHHTS-HHHHCC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCcCCCHHHHHHHHHHhCCCHHHHhc
Confidence 7889999999999999999999999997 99999999888775
No 106
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein. gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module.
Probab=96.57 E-value=0.00034 Score=54.69 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=33.4
Q ss_pred ccccccCCCCcceeeecCCCCChhh-----hhcccCCccee
Q 022278 31 SILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSV 66 (300)
Q Consensus 31 ~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~ 66 (300)
+||+++|+|++.||++|||..+||. |+++||++.++
T Consensus 48 qLAe~~GIs~stLs~iE~g~~~Ps~~tL~kI~~aLgi~l~v 88 (89)
T TIGR02684 48 QLARKTGLSRESLYKALSGKGNPTFDTILKVTKALGLKLTA 88 (89)
T ss_pred HHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHcCCceee
Confidence 5999999999999999999999999 99999998764
No 107
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=96.55 E-value=0.00019 Score=59.03 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=40.1
Q ss_pred cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278 27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~ 69 (300)
-|+++||+++|+|+++||++|||...||. |+++|+++...++.
T Consensus 19 lsq~eLA~~~Gis~~~is~iE~g~~~ps~~~l~kIa~aL~v~~~~L~~ 66 (120)
T PRK13890 19 MTKKELSERSGVSISFLSDLTTGKANPSLKVMEAIADALETPLPLLLE 66 (120)
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHhc
Confidence 37899999999999999999999999998 99999999999875
No 108
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.53 E-value=0.011 Score=51.43 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=50.2
Q ss_pred CCCCCceEEEEEEECEEEEEE--cCCcEE--EeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCCCcc
Q 022278 119 LPPHDVERFIFVVQGSAMLTN--ASGVSS--KLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITE 187 (300)
Q Consensus 119 ~~~h~gEEf~yVLeG~v~l~v--~gg~~~--~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~~p~ 187 (300)
.|.|.-+|.-|+|+|+.-+.+ .+|+.+ .+.+||.+.+|+|+.|++.=.+.-. +.-.|-|...+|+.|-
T Consensus 90 EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~-f~AvRlF~~~~gWVa~ 161 (181)
T COG1791 90 EHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPN-FKAVRLFTEPEGWVAI 161 (181)
T ss_pred HhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCc-EEEEEEeeCCCCceee
Confidence 457999999999999998887 345554 6789999999999999998433222 3333556666776543
No 109
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=96.49 E-value=0.074 Score=47.79 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=101.1
Q ss_pred cCCCcCCCCCCCceEEEEEEECEEEEEE-c--CCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCCCcce
Q 022278 112 QENARSALPPHDVERFIFVVQGSAMLTN-A--SGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQ 188 (300)
Q Consensus 112 ~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~--gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~~p~~ 188 (300)
.|+.+...|-.++|||+|=++|.+.+.+ + +-+...++.||++.+|+.++|+-.-=..+.=|+|+++-.-.+..--..
T Consensus 41 GPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFantvGlVVEr~R~~tE~D~iR~ 120 (279)
T KOG3995|consen 41 GPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLRY 120 (279)
T ss_pred CCCcccccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhccceeEEEEeccCCCccceEEE
Confidence 5666667778899999999999999987 2 224578999999999999999743211122244444332222111222
Q ss_pred eeccCCC--------------------------CCC---cccCC-----ceeEEEEee---CCC----------------
Q 022278 189 IVGSTDK--------------------------QPL---LETPG-----EVFQLRKLL---PQA---------------- 215 (300)
Q Consensus 189 ~~~~~~d--------------------------~~~---~~~~g-----~~~~~~~l~---p~~---------------- 215 (300)
.+|+-.+ .+. +|.+| .-+..+++. |-+
T Consensus 121 yvg~~~~vlfE~wfy~~Dlgtql~p~I~eF~~s~E~rTgkp~~~~~~C~~pf~~~t~~~~~P~s~~~~~~~h~~e~~~gp 200 (279)
T KOG3995|consen 121 YVGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEEYRTGKPIPDQLLCEPPFPLSTRSIMEPMSLDAWLDSHHRELQAGP 200 (279)
T ss_pred EeccchhhHHHHHhhHHhhhhhhHHHHHHHhcchhhhcCCCCCCccccCCCccccccccccccchhHHHHHHHHHHhcCC
Confidence 3332222 111 11111 000111111 111
Q ss_pred --C-CcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecC
Q 022278 216 --V-PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG 283 (300)
Q Consensus 216 --~-~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G 283 (300)
. +..+.-.++-+--|.+-. +....+--++.++|..++..+|..+-.++...+.++++-.-|..--|
T Consensus 201 ~~~~g~~y~t~v~~~g~gs~~~--~~~~v~~~~w~~e~s~vv~~~g~~~~~~~~s~~~~~~~s~~~~~~~g 269 (279)
T KOG3995|consen 201 LSLFGDTYETQVIAYGQGSSEG--LRQNVDVWLWQLEGSSVVTMGGRRLSLAPDSLLVLAGTSYAWERTQG 269 (279)
T ss_pred eeeeCccceeeEEEeccccchh--hcCceEEEEEEecCceEEeecCeEEeeCCcceEEEcCcchhhhhccC
Confidence 0 123444556666666543 34445555788999999999999999999999999998766554444
No 110
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=96.36 E-value=0.00037 Score=59.87 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=39.7
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~ 69 (300)
|+++||+++++|+++||++|||...|+. |+++||++...++.
T Consensus 84 SqeeLA~~lgvs~s~IsriE~G~~~Ps~~~l~kLa~~Lgvsl~el~~ 130 (154)
T TIGR00270 84 SQEQLAKKIQEKESLIKKIENAEIEPEPKVVEKLEKLLKIKLREQVP 130 (154)
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHcc
Confidence 6899999999999999999999999998 89999999999875
No 111
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=96.32 E-value=0.00018 Score=50.17 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=33.2
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCccee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSV 66 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~ 66 (300)
|+.++|+++|+|++.+|++|+|...|+. |+.+||++...
T Consensus 11 s~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ia~~l~~~~~~ 54 (55)
T PF01381_consen 11 SQKELAEKLGISRSTISRIENGKRNPSLDTLKKIAKALGVSPEY 54 (55)
T ss_dssp -HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHHHHHHHTSEHHH
T ss_pred CHHHHHHHhCCCcchhHHHhcCCCCCCHHHHHHHHHHHCCCHHH
Confidence 5688999999999999999999999998 88888887654
No 112
>PRK08359 transcription factor; Validated
Probab=96.31 E-value=0.00054 Score=60.03 Aligned_cols=43 Identities=9% Similarity=-0.002 Sum_probs=40.0
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeeee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKRD 70 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~~ 70 (300)
||++||++.|+|.++|+++|||...|++ |+++|+++...++++
T Consensus 100 SQeeLA~~lgvs~stI~~iE~G~~~Ps~~~l~kLak~l~VsL~e~~~~ 147 (176)
T PRK08359 100 SYEELSHEVGLSVNDLRRIAHGEYEPTIKEAKKLERYFKIKLIERVEE 147 (176)
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCcCCCHHHHHHHHHHhCCcccccccc
Confidence 7899999999999999999999999999 999999998887753
No 113
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.26 E-value=0.021 Score=52.91 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=43.3
Q ss_pred CCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee---CCeEEEEEE
Q 022278 122 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA---EGSATLVVF 174 (300)
Q Consensus 122 h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N---~~~a~vl~v 174 (300)
..+-++.||++|+.++.+ +++.+.+++||.+.+||+.+|.+.. .......|+
T Consensus 47 ~~~~~i~~~~~G~~~~~~-~~~~~~~~~g~~i~i~p~~~h~~~~~~~~~~~~~~~~ 101 (290)
T PRK10572 47 MKGYILNLTIRGQGVIFN-GGRAFVCRPGDLLLFPPGEIHHYGRHPDSDEWYHQWV 101 (290)
T ss_pred ccceEEEEEEeccEEEec-CCeeEecCCCCEEEECCCCceeeccCCCCCceeEEEE
Confidence 456788999999999999 9999999999999999999999875 233344455
No 114
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=96.25 E-value=0.021 Score=47.61 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=44.8
Q ss_pred ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC----EEEEccCCc-EEEeCCCCceeEEecCCccEEEEEEe
Q 022278 219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD----SWYPVQAGD-VLWMAPFVPQWYAALGKTRTRYLLYK 293 (300)
Q Consensus 219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g----~~~~v~~GD-~i~~~~~~~H~~~n~G~e~~~fi~~k 293 (300)
.+.+-+...++|..=+.|-|+..++.+++++|+..+.+++ +.+.+...+ .+++||++.|++.|.+++ +.-|++.
T Consensus 32 ~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~a 110 (131)
T PF05523_consen 32 KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVLA 110 (131)
T ss_dssp -EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEEEE
T ss_pred cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCC-cEEEEEc
Confidence 3555555566776566666667778999999999999765 566666654 899999999999999887 7777765
Q ss_pred e
Q 022278 294 D 294 (300)
Q Consensus 294 d 294 (300)
|
T Consensus 111 s 111 (131)
T PF05523_consen 111 S 111 (131)
T ss_dssp S
T ss_pred C
Confidence 4
No 115
>PRK06424 transcription factor; Provisional
Probab=96.15 E-value=0.00073 Score=57.42 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=35.8
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCccee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSV 66 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~ 66 (300)
||++||+++|+|++.||++|||...|+. |+++||++.+.
T Consensus 99 SQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvsl~e 142 (144)
T PRK06424 99 SQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGITLIE 142 (144)
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 6899999999999999999999999998 89999988754
No 116
>TIGR02612 mob_myst_A mobile mystery protein A. Members of this protein family are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein B, a member of the Fic protein family (pfam02661). This protein is encoded by the upstream member of the gene pair and belongs to a family of helix-turn-helix DNA binding proteins (pfam01381).
Probab=96.13 E-value=0.00056 Score=58.52 Aligned_cols=44 Identities=11% Similarity=-0.108 Sum_probs=39.1
Q ss_pred ccCCcccccccCCCCcceeeecCCCCC--hhh-----hhcccCCcceeeee
Q 022278 26 FCSAPSILDRETSSKPMYWKVTNPTLS--PSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 26 ~~~~~~~a~r~~lsk~~~Sqver~~~s--ps~-----I~~~lg~trs~f~~ 69 (300)
=.|+++||+++|+|++.||++|||..+ |+. |+++||++...||.
T Consensus 38 GmTq~eLAerlGVS~~tIs~iE~G~~~~~psl~~L~kIA~aLgv~~~~l~~ 88 (150)
T TIGR02612 38 GMSGAQLAGRLGVTPQRVEALEKSELSGTVTLKTLRAAAEALDCTFVYAFV 88 (150)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCCCHHHHHHHHHHcCCCHHHHhC
Confidence 367899999999999999999999864 665 99999999999885
No 117
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.06 E-value=0.0011 Score=65.31 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=35.5
Q ss_pred CccCCcccccccCCCCcceeeecCCCC-Chhh-----hhcccCCc
Q 022278 25 GFCSAPSILDRETSSKPMYWKVTNPTL-SPSH-----LQDLPGFT 63 (300)
Q Consensus 25 ~~~~~~~~a~r~~lsk~~~Sqver~~~-sps~-----I~~~lg~t 63 (300)
..||+++||+.+|.||+|+||+||+.. +||. |.++||++
T Consensus 2 ~~~~~~~~~~~~~~~~~y~~~l~~~~~~~ps~~~~~~~~~~~~~~ 46 (399)
T PRK08099 2 QGCTLQQVADASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLE 46 (399)
T ss_pred CCCcHHHHHHHhCCcHHHHHHHhcCCCCCccHHHHHHHHHHhCCC
Confidence 579999999999999999999999875 6888 88899887
No 118
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.03 E-value=0.068 Score=43.81 Aligned_cols=53 Identities=26% Similarity=0.318 Sum_probs=41.8
Q ss_pred EEEEEEecCCcccCcceeec-cceEEEEEEeeEEEE-eCCEEEEccCCcEEEeCCCCce
Q 022278 221 NIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYR-LGDSWYPVQAGDVLWMAPFVPQ 277 (300)
Q Consensus 221 ~~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~G~~~-~~g~~~~v~~GD~i~~~~~~~H 277 (300)
..-+..=.||.. +-++ +.|.-|||+|+++|+ ++|+-.+++|||..++++|-.-
T Consensus 46 ~~GiWe~TpG~~----r~~y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g 100 (116)
T COG3450 46 ETGIWECTPGKF----RVTYDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFKG 100 (116)
T ss_pred eEeEEEecCccc----eEEcccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCeE
Confidence 344676678875 3444 446789999999999 6679999999999999999654
No 119
>PF13560 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_A 3PXP_A 2OFY_A.
Probab=95.99 E-value=0.00042 Score=50.20 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=30.4
Q ss_pred CCcccccccCCCCcceeeecCCCCC-hhh-----hhcccCCccee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLS-PSH-----LQDLPGFTRSV 66 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~s-ps~-----I~~~lg~trs~ 66 (300)
|++++|+++|+|++++|++|+|... |+. |++++|++.+.
T Consensus 16 s~~~lA~~~g~s~s~v~~iE~G~~~~p~~~~l~~l~~~l~~~~~~ 60 (64)
T PF13560_consen 16 SQAQLADRLGVSQSTVSRIERGRRPRPSPDTLQRLARALGVPPDE 60 (64)
T ss_dssp -HHHHHHHHTS-HHHHHHHHTTSSSS-BHHHHHHHHHHTT--HHH
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 7899999999999999999999994 887 88888887654
No 120
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=95.94 E-value=0.037 Score=47.68 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=54.7
Q ss_pred ceEEEEEEecCCcccCcceeeccc-----eEEEEE-EeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278 219 DFNIHIMDFQPGDFLNVKEVHYNQ-----HGLLLL-EGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 292 (300)
Q Consensus 219 ~~~~~~~tl~PG~~~p~~~~H~~e-----h~~~iL-~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 292 (300)
-..++...+.||+.|.. |..+.. |.-.+. .....++++|+.+..++|.++++..-.+|+..|.|+++ +.+++
T Consensus 79 ~~~~~~s~l~pg~~I~p-H~d~~~~~lR~Hl~L~~p~~~~~~~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~-Rv~L~ 156 (163)
T PF05118_consen 79 LGRVRFSRLPPGTHIKP-HRDPTNLRLRLHLPLIVPNPGCYIRVGGETRHWREGECWVFDDSFEHEVWNNGDED-RVVLI 156 (163)
T ss_dssp CEEEEEEEEECTEEEEE-E-SS-TTEEEEEEEEC--STTEEEEETTEEEB--CTEEEEE-TTS-EEEEESSSS--EEEEE
T ss_pred hhhEEEEEECCCCEECC-eeCCCCcceEEEEEEEcCCCCeEEEECCeEEEeccCcEEEEeCCEEEEEEeCCCCC-EEEEE
Confidence 35688889999999986 455443 555556 47899999999999999999999999999999999764 55555
Q ss_pred eecCC
Q 022278 293 KDVNR 297 (300)
Q Consensus 293 kd~nr 297 (300)
=|+-|
T Consensus 157 vD~~h 161 (163)
T PF05118_consen 157 VDFWH 161 (163)
T ss_dssp EEEE-
T ss_pred EEeec
Confidence 66544
No 121
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=95.90 E-value=0.025 Score=45.07 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=48.1
Q ss_pred EEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEE
Q 022278 224 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 292 (300)
Q Consensus 224 ~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 292 (300)
-++++||+.+-..-...++..+|+++|.+ .++|+..++.+|+.+++.++..=.+.+.+ ++.+||++
T Consensus 3 di~l~~g~~~~~~~~~~~~~~iyv~~G~~--~v~~~~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll 68 (104)
T PF05726_consen 3 DIKLEPGASFTLPLPPGHNAFIYVLEGSV--EVGGEEDPLEAGQLVVLEDGDEIELTAGE-EGARFLLL 68 (104)
T ss_dssp EEEE-TT-EEEEEEETT-EEEEEEEESEE--EETTTTEEEETTEEEEE-SECEEEEEESS-SSEEEEEE
T ss_pred EEEECCCCEEEeecCCCCEEEEEEEECcE--EECCCcceECCCcEEEECCCceEEEEECC-CCcEEEEE
Confidence 36789999976544556788899999995 55776699999999999977666777765 77888775
No 122
>PRK09726 antitoxin HipB; Provisional
Probab=95.81 E-value=0.0012 Score=51.14 Aligned_cols=43 Identities=2% Similarity=-0.004 Sum_probs=38.7
Q ss_pred cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278 27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~ 69 (300)
-|++++|+++|+|++.+|++|||...|+. |+++||++...+..
T Consensus 26 ltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~~~~~ 73 (88)
T PRK09726 26 WTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDA 73 (88)
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcchhcc
Confidence 47899999999999999999999988887 89999999888554
No 123
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.55 E-value=0.065 Score=43.27 Aligned_cols=61 Identities=20% Similarity=0.108 Sum_probs=49.0
Q ss_pred CcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEeCC--CCceeEEecCC-ccEEEE
Q 022278 230 GDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAP--FVPQWYAALGK-TRTRYL 290 (300)
Q Consensus 230 G~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~--~~~H~~~n~G~-e~~~fi 290 (300)
+.-++.|.|...|-.-||++|+....+. |....+++||+-||.+ |+.|+=.|.++ ++++.|
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~Ds~G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHRDSLGNRGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEEETTSEEEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEECCCCCeeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 5556777788888888999999999976 6778999999999965 57899999988 888776
No 124
>PF12852 Cupin_6: Cupin
Probab=95.46 E-value=0.051 Score=47.21 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=36.4
Q ss_pred eEEEEEEeeEEEEeCC--EEEEccCCcEEEeCCCCceeEEecCC
Q 022278 243 HGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAALGK 284 (300)
Q Consensus 243 h~~~iL~G~G~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n~G~ 284 (300)
.-.+|++|++.+.++| +...+++||++++|.|.+|.+....+
T Consensus 37 ~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 37 SFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred EEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCCCCC
Confidence 3578999999999876 89999999999999999999954433
No 125
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=95.41 E-value=0.028 Score=48.55 Aligned_cols=63 Identities=21% Similarity=0.429 Sum_probs=49.6
Q ss_pred EEEEEecCCcccCc---------ceeeccceEEEEEEeeEEEEeC---CEE--EEccCCcEEEeCCCCceeEEecCC
Q 022278 222 IHIMDFQPGDFLNV---------KEVHYNQHGLLLLEGQGIYRLG---DSW--YPVQAGDVLWMAPFVPQWYAALGK 284 (300)
Q Consensus 222 ~~~~tl~PG~~~p~---------~~~H~~eh~~~iL~G~G~~~~~---g~~--~~v~~GD~i~~~~~~~H~~~n~G~ 284 (300)
|.++++-|+-.-.+ .|-|..|++=|||+|.|-+.+. +.| ..|++||.|++|+|.-|-|.-+-+
T Consensus 65 ~d~~~~~~e~~~nfdeKvk~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~ 141 (179)
T KOG2107|consen 65 MDICTVCPETLPNFDEKVKSFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPS 141 (179)
T ss_pred eeEEEEchhhcccHHHHHHHHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCch
Confidence 45677777665444 4678899999999999988754 566 467999999999999999876543
No 126
>PF12852 Cupin_6: Cupin
Probab=95.38 E-value=0.034 Score=48.33 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=37.7
Q ss_pred ceEEEEEEECEEEEEEcCC--cEEEeccCcEEEeCCCCceEEee
Q 022278 124 VERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 124 gEEf~yVLeG~v~l~v~gg--~~~~L~~Gds~yfpa~~~H~~~N 165 (300)
.-.|.+|++|+..+.+ ++ +...|.+||.+.+|.+.+|.+..
T Consensus 35 ~~~fh~V~~G~~~l~~-~~~~~~~~L~~GDivllp~g~~H~l~~ 77 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRV-PGGGEPIRLEAGDIVLLPRGTAHVLSS 77 (186)
T ss_pred ceEEEEEECCeEEEEE-cCCCCeEEecCCCEEEEcCCCCeEeCC
Confidence 4789999999999998 54 78999999999999999999985
No 127
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=95.32 E-value=0.23 Score=43.87 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=34.5
Q ss_pred CceEEEEEEECEEEEEE--cCC----cE--EEeccCcEEEeCCCCceEEee--CCeEEEE
Q 022278 123 DVERFIFVVQGSAMLTN--ASG----VS--SKLMVDSYTYLPPNFAHSLRA--EGSATLV 172 (300)
Q Consensus 123 ~gEEf~yVLeG~v~l~v--~gg----~~--~~L~~Gds~yfpa~~~H~~~N--~~~a~vl 172 (300)
..-|+.+||+|+..+.+ .++ +. ..+++||.+++||+-.|+..| +++..+.
T Consensus 82 ~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~ 141 (182)
T PF06560_consen 82 SYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFA 141 (182)
T ss_dssp T--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECCCCcEEEE
Confidence 36899999999998876 233 33 588999999999999999999 5554443
No 128
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.31 E-value=0.002 Score=61.14 Aligned_cols=42 Identities=10% Similarity=-0.046 Sum_probs=39.9
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~ 69 (300)
|+++||+++|+|+++||++|||...|+. |+++||++...++.
T Consensus 43 tq~~lA~~~gvs~~~i~~~E~g~~~ps~~~l~~ia~~l~v~~~~l~~ 89 (309)
T PRK08154 43 SRKVLAQASGVSERYLAQLESGQGNVSILLLRRVARALGCSLADLLG 89 (309)
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHhC
Confidence 8899999999999999999999999998 99999999998875
No 129
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=95.15 E-value=0.13 Score=44.99 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=49.5
Q ss_pred CcEEEEEEEEcCCCcCCCCCCCc-eEEEEEEECEEEEEE---cCC---------cEEEeccCcEEEeCCCCceEEeeC--
Q 022278 102 SHFVMYLANMQENARSALPPHDV-ERFIFVVQGSAMLTN---ASG---------VSSKLMVDSYTYLPPNFAHSLRAE-- 166 (300)
Q Consensus 102 ~~f~~~lv~l~PG~~~~~~~h~g-EEf~yVLeG~v~l~v---~gg---------~~~~L~~Gds~yfpa~~~H~~~N~-- 166 (300)
..|+.+++.-.||..++.|.|++ .=++.|++|+++-+. .++ +...+..|....++++--|+++|.
T Consensus 73 ~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~ 152 (175)
T PF05995_consen 73 ERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSG 152 (175)
T ss_dssp CT-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-S
T ss_pred CCeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCC
Confidence 57999999999999999998875 667889999987653 233 234466777777899999999872
Q ss_pred -Ce-EEEEEEEeec
Q 022278 167 -GS-ATLVVFERRY 178 (300)
Q Consensus 167 -~~-a~vl~v~~~y 178 (300)
++ +.+.++..++
T Consensus 153 ~~~avSLHvYspPl 166 (175)
T PF05995_consen 153 DEPAVSLHVYSPPL 166 (175)
T ss_dssp SS-EEEEEEEES--
T ss_pred CCCEEEEEEcCCCh
Confidence 32 3455554444
No 130
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=95.13 E-value=0.12 Score=49.91 Aligned_cols=65 Identities=15% Similarity=0.295 Sum_probs=57.5
Q ss_pred CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcC-CcEEEeccCcEEEeCCCCceEEeeCC
Q 022278 102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRAEG 167 (300)
Q Consensus 102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~g-g~~~~L~~Gds~yfpa~~~H~~~N~~ 167 (300)
..|+...+++++|.++..+.-++-..+.|++|+.++.. + +....++.||.+|+||+.+-.++...
T Consensus 331 ~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~-~t~~~~~v~rG~V~fI~a~~~i~~~~~s 396 (411)
T KOG2757|consen 331 EEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKT-DTDSKILVNRGDVLFIPANHPIHLSSSS 396 (411)
T ss_pred cceeEEEeecCCCceEEeecCCCceEEEEEecceEEec-CCCCceeeccCcEEEEcCCCCceeeccC
Confidence 48999999999977766667888999999999999998 7 88999999999999999998888633
No 131
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=95.07 E-value=0.066 Score=49.71 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=38.9
Q ss_pred eEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCcc
Q 022278 243 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR 286 (300)
Q Consensus 243 h~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~ 286 (300)
..+++++|++.+..+|..+.++|||+++++++.||.+...++..
T Consensus 73 ~l~~~~~G~~~~~~~g~~~~l~~G~~~l~~~~~p~~~~~~~~~~ 116 (302)
T PRK09685 73 FTVFQLSGHAIIEQDDRQVQLAAGDITLIDASRPCSIYPQGLSE 116 (302)
T ss_pred EEEEEecceEEEEECCeEEEEcCCCEEEEECCCCcEeecCCCce
Confidence 35677999999999999999999999999999999988766543
No 132
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=95.01 E-value=0.0022 Score=53.42 Aligned_cols=42 Identities=12% Similarity=-0.031 Sum_probs=37.9
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~ 69 (300)
|+.++|+++|+|.+.+|++|||...|+. |+++||++...++.
T Consensus 20 tq~~lA~~~gvs~~~is~~E~g~~~p~~~~l~~la~~l~vs~~~l~~ 66 (135)
T PRK09706 20 SQRSLAKAVKVSHVSISQWERDETEPTGKNLFALAKALQCSPTWLLF 66 (135)
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence 6789999999999999999999999986 89999999887653
No 133
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=94.99 E-value=0.19 Score=47.97 Aligned_cols=65 Identities=17% Similarity=0.324 Sum_probs=51.0
Q ss_pred CCCCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCC-CceEEeeC
Q 022278 99 AMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN-FAHSLRAE 166 (300)
Q Consensus 99 ~~g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~-~~H~~~N~ 166 (300)
.....|..+...+.. ......+.+=..++|++|+.++.. +++++.|++|+++++|++ .+-.++.+
T Consensus 237 v~~~~F~l~~~~i~~--~~~~~~~~~~~il~v~eG~~~l~~-~~~~~~l~~G~s~~ipa~~~~~~i~g~ 302 (312)
T COG1482 237 VPNEDFALYKWDISG--TAEFIKQESFSILLVLEGEGTLIG-GGQTLKLKKGESFFIPANDGPYTIEGE 302 (312)
T ss_pred ccccceEEEEEeccC--hhhhccCCCcEEEEEEcCeEEEec-CCEEEEEcCCcEEEEEcCCCcEEEEec
Confidence 445678888887764 122224568899999999999998 999999999999999999 66666653
No 134
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=94.90 E-value=0.18 Score=46.90 Aligned_cols=79 Identities=14% Similarity=0.305 Sum_probs=60.1
Q ss_pred eeCCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC-EEEEccCC--------cEEEeCCCCceeEE
Q 022278 211 LLPQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD-SWYPVQAG--------DVLWMAPFVPQWYA 280 (300)
Q Consensus 211 l~p~~~~-~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g-~~~~v~~G--------D~i~~~~~~~H~~~ 280 (300)
..|+..+ .-+.+.+++|++|..... .....|=++.+|+|++.+..|| +++.+..- |.+|++.|..=-+.
T Consensus 17 i~~~~~g~~~~~~~~l~L~~g~~~~~-~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~ 95 (261)
T PF04962_consen 17 ITPENAGWMYMGFGVLRLEAGESLEF-ELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIF 95 (261)
T ss_dssp CTCCCCCCCCBECCCEEEECCHCCCC-CCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEE
T ss_pred ECCCccCccccceEEEEecCCCEEec-cCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEE
Confidence 4455444 356778999999999876 5777788899999999999999 99999998 99999999998888
Q ss_pred ecCCccEEEEEE
Q 022278 281 ALGKTRTRYLLY 292 (300)
Q Consensus 281 n~G~e~~~fi~~ 292 (300)
+..+ ++|.+.
T Consensus 96 a~~~--ae~~~~ 105 (261)
T PF04962_consen 96 ASTD--AEFAVC 105 (261)
T ss_dssp ESST--EEEEEE
T ss_pred EcCC--CEEEEE
Confidence 8544 555544
No 135
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=94.85 E-value=0.34 Score=48.08 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=43.9
Q ss_pred CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEE
Q 022278 121 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE 175 (300)
Q Consensus 121 ~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~ 175 (300)
..+|++.+||-+|++.+.- +=-...+++||++.+|.|+.+++.-.+++|.++++
T Consensus 143 NaDGD~Li~~q~G~l~l~T-e~G~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E 196 (424)
T PF04209_consen 143 NADGDELIFPQQGSLRLET-EFGRLDVRPGDYVVIPRGTRFRVELPGPARGYIIE 196 (424)
T ss_dssp ESSEEEEEEEEES-EEEEE-TTEEEEE-TTEEEEE-TT--EEEE-SSSEEEEEEE
T ss_pred cCCCCEEEEEEECCEEEEe-cCeeEEEcCCeEEEECCeeEEEEEeCCCceEEEEE
Confidence 5899999999999999997 65678899999999999999999867999999998
No 136
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=94.69 E-value=0.089 Score=44.29 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=49.0
Q ss_pred CCcCCCC--CCCceEEEEEEECEEEEEEc--CCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccc
Q 022278 114 NARSALP--PHDVERFIFVVQGSAMLTNA--SGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYAS 180 (300)
Q Consensus 114 G~~~~~~--~h~gEEf~yVLeG~v~l~v~--gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~ 180 (300)
|+....| +.+..|.+-|++|+..+.++ +|++..++.||.+.+|+|+.|. ++...+.|.++ -.|.|
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~-rl~sS~DF~Vv-GaYp~ 120 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHC-RLHSSADFQVV-GAYPP 120 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCcccc-cccCCCCeEEE-cccCC
Confidence 4444444 34568999999999999992 4678999999999999999995 34555666665 45655
No 137
>PRK10579 hypothetical protein; Provisional
Probab=94.29 E-value=0.25 Score=39.00 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=45.8
Q ss_pred EcCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEeccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278 111 MQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV 173 (300)
Q Consensus 111 l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~ 173 (300)
|.||. .+. .-..-|..-|++|++++.+ .| +..+..+|+++.+|++....++.++.+..++
T Consensus 30 m~pGe-y~F-~T~~~E~MeivsG~l~V~L-pg~~ew~~~~aG~sF~VpanssF~l~v~~~t~Y~C 91 (94)
T PRK10579 30 MAEGE-YTF-STAEPEEMTVISGALNVLL-PGATDWQVYEAGEVFNVPGHSEFHLQVAEPTSYLC 91 (94)
T ss_pred EeeeE-EEE-cCCCcEEEEEEeeEEEEEC-CCCcccEEeCCCCEEEECCCCeEEEEECcceeeEE
Confidence 45664 222 2344678889999999999 54 4589999999999999999999766665554
No 138
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=94.28 E-value=0.44 Score=43.61 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=73.9
Q ss_pred CceEE-EEEEECEEEEEEcCCcEEEeccCcEEEeCCC-CceEEee---CCeEEEEEEEeeccccCCCCcceeeccCCCCC
Q 022278 123 DVERF-IFVVQGSAMLTNASGVSSKLMVDSYTYLPPN-FAHSLRA---EGSATLVVFERRYASLENHITEQIVGSTDKQP 197 (300)
Q Consensus 123 ~gEEf-~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~-~~H~~~N---~~~a~vl~v~~~y~~~~g~~p~~~~~~~~d~~ 197 (300)
+..|. +.=+-|..++.+ ||++|+|...|.+|+-.| ..-.|.+ ..+|++..++ .|+.-.-|...+. .+|..
T Consensus 74 eRRElgiINIG~~G~i~v-~g~~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~s---apAH~s~ptk~~~-~~~a~ 148 (278)
T COG3717 74 ERRELGIINIGGPGTITV-DGQEYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYVS---APAHTSYPTKKVT-LAEAK 148 (278)
T ss_pred eeeeeeEEeeCCCceEEE-CCEEEEeccccEEEEecCccceEEeccCCCCcceEEEee---ccccccCCccccc-HHHcC
Confidence 33444 455667889999 999999999999999888 5666775 4688998884 3333333444444 44444
Q ss_pred CcccCC----ceeEEEEee-CCCCCc-ceEEEEEEecCCcc---cCcceeec
Q 022278 198 LLETPG----EVFQLRKLL-PQAVPF-DFNIHIMDFQPGDF---LNVKEVHY 240 (300)
Q Consensus 198 ~~~~~g----~~~~~~~l~-p~~~~~-~~~~~~~tl~PG~~---~p~~~~H~ 240 (300)
+..... ...++-+.+ |+-... ...|-...|+||.- +|. |.|.
T Consensus 149 p~~lG~~~tSN~RTI~kyihpd~~~scQL~mG~T~L~pgsvWNTMP~-H~Hd 199 (278)
T COG3717 149 PVTLGDDATSNRRTINKYIHPDVLESCQLSMGLTMLAPGSVWNTMPC-HVHD 199 (278)
T ss_pred ccccccccccccceeeeeeccchhhhhhhhhcceeecCCCccccCCc-cccc
Confidence 444321 333555555 766554 47788899999975 775 5665
No 139
>PLN02288 mannose-6-phosphate isomerase
Probab=94.27 E-value=0.12 Score=50.90 Aligned_cols=58 Identities=12% Similarity=0.257 Sum_probs=46.2
Q ss_pred CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE--EEeccCcEEEeCCCCc
Q 022278 102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS--SKLMVDSYTYLPPNFA 160 (300)
Q Consensus 102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~--~~L~~Gds~yfpa~~~ 160 (300)
..|....+++.+|.........+-..++|++|++++.. ++.+ ..|++|+++|+|++..
T Consensus 332 ~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~-~~~~~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 332 DEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLST-GSSEDGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred cceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEec-CCccceEEEeceeEEEEeCCCc
Confidence 56888888887775433334678899999999999987 6655 6799999999999765
No 140
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=94.16 E-value=0.31 Score=38.50 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=43.1
Q ss_pred EEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEeccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278 109 ANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV 173 (300)
Q Consensus 109 v~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg--~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~ 173 (300)
-.|.||.-. . .-...|..-|++|++++.+ .| +..+..+|+++-+|++....++-.+++..++
T Consensus 28 GVm~pGeY~-F-~T~~~E~M~vvsG~l~V~l-pg~~ew~~~~aGesF~VpanssF~v~v~~~~~Y~C 91 (94)
T PF06865_consen 28 GVMLPGEYT-F-GTSAPERMEVVSGELEVKL-PGEDEWQTYSAGESFEVPANSSFDVKVKEPTAYLC 91 (94)
T ss_dssp EEE-SECEE-E-EESS-EEEEEEESEEEEEE-TT-SS-EEEETT-EEEE-TTEEEEEEESS-EEEEE
T ss_pred EEEeeeEEE-E-cCCCCEEEEEEEeEEEEEc-CCCcccEEeCCCCeEEECCCCeEEEEECcceeeEE
Confidence 345677422 1 2345788899999999999 44 4689999999999999999999877666655
No 141
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=93.99 E-value=0.0067 Score=40.04 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=34.3
Q ss_pred cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCccee
Q 022278 27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSV 66 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~ 66 (300)
+|+.++|+++++|.+.+|++|++...|+. |.+.+|++...
T Consensus 11 ~s~~~la~~~~i~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 55 (56)
T smart00530 11 LTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALGVSLDE 55 (56)
T ss_pred CCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCChhh
Confidence 57889999999999999999999987665 88888887654
No 142
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.96 E-value=0.17 Score=46.94 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=36.8
Q ss_pred ceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee
Q 022278 124 VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 124 gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N 165 (300)
.--++++++|.+.+.. +|+++.+.+||.+.++++.+|.+..
T Consensus 71 ~~~l~~~~~G~~~~~~-~g~~~~l~~G~~~l~~~~~p~~~~~ 111 (302)
T PRK09685 71 HFFTVFQLSGHAIIEQ-DDRQVQLAAGDITLIDASRPCSIYP 111 (302)
T ss_pred cEEEEEEecceEEEEE-CCeEEEEcCCCEEEEECCCCcEeec
Confidence 3446678999999999 9999999999999999999999875
No 143
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=93.96 E-value=0.0056 Score=45.57 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=37.5
Q ss_pred cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278 27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~ 69 (300)
-|++++|+++|+|++.+|++|+|...|+. |++.+|++...+..
T Consensus 19 ~t~~~lA~~~gis~~tis~~~~g~~~~~~~~~~~l~~~l~v~~~~l~~ 66 (78)
T TIGR02607 19 LSIRALAKALGVSRSTLSRIVNGRRGITADMALRLAKALGTSPEFWLN 66 (78)
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 37899999999999999999999988777 88999988776654
No 144
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.06 E-value=0.53 Score=40.49 Aligned_cols=77 Identities=6% Similarity=0.057 Sum_probs=51.1
Q ss_pred cEEEEEEEEcCCCcCCCCCCC---ce--EEEEEE-ECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEE
Q 022278 103 HFVMYLANMQENARSALPPHD---VE--RFIFVV-QGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFE 175 (300)
Q Consensus 103 ~f~~~lv~l~PG~~~~~~~h~---gE--Ef~yVL-eG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~ 175 (300)
.....+..|.||+.-.+|... .- ++..+. .+.+.+.+ +|+++..++|+.++|....+|...| ....|++.+.
T Consensus 79 ~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v-~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L~v 157 (163)
T PF05118_consen 79 LGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV-GGETRHWREGECWVFDDSFEHEVWNNGDEDRVVLIV 157 (163)
T ss_dssp CEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE-TTEEEB--CTEEEEE-TTS-EEEEESSSS-EEEEEE
T ss_pred hhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE-CCeEEEeccCcEEEEeCCEEEEEEeCCCCCEEEEEE
Confidence 345678888999877666211 12 334444 36689999 9999999999999999999999999 5567877776
Q ss_pred eeccc
Q 022278 176 RRYAS 180 (300)
Q Consensus 176 ~~y~~ 180 (300)
.-..|
T Consensus 158 D~~hP 162 (163)
T PF05118_consen 158 DFWHP 162 (163)
T ss_dssp EEE-T
T ss_pred EeecC
Confidence 55443
No 145
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=92.98 E-value=0.67 Score=45.62 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=44.5
Q ss_pred cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEE
Q 022278 103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL 163 (300)
Q Consensus 103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~ 163 (300)
.|....+++.++ .... ..++-+.++|++|++++.. +++++.|++|+++++|++.....
T Consensus 320 ~F~~~~~~l~~~-~~~~-~~~~~~Illv~~G~~~i~~-~~~~~~l~~G~~~fipa~~~~~~ 377 (389)
T PRK15131 320 DFAFSLHDLSDQ-PTTL-SQQSAAILFCVEGEAVLWK-GEQQLTLKPGESAFIAANESPVT 377 (389)
T ss_pred CcEEEEEEECCc-eEEe-cCCCcEEEEEEcceEEEEe-CCeEEEECCCCEEEEeCCCccEE
Confidence 577777777543 1111 2356689999999999997 88899999999999999876543
No 146
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=92.72 E-value=0.8 Score=43.27 Aligned_cols=60 Identities=13% Similarity=0.315 Sum_probs=46.0
Q ss_pred CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCc-eEEe
Q 022278 102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLR 164 (300)
Q Consensus 102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~-H~~~ 164 (300)
..|....+++... ......++-..++|++|++++.. ++.+..|++|+++++||+.. -.++
T Consensus 233 ~~F~~~~~~~~~~--~~~~~~~~~~il~v~~G~~~i~~-~~~~~~l~~G~~~~ipa~~~~~~i~ 293 (302)
T TIGR00218 233 EYFSVYKWDISGK--AEFIQQQSALILSVLEGSGRIKS-GGKTLPLKKGESFFIPAHLGPFTIE 293 (302)
T ss_pred CCeEEEEEEeCCc--eeeccCCCcEEEEEEcceEEEEE-CCEEEEEecccEEEEccCCccEEEE
Confidence 4677777777533 11223557788999999999998 88999999999999999985 4443
No 147
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=92.52 E-value=0.011 Score=43.94 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=37.5
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~ 69 (300)
||++||++.|+|+--|.++|+|.-.||+ |+..++.+..++|.
T Consensus 16 tQ~elA~~vgVsRQTi~~iEkgky~Psl~La~kia~~f~~~iedIF~ 62 (68)
T COG1476 16 TQEELAKLVGVSRQTIIAIEKGKYNPSLELALKIARVFGKTIEDIFQ 62 (68)
T ss_pred CHHHHHHHcCcCHHHHHHHHcCCCCchHHHHHHHHHHhCCCHHHHHh
Confidence 7899999999999999999999999998 88888877766653
No 148
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=92.36 E-value=0.56 Score=39.05 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=44.5
Q ss_pred CceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEee
Q 022278 123 DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR 177 (300)
Q Consensus 123 ~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~ 177 (300)
+.=-+.+.++|.+.+.. +|++..+.+|+.+.++++.++.++.....+.+++.=+
T Consensus 54 ~~~~l~~~~~G~~~~~~-~g~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~ip 107 (172)
T PF14525_consen 54 DHYLLVLPLSGSARIEQ-GGREVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRIP 107 (172)
T ss_pred CEEEEEEEccCCEEEEE-CCEEEEEcCCeEEEEcCCCCEEEEECCCccEEEEEEC
Confidence 34556788999999999 9999999999999999999999987655565555333
No 149
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=92.30 E-value=0.37 Score=45.95 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=39.6
Q ss_pred ecCCcccCcceeeccceEEEEEEeeEE--EEeC-----------------------CEEEEccCCcEEEeCCCCceeEEe
Q 022278 227 FQPGDFLNVKEVHYNQHGLLLLEGQGI--YRLG-----------------------DSWYPVQAGDVLWMAPFVPQWYAA 281 (300)
Q Consensus 227 l~PG~~~p~~~~H~~eh~~~iL~G~G~--~~~~-----------------------g~~~~v~~GD~i~~~~~~~H~~~n 281 (300)
+-|+++-++ --|...|..+|+...|. -++- .....++|||++|+|+|..|.-.+
T Consensus 120 ~tp~g~~g~-~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~ 198 (319)
T PF08007_consen 120 LTPPGSQGF-GPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVT 198 (319)
T ss_dssp EETSSBEES-ECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEE
T ss_pred ecCCCCCCc-cCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCC
Confidence 457776665 57777788888887772 1121 236889999999999999999999
Q ss_pred cCCccEEE
Q 022278 282 LGKTRTRY 289 (300)
Q Consensus 282 ~G~e~~~f 289 (300)
.+ ..+.+
T Consensus 199 ~~-~S~hl 205 (319)
T PF08007_consen 199 TD-PSLHL 205 (319)
T ss_dssp SS--EEEE
T ss_pred CC-CceEE
Confidence 98 44443
No 150
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=92.30 E-value=0.92 Score=44.99 Aligned_cols=66 Identities=15% Similarity=0.030 Sum_probs=53.0
Q ss_pred cCCCcC-CCC--CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeec
Q 022278 112 QENARS-ALP--PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRY 178 (300)
Q Consensus 112 ~PG~~~-~~~--~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y 178 (300)
.++.+. ... ..+||+.+|+-+|++.+.- +=-...+++||++.+|.|+.+++.-.+++|.++++.--
T Consensus 133 ~~~~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 133 LCNASMENRAFYNADGDFLIVPQQGALLITT-EFGRLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred eCCCCcccceeeccCCCEEEEEEeCcEEEEE-eccceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 455554 222 6899999999999999986 54467899999999999999999866789988876543
No 151
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=92.30 E-value=0.49 Score=46.98 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=52.2
Q ss_pred cCCCcC-CCC--CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEEe
Q 022278 112 QENARS-ALP--PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFER 176 (300)
Q Consensus 112 ~PG~~~-~~~--~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~ 176 (300)
.++.+. ... ..+||+.+|+-+|++.+.- +=-...+++||++++|.|+.+++.- ++++|.++++.
T Consensus 139 ~~n~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~ 206 (438)
T PRK05341 139 AANRSMQDRYFYNADGELLIVPQQGRLRLAT-ELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVCEN 206 (438)
T ss_pred eCCCCcccceeecCCCCEEEEEEeCCEEEEE-eccceEecCCCEEEEcCccEEEEecCCCCeeEEEEEe
Confidence 455554 222 6899999999999999986 5446789999999999999999984 77999988864
No 152
>PLN02658 homogentisate 1,2-dioxygenase
Probab=92.20 E-value=0.82 Score=45.42 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=53.4
Q ss_pred cCCCcCCCC---CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEEee
Q 022278 112 QENARSALP---PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERR 177 (300)
Q Consensus 112 ~PG~~~~~~---~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~~ 177 (300)
.++.+.... ..+||+.+++-+|++.+.- .=-.-.+++||++.+|.|+.+++.= ++++|.++++.-
T Consensus 132 ~~n~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~ 200 (435)
T PLN02658 132 VANKSMDDCAFCNADGDFLIVPQQGRLWIKT-ELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIF 200 (435)
T ss_pred eCCCCCccceeecCCCCEEEEEEeCCEEEEE-eccceEecCCCEEEecCccEEEEecCCCCeeEEEEeec
Confidence 455554222 6899999999999999986 5445789999999999999999984 789999988766
No 153
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=92.15 E-value=0.16 Score=39.99 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=21.2
Q ss_pred EEEEccCCcEEEeCCCCceeEEecCCc
Q 022278 259 SWYPVQAGDVLWMAPFVPQWYAALGKT 285 (300)
Q Consensus 259 ~~~~v~~GD~i~~~~~~~H~~~n~G~e 285 (300)
....-+|||+|+++||..|+..|.|+.
T Consensus 81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 81 YRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccceECCCCEEEECCCceEEEEeCCce
Confidence 357789999999999999999999974
No 154
>COG1741 Pirin-related protein [General function prediction only]
Probab=92.09 E-value=0.27 Score=46.15 Aligned_cols=66 Identities=15% Similarity=0.041 Sum_probs=52.0
Q ss_pred EEEecCCcccCcceeeccceEEEEEEeeEEEEeC-CEEEEccCCcEEEeCC--CCceeEEec--CCccEEE
Q 022278 224 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAP--FVPQWYAAL--GKTRTRY 289 (300)
Q Consensus 224 ~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~-g~~~~v~~GD~i~~~~--~~~H~~~n~--G~e~~~f 289 (300)
--.+.||.-++.|.|-..|-.-|+|+|+...++. |..-.++|||+-||.+ |+-|+=.|. -++++..
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~ 118 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHRDSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHG 118 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEeecCCceeeecccceeEEcCCCceeecccCCccCCCccce
Confidence 3349999988887666888788999999999987 5788999999999976 577887775 2335543
No 155
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=92.07 E-value=0.44 Score=40.67 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=34.0
Q ss_pred cCCcccCcceeeccceEEEEEEeeEEEEe--CC--EEEEccCCcEEEeCCCCceeEEecC
Q 022278 228 QPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GD--SWYPVQAGDVLWMAPFVPQWYAALG 283 (300)
Q Consensus 228 ~PG~~~p~~~~H~~eh~~~iL~G~G~~~~--~g--~~~~v~~GD~i~~~~~~~H~~~n~G 283 (300)
-|.....| |-..-||-+|-++|...+.+ +| +..++++||+.++|+++||+-+-..
T Consensus 41 GPN~R~Dy-Hine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~ 99 (151)
T PF06052_consen 41 GPNQRTDY-HINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPA 99 (151)
T ss_dssp SSB--SSE-EE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-T
T ss_pred CCCCCCcc-ccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCC
Confidence 45555555 34455588999999987664 44 6788999999999999999766543
No 156
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=91.31 E-value=0.4 Score=41.54 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=40.1
Q ss_pred CCCCCCceEEEEEEECEEEEEE--cCCcE--EEeccCcEEEeCCCCceEEee
Q 022278 118 ALPPHDVERFIFVVQGSAMLTN--ASGVS--SKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 118 ~~~~h~gEEf~yVLeG~v~l~v--~gg~~--~~L~~Gds~yfpa~~~H~~~N 165 (300)
+.|.|.-||.-|+++|..-..+ .+++. .-+++||.+.+|||+-|++.-
T Consensus 87 EEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTt 138 (179)
T KOG2107|consen 87 EEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTT 138 (179)
T ss_pred HHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeec
Confidence 4457999999999999998877 23443 578999999999999999983
No 157
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=91.06 E-value=1.8 Score=35.89 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=37.8
Q ss_pred EEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCc
Q 022278 244 GLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT 285 (300)
Q Consensus 244 ~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e 285 (300)
..+.++|.+.+..+|....+.|||+++..++.+..+...++-
T Consensus 58 l~~~~~G~~~~~~~g~~~~~~pg~~~l~d~~~~~~~~~~~~~ 99 (172)
T PF14525_consen 58 LVLPLSGSARIEQGGREVELAPGDVVLLDPGQPYRLEFSAGC 99 (172)
T ss_pred EEEEccCCEEEEECCEEEEEcCCeEEEEcCCCCEEEEECCCc
Confidence 457799999999999999999999999999999999876543
No 158
>PRK10072 putative transcriptional regulator; Provisional
Probab=90.48 E-value=0.025 Score=44.87 Aligned_cols=39 Identities=15% Similarity=0.048 Sum_probs=34.4
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh----hhcccCCccee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPGFTRSV 66 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg~trs~ 66 (300)
|+.++|+++|+|++-+|+.|+|.+.|+. ++.+|+.++..
T Consensus 48 TQ~elA~~lGvS~~TVs~WE~G~r~P~~~~l~Ll~~L~~~P~~ 90 (96)
T PRK10072 48 KIDDFARVLGVSVAMVKEWESRRVKPSSAELKLMRLIQANPAL 90 (96)
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhhCHHH
Confidence 5789999999999999999999999997 77888877643
No 159
>PRK11396 hypothetical protein; Provisional
Probab=90.38 E-value=6.6 Score=34.98 Aligned_cols=84 Identities=13% Similarity=0.149 Sum_probs=56.8
Q ss_pred cceEEEEecCCCCCcEEEE--EEEEcCCCcCCCCCCCceEEEEEEEC-EEEEEEcCC-cEEEeccCcEEEeCCCCceEEe
Q 022278 89 NTLGAYLITPAMGSHFVMY--LANMQENARSALPPHDVERFIFVVQG-SAMLTNASG-VSSKLMVDSYTYLPPNFAHSLR 164 (300)
Q Consensus 89 ~~~~~~L~sp~~g~~f~~~--lv~l~PG~~~~~~~h~gEEf~yVLeG-~v~l~v~gg-~~~~L~~Gds~yfpa~~~H~~~ 164 (300)
|.+-.+...|.....|... +.++...|.... -.+.++.+.||+| .++|.. ++ ..+.|++++.+.|+.+..-.-+
T Consensus 19 G~TrEI~~~P~~~~dF~WRiSiA~I~~~GpFS~-FpGidR~i~lL~G~g~~L~~-~~~~~~~l~~~~p~~F~Gd~~v~a~ 96 (191)
T PRK11396 19 GETREICTFPPAKRDFYWRASIASIAANGEFSL-FPGMERIVTLLEGGEMFLES-ADRFNHTLKPLQPFAFAADQVVKAK 96 (191)
T ss_pred eEEEEEEEcCCCCCCceEEEEEEEecCCCCCCC-CCCccEEEEEEECCCEEEee-CCccceecCCCCCeEeCCCCeeEEE
Confidence 3455566667654566554 455554322211 3688999999998 799998 65 4578899999999999888777
Q ss_pred e-CCe-EEEEEE
Q 022278 165 A-EGS-ATLVVF 174 (300)
Q Consensus 165 N-~~~-a~vl~v 174 (300)
. +.+ .+-+-+
T Consensus 97 L~~G~v~~dfNv 108 (191)
T PRK11396 97 LTAGQMSMDFNI 108 (191)
T ss_pred ECCCCeEEEEEE
Confidence 5 555 343444
No 160
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=89.47 E-value=2.6 Score=33.34 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=52.7
Q ss_pred ceeEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCE--EEEccCCcEEEeCCCCceeEEe
Q 022278 204 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS--WYPVQAGDVLWMAPFVPQWYAA 281 (300)
Q Consensus 204 ~~~~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~--~~~v~~GD~i~~~~~~~H~~~n 281 (300)
|++..+-+.-.++.. -. +=.+.||.+. =.-...|.+-|++|+..+.+.|+ |....+|+..-+|++..=.++.
T Consensus 10 GkV~S~~~~~~dG~~-~T--lGVm~pGeY~---F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v 83 (94)
T PF06865_consen 10 GKVKSITFEFADGSK-KT--LGVMLPGEYT---FGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKV 83 (94)
T ss_dssp CTEEEEEEEETTSEE-EE--EEEE-SECEE---EEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEE
T ss_pred CeEEEEEEEcCCCCc-ce--EEEEeeeEEE---EcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEE
Confidence 455555555444221 11 2233588742 22344568999999999999985 9999999999999998888888
Q ss_pred cCCccEEEEEE
Q 022278 282 LGKTRTRYLLY 292 (300)
Q Consensus 282 ~G~e~~~fi~~ 292 (300)
+++..|+|.
T Consensus 84 --~~~~~Y~C~ 92 (94)
T PF06865_consen 84 --KEPTAYLCS 92 (94)
T ss_dssp --SS-EEEEEE
T ss_pred --CcceeeEEE
Confidence 489999985
No 161
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=88.98 E-value=2.5 Score=32.46 Aligned_cols=50 Identities=8% Similarity=0.037 Sum_probs=37.8
Q ss_pred CCceEEEEEEECEEEEEEcCC------cEEEeccCcEEEeCCCCceEEee-CCeEEE
Q 022278 122 HDVERFIFVVQGSAMLTNASG------VSSKLMVDSYTYLPPNFAHSLRA-EGSATL 171 (300)
Q Consensus 122 h~gEEf~yVLeG~v~l~v~gg------~~~~L~~Gds~yfpa~~~H~~~N-~~~a~v 171 (300)
.+.-.-+-||+|++++..-++ +...+.+|+...++|...|++.- ..++++
T Consensus 23 ~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f 79 (82)
T PF09313_consen 23 AGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRF 79 (82)
T ss_dssp TTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EE
T ss_pred CCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEE
Confidence 566778899999999986233 56799999999999999999996 444554
No 162
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=88.98 E-value=1.7 Score=40.81 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=40.1
Q ss_pred ceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEec--CCccEEEEEE
Q 022278 242 QHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL--GKTRTRYLLY 292 (300)
Q Consensus 242 eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~--G~e~~~fi~~ 292 (300)
|=++..|.|+|.+..+|+.+.+.+.|.+|++.|..-..-+. ...|++|.+-
T Consensus 75 E~giV~lgG~~~V~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 75 ELGIINIGGAGTVTVDGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred EEEEEEccceEEEEECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 33678899999999999999999999999999988554442 2356666543
No 163
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=88.91 E-value=3.2 Score=36.13 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=47.0
Q ss_pred EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceE-EEEEEeeEEEE---eCCE----------EEEccCCcEEEeC
Q 022278 207 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHG-LLLLEGQGIYR---LGDS----------WYPVQAGDVLWMA 272 (300)
Q Consensus 207 ~~~~l~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~-~~iL~G~G~~~---~~g~----------~~~v~~GD~i~~~ 272 (300)
..|.++-.+. .+.+-++...||..+|. |-|...++ +.||+|+-.-. .++. ...+..|.....+
T Consensus 64 Y~r~ll~~~~--~~el~ll~W~pGq~S~I-HDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 140 (175)
T PF05995_consen 64 YTRNLLYRDE--RFELWLLCWPPGQRSPI-HDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFD 140 (175)
T ss_dssp SEEEEEEGGC--T-EEEEEEE-TT-B--E-EE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBT
T ss_pred CeEEEEecCC--CeEEEEEEeCCCCcCCC-CCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecC
Confidence 3456663333 35566899999999997 67776555 67999987543 3433 3345566666668
Q ss_pred CCCceeEEecC-CccEE
Q 022278 273 PFVPQWYAALG-KTRTR 288 (300)
Q Consensus 273 ~~~~H~~~n~G-~e~~~ 288 (300)
++--|.+.|.+ +++..
T Consensus 141 ~~~iH~v~n~s~~~~av 157 (175)
T PF05995_consen 141 PHGIHRVENPSGDEPAV 157 (175)
T ss_dssp TTBEEEEEES-SSS-EE
T ss_pred CCCeEEeccCCCCCCEE
Confidence 88899999886 66543
No 164
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.74 E-value=1.7 Score=42.06 Aligned_cols=54 Identities=19% Similarity=0.110 Sum_probs=46.2
Q ss_pred CCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee-CCeEEEEEEE
Q 022278 121 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFE 175 (300)
Q Consensus 121 ~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~ 175 (300)
..+||+.+|+-.|++.+.- +=-...+++||++.+|.|+..+++- +..++..+.+
T Consensus 143 NADge~Livpq~G~l~l~t-e~G~l~v~pgeiavIPRG~~frve~~~~~~rgy~~E 197 (427)
T COG3508 143 NADGELLIVPQQGELRLKT-ELGVLEVEPGEIAVIPRGTTFRVELKDGEARGYGCE 197 (427)
T ss_pred cCCCCEEEEeecceEEEEE-eeceEEecCCcEEEeeCCceEEEEecCCceEEEEEe
Confidence 5799999999999999986 5557899999999999999999986 5667776654
No 165
>PRK04140 hypothetical protein; Provisional
Probab=88.73 E-value=0.066 Score=51.22 Aligned_cols=104 Identities=12% Similarity=-0.013 Sum_probs=60.7
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeeeeeeEeCCC-CeeeccCCCCCcceEEEEecCCCC
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKRDHALITPE-SHVLSPLPEWTNTLGAYLITPAMG 101 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~~~av~~~e-~~~~~~~p~~~~~~~~~L~sp~~g 101 (300)
|+.+||+++|+|++.+|+.|+|...|+. |+++||++...... . +-... +......++...... -++.+...
T Consensus 141 Sq~eLA~~lGVSr~tIskyE~G~~~Ps~e~~~kLa~~Lgv~l~~~iD-~-l~~~~~~~~~~~~~~~~~~~~-~il~~l~~ 217 (317)
T PRK04140 141 SLGELASELGVSRRTISKYENGGMNASIEVAIKLEEILDVPLTKPID-I-LEKVRDDEVTPEDPEEDPFEK-EILNVLTR 217 (317)
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCChHHHHH-H-hccccccccccccCCCCHHHH-HHHHHHHH
Confidence 6799999999999999999999999998 89999987554322 1 11111 111111111111101 12222222
Q ss_pred CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEE
Q 022278 102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAML 137 (300)
Q Consensus 102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l 137 (300)
..|+++-+...|.+.-... .++-.-||.|..+.
T Consensus 218 ~G~~~~~~~~aPf~avs~~---~~e~~~vltG~~~~ 250 (317)
T PRK04140 218 LGFDVLPTKKAPFDAVSED---EKDENILLTGISEF 250 (317)
T ss_pred CCCcEEEeecCchhhhccc---CccceEEEeccccc
Confidence 3477777777777644322 22346688886665
No 166
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=87.77 E-value=1.5 Score=39.29 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=47.7
Q ss_pred ceEEEEEEecCCcccCcceeeccceEEE-EEEeeEEEEe----CC---------EE--E-------EccCCcEEEeCC--
Q 022278 219 DFNIHIMDFQPGDFLNVKEVHYNQHGLL-LLEGQGIYRL----GD---------SW--Y-------PVQAGDVLWMAP-- 273 (300)
Q Consensus 219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~-iL~G~G~~~~----~g---------~~--~-------~v~~GD~i~~~~-- 273 (300)
.|.|.+|-|.||+.||. |-|+..+++- ||.|...++- +. ++ . --.+++..++-|
T Consensus 43 ~fsi~iF~lp~g~~IPL-HDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~ 121 (200)
T PF07847_consen 43 DFSIGIFCLPPGAVIPL-HDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTS 121 (200)
T ss_pred CcEEEEEEeCCCCEeCC-CCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCC
Confidence 67888999999999998 6777776664 8999887752 10 00 0 112334444433
Q ss_pred -CCceeEEecCCccEEEE
Q 022278 274 -FVPQWYAALGKTRTRYL 290 (300)
Q Consensus 274 -~~~H~~~n~G~e~~~fi 290 (300)
|--|+|.|.+ +++-||
T Consensus 122 ggNiH~f~a~~-~p~Afl 138 (200)
T PF07847_consen 122 GGNIHEFTALT-GPCAFL 138 (200)
T ss_pred CCeeEEEEeCC-CCeEEE
Confidence 4689999998 787776
No 167
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=87.69 E-value=1.9 Score=37.44 Aligned_cols=75 Identities=23% Similarity=0.212 Sum_probs=51.6
Q ss_pred EEee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeE---EEEeCCE--------EEEccCCcEEEeCCCCc
Q 022278 209 RKLL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQG---IYRLGDS--------WYPVQAGDVLWMAPFVP 276 (300)
Q Consensus 209 ~~l~-p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G---~~~~~g~--------~~~v~~GD~i~~~~~~~ 276 (300)
+.|+ -++.++ +.+-.+|+.||.-.|. |.|.+---.=||.|.= +|.++++ ..-..+|.+- +.||.-
T Consensus 62 ~~LLh~d~~gf-ltV~~~t~~PG~~~p~-HnH~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdi 138 (191)
T COG5553 62 ELLLHADPQGF-LTVYHITLSPGVQYPP-HNHLMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDI 138 (191)
T ss_pred eEEEEEccccc-EEEEEEEeCCCcccCC-cccchheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCe
Confidence 4444 455556 7888999999999997 5665544555666542 4444443 4456778777 888999
Q ss_pred eeEEecCCcc
Q 022278 277 QWYAALGKTR 286 (300)
Q Consensus 277 H~~~n~G~e~ 286 (300)
|++.|+|..+
T Consensus 139 hsv~n~~sdr 148 (191)
T COG5553 139 HSVANTGSDR 148 (191)
T ss_pred eeecccCCCc
Confidence 9999888753
No 168
>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Probab=87.56 E-value=0.07 Score=35.22 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=32.4
Q ss_pred cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcce
Q 022278 27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRS 65 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs 65 (300)
.|+.++|.++++|.+.++++++|...|+. |.+.++++..
T Consensus 13 ~s~~~~a~~~~~~~~~v~~~~~g~~~~~~~~~~~i~~~~~~~~~ 56 (58)
T cd00093 13 LTQEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKALGVSLD 56 (58)
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCChh
Confidence 46778999999999999999999987776 7777776543
No 169
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=87.53 E-value=0.031 Score=39.83 Aligned_cols=42 Identities=10% Similarity=0.100 Sum_probs=30.4
Q ss_pred CCcccccccCCCCcceeeecCCC-CChhh-----hhcccCCcceeeee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPT-LSPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~-~sps~-----I~~~lg~trs~f~~ 69 (300)
|+.+||+++|+|.+-+|++=++. ..|+. |+++|++++..++.
T Consensus 12 t~~~La~~~gis~~tl~~~~~~~~~~~~~~~l~~ia~~l~~~~~el~~ 59 (63)
T PF13443_consen 12 TQKDLARKTGISRSTLSRILNGKPSNPSLDTLEKIAKALNCSPEELFE 59 (63)
T ss_dssp -HHHHHHHHT--HHHHHHHHTTT-----HHHHHHHHHHHT--HHHCTE
T ss_pred CHHHHHHHHCcCHHHHHHHHhcccccccHHHHHHHHHHcCCCHHHHhh
Confidence 78899999999999999999998 67877 99999999988765
No 170
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=87.13 E-value=2.1 Score=31.18 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=40.0
Q ss_pred EEEcCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcEEEeccCcEEEeCCCCceEEe
Q 022278 109 ANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVSSKLMVDSYTYLPPNFAHSLR 164 (300)
Q Consensus 109 v~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~gg~~~~L~~Gds~yfpa~~~H~~~ 164 (300)
++|.||.........+.+ +-|.+|.+=++. ++.+.|.|.+||++-++++..-.++
T Consensus 2 ~~L~~g~~~~lr~~~~~~-l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~ 57 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQR-LRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLS 57 (63)
T ss_pred EEeCCCceEEeEcCCCcE-EEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEE
Confidence 456777655444344444 899999999988 2245699999999999998765554
No 171
>PRK10579 hypothetical protein; Provisional
Probab=87.01 E-value=4.1 Score=32.15 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=56.9
Q ss_pred ceeEEEEeeCCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC--EEEEccCCcEEEeCCCCceeEE
Q 022278 204 EVFQLRKLLPQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYA 280 (300)
Q Consensus 204 ~~~~~~~l~p~~~~-~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g--~~~~v~~GD~i~~~~~~~H~~~ 280 (300)
|++..+-+.-.++. +..- + +.||.+. + .-...|.+=|++|+..+.|.| +|...++|+..-+|++..=.++
T Consensus 10 Gkv~S~~~~~~dG~~kTlG--V--m~pGey~-F--~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~ 82 (94)
T PRK10579 10 GKVKSIGFDSSSTGRASVG--V--MAEGEYT-F--STAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQ 82 (94)
T ss_pred CeEEEEEEEcCCCCeeEEE--E--EeeeEEE-E--cCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEE
Confidence 45555555544432 2221 2 2366632 1 223446888999999999998 7999999999999999988888
Q ss_pred ecCCccEEEEEE
Q 022278 281 ALGKTRTRYLLY 292 (300)
Q Consensus 281 n~G~e~~~fi~~ 292 (300)
. +++..|+|.
T Consensus 83 v--~~~t~Y~C~ 92 (94)
T PRK10579 83 V--AEPTSYLCR 92 (94)
T ss_pred E--CcceeeEEE
Confidence 8 478999985
No 172
>PRK02866 cyanate hydratase; Validated
Probab=86.83 E-value=0.099 Score=44.55 Aligned_cols=42 Identities=10% Similarity=0.016 Sum_probs=37.3
Q ss_pred cCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeee
Q 022278 27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYK 68 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~ 68 (300)
.|.++||+++|+|+.++.++++|+.++|. |.++|+++.....
T Consensus 19 LTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~LgL~~~~~~ 65 (147)
T PRK02866 19 LTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELLGLDEDAVA 65 (147)
T ss_pred CCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 36799999999999999999999999998 8999988877554
No 173
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=86.64 E-value=0.064 Score=43.60 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=32.9
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh----hhcccCCccee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH----LQDLPGFTRSV 66 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~----I~~~lg~trs~ 66 (300)
|+.++|+++|+|++.+|+.|+|...|+. ++..|++++..
T Consensus 80 tq~~lA~~lg~~~~tis~~e~g~~~p~~~~~~l~~~l~~~p~~ 122 (127)
T TIGR03830 80 SQREAAELLGGGVNAFSRYERGEVRPSKALDKLLRLLDKHPEL 122 (127)
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHChHH
Confidence 7899999999999999999999998875 66666666543
No 174
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=86.61 E-value=0.072 Score=40.40 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=28.4
Q ss_pred cCCcccccccCCCCcceeeecCC-CCChhh-----hhcccCCccee
Q 022278 27 CSAPSILDRETSSKPMYWKVTNP-TLSPSH-----LQDLPGFTRSV 66 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~-~~sps~-----I~~~lg~trs~ 66 (300)
=|+.++|+++|.|++-+|++||| ....|+ ++++||.....
T Consensus 32 ltQ~e~A~~lgisq~~vS~l~~g~~~~~sl~~L~~~l~aLG~~v~i 77 (80)
T PF13744_consen 32 LTQAELAERLGISQPRVSRLENGKIDDFSLDTLLRYLEALGGRVEI 77 (80)
T ss_dssp --HHHHHHHHTS-HHHHHHHHTT-GCC--HHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHCCChhHHHHHHcCcccCCCHHHHHHHHHHcCCeEEE
Confidence 37889999999999999999996 456665 77777765543
No 175
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.24 E-value=2.6 Score=32.66 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=37.7
Q ss_pred eEEEEEEECEEEEEE-cCCcEEEeccCcEEEeCCCCceEEeeCCeEEE
Q 022278 125 ERFIFVVQGSAMLTN-ASGVSSKLMVDSYTYLPPNFAHSLRAEGSATL 171 (300)
Q Consensus 125 EEf~yVLeG~v~l~v-~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~v 171 (300)
-|..-|+.|.+++.+ ++++..+..+|+.+.+|++....++-.++...
T Consensus 42 ~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVaeat~Y 89 (94)
T COG3123 42 PEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVAEATSY 89 (94)
T ss_pred ceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEeeeeeh
Confidence 456779999999998 34567999999999999999998885444433
No 176
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=86.19 E-value=2.9 Score=36.66 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=40.4
Q ss_pred CCcccCcceeecc-ceEEEEEEeeEEEEe-----C----CEEEEccCC----cEEEeCCCCceeEEecCCcc
Q 022278 229 PGDFLNVKEVHYN-QHGLLLLEGQGIYRL-----G----DSWYPVQAG----DVLWMAPFVPQWYAALGKTR 286 (300)
Q Consensus 229 PG~~~p~~~~H~~-eh~~~iL~G~G~~~~-----~----g~~~~v~~G----D~i~~~~~~~H~~~n~G~e~ 286 (300)
||.-=+.|-|+.. ..-..++.|+..... | |+|..+.-+ -.+|+|+|+-|+|+|+|++.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~ 125 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA 125 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce
Confidence 6666555444444 466788899985442 2 245555444 36999999999999999987
No 177
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=86.17 E-value=0.072 Score=45.52 Aligned_cols=52 Identities=6% Similarity=-0.054 Sum_probs=43.0
Q ss_pred eeccccCCCccCCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278 17 VTIGATDGGFCSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 17 ~~~~~~~~~~~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~ 69 (300)
+..++..-| .|.++||+++|+|+-|+.++++|+.++|. |+++||++-..++.
T Consensus 13 Ll~AK~~KG-LTwe~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kla~lLgL~~e~~~~ 69 (150)
T TIGR00673 13 LLESKKKKG-LTFADIADGLGLAEVFVAAALYGQAAAPADEARLVGAKLDLDEDSILE 69 (150)
T ss_pred HHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHhCCCCCCHHHHHHHHHHhCcCHHHHHH
Confidence 333444333 48899999999999999999999999998 99999998887765
No 178
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=85.63 E-value=0.85 Score=40.57 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=20.3
Q ss_pred EEEEccCCcEEEeCCCCceeEEecCCc
Q 022278 259 SWYPVQAGDVLWMAPFVPQWYAALGKT 285 (300)
Q Consensus 259 ~~~~v~~GD~i~~~~~~~H~~~n~G~e 285 (300)
-...++|||++|||+|-.|+.+|..++
T Consensus 209 ~~~~l~pGD~LfiP~gWwH~V~~~~~~ 235 (251)
T PF13621_consen 209 YEVVLEPGDVLFIPPGWWHQVENLSDD 235 (251)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEESTTS
T ss_pred eEEEECCCeEEEECCCCeEEEEEcCCC
Confidence 356899999999999999999999333
No 179
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=85.51 E-value=0.66 Score=40.88 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=35.6
Q ss_pred CCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCCeEEEEEEE
Q 022278 122 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE 175 (300)
Q Consensus 122 h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~ 175 (300)
....-++|+++|++++.. +++.+.|.+||.+.+.. ++.+.-....+++||+
T Consensus 133 ~~~~~l~~~~~G~~~i~~-~~~~~~L~~~d~l~~~~--~~~~~l~~~g~ll~v~ 183 (184)
T PF05962_consen 133 AASTVLVYVLEGAWSITE-GGNCISLSAGDLLLIDD--EEDLPLTGDGQLLWVS 183 (184)
T ss_dssp --SEEEEEESSS-EEECC-CEEEEEE-TT-EEEEES--EECEEEEEECCEEEEE
T ss_pred CCCEEEEEEeeCcEEEec-CCCceEcCCCCEEEEeC--CCceEecCCeeEEEEe
Confidence 456778999999999886 77899999999999987 3333225567777774
No 180
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=85.08 E-value=0.14 Score=44.43 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=30.3
Q ss_pred cCCcccccccCCCCcceeeecCCCCChhh-----hhccc
Q 022278 27 CSAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLP 60 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~l 60 (300)
-||.+||+|+|.|++||-.+|-|..-|.- |+++|
T Consensus 19 itQ~dLA~~aGVSQ~~IArlE~G~vdPrlSt~k~Il~aL 57 (187)
T COG3620 19 ITQKDLARRAGVSQPYIARLEAGKVDPRLSTVKRILEAL 57 (187)
T ss_pred CCHHHHHHHcCccHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 48899999999999999999999999976 66665
No 181
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=84.74 E-value=6 Score=34.69 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=42.7
Q ss_pred cCCcccCccee--eccceEEEEEEeeEEEEe-C--------CEEEEccC----CcEEEeCCCCceeEEecCCccEEEEEE
Q 022278 228 QPGDFLNVKEV--HYNQHGLLLLEGQGIYRL-G--------DSWYPVQA----GDVLWMAPFVPQWYAALGKTRTRYLLY 292 (300)
Q Consensus 228 ~PG~~~p~~~~--H~~eh~~~iL~G~G~~~~-~--------g~~~~v~~----GD~i~~~~~~~H~~~n~G~e~~~fi~~ 292 (300)
.+|.-=+.|-+ +.+...+.++.|+..-.+ | |+|..+.- +-.+|+|+|+-|+|.+.+++ ..++|.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 55665555433 346678899999875432 2 45555333 44999999999999999865 444443
No 182
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=83.89 E-value=0.21 Score=39.39 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=28.9
Q ss_pred CCccCCcccccccCCCCcceeeecCCCC--Chhh
Q 022278 24 GGFCSAPSILDRETSSKPMYWKVTNPTL--SPSH 55 (300)
Q Consensus 24 ~~~~~~~~~a~r~~lsk~~~Sqver~~~--sps~ 55 (300)
.+=+|+.+||+++|.|+.+||-++|++. .|.+
T Consensus 53 ~~~~tQrEIa~~lGiS~atIsR~sn~lk~~~~~~ 86 (94)
T TIGR01321 53 NGNMSQREIASKLGVSIATITRGSNNLKTMDPNF 86 (94)
T ss_pred hCCCCHHHHHHHhCCChhhhhHHHhhcccCCHHH
Confidence 4668999999999999999999999999 7773
No 183
>cd01392 HTH_LacI Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators. HTH-DNA binding domain of the LacI (lactose operon repressor) family of bacterial transcriptional regulators and their putative homologs found in plants. The LacI family has more than 500 members distributed among almost all bacterial species. The monomeric proteins of the LacI family contain common structural features that include a small DNA-binding domain with a helix-turn-helix motif in the N-terminus, a regulatory ligand-binding domain which exhibits the type I periplasmic binding protein fold in the C-terminus for oligomerization and for effector binding, and an approximately 18-amino acid linker connecting these two functional domains. In LacI-like transcriptional regulators, the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. When the C-terminal domain of the LacI family repre
Probab=82.21 E-value=0.28 Score=33.34 Aligned_cols=24 Identities=21% Similarity=0.018 Sum_probs=21.4
Q ss_pred ccccccCCCCcceeeecCCCCChh
Q 022278 31 SILDRETSSKPMYWKVTNPTLSPS 54 (300)
Q Consensus 31 ~~a~r~~lsk~~~Sqver~~~sps 54 (300)
+||+++|+|++-+|+++||...++
T Consensus 2 ~lA~~~gvs~~tvs~~l~g~~~vs 25 (52)
T cd01392 2 DIARAAGVSVATVSRVLNGKPRVS 25 (52)
T ss_pred cHHHHHCcCHHHHHHHHcCCCCCC
Confidence 689999999999999999996544
No 184
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=80.92 E-value=6.2 Score=34.60 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=45.7
Q ss_pred CCCcCCCC-CCC-ceEEEEEEECEEEEEEc----CC----c--EEEeccC--cEEEeCCCCceEEee--CCeEEEEEEEe
Q 022278 113 ENARSALP-PHD-VERFIFVVQGSAMLTNA----SG----V--SSKLMVD--SYTYLPPNFAHSLRA--EGSATLVVFER 176 (300)
Q Consensus 113 PG~~~~~~-~h~-gEEf~yVLeG~v~l~v~----gg----~--~~~L~~G--ds~yfpa~~~H~~~N--~~~a~vl~v~~ 176 (300)
||---+.| .+. ..+++.|+.|++-..+- |. + ...|.+. -.+|+|+|..|.+.| ++..-++++..
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~~ 133 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVTE 133 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEecc
Confidence 44333555 333 47899999999866441 22 1 2345544 689999999999998 45566777777
Q ss_pred eccc
Q 022278 177 RYAS 180 (300)
Q Consensus 177 ~y~~ 180 (300)
.|.|
T Consensus 134 ~Y~p 137 (173)
T COG1898 134 EYDP 137 (173)
T ss_pred eeCc
Confidence 8876
No 185
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=80.80 E-value=11 Score=35.82 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=39.9
Q ss_pred EEEEEEEcCCCc--CCCCCCCceEEEEEEECEEEEEEcC----------------------CcEEEeccCcEEEeCCCCc
Q 022278 105 VMYLANMQENAR--SALPPHDVERFIFVVQGSAMLTNAS----------------------GVSSKLMVDSYTYLPPNFA 160 (300)
Q Consensus 105 ~~~lv~l~PG~~--~~~~~h~gEEf~yVLeG~v~l~v~g----------------------g~~~~L~~Gds~yfpa~~~ 160 (300)
...-+.+.|+++ ...|....+-|+.=++|+=...+.+ ..+++|++||.+|+|+|..
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~ 193 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWW 193 (319)
T ss_dssp EEEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-E
T ss_pred cceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCcc
Confidence 334445566663 3455456788888888987766621 1258999999999999999
Q ss_pred eEEeeCC
Q 022278 161 HSLRAEG 167 (300)
Q Consensus 161 H~~~N~~ 167 (300)
|.-.+.+
T Consensus 194 H~~~~~~ 200 (319)
T PF08007_consen 194 HQAVTTD 200 (319)
T ss_dssp EEEEESS
T ss_pred CCCCCCC
Confidence 9999744
No 186
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=80.67 E-value=11 Score=33.00 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=37.6
Q ss_pred cCCcccCcceeecc----ceEEEEEEeeEEEE-eC--------CEEEEc--cCCc--EEEeCCCCceeEEecCCc
Q 022278 228 QPGDFLNVKEVHYN----QHGLLLLEGQGIYR-LG--------DSWYPV--QAGD--VLWMAPFVPQWYAALGKT 285 (300)
Q Consensus 228 ~PG~~~p~~~~H~~----eh~~~iL~G~G~~~-~~--------g~~~~v--~~GD--~i~~~~~~~H~~~n~G~e 285 (300)
.+|.-=+. |-|.. ...+.++.|+.... +| |+|..+ .+++ .+|+|+|+-|+|.+.+++
T Consensus 51 ~~gvlRGl-H~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~ 124 (176)
T PF00908_consen 51 KKGVLRGL-HYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD 124 (176)
T ss_dssp ETTBEEEE-EEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred cccEEEEE-EEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence 44665554 33333 35578999987543 23 677766 4444 799999999999999875
No 187
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=80.55 E-value=11 Score=29.03 Aligned_cols=45 Identities=22% Similarity=0.239 Sum_probs=35.3
Q ss_pred EEEEEEeeEEEE-eCC------EEEEccCCcEEEeCCCCceeEEecCCccEEE
Q 022278 244 GLLLLEGQGIYR-LGD------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRY 289 (300)
Q Consensus 244 ~~~iL~G~G~~~-~~g------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~f 289 (300)
-+-||+|+..|+ +++ +..-..+|+..+++|...|-++..++ |++|
T Consensus 28 ~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~-D~~f 79 (82)
T PF09313_consen 28 KLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD-DLRF 79 (82)
T ss_dssp EEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST-T-EE
T ss_pred EEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC-CEEE
Confidence 578999999998 443 67889999999999999999999975 4444
No 188
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=80.55 E-value=5.8 Score=34.78 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=46.6
Q ss_pred cCCCcCCCC-C--CCceEEEEEEECEEEEEEcC--------Cc--EEEecc--CcEEEeCCCCceEEee-CCeEEEEEE-
Q 022278 112 QENARSALP-P--HDVERFIFVVQGSAMLTNAS--------GV--SSKLMV--DSYTYLPPNFAHSLRA-EGSATLVVF- 174 (300)
Q Consensus 112 ~PG~~~~~~-~--h~gEEf~yVLeG~v~l~v~g--------g~--~~~L~~--Gds~yfpa~~~H~~~N-~~~a~vl~v- 174 (300)
.+|--.+.| . +....+++|+.|++...+-| |+ ...|.+ +-.+|+|+|..|.+.+ .+.+.++..
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~ 131 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC 131 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence 444333445 2 45789999999998765412 12 356666 5599999999999998 555665554
Q ss_pred Eeecccc
Q 022278 175 ERRYASL 181 (300)
Q Consensus 175 ~~~y~~~ 181 (300)
...|.|.
T Consensus 132 ~~~y~p~ 138 (176)
T TIGR01221 132 TDYYAPE 138 (176)
T ss_pred CCCcCcc
Confidence 5666653
No 189
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=79.32 E-value=2.7 Score=37.28 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.3
Q ss_pred EEEeccCcEEEeCCCCceEEeeC
Q 022278 144 SSKLMVDSYTYLPPNFAHSLRAE 166 (300)
Q Consensus 144 ~~~L~~Gds~yfpa~~~H~~~N~ 166 (300)
+.+|++||.+|+|++--|.++|.
T Consensus 210 ~~~l~pGD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 210 EVVLEPGDVLFIPPGWWHQVENL 232 (251)
T ss_dssp EEEEETT-EEEE-TT-EEEEEES
T ss_pred EEEECCCeEEEECCCCeEEEEEc
Confidence 46899999999999999999996
No 190
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=77.73 E-value=8.4 Score=33.72 Aligned_cols=61 Identities=20% Similarity=0.400 Sum_probs=39.2
Q ss_pred CCceEEEEEEECEEEEEEcC--------Cc--EEEeccCc--EEEeCCCCceEEee-CCeEEEEE-EEeeccccC
Q 022278 122 HDVERFIFVVQGSAMLTNAS--------GV--SSKLMVDS--YTYLPPNFAHSLRA-EGSATLVV-FERRYASLE 182 (300)
Q Consensus 122 h~gEEf~yVLeG~v~l~v~g--------g~--~~~L~~Gd--s~yfpa~~~H~~~N-~~~a~vl~-v~~~y~~~~ 182 (300)
+....++.|++|++...+-| |+ ...|.++. .+|+|+|..|.+.+ ...+.++. +...|.|..
T Consensus 65 ~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~~t~~y~p~~ 139 (176)
T PF00908_consen 65 YAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYKVTNYYDPED 139 (176)
T ss_dssp T-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEEESS---GGG
T ss_pred CCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEecCCccCccc
Confidence 45679999999998665422 33 35777776 69999999999998 44455444 555666643
No 191
>PHA02984 hypothetical protein; Provisional
Probab=77.37 E-value=9.8 Score=35.59 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=42.4
Q ss_pred EEEEEEECEEEEEE-cCCc--EEEeccCcEEEeCCCCceEEee-CCeEEEEEEEeecc
Q 022278 126 RFIFVVQGSAMLTN-ASGV--SSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERRYA 179 (300)
Q Consensus 126 Ef~yVLeG~v~l~v-~gg~--~~~L~~Gds~yfpa~~~H~~~N-~~~a~vl~v~~~y~ 179 (300)
-|+.+|+|+..+.. .+++ +..+++||.+.+.-+..|.... ++..+++++ +|+
T Consensus 95 ~FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~Vi--~y~ 150 (286)
T PHA02984 95 MFVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLAVI--TYT 150 (286)
T ss_pred EEEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeCCCceEEEEE--EEE
Confidence 46778999999887 2333 4799999999999999999885 788998888 454
No 192
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=77.08 E-value=35 Score=29.76 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=58.4
Q ss_pred EEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE---c-------CCcEEEeccCcEEEeCCCCceEEeeCCeEEEEE
Q 022278 104 FVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN---A-------SGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVV 173 (300)
Q Consensus 104 f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v---~-------gg~~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~ 173 (300)
|..+.+++.||..++.|.|...-.+=||.|.=+=++ . +++...+.+|+.- +.||.-|++.|..+.|-.
T Consensus 73 ltV~~~t~~PG~~~p~HnH~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs~- 150 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHLMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRSG- 150 (191)
T ss_pred EEEEEEEeCCCcccCCcccchheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCccc-
Confidence 999999999999999998888777777877543222 1 2334456677655 888999999996665542
Q ss_pred EEeeccccCCCCcceeec
Q 022278 174 FERRYASLENHITEQIVG 191 (300)
Q Consensus 174 v~~~y~~~~g~~p~~~~~ 191 (300)
-.+.|.+-=|..+..+++
T Consensus 151 aiHvy~a~ig~~~r~~fs 168 (191)
T COG5553 151 AIHVYLADIGGTDRQLFS 168 (191)
T ss_pred eEEEEecccCCCcceeee
Confidence 335666522334555554
No 193
>COG1396 HipB Predicted transcriptional regulators [Transcription]
Probab=76.99 E-value=0.28 Score=35.37 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=34.7
Q ss_pred cCCcccccccCCCCcceeeecCCCC-Chhh-----hhcccCCcceeeee
Q 022278 27 CSAPSILDRETSSKPMYWKVTNPTL-SPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~~~-sps~-----I~~~lg~trs~f~~ 69 (300)
+|+.++|++.++++..+|++|++.. .|+. ++..++.....++.
T Consensus 15 ~s~~~~a~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (120)
T COG1396 15 LSQEELAERLGVSRSTISRIERGRSESPSLELLARLAAALGVSLDELLE 63 (120)
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHHCCCHHHhcC
Confidence 5668999999999999999999999 8887 55556666664443
No 194
>PHA00672 hypothetical protein
Probab=76.42 E-value=14 Score=30.85 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=56.0
Q ss_pred eEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278 220 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 290 (300)
Q Consensus 220 ~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi 290 (300)
.--|.+++..|.-+-- ..|-.++. .|++|...+..||+...+..=-+|--++|-.+.+++--|+.+.-|
T Consensus 47 vYARei~IPkGt~LtG-~~hkf~~~-ii~sG~itV~tdge~~rl~g~~~i~~~aG~KragyAHeDT~wt~~ 115 (152)
T PHA00672 47 VYARTIRIPAGVALTG-ALIKVSTV-LIFSGHATVFIGGEAVELRGYHVIPASAGRKQAFVAHADTDLTML 115 (152)
T ss_pred eeEEEEeccCceeeee-eeeEeeEE-EEecccEEEEeCCcEEEEecceeeecCCCcccceeeeccceEEEE
Confidence 3446777777766543 56767766 999999999999999999999999999999999999877766544
No 195
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=76.40 E-value=22 Score=32.79 Aligned_cols=87 Identities=10% Similarity=0.153 Sum_probs=65.2
Q ss_pred EEEEeeCCCCCcc-eEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEE----------EccCCcEEEeCCCC
Q 022278 207 QLRKLLPQAVPFD-FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWY----------PVQAGDVLWMAPFV 275 (300)
Q Consensus 207 ~~~~l~p~~~~~~-~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~----------~v~~GD~i~~~~~~ 275 (300)
.++...|++.++. .-|++..|++|.+.-. .+-..|-++.++.|+..+..+|+.. +=+|=|.+|++.|-
T Consensus 15 ~v~~vtp~sagw~YVGF~~~~L~~Ges~~~-~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~ 93 (270)
T COG3718 15 LVQDVTPESAGWEYVGFRLLRLAAGESATE-ETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGS 93 (270)
T ss_pred ceEEecCCCCCceeEEEEEEEccCCCcccc-cCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCc
Confidence 4556778877775 5899999999999875 6677778889999999999887533 22366999999998
Q ss_pred ceeEEecCCccEEEEEEeec
Q 022278 276 PQWYAALGKTRTRYLLYKDV 295 (300)
Q Consensus 276 ~H~~~n~G~e~~~fi~~kd~ 295 (300)
.-++.++++-.+ =+||-..
T Consensus 94 ~~~vtA~t~~~v-AvC~AP~ 112 (270)
T COG3718 94 AFSVTATTDLEV-AVCSAPG 112 (270)
T ss_pred eEEEEeecceEE-EEEeCCC
Confidence 888888776432 2444433
No 196
>PHA00542 putative Cro-like protein
Probab=76.40 E-value=0.3 Score=37.27 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=26.1
Q ss_pred cCCcccccccCCCCcceeeecCCCC-Chhh
Q 022278 27 CSAPSILDRETSSKPMYWKVTNPTL-SPSH 55 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~~~-sps~ 55 (300)
-|+.+||+.+|.|++-+|++|+|.. .|+.
T Consensus 32 lTq~elA~~lgIs~~tIsr~e~g~~~~p~~ 61 (82)
T PHA00542 32 WSQEQIADATDVSQPTICRIYSGRHKDPRY 61 (82)
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCH
Confidence 4899999999999999999999995 5775
No 197
>smart00352 POU Found in Pit-Oct-Unc transcription factors.
Probab=76.37 E-value=0.33 Score=36.72 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=25.5
Q ss_pred CCcccccccC------CCCcceeeecCCCCChhh
Q 022278 28 SAPSILDRET------SSKPMYWKVTNPTLSPSH 55 (300)
Q Consensus 28 ~~~~~a~r~~------lsk~~~Sqver~~~sps~ 55 (300)
||.+||++.| .|++.||++|++..|++-
T Consensus 26 TQ~dvA~~lg~~~g~i~SQstISR~Es~~ls~~n 59 (75)
T smart00352 26 TQADVGLALGALYGPDFSQTTICRFEALQLSFKN 59 (75)
T ss_pred CHHHHHHHhcccccCcCCHHHHHHHHhcCccHHH
Confidence 7789999999 499999999999999874
No 198
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=76.26 E-value=16 Score=31.49 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=44.2
Q ss_pred EEEEcCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcE---EEeccCcEEEe----CCCCce--EEeeCCeEEEEEEEe
Q 022278 108 LANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTYL----PPNFAH--SLRAEGSATLVVFER 176 (300)
Q Consensus 108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v--~gg~~---~~L~~Gds~yf----pa~~~H--~~~N~~~a~vl~v~~ 176 (300)
..++++|..--........+++|++|.+.+.. .+|++ ..+.+||.+=. ....++ .++..++++++++.+
T Consensus 22 ~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i~~ 101 (211)
T PRK11753 22 IHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISY 101 (211)
T ss_pred EEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEEcH
Confidence 55667776443333456789999999999874 23443 36799998743 322233 333467888888843
No 199
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=76.23 E-value=5.9 Score=37.42 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=36.7
Q ss_pred eEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee
Q 022278 125 ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 125 EEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N 165 (300)
--.++|.+|.+++.-.+|++..+.+++.+++|.+..|.+.|
T Consensus 39 ~~li~v~~G~~~i~~~~g~~l~i~~p~~~~~p~~~~~~~~~ 79 (291)
T PRK15186 39 SVLIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHITM 79 (291)
T ss_pred eEEEEeccceEEEEeCCCceEEeCCCeEEEEeCCcEEEEEe
Confidence 45789999999998745677899999999999999999998
No 200
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=75.45 E-value=9.8 Score=30.60 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=39.8
Q ss_pred cCCCCCC-CceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCC--CceEEee--C-CeEEEE
Q 022278 116 RSALPPH-DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA--E-GSATLV 172 (300)
Q Consensus 116 ~~~~~~h-~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~--~~H~~~N--~-~~a~vl 172 (300)
..+.|+| +.|.+-||++|+++-.-.-|...+|++||.-+..|| +.|.=.| + ++++++
T Consensus 41 gf~~HPH~g~eivTyv~~G~~~H~Ds~G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 41 GFPMHPHRGFEIVTYVLEGELRHRDSLGNRGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp EEEEEEECSEEEEEEEEESEEEEEETTSEEEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCcCCCCceEEEEEecCEEEEECCCCCeeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 3455654 568888999999987753467789999999999887 5566556 2 456654
No 201
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=74.99 E-value=19 Score=30.46 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=37.4
Q ss_pred CceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEe
Q 022278 123 DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR 164 (300)
Q Consensus 123 ~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~ 164 (300)
-.--+++|++|+=.+++ |++.+...+|+++..+.+.|-..+
T Consensus 22 y~p~i~~vlQG~K~~~~-g~~~~~Y~~g~~lv~~~~lPv~~~ 62 (155)
T PF06719_consen 22 YEPSICIVLQGSKRVHL-GDQVFEYDAGQYLVSSVDLPVESE 62 (155)
T ss_pred cCCeEEEEEeeeEEEEE-CCceEEecCCcEEEecCCCcEEEE
Confidence 44668999999999999 999999999999999999998776
No 202
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=74.71 E-value=7.4 Score=28.23 Aligned_cols=66 Identities=6% Similarity=-0.018 Sum_probs=41.1
Q ss_pred EEcCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcE---EEeccCcEEEeCCC-----CceEEeeCCeEEEEEEE
Q 022278 110 NMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTYLPPN-----FAHSLRAEGSATLVVFE 175 (300)
Q Consensus 110 ~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v--~gg~~---~~L~~Gds~yfpa~-----~~H~~~N~~~a~vl~v~ 175 (300)
++++|..--........++||++|.+.+.. .+++. ..+.+||.+-..+- ..+.+...++++++.+.
T Consensus 3 ~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~ 78 (91)
T PF00027_consen 3 TYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIP 78 (91)
T ss_dssp EESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEE
T ss_pred EECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEe
Confidence 445554332223457999999999999976 23442 47888887654322 33344446677777664
No 203
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=74.27 E-value=7.9 Score=34.71 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=40.1
Q ss_pred ceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCcee
Q 022278 219 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQW 278 (300)
Q Consensus 219 ~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~ 278 (300)
+..|.++-++||.++|.| +|.--|...||+| .+-+... ...+||++--...+.|+
T Consensus 127 s~~V~llki~~g~s~P~H-tH~G~E~t~vl~G--~~sde~G--~y~vgD~~~~d~~v~H~ 181 (216)
T COG3806 127 SRRVALLKIEPGRSFPDH-THVGIERTAVLEG--AFSDENG--EYLVGDFTLADGTVQHS 181 (216)
T ss_pred CceeEEEEeccCcccccc-cccceEEEEEEee--ccccCCC--ccccCceeecCCccccc
Confidence 456778999999999986 5554445556554 4554444 55679999999999997
No 204
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=73.56 E-value=20 Score=31.92 Aligned_cols=62 Identities=10% Similarity=-0.011 Sum_probs=43.3
Q ss_pred cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe---CCEEE---EccCCcEEEeCCCCceeEE
Q 022278 218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---GDSWY---PVQAGDVLWMAPFVPQWYA 280 (300)
Q Consensus 218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~---~g~~~---~v~~GD~i~~~~~~~H~~~ 280 (300)
.....+..++++|..+- ++...-.+.|+|++|...+.. +|+.. -+.+||++=..++-++.+.
T Consensus 34 ~~~~~~~~~~~kge~l~-~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~ 101 (230)
T PRK09391 34 AGLVASEFSYKKGEEIY-GEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFT 101 (230)
T ss_pred ccceeeeEEECCCCEEE-CCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeE
Confidence 35667888999999885 355566688999999998763 56543 3479998766555444333
No 205
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=72.93 E-value=24 Score=31.52 Aligned_cols=73 Identities=12% Similarity=0.040 Sum_probs=48.5
Q ss_pred EEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcE---EEeccCcEEEeCCCCceEEe--eCCeEEEEEEEe
Q 022278 104 FVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTYLPPNFAHSLR--AEGSATLVVFER 176 (300)
Q Consensus 104 f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v--~gg~~---~~L~~Gds~yfpa~~~H~~~--N~~~a~vl~v~~ 176 (300)
-.....++++|..--......+.+++|++|.+.+.. .+|++ ..+.+||.+=+.++.++.+. ..++++++.+.+
T Consensus 36 ~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~i~~ 115 (230)
T PRK09391 36 LVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRLIKR 115 (230)
T ss_pred ceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEEEEH
Confidence 334466777775543334567889999999999875 24554 34589998877666555444 256777776643
No 206
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=72.63 E-value=0.46 Score=45.71 Aligned_cols=42 Identities=5% Similarity=0.007 Sum_probs=36.8
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh-----------hhcccCCcceeeee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----------LQDLPGFTRSVYKR 69 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----------I~~~lg~trs~f~~ 69 (300)
|+++||+|++++++.|+++|+|...|.. ++++||++...+..
T Consensus 29 Sq~~vA~~l~l~~~~I~~iE~g~~~~~~~~tf~RGyir~yA~~lgv~~~~L~~ 81 (331)
T PRK10856 29 TQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLP 81 (331)
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 6899999999999999999999987764 58889998888765
No 207
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=72.37 E-value=22 Score=26.36 Aligned_cols=69 Identities=16% Similarity=0.064 Sum_probs=41.1
Q ss_pred EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcC--Cc---EEEeccCcEEEeCCC---CceE--EeeCCeEEEEEEEe
Q 022278 108 LANMQENARSALPPHDVERFIFVVQGSAMLTNAS--GV---SSKLMVDSYTYLPPN---FAHS--LRAEGSATLVVFER 176 (300)
Q Consensus 108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~g--g~---~~~L~~Gds~yfpa~---~~H~--~~N~~~a~vl~v~~ 176 (300)
..++++|..--......+.+++|++|.+.+...+ |+ ...+.+|+.+=..+- .++. ....++++++.+.+
T Consensus 19 ~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~ 97 (115)
T cd00038 19 ERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPR 97 (115)
T ss_pred eeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCCCceEEEcCceEEEEEeH
Confidence 4456666543223345688999999999997722 12 346778887755322 2222 22356777777643
No 208
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=71.16 E-value=12 Score=36.59 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=54.5
Q ss_pred EEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccccCCCCcceeec----cCCC---CCCc-----ccCC-ceeEEEEe
Q 022278 145 SKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITEQIVG----STDK---QPLL-----ETPG-EVFQLRKL 211 (300)
Q Consensus 145 ~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~~~g~~p~~~~~----~~~d---~~~~-----~~~g-~~~~~~~l 211 (300)
..|++|+.+|.|||.+|.+-...-+.+.--+. =.=..|..|+.+-- +.-+ -|.. +... .. .....
T Consensus 252 v~L~pGeaifl~a~~~HAYl~G~~vE~MA~SD-NVlRaGLTpK~iDv~~L~~~l~y~~~~~~~~~~~~~~~~~~-~~~~y 329 (373)
T PF01238_consen 252 VELQPGEAIFLPAGEPHAYLSGDCVECMANSD-NVLRAGLTPKHIDVPELLEMLTYKPKPPEPAILPPDAPYDS-GSVLY 329 (373)
T ss_dssp EEE-TT-EEEEHTTHHEEEEEEEEEEEEESSE-EEEECCSCSSEEEHHHHHHC-EEEEEEGGGCCE--ECCEEE-CEEEE
T ss_pred EEecCCceEEecCCCccccccccceecccccc-ceeccCCccceeEHhHheeeeEeeccCCcceeecCccccCC-ceEEE
Confidence 58999999999999999987522222221000 00023444443211 0000 0111 1110 00 01112
Q ss_pred eCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC
Q 022278 212 LPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD 258 (300)
Q Consensus 212 ~p~~~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g 258 (300)
.| .-.+|.+..++++.|.+.- ....-..++++++|++.+..++
T Consensus 330 ~p--p~~eF~l~~~~l~~g~~~~--~~~~~~~Illv~~G~~~i~~~~ 372 (373)
T PF01238_consen 330 GP--PVDEFALSRIDLKKGESFI--LPLDGPSILLVTEGSATIIVSH 372 (373)
T ss_dssp EE--SSSSEEEEEEECCTTEEEE--E-TTS-EEEEEEEEEEEEEETT
T ss_pred CC--CCCeEEEEEEEECCCCeEE--CCCCCceEEEEeCCEEEEEeCC
Confidence 23 2357888899999777632 2234457899999999998875
No 209
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=71.11 E-value=24 Score=35.26 Aligned_cols=73 Identities=10% Similarity=0.010 Sum_probs=46.8
Q ss_pred cceEEEEEEecCCccc-C-cceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEee
Q 022278 218 FDFNIHIMDFQPGDFL-N-VKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD 294 (300)
Q Consensus 218 ~~~~~~~~tl~PG~~~-p-~~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd 294 (300)
.++++++.. ...++ + +--...-++-+++-+|.+.+.-.=-+..|++||++.||.|+.+.+.-. ++.+.++.-.
T Consensus 123 ~g~ai~~y~--~~~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~E~ 197 (424)
T PF04209_consen 123 NGVAIHVYA--ANASMDDRAFRNADGDELIFPQQGSLRLETEFGRLDVRPGDYVVIPRGTRFRVELP--GPARGYIIEN 197 (424)
T ss_dssp EEEEEEEEE--E-S---SEEEEESSEEEEEEEEES-EEEEETTEEEEE-TTEEEEE-TT--EEEE-S--SSEEEEEEEE
T ss_pred CCcEEEEEE--cCCCCCCcceEcCCCCEEEEEEECCEEEEecCeeEEEcCCeEEEECCeeEEEEEeC--CCceEEEEEc
Confidence 356655554 44544 1 112334456789999999999999999999999999999999998877 5677666543
No 210
>COG3758 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.19 E-value=34 Score=30.53 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=56.5
Q ss_pred EeCCCCeeeccCCCC--CcceEEEEecCCC--CCcEEEE--EEEEcCCCcCCCC-CCCceEEEEEEECE-EEEEEcCC--
Q 022278 73 LITPESHVLSPLPEW--TNTLGAYLITPAM--GSHFVMY--LANMQENARSALP-PHDVERFIFVVQGS-AMLTNASG-- 142 (300)
Q Consensus 73 v~~~e~~~~~~~p~~--~~~~~~~L~sp~~--g~~f~~~--lv~l~PG~~~~~~-~h~gEEf~yVLeG~-v~l~v~gg-- 142 (300)
+++++++.. .|.. .|.+..+.+.|.. .+.|... +.+++. ..+.. -.+.++.+-||+|. ++|.+ .|
T Consensus 6 il~~~dy~~--mPWkNgGG~T~EIav~P~~a~~~dF~WRiS~AtVa~--~G~FS~fpGidR~lsvLeG~gm~L~~-~~~~ 80 (193)
T COG3758 6 ILRAEDYRR--MPWKNGGGETNEIAVYPEGAAKRDFDWRISIATVAA--DGPFSLFPGIDRILSVLEGGGMTLSS-AGRA 80 (193)
T ss_pred eeccccccc--CCcccCCCceEEEEEcCCCccccccceEEEEEeecc--CCCccccCCcceEEEEEecCceEEec-CCCc
Confidence 455666533 3432 3556777777764 4567665 344443 22332 46889999999999 99998 55
Q ss_pred cEEEeccCcEEEeCCCCceEEe
Q 022278 143 VSSKLMVDSYTYLPPNFAHSLR 164 (300)
Q Consensus 143 ~~~~L~~Gds~yfpa~~~H~~~ 164 (300)
....+.+.+-+-|+++++-.-+
T Consensus 81 ~~~l~~~~qp~aF~gD~~v~a~ 102 (193)
T COG3758 81 PVVLLRPLQPFAFAGDVPVHAR 102 (193)
T ss_pred cceecCCCCcccccCCceEEEE
Confidence 4466777777778888765444
No 211
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=67.84 E-value=8.8 Score=37.49 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=37.1
Q ss_pred EcCCCcCCCCCCCceEEEEEEECEEEEEEcCCc----------------------EEEeccCcEEEeCCCCceEEeeC
Q 022278 111 MQENARSALPPHDVERFIFVVQGSAMLTNASGV----------------------SSKLMVDSYTYLPPNFAHSLRAE 166 (300)
Q Consensus 111 l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~----------------------~~~L~~Gds~yfpa~~~H~~~N~ 166 (300)
..+||+.+.|-....-|++=..|+=+-.+ +.+ ..+|.+||.+|+||+.+|.=...
T Consensus 126 a~~GGgvg~H~D~YDVfliQg~G~RRW~v-~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 126 AAPGGGVGPHFDQYDVFLIQGQGRRRWRV-GKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred ecCCCccCccccchheeEEeecccceeec-CCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 35666666665556666666666655555 322 35789999999999999975543
No 212
>PHA02890 hypothetical protein; Provisional
Probab=67.37 E-value=21 Score=33.17 Aligned_cols=48 Identities=13% Similarity=0.228 Sum_probs=38.6
Q ss_pred EEEEEEECEEEEEE-cCCc--EEEeccCcEEEeCCCCceEEeeCCeEEEEEE
Q 022278 126 RFIFVVQGSAMLTN-ASGV--SSKLMVDSYTYLPPNFAHSLRAEGSATLVVF 174 (300)
Q Consensus 126 Ef~yVLeG~v~l~v-~gg~--~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v 174 (300)
=|+.+|+|+..+.+ .+++ +..+++||.+...-+..|.... +..+++++
T Consensus 94 ~FVlCL~Gs~~In~~~~d~~iS~~I~kGeaF~mdv~t~H~i~T-Knl~L~Vi 144 (278)
T PHA02890 94 FFVACIEGSCKINVNIGDREISDHIHENQGFIMDVGLDHAIDS-DNVGLFIT 144 (278)
T ss_pred EEEEEeCCeEEEEEecCCceeeeeeecCceEEEEccceEEEEc-cceeEEEE
Confidence 35678999998887 2333 5899999999999999999886 66777776
No 213
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=66.33 E-value=20 Score=26.53 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=36.6
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCC------EEEEccCCcEEEe
Q 022278 222 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD------SWYPVQAGDVLWM 271 (300)
Q Consensus 222 ~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g------~~~~v~~GD~i~~ 271 (300)
++..++++|..+= .+....++.++|++|...+...+ ....+.+||++-.
T Consensus 17 ~~~~~~~~g~~l~-~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 17 LEERRFPAGEVII-RQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred ceeeeeCCCCEEE-cCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 6778899999873 35556678999999999886554 2556778888654
No 214
>PHA00672 hypothetical protein
Probab=65.50 E-value=38 Score=28.36 Aligned_cols=62 Identities=10% Similarity=-0.000 Sum_probs=50.1
Q ss_pred CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee
Q 022278 102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N 165 (300)
+..-...++++.|---....|..+.| .+++|.+++.. ||+..+|..--.+--|||.+...-.
T Consensus 45 ~GvYARei~IPkGt~LtG~~hkf~~~-ii~sG~itV~t-dge~~rl~g~~~i~~~aG~KragyA 106 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALIKVSTV-LIFSGHATVFI-GGEAVELRGYHVIPASAGRKQAFVA 106 (152)
T ss_pred cceeEEEEeccCceeeeeeeeEeeEE-EEecccEEEEe-CCcEEEEecceeeecCCCcccceee
Confidence 34556678888875444446888999 99999999999 9999999998888899998887665
No 215
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=65.28 E-value=18 Score=26.17 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=41.6
Q ss_pred EEEecCCcccCcceeeccceEEEEEEeeEEEEeCC--EEEEccCCcEEEeCCCCceeEEe
Q 022278 224 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAA 281 (300)
Q Consensus 224 ~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n 281 (300)
.|+|.||..+........+ +-+.+|+.-++.+| +.|-++|||.+-++++..=++.+
T Consensus 1 ~~~L~~g~~~~lr~~~~~~--l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 1 TFELAPGETLSLRAAAGQR--LRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred CEEeCCCceEEeEcCCCcE--EEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 3778899887764333333 99999999999886 67778888888888876555554
No 216
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=63.16 E-value=2.8 Score=44.72 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=35.0
Q ss_pred EEEEEecCCcccCcceeec-cceEEEEEEee-----EEEEeCCEEEEccCCcEEEeCCCCceeEEec
Q 022278 222 IHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQ-----GIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL 282 (300)
Q Consensus 222 ~~~~tl~PG~~~p~~~~H~-~eh~~~iL~G~-----G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~ 282 (300)
.+....+-|...+. .||+ ...-+|+-.+. -.|-+.+=...=..||++|+|+|+||+.+|.
T Consensus 757 L~k~~~E~~~~~~~-v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNL 822 (889)
T KOG1356|consen 757 LRKVCKEQGHEVPK-VHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNL 822 (889)
T ss_pred HHHhhHHhcCCCCc-ccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhh
Confidence 34555666665554 3443 33345553321 1233333333345799999999999999986
No 217
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=63.15 E-value=1.1 Score=45.24 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=37.2
Q ss_pred CCccccccc-----CCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278 28 SAPSILDRE-----TSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 28 ~~~~~a~r~-----~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~ 69 (300)
|+.+||++. ++|++.+||.|+|.+.|+. |++.|+++...+..
T Consensus 18 tq~~la~~~~~~g~~vs~~~is~~e~g~~~p~~~~l~~la~~l~v~~~~l~~ 69 (517)
T PRK13355 18 KQEDLVHAAEARGVKLGKSHISQYVSGKTGPRRDVLPFLAAILGVSEDWLLG 69 (517)
T ss_pred CHHHHHHHHHhccCCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHcc
Confidence 678889885 6999999999999999987 89999999998865
No 218
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.47 E-value=29 Score=26.94 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=46.3
Q ss_pred cCCcccCcceeeccceEEEEEEeeEEEEeCC--EEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 228 QPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 228 ~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
.||.+. + .-...|++-++.|...+.+.| +|..-.+|....+|.+-.-.++-. ++..|||
T Consensus 31 ~~geyt-F--gTa~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVa--eat~YlC 91 (94)
T COG3123 31 APGEYT-F--GTAAPEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVA--EATSYLC 91 (94)
T ss_pred eceeEE-e--ccCCceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEe--eeeehhe
Confidence 466643 1 234557899999999999886 899999999999999988777763 7777776
No 219
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=61.95 E-value=52 Score=29.00 Aligned_cols=67 Identities=6% Similarity=0.016 Sum_probs=40.4
Q ss_pred EEcCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcEE---EeccCcEEEeCC----CCceEEeeCCeEEEEEEEe
Q 022278 110 NMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVSS---KLMVDSYTYLPP----NFAHSLRAEGSATLVVFER 176 (300)
Q Consensus 110 ~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v--~gg~~~---~L~~Gds~yfpa----~~~H~~~N~~~a~vl~v~~ 176 (300)
++++|..--......+.+++|++|.+.+.. .+|++. .+.+||.+=..+ ..++.....++++++.+.+
T Consensus 41 ~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~~~~~~~~a~~~~~i~~ip~ 116 (235)
T PRK11161 41 PIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGQHPSFAQALETSMVCEIPF 116 (235)
T ss_pred eecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCCCCcceEEEeccEEEEEEEH
Confidence 456664433334556889999999998875 235553 347898874332 1222333356777777744
No 220
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=61.95 E-value=12 Score=29.03 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=39.1
Q ss_pred ceEEEEEEeeEEEEeCCE--EEEccCCcEEEeCCCCceeEEecCCccEEEEEEeec
Q 022278 242 QHGLLLLEGQGIYRLGDS--WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV 295 (300)
Q Consensus 242 eh~~~iL~G~G~~~~~g~--~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd~ 295 (300)
.++.-|==|.|.+.-+|+ ...|++||.+..+++....++. .++.+.++=++|+
T Consensus 35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~-~~~~~~~~~~~dI 89 (93)
T PF00166_consen 35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKF-DGEKYLIVREDDI 89 (93)
T ss_dssp EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEE-TTEEEEEEEGGGE
T ss_pred ceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEE-CCEEEEEEEHHHe
Confidence 356777779999998887 4579999999999999988888 4566666555553
No 221
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=61.44 E-value=16 Score=26.42 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=33.2
Q ss_pred EecCCcccCcceeeccceEEEEEEeeEEEEeC---CE---EEEccCCcEEEeC
Q 022278 226 DFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---DS---WYPVQAGDVLWMA 272 (300)
Q Consensus 226 tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~---g~---~~~v~~GD~i~~~ 272 (300)
++++|..+= +......+.++|++|...+... ++ ...+.+||++-..
T Consensus 3 ~~~~g~~i~-~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~ 54 (91)
T PF00027_consen 3 TYKKGEVIY-RQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEI 54 (91)
T ss_dssp EESTTEEEE-ETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGH
T ss_pred EECCCCEEE-eCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccce
Confidence 567787773 3555677899999999987743 34 4588899986543
No 222
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=61.32 E-value=22 Score=31.91 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=52.9
Q ss_pred cEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEe--eCCeEEEEEE
Q 022278 103 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR--AEGSATLVVF 174 (300)
Q Consensus 103 ~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~--N~~~a~vl~v 174 (300)
+-.+.+..+.||.+.+.|.|.|=|.+-|++|...=.. | .+.+||..--+.++.|+-+ .++++-.|..
T Consensus 127 s~~V~llki~~g~s~P~HtH~G~E~t~vl~G~~sde~-G----~y~vgD~~~~d~~v~H~piv~~~~eClcl~a 195 (216)
T COG3806 127 SRRVALLKIEPGRSFPDHTHVGIERTAVLEGAFSDEN-G----EYLVGDFTLADGTVQHSPIVLPPGECLCLAA 195 (216)
T ss_pred CceeEEEEeccCcccccccccceEEEEEEeeccccCC-C----ccccCceeecCCccccccccCCCCCceEEEE
Confidence 4556788889999999999999999999999877554 3 7899999999999999843 2455544433
No 223
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=61.22 E-value=41 Score=28.97 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=36.7
Q ss_pred EEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe---CCEE---EEccCCcEEEe
Q 022278 221 NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---GDSW---YPVQAGDVLWM 271 (300)
Q Consensus 221 ~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~---~g~~---~~v~~GD~i~~ 271 (300)
.+...++++|..+- .+-....+.|+|++|...+.. ||+. ..+.+||++-.
T Consensus 19 ~~~~~~~~kg~~l~-~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 19 HCHIHKYPAKSTLI-HAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred hCeEEEeCCCCEEE-eCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 45678999999884 355566689999999998663 4543 35799999743
No 224
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=61.22 E-value=5.4 Score=33.12 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=34.6
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEee---EEEEeCC-EEEEccCCcEEEeCCCCc
Q 022278 222 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ---GIYRLGD-SWYPVQAGDVLWMAPFVP 276 (300)
Q Consensus 222 ~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~---G~~~~~g-~~~~v~~GD~i~~~~~~~ 276 (300)
+.+..+.-|..+ .-|++.|+ |++.+|| --+.+++||.+.+.+|..
T Consensus 44 V~V~Nv~NG~Rf----------~TYvI~G~~GSg~I~lNGAAArl~~~GD~VII~sy~~ 92 (126)
T TIGR00223 44 VDIVNVNNGKRF----------STYAIAGKRGSRIICVNGAAARCVSVGDIVIIASYVT 92 (126)
T ss_pred EEEEECCCCcEE----------EEEEEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECCc
Confidence 455555555543 35888887 9999999 468899999999999865
No 225
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=61.17 E-value=5.5 Score=32.38 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=34.3
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEee---EEEEeCC-EEEEccCCcEEEeCCCCc
Q 022278 222 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ---GIYRLGD-SWYPVQAGDVLWMAPFVP 276 (300)
Q Consensus 222 ~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~---G~~~~~g-~~~~v~~GD~i~~~~~~~ 276 (300)
+.+..+.-|..+ .-|++.|+ |.+.+|| --+.+++||.+.+.+|..
T Consensus 43 V~I~Nv~NG~Rf----------~TYvI~g~~gSg~I~lNGAAAr~~~~GD~vII~sy~~ 91 (111)
T cd06919 43 VLVVNVNNGARF----------ETYVIPGERGSGVICLNGAAARLGQPGDRVIIMAYAL 91 (111)
T ss_pred EEEEECCCCcEE----------EEEEEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECcc
Confidence 455555555543 35888887 9999999 468999999999998864
No 226
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=61.03 E-value=38 Score=30.76 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=48.7
Q ss_pred CCCceEEEEEEECEEEEEEcCCc--EEEeccCcEEEeCCCCceEEeeCCeEEEEEEEeeccc
Q 022278 121 PHDVERFIFVVQGSAMLTNASGV--SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYAS 180 (300)
Q Consensus 121 ~h~gEEf~yVLeG~v~l~v~gg~--~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~~~y~~ 180 (300)
.|-.+...+||+|+..-.. +|+ ..+.++||..+.+.+....++=++.+=+|-+.|=..|
T Consensus 116 rh~ad~y~tIL~G~~~~~~-~g~~~~evy~pGd~~~l~rg~a~~y~m~~~tw~LEY~RG~IP 176 (216)
T PF04622_consen 116 RHWADDYFTILSGEQWAWS-PGSLEPEVYKPGDSHHLPRGEAKQYQMPPGTWALEYGRGWIP 176 (216)
T ss_pred ceEeeeEEEEEEEEEEEEc-CCCCCceEeccCCEEEecCceEEEEEeCCCeEEEEecCCchh
Confidence 4677889999999999987 654 4789999999999999999987777888888665555
No 227
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=60.84 E-value=19 Score=27.90 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=18.5
Q ss_pred EEEeccCcEEEeCCCCceEEeeCC
Q 022278 144 SSKLMVDSYTYLPPNFAHSLRAEG 167 (300)
Q Consensus 144 ~~~L~~Gds~yfpa~~~H~~~N~~ 167 (300)
+.+-++||.+++||+..|...|.+
T Consensus 82 ~~~Q~~Ge~V~i~pg~~H~v~n~g 105 (114)
T PF02373_consen 82 RFVQKPGEFVFIPPGAYHQVFNLG 105 (114)
T ss_dssp EEEEETT-EEEE-TT-EEEEEESS
T ss_pred cceECCCCEEEECCCceEEEEeCC
Confidence 468999999999999999999944
No 228
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=59.81 E-value=25 Score=32.09 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=27.1
Q ss_pred eEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEee
Q 022278 125 ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 125 EEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N 165 (300)
..+-...+|.....- .|...+|.||+|+-++|+.-|.|..
T Consensus 137 ~~v~V~~DG~~~t~~-aG~~l~L~PGESiTL~Pg~yH~Fw~ 176 (225)
T PF07385_consen 137 TDVTVPVDGIRRTVP-AGTQLRLNPGESITLPPGIYHWFWG 176 (225)
T ss_dssp S-EEEEETTEEEEE--TT-EEEE-TT-EEEE-TTEEEEEEE
T ss_pred CCeEEecCCcEEEec-CCceEEeCCCCeEeeCCCCeeeEEe
Confidence 345556677666554 6788899999999999999999987
No 229
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=59.53 E-value=15 Score=35.87 Aligned_cols=60 Identities=30% Similarity=0.476 Sum_probs=40.1
Q ss_pred cceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEE--eCC----------------------EEEEccCCcEEEeCC
Q 022278 218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR--LGD----------------------SWYPVQAGDVLWMAP 273 (300)
Q Consensus 218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~--~~g----------------------~~~~v~~GD~i~~~~ 273 (300)
.|.++. -..|||..+ -|..+=-.|+++|+|.=+ ++- ......|||++|+||
T Consensus 119 ddiMIS--~a~~GGgvg---~H~D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp 193 (383)
T COG2850 119 DDIMIS--FAAPGGGVG---PHFDQYDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPP 193 (383)
T ss_pred cceEEE--EecCCCccC---ccccchheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCC
Confidence 344444 346788654 577776789999998432 221 223478999999999
Q ss_pred CCceeEEec
Q 022278 274 FVPQWYAAL 282 (300)
Q Consensus 274 ~~~H~~~n~ 282 (300)
+.+|-=.+.
T Consensus 194 ~~~H~gvae 202 (383)
T COG2850 194 GFPHYGVAE 202 (383)
T ss_pred CCCcCCccc
Confidence 999954444
No 230
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=58.87 E-value=32 Score=26.96 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=35.7
Q ss_pred eEEEEEEeeEEEEeCCEEE--EccCCcEEEeCCCCceeEEecCCccEEEEEEe
Q 022278 243 HGLLLLEGQGIYRLGDSWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK 293 (300)
Q Consensus 243 h~~~iL~G~G~~~~~g~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k 293 (300)
++.-+==|.|.+..+|+.. .|++||.++.+.+-...+.. ++++ |++++
T Consensus 37 ~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~-~~~~--y~iv~ 86 (95)
T PRK00364 37 EGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKI-DGEE--YLILR 86 (95)
T ss_pred eEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEE-CCEE--EEEEE
Confidence 4566667888888888555 49999999999998888876 3444 55544
No 231
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=58.03 E-value=46 Score=28.45 Aligned_cols=68 Identities=13% Similarity=0.055 Sum_probs=40.9
Q ss_pred EEEcCCCcCCCCCC--CceEEEEEEECEEEEEE--cCCcE---EEeccCcEEEeCC--CCce--EEeeCCeEEEEEEEe
Q 022278 109 ANMQENARSALPPH--DVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTYLPP--NFAH--SLRAEGSATLVVFER 176 (300)
Q Consensus 109 v~l~PG~~~~~~~h--~gEEf~yVLeG~v~l~v--~gg~~---~~L~~Gds~yfpa--~~~H--~~~N~~~a~vl~v~~ 176 (300)
.++++|..--.... ....+++|++|.+.+.. .+|++ ..+.+||++=.++ +.++ .....++++++.+.+
T Consensus 9 ~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A~~~~~v~~i~~ 87 (202)
T PRK13918 9 VTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEAVTDSRIDVLNP 87 (202)
T ss_pred eEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEEcCceEEEEEEH
Confidence 34566643322223 45789999999999865 24554 4568999764432 1222 222357788888853
No 232
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=57.66 E-value=6.7 Score=32.61 Aligned_cols=45 Identities=22% Similarity=0.461 Sum_probs=34.3
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEee---EEEEeCC-EEEEccCCcEEEeCCCCc
Q 022278 222 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ---GIYRLGD-SWYPVQAGDVLWMAPFVP 276 (300)
Q Consensus 222 ~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~---G~~~~~g-~~~~v~~GD~i~~~~~~~ 276 (300)
+.+..+.-|..+ .-|++.|+ |++.+|| --+.+++||.+.+.+|..
T Consensus 44 V~V~Nv~NG~Rf----------~TYvI~g~~GSg~I~lNGAAAr~~~~GD~vII~ay~~ 92 (126)
T PRK05449 44 VQIVNVNNGARF----------ETYVIAGERGSGVICLNGAAARLVQVGDLVIIAAYAQ 92 (126)
T ss_pred EEEEECCCCcEE----------EEEEEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECcc
Confidence 455555555543 35888877 9999999 468899999999999864
No 233
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=57.41 E-value=32 Score=31.81 Aligned_cols=48 Identities=13% Similarity=0.342 Sum_probs=36.5
Q ss_pred EEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCce-eEEecC-CccEEEEE
Q 022278 244 GLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ-WYAALG-KTRTRYLL 291 (300)
Q Consensus 244 ~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H-~~~n~G-~e~~~fi~ 291 (300)
++.=+-|.|.+.+||+.|.+.+.|++|+.-|..- .|...+ ..|.+|.+
T Consensus 79 giINIG~~G~i~v~g~~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~ 128 (278)
T COG3717 79 GIINIGGPGTITVDGQEYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYY 128 (278)
T ss_pred eEEeeCCCceEEECCEEEEeccccEEEEecCccceEEeccCCCCcceEEE
Confidence 3445779999999999999999999999998443 555543 35666654
No 234
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=56.45 E-value=4.3 Score=31.30 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.5
Q ss_pred EEeeEEEEeCCEEEEccCCcEEEe
Q 022278 248 LEGQGIYRLGDSWYPVQAGDVLWM 271 (300)
Q Consensus 248 L~G~G~~~~~g~~~~v~~GD~i~~ 271 (300)
.+-+|.+++.|+.|.|+.||++++
T Consensus 58 ak~~Gkir~eGK~Yiv~DGDi~~f 81 (83)
T cd04867 58 AKEAGKYRQEGKDYVVQDGDIIFF 81 (83)
T ss_pred HHHcChhhhhCCceEeeCCeEEEE
Confidence 566889999999999999999975
No 235
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=54.97 E-value=21 Score=31.90 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=44.3
Q ss_pred cceEEEEEEecCCcccCcceeec--cceE------EEE---------------------EEeeEEEEeCCEEEEccCCcE
Q 022278 218 FDFNIHIMDFQPGDFLNVKEVHY--NQHG------LLL---------------------LEGQGIYRLGDSWYPVQAGDV 268 (300)
Q Consensus 218 ~~~~~~~~tl~PG~~~p~~~~H~--~eh~------~~i---------------------L~G~G~~~~~g~~~~v~~GD~ 268 (300)
..++=.+|.+.||...|+ |.|. .|.+ .++ ++|.-.-.--|....++||--
T Consensus 84 ~~yaeKiM~vr~gQvtPm-HrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGes 162 (225)
T COG3822 84 KCYAEKIMHVRPGQVTPM-HRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGES 162 (225)
T ss_pred ccchheeEEeccCCcCcc-cccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCc
Confidence 456667888889999997 4564 3322 122 222222222345667889999
Q ss_pred EEeCCCCceeEEecCCc
Q 022278 269 LWMAPFVPQWYAALGKT 285 (300)
Q Consensus 269 i~~~~~~~H~~~n~G~e 285 (300)
|-++||..|||.+-+..
T Consensus 163 itL~Pg~~HsFwae~g~ 179 (225)
T COG3822 163 ITLPPGLYHSFWAEEGG 179 (225)
T ss_pred EecCCCceeeeeecCCc
Confidence 99999999999987654
No 236
>PF08535 KorB: KorB domain; InterPro: IPR013741 This entry contains several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This domain includes the DNA-binding HTH motif []. ; PDB: 1R71_C.
Probab=53.68 E-value=1 Score=34.92 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=24.0
Q ss_pred cCCcccccccCCCCcceeeecCCCCChhhhhccc
Q 022278 27 CSAPSILDRETSSKPMYWKVTNPTLSPSHLQDLP 60 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver~~~sps~I~~~l 60 (300)
+|+++||+|.|.|++|+|+.=+=+.-|..|.+++
T Consensus 4 ~tq~eIA~~lGks~s~Vs~~l~Ll~lP~~i~~~v 37 (93)
T PF08535_consen 4 WTQEEIAKRLGKSRSWVSNHLALLDLPEEIKELV 37 (93)
T ss_dssp --HHHHHHHTT--HHHHHHHHGGGS--HHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHcCCHHHHHHH
Confidence 5789999999999999999988777777766665
No 237
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=53.61 E-value=87 Score=28.63 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=37.5
Q ss_pred cceEEEEEEecCCcccCcceeeccceEEEEE--------------------EeeEEEEeCCEEEEccCCcE--------E
Q 022278 218 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLL--------------------EGQGIYRLGDSWYPVQAGDV--------L 269 (300)
Q Consensus 218 ~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL--------------------~G~G~~~~~g~~~~v~~GD~--------i 269 (300)
+.++=-++.+.+|...|+|-|..-.|-+.-. +....+..||.++.+.||.. |
T Consensus 85 k~YAEKim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESi 164 (225)
T PF07385_consen 85 KPYAEKIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESI 164 (225)
T ss_dssp --EEEEEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EE
T ss_pred CcchhhheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeE
Confidence 4577778889999999984433333322221 22346677887777766555 4
Q ss_pred EeCCCCceeEEecCCc
Q 022278 270 WMAPFVPQWYAALGKT 285 (300)
Q Consensus 270 ~~~~~~~H~~~n~G~e 285 (300)
-++||.-|+|..-+..
T Consensus 165 TL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 165 TLPPGIYHWFWGEGGD 180 (225)
T ss_dssp EE-TTEEEEEEE-TTS
T ss_pred eeCCCCeeeEEecCCC
Confidence 5566677999987655
No 238
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=52.63 E-value=61 Score=28.95 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=40.4
Q ss_pred EEEecCCcccCcceeeccc---eEEEEE----EeeEEEEeC-------------------CEE--EEccCCcEEEeCCCC
Q 022278 224 IMDFQPGDFLNVKEVHYNQ---HGLLLL----EGQGIYRLG-------------------DSW--YPVQAGDVLWMAPFV 275 (300)
Q Consensus 224 ~~tl~PG~~~p~~~~H~~e---h~~~iL----~G~G~~~~~-------------------g~~--~~v~~GD~i~~~~~~ 275 (300)
...+++|++... |.|+.. =.||+- .|.+.+.+- ..+ ..-++||++..|+..
T Consensus 100 ~ni~~~Gg~h~~-H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L 178 (201)
T TIGR02466 100 VNILPQGGTHSP-HLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWL 178 (201)
T ss_pred EEEcCCCCccCc-eECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCC
Confidence 345579998886 677654 346765 233333221 012 344899999999999
Q ss_pred ceeEEecCCccEEEEE
Q 022278 276 PQWYAALGKTRTRYLL 291 (300)
Q Consensus 276 ~H~~~n~G~e~~~fi~ 291 (300)
.|+..-...+.-+.-+
T Consensus 179 ~H~v~p~~~~~~RISi 194 (201)
T TIGR02466 179 RHEVPPNESEEERISV 194 (201)
T ss_pred ceecCCCCCCCCEEEE
Confidence 9976654434334433
No 239
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=47.80 E-value=55 Score=24.14 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=35.3
Q ss_pred EEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe---CCE---EEEccCCcEEEe
Q 022278 221 NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---GDS---WYPVQAGDVLWM 271 (300)
Q Consensus 221 ~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~---~g~---~~~v~~GD~i~~ 271 (300)
.++..++++|..+- .......+.|+|++|...+.. +|+ ...+.+||++-.
T Consensus 16 ~~~~~~~~~g~~l~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 16 ALEPVRYPAGEVII-RQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGE 71 (120)
T ss_pred hceEEEeCCCCEEE-eCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceech
Confidence 34567788999884 355566688999999998774 343 455678997644
No 240
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=45.76 E-value=22 Score=33.05 Aligned_cols=36 Identities=11% Similarity=0.294 Sum_probs=26.8
Q ss_pred EEEccCCcEEEeCCCCce-eEEecCC--ccEEEEEEeec
Q 022278 260 WYPVQAGDVLWMAPFVPQ-WYAALGK--TRTRYLLYKDV 295 (300)
Q Consensus 260 ~~~v~~GD~i~~~~~~~H-~~~n~G~--e~~~fi~~kd~ 295 (300)
+.+++|||++++.+...| +-.|.++ -..-++.|.++
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~ 250 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSV 250 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecC
Confidence 567899999999999999 4556655 34556667544
No 241
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=45.39 E-value=1.4e+02 Score=26.38 Aligned_cols=69 Identities=10% Similarity=0.059 Sum_probs=42.0
Q ss_pred EEEEcCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcE---EEeccCcEEEeCC---CCce--EEeeCCeEEEEEEEe
Q 022278 108 LANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTYLPP---NFAH--SLRAEGSATLVVFER 176 (300)
Q Consensus 108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v--~gg~~---~~L~~Gds~yfpa---~~~H--~~~N~~~a~vl~v~~ 176 (300)
...+++|..--......+.+++|++|.+.+.. .+|++ ..+.+||.+=..+ +.++ .....++++++.+.+
T Consensus 33 ~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i~~i~~ 111 (226)
T PRK10402 33 LFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECWCLALPM 111 (226)
T ss_pred heeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEEEEEEEH
Confidence 34556665443334566889999999999875 24554 3567898775432 2222 222356677777643
No 242
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=44.85 E-value=5.1 Score=37.56 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=33.8
Q ss_pred ccCCcccccccCCCC-cceeeecCCCCChhh-----hhcccCCccee
Q 022278 26 FCSAPSILDRETSSK-PMYWKVTNPTLSPSH-----LQDLPGFTRSV 66 (300)
Q Consensus 26 ~~~~~~~a~r~~lsk-~~~Sqver~~~sps~-----I~~~lg~trs~ 66 (300)
.=|+.+.|++.|+|- ||+|+|.+|...+|. |+++||.+...
T Consensus 27 ~fS~R~fa~~~G~ss~s~L~~v~~Gkr~Ls~~~~~k~a~~l~L~~~E 73 (271)
T TIGR02147 27 AFSWRFFAEKAGFSSTSYLNDIIKGKKNLTKRMIPKFAEALGLDEKE 73 (271)
T ss_pred CcCHHHHHHHhCCCCHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHH
Confidence 347788999999888 999999999987776 88888776544
No 243
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=44.66 E-value=51 Score=28.18 Aligned_cols=49 Identities=10% Similarity=0.052 Sum_probs=33.7
Q ss_pred EEEEEecCCcccCcceee--ccceEEEEEEeeEEEEe---CCEE---EEccCCcEEEe
Q 022278 222 IHIMDFQPGDFLNVKEVH--YNQHGLLLLEGQGIYRL---GDSW---YPVQAGDVLWM 271 (300)
Q Consensus 222 ~~~~tl~PG~~~p~~~~H--~~eh~~~iL~G~G~~~~---~g~~---~~v~~GD~i~~ 271 (300)
+...+|++|..+- .+.. ...+.|+|++|...+.. ||+. .-+.|||++-.
T Consensus 6 ~~~~~~~kg~~l~-~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 6 VDTVTYRPGAVIL-YPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGE 62 (202)
T ss_pred cceeEecCCCEEE-cCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeech
Confidence 4567888998874 2444 33678999999998754 4553 34589997643
No 244
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=44.50 E-value=3.3 Score=32.03 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=16.7
Q ss_pred EeeEEEEeCCEEEEccCCcEEEeC
Q 022278 249 EGQGIYRLGDSWYPVQAGDVLWMA 272 (300)
Q Consensus 249 ~G~G~~~~~g~~~~v~~GD~i~~~ 272 (300)
+-+|.++..|+.|.|+-||+|++.
T Consensus 59 k~~Gk~r~eGK~YivqDGDIi~f~ 82 (84)
T PF06071_consen 59 KEAGKLRLEGKDYIVQDGDIIHFR 82 (84)
T ss_dssp HHTT-SEEEETT-B--TTEEEEEE
T ss_pred HHcCCccccCCceeEeCCCEEEEE
Confidence 346889999999999999999864
No 245
>COG1813 Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription]
Probab=44.33 E-value=3.2 Score=36.11 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=35.4
Q ss_pred CCcccccccCCCCcceeeecCCCCChhh-----hhcccCCcceeeee
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTLSPSH-----LQDLPGFTRSVYKR 69 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~sps~-----I~~~lg~trs~f~~ 69 (300)
|+++||++.+.+.+-|-.+|||...|++ +-.+||+....-..
T Consensus 94 SqedLA~ki~ek~svI~~iE~g~~~P~~~~akkLEk~LgIkL~e~~~ 140 (165)
T COG1813 94 SQEDLAAKLKEKVSVIRRIERGEATPNIKVAKKLEKLLGIKLVEKVD 140 (165)
T ss_pred CHHHHHHHhcccHHHHHHHHhcccCccHHHHHHHHHHhCceeeeecc
Confidence 7899999999999999999999999998 66677776554443
No 246
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=43.37 E-value=42 Score=28.89 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=32.3
Q ss_pred CCEEEEccCCcEEEeCCCCceeEEecCC--ccEEEEEEee
Q 022278 257 GDSWYPVQAGDVLWMAPFVPQWYAALGK--TRTRYLLYKD 294 (300)
Q Consensus 257 ~g~~~~v~~GD~i~~~~~~~H~~~n~G~--e~~~fi~~kd 294 (300)
+.+...+.|||++.+=||.+|...+.++ ++.+=++.|.
T Consensus 110 ~e~~v~L~~G~faiFfP~e~H~P~c~~~~~~~IkKvVvKv 149 (154)
T COG2731 110 DESTVELNPGMFAIFFPGEPHRPGCNVGVPEPIKKVVVKV 149 (154)
T ss_pred cceEEEeCCCCEEEECCCCccccccccCCcceeEEEEEEE
Confidence 4577889999999999999998888876 7777777775
No 247
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=42.21 E-value=2.4 Score=30.62 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=18.3
Q ss_pred CCcccccccCCCCcceeeecCCC
Q 022278 28 SAPSILDRETSSKPMYWKVTNPT 50 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~ 50 (300)
|+++||+++.++..+|..+|+|.
T Consensus 12 sl~~va~~t~I~~~~l~aiE~~~ 34 (62)
T PF13413_consen 12 SLEDVAEETKISVSYLEAIENGD 34 (62)
T ss_dssp -HHHHHHHCS--HHHHHHHHCT-
T ss_pred CHHHHHHHhCCCHHHHHHHHCcC
Confidence 67899999999999999999984
No 248
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=42.20 E-value=69 Score=28.75 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=21.7
Q ss_pred CCcEEEeccCcEEEeCCCCceEEee
Q 022278 141 SGVSSKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 141 gg~~~~L~~Gds~yfpa~~~H~~~N 165 (300)
.|....|+||+++-+|||..|++..
T Consensus 151 ag~~lkL~PGesitL~Pg~~HsFwa 175 (225)
T COG3822 151 AGSQLKLSPGESITLPPGLYHSFWA 175 (225)
T ss_pred cceeEEECCCCcEecCCCceeeeee
Confidence 3455689999999999999999987
No 249
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=42.00 E-value=83 Score=31.61 Aligned_cols=70 Identities=10% Similarity=0.003 Sum_probs=48.9
Q ss_pred ceEEEEEEecCCccc-Ccc-eeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 219 DFNIHIMDFQPGDFL-NVK-EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 219 ~~~~~~~tl~PG~~~-p~~-~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
.+++++. .++.++ ... -...=++-+++-+|.+.+.-.=-+.+|++||++.||-|+.+.+.-. +++.+-++
T Consensus 132 G~ai~~y--~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~-~gp~rgyi 203 (438)
T PRK05341 132 GMAIHLY--AANRSMQDRYFYNADGELLIVPQQGRLRLATELGVLDVEPGEIAVIPRGVKFRVELP-DGPARGYV 203 (438)
T ss_pred ccEEEEE--eCCCCcccceeecCCCCEEEEEEeCCEEEEEeccceEecCCCEEEEcCccEEEEecC-CCCeeEEE
Confidence 3444443 355555 221 2234446789999999999998899999999999999999888743 34544433
No 250
>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....
Probab=41.45 E-value=29 Score=27.34 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEEeCCEEEEccCCcEEEeCCC
Q 022278 252 GIYRLGDSWYPVQAGDVLWMAPF 274 (300)
Q Consensus 252 G~~~~~g~~~~v~~GD~i~~~~~ 274 (300)
+++.++|+-|.|++||++.++.-
T Consensus 3 AIi~~ggkQykV~~gd~i~v~~l 25 (96)
T PF00829_consen 3 AIIEIGGKQYKVEEGDVIDVERL 25 (96)
T ss_dssp EEEESSSEEEEESSSEEEEEEST
T ss_pred EEEEECCEEEEEeCCCEEEECCc
Confidence 57889999999999999999743
No 251
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=40.18 E-value=2.2e+02 Score=23.83 Aligned_cols=56 Identities=21% Similarity=0.181 Sum_probs=44.1
Q ss_pred eeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeE---EecCCccEEEEEE
Q 022278 237 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWY---AALGKTRTRYLLY 292 (300)
Q Consensus 237 ~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~---~n~G~e~~~fi~~ 292 (300)
+.-++.=..+|++|+=++++|++.+.-.+|+++.++.+.|=.. .++-++|+.=+..
T Consensus 19 ~~~y~p~i~~vlQG~K~~~~g~~~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 19 PCVYEPSICIVLQGSKRVHLGDQVFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred ceecCCeEEEEEeeeEEEEECCceEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 3445556789999999999999999999999999999998744 4445566654443
No 252
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=39.75 E-value=67 Score=24.99 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=33.5
Q ss_pred eEEEEEEeeEEEEeCCE--EEEccCCcEEEeCCCCceeEEecCCccEEEE
Q 022278 243 HGLLLLEGQGIYRLGDS--WYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 290 (300)
Q Consensus 243 h~~~iL~G~G~~~~~g~--~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi 290 (300)
++.-+==|.|.+.-+|+ ...|++||.+..+.|-.-.+..- ++.+.++
T Consensus 36 ~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~-~~~y~i~ 84 (93)
T cd00320 36 EGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLD-GEEYLIL 84 (93)
T ss_pred EEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEEC-CEEEEEE
Confidence 45556667777777775 55699999999999987777763 3444444
No 253
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=39.68 E-value=58 Score=30.68 Aligned_cols=41 Identities=7% Similarity=-0.007 Sum_probs=35.8
Q ss_pred EEEEEEeeEEEEe-CCEEEEccCCcEEEeCCCCceeEEecCC
Q 022278 244 GLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAALGK 284 (300)
Q Consensus 244 ~~~iL~G~G~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~G~ 284 (300)
.+++.+|...+.- ||++..+.++.++++|.+..|.+.|.-.
T Consensus 41 li~v~~G~~~i~~~~g~~l~i~~p~~~~~p~~~~~~~~~~~~ 82 (291)
T PRK15186 41 LIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHITMEET 82 (291)
T ss_pred EEEeccceEEEEeCCCceEEeCCCeEEEEeCCcEEEEEeccc
Confidence 5788888888875 6678999999999999999999999864
No 254
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=39.09 E-value=1.6e+02 Score=24.80 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=35.0
Q ss_pred CCceEEEEEEECEEEEEE--cCCcE---EEeccCcEEEeCC---CCc----eEEeeCCeEEEEEEEe
Q 022278 122 HDVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTYLPP---NFA----HSLRAEGSATLVVFER 176 (300)
Q Consensus 122 h~gEEf~yVLeG~v~l~v--~gg~~---~~L~~Gds~yfpa---~~~----H~~~N~~~a~vl~v~~ 176 (300)
...+.+++|++|.+.+.. .+|++ ..+.+||.+=..+ +.+ ......++++++.+.+
T Consensus 9 ~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~ 75 (193)
T TIGR03697 9 DPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPI 75 (193)
T ss_pred CCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeH
Confidence 345779999999999865 34554 4679999764322 211 2233356788888744
No 255
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=38.95 E-value=76 Score=26.67 Aligned_cols=70 Identities=10% Similarity=0.075 Sum_probs=43.1
Q ss_pred EEEEcCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcEE---EeccCcEEEeCCCC-----ceEEeeCCeEEEEEEEee
Q 022278 108 LANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVSS---KLMVDSYTYLPPNF-----AHSLRAEGSATLVVFERR 177 (300)
Q Consensus 108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v--~gg~~~---~L~~Gds~yfpa~~-----~H~~~N~~~a~vl~v~~~ 177 (300)
...+++|..--......+.+++|++|.+.+.. .+|++. .+.+||++=..+-. .++...-++++++++.+.
T Consensus 25 ~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 104 (214)
T COG0664 25 VRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRK 104 (214)
T ss_pred eEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEEcceEEEEEecHH
Confidence 44456663332224455669999999999976 234443 46699998776533 223333566888877543
No 256
>PRK11396 hypothetical protein; Provisional
Probab=38.41 E-value=2.9e+02 Score=24.63 Aligned_cols=98 Identities=11% Similarity=-0.070 Sum_probs=59.7
Q ss_pred CCCCCCcccC-CceeEEEEee-CCC-CCcceEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEe-CC-EEEEccCCc
Q 022278 193 TDKQPLLETP-GEVFQLRKLL-PQA-VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-GD-SWYPVQAGD 267 (300)
Q Consensus 193 ~~d~~~~~~~-g~~~~~~~l~-p~~-~~~~~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~-~g-~~~~v~~GD 267 (300)
..++|..+-. |++.+.+.+. |.. ..|++-+.+-+++-.+. +...-+.+-.+.+|+|.|+... ++ ..+.+++++
T Consensus 6 ~~~mp~~~WkNGgG~TrEI~~~P~~~~dF~WRiSiA~I~~~Gp--FS~FpGidR~i~lL~G~g~~L~~~~~~~~~l~~~~ 83 (191)
T PRK11396 6 MRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIAANGE--FSLFPGMERIVTLLEGGEMFLESADRFNHTLKPLQ 83 (191)
T ss_pred HhHCCcccccCCCeEEEEEEEcCCCCCCceEEEEEEEecCCCC--CCCCCCccEEEEEEECCCEEEeeCCccceecCCCC
Confidence 3455644433 5665666665 653 35666666666665444 4445677788999999776554 55 346678888
Q ss_pred EEEeCCCCceeEEecCC---ccEEEEEE
Q 022278 268 VLWMAPFVPQWYAALGK---TRTRYLLY 292 (300)
Q Consensus 268 ~i~~~~~~~H~~~n~G~---e~~~fi~~ 292 (300)
....+...+=..+.++. .+|-.++=
T Consensus 84 p~~F~Gd~~v~a~L~~G~v~~dfNvM~r 111 (191)
T PRK11396 84 PFAFAADQVVKAKLTAGQMSMDFNIMTR 111 (191)
T ss_pred CeEeCCCCeeEEEECCCCeEEEEEEEec
Confidence 77776666555555433 35555553
No 257
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=38.21 E-value=46 Score=29.82 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=29.7
Q ss_pred CCcEEEeccCcEEEeCCCCceEEee----CCeEEEEEEEee
Q 022278 141 SGVSSKLMVDSYTYLPPNFAHSLRA----EGSATLVVFERR 177 (300)
Q Consensus 141 gg~~~~L~~Gds~yfpa~~~H~~~N----~~~a~vl~v~~~ 177 (300)
|+...+|-+||-+.||+..-|.+.. ..-|.+.|+...
T Consensus 142 g~h~VklPAGdLVlypStSlH~VtPVTRg~R~asffW~qsl 182 (229)
T COG3128 142 GNHRVKLPAGDLVLYPSTSLHEVTPVTRGERFASFFWIQSL 182 (229)
T ss_pred cceEEeccCCCEEEcccccceeccccccCceEEEeeehHHH
Confidence 5566789999999999999999874 456778888543
No 258
>PF10949 DUF2777: Protein of unknown function (DUF2777); InterPro: IPR024488 This family of proteins with unknown function appears to be restricted to Bacillaceae.
Probab=38.07 E-value=36 Score=30.19 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=35.0
Q ss_pred ceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeE
Q 022278 236 KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWY 279 (300)
Q Consensus 236 ~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~ 279 (300)
++...|..+.|. +.|.+..+|+.++++-||.|.+.--...+|
T Consensus 52 ~~~~~W~~g~l~--~~~~v~~~~e~~~L~~ge~IRi~K~l~~~y 93 (185)
T PF10949_consen 52 FRDGRWMKGILF--DQGIVSIDGEQIPLSNGESIRIRKKLFDPY 93 (185)
T ss_pred EECCcEEEEEEe--cCceEEeCCeEEecCCCCEEEEeeccccHH
Confidence 456678888877 999999999999999999999986655543
No 259
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=37.72 E-value=44 Score=26.68 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEeCCEEEEccCCcEEEeC
Q 022278 252 GIYRLGDSWYPVQAGDVLWMA 272 (300)
Q Consensus 252 G~~~~~g~~~~v~~GD~i~~~ 272 (300)
+++..+|+-|.|++||++.+.
T Consensus 2 AIi~~gGkQykV~~Gd~i~Ve 22 (101)
T TIGR00061 2 AIVEIGGKQYKVEEGQTVRIE 22 (101)
T ss_pred EEEEECCEEEEEeCCCEEEEc
Confidence 578899999999999999986
No 260
>KOG1686 consensus Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis]
Probab=37.39 E-value=41 Score=28.63 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=28.2
Q ss_pred EeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCc
Q 022278 249 EGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT 285 (300)
Q Consensus 249 ~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e 285 (300)
+|=+++.+++.-+.|..||.|||+-+.| .|.+|+
T Consensus 25 ~~favv~v~srq~kvs~gd~iy~eg~~p---~nv~d~ 58 (151)
T KOG1686|consen 25 SGFAVVSVGSRQRKVSSGDTIYTEGLKP---KNVLDS 58 (151)
T ss_pred CccEEEEEcceeEEecCCCeeeecCccc---cccccc
Confidence 5668899999999999999999999876 455543
No 261
>PRK05573 rplU 50S ribosomal protein L21; Validated
Probab=37.38 E-value=45 Score=26.65 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEeCCEEEEccCCcEEEeCC
Q 022278 252 GIYRLGDSWYPVQAGDVLWMAP 273 (300)
Q Consensus 252 G~~~~~g~~~~v~~GD~i~~~~ 273 (300)
+++.++|+-|.|++||++.++-
T Consensus 3 AIi~~gGkQykV~~Gd~i~v~~ 24 (103)
T PRK05573 3 AIIKTGGKQYKVEEGDVIKVEK 24 (103)
T ss_pred EEEEECCEEEEEeCCCEEEEcc
Confidence 5788999999999999999974
No 262
>PF07022 Phage_CI_repr: Bacteriophage CI repressor helix-turn-helix domain; InterPro: IPR010744 This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2FJR_B.
Probab=37.18 E-value=4.3 Score=29.46 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=22.8
Q ss_pred CccCCcccccccCCCCccee--eecCCCCChhh----hhcccCCcc
Q 022278 25 GFCSAPSILDRETSSKPMYW--KVTNPTLSPSH----LQDLPGFTR 64 (300)
Q Consensus 25 ~~~~~~~~a~r~~lsk~~~S--qver~~~sps~----I~~~lg~tr 64 (300)
++-+..++|+++|+|++-+| ...|+.. |.. |+..+|++.
T Consensus 11 g~~~~~~lA~~lgis~st~s~~~~~r~~~-P~~~l~~ia~~~gvsl 55 (66)
T PF07022_consen 11 GVKSDKELAERLGISKSTLSNNWKKRGSI-PAEWLIKIALETGVSL 55 (66)
T ss_dssp T-SSCHHHHCCTT--HHHHH-HHHHSSS---HHHHHHHHHHH---H
T ss_pred CCCCHHHHHHHhCcCHHHhhHHHHhCCCC-CHHHHHHHHHHHCcCH
Confidence 45577899999999999999 4556654 544 666666554
No 263
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=36.92 E-value=19 Score=35.35 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=24.0
Q ss_pred EEeeEEEEeCCEEEEccCCcEEEeCCC
Q 022278 248 LEGQGIYRLGDSWYPVQAGDVLWMAPF 274 (300)
Q Consensus 248 L~G~G~~~~~g~~~~v~~GD~i~~~~~ 274 (300)
.+-.|.+++.|+.|.|+-||+|++.-+
T Consensus 341 ~k~~Gk~r~eGK~YivqDGDIi~f~fn 367 (368)
T TIGR00092 341 AKKGGLMRLEGKYYVVDDGDVLFFAFN 367 (368)
T ss_pred HHhcCchhhcCCeEEeeCCeEEEEecC
Confidence 566899999999999999999998755
No 264
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=36.90 E-value=16 Score=20.94 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=12.3
Q ss_pred CCceeEEecCCccEEEE
Q 022278 274 FVPQWYAALGKTRTRYL 290 (300)
Q Consensus 274 ~~~H~~~n~G~e~~~fi 290 (300)
-|--||+|.|++.+-|+
T Consensus 4 kCiNWFE~~ge~r~lyL 20 (22)
T PF08452_consen 4 KCINWFESRGEERFLYL 20 (22)
T ss_pred EEeehhhhCCceeEEEE
Confidence 46679999997765544
No 265
>PHA02984 hypothetical protein; Provisional
Probab=36.04 E-value=98 Score=29.14 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=37.7
Q ss_pred EEEEeeEEEEeCC----EEEEccCCcEEEeCCCCceeEEecC----------CccEEEEEEeec
Q 022278 246 LLLEGQGIYRLGD----SWYPVQAGDVLWMAPFVPQWYAALG----------KTRTRYLLYKDV 295 (300)
Q Consensus 246 ~iL~G~G~~~~~g----~~~~v~~GD~i~~~~~~~H~~~n~G----------~e~~~fi~~kd~ 295 (300)
.+|+|+..+.... ....|++|+..+|.-+-.|...--- +.++.|++|||+
T Consensus 98 lCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~Vi~y~v~~pfihykNv 161 (286)
T PHA02984 98 LCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLAVITYTSNCPFIHYKNI 161 (286)
T ss_pred EEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeCCCceEEEEEEEEecceEEEeccE
Confidence 4578888876443 4578999999999999999876431 246778888885
No 266
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=36.02 E-value=1.9e+02 Score=25.42 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=42.0
Q ss_pred EEEEcCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcE---EEeccCcEEEeC---CCCce--EEeeCCeEEEEEEEe
Q 022278 108 LANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVS---SKLMVDSYTYLP---PNFAH--SLRAEGSATLVVFER 176 (300)
Q Consensus 108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~gg~~---~~L~~Gds~yfp---a~~~H--~~~N~~~a~vl~v~~ 176 (300)
..++++|..--......+.+++|++|.+.+.. .+|+. ..+.+||.+=.. .+.++ .+...++++++.+.+
T Consensus 32 ~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i~~ 109 (236)
T PRK09392 32 LQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMIPA 109 (236)
T ss_pred eeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEEeH
Confidence 45566765443334567899999999999865 23333 356777765321 12333 333467888888854
No 267
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=35.87 E-value=91 Score=28.45 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=25.1
Q ss_pred CcEEEeccCcEEEeCCCCceEEee-CCeEE---EEEE
Q 022278 142 GVSSKLMVDSYTYLPPNFAHSLRA-EGSAT---LVVF 174 (300)
Q Consensus 142 g~~~~L~~Gds~yfpa~~~H~~~N-~~~a~---vl~v 174 (300)
..+..+++|+.+.||+...|...- ....| +.|+
T Consensus 140 ~~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~~~Wi 176 (226)
T PRK05467 140 EHRVKLPAGDLVLYPSTSLHRVTPVTRGVRVASFFWI 176 (226)
T ss_pred cEEEecCCCeEEEECCCCceeeeeccCccEEEEEecH
Confidence 356688999999999999999986 44444 4455
No 268
>PLN02868 acyl-CoA thioesterase family protein
Probab=34.30 E-value=92 Score=30.57 Aligned_cols=69 Identities=13% Similarity=0.061 Sum_probs=40.8
Q ss_pred EEEEcCCCcCCCCCCCceEEEEEEECEEEEEEc--CCcE--EEeccCcEEEeCC-CCce--EEeeCCeEEEEEEEe
Q 022278 108 LANMQENARSALPPHDVERFIFVVQGSAMLTNA--SGVS--SKLMVDSYTYLPP-NFAH--SLRAEGSATLVVFER 176 (300)
Q Consensus 108 lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~--gg~~--~~L~~Gds~yfpa-~~~H--~~~N~~~a~vl~v~~ 176 (300)
..++++|..--......+.+++|++|++++... +|+. ..+++||++=..- +.++ ..+..++++++.+.+
T Consensus 33 ~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~l~~~~~~~~~~A~~d~~v~~ip~ 108 (413)
T PLN02868 33 PKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYGLSGSVHSADVVAVSELTCLVLPH 108 (413)
T ss_pred EEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehhhCCCCcccEEEECCCEEEEEEcH
Confidence 345677755433345667899999999998751 2222 5678999877431 1111 111245677666643
No 269
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=33.73 E-value=42 Score=28.17 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=19.4
Q ss_pred EEEEccCCcEEEeCCCCce-eEEecCCc
Q 022278 259 SWYPVQAGDVLWMAPFVPQ-WYAALGKT 285 (300)
Q Consensus 259 ~~~~v~~GD~i~~~~~~~H-~~~n~G~e 285 (300)
...+++|||++++.+...| +-.|.++.
T Consensus 180 ~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 180 VPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp EEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred EEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 4567899999999999999 45555543
No 270
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=32.57 E-value=1.4e+02 Score=29.94 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=49.2
Q ss_pred ceEEEEEEecCCccc-Ccc-eeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 219 DFNIHIMDFQPGDFL-NVK-EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 219 ~~~~~~~tl~PG~~~-p~~-~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
.+++++. .++.++ ... -...=++-+++-+|.+.+.-.=-...|++||++.||-|+.+.+.-.| +.+.++
T Consensus 126 G~ai~iy--~~~~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~g--p~rgyi 196 (429)
T TIGR01015 126 GLAIHIY--LCNASMENRAFYNADGDFLIVPQQGALLITTEFGRLLVEPNEICVIPRGVRFRVTVLE--PARGYI 196 (429)
T ss_pred CceEEEE--eCCCCcccceeeccCCCEEEEEEeCcEEEEEeccceEecCCCEEEecCccEEEEeeCC--CceEEE
Confidence 4454444 456665 221 22234467889999999998888899999999999999999888754 555444
No 271
>PF04814 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N terminus; InterPro: IPR006899 This domain consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerisation sequence [] and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3) [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2GYP_B 1IC8_B 2H8R_B 1G2Y_D 1F93_H 1G39_D 1G2Z_B 1JB6_B.
Probab=32.41 E-value=5.9 Score=34.91 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=14.9
Q ss_pred CCcccccccCCCCcceeee
Q 022278 28 SAPSILDRETSSKPMYWKV 46 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqv 46 (300)
+|.+|++.||+|+++|||-
T Consensus 133 sQ~~V~q~TGisQS~lSq~ 151 (180)
T PF04814_consen 133 SQREVVQVTGISQSHLSQH 151 (180)
T ss_dssp -CHHHHHHHT--HHHHHHH
T ss_pred cHHHHHHHhhhhHHHHHHH
Confidence 6789999999999999996
No 272
>PTZ00491 major vault protein; Provisional
Probab=32.36 E-value=7.1e+02 Score=27.34 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=26.2
Q ss_pred ceEEEEEEE----------CEEEEEEcCCcEEEeccCcEEEe
Q 022278 124 VERFIFVVQ----------GSAMLTNASGVSSKLMVDSYTYL 155 (300)
Q Consensus 124 gEEf~yVLe----------G~v~l~v~gg~~~~L~~Gds~yf 155 (300)
.-+++||++ |++.+.. |.++|-|++|++++-
T Consensus 278 ~~qyc~V~dPv~~~G~~~tG~~r~v~-G~~SffLqpgEeL~~ 318 (850)
T PTZ00491 278 ARQYCVILNPVGDDGHNRFGAKELRK-GECSFFLQPGESLEG 318 (850)
T ss_pred CCceEEEECCccccCccccccEEEEe-cCccccCCCCCeeec
Confidence 345678888 9999998 889999999999886
No 273
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=32.15 E-value=22 Score=34.67 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=15.9
Q ss_pred EEccCCcEEEeCCCCceeEEe
Q 022278 261 YPVQAGDVLWMAPFVPQWYAA 281 (300)
Q Consensus 261 ~~v~~GD~i~~~~~~~H~~~n 281 (300)
..++||+.+|+++|.+|+|--
T Consensus 252 v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 252 VELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEE-TT-EEEEHTTHHEEEEE
T ss_pred EEecCCceEEecCCCcccccc
Confidence 577888999999999998754
No 274
>PLN02868 acyl-CoA thioesterase family protein
Probab=31.95 E-value=1.9e+02 Score=28.42 Aligned_cols=51 Identities=8% Similarity=0.066 Sum_probs=36.1
Q ss_pred eEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC---C--EEEEccCCcEEEe
Q 022278 220 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---D--SWYPVQAGDVLWM 271 (300)
Q Consensus 220 ~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~---g--~~~~v~~GD~i~~ 271 (300)
-.++..++++|..|- .+-..-.+.|+|++|+..+... | ....+++||++-.
T Consensus 29 ~~~~~~~~~~Ge~I~-~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 29 EVVVPKRYGKGEYVV-REGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred HhceEEEECCCCEEE-eCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 345678899999884 3455556789999999977652 2 2355689998663
No 275
>PLN02658 homogentisate 1,2-dioxygenase
Probab=31.78 E-value=2.8e+02 Score=27.96 Aligned_cols=70 Identities=9% Similarity=0.017 Sum_probs=49.3
Q ss_pred ceEEEEEEecCCcccC-c-ceeeccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCccEEEEE
Q 022278 219 DFNIHIMDFQPGDFLN-V-KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 219 ~~~~~~~tl~PG~~~p-~-~~~H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 291 (300)
.+++++. .++.++. . --...=+.-+++-+|.+.+.-.=-+.+|++||++.||-|+...+.-.. ++.+.++
T Consensus 125 G~ai~iy--~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~~-gp~rgyv 196 (435)
T PLN02658 125 GYAIHMY--VANKSMDDCAFCNADGDFLIVPQQGRLWIKTELGKLQVSPGEIVVIPRGFRFAVDLPD-GPSRGYV 196 (435)
T ss_pred CcEEEEE--eCCCCCccceeecCCCCEEEEEEeCCEEEEEeccceEecCCCEEEecCccEEEEecCC-CCeeEEE
Confidence 4554444 3566652 1 123344567888999999999988999999999999999998877432 4555544
No 276
>PHA02890 hypothetical protein; Provisional
Probab=31.10 E-value=1.2e+02 Score=28.26 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=37.2
Q ss_pred EEEEeeEEEEeCC----EEEEccCCcEEEeCCCCceeEEe--cC------CccEEEEEEeec
Q 022278 246 LLLEGQGIYRLGD----SWYPVQAGDVLWMAPFVPQWYAA--LG------KTRTRYLLYKDV 295 (300)
Q Consensus 246 ~iL~G~G~~~~~g----~~~~v~~GD~i~~~~~~~H~~~n--~G------~e~~~fi~~kd~ 295 (300)
.+|+|++.+.... ..+.|++||...|.-+-.|...- .+ +.++.|++||++
T Consensus 97 lCL~Gs~~In~~~~d~~iS~~I~kGeaF~mdv~t~H~i~TKnl~L~Viky~vd~pfiy~kNV 158 (278)
T PHA02890 97 ACIEGSCKINVNIGDREISDHIHENQGFIMDVGLDHAIDSDNVGLFITKFEVDAHIFYGQNV 158 (278)
T ss_pred EEeCCeEEEEEecCCceeeeeeecCceEEEEccceEEEEccceeEEEEEEEecceEEEecce
Confidence 3488988877543 45789999999999999997764 11 236677888876
No 277
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=31.10 E-value=71 Score=27.03 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=29.2
Q ss_pred CCEEEEccCCcEEEeCCCCceeEEecCCccEEEEEEe
Q 022278 257 GDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK 293 (300)
Q Consensus 257 ~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k 293 (300)
.+.+..++|||++.+-|+..|.-. +.++.+=+++|
T Consensus 104 ~~~~v~l~~G~F~iffP~daH~P~--~~~~ikK~VvK 138 (149)
T PRK10202 104 CGETVEVHEGQIVICDIHEAYRFI--CNNAVKKVVLK 138 (149)
T ss_pred CCcEEEeCCCeEEEECCcccccCC--CCCcEEEEEEE
Confidence 345899999999999999999876 66777777777
No 278
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=30.52 E-value=30 Score=33.81 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=35.6
Q ss_pred EEEEEEecCCcccC----cceeeccceEEE-EE--------------Eee--EEEEeCCEEEEccCCcEEEeCCC
Q 022278 221 NIHIMDFQPGDFLN----VKEVHYNQHGLL-LL--------------EGQ--GIYRLGDSWYPVQAGDVLWMAPF 274 (300)
Q Consensus 221 ~~~~~tl~PG~~~p----~~~~H~~eh~~~-iL--------------~G~--G~~~~~g~~~~v~~GD~i~~~~~ 274 (300)
.+|-.++..|..-+ ..|+ ..+.++. -- +.+ |.+++.|+.|.|+-||+|.+.-+
T Consensus 290 evrawti~~GstA~~aAg~IHs-D~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~fn 363 (364)
T PRK09601 290 EVRAWTIKKGTTAPQAAGVIHT-DFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRFN 363 (364)
T ss_pred eEEEEEeCCCCchHHHhhcchh-hHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEcC
Confidence 45777787777642 2222 2333332 12 355 99999999999999999998654
No 279
>PF05986 ADAM_spacer1: ADAM-TS Spacer 1; InterPro: IPR010294 This domain represents the Spacer-1 domain from the ADAM-TS family of metalloproteinases []. A cellular disintegrin and metalloproteinase (ADAM) is a family of genes with structural homology to the snake venom metalloproteinases and disintegrins []. There is variation amongst members of the family, however, all have a similar domain organisation comprising a preproregion, a reprolysin-type catalytic domain, a disintegrin-like domain, a thrombospondin type-1 (TS) module, a cysteine-rich domain, a spacer domain without cysteine residues, and a COOH-terminal TS module [, ]. They are involved in embryogenesis and have been implicated in some cancers and inflammatory diseases [].; GO: 0004222 metalloendopeptidase activity, 0031012 extracellular matrix
Probab=30.45 E-value=1.6e+02 Score=23.52 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=27.8
Q ss_pred EEEEecCCcccCcceeeccceEEEEEE-eeEEEEeCCEEEEccCCcE
Q 022278 223 HIMDFQPGDFLNVKEVHYNQHGLLLLE-GQGIYRLGDSWYPVQAGDV 268 (300)
Q Consensus 223 ~~~tl~PG~~~p~~~~H~~eh~~~iL~-G~G~~~~~g~~~~v~~GD~ 268 (300)
.++++.+|+.-=.........-++.|+ .+|.|.+||.|..-.+|.+
T Consensus 18 ~v~~IP~GA~nI~I~e~~~s~n~Lalk~~~g~y~lNg~~~i~~~~~~ 64 (114)
T PF05986_consen 18 KVVTIPAGARNIRITERRPSSNYLALKNSDGKYVLNGNWVISWPGTY 64 (114)
T ss_pred EEEECCCCceEEEEEEeecCccEEEEEecCCcEEEcCCccccCCcCE
Confidence 466777776521112222222344455 6799999999998777773
No 280
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=30.08 E-value=5 Score=30.24 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=20.3
Q ss_pred CCCccCCcccccccCCCCcceeeecC
Q 022278 23 DGGFCSAPSILDRETSSKPMYWKVTN 48 (300)
Q Consensus 23 ~~~~~~~~~~a~r~~lsk~~~Sqver 48 (300)
+++.+|.++||+++++|..++.|+=+
T Consensus 22 ~~~~~s~~eiA~~~~i~~~~l~kil~ 47 (83)
T PF02082_consen 22 DGKPVSSKEIAERLGISPSYLRKILQ 47 (83)
T ss_dssp TSC-BEHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44559999999999999999988743
No 281
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=29.77 E-value=86 Score=26.32 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=20.9
Q ss_pred EEEEccCCcEEEeCCCCceeEE--ecCCccEEEEEEe
Q 022278 259 SWYPVQAGDVLWMAPFVPQWYA--ALGKTRTRYLLYK 293 (300)
Q Consensus 259 ~~~~v~~GD~i~~~~~~~H~~~--n~G~e~~~fi~~k 293 (300)
....+++||++.+-|+..|.-. .-+.++.+=+++|
T Consensus 113 ~~i~l~~g~f~iffP~d~H~p~~~~~~~~~v~K~V~K 149 (153)
T PF04074_consen 113 SFITLKPGDFAIFFPEDAHRPGCAVDEPEPVRKVVFK 149 (153)
T ss_dssp EEEEE-TTEEEEE-TT--EEEEE-BTT--B-EEEEEE
T ss_pred eEEEEcCCEEEEECCCccccccccCCCCceEEEEEEE
Confidence 4567899999999999999844 3334677777766
No 282
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=29.49 E-value=1.6e+02 Score=25.96 Aligned_cols=65 Identities=9% Similarity=0.020 Sum_probs=41.9
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEeeEEEEe---CCEEE---EccCCcEEEeCC-----CCceeEEecCCccE
Q 022278 222 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---GDSWY---PVQAGDVLWMAP-----FVPQWYAALGKTRT 287 (300)
Q Consensus 222 ~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~---~g~~~---~v~~GD~i~~~~-----~~~H~~~n~G~e~~ 287 (300)
.+...+++|..+- .+.....+.++|++|...+.. +|+.. -+.+||++-... ..+..+.+..+..+
T Consensus 31 ~~~~~~~kge~l~-~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i 106 (226)
T PRK10402 31 TELFHFLAREYIV-QEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECWC 106 (226)
T ss_pred hhheeeCCCCEEE-cCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEEE
Confidence 4466788998874 355566789999999998764 56543 467999765332 22334555544333
No 283
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=29.05 E-value=2.5e+02 Score=21.02 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=22.1
Q ss_pred ccCCcEEEeCC-CCceeEEecCCccEEEEE
Q 022278 263 VQAGDVLWMAP-FVPQWYAALGKTRTRYLL 291 (300)
Q Consensus 263 v~~GD~i~~~~-~~~H~~~n~G~e~~~fi~ 291 (300)
-++|++++.++ ...|+....+...-++++
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v~~~~~R~~l 95 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPVGEGGRRYSL 95 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE-EESEEEEE
T ss_pred CCCCEEEEEeCCCCeecCcccCCCCCEEEE
Confidence 78999999999 999999888555555554
No 284
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=28.66 E-value=79 Score=28.25 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=33.5
Q ss_pred EeeEEEEeCCEEEEccCCcEEEeC--CCCceeE-----EecCC-ccEEEEEEeec
Q 022278 249 EGQGIYRLGDSWYPVQAGDVLWMA--PFVPQWY-----AALGK-TRTRYLLYKDV 295 (300)
Q Consensus 249 ~G~G~~~~~g~~~~v~~GD~i~~~--~~~~H~~-----~n~G~-e~~~fi~~kd~ 295 (300)
+-.+.++++|-.|++..||++-+= =|++=-+ ++||+ .-|.||||.|-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQ 87 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQ 87 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCc
Confidence 445667888999999999987542 2333322 46777 67999999984
No 285
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=28.40 E-value=8.7 Score=32.61 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCCccCCcccccccCCCCcceeeecC
Q 022278 23 DGGFCSAPSILDRETSSKPMYWKVTN 48 (300)
Q Consensus 23 ~~~~~~~~~~a~r~~lsk~~~Sqver 48 (300)
+++.+|.++||++.++|+.|+.|+-.
T Consensus 22 ~~~~~s~~~IA~~~~is~~~L~kil~ 47 (150)
T COG1959 22 GGGPVSSAEIAERQGISPSYLEKILS 47 (150)
T ss_pred CCCcccHHHHHHHhCcCHHHHHHHHH
Confidence 44489999999999999999999753
No 286
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=28.39 E-value=1.1e+02 Score=28.19 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=37.5
Q ss_pred CCcccCcceee-ccceEEEEEEeeEEEEe-CCEEE-----EccCC-cEEEeCCCCceeEEecC
Q 022278 229 PGDFLNVKEVH-YNQHGLLLLEGQGIYRL-GDSWY-----PVQAG-DVLWMAPFVPQWYAALG 283 (300)
Q Consensus 229 PG~~~p~~~~H-~~eh~~~iL~G~G~~~~-~g~~~-----~v~~G-D~i~~~~~~~H~~~n~G 283 (300)
|++.+..|-|. +.-+.+-||+|+..+.. |++|. .+.+. +.-+++|+..|.+....
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 66776654442 33368999999977764 66553 34443 45479999999999873
No 287
>CHL00075 rpl21 ribosomal protein L21
Probab=28.34 E-value=71 Score=25.80 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=19.2
Q ss_pred EEEEeCCEEEEccCCcEEEeC
Q 022278 252 GIYRLGDSWYPVQAGDVLWMA 272 (300)
Q Consensus 252 G~~~~~g~~~~v~~GD~i~~~ 272 (300)
+++..+|+-|.|++||++.+.
T Consensus 5 AIi~~gGkQykV~~Gd~i~ve 25 (108)
T CHL00075 5 AIIEAGGKQLWVEPGRFYDIN 25 (108)
T ss_pred EEEEECCEEEEEeCCCEEEEE
Confidence 678899999999999999886
No 288
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=28.01 E-value=22 Score=38.20 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCcEEEeccCcEEEeCCCCceEEee
Q 022278 141 SGVSSKLMVDSYTYLPPNFAHSLRA 165 (300)
Q Consensus 141 gg~~~~L~~Gds~yfpa~~~H~~~N 165 (300)
.+=++.=.-||.+++|||.||+++|
T Consensus 797 e~WtfvQ~LGdAVfIPAGaPHQVrN 821 (889)
T KOG1356|consen 797 EPWTFVQFLGDAVFIPAGAPHQVRN 821 (889)
T ss_pred CccchhhcccceEEecCCCcHHhhh
Confidence 4445667789999999999999998
No 289
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=27.96 E-value=8 Score=28.23 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=21.2
Q ss_pred CCcccccccCCCCcceeeecCCCC
Q 022278 28 SAPSILDRETSSKPMYWKVTNPTL 51 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~~~ 51 (300)
++.+||+++|+|++-+|.+-||..
T Consensus 2 t~~~iA~~~gvS~~TVSr~ln~~~ 25 (70)
T smart00354 2 TIKDVARLAGVSKATVSRVLNGNG 25 (70)
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCC
Confidence 567899999999999999988864
No 290
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=27.77 E-value=4.4 Score=26.39 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=16.2
Q ss_pred cCCcccccccCCCCcceeeecC
Q 022278 27 CSAPSILDRETSSKPMYWKVTN 48 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~~~Sqver 48 (300)
.++++||+++|+|.++++++-+
T Consensus 9 ~~l~~iA~~~g~S~~~f~r~Fk 30 (42)
T PF00165_consen 9 LTLEDIAEQAGFSPSYFSRLFK 30 (42)
T ss_dssp --HHHHHHHHTS-HHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 6788999999999998887654
No 291
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=26.94 E-value=2.1e+02 Score=24.64 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=45.5
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEeeEEEEeCCEE-EEccCCcEE----E----eCCCCceeEEecCCccEEEEEE
Q 022278 222 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW-YPVQAGDVL----W----MAPFVPQWYAALGKTRTRYLLY 292 (300)
Q Consensus 222 ~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~g~~-~~v~~GD~i----~----~~~~~~H~~~n~G~e~~~fi~~ 292 (300)
..+.+|++|..-..--.-..+---.+|+|+..+.-||.- |.|.|-.|+ | ...+...+..-+-+++++||+.
T Consensus 28 ~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qFlDSPEW~s~~~s~~~~FQVTitA~~~Cryl~W 107 (153)
T PF04831_consen 28 CEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQFLDSPEWESLRPSEDDKFQVTITAEEDCRYLCW 107 (153)
T ss_pred ceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeecccccccChhhhccccCCCCeEEEEEEEcCCcEEEEE
Confidence 667888888876542222334456899999999999853 555444332 1 1223334555566789999987
Q ss_pred e
Q 022278 293 K 293 (300)
Q Consensus 293 k 293 (300)
.
T Consensus 108 ~ 108 (153)
T PF04831_consen 108 P 108 (153)
T ss_pred E
Confidence 4
No 292
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=26.71 E-value=67 Score=25.47 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=33.2
Q ss_pred eEEEEEEeeEEEEeCC--EEEEccCCcEEEeCCCCceeEEecCC
Q 022278 243 HGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAALGK 284 (300)
Q Consensus 243 h~~~iL~G~G~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n~G~ 284 (300)
.+--|-=|.|....|| ....|+.||.++++.|--..+..-|+
T Consensus 37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dge 80 (96)
T COG0234 37 EGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGE 80 (96)
T ss_pred ceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCE
Confidence 4556667888888888 45679999999999998877776554
No 293
>PRK04980 hypothetical protein; Provisional
Probab=26.45 E-value=47 Score=26.64 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=35.5
Q ss_pred EEEEeeEEEEe-CCEEEEccCCcEEEeCCCCceeEEec-CCccEEEEEEeecC
Q 022278 246 LLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAAL-GKTRTRYLLYKDVN 296 (300)
Q Consensus 246 ~iL~G~G~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~-G~e~~~fi~~kd~n 296 (300)
.||+|+=..++ ++++...++||.+.+.-++.+-+.+. --...+.+-|.|+|
T Consensus 14 ~ILsGkKTiTiRd~se~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i~f~eLt 66 (102)
T PRK04980 14 DILAGRKTITIRDESESHFKPGDVLRVGTFEDDRYFCTIEVLSVSPVTFDELN 66 (102)
T ss_pred HHHcCCceEEeeCCcccCCCCCCEEEEEECCCCcEEEEEEEEEEEEEehhhCC
Confidence 37889888888 55688899999999954444444333 33666666666666
No 294
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=26.35 E-value=1.2e+02 Score=26.55 Aligned_cols=46 Identities=17% Similarity=-0.056 Sum_probs=32.4
Q ss_pred EEEecCCcccCcceeeccceEEEEEEeeEEEEe---CCEEEE---ccCCcEEE
Q 022278 224 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---GDSWYP---VQAGDVLW 270 (300)
Q Consensus 224 ~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~---~g~~~~---v~~GD~i~ 270 (300)
...+++|..+- .+-....+.|+|++|...+.. ||+... +.+||++-
T Consensus 39 ~~~~~kge~l~-~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g 90 (235)
T PRK11161 39 KKPIQKGQTLF-KAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVG 90 (235)
T ss_pred ceeecCCCEeE-CCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceec
Confidence 45788998874 355566688999999997553 354433 48999874
No 295
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=26.14 E-value=62 Score=28.99 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=30.5
Q ss_pred CcEEEEEEEEcCCCcCCCCCCCceEE-EEEEECEEEEEE
Q 022278 102 SHFVMYLANMQENARSALPPHDVERF-IFVVQGSAMLTN 139 (300)
Q Consensus 102 ~~f~~~lv~l~PG~~~~~~~h~gEEf-~yVLeG~v~l~v 139 (300)
..|.+-++-|+||+..+.|.|++-.. .=||.|++.++-
T Consensus 42 ~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~S 80 (200)
T PF07847_consen 42 EDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKS 80 (200)
T ss_pred CCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEE
Confidence 37888888899999889998876554 559999999864
No 296
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=25.82 E-value=1.2e+02 Score=26.25 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=30.0
Q ss_pred CCEEEEccCCcEEEeCCC-CceeEEecC------CccEEEEEE
Q 022278 257 GDSWYPVQAGDVLWMAPF-VPQWYAALG------KTRTRYLLY 292 (300)
Q Consensus 257 ~g~~~~v~~GD~i~~~~~-~~H~~~n~G------~e~~~fi~~ 292 (300)
.|.....++||+++...+ ..|+..... .+++.+.+|
T Consensus 126 ~g~~~~~~~GtVl~~~~~~~~Hgvtpv~~~~~~~~~R~slvfy 168 (171)
T PF12851_consen 126 LGVAFAYQPGTVLIFCAKRELHGVTPVESPNRNHGTRISLVFY 168 (171)
T ss_pred CCEEEecCCCcEEEEcccceeeecCcccCCCCCCCeEEEEEEE
Confidence 678889999999999999 899988776 567776666
No 297
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=25.73 E-value=1.1e+02 Score=25.82 Aligned_cols=32 Identities=9% Similarity=0.026 Sum_probs=23.3
Q ss_pred EEEeccCcEEEeCCCCceEEeeCCeEEEEEEE
Q 022278 144 SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE 175 (300)
Q Consensus 144 ~~~L~~Gds~yfpa~~~H~~~N~~~a~vl~v~ 175 (300)
...|.+|+++.|-|+..|+-......|-++++
T Consensus 107 ~v~l~~G~F~iffP~daH~P~~~~~ikK~VvK 138 (149)
T PRK10202 107 TVEVHEGQIVICDIHEAYRFICNNAVKKVVLK 138 (149)
T ss_pred EEEeCCCeEEEECCcccccCCCCCcEEEEEEE
Confidence 56789999999999999987643445555554
No 298
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=25.26 E-value=38 Score=25.81 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=23.3
Q ss_pred EEEccCCcEEEeCCCCceeEEecCCccEEEEEEee
Q 022278 260 WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD 294 (300)
Q Consensus 260 ~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~kd 294 (300)
..=++.||++.+.|-.. .+--+.+..++|+||
T Consensus 36 ~iWIkrGd~VlV~p~~~---~~kvkgeIv~i~~~~ 67 (78)
T cd05792 36 NIWIKRGDFVLVEPIEE---GDKVKAEIVKILTRD 67 (78)
T ss_pred cEEEEeCCEEEEEeccc---CCceEEEEEEEECHH
Confidence 44578999999987663 233356888999886
No 299
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=24.79 E-value=15 Score=30.17 Aligned_cols=45 Identities=18% Similarity=0.429 Sum_probs=29.0
Q ss_pred EEEEEEecCCcccCcceeeccceEEEEEEee---EEEEeCCE-EEEccCCcEEEeCCCC
Q 022278 221 NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ---GIYRLGDS-WYPVQAGDVLWMAPFV 275 (300)
Q Consensus 221 ~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~---G~~~~~g~-~~~v~~GD~i~~~~~~ 275 (300)
.+.+..+.-|..+ .-|++.|+ |.+.+||. -+.+++||.+.+.+|.
T Consensus 43 ~V~V~Nv~nG~Rf----------~TYvI~g~~GSg~I~lNGaAArl~~~GD~vII~sy~ 91 (116)
T PF02261_consen 43 QVQVVNVNNGERF----------ETYVIPGERGSGVICLNGAAARLVQVGDRVIIMSYA 91 (116)
T ss_dssp EEEEEETTT--EE----------EEEEEEESTTTT-EEEEGGGGGCS-TT-EEEEEEEE
T ss_pred EEEEEECCCCcEE----------EEEEEEccCCCcEEEECCHHHhccCCCCEEEEEEcc
Confidence 3556655555543 35777776 79999994 6889999999998874
No 300
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.68 E-value=92 Score=33.38 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=31.3
Q ss_pred cCCCcCCCCCCCceEEEEEEECEEEEEEcCC----cEEEeccCcEEE
Q 022278 112 QENARSALPPHDVERFIFVVQGSAMLTNASG----VSSKLMVDSYTY 154 (300)
Q Consensus 112 ~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg----~~~~L~~Gds~y 154 (300)
.||..--......++++||..|.+++.-.+| ..-.|++||++=
T Consensus 448 ~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~G 494 (727)
T KOG0498|consen 448 TPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFG 494 (727)
T ss_pred CCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccc
Confidence 4543333335678999999999999876231 567999999986
No 301
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.46 E-value=2.6e+02 Score=27.61 Aligned_cols=47 Identities=6% Similarity=-0.060 Sum_probs=39.0
Q ss_pred eccceEEEEEEeeEEEEeCCEEEEccCCcEEEeCCCCceeEEecCCc
Q 022278 239 HYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT 285 (300)
Q Consensus 239 H~~eh~~~iL~G~G~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e 285 (300)
-+-|+.+++-.|+..+.-+=...+|++||+..||-|..=-.+-...+
T Consensus 144 ADge~Livpq~G~l~l~te~G~l~v~pgeiavIPRG~~frve~~~~~ 190 (427)
T COG3508 144 ADGELLIVPQQGELRLKTELGVLEVEPGEIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred CCCCEEEEeecceEEEEEeeceEEecCCcEEEeeCCceEEEEecCCc
Confidence 34567888999999999888889999999999999988766665555
No 302
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=24.29 E-value=7.8 Score=25.84 Aligned_cols=22 Identities=5% Similarity=-0.006 Sum_probs=16.5
Q ss_pred CCccCCcccccccCCCCcceee
Q 022278 24 GGFCSAPSILDRETSSKPMYWK 45 (300)
Q Consensus 24 ~~~~~~~~~a~r~~lsk~~~Sq 45 (300)
.+-+|+.+||+++|+|.+-+++
T Consensus 15 ~~~~t~~ela~~~~is~~tv~~ 36 (48)
T PF13412_consen 15 NPRITQKELAEKLGISRSTVNR 36 (48)
T ss_dssp CTTS-HHHHHHHHTS-HHHHHH
T ss_pred cCCCCHHHHHHHhCCCHHHHHH
Confidence 4459999999999999887665
No 303
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=23.94 E-value=56 Score=31.90 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=0.0
Q ss_pred EEEcCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcEEEeccCcEE
Q 022278 109 ANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVSSKLMVDSYT 153 (300)
Q Consensus 109 v~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v-~gg~~~~L~~Gds~ 153 (300)
...++|..-..+...||+|+.+.+|++.+.- .+|-..++++||+|
T Consensus 266 k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dyf 311 (368)
T KOG1113|consen 266 KSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEVKLKKGDYF 311 (368)
T ss_pred eeccCCceEEeccCCcceEEEecccccchhhccCCeEEEechhhhc
No 304
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=23.57 E-value=3.5e+02 Score=24.78 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=44.8
Q ss_pred CCcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEeccCcEEEeCCCCceEEeeCC
Q 022278 101 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG 167 (300)
Q Consensus 101 g~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~v~gg~~~~L~~Gds~yfpa~~~H~~~N~~ 167 (300)
|..++.-.+-+..| +++......|-.++.++|+..++. +|.++.|++..-+.+.++.. .|.|.+
T Consensus 205 g~~y~t~v~~~g~g-s~~~~~~~v~~~~w~~e~s~vv~~-~g~~~~~~~~s~~~~~~~s~-~~~~~~ 268 (279)
T KOG3995|consen 205 GDTYETQVIAYGQG-SSEGLRQNVDVWLWQLEGSSVVTM-GGRRLSLAPDSLLVLAGTSY-AWERTQ 268 (279)
T ss_pred CccceeeEEEeccc-cchhhcCceEEEEEEecCceEEee-cCeEEeeCCcceEEEcCcch-hhhhcc
Confidence 44444444444433 334446788999999999999997 99999999988888877654 455533
No 305
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=23.20 E-value=16 Score=27.11 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=12.8
Q ss_pred cCCcccccccCCCCc
Q 022278 27 CSAPSILDRETSSKP 41 (300)
Q Consensus 27 ~~~~~~a~r~~lsk~ 41 (300)
-|.++|+++||||+.
T Consensus 45 a~~~el~~~CgL~~a 59 (70)
T PF10975_consen 45 ASVEELMEECGLSRA 59 (70)
T ss_pred CCHHHHHHHcCCCHH
Confidence 467999999999975
No 306
>PTZ00258 GTP-binding protein; Provisional
Probab=22.97 E-value=49 Score=32.70 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=25.0
Q ss_pred eeEEEEeCCEEEEccCCcEEEeCCCCce
Q 022278 250 GQGIYRLGDSWYPVQAGDVLWMAPFVPQ 277 (300)
Q Consensus 250 G~G~~~~~g~~~~v~~GD~i~~~~~~~H 277 (300)
..|.++.-|+.|.|+-||+|.+.-+++|
T Consensus 363 ~~g~~r~eGkdYiv~DGDIi~f~fnv~~ 390 (390)
T PTZ00258 363 AEGKYRQEGKDYVVQDGDIIFFKFNVSK 390 (390)
T ss_pred hcCceeeeCCceEecCCCEEEEEecCCC
Confidence 5689999999999999999999887765
No 307
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=22.96 E-value=60 Score=24.47 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=16.5
Q ss_pred EEEEEEcCCcEEEeccCcEEE
Q 022278 134 SAMLTNASGVSSKLMVDSYTY 154 (300)
Q Consensus 134 ~v~l~v~gg~~~~L~~Gds~y 154 (300)
.+++++ +|+++...+|+++.
T Consensus 3 ~v~i~i-dG~~v~~~~G~til 22 (82)
T PF13510_consen 3 MVTITI-DGKPVEVPPGETIL 22 (82)
T ss_dssp EEEEEE-TTEEEEEEET-BHH
T ss_pred EEEEEE-CCEEEEEcCCCHHH
Confidence 578999 99999999999864
No 308
>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=22.79 E-value=3.1e+02 Score=22.54 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=19.4
Q ss_pred CcEEEEEEEEcCCCcCCCCCCCceEEEEEEECEEEEE
Q 022278 102 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLT 138 (300)
Q Consensus 102 ~~f~~~lv~l~PG~~~~~~~h~gEEf~yVLeG~v~l~ 138 (300)
.+..|++..|.||--.-....+.++.++|-.|-+++.
T Consensus 36 p~H~p~it~L~~G~l~i~~~~~~~~~~~v~gGf~~v~ 72 (132)
T PRK13450 36 PNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVE 72 (132)
T ss_pred CCCcccEeEEccEEEEEEECCCcEEEEEEcCeEEEEE
Confidence 4566677777776433211233344556666655554
No 309
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=22.72 E-value=2.4e+02 Score=25.98 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=36.4
Q ss_pred CCCcCCCCC--CCceEEEEEEECEEEEEE--cCCcE---EEeccC-cEEEeCCCCceEEee
Q 022278 113 ENARSALPP--HDVERFIFVVQGSAMLTN--ASGVS---SKLMVD-SYTYLPPNFAHSLRA 165 (300)
Q Consensus 113 PG~~~~~~~--h~gEEf~yVLeG~v~l~v--~gg~~---~~L~~G-ds~yfpa~~~H~~~N 165 (300)
|++-..+|. .+..+.+-||+|++.+.. .+++. ..+.+. +.-.++++..|++..
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~ 80 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEA 80 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEE
Confidence 444444452 366799999999999876 23332 355554 455699999999986
No 310
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=22.51 E-value=1.6e+02 Score=25.30 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=26.8
Q ss_pred CcEEEeccCcEEEeCCCCceEEee--C--CeEEEEEEEee
Q 022278 142 GVSSKLMVDSYTYLPPNFAHSLRA--E--GSATLVVFERR 177 (300)
Q Consensus 142 g~~~~L~~Gds~yfpa~~~H~~~N--~--~~a~vl~v~~~ 177 (300)
.++.+|.+|+++.|-|+.+|+... . ++.|=++|+-+
T Consensus 111 e~~v~L~~G~faiFfP~e~H~P~c~~~~~~~IkKvVvKv~ 150 (154)
T COG2731 111 ESTVELNPGMFAIFFPGEPHRPGCNVGVPEPIKKVVVKVA 150 (154)
T ss_pred ceEEEeCCCCEEEECCCCccccccccCCcceeEEEEEEEe
Confidence 345689999999999999999773 3 55665666543
No 311
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=22.37 E-value=1.5e+02 Score=24.71 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=34.8
Q ss_pred eEEEEEEecCCcccCcceeeccceEEEEEEeeEEEEeC---CEEE---EccCCcEEEeC
Q 022278 220 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---DSWY---PVQAGDVLWMA 272 (300)
Q Consensus 220 ~~~~~~tl~PG~~~p~~~~H~~eh~~~iL~G~G~~~~~---g~~~---~v~~GD~i~~~ 272 (300)
..+....+++|..+= .+-..-...|+|++|...+... |++. .+++||++=-.
T Consensus 21 ~~~~~~~~~~g~~l~-~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~ 78 (214)
T COG0664 21 LKLEVRKLPKGEVLF-TEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGEL 78 (214)
T ss_pred hhceeEeeCCCCEEE-cCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhH
Confidence 455677788887663 3455555789999999987754 4333 46688886433
No 312
>PHA01083 hypothetical protein
Probab=21.79 E-value=19 Score=30.78 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=33.0
Q ss_pred CCcccccccCCCCcceeeecCC-CCChhh-----hhcccCCcce
Q 022278 28 SAPSILDRETSSKPMYWKVTNP-TLSPSH-----LQDLPGFTRS 65 (300)
Q Consensus 28 ~~~~~a~r~~lsk~~~Sqver~-~~sps~-----I~~~lg~trs 65 (300)
+-.+||.+.|+|.+-||+..+| ...++. +++.+|.+..
T Consensus 18 sdkqLA~~LGVs~q~IS~~R~G~r~~i~de~A~~LAe~aGiDp~ 61 (149)
T PHA01083 18 QYKQIAHDLGVSPQKISKMRTGVRTYISDEEAIFLAESAGIDPE 61 (149)
T ss_pred cHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHH
Confidence 3468999999999999999999 877777 8999999864
No 313
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.44 E-value=65 Score=32.87 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=46.9
Q ss_pred EEEcCCCcCCCC--CCCceEEEEEEECEEEEEE-c------------C--------Cc---EEEeccCcEEEeCCCCceE
Q 022278 109 ANMQENARSALP--PHDVERFIFVVQGSAMLTN-A------------S--------GV---SSKLMVDSYTYLPPNFAHS 162 (300)
Q Consensus 109 v~l~PG~~~~~~--~h~gEEf~yVLeG~v~l~v-~------------g--------g~---~~~L~~Gds~yfpa~~~H~ 162 (300)
+.|-|-++.+.. -.+.|-|+.=+||+=...+ . . |+ ...|++||-+|||.|.-|+
T Consensus 321 vYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQ 400 (629)
T KOG3706|consen 321 VYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQ 400 (629)
T ss_pred eeecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceee
Confidence 344455555444 4588999999999753322 0 0 12 2579999999999999999
Q ss_pred Eee-CCeEEEEEEEeeccc
Q 022278 163 LRA-EGSATLVVFERRYAS 180 (300)
Q Consensus 163 ~~N-~~~a~vl~v~~~y~~ 180 (300)
-+. +..-.+.+-.+.|+.
T Consensus 401 A~t~~~vHSlHvTlStyqq 419 (629)
T KOG3706|consen 401 ADTPALVHSLHVTLSTYQQ 419 (629)
T ss_pred ccccchhceeEEEeehhhh
Confidence 875 333334455566643
No 314
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=21.03 E-value=1.6e+02 Score=22.69 Aligned_cols=24 Identities=8% Similarity=0.074 Sum_probs=16.0
Q ss_pred EEEEccCCcEEEeCCCCceeEEec
Q 022278 259 SWYPVQAGDVLWMAPFVPQWYAAL 282 (300)
Q Consensus 259 ~~~~v~~GD~i~~~~~~~H~~~n~ 282 (300)
...+.++||++..|+...|+....
T Consensus 66 ~~~~p~~G~lvlFPs~l~H~v~p~ 89 (101)
T PF13759_consen 66 YIVEPEEGDLVLFPSWLWHGVPPN 89 (101)
T ss_dssp EEE---TTEEEEEETTSEEEE---
T ss_pred EEeCCCCCEEEEeCCCCEEeccCc
Confidence 356889999999999999987654
No 315
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=20.56 E-value=42 Score=27.80 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=33.5
Q ss_pred EEEEEEecCCcccCcceeeccceEEEEEE---eeEEEEeCC-EEEEccCCcEEEeCCCCce
Q 022278 221 NIHIMDFQPGDFLNVKEVHYNQHGLLLLE---GQGIYRLGD-SWYPVQAGDVLWMAPFVPQ 277 (300)
Q Consensus 221 ~~~~~tl~PG~~~p~~~~H~~eh~~~iL~---G~G~~~~~g-~~~~v~~GD~i~~~~~~~H 277 (300)
.+.+....-|+.+ .-|++. |.|++.+|| --+.+++||.+.+.+|+.=
T Consensus 42 kV~I~N~nNGaRf----------~TYvI~g~rGSg~I~lNGAAArl~~~GD~VII~sy~~~ 92 (126)
T COG0853 42 KVDIVNVNNGARF----------STYVIAGERGSGVICLNGAAARLVQVGDLVIIMSYAQM 92 (126)
T ss_pred eEEEEECCCCcEE----------EEEEEEccCCCcEEEechHHHhhCCCCCEEEEEEcccC
Confidence 4555655566653 235554 568999999 4688999999999988654
No 316
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=20.55 E-value=2e+02 Score=24.74 Aligned_cols=45 Identities=9% Similarity=0.233 Sum_probs=32.4
Q ss_pred EEEEEcCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcE-EEeccCcE
Q 022278 107 YLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVS-SKLMVDSY 152 (300)
Q Consensus 107 ~lv~l~PG~~~~~~-~h~gEEf~yVLeG~v~l~v~gg~~-~~L~~Gds 152 (300)
-+.+|.+|...... .-..+..-.+|+|++.+.. +|+. +.+.+-++
T Consensus 29 ~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~-~g~fLH~I~p~qF 75 (153)
T PF04831_consen 29 EIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC-DGRFLHYIYPYQF 75 (153)
T ss_pred eEEEecCCceeeecCCcccceEeEEEcCcEEEEE-CCEeeEeeccccc
Confidence 46678888776443 3455999999999999998 7765 55555443
No 317
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=20.51 E-value=13 Score=26.23 Aligned_cols=22 Identities=9% Similarity=-0.087 Sum_probs=18.4
Q ss_pred CCccCCcccccccCCCCcceee
Q 022278 24 GGFCSAPSILDRETSSKPMYWK 45 (300)
Q Consensus 24 ~~~~~~~~~a~r~~lsk~~~Sq 45 (300)
+-=+|+.+||+..|+||+=+|+
T Consensus 21 PR~~tl~elA~~lgis~st~~~ 42 (53)
T PF04967_consen 21 PRRITLEELAEELGISKSTVSE 42 (53)
T ss_pred CCcCCHHHHHHHhCCCHHHHHH
Confidence 5567889999999999987665
No 318
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=20.26 E-value=7 Score=26.36 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=18.6
Q ss_pred ccCCcccccccCCCCcceeeecC
Q 022278 26 FCSAPSILDRETSSKPMYWKVTN 48 (300)
Q Consensus 26 ~~~~~~~a~r~~lsk~~~Sqver 48 (300)
=.|+.+||++.|+|.+-++++++
T Consensus 20 ~~t~~eIa~~lg~s~~~V~~~~~ 42 (50)
T PF04545_consen 20 GLTLEEIAERLGISRSTVRRILK 42 (50)
T ss_dssp T-SHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCcHHHHHHHHH
Confidence 35789999999999998887653
Done!